Query 019697
Match_columns 337
No_of_seqs 229 out of 1298
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 05:46:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019697.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019697hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2hig_A 6-phospho-1-fructokinas 100.0 8.5E-71 2.9E-75 556.7 19.5 265 69-337 17-293 (487)
2 3o8o_A 6-phosphofructokinase s 100.0 3.8E-64 1.3E-68 530.7 15.4 262 70-336 305-586 (787)
3 3o8o_B 6-phosphofructokinase s 100.0 4.9E-64 1.7E-68 529.4 12.7 260 70-333 305-585 (766)
4 3o8l_A 6-phosphofructokinase, 100.0 8.3E-64 2.8E-68 527.5 13.7 263 70-337 315-593 (762)
5 3opy_B 6-phosphofructo-1-kinas 100.0 7E-64 2.4E-68 534.9 13.2 263 70-336 483-765 (941)
6 3opy_A 6-phosphofructo-1-kinas 100.0 2.3E-63 7.8E-68 530.5 14.4 261 70-334 510-790 (989)
7 2f48_A Diphosphate--fructose-6 100.0 3.1E-60 1.1E-64 486.7 20.9 248 80-337 11-271 (555)
8 1zxx_A 6-phosphofructokinase; 100.0 4.3E-60 1.5E-64 457.7 17.4 183 145-337 2-189 (319)
9 1pfk_A Phosphofructokinase; tr 100.0 4.9E-60 1.7E-64 457.5 17.3 183 145-337 3-190 (320)
10 4a3s_A 6-phosphofructokinase; 100.0 1.7E-58 5.9E-63 446.5 16.9 182 145-336 2-188 (319)
11 3hno_A Pyrophosphate-dependent 100.0 1.4E-57 4.7E-62 454.1 18.9 194 144-337 3-215 (419)
12 3o8l_A 6-phosphofructokinase, 100.0 3.2E-55 1.1E-59 462.2 17.2 191 143-337 14-228 (762)
13 3o8o_B 6-phosphofructokinase s 100.0 1.5E-54 5.1E-59 457.3 19.1 190 144-337 3-217 (766)
14 3o8o_A 6-phosphofructokinase s 100.0 7.7E-55 2.6E-59 459.9 16.1 191 143-337 4-218 (787)
15 3opy_A 6-phosphofructo-1-kinas 100.0 3.4E-54 1.2E-58 460.1 18.3 191 143-337 209-423 (989)
16 3opy_B 6-phosphofructo-1-kinas 100.0 4.7E-54 1.6E-58 459.2 17.7 191 143-337 180-395 (941)
17 2an1_A Putative kinase; struct 95.2 0.026 8.7E-07 52.4 5.9 89 145-269 6-94 (292)
18 2i2c_A Probable inorganic poly 94.3 0.025 8.6E-07 52.4 3.5 45 223-270 18-69 (272)
19 1z0s_A Probable inorganic poly 93.1 0.036 1.2E-06 52.3 2.3 64 222-301 42-122 (278)
20 1yt5_A Inorganic polyphosphate 87.7 0.15 5.2E-06 46.7 1.1 53 232-300 40-94 (258)
21 3l49_A ABC sugar (ribose) tran 87.7 13 0.00046 32.3 14.6 128 143-313 4-131 (291)
22 1u0t_A Inorganic polyphosphate 79.9 0.82 2.8E-05 42.8 2.5 35 231-270 73-107 (307)
23 2qv7_A Diacylglycerol kinase D 79.2 2.9 9.8E-05 39.3 6.1 53 222-277 69-121 (337)
24 2bon_A Lipid kinase; DAG kinas 78.7 6.4 0.00022 36.9 8.3 53 222-277 71-125 (332)
25 3pfn_A NAD kinase; structural 77.6 1.3 4.4E-05 43.3 3.1 56 232-302 107-164 (365)
26 3s4y_A Thiamin pyrophosphokina 77.1 11 0.00038 34.5 9.2 101 135-245 11-134 (247)
27 3afo_A NADH kinase POS5; alpha 72.5 1.2 4.1E-05 43.7 1.5 54 232-300 113-169 (388)
28 1jq5_A Glycerol dehydrogenase; 72.4 6.4 0.00022 37.4 6.5 51 221-276 74-124 (370)
29 3l8m_A Probable thiamine pyrop 71.5 8.2 0.00028 34.4 6.7 69 176-245 22-101 (212)
30 3tb6_A Arabinose metabolism tr 70.7 52 0.0018 28.4 12.7 129 145-316 16-146 (298)
31 3s40_A Diacylglycerol kinase; 69.2 3.7 0.00013 38.0 4.0 54 220-277 51-104 (304)
32 3uhj_A Probable glycerol dehyd 68.8 7.3 0.00025 37.8 6.1 52 220-276 93-144 (387)
33 1oj7_A Hypothetical oxidoreduc 67.6 5.8 0.0002 38.4 5.1 55 221-275 94-164 (408)
34 3m9w_A D-xylose-binding peripl 65.9 39 0.0013 29.9 10.0 127 144-314 2-130 (313)
35 3ox4_A Alcohol dehydrogenase 2 65.6 9.7 0.00033 36.6 6.3 57 220-276 75-144 (383)
36 3h75_A Periplasmic sugar-bindi 65.5 75 0.0026 28.6 12.1 29 144-172 3-32 (350)
37 3rot_A ABC sugar transporter, 65.2 45 0.0015 29.3 10.2 89 144-269 3-93 (297)
38 3o74_A Fructose transport syst 64.8 66 0.0022 27.4 11.7 125 145-315 3-128 (272)
39 1rrm_A Lactaldehyde reductase; 64.2 9.1 0.00031 36.6 5.7 57 220-276 75-146 (386)
40 3k4h_A Putative transcriptiona 64.2 71 0.0024 27.6 12.7 86 143-268 7-98 (292)
41 3lm8_A Thiamine pyrophosphokin 64.1 30 0.001 31.0 8.9 69 177-245 26-105 (222)
42 3lkb_A Probable branched-chain 63.6 23 0.00078 32.5 8.2 107 157-272 124-234 (392)
43 3k94_A Thiamin pyrophosphokina 63.6 24 0.00083 31.7 8.1 69 177-245 25-104 (223)
44 3iv7_A Alcohol dehydrogenase I 62.1 8 0.00027 37.2 4.9 51 220-276 75-125 (364)
45 1o2d_A Alcohol dehydrogenase, 60.9 6.6 0.00023 37.5 4.1 52 220-271 85-149 (371)
46 3dbi_A Sugar-binding transcrip 60.9 79 0.0027 28.3 11.2 124 144-314 61-188 (338)
47 3kjx_A Transcriptional regulat 60.5 67 0.0023 28.9 10.7 86 144-268 68-153 (344)
48 3uug_A Multiple sugar-binding 60.2 91 0.0031 27.5 13.5 102 144-286 3-107 (330)
49 3jzd_A Iron-containing alcohol 60.2 9.1 0.00031 36.7 4.9 47 221-272 77-123 (358)
50 3hl0_A Maleylacetate reductase 60.2 9.8 0.00033 36.3 5.1 50 221-276 75-124 (353)
51 3bfj_A 1,3-propanediol oxidore 59.0 15 0.0005 35.2 6.1 57 220-276 79-148 (387)
52 3clk_A Transcription regulator 58.3 93 0.0032 27.0 11.1 92 143-272 7-98 (290)
53 3jy6_A Transcriptional regulat 57.7 92 0.0032 26.8 13.5 87 142-268 5-91 (276)
54 3okf_A 3-dehydroquinate syntha 57.1 4.3 0.00015 39.8 2.0 50 220-272 107-159 (390)
55 3s81_A Putative aspartate race 56.7 23 0.0008 32.5 6.9 43 220-268 86-128 (268)
56 3rf7_A Iron-containing alcohol 56.2 13 0.00046 35.8 5.4 57 220-276 93-165 (375)
57 3fst_A 5,10-methylenetetrahydr 56.1 22 0.00075 33.6 6.7 102 163-270 41-154 (304)
58 3h5o_A Transcriptional regulat 55.8 80 0.0027 28.4 10.3 29 144-172 62-90 (339)
59 2vk2_A YTFQ, ABC transporter p 54.9 1.1E+02 0.0038 26.8 13.4 86 144-268 2-89 (306)
60 3g1w_A Sugar ABC transporter; 54.4 1.1E+02 0.0037 26.6 14.3 131 143-316 3-136 (305)
61 1vlj_A NADH-dependent butanol 53.0 15 0.0005 35.5 5.1 57 220-276 88-157 (407)
62 3e3m_A Transcriptional regulat 53.0 94 0.0032 28.1 10.4 85 144-268 70-155 (355)
63 3cqj_A L-ribulose-5-phosphate 52.9 1.1E+02 0.0038 26.9 10.6 50 220-269 30-88 (295)
64 2dri_A D-ribose-binding protei 52.1 1.1E+02 0.0039 26.2 11.0 126 145-314 2-130 (271)
65 1xah_A Sadhqs, 3-dehydroquinat 50.8 21 0.0007 33.8 5.6 50 220-272 74-126 (354)
66 3l6u_A ABC-type sugar transpor 50.8 1.2E+02 0.0041 26.1 12.2 90 143-269 7-96 (293)
67 1x60_A Sporulation-specific N- 50.7 26 0.00089 25.5 5.1 50 213-262 14-72 (79)
68 3clh_A 3-dehydroquinate syntha 50.5 23 0.00079 33.4 5.9 50 220-272 69-121 (343)
69 2gru_A 2-deoxy-scyllo-inosose 50.2 17 0.00057 34.8 4.9 49 221-272 79-130 (368)
70 3e61_A Putative transcriptiona 50.0 52 0.0018 28.3 7.8 121 144-314 8-129 (277)
71 8abp_A L-arabinose-binding pro 49.9 1.3E+02 0.0044 26.1 11.2 87 144-268 2-88 (306)
72 3ipc_A ABC transporter, substr 49.8 41 0.0014 30.2 7.3 106 157-271 119-228 (356)
73 3o1i_D Periplasmic protein TOR 49.5 80 0.0027 27.4 9.0 70 143-245 4-75 (304)
74 1ujn_A Dehydroquinate synthase 48.9 20 0.00069 33.9 5.3 50 220-272 68-120 (348)
75 1vdr_A DHFR, dihydrofolate red 48.7 7.2 0.00025 32.8 1.9 50 221-277 81-130 (162)
76 3huu_A Transcription regulator 48.1 1.4E+02 0.0048 26.1 11.0 85 144-268 22-112 (305)
77 3lkv_A Uncharacterized conserv 48.0 1.2E+02 0.0041 27.2 10.2 73 142-242 6-78 (302)
78 3ce9_A Glycerol dehydrogenase; 47.5 12 0.0004 35.3 3.3 51 221-277 77-127 (354)
79 1cz3_A Dihydrofolate reductase 46.6 9.1 0.00031 32.2 2.2 48 220-274 80-129 (168)
80 3egc_A Putative ribose operon 45.9 46 0.0016 29.0 6.8 69 143-244 7-75 (291)
81 3apt_A Methylenetetrahydrofola 45.9 15 0.00052 34.5 3.8 88 178-269 44-150 (310)
82 3kke_A LACI family transcripti 45.8 1.5E+02 0.0053 25.9 12.5 87 144-270 15-102 (303)
83 2pbq_A Molybdenum cofactor bio 45.7 13 0.00045 31.9 3.1 26 219-244 50-79 (178)
84 1uta_A FTSN, MSGA, cell divisi 45.6 23 0.00078 26.2 4.1 52 213-264 14-74 (81)
85 1kq3_A Glycerol dehydrogenase; 45.0 13 0.00045 35.4 3.3 50 221-276 83-132 (376)
86 3td9_A Branched chain amino ac 44.6 1.4E+02 0.0047 26.8 10.0 107 157-271 130-239 (366)
87 3ors_A N5-carboxyaminoimidazol 44.2 34 0.0012 29.8 5.5 55 212-273 37-92 (163)
88 3trh_A Phosphoribosylaminoimid 43.9 43 0.0015 29.3 6.1 53 212-271 40-93 (169)
89 3qk7_A Transcriptional regulat 43.7 1.4E+02 0.0049 26.0 9.8 26 221-246 53-78 (294)
90 2fep_A Catabolite control prot 43.5 1.6E+02 0.0056 25.5 10.6 87 143-269 15-102 (289)
91 2yxb_A Coenzyme B12-dependent 42.6 88 0.003 26.2 7.8 87 143-244 17-109 (161)
92 3brq_A HTH-type transcriptiona 42.4 1.6E+02 0.0055 25.1 13.5 87 143-269 18-108 (296)
93 2o20_A Catabolite control prot 41.7 1.9E+02 0.0065 25.7 10.8 69 143-245 62-131 (332)
94 1ta9_A Glycerol dehydrogenase; 41.5 16 0.00056 36.1 3.4 50 221-276 134-183 (450)
95 2omk_A Hypothetical protein; s 41.1 1.7E+02 0.0057 26.3 9.9 89 145-245 32-131 (231)
96 1dbq_A Purine repressor; trans 40.9 1.7E+02 0.0059 25.0 13.2 69 144-245 7-75 (289)
97 3ihk_A Thiamin pyrophosphokina 40.6 48 0.0017 29.5 6.1 86 147-245 3-100 (218)
98 1sg6_A Pentafunctional AROM po 40.2 27 0.00092 33.6 4.6 50 220-272 87-141 (393)
99 3bil_A Probable LACI-family tr 39.4 2.2E+02 0.0074 25.7 11.9 86 144-269 66-152 (348)
100 1usg_A Leucine-specific bindin 39.4 1.2E+02 0.0041 26.7 8.6 63 205-270 162-227 (346)
101 3gbv_A Putative LACI-family tr 39.2 1.4E+02 0.0046 25.8 8.8 141 143-326 7-165 (304)
102 2qip_A Protein of unknown func 38.9 53 0.0018 27.5 5.8 50 220-272 94-145 (165)
103 2rgy_A Transcriptional regulat 37.4 2E+02 0.0069 24.8 15.1 85 144-268 8-96 (290)
104 3hs3_A Ribose operon repressor 36.6 64 0.0022 28.0 6.2 119 143-315 9-130 (277)
105 3lmz_A Putative sugar isomeras 36.5 1.5E+02 0.005 25.6 8.6 15 222-236 63-77 (257)
106 3miz_A Putative transcriptiona 36.4 95 0.0032 27.1 7.4 69 144-245 13-82 (301)
107 2fvy_A D-galactose-binding per 35.5 1.9E+02 0.0065 24.9 9.2 88 145-269 3-91 (309)
108 3jtw_A Dihydrofolate reductase 35.3 13 0.00046 31.6 1.5 47 220-273 96-144 (178)
109 4evq_A Putative ABC transporte 34.6 84 0.0029 28.2 6.9 63 204-269 174-239 (375)
110 3kuu_A Phosphoribosylaminoimid 34.5 49 0.0017 29.1 4.9 53 212-271 46-99 (174)
111 3oow_A Phosphoribosylaminoimid 34.2 68 0.0023 28.0 5.8 54 212-272 39-93 (166)
112 3qbe_A 3-dehydroquinate syntha 34.0 44 0.0015 32.2 5.1 49 221-272 88-139 (368)
113 3ksm_A ABC-type sugar transpor 33.9 2.1E+02 0.0073 24.1 12.5 90 145-269 1-91 (276)
114 3eaf_A ABC transporter, substr 33.9 1.8E+02 0.0063 26.4 9.2 111 156-274 121-237 (391)
115 3mel_A Thiamin pyrophosphokina 33.9 46 0.0016 29.8 4.8 90 147-245 3-104 (222)
116 4b4k_A N5-carboxyaminoimidazol 33.8 27 0.00093 30.9 3.2 10 261-270 99-108 (181)
117 2gd9_A Hypothetical protein YY 33.5 17 0.00057 30.9 1.8 48 220-274 105-154 (189)
118 3lp8_A Phosphoribosylamine-gly 33.4 2.6E+02 0.0089 26.8 10.5 72 140-239 17-89 (442)
119 3k9c_A Transcriptional regulat 33.4 1.9E+02 0.0065 25.1 8.8 68 144-246 12-79 (289)
120 3lp6_A Phosphoribosylaminoimid 33.3 46 0.0016 29.3 4.5 55 212-273 41-96 (174)
121 2rjo_A Twin-arginine transloca 33.0 1.9E+02 0.0064 25.7 8.9 92 143-272 4-98 (332)
122 3nkl_A UDP-D-quinovosamine 4-d 32.8 67 0.0023 25.2 5.2 46 223-270 55-100 (141)
123 3uhf_A Glutamate racemase; str 32.6 95 0.0033 28.6 6.9 102 135-269 15-117 (274)
124 4eyg_A Twin-arginine transloca 31.8 75 0.0026 28.4 6.0 63 204-269 162-230 (368)
125 3brs_A Periplasmic binding pro 31.7 2.2E+02 0.0075 24.3 8.9 69 143-245 4-77 (289)
126 1iv0_A Hypothetical protein; r 31.2 40 0.0014 26.4 3.5 30 247-276 38-67 (98)
127 2x7x_A Sensor protein; transfe 30.9 2.8E+02 0.0095 24.5 11.8 42 223-268 52-93 (325)
128 3d8u_A PURR transcriptional re 30.9 2.4E+02 0.0083 23.8 12.4 67 145-245 4-71 (275)
129 1o7j_A L-asparaginase; atomic 30.7 2.5E+02 0.0084 26.4 9.6 60 219-280 67-130 (327)
130 1agx_A Glutaminase-asparaginas 30.7 2.4E+02 0.008 26.6 9.5 60 219-280 64-127 (331)
131 3s99_A Basic membrane lipoprot 29.5 2.5E+02 0.0084 26.4 9.4 92 141-268 23-116 (356)
132 3ky8_A Putative riboflavin bio 29.3 20 0.00069 31.3 1.6 49 220-274 113-161 (197)
133 3lop_A Substrate binding perip 29.3 1.2E+02 0.004 27.3 6.9 62 205-269 165-229 (364)
134 1zdr_A Dihydrofolate reductase 29.2 18 0.00063 30.4 1.3 49 221-277 78-126 (164)
135 3u0h_A Xylose isomerase domain 29.1 41 0.0014 29.2 3.6 30 287-317 115-144 (281)
136 2nrr_A Uvrabc system protein C 29.1 1.6E+02 0.0055 25.4 7.2 85 219-307 60-152 (159)
137 2qul_A D-tagatose 3-epimerase; 28.8 2.8E+02 0.0096 23.9 9.7 47 220-266 17-66 (290)
138 3gyb_A Transcriptional regulat 28.5 2.7E+02 0.0093 23.6 11.9 68 143-245 4-71 (280)
139 1fa2_A Beta-amylase; TIM barre 28.4 2.5E+02 0.0085 28.5 9.4 100 222-321 36-186 (498)
140 2h4a_A YRAM (HI1655); perplasm 28.2 60 0.002 30.1 4.8 65 200-268 141-207 (325)
141 1ccw_A Protein (glutamate muta 27.9 2.1E+02 0.0072 23.0 7.6 11 146-156 5-15 (137)
142 2wlt_A L-asparaginase; hydrola 27.6 2.8E+02 0.0094 26.1 9.4 60 219-280 67-130 (332)
143 2qru_A Uncharacterized protein 27.4 1.3E+02 0.0045 26.0 6.6 42 284-329 73-115 (274)
144 3mjf_A Phosphoribosylamine--gl 27.2 1.2E+02 0.004 29.1 6.8 38 144-189 3-40 (431)
145 3gv0_A Transcriptional regulat 27.0 3E+02 0.01 23.6 14.5 86 143-267 7-94 (288)
146 1wls_A L-asparaginase; structu 26.9 2.7E+02 0.0093 26.2 9.2 61 219-280 57-119 (328)
147 3td9_A Branched chain amino ac 26.9 3.4E+02 0.011 24.1 9.8 31 142-172 14-46 (366)
148 3lft_A Uncharacterized protein 26.7 3.2E+02 0.011 23.8 11.4 69 144-241 2-70 (295)
149 2bl9_A Dihydrofolate reductase 26.5 27 0.00092 31.9 2.0 51 221-278 154-206 (238)
150 3hcw_A Maltose operon transcri 25.9 2.9E+02 0.0099 23.9 8.7 78 222-315 57-139 (295)
151 2lnd_A De novo designed protei 25.9 1.2E+02 0.0041 23.8 5.3 57 205-262 23-79 (112)
152 3gh1_A Predicted nucleotide-bi 25.9 2.4E+02 0.0082 28.3 8.8 19 235-253 249-268 (462)
153 1wsa_A Asparaginase, asparagin 25.7 2.5E+02 0.0086 26.4 8.7 60 219-280 65-128 (330)
154 1xmp_A PURE, phosphoribosylami 25.7 50 0.0017 29.0 3.4 52 215-273 48-100 (170)
155 4gqa_A NAD binding oxidoreduct 25.5 1.5E+02 0.005 27.9 7.0 19 137-155 17-37 (412)
156 2jfn_A Glutamate racemase; cel 25.2 2.1E+02 0.007 26.1 7.8 24 144-170 21-44 (285)
157 2obn_A Hypothetical protein; s 25.0 1.8E+02 0.0062 27.8 7.6 159 142-320 74-238 (349)
158 1j3k_A Bifunctional dihydrofol 24.8 31 0.0011 32.3 2.1 51 221-278 145-197 (280)
159 2pn1_A Carbamoylphosphate synt 24.8 3.7E+02 0.013 23.9 11.2 39 221-260 60-98 (331)
160 3bbl_A Regulatory protein of L 24.8 3.3E+02 0.011 23.3 14.5 86 144-268 4-93 (287)
161 3nxk_A Cytoplasmic L-asparagin 24.8 1.4E+02 0.005 28.3 6.8 60 219-280 71-133 (334)
162 3fij_A LIN1909 protein; 11172J 24.7 2.2E+02 0.0075 25.2 7.7 46 195-244 27-72 (254)
163 1qdl_B Protein (anthranilate s 24.5 53 0.0018 27.9 3.4 17 230-246 42-58 (195)
164 2b3z_A Riboflavin biosynthesis 24.4 76 0.0026 30.4 4.8 49 220-275 282-332 (373)
165 2q02_A Putative cytoplasmic pr 24.2 3.3E+02 0.011 23.1 8.7 18 220-237 51-68 (272)
166 3d02_A Putative LACI-type tran 24.1 3.4E+02 0.012 23.2 10.8 88 144-268 4-92 (303)
167 2iks_A DNA-binding transcripti 23.9 2.6E+02 0.0091 24.0 8.0 30 143-172 19-48 (293)
168 3jr7_A Uncharacterized EGV fam 23.7 2.3E+02 0.0079 26.2 7.9 69 195-266 60-134 (298)
169 3snr_A Extracellular ligand-bi 23.7 1.7E+02 0.0058 25.7 6.8 64 205-271 159-225 (362)
170 2h0a_A TTHA0807, transcription 23.6 3.3E+02 0.011 22.9 9.6 23 223-245 45-67 (276)
171 2x5n_A SPRPN10, 26S proteasome 23.3 1.3E+02 0.0045 25.7 5.8 50 221-270 89-145 (192)
172 4grd_A N5-CAIR mutase, phospho 23.2 65 0.0022 28.3 3.7 55 212-273 46-101 (173)
173 3c3k_A Alanine racemase; struc 23.1 3.6E+02 0.012 23.1 12.6 30 143-172 7-36 (285)
174 1u11_A PURE (N5-carboxyaminoim 23.0 55 0.0019 29.0 3.2 55 212-273 55-110 (182)
175 1o4v_A Phosphoribosylaminoimid 22.9 55 0.0019 29.0 3.2 55 212-273 47-102 (183)
176 2q8u_A Exonuclease, putative; 22.9 87 0.003 28.6 4.8 18 222-239 50-67 (336)
177 2re1_A Aspartokinase, alpha an 22.9 56 0.0019 27.3 3.2 30 307-336 100-134 (167)
178 3bdk_A D-mannonate dehydratase 22.7 1.7E+02 0.0059 28.2 7.0 74 224-301 34-115 (386)
179 3ngf_A AP endonuclease, family 21.9 3.7E+02 0.013 23.1 8.6 50 219-270 22-71 (269)
180 2ywx_A Phosphoribosylaminoimid 21.8 64 0.0022 27.9 3.3 10 261-270 73-82 (157)
181 1y80_A Predicted cobalamin bin 21.8 92 0.0032 26.7 4.5 18 144-161 88-105 (210)
182 2xij_A Methylmalonyl-COA mutas 21.8 2.8E+02 0.0097 29.5 8.9 100 194-297 616-726 (762)
183 1wdp_A Beta-amylase; (beta/alp 21.8 4.7E+02 0.016 26.5 10.0 100 222-321 35-185 (495)
184 4pga_A Glutaminase-asparaginas 21.5 1.6E+02 0.0053 28.1 6.3 60 219-280 72-135 (337)
185 1nu0_A Hypothetical protein YQ 21.5 71 0.0024 26.5 3.5 24 252-275 45-68 (138)
186 1qpz_A PURA, protein (purine n 21.4 4.3E+02 0.015 23.4 13.8 68 144-245 58-126 (340)
187 1zq1_A Glutamyl-tRNA(Gln) amid 21.3 3.2E+02 0.011 27.0 8.7 61 219-280 151-214 (438)
188 2qu7_A Putative transcriptiona 20.8 2.5E+02 0.0084 24.1 7.1 68 143-245 7-75 (288)
189 3h5l_A Putative branched-chain 20.8 1.5E+02 0.0052 27.3 6.0 64 204-269 187-253 (419)
190 3tva_A Xylose isomerase domain 20.0 2E+02 0.0069 25.0 6.4 50 219-268 20-72 (290)
No 1
>2hig_A 6-phospho-1-fructokinase; transferase; 2.40A {Trypanosoma brucei} PDB: 3f5m_A*
Probab=100.00 E-value=8.5e-71 Score=556.67 Aligned_cols=265 Identities=40% Similarity=0.665 Sum_probs=239.7
Q ss_pred CCcccccccchhhcCCCC--CCCCCCCCCCcccccccccccccChHHHHHHHhhccC-------CCcccccccCcccccc
Q 019697 69 DGFVLEDVPHLTNFLPDL--PSYPNPLKKSQAYAVVKQTFVSPEDAVAQNIVIQKDS-------PRGVHFRRAGPREKVY 139 (337)
Q Consensus 69 ~~~~~eaV~~l~~~~p~~--p~~~~pL~~n~~~r~~~~~~V~~t~~V~~~~~~~~~~-------~r~~~F~~agpr~~~~ 139 (337)
-.+.+++|+.+.-..|.+ |++++||..|.. ...||.+++.|+..+....+. .....|+++|||+++|
T Consensus 17 ~~~~~~~~~~~~~~i~~lg~~~~~~p~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~agpr~~i~ 92 (487)
T 2hig_A 17 HRAMLNSVTQEDLKVDRLPGADYPNPSKKYSS----RTEFRDKTDYIMYNPRPRDEPSSENPVSVSPLLCELAAARSRIH 92 (487)
T ss_dssp TTCSCSSCCTTTTCCEECSCCCEECTTCCGGG----GGGSBSSCCEEESCCCBCC-----CCBBSCCCEEEECCCBSEES
T ss_pred ccccccCCCccccccCcCCCCCCCCcccccCC----CCeeeCCCCEEEEeeeccCCCccccccccchHHHHHcCCcceee
Confidence 456788888875555544 778999977655 588999999998765332221 1234799999999999
Q ss_pred cCCCCeeEEEEccCCCCchhhHHHHHHHHHHhhhcCCcEEEEEccccccccC---CCeeeCChhhHhchhccCCcceecc
Q 019697 140 FKSDEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYS---KNTLTLSPKVVNDIHKRGGTILRTS 216 (337)
Q Consensus 140 f~~~~~~iaIvt~GG~apGmNavIr~lv~~l~~~~~~~~v~Gi~~G~~GL~~---~~~~~L~~~~V~~~~~~GGS~LGTs 216 (337)
|+++.+||||+||||||||||++||++|+++.+.|+..+||||++||+||++ +++++|+|+.|++|+++|||+|||+
T Consensus 93 f~~~~~rIgIltsGGdaPGmNaaIravv~~a~~~~g~~~V~Gi~~G~~GLl~~~~~~~~~L~~~~V~~i~~~GGTiLGTs 172 (487)
T 2hig_A 93 FNPTETTIGIVTCGGICPGLNDVIRSITLTGINVYNVKRVIGFRFGYWGLSKKGSQTAIELHRGRVTNIHHYGGTILGSS 172 (487)
T ss_dssp SCGGGCEEEEEECSSCCTTHHHHHHHHHHHHHHHHCCSEEEECSTGGGGGSHHHHTTCEEECHHHHTTGGGSSSCSSCCC
T ss_pred ecCCCcEEEEEecCCCcchhhHHHHHHHHHHHHhCCCcEEEEEccCHHHhhhccCCCEEECCHHHHHHHHhCCCCeeccC
Confidence 9999999999999999999999999999999766777799999999999974 6999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeeccccCCccccCcccCchhHHHHHHHHH
Q 019697 217 RGGHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAI 296 (337)
Q Consensus 217 R~~~d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTIDNDI~gtD~S~GfdTAv~~~~~~i 296 (337)
|++++.++++++|++++||+||+||||||+++|.+|++++++++++|+|||||||||||+++||+|||||||+++++++|
T Consensus 173 R~~~~~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vVGIPkTIDNDl~gTD~T~GFdTAv~~~~eaI 252 (487)
T 2hig_A 173 RGPQDPKEMVDTLERLGVNILFTVGGDGTQRGALVISQEAKRRGVDISVFGVPKTIDNDLSFSHRTFGFQTAVEKAVQAI 252 (487)
T ss_dssp CSCCCHHHHHHHHHHHTCSEEEEEECHHHHHHHHHHHHHHHHHTCCCEEEEEECCTTSSCCCSSCCTTHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHhCCCceEEeccccccCCCCCCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCCCeEEEEEecCCCccHHHHHHHHccCCCCCC
Q 019697 297 NAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVVRC 337 (337)
Q Consensus 297 ~~i~~~A~S~~~rV~iVEvMGR~sG~LA~~aaLAs~~~d~c 337 (337)
++++++|.|+++||||||+|||+|||||+++|||+|++|+|
T Consensus 253 d~i~~tA~Sh~~rv~vVEVMGR~aG~LAl~agLA~g~ad~i 293 (487)
T 2hig_A 253 RAAYAEAVSANYGVGVVKLMGRDSGFIAAQAAVASAQANIC 293 (487)
T ss_dssp HHHHHHHHTSTTEEEEEEECCSSCCHHHHHHHHHHTCCSEE
T ss_pred HHHHHHHHhhcCcEEEEEeCCCCHHHHHHHHHHhhCCCCEE
Confidence 99999999998899999999999999999999999988876
No 2
>3o8o_A 6-phosphofructokinase subunit alpha; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.8e-64 Score=530.74 Aligned_cols=262 Identities=20% Similarity=0.233 Sum_probs=239.0
Q ss_pred CcccccccchhhcCCCCCCCCCCCCCCcccccccccccccChHHHHHHHhhccC-----CCcccccccC--------cc-
Q 019697 70 GFVLEDVPHLTNFLPDLPSYPNPLKKSQAYAVVKQTFVSPEDAVAQNIVIQKDS-----PRGVHFRRAG--------PR- 135 (337)
Q Consensus 70 ~~~~eaV~~l~~~~p~~p~~~~pL~~n~~~r~~~~~~V~~t~~V~~~~~~~~~~-----~r~~~F~~ag--------pr- 135 (337)
-++++||.+|++..++++.+++.+++|++++.|++++|..++.|.+++ .+|+| +|+++|++++ ++
T Consensus 305 rlG~~AV~~l~~g~~~~~~~mVg~~~~~i~~~pl~~~~~~~k~v~~~~-~~~~~~~a~~lr~~~f~~~~~~~~~~~~~~~ 383 (787)
T 3o8o_A 305 LQGVDAVKAVLEFTPETPSPLIGILENKIIRMPLVESVKLTKSVATAI-ENKDFDKAISLRDTEFIELYENFLSTTVKDD 383 (787)
T ss_dssp HHHHHHHHHHHTCCSSCCCEEEEESSSSEEEEEHHHHHHHHHHHHHHH-HTTCHHHHHHTSCTTHHHHHHHHHHHHTCTT
T ss_pred HHHHHHHHHHHcCCCCCCCeEEEEECCEEEEEEHHHHHhccCCchHhh-hcCCHHHHHhccCHHHHHHHHHHHHhccCCC
Confidence 367999999999999999999999999999999999999999999998 67887 7999999876 11
Q ss_pred --cccccCCCCeeEEEEccCCCCchhhHHHHHHHHHHhhhcCCcEEEEEcccccccc-CCCeeeCChhhHhchhccCCcc
Q 019697 136 --EKVYFKSDEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFY-SKNTLTLSPKVVNDIHKRGGTI 212 (337)
Q Consensus 136 --~~~~f~~~~~~iaIvt~GG~apGmNavIr~lv~~l~~~~~~~~v~Gi~~G~~GL~-~~~~~~L~~~~V~~~~~~GGS~ 212 (337)
..++ +.+.+||||+||||||||||++||++|+++.+ .+++||||++||+||+ ++++++|+|+.|++|+++|||+
T Consensus 384 ~~~~~~-~~~~~~IgIltsGGdapGmNaaIravv~~a~~--~g~~v~Gi~~G~~GL~~~~~~~~L~~~~v~~i~~~GGt~ 460 (787)
T 3o8o_A 384 GSELLP-VSDRLNIGIVHVGAPSAALNAATRAATLYCLS--HGHKPYAIMNGFSGLIQTGEVKELSWIDVENWHNLGGSE 460 (787)
T ss_dssp SCSCCC-SSCCCEEEEEEESSCCSSHHHHHHHHHHHHHH--HTCEEEEETTHHHHHHHHCCEEECCTTTTTTGGGCCSCT
T ss_pred ccccCC-cccCcEEEEEccCCCCHHHHHHHHHHHHHHHH--CCCEEEEEccChhhhCCCCCEEECCHHHHhhhhcCCCce
Confidence 1121 23468999999999999999999999998864 3589999999999999 8999999999999999999999
Q ss_pred eeccCCC--CchHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHc-CCceeEEEeeccccCCccccCcccCchhHH
Q 019697 213 LRTSRGG--HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKR-GLQVAVAGIPKTIDNDIAVIDKSFGFDTAV 289 (337)
Q Consensus 213 LGTsR~~--~d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~-~~~i~VVgIPkTIDNDI~gtD~S~GfdTAv 289 (337)
|||+|+. +++++++++|++++||+||+||||||+++|.+|+++++++ ++.|+||||||||||||++||+|||||||+
T Consensus 461 LGTsR~~~~~~~~~~~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~~~~~i~vIgiPkTIDNDl~gTD~t~GfdTA~ 540 (787)
T 3o8o_A 461 IGTNRSVASEDLGTIAYYFQKNKLDGLIILGGFEGFRSLKQLRDGRTQHPIFNIPMCLIPATVSNNVPGTEYSLGVDTCL 540 (787)
T ss_dssp TCCBCCCGGGCHHHHHHHHHHTTCSEEEEEESHHHHHHHHHHHHHTTTCGGGGSCEEEEEBCTTCCCTTCSCCBTHHHHH
T ss_pred eccCCCCchhhHHHHHHHHHHhCCCEEEEeCCchHHHHHHHHHHHHHhcCccCCceeecccccccCCCCCcCCCCchHHH
Confidence 9999984 3789999999999999999999999999999999987666 367999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhcCCCeEEEEEecCCCccHHHHHHHHccCCCCC
Q 019697 290 EEAQRAINAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVVR 336 (337)
Q Consensus 290 ~~~~~~i~~i~~~A~S~~~rV~iVEvMGR~sG~LA~~aaLAs~~~d~ 336 (337)
++++++|++++++|.|+++||||||+|||+|||||+++|||+|+ |+
T Consensus 541 ~~~~eaid~i~~ta~ss~~rv~iVEvMGR~aG~lAl~aglA~ga-~~ 586 (787)
T 3o8o_A 541 NALVNYTDDIKQSASATRRRVFVCEVQGGHSGYIASFTGLITGA-VS 586 (787)
T ss_dssp HHHHHHHHHHHHHHHHHSSEEEEEEECCTTCTHHHHHHHHTTTC-SE
T ss_pred HHHHHHHHHHHHHhhccCCcEEEEEeCCCCccHHHHHHHHhcCC-CE
Confidence 99999999999999887789999999999999999999999875 44
No 3
>3o8o_B 6-phosphofructokinase subunit beta; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.9e-64 Score=529.43 Aligned_cols=260 Identities=22% Similarity=0.251 Sum_probs=236.4
Q ss_pred CcccccccchhhcCCCCCCCCCCCCCCcccccccccccccChHHHHHHHhhccC-----CCcccccccC--------c--
Q 019697 70 GFVLEDVPHLTNFLPDLPSYPNPLKKSQAYAVVKQTFVSPEDAVAQNIVIQKDS-----PRGVHFRRAG--------P-- 134 (337)
Q Consensus 70 ~~~~eaV~~l~~~~p~~p~~~~pL~~n~~~r~~~~~~V~~t~~V~~~~~~~~~~-----~r~~~F~~ag--------p-- 134 (337)
-++++||.+|++..+++|.+++.+++|++++.|++++|..++.|.+++ .+|+| +|+++|++++ +
T Consensus 305 ~~G~~AV~~~~~g~~~~~~~mv~~~~~~i~~~pl~~~~~~~k~v~~~~-~~~~~~~a~~lr~~~f~~~~~~~~~~~~~~~ 383 (766)
T 3o8o_B 305 LQGLEAVNAVLESTPDTPSPLIAVNENKIVRKPLMESVKLTKAVAEAI-QAKDFKRAMSLRDTEFIEHLNNFMAINSADH 383 (766)
T ss_dssp HHHHHHHHHHHHCCTTSCCEEEEESSSCEEEEEHHHHHHHHHHHHHHH-HTTCHHHHHHHSCTTHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHcCCCCCCceEEEEECCEEEEEEHHHHHhccCccHHHH-hcCCHHHHHHccCHHHHHHHHHHHHhccCCc
Confidence 367999999999999999999999999999999999999999999998 67887 7999999876 1
Q ss_pred -ccccccCCCCeeEEEEccCCCCchhhHHHHHHHHHHhhhcCCcEEEEEccccccccC-CCeeeCChhhHhchhccCCcc
Q 019697 135 -REKVYFKSDEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYS-KNTLTLSPKVVNDIHKRGGTI 212 (337)
Q Consensus 135 -r~~~~f~~~~~~iaIvt~GG~apGmNavIr~lv~~l~~~~~~~~v~Gi~~G~~GL~~-~~~~~L~~~~V~~~~~~GGS~ 212 (337)
...++ ..+.+||||+||||||||||++||++|+++.. .+.+||||++||+||++ +++++|+|++|++|+++|||+
T Consensus 384 ~~~~~~-~~~~~~IgIltsGGdapGmNaaIravv~~a~~--~g~~v~Gi~~G~~GL~~~~~~~~l~~~~v~~i~~~GGt~ 460 (766)
T 3o8o_B 384 NEPKLP-KDKRLKIAIVNVGAPAGGINSAVYSMATYCMS--QGHRPYAIYNGWSGLARHESVRSLNWKDMLGWQSRGGSE 460 (766)
T ss_dssp STTCSS-SSCCCEEEEEEESSCCTTHHHHHHHHHHHHHH--HTCEEEEETTHHHHHHHHCCEEECCGGGGTTGGGCCSCT
T ss_pred ccccCC-cccCcEEEEEecCCCcHHHHHHHHHHHHHHHH--CCCEEEEEecChHhhCCCCceEECCHHHHhhHhhCCCce
Confidence 11121 22357999999999999999999999998864 35799999999999996 789999999999999999999
Q ss_pred eeccCCC---CchHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHc-CCceeEEEeeccccCCccccCcccCchhH
Q 019697 213 LRTSRGG---HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKR-GLQVAVAGIPKTIDNDIAVIDKSFGFDTA 288 (337)
Q Consensus 213 LGTsR~~---~d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~-~~~i~VVgIPkTIDNDI~gtD~S~GfdTA 288 (337)
|||+|+. +++++++++|++++||+||+||||||+++|.+|+++++++ ++.|+|||||||||||+++||+|||||||
T Consensus 461 LGTsR~~~~~~~~~~~~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~~~~~i~vvgiPkTIDNDl~gTD~T~GfdTA 540 (766)
T 3o8o_B 461 IGTNRVTPEEADLGMIAYYFQKYEFDGLIIVGGFEAFESLHQLERARESYPAFRIPMVLIPATLSNNVPGTEYSLGSDTA 540 (766)
T ss_dssp TCCCCCCGGGGCHHHHHHHHHHHTCSEEEEEESHHHHHHHHHHHTTTTTCGGGCSCCCEEEBCTTCCCSSCSCCBTHHHH
T ss_pred EccCCCCCccchHHHHHHHHHHhCCCEEEEeCCchHHHHHHHHHHHHHhcCccCCcEEeeccccccCCCCCCCCCChhHH
Confidence 9999984 3689999999999999999999999999999999876555 36799999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcCCCeEEEEEecCCCccHHHHHHHHccCC
Q 019697 289 VEEAQRAINAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRD 333 (337)
Q Consensus 289 v~~~~~~i~~i~~~A~S~~~rV~iVEvMGR~sG~LA~~aaLAs~~ 333 (337)
+++++++|++++++|.|+++||||||+|||+|||||++++||+|+
T Consensus 541 ~~~~~~aid~i~~ta~ss~~rv~iVEvMGR~aG~lAl~aglA~ga 585 (766)
T 3o8o_B 541 LNALMEYCDVVKQSASSTRGRAFVVDCQGGNSGYLATYASLAVGA 585 (766)
T ss_dssp HHHHHHHHHHHHHHHHHHSSEEEEEEECCTTCCHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhhccCCcEEEEEeCCCchhHHHHHHHHhhCC
Confidence 999999999999999987789999999999999999999999974
No 4
>3o8l_A 6-phosphofructokinase, muscle type; transferase; HET: ATP ADP; 3.20A {Oryctolagus cuniculus} PDB: 3o8n_A*
Probab=100.00 E-value=8.3e-64 Score=527.46 Aligned_cols=263 Identities=23% Similarity=0.255 Sum_probs=239.4
Q ss_pred CcccccccchhhcCCCCCCCCCCCCCCcccccccccccccChHHHHHHHhhccC-----CCcccccccC--------ccc
Q 019697 70 GFVLEDVPHLTNFLPDLPSYPNPLKKSQAYAVVKQTFVSPEDAVAQNIVIQKDS-----PRGVHFRRAG--------PRE 136 (337)
Q Consensus 70 ~~~~eaV~~l~~~~p~~p~~~~pL~~n~~~r~~~~~~V~~t~~V~~~~~~~~~~-----~r~~~F~~ag--------pr~ 136 (337)
-++.+||.++++..|+++.+++.+++|++++.|++++++.++.|..++ .+++| +|+.+|.+++ ++.
T Consensus 315 ~lG~~AV~~~~~g~~~~~~~~v~~~~~~i~~~Pl~e~~~~~k~v~~~~-~~~~~~~a~~~rg~~f~~~~~~~~~~~~~~~ 393 (762)
T 3o8l_A 315 RMGVEAVMALLEGTPDTPACVVSLSGNQAVRLPLMECVQVTKDVTKAM-DEKRFDEAMKLRGRSFMNNWEVYKLLAHIRP 393 (762)
T ss_dssp HHHHHHHHHHHTCCTTSCCEEEEEETTEEEEEEHHHHHHHHHHHHHHH-HSSCHHHHHHHHCTHHHHHHHHHHHHHCSCC
T ss_pred HHHHHHHHHHHcCCCCCceEEEEEECCEEEEEEHHHHHhccCCCChhh-ccchHHHHHHhhCchHHHHHHHHHHhcCCCC
Confidence 367899999999999999999999999999999999999999999987 46665 5888898755 211
Q ss_pred ccccCCCCeeEEEEccCCCCchhhHHHHHHHHHHhhhcCCcEEEEEccccccccCCCeeeCChhhHhchhccCCcceecc
Q 019697 137 KVYFKSDEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTS 216 (337)
Q Consensus 137 ~~~f~~~~~~iaIvt~GG~apGmNavIr~lv~~l~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~V~~~~~~GGS~LGTs 216 (337)
... ..+++||||+||||||||||++||++|+.+.. .+.+||||++||+||+++++++|+|++|++|+++|||+|||+
T Consensus 394 ~~~-~~~~~~IgIltsGGdapGmNaaIravv~~~~~--~g~~v~Gi~~G~~GL~~~~~~~l~~~~v~~i~~~GGt~LGTs 470 (762)
T 3o8l_A 394 PAP-KSGSYTVAVMNVGAPAAGMNAAVRSTVRIGLI--QGNRVLVVHDGFEGPAKGQIEEAGWSYVGGWTGQGGSKLGSK 470 (762)
T ss_dssp CCC-CSSCCEEEEEEESSCCTTHHHHHHHHHHHHHH--HTCEEEEESSTTHHHHHTCEEECCTTTTSSCTTCCSCSSCEE
T ss_pred ccc-cccCCEEEEEecCCCcHHHHHHHHHHHHHHHH--CCCEEEEEeccccccccCCEEECCHHHhhhHHhCCCceeecC
Confidence 111 14568999999999999999999999998864 358999999999999999999999999999999999999999
Q ss_pred CCC--CchHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHc-CCceeEEEeeccccCCccccCcccCchhHHHHHH
Q 019697 217 RGG--HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKR-GLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQ 293 (337)
Q Consensus 217 R~~--~d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~-~~~i~VVgIPkTIDNDI~gtD~S~GfdTAv~~~~ 293 (337)
|+. +++++++++|++++||+||+||||||+++|.+|+++++++ .+.|+|||||||||||+++||+|||||||+++++
T Consensus 471 R~~~~~~~~~~~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~~~~~i~vvgiPkTIDNDl~gTD~TiGfdTA~~~~~ 550 (762)
T 3o8l_A 471 RTLPKKSFEQISANITKFNIQGLVIIGGFEAYTGGLELMEGRKQFDELCIPFVVIPATVSNNVPGSDFSVGADTALNTIC 550 (762)
T ss_dssp CCCSGGGHHHHHHHHHHTTCCCEEEEESHHHHHHHHHHHHHHHHCSTTCSCEEEEEBCTTCCCTTCSCCBTHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHhccccCCCEEeeccccCCCCCCCcCCCChHHHHHHHH
Confidence 985 4799999999999999999999999999999999999887 4689999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcCCCeEEEEEecCCCccHHHHHHHHccCCCCCC
Q 019697 294 RAINAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVVRC 337 (337)
Q Consensus 294 ~~i~~i~~~A~S~~~rV~iVEvMGR~sG~LA~~aaLAs~~~d~c 337 (337)
++|++++++|.++++||||||+|||+|||||++++||+| +|+|
T Consensus 551 ~aid~i~~tA~ssh~rv~vVEvMGR~aG~lAl~aglA~g-ad~i 593 (762)
T 3o8l_A 551 TTCDRIKQSAAGTKRRVFIIETMGGYCGYLATMAGLAAG-ADAA 593 (762)
T ss_dssp HHHHHHTTTTCSSSCEEEEEEECSTTCCHHHHHHHHHTT-CSEE
T ss_pred HHHHHHHHHHHhCCCcEEEEEeCCcchhHHHHHHHHhhC-CCEE
Confidence 999999999997778999999999999999999999997 5654
No 5
>3opy_B 6-phosphofructo-1-kinase beta-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Probab=100.00 E-value=7e-64 Score=534.86 Aligned_cols=263 Identities=19% Similarity=0.195 Sum_probs=237.8
Q ss_pred CcccccccchhhcCCCCCCCCCCCCCCcccccccccccccChHHHHHHHhhccC-----CCcccccccC--------c--
Q 019697 70 GFVLEDVPHLTNFLPDLPSYPNPLKKSQAYAVVKQTFVSPEDAVAQNIVIQKDS-----PRGVHFRRAG--------P-- 134 (337)
Q Consensus 70 ~~~~eaV~~l~~~~p~~p~~~~pL~~n~~~r~~~~~~V~~t~~V~~~~~~~~~~-----~r~~~F~~ag--------p-- 134 (337)
-++.+||.+|++..++++.+++.+++|+++++|++++|..++.|.+++ .+|+| +|+++|++++ +
T Consensus 483 rlG~~AV~~l~~g~~~~~g~mVg~~~~~iv~~Pl~e~v~~~k~v~~a~-~~~~f~~a~~lr~~~f~~~~~~~~~~~~~~~ 561 (941)
T 3opy_B 483 LQGVEAVNAVLECDADTPSPMIAIKEDQITRVPLVDAVELTQQVAKSI-ESRNFKKAISLRDSEFVEHMKNFISTNSADH 561 (941)
T ss_dssp HHHHHHHHHHHHCCTTSCCEEEEESSSCEEEEEHHHHHHHHHHHHHHH-HTTCHHHHHHHSCHHHHHHHHHHHHHHC-CC
T ss_pred HHHHHHHHHHHcCCCCCCceEEEEECCEEEEEEHHHHHhccCCcHHHH-hcCCHHHHHHccCHHHHHHHHHHHHhccCCC
Confidence 367999999999999999999999999999999999999999999998 67887 7999999876 1
Q ss_pred ccccccCCCCeeEEEEccCCCCchhhHHHHHHHHHHhhhcCCcEEEEEcccccccc-CCCeeeCChhhHhchhccCCcce
Q 019697 135 REKVYFKSDEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFY-SKNTLTLSPKVVNDIHKRGGTIL 213 (337)
Q Consensus 135 r~~~~f~~~~~~iaIvt~GG~apGmNavIr~lv~~l~~~~~~~~v~Gi~~G~~GL~-~~~~~~L~~~~V~~~~~~GGS~L 213 (337)
......+.+++||||+||||||||||++||++|+++.. .+.+||||++||+||+ ++++++|+|++|++|+++|||+|
T Consensus 562 ~~~~~~~~~~~rIgIltsGGdapGmNaaIravv~~a~~--~g~~V~Gi~~G~~GL~~~~~~~~L~~~~V~~i~~~GGTiL 639 (941)
T 3opy_B 562 VPPSLPLEKRKKIAIINVGAPAGGMNSAVYSMATYCMS--RGHVPYAIHNGFSGLARHESVRSINWLDIEGWGSLGGSEI 639 (941)
T ss_dssp SCCSSCGGGCCEEEEEEESSCCTTHHHHHHHHHHHHHH--HTCEEEEETTHHHHHHHHCCEEECCTTTTTTGGGCCSCSS
T ss_pred ccccCCcccCcEEEEEecCCCcHHHHHHHHHHHHHHHH--CCCEEEEEccchHhhCcCCcEEECCHHHHhChhhCCCcEe
Confidence 11111123568999999999999999999999998864 3589999999999999 79999999999999999999999
Q ss_pred eccCCC---CchHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHc-CCceeEEEeeccccCCccccCcccCchhHH
Q 019697 214 RTSRGG---HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKR-GLQVAVAGIPKTIDNDIAVIDKSFGFDTAV 289 (337)
Q Consensus 214 GTsR~~---~d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~-~~~i~VVgIPkTIDNDI~gtD~S~GfdTAv 289 (337)
||+|+. +++++++++|++++||+||+||||||+++|.+|+++++++ ++.|+|||||||||||+++||+|||||||+
T Consensus 640 GTsR~~~~~~~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~~~~~i~vVGIPkTIDNDl~gTD~TiGfdTA~ 719 (941)
T 3opy_B 640 GTNRTLPNDADIGMIAYFFEKYGFDGLILVGGFEAFISLHQLERARINYPSLRIPLVLIPATISNNVPGTEYSLGSDTCL 719 (941)
T ss_dssp CEECCCTTTSCHHHHHHHHHHTTCSEEEEEESHHHHHHHHHHHHGGGTCGGGCSCEEEEEBCSSCCCTTCSCCBTHHHHH
T ss_pred ccCCCCcccchHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHhcCccCCcEEeeeccccCCCCCCCCCCChHHHH
Confidence 999973 3689999999999999999999999999999999876655 467999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhcCCCeEEEEEecCCCccHHHHHHHHccCCCCC
Q 019697 290 EEAQRAINAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVVR 336 (337)
Q Consensus 290 ~~~~~~i~~i~~~A~S~~~rV~iVEvMGR~sG~LA~~aaLAs~~~d~ 336 (337)
++++++|++++++|.|+++||||||+|||+|||||+++|||+|+ |+
T Consensus 720 ~~i~eaid~i~~tA~ssh~RvfiVEvMGR~aG~LAl~agLA~GA-d~ 765 (941)
T 3opy_B 720 NSFMEYCDVIKQSAAATRNRVFVVEVQGGNSGYIATHAQLACGA-QI 765 (941)
T ss_dssp HHHHHHHHHHHHHHHHC-CEEEEEEECSTTCCHHHHHHHHHHTC-SE
T ss_pred HHHHHHHHHHHHHhhhcCCcEEEEEeCCcchhHHHHHHHHhhCC-CE
Confidence 99999999999999987789999999999999999999999975 44
No 6
>3opy_A 6-phosphofructo-1-kinase alpha-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Probab=100.00 E-value=2.3e-63 Score=530.54 Aligned_cols=261 Identities=19% Similarity=0.236 Sum_probs=238.1
Q ss_pred CcccccccchhhcCCCCCCCCCCCCCCcccccccccccccChHHHHHHHhhccC-----CCcccccccC--------cc-
Q 019697 70 GFVLEDVPHLTNFLPDLPSYPNPLKKSQAYAVVKQTFVSPEDAVAQNIVIQKDS-----PRGVHFRRAG--------PR- 135 (337)
Q Consensus 70 ~~~~eaV~~l~~~~p~~p~~~~pL~~n~~~r~~~~~~V~~t~~V~~~~~~~~~~-----~r~~~F~~ag--------pr- 135 (337)
-++.+||.++++..++++.+++.+++|++++.|++++|..++.|.+++ .+|+| +|+++|++++ +.
T Consensus 510 rlG~~AV~~l~~g~~~~~g~mVgl~~~~iv~vPl~e~v~~~k~V~~a~-~~k~f~~a~~lr~~~F~~~~~~~~~~~~~~~ 588 (989)
T 3opy_A 510 VQGVDAVRAVLESTPAIPSPVISILENKIVRQPLVESVAQTKTVSAAI-EAKDFDKALQLRDQEFATSYENFLSVSKYDD 588 (989)
T ss_dssp HHHHHHHHHHHTCCTTSCCEEEEESSSSEEEEEHHHHHHHHHHHHHHH-HTTCHHHHHHTSCHHHHHHHHHHHHHHGGGG
T ss_pred HHHHHHHHHHHcCCCCCCCeEEEEECCEEEEEEHHHHHhccCCchHhh-hccCHHHHHhccChHHHHHHHHHHHhccCCC
Confidence 367899999999999999999999999999999999999999999998 67887 7999999876 11
Q ss_pred -c-ccccCCCCeeEEEEccCCCCchhhHHHHHHHHHHhhhcCCcEEEEEcccccccc-CCCeeeCChhhHhchhccCCcc
Q 019697 136 -E-KVYFKSDEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFY-SKNTLTLSPKVVNDIHKRGGTI 212 (337)
Q Consensus 136 -~-~~~f~~~~~~iaIvt~GG~apGmNavIr~lv~~l~~~~~~~~v~Gi~~G~~GL~-~~~~~~L~~~~V~~~~~~GGS~ 212 (337)
. .++ +.+++||||+||||||||||++||++|+++.+ .+.+||||++||+||+ ++++++|+|+.|++|+++|||+
T Consensus 589 ~~~~~p-~~~~~rIgIltsGGdaPGmNAaIravV~~a~~--~g~~V~Gi~~G~~GLl~~~~~~~L~~~~V~~i~~~GGTi 665 (989)
T 3opy_A 589 GSYLVP-ESSRLNIAIIHVGAPTSALNPATRVATLNSLA--KGHRVFAIRNGFAGLIRHGAVRELNWIDVEDWHNTGGSE 665 (989)
T ss_dssp SSSCCC-GGGCCEEEEEEESSCCTTHHHHHHHHHHHHHH--TTCEEEEETTHHHHHHHHCCEEEECTTTTTTTTTCCSCS
T ss_pred ccccCC-ccCCceEEEEecCCCCHHHHHHHHHHHHHHHH--CCCEEEEEccChhhhcCCCcEEECCHHHhhCHhhCCCcE
Confidence 1 111 23568999999999999999999999998863 4689999999999999 9999999999999999999999
Q ss_pred eeccCCC--CchHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHc-CCceeEEEeeccccCCccccCcccCchhHH
Q 019697 213 LRTSRGG--HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKR-GLQVAVAGIPKTIDNDIAVIDKSFGFDTAV 289 (337)
Q Consensus 213 LGTsR~~--~d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~-~~~i~VVgIPkTIDNDI~gtD~S~GfdTAv 289 (337)
|||+|+. +++++++++|++++||+||+||||||+++|.+|+++++++ .+.|+|||||||||||+++||+|||||||+
T Consensus 666 LGTsR~~~~~~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~y~~~~I~vVGIPkTIDNDl~gTD~TiGFdTAv 745 (989)
T 3opy_A 666 IGTNRSLPSDDMGTVAYYFQQYKFDGLIIIGGFEAFTALYELDAARAQYPIFNIPMCCLPATVSNNVPGTEYSLGSDTCL 745 (989)
T ss_dssp SCCBCCCGGGGHHHHHHHHHHHTCSEEEEEESHHHHHHHHHHHHHTTTCGGGCSCEEEEEBCSSCCCTTCSCCBTHHHHH
T ss_pred eccCCCCchhhHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHhhCCCcCCcEEeccccccCCCCCCcCCCChHHHH
Confidence 9999984 4789999999999999999999999999999999987665 367999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhcCCCeEEEEEecCCCccHHHHHHHHccCCC
Q 019697 290 EEAQRAINAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDV 334 (337)
Q Consensus 290 ~~~~~~i~~i~~~A~S~~~rV~iVEvMGR~sG~LA~~aaLAs~~~ 334 (337)
|.++++|++++++|.|+++||||||+|||+|||||+++|||+|+.
T Consensus 746 n~~~eaId~i~~tA~ssh~RvfIVEVMGR~aG~LAl~agLA~GAd 790 (989)
T 3opy_A 746 NTLSGYCDAVKQSASASRRRTFVVEVQGGYSGYLASYAGLITGAL 790 (989)
T ss_dssp HHHHHHHHHHHHHTC-CCCSEEEEEECCTTCSHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEeCCcchhHHHHHHHHhcCCC
Confidence 999999999999999877899999999999999999999999764
No 7
>2f48_A Diphosphate--fructose-6-phosphate 1-phosphotransf; phosphotransfer, transferase; HET: FBP; 2.11A {Borrelia burgdorferi} SCOP: c.89.1.1 PDB: 1kzh_A*
Probab=100.00 E-value=3.1e-60 Score=486.70 Aligned_cols=248 Identities=25% Similarity=0.418 Sum_probs=209.9
Q ss_pred hhcCCCCCCCCCCCCCCc-ccccccccccccChHHHHHHHhhccCC-----CcccccccCcccccccCCCCeeEEEEccC
Q 019697 80 TNFLPDLPSYPNPLKKSQ-AYAVVKQTFVSPEDAVAQNIVIQKDSP-----RGVHFRRAGPREKVYFKSDEVRACIVTCG 153 (337)
Q Consensus 80 ~~~~p~~p~~~~pL~~n~-~~r~~~~~~V~~t~~V~~~~~~~~~~~-----r~~~F~~agpr~~~~f~~~~~~iaIvt~G 153 (337)
++|.|.+|.. |++.. .++ .+..+.++.+...-...+.|+ +-..|.++.++.+ ..+.+||||+|||
T Consensus 11 ~~~~p~lp~~---l~~~~~~~~---~~~~~~~~~~~~~~~i~~~fp~~~~~p~~~~~~~~~~~~---~~~~~~igIltsG 81 (555)
T 2f48_A 11 QKYIPKLPNI---LKKDFNNIS---LVYGENTEAIQDRQALKEFFKNTYGLPIISFTEGESSLS---FSKALNIGIILSG 81 (555)
T ss_dssp TTCCCCCCGG---GGSCGGGEE---EEECCCCCCSSCHHHHHHHTTTTTTCCCEEEEESCCCCS---CCSCCEEEEEEBS
T ss_pred hcCCCCCCHH---HhCCcccee---eecCCcccCccCHHHHHHhCccccCCCcEEEecCCcccc---cCCCcEEEEECcC
Confidence 4688999886 55411 122 223333333332212233342 4466877655321 3456899999999
Q ss_pred CCCchhhHHHHHHHHHHhhhcCCcEEEEEccccccccCCCeeeCChhhHhchhccCC-cceeccCCCC----chHHHHHH
Q 019697 154 GLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGG-TILRTSRGGH----DTNKIVDN 228 (337)
Q Consensus 154 G~apGmNavIr~lv~~l~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~V~~~~~~GG-S~LGTsR~~~----d~~~iv~~ 228 (337)
|||||||++||++++.+...+++.+||||++||+||+++++++|+|+.|++|+++|| |+|||+|++. ++++++++
T Consensus 82 GdaPGmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~i~~~GGstiLGssR~~~~~~e~~~~~~~~ 161 (555)
T 2f48_A 82 GPAPGGHNVISGVFDAIKKFNPNSKLFGFKGGPLGLLENDKIELTESLINSYRNTGGFDIVSSGRTKIETEEHYNKALFV 161 (555)
T ss_dssp SCCTTHHHHHHHHHHHHHHHCTTCEEEEETTTTHHHHTTCEEEECHHHHHHHTTCCSSTTTCCBCCCCCSHHHHHHHHHH
T ss_pred CCcHhHHHHHHHHHHHHHHhcCCCEEEEEecChHHhcCCCEEECCHHHHHHHHhCCCCcCCCcCCCCCCCHHHHHHHHHH
Confidence 999999999999999987678889999999999999999999999999999999999 7999999954 47899999
Q ss_pred HHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeeccccCCcccc--CcccCchhHHHHHHHHHHHHHHhhhcC
Q 019697 229 IEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVI--DKSFGFDTAVEEAQRAINAAHVEVESV 306 (337)
Q Consensus 229 L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTIDNDI~gt--D~S~GfdTAv~~~~~~i~~i~~~A~S~ 306 (337)
|++++||+||+||||||+++|.+|+++++++++.|+|||||||||||++++ |+|||||||+++++++|++++.||.|+
T Consensus 162 l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~~~~i~vIGiPkTIDNDl~~t~id~tiGFdTA~~~~~~aId~i~~da~s~ 241 (555)
T 2f48_A 162 AKENNLNAIIIIGGDDSNTNAAILAEYFKKNGENIQVIGVPKTIDADLRNDHIEISFGFDSATKIYSELIGNLCRDAMST 241 (555)
T ss_dssp HHHTTCSEEEEEESHHHHHHHHHHHHHHHHTTCCCEEEEEEEETTCCCCCSSCCCCEEHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCEEEEeCCCcHHHHHHHHHHHHHHhCCCCcEEEeccccCCCCCCCcCCCCCChhHHHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999999999999999999877 999999999999999999999999999
Q ss_pred CCeEEEEEecCCCccHHHHHHHHccCCCCCC
Q 019697 307 ENGVGIVKLMGRYSGFISMYATLASRDVVRC 337 (337)
Q Consensus 307 ~~rV~iVEvMGR~sG~LA~~aaLAs~~~d~c 337 (337)
++||||||+|||+|||||+++|||+| +|+|
T Consensus 242 ~~rv~iVEvMGR~aG~lAl~a~LA~g-ad~i 271 (555)
T 2f48_A 242 KKYWHFVKLMGRSASHVALECALKTH-PNIC 271 (555)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHC-CSEE
T ss_pred CCcEEEEEeCCcCHHHHHHHHHhhcC-CCEE
Confidence 88999999999999999999999997 6765
No 8
>1zxx_A 6-phosphofructokinase; allosteric regulation, lactobacillus BU transferase; 1.85A {Lactobacillus delbrueckii subsp}
Probab=100.00 E-value=4.3e-60 Score=457.68 Aligned_cols=183 Identities=31% Similarity=0.455 Sum_probs=172.6
Q ss_pred eeEEEEccCCCCchhhHHHHHHHHHHhhhcCCcEEEEEccccccccCCCeeeCChhhHhchhccCCcceeccCCCC----
Q 019697 145 VRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGH---- 220 (337)
Q Consensus 145 ~~iaIvt~GG~apGmNavIr~lv~~l~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~V~~~~~~GGS~LGTsR~~~---- 220 (337)
+||||+||||||||||++||++++.+.+ .+.+||||++||+||+++++++|+|+.|++|+++|||+|||+|+++
T Consensus 2 k~i~IltsGGdapGmNaair~vv~~a~~--~g~~v~Gi~~G~~GL~~~~~~~l~~~~v~~i~~~GGt~LGssR~~~~~~~ 79 (319)
T 1zxx_A 2 KRIGILTSGGDAPGMNAAVRAVTRVAIA--NGLEVFGIRYGFAGLVAGDIFPLESEDVAHLINVSGTFLYSARYPEFAEE 79 (319)
T ss_dssp CEEEEEECSSCCTTHHHHHHHHHHHHHT--TTCEEEEECTHHHHHHHTCEEECCGGGGTTCTTCCSCTTCCCCCGGGTSH
T ss_pred CEEEEEccCCCchhHHHHHHHHHHHHHH--CCCEEEEEccChHHHcCCCEEECCHHHHHhHHhCCCcccccCCCCccCCH
Confidence 4899999999999999999999999864 4579999999999999999999999999999999999999999863
Q ss_pred -chHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeeccccCCccccCcccCchhHHHHHHHHHHHH
Q 019697 221 -DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAA 299 (337)
Q Consensus 221 -d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTIDNDI~gtD~S~GfdTAv~~~~~~i~~i 299 (337)
++++++++|++++||+|++||||||+++|.+|+++ .++|||||||||||+++||+|||||||+++++++|+++
T Consensus 80 ~~~~~~~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~------~i~vvgiPkTIDNDl~~td~t~GfdTA~~~~~~aid~i 153 (319)
T 1zxx_A 80 EGQLAGIEQLKKHGIDAVVVIGGDGSYHGALQLTRH------GFNSIGLPGTIDNDIPYTDATIGYDTACMTAMDAIDKI 153 (319)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEECHHHHHHHHHHHHT------TCCEEEEEEETTCCCTTCSCCEEHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCEEEEECCchHHHHHHHHHHh------CCCEEEEeecccCCCCCCcCCCCHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999874 58899999999999999999999999999999999999
Q ss_pred HHhhhcCCCeEEEEEecCCCccHHHHHHHHccCCCCCC
Q 019697 300 HVEVESVENGVGIVKLMGRYSGFISMYATLASRDVVRC 337 (337)
Q Consensus 300 ~~~A~S~~~rV~iVEvMGR~sG~LA~~aaLAs~~~d~c 337 (337)
+++|.|++ ||||||+|||+|||||+++|||+| +|+|
T Consensus 154 ~~ta~s~~-rv~iVEvMGR~aG~lAl~a~lA~g-a~~i 189 (319)
T 1zxx_A 154 RDTASSHH-RVFIVNVMGRNCGDIAMRVGVACG-ADAI 189 (319)
T ss_dssp HHHHHHTT-CEEEEEECCTTCCHHHHHHHHHTT-CSEE
T ss_pred HHHHhcCC-CEEEEEeCCCCHHHHHHHHHHhcC-CCEE
Confidence 99999985 899999999999999999999986 6654
No 9
>1pfk_A Phosphofructokinase; transferase(phosphotransferase); HET: FBP ADP; 2.40A {Escherichia coli} SCOP: c.89.1.1 PDB: 2pfk_A
Probab=100.00 E-value=4.9e-60 Score=457.52 Aligned_cols=183 Identities=33% Similarity=0.518 Sum_probs=172.7
Q ss_pred eeEEEEccCCCCchhhHHHHHHHHHHhhhcCCcEEEEEccccccccCCCeeeCChhhHhchhccCCcceeccCCCC----
Q 019697 145 VRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGH---- 220 (337)
Q Consensus 145 ~~iaIvt~GG~apGmNavIr~lv~~l~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~V~~~~~~GGS~LGTsR~~~---- 220 (337)
.||||+||||||||||++||++++.+.+ + +.+||||++||+||+++++++|+|+.|++|+++|||+|||+|+++
T Consensus 3 k~i~IltsGGdapGmNaair~vv~~a~~-~-g~~v~Gi~~G~~GL~~~~~~~l~~~~v~~i~~~GGt~LGssR~~~~~~~ 80 (320)
T 1pfk_A 3 KKIGVLTSGGDAPGMNAAIRGVVRSALT-E-GLEVMGIYDGYLGLYEDRMVQLDRYSVSDMINRGGTFLGSARFPEFRDE 80 (320)
T ss_dssp CEEEEEECSSCCTTHHHHHHHHHHHHHH-T-TCEEEEESTHHHHHHTTCEEEECSGGGTTCTTCCSCTTCCCCCGGGGSH
T ss_pred CEEEEEccCCCchhHHHHHHHHHHHHHH-C-CCEEEEEecChHHhcCCCEEECCHHHHhhHHhCCCCeeccCCCCCCCCH
Confidence 4999999999999999999999998864 3 579999999999999999999999999999999999999999853
Q ss_pred -chHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeeccccCCccccCcccCchhHHHHHHHHHHHH
Q 019697 221 -DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAA 299 (337)
Q Consensus 221 -d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTIDNDI~gtD~S~GfdTAv~~~~~~i~~i 299 (337)
++++++++|++++||+||+||||||+++|++|+++ .++|||||||||||+++||+|||||||+++++++|+++
T Consensus 81 ~~~~~~~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~------~i~vvgiPkTIDNDl~~td~t~GfdTA~~~~~~aid~i 154 (320)
T 1pfk_A 81 NIRAVAIENLKKRGIDALVVIGGDGSYMGAMRLTEM------GFPCIGLPGTIDNDIKGTDYTIGFFTALSTVVEAIDRL 154 (320)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEECHHHHHHHHHHHHT------TCCEEEEEBCTTCCCTTCSCCBTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCchHHHHHHHHhh------CCCEEEEeccccCCCCCCcCCCCHHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999873 58899999999999999999999999999999999999
Q ss_pred HHhhhcCCCeEEEEEecCCCccHHHHHHHHccCCCCCC
Q 019697 300 HVEVESVENGVGIVKLMGRYSGFISMYATLASRDVVRC 337 (337)
Q Consensus 300 ~~~A~S~~~rV~iVEvMGR~sG~LA~~aaLAs~~~d~c 337 (337)
+++|.|++ ||||||+|||+|||||++++||+| +|+|
T Consensus 155 ~~ta~s~~-rv~iVEvMGR~aG~lAl~a~lA~g-a~~i 190 (320)
T 1pfk_A 155 RDTSSSHQ-RISVVEVMGRYCGDLTLAAAIAGG-CEFV 190 (320)
T ss_dssp HHHHHHHT-CEEEEEECCTTCCHHHHHHHHHTT-CSEE
T ss_pred HHHHhcCC-CEEEEEeCCcCHHHHHHHHHHhcC-CCEE
Confidence 99999985 899999999999999999999997 6654
No 10
>4a3s_A 6-phosphofructokinase; transferase, glycolysis, degradosome; 2.30A {Bacillus subtilis} PDB: 6pfk_A 3u39_A 3pfk_A 4pfk_A* 1mto_A*
Probab=100.00 E-value=1.7e-58 Score=446.46 Aligned_cols=182 Identities=35% Similarity=0.521 Sum_probs=170.5
Q ss_pred eeEEEEccCCCCchhhHHHHHHHHHHhhhcCCcEEEEEccccccccCCCeeeCChhhHhchhccCCcceeccCCC-----
Q 019697 145 VRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGG----- 219 (337)
Q Consensus 145 ~~iaIvt~GG~apGmNavIr~lv~~l~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~V~~~~~~GGS~LGTsR~~----- 219 (337)
.|||||||||||||||++||++++.+.+ .+.+|||+++||+||+++++++|+|+.|++|+++|||+|||+|++
T Consensus 2 krIgIltsGG~~pG~Na~ir~vv~~a~~--~g~~v~Gi~~G~~Gl~~~~~~~l~~~~v~~i~~~GGt~lgtsR~~~~~~~ 79 (319)
T 4a3s_A 2 KRIGVLTSGGDSPGMNAAVRAVVRKAIY--HDVEVYGIYNGYAGLISGKIEKLELGSVGDIIHRGGTKLYTARCPEFKTV 79 (319)
T ss_dssp CEEEEEEESSCCTTHHHHHHHHHHHHHH--TTCEEEEECSTTHHHHHCCEEEECGGGGTTCTTCCSCTTCCCCCHHHHSH
T ss_pred CEEEEECcCCCcHHHHHHHHHHHHHHHH--CCCEEEEEecchHHHcCCCeecCCHHHHHhHHhcCCCccccCCCCccccH
Confidence 3899999999999999999999998853 567999999999999999999999999999999999999999984
Q ss_pred CchHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeeccccCCccccCcccCchhHHHHHHHHHHHH
Q 019697 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAA 299 (337)
Q Consensus 220 ~d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTIDNDI~gtD~S~GfdTAv~~~~~~i~~i 299 (337)
+++++++++|++++||+||+||||||+++|.+|+|+ .++|||||||||||+++||+|||||||+++++++|+++
T Consensus 80 e~~~~~~~~l~~~~Id~L~~IGGdgS~~~a~~l~~~------~i~vigiPkTIDNDl~~td~t~GfdTA~~~~~~ai~~i 153 (319)
T 4a3s_A 80 EGREKGIANLKKLGIEGLVVIGGDGSYMGAKKLTEH------GFPCVGVPGTIDNDIPGTDFTIGFDTALNTVIDAIDKI 153 (319)
T ss_dssp HHHHHHHHHHHHHTCCEEEEEECTTHHHHHHHHHHT------TCCEEEEEEETTCCCTTCSCCEEHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcHHHHHHHHHhcc------CCcEEEeeccccCCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 468999999999999999999999999999999874 47899999999999999999999999999999999999
Q ss_pred HHhhhcCCCeEEEEEecCCCccHHHHHHHHccCCCCC
Q 019697 300 HVEVESVENGVGIVKLMGRYSGFISMYATLASRDVVR 336 (337)
Q Consensus 300 ~~~A~S~~~rV~iVEvMGR~sG~LA~~aaLAs~~~d~ 336 (337)
+++|.|+ +||||||+|||+|||||++++||+++ |+
T Consensus 154 ~~~a~s~-~rv~ivEvMGR~aG~lA~~a~la~ga-~~ 188 (319)
T 4a3s_A 154 RDTATSH-ERTYVIEVMGRHAGDIALWAGLAGGA-ES 188 (319)
T ss_dssp HHHHHHH-TCEEEEEECCTTCCHHHHHHHHHHTC-SE
T ss_pred Hhhhhcc-CCeEEEEeCCcchhHHHHHHHhccCC-CE
Confidence 9999887 57999999999999999999999864 44
No 11
>3hno_A Pyrophosphate-dependent phosphofructokinase; structural genomics, PSI-2, protein structure initiative; 2.00A {Nitrosospira multiformis atcc 25196} PDB: 3k2q_A
Probab=100.00 E-value=1.4e-57 Score=454.08 Aligned_cols=194 Identities=19% Similarity=0.285 Sum_probs=175.5
Q ss_pred CeeEEEEccCCCCchhhHHHHHHHHHHhhhcC-CcEEEEEccccccccCCCeeeC---ChhhHhchhccCCcceeccCCC
Q 019697 144 EVRACIVTCGGLCPGINTVIREIVCGLSYMYG-VDEILGIEGGYRGFYSKNTLTL---SPKVVNDIHKRGGTILRTSRGG 219 (337)
Q Consensus 144 ~~~iaIvt~GG~apGmNavIr~lv~~l~~~~~-~~~v~Gi~~G~~GL~~~~~~~L---~~~~V~~~~~~GGS~LGTsR~~ 219 (337)
+.||+|+||||||||||++||++|+.+.+... ..+||||++||+||+++++++| +|+.|++|+++|||+|||+|++
T Consensus 3 ~kni~VltsGGdapGmNa~Ir~vv~~a~~~g~~~~~V~Gi~~G~~GLl~~~~~~l~~~~~~~v~~i~~~GGtiLGSsR~~ 82 (419)
T 3hno_A 3 AKNAFYAQSGGVTAVINASAAGVIEAARKQSGKIGRIYAGRNGIIGALTEDLIDTGQESDAAISALRYTPSGAFGSCRYK 82 (419)
T ss_dssp CCEEEEEECSSCCSSHHHHHHHHHHHHHHHCSSCCCEEEETTTHHHHHTTCEEEGGGSCHHHHHHGGGCCSCTTCCCCCC
T ss_pred CceEEEEccCCChHHHHHHHHHHHHHHHHcCCCCcEEEEEeCChHHhCCCCcccCccccHHHHHHHHcCCCceecCCCCC
Confidence 35999999999999999999999998875322 2399999999999999999988 5568999999999999999985
Q ss_pred C--------chHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeeccccCCccccCcccCchhHHHH
Q 019697 220 H--------DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEE 291 (337)
Q Consensus 220 ~--------d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTIDNDI~gtD~S~GfdTAv~~ 291 (337)
. ++++++++|++++||+||+||||||+++|.+|++++++++++++|||||||||||+++||+|||||||+++
T Consensus 83 ~~~~~~~~~~~~~~~~~l~~~~Id~Lv~IGGdgS~~~A~~L~~~~~~~g~~i~vIGiPkTIDNDl~~tD~t~GFdTA~~~ 162 (419)
T 3hno_A 83 LKSLEQNRREYERLIEVFKAHDIGYFFYNGGGDSADTCLKVSQLSGTLGYPIQAIHVPKTVDNDLPITDCCPGFGSVAKY 162 (419)
T ss_dssp ------CHHHHHHHHHHHHHTTEEEEEEEESHHHHHHHHHHHHHHHHTTCCCEEEEEECCTTCCCSSSSSCTTHHHHHHH
T ss_pred ccccccCHHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHHhCCCccEEEecccccCCCcCCCCCCCchHHHHH
Confidence 3 47899999999999999999999999999999999999899999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhcCCC---eEEEEEecCCCccHHHHHHHHcc----CCCCCC
Q 019697 292 AQRAINAAHVEVESVEN---GVGIVKLMGRYSGFISMYATLAS----RDVVRC 337 (337)
Q Consensus 292 ~~~~i~~i~~~A~S~~~---rV~iVEvMGR~sG~LA~~aaLAs----~~~d~c 337 (337)
++++|+++..++.++++ ||||||+|||+|||||+++|||+ +.+|+|
T Consensus 163 ~~~~i~~~~~d~~ss~~sh~rv~iVEvMGR~aG~lAl~aglA~~~~~~gad~i 215 (419)
T 3hno_A 163 IAVSTLEASFDVASMSATSTKVFVLEVMGRHAGWIAAAGGLASSPEREIPVVI 215 (419)
T ss_dssp HHHHHHHHHHHHHHHTTTSCCEEEEEECCSSCCHHHHGGGGGCCSSSCCCEEE
T ss_pred HHHHHHHHHHHHHhhccCCCcEEEEEcCCcChhHHHHHHHHhcccCCCCceEE
Confidence 99999999766665554 89999999999999999999997 356653
No 12
>3o8l_A 6-phosphofructokinase, muscle type; transferase; HET: ATP ADP; 3.20A {Oryctolagus cuniculus} PDB: 3o8n_A*
Probab=100.00 E-value=3.2e-55 Score=462.17 Aligned_cols=191 Identities=23% Similarity=0.401 Sum_probs=176.0
Q ss_pred CCeeEEEEccCCCCchhhHHHHHHHHHHhhhcCCcEEEEEccccccccCC--CeeeCChhhHhchhccCCcceeccCCCC
Q 019697 143 DEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSK--NTLTLSPKVVNDIHKRGGTILRTSRGGH 220 (337)
Q Consensus 143 ~~~~iaIvt~GG~apGmNavIr~lv~~l~~~~~~~~v~Gi~~G~~GL~~~--~~~~L~~~~V~~~~~~GGS~LGTsR~~~ 220 (337)
+..||||+||||||||||++||++|+.+. +.+.+||||++||+||+++ ++++|+|++|++|+++|||+|||+|+++
T Consensus 14 ~~krIaIltsGGdaPGmNaaIravvr~a~--~~g~~V~Gi~~G~~GL~~~~~~~~~l~~~~v~~i~~~GGTiLGSsR~~~ 91 (762)
T 3o8l_A 14 VGKAIAVLTSGGDAQGMNAAVRAVVRVGI--FTGARVFFVHEGYQGLVDGGDHIREATWESVSMMLQLGGTVIGSARCKD 91 (762)
T ss_dssp SSCEEEEECCSSCCTTHHHHHHHHHHHHH--HTTCEEECCSTHHHHHHSCGGGCCBCCSGGGTTCTTCCSCSSCCCCCCG
T ss_pred cCcEEEEEccCCCchhHhHHHHHHHHHHH--HCCCEEEEEecChhhhhcCCCcEEECCHHHHHhHHhCCCccccCCCCCc
Confidence 45699999999999999999999999775 4568999999999999999 8999999999999999999999999863
Q ss_pred -----chHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHH-----------------HHHcCCceeEEEeeccccCCccc
Q 019697 221 -----DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKE-----------------VEKRGLQVAVAGIPKTIDNDIAV 278 (337)
Q Consensus 221 -----d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~-----------------~~~~~~~i~VVgIPkTIDNDI~g 278 (337)
++++++++|++++||+||+||||||+++|..|+++ .+++++.++|||||||||||+++
T Consensus 92 f~~~~~~~~~~~~l~~~~Id~LvvIGGdgS~~gA~~l~~e~~~ll~eL~~~g~i~~~~~~~~~~i~vVGIPkTIDNDl~g 171 (762)
T 3o8l_A 92 FREREGRLRAAHNLVKRGITNLCVIGGDGSLTGADTFRSEWSDLLSDLQKAGKITAEEATRSSYLNIVGLVGSIDNDFCG 171 (762)
T ss_dssp GGSHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHTTHHHHHHTTTTTSCTTTGGGSTTCCEEEEEEBCTTCCCSS
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHhHHHHHHHHhccchhHHHHhcCCCCCeEEeecCcccCCCC
Confidence 47899999999999999999999999999988664 23446689999999999999999
Q ss_pred cCcccCchhHHHHHHHHHHHHHHhhhcCCCeEEEEEecCCCccHHHHHHHHccCCCCCC
Q 019697 279 IDKSFGFDTAVEEAQRAINAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVVRC 337 (337)
Q Consensus 279 tD~S~GfdTAv~~~~~~i~~i~~~A~S~~~rV~iVEvMGR~sG~LA~~aaLAs~~~d~c 337 (337)
||+|||||||+++++++|++++++|.|++ ||||||+|||+|||||+++|||+| +|+|
T Consensus 172 TD~TiGfdTA~~~i~eaid~i~~tA~Sh~-Rv~iVEvMGR~aG~LAl~aglA~g-ad~i 228 (762)
T 3o8l_A 172 TDMTIGTDSALHRITEIVDAITTTAQSHQ-RTFVLEVMGRHCGYLALVTSLSCG-ADWV 228 (762)
T ss_dssp CSCCBTHHHHHHHHHHHHHHHHTTCCSSC-CEEEEEECCSSCCHHHHHHHHHHT-CSBC
T ss_pred CcCCcCchhHHHHHHHHHHHHHHhhhcCc-cEEEEEeCCcchhHHHHHHHHhcC-CCEE
Confidence 99999999999999999999999999974 799999999999999999999986 6765
No 13
>3o8o_B 6-phosphofructokinase subunit beta; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-54 Score=457.31 Aligned_cols=190 Identities=24% Similarity=0.378 Sum_probs=173.3
Q ss_pred CeeEEEEccCCCCchhhHHHHHHHHHHhhhcCCcEEEEEccccccccCCC---eeeCChhhHhchhccCCcceeccCCCC
Q 019697 144 EVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKN---TLTLSPKVVNDIHKRGGTILRTSRGGH 220 (337)
Q Consensus 144 ~~~iaIvt~GG~apGmNavIr~lv~~l~~~~~~~~v~Gi~~G~~GL~~~~---~~~L~~~~V~~~~~~GGS~LGTsR~~~ 220 (337)
++||||+||||||||||++||++|+.+.+ .+.+||||++||+||++++ +.+|+|++|++|+++|||+|||+|+++
T Consensus 3 ~krIgIltsGGdapGmNaaIravvr~a~~--~g~~V~Gi~~G~~GL~~~~~~~i~~l~~~~V~~i~~~GGTiLGTsR~~~ 80 (766)
T 3o8o_B 3 QKAIAVMTSGGDAPGMNSNVRAIVRSAIF--KGCRAFVVMEGYEGLVRGGPEYIKEFHWEDVRGWSAEGGTNIGTARCME 80 (766)
T ss_dssp CCEEEEEEESSCCTTHHHHHHHHHHHHHH--HTCEEEEETTHHHHHHSCSTTTEEEECGGGGTTGGGCCSCTTCCCCCSG
T ss_pred CcEEEEEeeCCCchhHHHHHHHHHHHHHH--CCCEEEEEeCChHHHhcCCcccEEECCHHHHhhHHhCCCceeccCCCCc
Confidence 46999999999999999999999998864 3579999999999999986 789999999999999999999999853
Q ss_pred -----chHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHH-----------------HHHcCCceeEEEeeccccCCccc
Q 019697 221 -----DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKE-----------------VEKRGLQVAVAGIPKTIDNDIAV 278 (337)
Q Consensus 221 -----d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~-----------------~~~~~~~i~VVgIPkTIDNDI~g 278 (337)
++.+++++|++++||+||+||||||+++|.+|+++ ..+++..++|||||||||||+++
T Consensus 81 ~~~~~~~~~~~~~l~~~~Id~LvvIGGdgS~~~A~~l~~e~~~l~~eL~~~~~is~e~~~~~~~i~vVGiPkTIDNDl~g 160 (766)
T 3o8o_B 81 FKKREGRLLGAQHLIEAGVDALIVCGGDGSLTGADLFRSEWPSLIEELLKTNRISNEQYERMKHLNICGTVGSIDNDMST 160 (766)
T ss_dssp GGSHHHHHHHHHHHHHHTCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHTCCCEEEEEEBCTTCCCTT
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEEeCCChhHHHHHHHHHhhhHHHHHHHhcccccHHHHhcCCCCcEEEEeccccCCCCC
Confidence 35789999999999999999999999999988653 23345678999999999999999
Q ss_pred cCcccCchhHHHHHHHHHHHHHHhhhcCCCeEEEEEecCCCccHHHHHHHHccCCCCCC
Q 019697 279 IDKSFGFDTAVEEAQRAINAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVVRC 337 (337)
Q Consensus 279 tD~S~GfdTAv~~~~~~i~~i~~~A~S~~~rV~iVEvMGR~sG~LA~~aaLAs~~~d~c 337 (337)
||+|||||||+++++++|++++++|.|+ +||||||+|||+|||||+++|||+| +|+|
T Consensus 161 TD~TiGfdTA~~~i~eaid~i~~tA~Sh-~RvfvVEvMGR~aG~LAl~aglA~g-Ad~i 217 (766)
T 3o8o_B 161 TDATIGAYSALDRICKAIDYVEATANSH-SRAFVVEVMGRNCGWLALLAGIATS-ADYI 217 (766)
T ss_dssp CSCCBTHHHHHHHHHHHHHHHHHHHHHT-TCEEEEEECCTTCCHHHHHHHHHHT-CSEE
T ss_pred CCCCCChhHHHHHHHHHHHHHHhhhhcc-CceEEEEcCCcchhHHHHHHHHhcC-CCEE
Confidence 9999999999999999999999999987 4799999999999999999999997 6654
No 14
>3o8o_A 6-phosphofructokinase subunit alpha; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.7e-55 Score=459.92 Aligned_cols=191 Identities=24% Similarity=0.389 Sum_probs=173.3
Q ss_pred CCeeEEEEccCCCCchhhHHHHHHHHHHhhhcCCcEEEEEccccccccCC--CeeeCChhhHhchhccCCcceeccCCCC
Q 019697 143 DEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSK--NTLTLSPKVVNDIHKRGGTILRTSRGGH 220 (337)
Q Consensus 143 ~~~~iaIvt~GG~apGmNavIr~lv~~l~~~~~~~~v~Gi~~G~~GL~~~--~~~~L~~~~V~~~~~~GGS~LGTsR~~~ 220 (337)
++.||||+||||||||||++||++|+.+.+ .+.+||||++||+||+++ ++.+|+|++|++|+++|||+|||+|+++
T Consensus 4 ~~krIgIltsGGdaPGmNaaIravvr~a~~--~g~~V~Gi~~G~~GL~~~~~~i~~l~~~~V~~i~~~GGTiLGTsR~~~ 81 (787)
T 3o8o_A 4 KKKKIAVMTSGGDSPGMNAAVRAVVRTGIH--FGCDVFAVYEGYEGLLRGGKYLKKMAWEDVRGWLSEGGTLIGTARSME 81 (787)
T ss_dssp -CCEEEEEEESSCCTTHHHHHHHHHHHHHH--TTCEEEEETTHHHHHHHCTTSEEECCGGGGTTGGGCCSCTTCCCCCSG
T ss_pred CCcEEEEEeeCCCchhHHHHHHHHHHHHHH--CCCEEEEEecChHHhcCCCCCeEECCHHHHhhHHhCCCceeccCCCCc
Confidence 457999999999999999999999998863 457999999999999987 6999999999999999999999999853
Q ss_pred -----chHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHH-------H----------HHcCCceeEEEeeccccCCccc
Q 019697 221 -----DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKE-------V----------EKRGLQVAVAGIPKTIDNDIAV 278 (337)
Q Consensus 221 -----d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~-------~----------~~~~~~i~VVgIPkTIDNDI~g 278 (337)
+..+++++|++++||+||+||||||+++|.+|+++ + .+++..++|||||||||||+++
T Consensus 82 f~~~~~~~~~~~~l~~~~Id~LvvIGGdgS~~~A~~l~~e~~~l~~eL~~~~~is~e~~~~~~~i~vVGIPkTIDNDl~g 161 (787)
T 3o8o_A 82 FRKREGRRQAAGNLISQGIDALVVCGGDGSLTGADLFRHEWPSLVDELVAEGRFTKEEVAPYKNLSIVGLVGSIDNDMSG 161 (787)
T ss_dssp GGSHHHHHHHHHHHHHHTEEEEEEEECHHHHHHHHHHHTTHHHHHHHHHSSSSCCTTTTTTTCSCEEEEEEEESSCCCTT
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHhhHHHHHHHHhcccccHHHHhcCCCCcEEEEeecCcCCCCC
Confidence 35789999999999999999999999999987643 2 2234679999999999999999
Q ss_pred cCcccCchhHHHHHHHHHHHHHHhhhcCCCeEEEEEecCCCccHHHHHHHHccCCCCCC
Q 019697 279 IDKSFGFDTAVEEAQRAINAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVVRC 337 (337)
Q Consensus 279 tD~S~GfdTAv~~~~~~i~~i~~~A~S~~~rV~iVEvMGR~sG~LA~~aaLAs~~~d~c 337 (337)
||+|||||||+++++++|++++++|.|+ +||||||+|||+|||||+++|||+| +|+|
T Consensus 162 TD~TiGfdTAl~~i~eaid~i~~tA~Sh-~RvfvVEVMGR~aG~LAl~agLA~g-Ad~i 218 (787)
T 3o8o_A 162 TDSTIGAYSALERICEMVDYIDATAKSH-SRAFVVEVMGRHCGWLALMAGIATG-ADYI 218 (787)
T ss_dssp SSCCEEHHHHHHHHHHHHHHHHHHHHHT-TCEEEEEECCTTCCHHHHHHHHHTT-CSEE
T ss_pred CCCCCCcHHHHHHHHHHHHHHHhhhhcc-CceEEEEcCCcchhHHHHHHHHhhC-CCEE
Confidence 9999999999999999999999999997 5799999999999999999999986 6654
No 15
>3opy_A 6-phosphofructo-1-kinase alpha-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Probab=100.00 E-value=3.4e-54 Score=460.07 Aligned_cols=191 Identities=24% Similarity=0.375 Sum_probs=174.3
Q ss_pred CCeeEEEEccCCCCchhhHHHHHHHHHHhhhcCCcEEEEEccccccccCC--CeeeCChhhHhchhccCCcceeccCCCC
Q 019697 143 DEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSK--NTLTLSPKVVNDIHKRGGTILRTSRGGH 220 (337)
Q Consensus 143 ~~~~iaIvt~GG~apGmNavIr~lv~~l~~~~~~~~v~Gi~~G~~GL~~~--~~~~L~~~~V~~~~~~GGS~LGTsR~~~ 220 (337)
..+||||+||||||||||++||++|+.+.. .+.+||||++||+||+++ ++++|+|++|++|+++|||+|||+|++.
T Consensus 209 ~~krIaIlTSGGdaPGmNAaIRaVVr~a~~--~G~~V~Gi~~Gy~GLl~g~~~i~~L~~~~V~~i~~~GGTiLGTsR~~~ 286 (989)
T 3opy_A 209 GKKKIAIITSGGDAPGMNAAVRAVTRAGIF--YGCKVYACYEGYTGLVKGGDMLKELQWQDVRGLLSIGGTIIGTARCKE 286 (989)
T ss_dssp CSEEEEEEECSSCCTTHHHHHHHHHHHHHH--TTEEEEEECTHHHHHHSCSTTEEEECTTTTTTGGGCCSCSSCCCCSSS
T ss_pred cCCEEEEEeeCCCchhHHHHHHHHHHHHHH--CCCEEEEEecChHHhcCCCCCeEECCHHHHhhHHhCCCccccCCCCCc
Confidence 457999999999999999999999998863 457999999999999997 5899999999999999999999999853
Q ss_pred -----chHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHH-----------------HHcCCceeEEEeeccccCCccc
Q 019697 221 -----DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEV-----------------EKRGLQVAVAGIPKTIDNDIAV 278 (337)
Q Consensus 221 -----d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~-----------------~~~~~~i~VVgIPkTIDNDI~g 278 (337)
++++++++|++++||+||+||||||+++|.+|+++. .+.+..++|||||||||||+++
T Consensus 287 f~~~e~~~~~~~~L~~~gId~LvvIGGDGS~~gA~~L~~e~~~l~~eL~~~gkls~~~~~~~~~i~VVGIPkTIDNDl~g 366 (989)
T 3opy_A 287 FRERWGRLQACYNMVSNGIDALVVCGGDGSLTGADLFRKEWPELIKELLGEDKITKEQYETHRNLTIVGLVGSIDNDMCG 366 (989)
T ss_dssp TTSHHHHHHHHHHHHHTTCCEEEEEECHHHHHHHHHHHHHTTCCCCC--------CHHHHHTTSCEEEEEEEESSCCCTT
T ss_pred ccchhHHHHHHHHHHHcCCCEEEEeCCChhhHHHHHHHHHhhHHHHHHHHccccchhhhhccCCCcEEEEeecccCCCCC
Confidence 368999999999999999999999999999987641 2224679999999999999999
Q ss_pred cCcccCchhHHHHHHHHHHHHHHhhhcCCCeEEEEEecCCCccHHHHHHHHccCCCCCC
Q 019697 279 IDKSFGFDTAVEEAQRAINAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVVRC 337 (337)
Q Consensus 279 tD~S~GfdTAv~~~~~~i~~i~~~A~S~~~rV~iVEvMGR~sG~LA~~aaLAs~~~d~c 337 (337)
||+|||||||+++++++|++++++|.|+ +||||||+|||+|||||+++|||+| +|+|
T Consensus 367 TD~TiGFdTAl~~i~eaId~I~~TA~Sh-~RvfVVEVMGR~aG~LAl~agLA~G-Ad~I 423 (989)
T 3opy_A 367 TDSTIGAYSSLERIIELVDYIDATAASH-SRAFVVEVMGRHCGWLGLMSGIATG-ADYI 423 (989)
T ss_dssp CSCCEEHHHHHHHHHHHHHHHHSSCCCT-TEEEEEECCCSSCTHHHHHHHHHHT-CSEE
T ss_pred CCCCCChhhHHHHHHHHHHHHHhhhhcc-CceEEEEcCCCchhHHHHHHHHhcC-CCEE
Confidence 9999999999999999999999999986 5899999999999999999999996 6654
No 16
>3opy_B 6-phosphofructo-1-kinase beta-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Probab=100.00 E-value=4.7e-54 Score=459.25 Aligned_cols=191 Identities=26% Similarity=0.369 Sum_probs=173.3
Q ss_pred CCeeEEEEccCCCCchhhHHHHHHHHHHhhhcCCcEEEEEccccccccCCC---eeeCChhhHhchhccCCcceeccCCC
Q 019697 143 DEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKN---TLTLSPKVVNDIHKRGGTILRTSRGG 219 (337)
Q Consensus 143 ~~~~iaIvt~GG~apGmNavIr~lv~~l~~~~~~~~v~Gi~~G~~GL~~~~---~~~L~~~~V~~~~~~GGS~LGTsR~~ 219 (337)
+.+||||+||||||||||++||++|+.+.+ .+.+||||++||+||++++ +.+|+|++|++|+++|||+|||+|++
T Consensus 180 ~~krIgIlTsGGdaPGmNAaIRaVVr~a~~--~g~~V~Gi~~Gy~GLl~g~~~~i~~l~~~~V~~i~~~GGTiLGSsR~~ 257 (941)
T 3opy_B 180 VRKTIGVMTSGGDSPGMNPFVRAVVRAGIY--KGCKVFCIHEGYEGLVRGGEKYIKETQWHDVRGWLVEGGTNIGTARCK 257 (941)
T ss_dssp CCCCEEEEECSSCCTTHHHHHHHHHHHHHH--TTCCEEEETTHHHHHHHCSTTTEEEECGGGGTTTTTCCSCSSCCCCCS
T ss_pred cCCEEEEEeeCcCchhHHHHHHHHHHHHHH--CCCEEEEEeCChHHhccCCcceEEECCHHHHHhHHhCCCceeccCCCC
Confidence 357999999999999999999999998863 4579999999999999986 78999999999999999999999985
Q ss_pred C-----chHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHH-----------------HHHHcCCceeEEEeeccccCCcc
Q 019697 220 H-----DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYK-----------------EVEKRGLQVAVAGIPKTIDNDIA 277 (337)
Q Consensus 220 ~-----d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e-----------------~~~~~~~~i~VVgIPkTIDNDI~ 277 (337)
+ +..+++++|++++||+||+||||||+++|..|++ +..+++..++|||||||||||++
T Consensus 258 ~f~~~~~~~~~~~~L~~~gId~LvvIGGDGS~~gA~~l~~e~~~l~~eL~~~gkis~e~~~~~~~i~VVGIPkTIDNDl~ 337 (941)
T 3opy_B 258 EFRERSGRLKACKNMIDMGIDALIVCGGDGSLTGADRFRSEWPSLIEELLQTEQISQQQFNTHQNLNICGAVGSIDNDMS 337 (941)
T ss_dssp GGGSHHHHHHHHHHHHHHTCCEEEEEECHHHHHHHHHHHHTCCCCCCC--------CHHHHHTCSCEEEEEEEESSCCCS
T ss_pred cccCHHHHHHHHHHHHHcCCCEEEEeCCChhHHHHHHHHHhhhHHHHHHHhhccccHHHHhcCCCCcEEEEeecccCCCC
Confidence 3 3578999999999999999999999999998764 23445667999999999999999
Q ss_pred ccCcccCchhHHHHHHHHHHHHHHhhhcCCCeEEEEEecCCCccHHHHHHHHccCCCCCC
Q 019697 278 VIDKSFGFDTAVEEAQRAINAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVVRC 337 (337)
Q Consensus 278 gtD~S~GfdTAv~~~~~~i~~i~~~A~S~~~rV~iVEvMGR~sG~LA~~aaLAs~~~d~c 337 (337)
+||+|||||||+++++++|++++++|.|+ +||||||+|||+|||||+++|||+| +|+|
T Consensus 338 gTD~TiGfdTAv~~i~eaId~I~~tA~Sh-~RvfvVEVMGR~aG~LAl~agLA~G-Ad~I 395 (941)
T 3opy_B 338 STDATIGAFSSLDRICRAIDYIDATANSH-SRAFIVEVMGRHCGWLGLLAGLATS-ADYI 395 (941)
T ss_dssp SCSSCEEHHHHHHHHHHHHHHHHSCC-CC-SEEEEEECCCSSCCHHHHHHHHHTT-CSEE
T ss_pred CCCCCCChHHHHHHHHHHHHHHHhhhhcc-CceEEEEcCCCcccHHHHHHHHhcC-CCEE
Confidence 99999999999999999999999999987 5799999999999999999999986 6654
No 17
>2an1_A Putative kinase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, transferase; 2.00A {Salmonella typhimurium}
Probab=95.16 E-value=0.026 Score=52.37 Aligned_cols=89 Identities=18% Similarity=0.091 Sum_probs=49.8
Q ss_pred eeEEEEccCCCCchhhHHHHHHHHHHhhhcCCcEEEEEccccccccCCCeeeCChhhHhchhccCCcceeccCCCCchHH
Q 019697 145 VRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTNK 224 (337)
Q Consensus 145 ~~iaIvt~GG~apGmNavIr~lv~~l~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~V~~~~~~GGS~LGTsR~~~d~~~ 224 (337)
.|++|+.-.+ .+..+..++.+.+.+.+ .+.+++.......++- ..|. .....+.
T Consensus 6 kki~ii~np~-~~~~~~~~~~i~~~l~~--~g~~v~~~~~~~~~~~-----------------~~~~------~~~~~~~ 59 (292)
T 2an1_A 6 KCIGIVGHPR-HPTALTTHEMLYRWLCD--QGYEVIVEQQIAHELQ-----------------LKNV------PTGTLAE 59 (292)
T ss_dssp CEEEEECC--------CHHHHHHHHHHH--TTCEEEEEHHHHHHTT-----------------CSSC------CEECHHH
T ss_pred cEEEEEEcCC-CHHHHHHHHHHHHHHHH--CCCEEEEecchhhhcc-----------------cccc------cccchhh
Confidence 3788888754 36677788888888864 2346665443322210 0010 0001111
Q ss_pred HHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEee
Q 019697 225 IVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIP 269 (337)
Q Consensus 225 iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIP 269 (337)
...+.|.++++|||||+..+..... +..++++|||
T Consensus 60 -----~~~~~D~vi~~GGDGT~l~a~~~~~-----~~~~P~lGI~ 94 (292)
T 2an1_A 60 -----IGQQADLAVVVGGDGNMLGAARTLA-----RYDINVIGIN 94 (292)
T ss_dssp -----HHHHCSEEEECSCHHHHHHHHHHHT-----TSSCEEEEBC
T ss_pred -----cccCCCEEEEEcCcHHHHHHHHHhh-----cCCCCEEEEE
Confidence 2346899999999999887765432 2357899998
No 18
>2i2c_A Probable inorganic polyphosphate/ATP-NAD kinase 1; NADP bound of lmnadk1, transferase; HET: DTA PG4; 1.85A {Listeria monocytogenes egd-e} PDB: 2i1w_A* 2i2a_A* 2i2b_A* 2i29_A* 2i2d_A* 2i2e_A* 3v7u_A* 3v7w_A* 3v7y_A* 3v80_A* 3v8m_A* 3v8n_A* 3v8p_A* 4dy6_A* 2i2f_A* 2q5f_A* 3v8q_A* 3v8r_A*
Probab=94.30 E-value=0.025 Score=52.39 Aligned_cols=45 Identities=29% Similarity=0.347 Sum_probs=30.3
Q ss_pred HHHHHHHHHh-------CCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeec
Q 019697 223 NKIVDNIEDR-------GINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPK 270 (337)
Q Consensus 223 ~~iv~~L~~~-------~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPk 270 (337)
+++.+.|+++ +.|.++++|||||+..+..... ...-.++++|||.
T Consensus 18 ~~l~~~l~~~g~~v~~~~~D~vv~lGGDGT~l~aa~~~~---~~~~~~PilGIn~ 69 (272)
T 2i2c_A 18 LNMIAGFGEYDMEYDDVEPEIVISIGGDGTFLSAFHQYE---ERLDEIAFIGIHT 69 (272)
T ss_dssp HHHHHHHTTSSCEECSSSCSEEEEEESHHHHHHHHHHTG---GGTTTCEEEEEES
T ss_pred HHHHHHHHHCCCEeCCCCCCEEEEEcCcHHHHHHHHHHh---hcCCCCCEEEEeC
Confidence 4444555554 4599999999999887665432 1112688999984
No 19
>1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding, structural genomics, NADP, PSI, protein structure initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus} SCOP: e.52.1.1 PDB: 1z0u_A* 1z0z_A* 1suw_A*
Probab=93.14 E-value=0.036 Score=52.35 Aligned_cols=64 Identities=20% Similarity=0.255 Sum_probs=44.7
Q ss_pred hHHHHHHHHHh---------------CCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeeccccCCccccCcccCch
Q 019697 222 TNKIVDNIEDR---------------GINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFD 286 (337)
Q Consensus 222 ~~~iv~~L~~~---------------~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTIDNDI~gtD~S~Gfd 286 (337)
.+++.+.|+++ +.|.++++|||||+..|..... +. +||+||.. -++||-
T Consensus 42 ~~~l~~~L~~~g~~v~~~~~~~~~~~~~DlvIvlGGDGT~L~aa~~~~-----~~-~PilGIN~----------G~lGFL 105 (278)
T 1z0s_A 42 VKRIEEALKRLEVEVELFNQPSEELENFDFIVSVGGDGTILRILQKLK-----RC-PPIFGINT----------GRVGLL 105 (278)
T ss_dssp HHHHHHHHHHTTCEEEEESSCCGGGGGSSEEEEEECHHHHHHHHTTCS-----SC-CCEEEEEC----------SSSCTT
T ss_pred HHHHHHHHHHCCCEEEEccccccccCCCCEEEEECCCHHHHHHHHHhC-----CC-CcEEEECC----------CCCccc
Confidence 66677777776 4588999999999976654321 23 89999984 288888
Q ss_pred hHH--HHHHHHHHHHHH
Q 019697 287 TAV--EEAQRAINAAHV 301 (337)
Q Consensus 287 TAv--~~~~~~i~~i~~ 301 (337)
|.+ +.+.++++.+..
T Consensus 106 t~~~~~~~~~~l~~l~~ 122 (278)
T 1z0s_A 106 THASPENFEVELKKAVE 122 (278)
T ss_dssp CCBBTTBCHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHh
Confidence 765 344556666554
No 20
>1yt5_A Inorganic polyphosphate/ATP-NAD kinase; domain 1: alpha/beta domain2: beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima}
Probab=87.73 E-value=0.15 Score=46.73 Aligned_cols=53 Identities=25% Similarity=0.348 Sum_probs=34.6
Q ss_pred hCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeeccccCCccccCcccCchhHH--HHHHHHHHHHH
Q 019697 232 RGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAV--EEAQRAINAAH 300 (337)
Q Consensus 232 ~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTIDNDI~gtD~S~GfdTAv--~~~~~~i~~i~ 300 (337)
.+.|.++++|||||+-.+..... + .++++||+. | ++||-+.+ +.+.++++.+.
T Consensus 40 ~~~D~vv~~GGDGTll~~a~~~~-----~-~~PilGIn~-------G---~~Gfl~~~~~~~~~~al~~i~ 94 (258)
T 1yt5_A 40 VTADLIVVVGGDGTVLKAAKKAA-----D-GTPMVGFKA-------G---RLGFLTSYTLDEIDRFLEDLR 94 (258)
T ss_dssp BCCSEEEEEECHHHHHHHHTTBC-----T-TCEEEEEES-------S---SCCSSCCBCGGGHHHHHHHHH
T ss_pred CCCCEEEEEeCcHHHHHHHHHhC-----C-CCCEEEEEC-------C---CCCccCcCCHHHHHHHHHHHH
Confidence 47899999999999887654321 3 688999972 2 44665544 23444555443
No 21
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=87.70 E-value=13 Score=32.34 Aligned_cols=128 Identities=6% Similarity=0.015 Sum_probs=70.8
Q ss_pred CCeeEEEEccCCCCchhhHHHHHHHHHHhhhcCCcEEEEEccccccccCCCeeeCChhhHhchhccCCcceeccCCCCch
Q 019697 143 DEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDT 222 (337)
Q Consensus 143 ~~~~iaIvt~GG~apGmNavIr~lv~~l~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~V~~~~~~GGS~LGTsR~~~d~ 222 (337)
+..+||++...-.-|-...++.++.+.+.+ ++ .++.- ..+.......
T Consensus 4 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~~-------------------------------~~~~~~~~~~ 50 (291)
T 3l49_A 4 EGKTIGITAIGTDHDWDLKAYQAQIAEIER-LG-GTAIA-------------------------------LDAGRNDQTQ 50 (291)
T ss_dssp TTCEEEEEESCCSSHHHHHHHHHHHHHHHH-TT-CEEEE-------------------------------EECTTCHHHH
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHHH-cC-CEEEE-------------------------------EcCCCCHHHH
Confidence 446899999876677777788888877764 22 22211 1111111234
Q ss_pred HHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeeccccCCccccCcccCchhHHHHHHHHHHHHHHh
Q 019697 223 NKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVE 302 (337)
Q Consensus 223 ~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTIDNDI~gtD~S~GfdTAv~~~~~~i~~i~~~ 302 (337)
.+.++.+...++|++++.+.+.... ....+.+.+.+ ++||.+=. +.+....++++|-. +....+.+.+...
T Consensus 51 ~~~~~~l~~~~vdgiIi~~~~~~~~--~~~~~~~~~~~--iPvV~~~~----~~~~~~~~V~~D~~-~~g~~~~~~l~~~ 121 (291)
T 3l49_A 51 VSQIQTLIAQKPDAIIEQLGNLDVL--NPWLQKINDAG--IPLFTVDT----ATPHAINNTTSNNY-SIGAELALQMVAD 121 (291)
T ss_dssp HHHHHHHHHHCCSEEEEESSCHHHH--HHHHHHHHHTT--CCEEEESC----CCTTCSEEEEECHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEeCCChhhh--HHHHHHHHHCC--CcEEEecC----CCCCcCceEecChH-HHHHHHHHHHHHH
Confidence 5678888899999999998874322 22334444545 55665533 33332335555532 2222333334333
Q ss_pred hhcCCCeEEEE
Q 019697 303 VESVENGVGIV 313 (337)
Q Consensus 303 A~S~~~rV~iV 313 (337)
...+ ++|.++
T Consensus 122 ~~g~-~~i~~i 131 (291)
T 3l49_A 122 LGGK-GNVLVF 131 (291)
T ss_dssp HTTC-EEEEEE
T ss_pred cCCC-ceEEEE
Confidence 3444 567777
No 22
>1u0t_A Inorganic polyphosphate/ATP-NAD kinase; alpha-beta, beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Mycobacterium tuberculosis} SCOP: e.52.1.1 PDB: 1u0r_A 1y3i_A* 1y3h_A
Probab=79.86 E-value=0.82 Score=42.84 Aligned_cols=35 Identities=31% Similarity=0.505 Sum_probs=24.9
Q ss_pred HhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeec
Q 019697 231 DRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPK 270 (337)
Q Consensus 231 ~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPk 270 (337)
..+.|.++++|||||+..|...... . .++++||+.
T Consensus 73 ~~~~d~vi~~GGDGT~l~a~~~~~~---~--~~pvlgi~~ 107 (307)
T 1u0t_A 73 ADGCELVLVLGGDGTFLRAAELARN---A--SIPVLGVNL 107 (307)
T ss_dssp ---CCCEEEEECHHHHHHHHHHHHH---H--TCCEEEEEC
T ss_pred ccCCCEEEEEeCCHHHHHHHHHhcc---C--CCCEEEEeC
Confidence 3578999999999998877655432 2 468999983
No 23
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Probab=79.24 E-value=2.9 Score=39.27 Aligned_cols=53 Identities=17% Similarity=0.177 Sum_probs=38.2
Q ss_pred hHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeeccccCCcc
Q 019697 222 TNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIA 277 (337)
Q Consensus 222 ~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTIDNDI~ 277 (337)
..++++.+...+.|.++++|||||+..+..-. .+.+..+++.+||.==-||+.
T Consensus 69 a~~~~~~~~~~~~d~vvv~GGDGTv~~v~~~l---~~~~~~~pl~iIP~GT~N~lA 121 (337)
T 2qv7_A 69 ATLEAERAMHENYDVLIAAGGDGTLNEVVNGI---AEKPNRPKLGVIPMGTVNDFG 121 (337)
T ss_dssp HHHHHHHHTTTTCSEEEEEECHHHHHHHHHHH---TTCSSCCEEEEEECSSCCHHH
T ss_pred HHHHHHHHhhcCCCEEEEEcCchHHHHHHHHH---HhCCCCCcEEEecCCcHhHHH
Confidence 34555555556789999999999988765432 223567899999986677764
No 24
>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A
Probab=78.69 E-value=6.4 Score=36.90 Aligned_cols=53 Identities=25% Similarity=0.286 Sum_probs=36.9
Q ss_pred hHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHc--CCceeEEEeeccccCCcc
Q 019697 222 TNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKR--GLQVAVAGIPKTIDNDIA 277 (337)
Q Consensus 222 ~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~--~~~i~VVgIPkTIDNDI~ 277 (337)
..++++.+...+.|.++++|||||+..+..-.. ++ +.++++..||.==-||+.
T Consensus 71 ~~~~~~~~~~~~~d~vvv~GGDGTl~~v~~~l~---~~~~~~~~plgiiP~Gt~N~fa 125 (332)
T 2bon_A 71 AARYVEEARKFGVATVIAGGGDGTINEVSTALI---QCEGDDIPALGILPLGTANDFA 125 (332)
T ss_dssp HHHHHHHHHHHTCSEEEEEESHHHHHHHHHHHH---HCCSSCCCEEEEEECSSSCHHH
T ss_pred HHHHHHHHHhcCCCEEEEEccchHHHHHHHHHh---hcccCCCCeEEEecCcCHHHHH
Confidence 344555555568999999999999887654332 22 456888999986666654
No 25
>3pfn_A NAD kinase; structural genomics consortium, SNP, SGC, transferase; 2.70A {Homo sapiens}
Probab=77.55 E-value=1.3 Score=43.28 Aligned_cols=56 Identities=27% Similarity=0.348 Sum_probs=39.8
Q ss_pred hCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeeccccCCccccCcccCchhHH--HHHHHHHHHHHHh
Q 019697 232 RGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAV--EEAQRAINAAHVE 302 (337)
Q Consensus 232 ~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTIDNDI~gtD~S~GfdTAv--~~~~~~i~~i~~~ 302 (337)
.++|.++++|||||+-.|..+.. +..++|+||=. -++||-|-+ +.+.++++.+...
T Consensus 107 ~~~DlvI~lGGDGT~L~aa~~~~-----~~~~PvlGiN~----------G~LGFLt~~~~~~~~~~l~~vl~g 164 (365)
T 3pfn_A 107 NQIDFIICLGGDGTLLYASSLFQ-----GSVPPVMAFHL----------GSLGFLTPFSFENFQSQVTQVIEG 164 (365)
T ss_dssp TTCSEEEEESSTTHHHHHHHHCS-----SSCCCEEEEES----------SSCTTTCCEESTTHHHHHHHHHHS
T ss_pred cCCCEEEEEcChHHHHHHHHHhc-----cCCCCEEEEcC----------CCCccceeecHHHHHHHHHHHHcC
Confidence 47899999999999887776542 35678999853 388887753 3455666665533
No 26
>3s4y_A Thiamin pyrophosphokinase 1; structural genomics, structural genomics consortium, transferase; HET: TPP; 1.80A {Homo sapiens} PDB: 1ig3_A* 2f17_A*
Probab=77.09 E-value=11 Score=34.48 Aligned_cols=101 Identities=19% Similarity=0.325 Sum_probs=59.6
Q ss_pred ccccccCCCCeeEEEEccCCCCchhhHHHHHHHHHHhhhcCCcEEEEEccccccccC---------------CCeeeCCh
Q 019697 135 REKVYFKSDEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYS---------------KNTLTLSP 199 (337)
Q Consensus 135 r~~~~f~~~~~~iaIvt~GG~apGmNavIr~lv~~l~~~~~~~~v~Gi~~G~~GL~~---------------~~~~~L~~ 199 (337)
|+....+....+-++|.++|+-+- .++ .+++.. .-++++-.|..=|++ +++--+++
T Consensus 11 ~~~~~~~~~~~~~~lIv~ng~~~~---~~~----~~~~~~--~~~i~aDgGa~~l~~~~~~~~~~~~Pd~ivGD~DSi~~ 81 (247)
T 3s4y_A 11 RENLYFQGGNLKYCLVILNQPLDN---YFR----HLWNKA--LLRACADGGANRLYDITEGERESFLPEFINGDFDSIRP 81 (247)
T ss_dssp ---------CCCEEEEECSSCCCT---THH----HHHHHC--SCEEEETTHHHHHHHHTTTCGGGCCCSEEEECCSSSCH
T ss_pred cccccccCCCCCEEEEEECCcchH---HHH----HHHhhC--CEEEEEchHHHHHHHhccccccCCCccEEEcCCcCCCH
Confidence 333433444556777777888772 333 333332 357888888655543 34444666
Q ss_pred hhHhchhccCCcceeccCCC--CchHHHHHHHHHh------CCCEEEEEcCCcc
Q 019697 200 KVVNDIHKRGGTILRTSRGG--HDTNKIVDNIEDR------GINQVYIIGGDGT 245 (337)
Q Consensus 200 ~~V~~~~~~GGS~LGTsR~~--~d~~~iv~~L~~~------~Id~LviIGGdgs 245 (337)
+..+.+...|-.++-. ..+ -|++++++.+.+. +.+-++++|+.|.
T Consensus 82 ~~~~~~~~~~~~i~~~-peKD~TD~ekAl~~~~~~~~~~~~~~~~I~ilGa~GG 134 (247)
T 3s4y_A 82 EVREYYATKGCELIST-PDQDHTDFTKCLKMLQKKIEEKDLKVDVIVTLGGLAG 134 (247)
T ss_dssp HHHHHHHHTTCEEEEC-CCTTSCHHHHHHHHHHHHHHHTTCCCSEEEEECCSSS
T ss_pred HHHHHHHhcCCEEEEC-CCCCcCHHHHHHHHHHHhhhhccCCCCEEEEEecCCC
Confidence 6666666666545532 222 3688888887665 7899999999997
No 27
>3afo_A NADH kinase POS5; alpha/beta+BETA sandwich, ATP-binding, mitochondrion NADP, nucleotide-binding, transferase, transit peptide; HET: NAI; 2.00A {Saccharomyces cerevisiae}
Probab=72.48 E-value=1.2 Score=43.72 Aligned_cols=54 Identities=20% Similarity=0.369 Sum_probs=36.6
Q ss_pred hCCCEEEEEcCCccHHHHHHHHHHHHHcCCce-eEEEeeccccCCccccCcccCchhHHH--HHHHHHHHHH
Q 019697 232 RGINQVYIIGGDGTQKGAALIYKEVEKRGLQV-AVAGIPKTIDNDIAVIDKSFGFDTAVE--EAQRAINAAH 300 (337)
Q Consensus 232 ~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i-~VVgIPkTIDNDI~gtD~S~GfdTAv~--~~~~~i~~i~ 300 (337)
.+.|.++++|||||+..|..... +..+ +|+||+. -++||-|.++ .+.++++.+.
T Consensus 113 ~~~DlVIvlGGDGTlL~aa~~~~-----~~~vpPiLGIN~----------G~lGFLt~~~~~~~~~al~~il 169 (388)
T 3afo_A 113 NRTDLLVTLGGDGTILHGVSMFG-----NTQVPPVLAFAL----------GTLGFLSPFDFKEHKKVFQEVI 169 (388)
T ss_dssp HHCSEEEEEESHHHHHHHHHTTT-----TSCCCCEEEEEC----------SSCCSSCCEEGGGHHHHHHHHH
T ss_pred cCCCEEEEEeCcHHHHHHHHHhc-----ccCCCeEEEEEC----------CCcccCCcCChHHHHHHHHHHh
Confidence 45899999999999988765432 2345 7999972 2677777643 3444555544
No 28
>1jq5_A Glycerol dehydrogenase; oxidoreductase, NAD, glycerol metabolism; HET: NAD; 1.70A {Geobacillus stearothermophilus} SCOP: e.22.1.2 PDB: 1jpu_A* 1jqa_A*
Probab=72.43 E-value=6.4 Score=37.43 Aligned_cols=51 Identities=18% Similarity=0.231 Sum_probs=41.6
Q ss_pred chHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeeccccCCc
Q 019697 221 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDI 276 (337)
Q Consensus 221 d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTIDNDI 276 (337)
..+++++.+++++.|.++-|||--.+..|..++-. ++ +++|.||-|-..|-
T Consensus 74 ~v~~~~~~~~~~~~d~IIavGGGsv~D~aK~iA~~---~~--~p~i~IPTTa~tgS 124 (370)
T 1jq5_A 74 EVERIANIARKAEAAIVIGVGGGKTLDTAKAVADE---LD--AYIVIVPTAASTDA 124 (370)
T ss_dssp HHHHHHHHHHHTTCSEEEEEESHHHHHHHHHHHHH---HT--CEEEEEESSCCSSC
T ss_pred HHHHHHHHHHhcCCCEEEEeCChHHHHHHHHHHHh---cC--CCEEEeccccCCCc
Confidence 46788899999999999999998888888888732 23 78999999954444
No 29
>3l8m_A Probable thiamine pyrophosphokinase; thiamin diphosphate biosynthetic process, ATP binding, structural genomics, PSI-2; 2.40A {Staphylococcus saprophyticus}
Probab=71.52 E-value=8.2 Score=34.41 Aligned_cols=69 Identities=19% Similarity=0.205 Sum_probs=51.4
Q ss_pred CcEEEEEccccccccC---------CCeeeCChhhHhchhccCCcceeccCC--CCchHHHHHHHHHhCCCEEEEEcCCc
Q 019697 176 VDEILGIEGGYRGFYS---------KNTLTLSPKVVNDIHKRGGTILRTSRG--GHDTNKIVDNIEDRGINQVYIIGGDG 244 (337)
Q Consensus 176 ~~~v~Gi~~G~~GL~~---------~~~~~L~~~~V~~~~~~GGS~LGTsR~--~~d~~~iv~~L~~~~Id~LviIGGdg 244 (337)
...++|+-.|..=|++ +++-.++++....+...| .++-.... .-|++++++.+.+++.+-++++|+.|
T Consensus 22 ~~~~i~~DgGa~~l~~~g~~Pd~ivGD~DSi~~~~~~~~~~~~-~i~~~p~eKD~TD~e~Al~~a~~~~~~~I~i~Ga~G 100 (212)
T 3l8m_A 22 HEHWIGIDRGTLILLESGITPQFAVGDFDSISDSERNFIQQQI-EINPYNSEKDDTDLALGIDQAVKRGYRNIDVYGATG 100 (212)
T ss_dssp TSEEEEETHHHHHHHHTTCCCSEEESCCCCSCHHHHHHHHHHT-BCCCCC---CBCHHHHHHHHHHHTTCCEEEEESCSS
T ss_pred CCEEEEECHHHHHHHHCCCCccEEEeCcccCCHHHHHHHhcCC-cEEEECCcCCCCHHHHHHHHHHHCCCCEEEEEcCCC
Confidence 3578888888876654 455567777777777776 65544433 34789999999999999999999999
Q ss_pred c
Q 019697 245 T 245 (337)
Q Consensus 245 s 245 (337)
.
T Consensus 101 g 101 (212)
T 3l8m_A 101 G 101 (212)
T ss_dssp S
T ss_pred C
Confidence 7
No 30
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=70.71 E-value=52 Score=28.44 Aligned_cols=129 Identities=17% Similarity=0.099 Sum_probs=69.2
Q ss_pred eeEEEEccCCCCchhhHHHHHHHHHHhhhcCCcEEEEEccccccccCCCeeeCChhhHhchhccCCcceeccCCCCchHH
Q 019697 145 VRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTNK 224 (337)
Q Consensus 145 ~~iaIvt~GG~apGmNavIr~lv~~l~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~V~~~~~~GGS~LGTsR~~~d~~~ 224 (337)
.+||++...-.-|-...++.++-+.+.+ ++ .++.-+ -+....+...+
T Consensus 16 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~~~-------------------------------~~~~~~~~~~~ 62 (298)
T 3tb6_A 16 KTIGVLTTYISDYIFPSIIRGIESYLSE-QG-YSMLLT-------------------------------STNNNPDNERR 62 (298)
T ss_dssp CEEEEEESCSSSTTHHHHHHHHHHHHHH-TT-CEEEEE-------------------------------ECTTCHHHHHH
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHHH-CC-CEEEEE-------------------------------eCCCChHHHHH
Confidence 5899999887778888888888887764 22 233211 01111122456
Q ss_pred HHHHHHHhCCCEEEEEcCCccHH-HHHHHHHHHHHcCCceeEEEeeccccCCccccC-cccCchhHHHHHHHHHHHHHHh
Q 019697 225 IVDNIEDRGINQVYIIGGDGTQK-GAALIYKEVEKRGLQVAVAGIPKTIDNDIAVID-KSFGFDTAVEEAQRAINAAHVE 302 (337)
Q Consensus 225 iv~~L~~~~Id~LviIGGdgs~~-~a~~L~e~~~~~~~~i~VVgIPkTIDNDI~gtD-~S~GfdTAv~~~~~~i~~i~~~ 302 (337)
.++.+...++|++++.+.+.+.. ....+.+.+.+.+ ++||.+ |.+.+..+ .++++|-. +....+.+.+..
T Consensus 63 ~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~~~~~~--iPvV~~----~~~~~~~~~~~V~~d~~-~~~~~a~~~L~~- 134 (298)
T 3tb6_A 63 GLENLLSQHIDGLIVEPTKSALQTPNIGYYLNLEKNG--IPFAMI----NASYAELAAPSFTLDDV-KGGMMAAEHLLS- 134 (298)
T ss_dssp HHHHHHHTCCSEEEECCSSTTSCCTTHHHHHHHHHTT--CCEEEE----SSCCTTCSSCEEEECHH-HHHHHHHHHHHH-
T ss_pred HHHHHHHCCCCEEEEecccccccCCcHHHHHHHHhcC--CCEEEE----ecCcCCCCCCEEEeCcH-HHHHHHHHHHHH-
Confidence 77888889999999998775321 1122334444445 556644 44443221 24444421 222223333322
Q ss_pred hhcCCCeEEEEEec
Q 019697 303 VESVENGVGIVKLM 316 (337)
Q Consensus 303 A~S~~~rV~iVEvM 316 (337)
.++ ++|.++--.
T Consensus 135 -~G~-~~i~~i~~~ 146 (298)
T 3tb6_A 135 -LGH-THMMGIFKA 146 (298)
T ss_dssp -TTC-CSEEEEEES
T ss_pred -CCC-CcEEEEcCC
Confidence 244 467777543
No 31
>3s40_A Diacylglycerol kinase; structural genomics, the center for structural genomics of infectious diseases, csgid, transfer; 2.10A {Bacillus anthracis} PDB: 3t5p_A
Probab=69.20 E-value=3.7 Score=38.04 Aligned_cols=54 Identities=22% Similarity=0.342 Sum_probs=38.0
Q ss_pred CchHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeeccccCCcc
Q 019697 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIA 277 (337)
Q Consensus 220 ~d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTIDNDI~ 277 (337)
.+..++++.+.+ +.|.++++|||||+..+.. .+..++.++++..||.==-||+.
T Consensus 51 ~~a~~~~~~~~~-~~d~vv~~GGDGTl~~v~~---~l~~~~~~~~l~iiP~Gt~N~~a 104 (304)
T 3s40_A 51 GDATKYCQEFAS-KVDLIIVFGGDGTVFECTN---GLAPLEIRPTLAIIPGGTCNDFS 104 (304)
T ss_dssp THHHHHHHHHTT-TCSEEEEEECHHHHHHHHH---HHTTCSSCCEEEEEECSSCCHHH
T ss_pred chHHHHHHHhhc-CCCEEEEEccchHHHHHHH---HHhhCCCCCcEEEecCCcHHHHH
Confidence 345566666654 8899999999999886543 22222356889999987777774
No 32
>3uhj_A Probable glycerol dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.34A {Sinorhizobium meliloti}
Probab=68.84 E-value=7.3 Score=37.79 Aligned_cols=52 Identities=13% Similarity=0.230 Sum_probs=42.9
Q ss_pred CchHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeeccccCCc
Q 019697 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDI 276 (337)
Q Consensus 220 ~d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTIDNDI 276 (337)
+..+++++.+++.+.|.++-|||--++..|..++-. ..+++|.||-|-..|-
T Consensus 93 ~~v~~~~~~~~~~~~d~IIavGGGs~~D~AK~iA~~-----~~~p~i~IPTTagtgS 144 (387)
T 3uhj_A 93 SEIERVRKVAIEHGSDILVGVGGGKTADTAKIVAID-----TGARIVIAPTIASTDA 144 (387)
T ss_dssp HHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHH-----TTCEEEECCSSCCCST
T ss_pred HHHHHHHHHHhhcCCCEEEEeCCcHHHHHHHHHHHh-----cCCCEEEecCcccCCc
Confidence 457889999999999999999998889888888743 2478999999865554
No 33
>1oj7_A Hypothetical oxidoreductase YQHD; structural genomics; HET: NZQ; 2.0A {Escherichia coli} SCOP: e.22.1.2
Probab=67.63 E-value=5.8 Score=38.41 Aligned_cols=55 Identities=9% Similarity=0.169 Sum_probs=42.8
Q ss_pred chHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcC----------------CceeEEEeeccccCC
Q 019697 221 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRG----------------LQVAVAGIPKTIDND 275 (337)
Q Consensus 221 d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~----------------~~i~VVgIPkTIDND 275 (337)
..+++++.+++.+.|.++-|||--.+..|..++-.....+ -.+++|.||-|--.|
T Consensus 94 ~v~~~~~~~~~~~~D~IIavGGGsviD~AK~iA~~~~~~~~~~~~d~~~~~~~~~~~~~p~i~IPTTagtg 164 (408)
T 1oj7_A 94 TLMNAVKLVREQKVTFLLAVGGGSVLDGTKFIAAAANYPENIDPWHILQTGGKEIKSAIPMGCVLTLPATG 164 (408)
T ss_dssp HHHHHHHHHHHHTCCEEEEEESHHHHHHHHHHHHHTTSCTTSCTTHHHHTTTTTCCCCCCEEEEESSCSSC
T ss_pred HHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHhCCCCCCHHHHhccccCcCCCCCCEEEEeCCCchh
Confidence 4678899999999999999999888888888776432101 347899999996444
No 34
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=65.86 E-value=39 Score=29.88 Aligned_cols=127 Identities=16% Similarity=0.142 Sum_probs=70.2
Q ss_pred CeeEEEEccCCCCchhhHHHHHHHHHHhhhcCCcEEEEEccccccccCCCeeeCChhhHhchhccCCcceeccCCCCchH
Q 019697 144 EVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTN 223 (337)
Q Consensus 144 ~~~iaIvt~GG~apGmNavIr~lv~~l~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~V~~~~~~GGS~LGTsR~~~d~~ 223 (337)
+.+||++...-.-|-...++.++.+.+.+ ++ .++.- ..+........
T Consensus 2 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~~-------------------------------~~~~~~~~~~~ 48 (313)
T 3m9w_A 2 EVKIGMAIDDLRLERWQKDRDIFVKKAES-LG-AKVFV-------------------------------QSANGNEETQM 48 (313)
T ss_dssp -CEEEEEESCCSSSTTHHHHHHHHHHHHH-TS-CEEEE-------------------------------EECTTCHHHHH
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHHH-cC-CEEEE-------------------------------ECCCCCHHHHH
Confidence 45899999877778888899998888764 22 22221 11111112345
Q ss_pred HHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeeccccCCcccc--CcccCchhHHHHHHHHHHHHHH
Q 019697 224 KIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVI--DKSFGFDTAVEEAQRAINAAHV 301 (337)
Q Consensus 224 ~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTIDNDI~gt--D~S~GfdTAv~~~~~~i~~i~~ 301 (337)
+.++.+...++|++++.+-+.... ....+.+.+.+ |+||.+ |++++.. +.++++|-. +....+.+.+..
T Consensus 49 ~~i~~l~~~~vdgiIi~~~~~~~~--~~~~~~~~~~~--iPvV~~----~~~~~~~~~~~~V~~D~~-~~g~~a~~~L~~ 119 (313)
T 3m9w_A 49 SQIENMINRGVDVLVIIPYNGQVL--SNVVKEAKQEG--IKVLAY----DRMINDADIDFYISFDNE-KVGELQAKALVD 119 (313)
T ss_dssp HHHHHHHHTTCSEEEEECSSTTSC--HHHHHHHHTTT--CEEEEE----SSCCTTSCCSEEEEECHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEEeCCChhhh--HHHHHHHHHCC--CeEEEE----CCcCCCCCceEEEecCHH-HHHHHHHHHHHH
Confidence 678888889999999999876531 11223333334 667754 4444432 346666632 222223333321
Q ss_pred hhhcCCCeEEEEE
Q 019697 302 EVESVENGVGIVK 314 (337)
Q Consensus 302 ~A~S~~~rV~iVE 314 (337)
...+ ++|.++-
T Consensus 120 -~~G~-~~i~~i~ 130 (313)
T 3m9w_A 120 -IVPQ-GNYFLMG 130 (313)
T ss_dssp -HCSS-EEEEEEE
T ss_pred -hCCC-CcEEEEE
Confidence 1344 4677764
No 35
>3ox4_A Alcohol dehydrogenase 2; iron, NAD, oxidoreductase; HET: NAD; 2.00A {Zymomonas mobilis} PDB: 3owo_A*
Probab=65.58 E-value=9.7 Score=36.63 Aligned_cols=57 Identities=14% Similarity=0.112 Sum_probs=44.6
Q ss_pred CchHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHc-------------CCceeEEEeeccccCCc
Q 019697 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKR-------------GLQVAVAGIPKTIDNDI 276 (337)
Q Consensus 220 ~d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~-------------~~~i~VVgIPkTIDNDI 276 (337)
+..+++++.+++.+.|.++-|||--.+..|..++-..... .-.+++|.||-|-..|-
T Consensus 75 ~~v~~~~~~~~~~~~D~IIavGGGsv~D~aK~ia~~~~~~~~~~d~~~~~~~~~~~~p~i~IPTTagtgS 144 (383)
T 3ox4_A 75 TAVLEGLKILKDNNSDFVISLGGGSPHDCAKAIALVATNGGEVKDYEGIDKSKKPALPLMSINTTAGTAS 144 (383)
T ss_dssp HHHHHHHHHHHHHTCSEEEEEESHHHHHHHHHHHHHHHSCSSGGGGCEESCCSSCCSCEEEEECSSSCCT
T ss_pred HHHHHHHHHHHhcCcCEEEEeCCcHHHHHHHHHHHHHhCCCCHHHHhcccccccCCCCEEEEeCCCCchh
Confidence 3578999999999999999999988888888887654211 11478999999986544
No 36
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=65.47 E-value=75 Score=28.60 Aligned_cols=29 Identities=3% Similarity=-0.151 Sum_probs=22.7
Q ss_pred CeeEEEEccCCCC-chhhHHHHHHHHHHhh
Q 019697 144 EVRACIVTCGGLC-PGINTVIREIVCGLSY 172 (337)
Q Consensus 144 ~~~iaIvt~GG~a-pGmNavIr~lv~~l~~ 172 (337)
..+||++..+-.. |=...++.++.+.+.+
T Consensus 3 ~~~Ig~i~p~~~~~~f~~~~~~g~~~~a~~ 32 (350)
T 3h75_A 3 LTSVVFLNPGNSTETFWVSYSQFMQAAARD 32 (350)
T ss_dssp CCEEEEEECSCTTCHHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCChHHHHHHHHHHHHHHH
Confidence 4589999987666 7778888888887764
No 37
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=65.22 E-value=45 Score=29.30 Aligned_cols=89 Identities=8% Similarity=0.007 Sum_probs=53.6
Q ss_pred CeeEEEEccCCCCchhhHHHHHHHHHHhhhcCCcEEEEEccccccccCCCeeeCChhhHhchhccCCcceecc--CCCCc
Q 019697 144 EVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTS--RGGHD 221 (337)
Q Consensus 144 ~~~iaIvt~GG~apGmNavIr~lv~~l~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~V~~~~~~GGS~LGTs--R~~~d 221 (337)
+.+||++...-.-|-...+++++.+.+.+ ++ .++.- ..+. .....
T Consensus 3 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~~-------------------------------~~~~~~~~~~~ 49 (297)
T 3rot_A 3 RDKYYLITHGSQDPYWTSLFQGAKKAAEE-LK-VDLQI-------------------------------LAPPGANDVPK 49 (297)
T ss_dssp CCEEEEECSCCCSHHHHHHHHHHHHHHHH-HT-CEEEE-------------------------------ECCSSSCCHHH
T ss_pred eEEEEEEecCCCCchHHHHHHHHHHHHHH-hC-cEEEE-------------------------------ECCCCcCCHHH
Confidence 46899999877778888888888887764 22 22210 0011 11123
Q ss_pred hHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEee
Q 019697 222 TNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIP 269 (337)
Q Consensus 222 ~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIP 269 (337)
..+.++.+...++|++++.+-+.... ....+.+.+.+ |+||.+=
T Consensus 50 ~~~~i~~l~~~~vdgiii~~~~~~~~--~~~~~~~~~~g--iPvV~~~ 93 (297)
T 3rot_A 50 QVQFIESALATYPSGIATTIPSDTAF--SKSLQRANKLN--IPVIAVD 93 (297)
T ss_dssp HHHHHHHHHHTCCSEEEECCCCSSTT--HHHHHHHHHHT--CCEEEES
T ss_pred HHHHHHHHHHcCCCEEEEeCCCHHHH--HHHHHHHHHCC--CCEEEEc
Confidence 45677888889999999988765521 11223333445 5566543
No 38
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=64.77 E-value=66 Score=27.41 Aligned_cols=125 Identities=10% Similarity=0.155 Sum_probs=66.5
Q ss_pred eeEEEEccCCCCchhhHHHHHHHHHHhhhcCCcEEEEEccccccccCCCeeeCChhhHhchhccCCcceeccCCCCchHH
Q 019697 145 VRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTNK 224 (337)
Q Consensus 145 ~~iaIvt~GG~apGmNavIr~lv~~l~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~V~~~~~~GGS~LGTsR~~~d~~~ 224 (337)
.+||++...-.-|-...++.++.+.+.+ ++ .++.-+ -+....+...+
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~~~-------------------------------~~~~~~~~~~~ 49 (272)
T 3o74_A 3 RTLGFILPDLENPSYARIAKQLEQGARA-RG-YQLLIA-------------------------------SSDDQPDSERQ 49 (272)
T ss_dssp CEEEEEESCTTCHHHHHHHHHHHHHHHH-TT-CEEEEE-------------------------------ECTTCHHHHHH
T ss_pred eEEEEEeCCCcChhHHHHHHHHHHHHHH-CC-CEEEEE-------------------------------eCCCCHHHHHH
Confidence 4799998877777778888888777754 22 233211 01111123456
Q ss_pred HHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeeccccCCccccC-cccCchhHHHHHHHHHHHHHHhh
Q 019697 225 IVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVID-KSFGFDTAVEEAQRAINAAHVEV 303 (337)
Q Consensus 225 iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTIDNDI~gtD-~S~GfdTAv~~~~~~i~~i~~~A 303 (337)
.++.+...++|++++.+.+.... ...+.+.+.+ +++|. +|++++..+ .++++|-. .....+.+.+..
T Consensus 50 ~~~~l~~~~vdgiIi~~~~~~~~---~~~~~~~~~~--iPvV~----~~~~~~~~~~~~V~~d~~-~~~~~a~~~L~~-- 117 (272)
T 3o74_A 50 LQQLFRARRCDALFVASCLPPED---DSYRELQDKG--LPVIA----IDRRLDPAHFCSVISDDR-DASRQLAASLLS-- 117 (272)
T ss_dssp HHHHHHHTTCSEEEECCCCCSSC---CHHHHHHHTT--CCEEE----ESSCCCTTTCEEEEECHH-HHHHHHHHHHHT--
T ss_pred HHHHHHHcCCCEEEEecCccccH---HHHHHHHHcC--CCEEE----EccCCCccccCEEEEchH-HHHHHHHHHHHH--
Confidence 77888889999999988773321 1223344445 45664 445443321 24444421 112223333322
Q ss_pred hcCCCeEEEEEe
Q 019697 304 ESVENGVGIVKL 315 (337)
Q Consensus 304 ~S~~~rV~iVEv 315 (337)
..+ ++|.++--
T Consensus 118 ~G~-~~i~~i~~ 128 (272)
T 3o74_A 118 SAP-RSIALIGA 128 (272)
T ss_dssp TCC-SEEEEEEE
T ss_pred CCC-cEEEEEec
Confidence 243 56777753
No 39
>1rrm_A Lactaldehyde reductase; structural genomics, dehydrogenase, PSI, protein structure initiative; HET: APR; 1.60A {Escherichia coli} SCOP: e.22.1.2 PDB: 2bi4_A* 2bl4_A*
Probab=64.24 E-value=9.1 Score=36.56 Aligned_cols=57 Identities=18% Similarity=0.208 Sum_probs=44.6
Q ss_pred CchHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcC---------------CceeEEEeeccccCCc
Q 019697 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRG---------------LQVAVAGIPKTIDNDI 276 (337)
Q Consensus 220 ~d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~---------------~~i~VVgIPkTIDNDI 276 (337)
+..+++++.+++.++|.++-|||--.+..|..++-.....+ -.+++|.||-|--.|-
T Consensus 75 ~~v~~~~~~~~~~~~d~IIavGGGsv~D~aK~iA~~~~~~~~~~~~d~~~~~~~~~~~~p~i~IPTT~gtgS 146 (386)
T 1rrm_A 75 TVVKEGLGVFQNSGADYLIAIGGGSPQDTCKAIGIISNNPEFADVRSLEGLSPTNKPSVPILAIPTTAGTAA 146 (386)
T ss_dssp HHHHHHHHHHHHHTCSEEEEEESHHHHHHHHHHHHHHHCGGGTTSGGGSEECCCCSCCSCEEEEECSSSCCT
T ss_pred HHHHHHHHHHHhcCcCEEEEeCChHHHHHHHHHHHHHhCCCCCCHHHHhcccccCCCCCCEEEEeCCCCchh
Confidence 35789999999999999999999888888888876542111 1478999999986554
No 40
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=64.21 E-value=71 Score=27.60 Aligned_cols=86 Identities=16% Similarity=0.113 Sum_probs=53.4
Q ss_pred CCeeEEEEccC-----CCCchhhHHHHHHHHHHhhhcCCcEEEEEccccccccCCCeeeCChhhHhchhccCCcceeccC
Q 019697 143 DEVRACIVTCG-----GLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSR 217 (337)
Q Consensus 143 ~~~~iaIvt~G-----G~apGmNavIr~lv~~l~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~V~~~~~~GGS~LGTsR 217 (337)
+..+||++... -.-|-...++.++.+.+.+ ++ .++.- ....
T Consensus 7 ~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~~--------------------------------~~~~ 52 (292)
T 3k4h_A 7 TTKTLGLVMPSSASKAFQNPFFPEVIRGISSFAHV-EG-YALYM--------------------------------STGE 52 (292)
T ss_dssp CCCEEEEECSSCHHHHTTSTHHHHHHHHHHHHHHH-TT-CEEEE--------------------------------CCCC
T ss_pred CCCEEEEEecCCccccccCHHHHHHHHHHHHHHHH-cC-CEEEE--------------------------------EeCC
Confidence 34589999987 6677888888888887764 22 22220 0011
Q ss_pred C-CCchHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEe
Q 019697 218 G-GHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI 268 (337)
Q Consensus 218 ~-~~d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgI 268 (337)
. .+...++++.+...++|++++.+.+..-. ..+.+.+.+ +++|.+
T Consensus 53 ~~~~~~~~~~~~~~~~~vdgiIi~~~~~~~~----~~~~l~~~~--iPvV~~ 98 (292)
T 3k4h_A 53 TEEEIFNGVVKMVQGRQIGGIILLYSRENDR----IIQYLHEQN--FPFVLI 98 (292)
T ss_dssp SHHHHHHHHHHHHHTTCCCEEEESCCBTTCH----HHHHHHHTT--CCEEEE
T ss_pred CCHHHHHHHHHHHHcCCCCEEEEeCCCCChH----HHHHHHHCC--CCEEEE
Confidence 1 11235678888889999999988775532 233444445 556644
No 41
>3lm8_A Thiamine pyrophosphokinase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: VIB; 2.60A {Bacillus subtilis}
Probab=64.09 E-value=30 Score=30.96 Aligned_cols=69 Identities=13% Similarity=0.149 Sum_probs=49.8
Q ss_pred cEEEEEccccccccC---------CCeeeCChhhHhchhccCCcceeccCC--CCchHHHHHHHHHhCCCEEEEEcCCcc
Q 019697 177 DEILGIEGGYRGFYS---------KNTLTLSPKVVNDIHKRGGTILRTSRG--GHDTNKIVDNIEDRGINQVYIIGGDGT 245 (337)
Q Consensus 177 ~~v~Gi~~G~~GL~~---------~~~~~L~~~~V~~~~~~GGS~LGTsR~--~~d~~~iv~~L~~~~Id~LviIGGdgs 245 (337)
..++|+-.|..=|++ +++-.++++..+.+...|-.++-.... .-|++++++.+.+++.+-++++|+.|.
T Consensus 26 ~~~i~~DgGa~~l~~~g~~Pd~ivGDfDSi~~~~~~~~~~~~~~i~~~p~eKD~TD~e~Al~~a~~~g~~~I~i~Ga~Gg 105 (222)
T 3lm8_A 26 TLWIGVDKGTVTLLDAGIIPVEAFGDFDSITEQERRRIEKAAPALHVYQAEKDQTDLDLALDWALEKQPDIIQIFGITGG 105 (222)
T ss_dssp EEEEEETHHHHHHHHHTCCCSEEESCSTTSCHHHHHHHHHHCTTCEEECCCSSSCHHHHHHHHHHHHCCSEEEEESCCCS
T ss_pred CEEEEECHHHHHHHHcCCCCcEEEeCcccCCHHHHHHHHhcCCeEEEeCCCCCCCHHHHHHHHHHHcCCCEEEEEcCCCC
Confidence 467778887766643 444456666666666665445544443 347899999999999999999999997
No 42
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus}
Probab=63.60 E-value=23 Score=32.49 Aligned_cols=107 Identities=13% Similarity=0.094 Sum_probs=64.4
Q ss_pred chhhHHHHHHHHHHhhhcCCcEEEEEccccccccCCCe-eeCChhhHhchhccCCcceeccC---CCCchHHHHHHHHHh
Q 019697 157 PGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNT-LTLSPKVVNDIHKRGGTILRTSR---GGHDTNKIVDNIEDR 232 (337)
Q Consensus 157 pGmNavIr~lv~~l~~~~~~~~v~Gi~~G~~GL~~~~~-~~L~~~~V~~~~~~GGS~LGTsR---~~~d~~~iv~~L~~~ 232 (337)
|--+...+.+++++.+.++..+|.-+..- ..+ .+.-....+.+...|+.+..... +..|+...++.+++.
T Consensus 124 ~~~~~~~~~~~~~l~~~~g~~~iaii~~~------~~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~~~d~~~~~~~l~~~ 197 (392)
T 3lkb_A 124 TSYSEQVVALLEYIAREKKGAKVALVVHP------SPFGRAPVEDARKAARELGLQIVDVQEVGSGNLDNTALLKRFEQA 197 (392)
T ss_dssp CCHHHHHHHHHHHHHHHCTTCEEEEEECS------SHHHHTTHHHHHHHHHHHTCEEEEEEECCTTCCCCHHHHHHHHHT
T ss_pred CChHHHHHHHHHHHHHhCCCCEEEEEEeC------CchhhhHHHHHHHHHHHcCCeEEEEEeeCCCCcCHHHHHHHHHhc
Confidence 33455566677777654455555544321 111 11111223334556777665433 245788889999999
Q ss_pred CCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeeccc
Q 019697 233 GINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTI 272 (337)
Q Consensus 233 ~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTI 272 (337)
+.|++|+.+.+ ..+..+.+.+++.|+++++++...+.
T Consensus 198 ~~dav~~~~~~---~~a~~~~~~~~~~g~~~~~~~~~~~~ 234 (392)
T 3lkb_A 198 GVEYVVHQNVA---GPVANILKDAKRLGLKMRHLGAHYTG 234 (392)
T ss_dssp TCCEEEEESCH---HHHHHHHHHHHHTTCCCEEEECGGGC
T ss_pred CCCEEEEecCc---chHHHHHHHHHHcCCCceEEEecCcc
Confidence 99999887643 33455667777889999998875443
No 43
>3k94_A Thiamin pyrophosphokinase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.10A {Geobacillus thermodenitrificans}
Probab=63.60 E-value=24 Score=31.70 Aligned_cols=69 Identities=12% Similarity=0.098 Sum_probs=49.4
Q ss_pred cEEEEEccccccccC---------CCeeeCChhhHhchhccCCcceeccCC--CCchHHHHHHHHHhCCCEEEEEcCCcc
Q 019697 177 DEILGIEGGYRGFYS---------KNTLTLSPKVVNDIHKRGGTILRTSRG--GHDTNKIVDNIEDRGINQVYIIGGDGT 245 (337)
Q Consensus 177 ~~v~Gi~~G~~GL~~---------~~~~~L~~~~V~~~~~~GGS~LGTsR~--~~d~~~iv~~L~~~~Id~LviIGGdgs 245 (337)
..++|+-.|..=|++ +++-.++++..+.+...|-.++-.... .-|++++++.+.+++.+-++++|+.|.
T Consensus 25 ~~~i~~Dgga~~l~~~g~~Pd~ivGD~DSi~~~~~~~~~~~~~~i~~~p~eKD~TD~e~Al~~a~~~g~~~I~i~Ga~GG 104 (223)
T 3k94_A 25 VCWVGVDRGTMTLLEAGFRPVRAFGDFDSLPAEDVVKLQQAFPDLDVWPAEKDKTDMEIALDWAVEQTARCIRLFGATGG 104 (223)
T ss_dssp EEEEEETTHHHHHHHHTCCCSEEESCGGGSCHHHHHHHHHHCTTCCEECCBTTBCHHHHHHHHHHTTCCSEEEEESCSSS
T ss_pred CEEEEECHHHHHHHHcCCCCCEEEeCcccCCHHHHHHHHhcCCeEEECCCcCCCCHHHHHHHHHHHcCCCEEEEEcCCCC
Confidence 467888888776643 344456666666666665445544333 347999999999999999999999997
No 44
>3iv7_A Alcohol dehydrogenase IV; NP_602249.1, iron-containing alcohol dehydrogenase, structur genomics, joint center for structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}
Probab=62.09 E-value=8 Score=37.20 Aligned_cols=51 Identities=20% Similarity=0.227 Sum_probs=42.3
Q ss_pred CchHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeeccccCCc
Q 019697 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDI 276 (337)
Q Consensus 220 ~d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTIDNDI 276 (337)
+..+++++.+++.+.|.++-|||--++..|..++-. ++ +++|.||-|- .+-
T Consensus 75 ~~v~~~~~~~~~~~~D~IIavGGGs~iD~aK~iA~~---~~--~P~i~IPTTa-tgS 125 (364)
T 3iv7_A 75 EVAERARAVATDNEIDLLVCVGGGSTIGLAKAIAMT---TA--LPIVAIPTTY-AGS 125 (364)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEESHHHHHHHHHHHHH---HC--CCEEEEECSS-SCG
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHhc---cC--CCEEEEcCCc-ccc
Confidence 357888999999999999999999889988888753 23 6799999998 554
No 45
>1o2d_A Alcohol dehydrogenase, iron-containing; TM0920, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE NAP TRS; 1.30A {Thermotoga maritima} SCOP: e.22.1.2 PDB: 1vhd_A*
Probab=60.95 E-value=6.6 Score=37.55 Aligned_cols=52 Identities=19% Similarity=0.215 Sum_probs=41.3
Q ss_pred CchHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHH-------------cCCceeEEEeecc
Q 019697 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEK-------------RGLQVAVAGIPKT 271 (337)
Q Consensus 220 ~d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~-------------~~~~i~VVgIPkT 271 (337)
+..+++++.+++.+.|.++-|||--.+..|..++-.... ..-.+++|.||-|
T Consensus 85 ~~v~~~~~~~~~~~~d~IIavGGGsv~D~AK~iA~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTT 149 (371)
T 1o2d_A 85 DNVMKAVERYRNDSFDFVVGLGGGSPMDFAKAVAVLLKEKDLSVEDLYDREKVKHWLPVVEIPTT 149 (371)
T ss_dssp HHHHHHHHHHTTSCCSEEEEEESHHHHHHHHHHHHHTTSTTCCSGGGGCGGGCCCCCCEEEEECS
T ss_pred HHHHHHHHHHHhcCCCEEEEeCChHHHHHHHHHHHHHhCCCCCHHHHhcccCCCCCCeEEEEeCC
Confidence 357788899999999999999999889988888765331 0035789999999
No 46
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=60.90 E-value=79 Score=28.31 Aligned_cols=124 Identities=7% Similarity=0.021 Sum_probs=66.9
Q ss_pred CeeEEEEccC--CCCchhhHHHHHHHHHHhhhcCCcEEEEEccccccccCCCeeeCChhhHhchhccCCcceeccCC-CC
Q 019697 144 EVRACIVTCG--GLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRG-GH 220 (337)
Q Consensus 144 ~~~iaIvt~G--G~apGmNavIr~lv~~l~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~V~~~~~~GGS~LGTsR~-~~ 220 (337)
..+||++... -.-|=...++.++.+.+.+ ++ .++.- ..+.. .+
T Consensus 61 ~~~Igvi~~~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~~--------------------------------~~~~~~~~ 106 (338)
T 3dbi_A 61 TQTLGLVVTNTLYHGIYFSELLFHAARMAEE-KG-RQLLL--------------------------------ADGKHSAE 106 (338)
T ss_dssp CSEEEEEECTTTTSTTHHHHHHHHHHHHHHH-TT-CEEEE--------------------------------EECTTSHH
T ss_pred CCEEEEEecCCcccChhHHHHHHHHHHHHHH-CC-CEEEE--------------------------------EeCCCChH
Confidence 4589999876 5667777788888777754 22 22221 11111 11
Q ss_pred chHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeeccccCCcccc-CcccCchhHHHHHHHHHHHH
Q 019697 221 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVI-DKSFGFDTAVEEAQRAINAA 299 (337)
Q Consensus 221 d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTIDNDI~gt-D~S~GfdTAv~~~~~~i~~i 299 (337)
...+.++.|...++|++++.+.+.+... +.+.+++.+ +++|.+ |.+++.. ..+++.|-. .....+.+.+
T Consensus 107 ~~~~~~~~l~~~~vdgiIi~~~~~~~~~---~~~~~~~~~--iPvV~~----~~~~~~~~~~~V~~D~~-~~~~~a~~~L 176 (338)
T 3dbi_A 107 EERQAIQYLLDLRCDAIMIYPRFLSVDE---IDDIIDAHS--QPIMVL----NRRLRKNSSHSVWCDHK-QTSFNAVAEL 176 (338)
T ss_dssp HHHHHHHHHHHTTCSEEEECCSSSCHHH---HHHHHHHCS--SCEEEE----SSCCSSSGGGEECBCHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCEEEEeCCCCChHH---HHHHHHcCC--CCEEEE----cCCCCCCCCCEEEEChH-HHHHHHHHHH
Confidence 2345778888899999999987766432 333344434 556643 4444332 134555421 1222233333
Q ss_pred HHhhhcCCCeEEEEE
Q 019697 300 HVEVESVENGVGIVK 314 (337)
Q Consensus 300 ~~~A~S~~~rV~iVE 314 (337)
.. .++ ++|.++-
T Consensus 177 ~~--~G~-~~I~~i~ 188 (338)
T 3dbi_A 177 IN--AGH-QEIAFLT 188 (338)
T ss_dssp HH--TTC-CSEEEEC
T ss_pred HH--CCC-CEEEEEe
Confidence 22 244 5677763
No 47
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=60.50 E-value=67 Score=28.93 Aligned_cols=86 Identities=13% Similarity=-0.018 Sum_probs=50.5
Q ss_pred CeeEEEEccCCCCchhhHHHHHHHHHHhhhcCCcEEEEEccccccccCCCeeeCChhhHhchhccCCcceeccCCCCchH
Q 019697 144 EVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTN 223 (337)
Q Consensus 144 ~~~iaIvt~GG~apGmNavIr~lv~~l~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~V~~~~~~GGS~LGTsR~~~d~~ 223 (337)
..+||++...-.-|=...++.++.+.+.+ + +.+++-.. +....+...
T Consensus 68 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~-~-g~~~~~~~-------------------------------~~~~~~~~~ 114 (344)
T 3kjx_A 68 VNLVAVIIPSLSNMVFPEVLTGINQVLED-T-ELQPVVGV-------------------------------TDYLPEKEE 114 (344)
T ss_dssp CSEEEEEESCSSSSSHHHHHHHHHHHHTS-S-SSEEEEEE-------------------------------CTTCHHHHH
T ss_pred CCEEEEEeCCCCcHHHHHHHHHHHHHHHH-C-CCEEEEEe-------------------------------CCCCHHHHH
Confidence 35899998766667777788888777753 2 22332110 001112234
Q ss_pred HHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEe
Q 019697 224 KIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI 268 (337)
Q Consensus 224 ~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgI 268 (337)
+.++.|...++|++++.+-+.+-. +.+.+.+.+ +++|.+
T Consensus 115 ~~i~~l~~~~vdGiIi~~~~~~~~----~~~~l~~~~--iPvV~i 153 (344)
T 3kjx_A 115 KVLYEMLSWRPSGVIIAGLEHSEA----ARAMLDAAG--IPVVEI 153 (344)
T ss_dssp HHHHHHHTTCCSEEEEECSCCCHH----HHHHHHHCS--SCEEEE
T ss_pred HHHHHHHhCCCCEEEEECCCCCHH----HHHHHHhCC--CCEEEE
Confidence 667778888999999988765542 223344445 445544
No 48
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=60.24 E-value=91 Score=27.52 Aligned_cols=102 Identities=18% Similarity=0.104 Sum_probs=59.8
Q ss_pred CeeEEEEccCCCCchhhHHHHHHHHHHhhhcCCcEEEEEccccccccCCCeeeCChhhHhchhccCCcceeccCCCCchH
Q 019697 144 EVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTN 223 (337)
Q Consensus 144 ~~~iaIvt~GG~apGmNavIr~lv~~l~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~V~~~~~~GGS~LGTsR~~~d~~ 223 (337)
+.+|||+...-.-|=...++.++-+.+.+ ++ .++.- ..+........
T Consensus 3 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~~-------------------------------~~~~~~~~~~~ 49 (330)
T 3uug_A 3 KGSVGIAMPTKSSARWIDDGNNIVKQLQE-AG-YKTDL-------------------------------QYADDDIPNQL 49 (330)
T ss_dssp CCEEEEEECCSSSTHHHHHHHHHHHHHHH-TT-CEEEE-------------------------------EECTTCHHHHH
T ss_pred CcEEEEEeCCCcchHHHHHHHHHHHHHHH-cC-CEEEE-------------------------------eeCCCCHHHHH
Confidence 45899999877778888888888887764 22 22221 01111112234
Q ss_pred HHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeeccccCCccc---cCcccCch
Q 019697 224 KIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAV---IDKSFGFD 286 (337)
Q Consensus 224 ~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTIDNDI~g---tD~S~Gfd 286 (337)
+.++.+...++|++++.+-+.... ....+.+.+.+ ++||.+ |++++. .+.++++|
T Consensus 50 ~~i~~~~~~~vdgiIi~~~~~~~~--~~~~~~~~~~g--iPvV~~----~~~~~~~~~~~~~V~~D 107 (330)
T 3uug_A 50 SQIENMVTKGVKVLVIASIDGTTL--SDVLKQAGEQG--IKVIAY----DRLIRNSGDVSYYATFD 107 (330)
T ss_dssp HHHHHHHHHTCSEEEECCSSGGGG--HHHHHHHHHTT--CEEEEE----SSCCCSCTTCCEEEEEC
T ss_pred HHHHHHHHcCCCEEEEEcCCchhH--HHHHHHHHHCC--CCEEEE----CCCCCCCCceeEEEEeC
Confidence 677888889999999998775321 12223344444 567755 444433 23456655
No 49
>3jzd_A Iron-containing alcohol dehydrogenase; YP_298327.1, putative alcohol dehedrogenase, structural GENO joint center for structural genomics; HET: MSE NAD PG4 P6G PGE; 2.10A {Ralstonia eutropha}
Probab=60.21 E-value=9.1 Score=36.67 Aligned_cols=47 Identities=19% Similarity=0.289 Sum_probs=39.9
Q ss_pred chHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeeccc
Q 019697 221 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTI 272 (337)
Q Consensus 221 d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTI 272 (337)
..+++++.+++.+.|.++-|||--++..|..++-. + .+++|.||-|-
T Consensus 77 ~v~~~~~~~~~~~~D~IIavGGGsviD~aK~iA~~---~--~~p~i~IPTT~ 123 (358)
T 3jzd_A 77 SARDATARAREAGADCAVAVGGGSTTGLGKAIALE---T--GMPIVAIPTTY 123 (358)
T ss_dssp HHHHHHHHHHHHTCSEEEEEESHHHHHHHHHHHHH---H--CCCEEEEECSS
T ss_pred HHHHHHHHhhccCCCEEEEeCCcHHHHHHHHHHhc---c--CCCEEEEeCCc
Confidence 46788999999999999999998889888888753 2 36799999985
No 50
>3hl0_A Maleylacetate reductase; structur genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE NAD EPE; 1.60A {Agrobacterium tumefaciens str}
Probab=60.20 E-value=9.8 Score=36.35 Aligned_cols=50 Identities=24% Similarity=0.215 Sum_probs=41.9
Q ss_pred chHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeeccccCCc
Q 019697 221 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDI 276 (337)
Q Consensus 221 d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTIDNDI 276 (337)
..+++++.+++.+.|.++-|||--++..|..++-. + .+++|.||-|- .+-
T Consensus 75 ~v~~~~~~~~~~~~D~IIavGGGs~iD~aK~iA~~---~--~~p~i~IPTTa-tgS 124 (353)
T 3hl0_A 75 VTKTAVEAYRAAGADCVVSLGGGSTTGLGKAIALR---T--DAAQIVIPTTY-AGS 124 (353)
T ss_dssp HHHHHHHHHHHTTCSEEEEEESHHHHHHHHHHHHH---H--CCEEEEEECSS-CCG
T ss_pred HHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHhc---c--CCCEEEEeCCc-hhh
Confidence 47888999999999999999998889888888753 2 47899999997 554
No 51
>3bfj_A 1,3-propanediol oxidoreductase; opportunistic pathogens, decamer, structural genomics,struct proteomics in europe, spine; 2.70A {Klebsiella pneumoniae}
Probab=59.03 E-value=15 Score=35.18 Aligned_cols=57 Identities=7% Similarity=0.054 Sum_probs=44.1
Q ss_pred CchHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHH------c-------CCceeEEEeeccccCCc
Q 019697 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEK------R-------GLQVAVAGIPKTIDNDI 276 (337)
Q Consensus 220 ~d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~------~-------~~~i~VVgIPkTIDNDI 276 (337)
+..+++++.+++.++|.++-|||--.+..|..++-.... + .-.+++|.||-|-..|-
T Consensus 79 ~~v~~~~~~~~~~~~d~IIavGGGsv~D~aK~iA~~~~~~~~~~d~~~~~~~~~~~~p~i~IPTT~gtgS 148 (387)
T 3bfj_A 79 TNVRDGLAVFRREQCDIIVTVGGGSPHDCGKGIGIAATHEGDLYQYAGIETLTNPLPPIVAVNTTAGTAS 148 (387)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEESHHHHHHHHHHHHHHHSSSCSGGGCBSSCCCSCCCCEEEEECSTTCCG
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcchhhHHHHHHHHHhCCCCHHHHhcccccCCCCCCEEEEeCCCCccc
Confidence 357899999999999999999999888888887764221 1 12578999999985544
No 52
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=58.25 E-value=93 Score=27.01 Aligned_cols=92 Identities=8% Similarity=-0.019 Sum_probs=46.7
Q ss_pred CCeeEEEEccCCCCchhhHHHHHHHHHHhhhcCCcEEEEEccccccccCCCeeeCChhhHhchhccCCcceeccCCCCch
Q 019697 143 DEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDT 222 (337)
Q Consensus 143 ~~~~iaIvt~GG~apGmNavIr~lv~~l~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~V~~~~~~GGS~LGTsR~~~d~ 222 (337)
+..+||++...-.-|-...++.++.+.+.+ ++ .++.-.. -+....+..
T Consensus 7 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~~~~------------------------------~~~~~~~~~ 54 (290)
T 3clk_A 7 SSNVIAAVVSSVRTNFAQQILDGIQEEAHK-NG-YNLIIVY------------------------------SGSADPEEQ 54 (290)
T ss_dssp -CCEEEEECCCCSSSHHHHHHHHHHHHHHT-TT-CEEEEEC---------------------------------------
T ss_pred cCCEEEEEeCCCCChHHHHHHHHHHHHHHH-cC-CeEEEEe------------------------------CCCCCHHHH
Confidence 345899999776777778888888777753 22 2221100 000001122
Q ss_pred HHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeeccc
Q 019697 223 NKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTI 272 (337)
Q Consensus 223 ~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTI 272 (337)
.+.++.+...++|++++.+.+.+- ...+.+.+. .+++|.+-...
T Consensus 55 ~~~~~~l~~~~vdgiI~~~~~~~~----~~~~~l~~~--~iPvV~~~~~~ 98 (290)
T 3clk_A 55 KHALLTAIERPVMGILLLSIALTD----DNLQLLQSS--DVPYCFLSMGF 98 (290)
T ss_dssp -CHHHHHHSSCCSEEEEESCC--------CHHHHHCC----CEEEESCC-
T ss_pred HHHHHHHHhcCCCEEEEecccCCH----HHHHHHHhC--CCCEEEEcCCC
Confidence 345666777889999998876542 122333333 45667654333
No 53
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=57.70 E-value=92 Score=26.80 Aligned_cols=87 Identities=9% Similarity=0.041 Sum_probs=53.3
Q ss_pred CCCeeEEEEccCCCCchhhHHHHHHHHHHhhhcCCcEEEEEccccccccCCCeeeCChhhHhchhccCCcceeccCCCCc
Q 019697 142 SDEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHD 221 (337)
Q Consensus 142 ~~~~~iaIvt~GG~apGmNavIr~lv~~l~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~V~~~~~~GGS~LGTsR~~~d 221 (337)
.+..+||++...-.-|-...++.++.+.+.+ ++ .++.-+ -+......
T Consensus 5 ~~s~~Igvi~~~~~~~~~~~~~~gi~~~~~~-~g-~~~~~~-------------------------------~~~~~~~~ 51 (276)
T 3jy6_A 5 QSSKLIAVIVANIDDYFSTELFKGISSILES-RG-YIGVLF-------------------------------DANADIER 51 (276)
T ss_dssp CCCCEEEEEESCTTSHHHHHHHHHHHHHHHT-TT-CEEEEE-------------------------------ECTTCHHH
T ss_pred CCCcEEEEEeCCCCchHHHHHHHHHHHHHHH-CC-CEEEEE-------------------------------eCCCCHHH
Confidence 3456899999776677777888888777753 22 222211 01111122
Q ss_pred hHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEe
Q 019697 222 TNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI 268 (337)
Q Consensus 222 ~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgI 268 (337)
..+.++.+...++|++++.+.+. ....+.+.+.+ +++|.+
T Consensus 52 ~~~~~~~l~~~~vdgiIi~~~~~-----~~~~~~l~~~~--iPvV~i 91 (276)
T 3jy6_A 52 EKTLLRAIGSRGFDGLILQSFSN-----PQTVQEILHQQ--MPVVSV 91 (276)
T ss_dssp HHHHHHHHHTTTCSEEEEESSCC-----HHHHHHHHTTS--SCEEEE
T ss_pred HHHHHHHHHhCCCCEEEEecCCc-----HHHHHHHHHCC--CCEEEE
Confidence 35678888889999999999887 22334444444 556654
No 54
>3okf_A 3-dehydroquinate synthase; structural genomics, center for structural genomics of infec diseases, csgid, NAD, lyase; HET: NAD; 2.50A {Vibrio cholerae o1 biovar eltor}
Probab=57.08 E-value=4.3 Score=39.77 Aligned_cols=50 Identities=16% Similarity=0.144 Sum_probs=39.7
Q ss_pred CchHHHHHHHHHhCC---CEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeeccc
Q 019697 220 HDTNKIVDNIEDRGI---NQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTI 272 (337)
Q Consensus 220 ~d~~~iv~~L~~~~I---d~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTI 272 (337)
+..+++++.+++.++ |.++-+||--.+..|..++-. +...+++|.||-|.
T Consensus 107 ~~v~~~~~~l~~~~~~R~d~IIAvGGGsv~D~ak~~Aa~---~~rgip~I~IPTTl 159 (390)
T 3okf_A 107 ETFNTVMSFLLEHNYSRDVVVIALGGGVIGDLVGFAAAC---YQRGVDFIQIPTTL 159 (390)
T ss_dssp HHHHHHHHHHHHTTCCTTCEEEEEESHHHHHHHHHHHHH---BTTCCEEEEEECSH
T ss_pred HHHHHHHHHHHhcCCCcCcEEEEECCcHHhhHHHHHHHH---hcCCCCEEEeCCCC
Confidence 357899999999999 699999998888887776542 22347899999996
No 55
>3s81_A Putative aspartate racemase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta fold, cytosol; 1.80A {Salmonella enterica subsp} PDB: 3s7z_A
Probab=56.66 E-value=23 Score=32.52 Aligned_cols=43 Identities=12% Similarity=0.071 Sum_probs=28.2
Q ss_pred CchHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEe
Q 019697 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI 268 (337)
Q Consensus 220 ~d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgI 268 (337)
..+.++++.|++.+.+.+++-.-.-+. ....|.+. +++||++|
T Consensus 86 ~~l~~~~~~L~~~Gad~IVIaCNTah~-~l~~lr~~-----~~iPvigi 128 (268)
T 3s81_A 86 RYLERYLHMLEDAGAECIVIPCNTAHY-WFDDLQNV-----AKARMISI 128 (268)
T ss_dssp HHHHHHHHHHHHTTCSEEECSCSGGGG-GHHHHHHH-----CSSEEECH
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCHHH-HHHHHHHH-----CCCCEEcc
Confidence 456788999999999977766554333 33334332 46777775
No 56
>3rf7_A Iron-containing alcohol dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: NAD EPE; 2.12A {Shewanella denitrificans}
Probab=56.20 E-value=13 Score=35.84 Aligned_cols=57 Identities=16% Similarity=0.163 Sum_probs=43.4
Q ss_pred CchHHHHHHHHHhC---CCEEEEEcCCccHHHHHHHHHHHHHc-------------CCceeEEEeeccccCCc
Q 019697 220 HDTNKIVDNIEDRG---INQVYIIGGDGTQKGAALIYKEVEKR-------------GLQVAVAGIPKTIDNDI 276 (337)
Q Consensus 220 ~d~~~iv~~L~~~~---Id~LviIGGdgs~~~a~~L~e~~~~~-------------~~~i~VVgIPkTIDNDI 276 (337)
+..+++++.+++.+ .|.++-|||--++..|..++-..... +-.+++|.||-|-..|-
T Consensus 93 ~~v~~~~~~~~~~~~~~~D~IIavGGGS~iD~AK~iA~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTTagtgS 165 (375)
T 3rf7_A 93 VQVDELTAQVKAFNTKLPVSVVGLGGGSTMDLAKAVSLMLTNPGSSSEYQGWDLIKNPAVHHIGIPTVSGTGA 165 (375)
T ss_dssp HHHHHHHHHHHHHCSSCCSEEEEEESHHHHHHHHHHHHHTSSCSCGGGGCEESCCCSCCCCEEEEESSCSSCT
T ss_pred HHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCHHHhhccccccCCCCCEEEEcCCCccch
Confidence 35788899999998 99999999998899988887653110 11478999999875443
No 57
>3fst_A 5,10-methylenetetrahydrofolate reductase; TIM barrel, flavin, amino-acid biosynthesis, FAD, flavoprotein, methionine biosynthesis, NAD; HET: FAD MRY; 1.65A {Escherichia coli k-12} PDB: 3fsu_A* 1zp3_A* 1zpt_A* 1zrq_A* 1zp4_A* 2fmn_A* 2fmo_A* 1b5t_A*
Probab=56.15 E-value=22 Score=33.55 Aligned_cols=102 Identities=16% Similarity=0.215 Sum_probs=62.3
Q ss_pred HHHHHHHHhhhcCCcEEEEEccccccccCCCeeeCChhhHhchhccCC-c-ce-eccCC--CCchHHHHHHHHHhCCCEE
Q 019697 163 IREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGG-T-IL-RTSRG--GHDTNKIVDNIEDRGINQV 237 (337)
Q Consensus 163 Ir~lv~~l~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~V~~~~~~GG-S-~L-GTsR~--~~d~~~iv~~L~~~~Id~L 237 (337)
++..++.+... +...+-+.+|-.|.... -+.+.+..+.+.=| . +. =|+|. ..+++.++..++..||+.+
T Consensus 41 l~~~~~~l~~l--~p~fvsVT~gagg~~r~----~t~~~a~~i~~~~g~~~v~Hltc~~~~~~~l~~~L~~~~~~GI~nI 114 (304)
T 3fst_A 41 LWNSIDRLSSL--KPKFVSVTYGANSGERD----RTHSIIKGIKDRTGLEAAPHLTCIDATPDELRTIARDYWNNGIRHI 114 (304)
T ss_dssp HHHHHHHHHTT--CCSEEEECCCTTSSCHH----HHHHHHHHHHHHHCCCEEEEEESTTSCHHHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHhcC--CCCEEEEeeCCCCcchh----HHHHHHHHHHHHhCCCeeEEeecCCCCHHHHHHHHHHHHHCCCCEE
Confidence 34444555432 23556677776664322 22233444443222 1 11 24554 3567888899999999999
Q ss_pred EEEcCCcc------HHHHHHHHHHHHHc-CCceeEEEeec
Q 019697 238 YIIGGDGT------QKGAALIYKEVEKR-GLQVAVAGIPK 270 (337)
Q Consensus 238 viIGGdgs------~~~a~~L~e~~~~~-~~~i~VVgIPk 270 (337)
+++.||-. +..|..|.+.+++. ++.|.+.+-|-
T Consensus 115 LaLrGDpp~~~~~~~~~A~dLv~~ir~~~~f~IgvA~yPE 154 (304)
T 3fst_A 115 VALRGDLPPGSGKPEMYASDLVTLLKEVADFDISVAAYPE 154 (304)
T ss_dssp EEECCCCC------CCCHHHHHHHHHHHCCCEEEEEECTT
T ss_pred EEecCCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCC
Confidence 99999843 44477888887665 78888888773
No 58
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=55.81 E-value=80 Score=28.36 Aligned_cols=29 Identities=7% Similarity=-0.136 Sum_probs=22.1
Q ss_pred CeeEEEEccCCCCchhhHHHHHHHHHHhh
Q 019697 144 EVRACIVTCGGLCPGINTVIREIVCGLSY 172 (337)
Q Consensus 144 ~~~iaIvt~GG~apGmNavIr~lv~~l~~ 172 (337)
..+||++...-.-|-...++.++-..+.+
T Consensus 62 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~ 90 (339)
T 3h5o_A 62 SRTVLVLIPSLANTVFLETLTGIETVLDA 90 (339)
T ss_dssp -CEEEEEESCSTTCTTHHHHHHHHHHHHH
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence 35899998776677778888888887764
No 59
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=54.92 E-value=1.1e+02 Score=26.83 Aligned_cols=86 Identities=12% Similarity=0.102 Sum_probs=49.9
Q ss_pred CeeEEEEccCCCCchhhHHHHHHHHHHhhhcCCcEEEEEccccccccCCCeeeCChhhHhchhccCCcceeccCC-CCch
Q 019697 144 EVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRG-GHDT 222 (337)
Q Consensus 144 ~~~iaIvt~GG~apGmNavIr~lv~~l~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~V~~~~~~GGS~LGTsR~-~~d~ 222 (337)
+.+||++...-..|-...++.++-+.+.+ ++ .++. +..+.. ....
T Consensus 2 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~-~g-~~l~--------------------------------~~~~~~~~~~~ 47 (306)
T 2vk2_A 2 PLTVGFSQVGSESGWRAAETNVAKSEAEK-RG-ITLK--------------------------------IADGQQKQENQ 47 (306)
T ss_dssp CCEEEEEECCCCSHHHHHHHHHHHHHHHH-HT-CEEE--------------------------------EEECTTCHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHHH-cC-CEEE--------------------------------EeCCCCCHHHH
Confidence 36899999776666677777777776654 22 1221 111111 1123
Q ss_pred HHHHHHHHHhCCCEEEEEcCCccH-HHHHHHHHHHHHcCCceeEEEe
Q 019697 223 NKIVDNIEDRGINQVYIIGGDGTQ-KGAALIYKEVEKRGLQVAVAGI 268 (337)
Q Consensus 223 ~~iv~~L~~~~Id~LviIGGdgs~-~~a~~L~e~~~~~~~~i~VVgI 268 (337)
.+.++.|...++|++++.+.+... .. ..+.+.+.+ ++||.+
T Consensus 48 ~~~i~~l~~~~vdgiIi~~~~~~~~~~---~~~~~~~~~--iPvV~~ 89 (306)
T 2vk2_A 48 IKAVRSFVAQGVDAIFIAPVVATGWEP---VLKEAKDAE--IPVFLL 89 (306)
T ss_dssp HHHHHHHHHHTCSEEEECCSSSSSCHH---HHHHHHHTT--CCEEEE
T ss_pred HHHHHHHHHcCCCEEEEeCCChhhHHH---HHHHHHHCC--CCEEEe
Confidence 456778888999999999876542 22 223333444 556654
No 60
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=54.42 E-value=1.1e+02 Score=26.63 Aligned_cols=131 Identities=7% Similarity=-0.008 Sum_probs=72.9
Q ss_pred CCeeEEEEccCCCCchhhHHHHHHHHHHhhhcCCcEEEEEccccccccCCCeeeCChhhHhchhccCCcceeccCC-CCc
Q 019697 143 DEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRG-GHD 221 (337)
Q Consensus 143 ~~~~iaIvt~GG~apGmNavIr~lv~~l~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~V~~~~~~GGS~LGTsR~-~~d 221 (337)
+..+|+++.....-|=...++.++.+.+.+ ++ .++.-+ ..+.. ...
T Consensus 3 ~~~~I~~i~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~~~-------------------------------~~~~~~~~~ 49 (305)
T 3g1w_A 3 LNETYMMITFQSGMDYWKRCLKGFEDAAQA-LN-VTVEYR-------------------------------GAAQYDIQE 49 (305)
T ss_dssp --CEEEEEESSTTSTHHHHHHHHHHHHHHH-HT-CEEEEE-------------------------------ECSSSCHHH
T ss_pred CCceEEEEEccCCChHHHHHHHHHHHHHHH-cC-CEEEEe-------------------------------CCCcCCHHH
Confidence 345899999888888888899998887764 22 222210 11111 123
Q ss_pred hHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeeccccCCcccc--CcccCchhHHHHHHHHHHHH
Q 019697 222 TNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVI--DKSFGFDTAVEEAQRAINAA 299 (337)
Q Consensus 222 ~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTIDNDI~gt--D~S~GfdTAv~~~~~~i~~i 299 (337)
..+.++.+...++|++++.+.+.... ....+.+.+.+ ++||.+ |++++.. ..++++|-. +....+.+.+
T Consensus 50 ~~~~i~~l~~~~vdgiIi~~~~~~~~--~~~~~~~~~~~--iPvV~~----~~~~~~~~~~~~V~~d~~-~~g~~~~~~l 120 (305)
T 3g1w_A 50 QITVLEQAIAKNPAGIAISAIDPVEL--TDTINKAVDAG--IPIVLF----DSGAPDSHAHSFLGTNNY-NAGMNAAYKM 120 (305)
T ss_dssp HHHHHHHHHHHCCSEEEECCSSTTTT--HHHHHHHHHTT--CCEEEE----SSCCTTSCCSCEEECCHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCEEEEcCCCHHHH--HHHHHHHHHCC--CcEEEE----CCCCCCCceeEEECcCHH-HHHHHHHHHH
Confidence 45677888889999999998776521 11223334444 556654 4444432 245665542 2223333333
Q ss_pred HHhhhcCCCeEEEEEec
Q 019697 300 HVEVESVENGVGIVKLM 316 (337)
Q Consensus 300 ~~~A~S~~~rV~iVEvM 316 (337)
......+ ++|.++--.
T Consensus 121 ~~~~~g~-~~i~~i~~~ 136 (305)
T 3g1w_A 121 AELLDGE-GEVAVITLP 136 (305)
T ss_dssp HHHTTTC-EEEEEEECT
T ss_pred HHHhCCC-cEEEEEeCC
Confidence 3332243 568887643
No 61
>1vlj_A NADH-dependent butanol dehydrogenase; TM0820, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: NAP; 1.78A {Thermotoga maritima} SCOP: e.22.1.2
Probab=53.04 E-value=15 Score=35.55 Aligned_cols=57 Identities=9% Similarity=0.098 Sum_probs=43.8
Q ss_pred CchHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHH-------------cCCceeEEEeeccccCCc
Q 019697 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEK-------------RGLQVAVAGIPKTIDNDI 276 (337)
Q Consensus 220 ~d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~-------------~~~~i~VVgIPkTIDNDI 276 (337)
+..+++++.+++.++|.++-|||--.+..|..++-.... ..-.+++|.||-|-..|-
T Consensus 88 ~~v~~~~~~~~~~~~D~IIavGGGsviD~AK~iA~~~~~~~~~~d~~~~~~~~~~~~p~i~IPTTagtgS 157 (407)
T 1vlj_A 88 SKVHEAVEVAKKEKVEAVLGVGGGSVVDSAKAVAAGALYEGDIWDAFIGKYQIEKALPIFDVLTISATGT 157 (407)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEESHHHHHHHHHHHHHTTCSSCGGGGGGTSCCCCCCCCEEEEECSCSSCG
T ss_pred HHHHHHHHHHHhcCCCEEEEeCChhHHHHHHHHHHHHhCCCCHHHHhcccccCCCCCCEEEEeCCCCcch
Confidence 357889999999999999999999889988888764210 013578999999975443
No 62
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=53.02 E-value=94 Score=28.14 Aligned_cols=85 Identities=8% Similarity=0.020 Sum_probs=50.7
Q ss_pred CeeEEEEccCCCCchhhHHHHHHHHHHhhhcCCcEEEEEccccccccCCCeeeCChhhHhchhccCCcceeccCC-CCch
Q 019697 144 EVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRG-GHDT 222 (337)
Q Consensus 144 ~~~iaIvt~GG~apGmNavIr~lv~~l~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~V~~~~~~GGS~LGTsR~-~~d~ 222 (337)
..+||++...-.-|-...++.++.+.+.+ ++ .+++- ..+.. .+..
T Consensus 70 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~~--------------------------------~~~~~~~~~~ 115 (355)
T 3e3m_A 70 SGFVGLLLPSLNNLHFAQTAQSLTDVLEQ-GG-LQLLL--------------------------------GYTAYSPERE 115 (355)
T ss_dssp -CEEEEEESCSBCHHHHHHHHHHHHHHHH-TT-CEEEE--------------------------------EECTTCHHHH
T ss_pred CCEEEEEeCCCCchHHHHHHHHHHHHHHH-CC-CEEEE--------------------------------EeCCCChHHH
Confidence 34899998766667777788888777754 22 23321 11111 1123
Q ss_pred HHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEe
Q 019697 223 NKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI 268 (337)
Q Consensus 223 ~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgI 268 (337)
.+.++.|...++|++++.+.+.+.. ..+.+.+.+ +|+|.+
T Consensus 116 ~~~~~~l~~~~vdGiI~~~~~~~~~----~~~~l~~~~--iPvV~i 155 (355)
T 3e3m_A 116 EQLVETMLRRRPEAMVLSYDGHTEQ----TIRLLQRAS--IPIVEI 155 (355)
T ss_dssp HHHHHHHHHTCCSEEEEECSCCCHH----HHHHHHHCC--SCEEEE
T ss_pred HHHHHHHHhCCCCEEEEeCCCCCHH----HHHHHHhCC--CCEEEE
Confidence 4677888889999999998776542 223344445 456655
No 63
>3cqj_A L-ribulose-5-phosphate 3-epimerase ULAE; TIM-barrel, isomerase, phosphate-binding motif; 2.04A {Escherichia coli} PDB: 3cqi_A 3cqh_A 3cqk_A
Probab=52.86 E-value=1.1e+02 Score=26.90 Aligned_cols=50 Identities=8% Similarity=0.085 Sum_probs=29.5
Q ss_pred CchHHHHHHHHHhCCCEEEEEcCCc---------cHHHHHHHHHHHHHcCCceeEEEee
Q 019697 220 HDTNKIVDNIEDRGINQVYIIGGDG---------TQKGAALIYKEVEKRGLQVAVAGIP 269 (337)
Q Consensus 220 ~d~~~iv~~L~~~~Id~LviIGGdg---------s~~~a~~L~e~~~~~~~~i~VVgIP 269 (337)
.++++.++.+++.|++++=+..... +...+..+.+.++++|+++..++.|
T Consensus 30 ~~~~~~l~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~~~~~ 88 (295)
T 3cqj_A 30 ECWLERLQLAKTLGFDFVEMSVDETDERLSRLDWSREQRLALVNAIVETGVRVPSMCLS 88 (295)
T ss_dssp SCHHHHHHHHHHTTCSEEEEECCSSHHHHGGGGCCHHHHHHHHHHHHHHCCEEEEEEEG
T ss_pred CCHHHHHHHHHhcCCCEEEEecCCcccccCcccCCHHHHHHHHHHHHHcCCeEEEEecC
Confidence 4566777777777777766654432 2334555666666667666555544
No 64
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=52.10 E-value=1.1e+02 Score=26.18 Aligned_cols=126 Identities=12% Similarity=0.030 Sum_probs=62.8
Q ss_pred eeEEEEccCCCCchhhHHHHHHHHHHhhhcCCcEEEEEccccccccCCCeeeCChhhHhchhccCCcceeccCCC-CchH
Q 019697 145 VRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGG-HDTN 223 (337)
Q Consensus 145 ~~iaIvt~GG~apGmNavIr~lv~~l~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~V~~~~~~GGS~LGTsR~~-~d~~ 223 (337)
.+||++...-.-|-...++.++-+.+.+ ++ .+++ +.++... ....
T Consensus 2 ~~Igvi~~~~~~~f~~~~~~gi~~~~~~-~g-~~~~--------------------------------~~~~~~~~~~~~ 47 (271)
T 2dri_A 2 DTIALVVSTLNNPFFVSLKDGAQKEADK-LG-YNLV--------------------------------VLDSQNNPAKEL 47 (271)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHH-HT-CEEE--------------------------------EEECTTCHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHHHHHHHH-cC-cEEE--------------------------------EeCCCCCHHHHH
Confidence 3788888665666677778887777654 22 2222 1111111 1123
Q ss_pred HHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeeccccCCccccC--cccCchhHHHHHHHHHHHHHH
Q 019697 224 KIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVID--KSFGFDTAVEEAQRAINAAHV 301 (337)
Q Consensus 224 ~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTIDNDI~gtD--~S~GfdTAv~~~~~~i~~i~~ 301 (337)
+.++.+...++|++++.+.+.... ..+.+.+.+.+ +|+|.+ |++.+..+ .+++.|-. .....+.+.+..
T Consensus 48 ~~i~~l~~~~vdgiIi~~~~~~~~--~~~~~~~~~~~--iPvV~i----~~~~~~~~~~~~V~~D~~-~~g~~a~~~L~~ 118 (271)
T 2dri_A 48 ANVQDLTVRGTKILLINPTDSDAV--GNAVKMANQAN--IPVITL----DRQATKGEVVSHIASDNV-LGGKIAGDYIAK 118 (271)
T ss_dssp HHHHHHTTTTEEEEEECCSSTTTT--HHHHHHHHHTT--CCEEEE----SSCCSSSCCSEEEEECHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEEeCCChHHH--HHHHHHHHHCC--CcEEEe----cCCCCCCceeEEEecChH-HHHHHHHHHHHH
Confidence 556777788999999887654311 11223344444 556644 44443322 24565531 122223333332
Q ss_pred hhhcCCCeEEEEE
Q 019697 302 EVESVENGVGIVK 314 (337)
Q Consensus 302 ~A~S~~~rV~iVE 314 (337)
....+ ++|.++-
T Consensus 119 ~g~g~-~~I~~i~ 130 (271)
T 2dri_A 119 KAGEG-AKVIELQ 130 (271)
T ss_dssp HHCTT-CEEEEEE
T ss_pred HcCCC-CeEEEEE
Confidence 22222 4677765
No 65
>1xah_A Sadhqs, 3-dehydroquinate synthase; shikimate pathway, aromatic amino acid biosynthesis, open form, form B, domain movement, cyclase; HET: NAD; 2.20A {Staphylococcus aureus} PDB: 1xag_A* 1xai_A* 1xaj_A* 1xal_A*
Probab=50.80 E-value=21 Score=33.80 Aligned_cols=50 Identities=18% Similarity=0.276 Sum_probs=40.4
Q ss_pred CchHHHHHHHHHhCC---CEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeeccc
Q 019697 220 HDTNKIVDNIEDRGI---NQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTI 272 (337)
Q Consensus 220 ~d~~~iv~~L~~~~I---d~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTI 272 (337)
+..+++++.++++++ |.++-+||--.+..|..++-.. .-.+++|.||-|.
T Consensus 74 ~~v~~~~~~~~~~~~~r~d~iIavGGGsv~D~ak~vA~~~---~rgip~i~IPTT~ 126 (354)
T 1xah_A 74 EQYQETLEYILSHHVTRNTAIIAVGGGATGDFAGFVAATL---LRGVHFIQVPTTI 126 (354)
T ss_dssp HHHHHHHHHHHTTCCCTTCEEEEEESHHHHHHHHHHHHHB---TTCCEEEEEECST
T ss_pred HHHHHHHHHHHHcCCCCCceEEEECChHHHHHHHHHHHHh---ccCCCEEEECCcc
Confidence 357889999999999 8999999988888887776432 2347899999985
No 66
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=50.79 E-value=1.2e+02 Score=26.09 Aligned_cols=90 Identities=11% Similarity=0.051 Sum_probs=53.5
Q ss_pred CCeeEEEEccCCCCchhhHHHHHHHHHHhhhcCCcEEEEEccccccccCCCeeeCChhhHhchhccCCcceeccCCCCch
Q 019697 143 DEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDT 222 (337)
Q Consensus 143 ~~~~iaIvt~GG~apGmNavIr~lv~~l~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~V~~~~~~GGS~LGTsR~~~d~ 222 (337)
+..+||++...-.-|=...++.++.+.+.+ ++ .++.-+ -+.......
T Consensus 7 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~~~-------------------------------~~~~~~~~~ 53 (293)
T 3l6u_A 7 KRNIVGFTIVNDKHEFAQRLINAFKAEAKA-NK-YEALVA-------------------------------TSQNSRISE 53 (293)
T ss_dssp --CEEEEEESCSCSHHHHHHHHHHHHHHHH-TT-CEEEEE-------------------------------ECSSCHHHH
T ss_pred CCcEEEEEEecCCcHHHHHHHHHHHHHHHH-cC-CEEEEE-------------------------------CCCCCHHHH
Confidence 345899999877777777888888777764 22 222211 011111223
Q ss_pred HHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEee
Q 019697 223 NKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIP 269 (337)
Q Consensus 223 ~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIP 269 (337)
.+.++.|...++|++++.+.+.... ..+.+.+.+.+ ++||.+=
T Consensus 54 ~~~~~~l~~~~vdgiI~~~~~~~~~--~~~~~~~~~~~--iPvV~~~ 96 (293)
T 3l6u_A 54 REQILEFVHLKVDAIFITTLDDVYI--GSAIEEAKKAG--IPVFAID 96 (293)
T ss_dssp HHHHHHHHHTTCSEEEEECSCTTTT--HHHHHHHHHTT--CCEEEES
T ss_pred HHHHHHHHHcCCCEEEEecCChHHH--HHHHHHHHHcC--CCEEEec
Confidence 4677888889999999998776542 12223344444 5567653
No 67
>1x60_A Sporulation-specific N-acetylmuramoyl-L-alanine amidase; CWLC, CWLCR, peptidoglycan, cell WALL lytic amidase, tandem repeats, hydrolase; NMR {Bacillus subtilis}
Probab=50.70 E-value=26 Score=25.55 Aligned_cols=50 Identities=14% Similarity=0.277 Sum_probs=40.0
Q ss_pred eeccCCCCchHHHHHHHHHhCCC---------EEEEEcCCccHHHHHHHHHHHHHcCCc
Q 019697 213 LRTSRGGHDTNKIVDNIEDRGIN---------QVYIIGGDGTQKGAALIYKEVEKRGLQ 262 (337)
Q Consensus 213 LGTsR~~~d~~~iv~~L~~~~Id---------~LviIGGdgs~~~a~~L~e~~~~~~~~ 262 (337)
+|+-+...+.+++.+.|++.+++ +-+.+|.+.+...|..+.+.+++.|++
T Consensus 14 vGaf~~~~~A~~~~~~L~~~g~~~~i~~~~~~yRV~vGpf~~~~~A~~~~~~L~~~g~~ 72 (79)
T 1x60_A 14 IGAFKVKANADSLASNAEAKGFDSIVLLKDGLYKVQIGAFSSKDNADTLAARAKNAGFD 72 (79)
T ss_dssp EEEESCHHHHHHHHHHHHHHTCCEEEEEETTEEEEEEEEESSHHHHHHHHHHHHHHTSC
T ss_pred EEEcCCHHHHHHHHHHHHhCCCCeEEecCCcEEEEEECCcCCHHHHHHHHHHHHHcCCc
Confidence 45556666778888999888877 457788889999999999988887875
No 68
>3clh_A 3-dehydroquinate synthase; shikimate pathway, aromatic amino acid biosynthesis, DHQS, amino-acid biosynthesis, cytoplasm, lyase, NAD; HET: NAD; 2.40A {Helicobacter pylori}
Probab=50.49 E-value=23 Score=33.44 Aligned_cols=50 Identities=16% Similarity=0.229 Sum_probs=40.1
Q ss_pred CchHHHHHHHHHhCC---CEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeeccc
Q 019697 220 HDTNKIVDNIEDRGI---NQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTI 272 (337)
Q Consensus 220 ~d~~~iv~~L~~~~I---d~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTI 272 (337)
+..+++++.++++++ |.++-+||--.+..|..++-. +.-.+++|.||-|.
T Consensus 69 ~~v~~~~~~~~~~~~~r~d~iIavGGGsv~D~ak~~A~~---~~rgip~i~IPTTl 121 (343)
T 3clh_A 69 HSLERILNNAFEMQLNRHSLMIALGGGVISDMVGFASSI---YFRGIDFINIPTTL 121 (343)
T ss_dssp HHHHHHHHHHHHTTCCTTCEEEEEESHHHHHHHHHHHHH---BTTCCEEEEEECSH
T ss_pred HHHHHHHHHHHhcCCCCCceEEEECChHHHHHHHHHHHH---hccCCCEEEeCCch
Confidence 357899999999999 999999998888887777643 22247899999984
No 69
>2gru_A 2-deoxy-scyllo-inosose synthase; aminoglycoside, 2-deoxystreptamine, dehydroquinate synthase, lyase; HET: NAD EXO CAK; 2.15A {Bacillus circulans} PDB: 2d2x_A*
Probab=50.20 E-value=17 Score=34.79 Aligned_cols=49 Identities=20% Similarity=0.311 Sum_probs=37.8
Q ss_pred chHHHHHHHHHhCC---CEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeeccc
Q 019697 221 DTNKIVDNIEDRGI---NQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTI 272 (337)
Q Consensus 221 d~~~iv~~L~~~~I---d~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTI 272 (337)
..+++++.+.++++ |.++-+||--.+..|..++-.. .++ +++|.||-|.
T Consensus 79 ~v~~~~~~~~~~~~~r~d~iIalGGGsv~D~ak~~Aa~~-~rg--ip~i~IPTTl 130 (368)
T 2gru_A 79 TVTNLQERAIALGANRRTAIVAVGGGLTGNVAGVAAGMM-FRG--IALIHVPTTF 130 (368)
T ss_dssp HHHHHHHHHHHTTCCTTEEEEEEESHHHHHHHHHHHHHB-TTC--CEEEEEECSH
T ss_pred HHHHHHHHHHhcCCCCCcEEEEECChHHHHHHHHHHHHh-cCC--CCEEEECCch
Confidence 46788899999985 8999999987777777666431 234 7899999995
No 70
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=50.03 E-value=52 Score=28.29 Aligned_cols=121 Identities=9% Similarity=-0.029 Sum_probs=60.2
Q ss_pred CeeEEEEccCCCCchhhHHHHHHHHHHhhhcCCcEEEEEccccccccCCCeeeCChhhHhchhccCCcceeccCCCCchH
Q 019697 144 EVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTN 223 (337)
Q Consensus 144 ~~~iaIvt~GG~apGmNavIr~lv~~l~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~V~~~~~~GGS~LGTsR~~~d~~ 223 (337)
..+||++...-.-|=...++.++...+.+ ++ .++.- ..+........
T Consensus 8 ~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~-~g-~~~~~-------------------------------~~~~~~~~~~~ 54 (277)
T 3e61_A 8 SKLIGLLLPDMSNPFFTLIARGVEDVALA-HG-YQVLI-------------------------------GNSDNDIKKAQ 54 (277)
T ss_dssp --CEEEEESCTTSHHHHHHHHHHHHHHHH-TT-CCEEE-------------------------------EECTTCHHHHH
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHHH-CC-CEEEE-------------------------------EeCCCCHHHHH
Confidence 45899998766667777778887777754 22 22210 00111112345
Q ss_pred HHHHHHHHhCCCEEEEEcCCccHHHHHHHHH-HHHHcCCceeEEEeeccccCCccccCcccCchhHHHHHHHHHHHHHHh
Q 019697 224 KIVDNIEDRGINQVYIIGGDGTQKGAALIYK-EVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVE 302 (337)
Q Consensus 224 ~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e-~~~~~~~~i~VVgIPkTIDNDI~gtD~S~GfdTAv~~~~~~i~~i~~~ 302 (337)
++++.+...++|++++.+.+ - ...+ .+.+.+ +++|. +|++.+..+ ++++|-. .....+.+.+..
T Consensus 55 ~~~~~l~~~~~dgiIi~~~~--~----~~~~~~l~~~~--iPvV~----~~~~~~~~~-~V~~D~~-~~g~~a~~~L~~- 119 (277)
T 3e61_A 55 GYLATFVSHNCTGMISTAFN--E----NIIENTLTDHH--IPFVF----IDRINNEHN-GISTNHF-KGGQLQAEVVRK- 119 (277)
T ss_dssp HHHHHHHHTTCSEEEECGGG--H----HHHHHHHHHC---CCEEE----GGGCC----------HH-HHHHHHHHHHHH-
T ss_pred HHHHHHHhCCCCEEEEecCC--h----HHHHHHHHcCC--CCEEE----EeccCCCCC-eEEechH-HHHHHHHHHHHH-
Confidence 67888889999999998832 1 1233 444444 55664 455554444 7776642 122233333332
Q ss_pred hhcCCCeEEEEE
Q 019697 303 VESVENGVGIVK 314 (337)
Q Consensus 303 A~S~~~rV~iVE 314 (337)
..+ ++|.++-
T Consensus 120 -~G~-~~i~~i~ 129 (277)
T 3e61_A 120 -GKG-KNVLIVH 129 (277)
T ss_dssp -TTC-CSEEEEE
T ss_pred -CCC-CeEEEEe
Confidence 244 4677765
No 71
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=49.86 E-value=1.3e+02 Score=26.11 Aligned_cols=87 Identities=14% Similarity=0.114 Sum_probs=53.1
Q ss_pred CeeEEEEccCCCCchhhHHHHHHHHHHhhhcCCcEEEEEccccccccCCCeeeCChhhHhchhccCCcceeccCCCCchH
Q 019697 144 EVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTN 223 (337)
Q Consensus 144 ~~~iaIvt~GG~apGmNavIr~lv~~l~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~V~~~~~~GGS~LGTsR~~~d~~ 223 (337)
+.+||++...-.-|=...++.++-+.+.+. + .+++ ++.+ .......
T Consensus 2 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~-g-~~~~-------------------------------~~~~-~~~~~~~ 47 (306)
T 8abp_A 2 NLKLGFLVKQPEEPWFQTEWKFADKAGKDL-G-FEVI-------------------------------KIAV-PDGEKTL 47 (306)
T ss_dssp CEEEEEEESCTTSHHHHHHHHHHHHHHHHH-T-EEEE-------------------------------EEEC-CSHHHHH
T ss_pred CeEEEEEeCCCCchHHHHHHHHHHHHHHHc-C-CEEE-------------------------------EeCC-CCHHHHH
Confidence 468999997766777777888887777542 2 2221 1111 1112345
Q ss_pred HHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEe
Q 019697 224 KIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI 268 (337)
Q Consensus 224 ~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgI 268 (337)
+.++.+...++|++++.+-+.... ..+.+.+.+.+ +|||.+
T Consensus 48 ~~i~~l~~~~vdgiii~~~~~~~~--~~~~~~~~~~~--iPvV~~ 88 (306)
T 8abp_A 48 NAIDSLAASGAKGFVICTPDPKLG--SAIVAKARGYD--MKVIAV 88 (306)
T ss_dssp HHHHHHHHTTCCEEEEECSCGGGH--HHHHHHHHHTT--CEEEEE
T ss_pred HHHHHHHHcCCCEEEEeCCCchhh--HHHHHHHHHCC--CcEEEe
Confidence 677888889999999998776532 22233444445 556654
No 72
>3ipc_A ABC transporter, substrate binding protein (amino; venus flytrap domain, transport protein; 1.30A {Agrobacterium tumefaciens} PDB: 3ip5_A 3ip6_A 3ip7_A 3ip9_A 3ipa_A
Probab=49.79 E-value=41 Score=30.15 Aligned_cols=106 Identities=14% Similarity=0.131 Sum_probs=60.9
Q ss_pred chhhHHHHHHHHHHhhhcCCcEEEEEccccccccCCCe-eeCChhhHhchhccCCcceeccC---CCCchHHHHHHHHHh
Q 019697 157 PGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNT-LTLSPKVVNDIHKRGGTILRTSR---GGHDTNKIVDNIEDR 232 (337)
Q Consensus 157 pGmNavIr~lv~~l~~~~~~~~v~Gi~~G~~GL~~~~~-~~L~~~~V~~~~~~GGS~LGTsR---~~~d~~~iv~~L~~~ 232 (337)
|.-....+.+++++.+.++..+|.-+.. +..+ ..+.....+.+...|+.+..... +..++...++.+++.
T Consensus 119 ~~~~~~~~~~~~~l~~~~g~~~iaii~~------~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~d~~~~~~~l~~~ 192 (356)
T 3ipc_A 119 GRDDQQGGIAGKYLADHFKDAKVAIIHD------KTPYGQGLADETKKAANAAGVTEVMYEGVNVGDKDFSALISKMKEA 192 (356)
T ss_dssp CCHHHHHHHHHHHHHHHCTTCCEEEEEC------SSHHHHHHHHHHHHHHHHTTCCCSEEEECCTTCCCCHHHHHHHHHT
T ss_pred CChHHHHHHHHHHHHHhcCCCEEEEEeC------CChHHHHHHHHHHHHHHHcCCEEEEEEeeCCCCCCHHHHHHHHHhc
Confidence 3344455666776665445445544422 1111 11111122334556776554332 245788889999999
Q ss_pred CCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeecc
Q 019697 233 GINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKT 271 (337)
Q Consensus 233 ~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkT 271 (337)
+.+.+|+.+-+.. +..+.+.+++.|+++++++....
T Consensus 193 ~~d~v~~~~~~~~---a~~~~~~~~~~g~~~~~~~~~~~ 228 (356)
T 3ipc_A 193 GVSIIYWGGLHTE---AGLIIRQAADQGLKAKLVSGDGI 228 (356)
T ss_dssp TCCEEEEESCHHH---HHHHHHHHHHHTCCCEEEECGGG
T ss_pred CCCEEEEccCchH---HHHHHHHHHHCCCCCcEEEeccc
Confidence 9999887765433 33455666777999888876543
No 73
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=49.48 E-value=80 Score=27.37 Aligned_cols=70 Identities=11% Similarity=0.017 Sum_probs=44.8
Q ss_pred CCeeEEEEccCCCCchhhHHHHHHHHHHhhhcCCcEEEEEccccccccCCCeeeCChhhHhchhccCCcceeccC--CCC
Q 019697 143 DEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSR--GGH 220 (337)
Q Consensus 143 ~~~~iaIvt~GG~apGmNavIr~lv~~l~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~V~~~~~~GGS~LGTsR--~~~ 220 (337)
+..+||++...-.-|-...++.++.+.+.+ ++ .++.- +.+.. ...
T Consensus 4 ~~~~Igvi~~~~~~~~~~~~~~g~~~~a~~-~g-~~~~~-------------------------------~~~~~~~~~~ 50 (304)
T 3o1i_D 4 SDEKICAIYPHLKDSYWLSVNYGMVSEAEK-QG-VNLRV-------------------------------LEAGGYPNKS 50 (304)
T ss_dssp -CCEEEEEESCSCSHHHHHHHHHHHHHHHH-HT-CEEEE-------------------------------EECSSTTCHH
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHH-cC-CeEEE-------------------------------EcCCCCCCHH
Confidence 346899999876677777888888777754 22 22211 11111 112
Q ss_pred chHHHHHHHHHhCCCEEEEEcCCcc
Q 019697 221 DTNKIVDNIEDRGINQVYIIGGDGT 245 (337)
Q Consensus 221 d~~~iv~~L~~~~Id~LviIGGdgs 245 (337)
...+.++.+...++|++++.+.+..
T Consensus 51 ~~~~~~~~~~~~~vdgiii~~~~~~ 75 (304)
T 3o1i_D 51 RQEQQLALCTQWGANAIILGTVDPH 75 (304)
T ss_dssp HHHHHHHHHHHHTCSEEEECCSSTT
T ss_pred HHHHHHHHHHHcCCCEEEEeCCChh
Confidence 3456778888899999999987654
No 74
>1ujn_A Dehydroquinate synthase; riken structu genomics/proteomics initiative, RSGI, structural genomics,; 1.80A {Thermus thermophilus} SCOP: e.22.1.1
Probab=48.90 E-value=20 Score=33.94 Aligned_cols=50 Identities=16% Similarity=0.281 Sum_probs=39.4
Q ss_pred CchHHHHHHHHHhCC---CEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeeccc
Q 019697 220 HDTNKIVDNIEDRGI---NQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTI 272 (337)
Q Consensus 220 ~d~~~iv~~L~~~~I---d~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTI 272 (337)
+..+++++.++++++ |.++-+||--.+..|..++-. +.-.+++|.||-|.
T Consensus 68 ~~v~~~~~~~~~~~~~r~d~IIavGGGsv~D~ak~~A~~---~~rgip~i~IPTTl 120 (348)
T 1ujn_A 68 EVYGKVLSWLAEKGLPRNATLLVVGGGTLTDLGGFVAAT---YLRGVAYLAFPTTT 120 (348)
T ss_dssp HHHHHHHHHHHHHTCCTTCEEEEEESHHHHHHHHHHHHH---BTTCCEEEEEECSH
T ss_pred HHHHHHHHHHHHcCCCCCCEEEEECCcHHHHHHHHHHHH---hccCCCEEEecCcH
Confidence 357889999999998 899999998888887777643 22247899999984
No 75
>1vdr_A DHFR, dihydrofolate reductase; oxidoreductase, halophilic enzyme; 2.55A {Haloferax volcanii} SCOP: c.71.1.1 PDB: 2ith_A 2jyb_A
Probab=48.75 E-value=7.2 Score=32.81 Aligned_cols=50 Identities=16% Similarity=0.258 Sum_probs=39.5
Q ss_pred chHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeeccccCCcc
Q 019697 221 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIA 277 (337)
Q Consensus 221 d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTIDNDI~ 277 (337)
+++++++.+++.+.+-++||||-..++.+..+.+ .+.+--+|..++.|..
T Consensus 81 ~~~~~l~~l~~~~~~~i~viGG~~l~~~~l~lvD-------el~lt~ip~~~~G~~~ 130 (162)
T 1vdr_A 81 SVEEAVDIAASLDAETAYVIGGAAIYALFQPHLD-------RMVLSRVPGEYEGDTY 130 (162)
T ss_dssp SHHHHHHHHHHTTCSCEEEEECHHHHHHHGGGCS-------EEEEEEEEEECCCSEE
T ss_pred CHHHHHHHHHhCCCCcEEEECCHHHHHHHHHhCC-------EEEEEEEccccccCEE
Confidence 6888899999888889999999888887765433 3667778998877753
No 76
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=48.08 E-value=1.4e+02 Score=26.08 Aligned_cols=85 Identities=11% Similarity=0.051 Sum_probs=49.7
Q ss_pred CeeEEEEccC-----CCCchhhHHHHHHHHHHhhhcCCcEEEEEccccccccCCCeeeCChhhHhchhccCCcceeccCC
Q 019697 144 EVRACIVTCG-----GLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRG 218 (337)
Q Consensus 144 ~~~iaIvt~G-----G~apGmNavIr~lv~~l~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~V~~~~~~GGS~LGTsR~ 218 (337)
..+||++... -.-|=...++.++.+.+.+ ++ .++.- ..+..
T Consensus 22 ~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~~--------------------------------~~~~~ 67 (305)
T 3huu_A 22 TLTIGLIQKSSAPEIRQNPFNSDVLNGINQACNV-RG-YSTRM--------------------------------TVSEN 67 (305)
T ss_dssp CCEEEEECSCCSHHHHTSHHHHHHHHHHHHHHHH-HT-CEEEE--------------------------------CCCSS
T ss_pred CCEEEEEeCCCccccccCcHHHHHHHHHHHHHHH-CC-CEEEE--------------------------------EeCCC
Confidence 4589999876 4455566677777776654 22 22220 00111
Q ss_pred -CCchHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEe
Q 019697 219 -GHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI 268 (337)
Q Consensus 219 -~~d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgI 268 (337)
.+...++++.+...++|++++.+.+.+-. ..+.+.+.+ +++|.+
T Consensus 68 ~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~----~~~~l~~~~--iPvV~i 112 (305)
T 3huu_A 68 SGDLYHEVKTMIQSKSVDGFILLYSLKDDP----IEHLLNEFK--VPYLIV 112 (305)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEESSCBTTCH----HHHHHHHTT--CCEEEE
T ss_pred ChHHHHHHHHHHHhCCCCEEEEeCCcCCcH----HHHHHHHcC--CCEEEE
Confidence 12235678888899999999998775432 233344445 556654
No 77
>3lkv_A Uncharacterized conserved domain protein; ATPase binding cassette, PSI, MCSG, structural genomics, Pro structure initiative; HET: PHE; 2.20A {Vibrio cholerae}
Probab=48.05 E-value=1.2e+02 Score=27.20 Aligned_cols=73 Identities=12% Similarity=0.176 Sum_probs=46.9
Q ss_pred CCCeeEEEEccCCCCchhhHHHHHHHHHHhhhcCCcEEEEEccccccccCCCeeeCChhhHhchhccCCcceeccCCCCc
Q 019697 142 SDEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHD 221 (337)
Q Consensus 142 ~~~~~iaIvt~GG~apGmNavIr~lv~~l~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~V~~~~~~GGS~LGTsR~~~d 221 (337)
.+..||||++.- .=|.++++-.++...|.+ .+ | .++.-+++. +.+-.| ....
T Consensus 6 ~~~~~igi~q~~-~hp~ld~~~~G~~~~L~~-~G----------~---~~g~nv~~~------~~~a~g-------d~~~ 57 (302)
T 3lkv_A 6 AKTAKVAVSQIV-EHPALDATRQGLLDGLKA-KG----------Y---EEGKNLEFD------YKTAQG-------NPAI 57 (302)
T ss_dssp -CCEEEEEEESC-CCHHHHHHHHHHHHHHHH-TT----------C---CBTTTEEEE------EEECTT-------CHHH
T ss_pred cCCceEEEEEee-cChhHHHHHHHHHHHHHh-hC----------c---ccCCcEEEE------EEeCCC-------CHHH
Confidence 467899999863 579999999999998864 21 1 222222222 111111 1123
Q ss_pred hHHHHHHHHHhCCCEEEEEcC
Q 019697 222 TNKIVDNIEDRGINQVYIIGG 242 (337)
Q Consensus 222 ~~~iv~~L~~~~Id~LviIGG 242 (337)
...+++.|...+.|.++.+|.
T Consensus 58 ~~~~~~~l~~~~~DlIiai~t 78 (302)
T 3lkv_A 58 AVQIARQFVGENPDVLVGIAT 78 (302)
T ss_dssp HHHHHHHHHTTCCSEEEEESH
T ss_pred HHHHHHHHHhcCCcEEEEcCC
Confidence 578899999999998887763
No 78
>3ce9_A Glycerol dehydrogenase; NP_348253.1, 3-dehydroquinate syntha structural genomics, joint center for structural genomics; HET: MSE; 2.37A {Clostridium acetobutylicum atcc 824}
Probab=47.51 E-value=12 Score=35.33 Aligned_cols=51 Identities=14% Similarity=0.161 Sum_probs=40.0
Q ss_pred chHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeeccccCCcc
Q 019697 221 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIA 277 (337)
Q Consensus 221 d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTIDNDI~ 277 (337)
..+++ +.+++.+.|.++-|||--.+..|..++ +. ++ +++|.||-|...|-.
T Consensus 77 ~v~~~-~~~~~~~~d~IIavGGGsv~D~aK~vA-~~--~~--~p~i~IPTT~~tgse 127 (354)
T 3ce9_A 77 EIGTN-AFKIPAEVDALIGIGGGKAIDAVKYMA-FL--RK--LPFISVPTSTSNDGF 127 (354)
T ss_dssp HHHHH-HTTSCTTCCEEEEEESHHHHHHHHHHH-HH--HT--CCEEEEESCCSSGGG
T ss_pred HHHHH-HHhhhcCCCEEEEECChHHHHHHHHHH-hh--cC--CCEEEecCcccCCCC
Confidence 45667 777778999999999988888888887 32 23 679999999976543
No 79
>1cz3_A Dihydrofolate reductase; dimer, hyperthermophIle, oxidoreductase; 2.10A {Thermotoga maritima} SCOP: c.71.1.1 PDB: 1d1g_A*
Probab=46.60 E-value=9.1 Score=32.18 Aligned_cols=48 Identities=19% Similarity=0.290 Sum_probs=37.6
Q ss_pred CchHHHHHHHHHhCCCEEEEEcCCccHHHHHH--HHHHHHHcCCceeEEEeeccccC
Q 019697 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAAL--IYKEVEKRGLQVAVAGIPKTIDN 274 (337)
Q Consensus 220 ~d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~--L~e~~~~~~~~i~VVgIPkTIDN 274 (337)
.+++++++.|++.+++-++|+||-..+..+.. |.+ ++.+.-+|+.+..
T Consensus 80 ~~l~~~l~~l~~~~~~~i~v~GG~~l~~~~l~~~lvD-------el~l~~~p~~lG~ 129 (168)
T 1cz3_A 80 GSPADVVKFLEGKGYERVAVIGGKTVFTEFLREKLVD-------ELFVTVEPYVFGK 129 (168)
T ss_dssp SCHHHHHHHHHHTTCSEEEEEECHHHHHHHHHTTCCS-------EEEEEECSEEESS
T ss_pred CCHHHHHHHHHhCCCCEEEEECCHHHHHHHHhCCCCC-------EEEEEEeceecCC
Confidence 47889999999999999999999877776655 333 3667778887754
No 80
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=45.91 E-value=46 Score=28.99 Aligned_cols=69 Identities=10% Similarity=0.044 Sum_probs=44.6
Q ss_pred CCeeEEEEccCCCCchhhHHHHHHHHHHhhhcCCcEEEEEccccccccCCCeeeCChhhHhchhccCCcceeccCCCCch
Q 019697 143 DEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDT 222 (337)
Q Consensus 143 ~~~~iaIvt~GG~apGmNavIr~lv~~l~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~V~~~~~~GGS~LGTsR~~~d~ 222 (337)
+..+||++...-.-|-...++.++.+.+.+ ++ .++.-+. +....+..
T Consensus 7 ~~~~Igvv~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~~~~-------------------------------~~~~~~~~ 53 (291)
T 3egc_A 7 RSNVVGLIVSDIENVFFAEVASGVESEARH-KG-YSVLLAN-------------------------------TAEDIVRE 53 (291)
T ss_dssp CCCEEEEEESCTTSHHHHHHHHHHHHHHHH-TT-CEEEEEE-------------------------------CTTCHHHH
T ss_pred CCcEEEEEECCCcchHHHHHHHHHHHHHHH-CC-CEEEEEe-------------------------------CCCCHHHH
Confidence 345899999776677777788888777754 22 2332110 11111224
Q ss_pred HHHHHHHHHhCCCEEEEEcCCc
Q 019697 223 NKIVDNIEDRGINQVYIIGGDG 244 (337)
Q Consensus 223 ~~iv~~L~~~~Id~LviIGGdg 244 (337)
.++++.+...++|++++.+.+.
T Consensus 54 ~~~~~~l~~~~vdgiIi~~~~~ 75 (291)
T 3egc_A 54 REAVGQFFERRVDGLILAPSEG 75 (291)
T ss_dssp HHHHHHHHHTTCSEEEECCCSS
T ss_pred HHHHHHHHHCCCCEEEEeCCCC
Confidence 5677888889999999988776
No 81
>3apt_A Methylenetetrahydrofolate reductase; TIM barrel, oxidoreductase, flavin; HET: FAD; 1.85A {Thermus thermophilus} PDB: 3apy_A* 1v93_A*
Probab=45.89 E-value=15 Score=34.55 Aligned_cols=88 Identities=22% Similarity=0.278 Sum_probs=56.8
Q ss_pred EEEEEccccccccCCCeeeCChhhHhchhccCCcce--eccCC--CCchHHHHHHHHHhCCCEEEEEcCCcc--------
Q 019697 178 EILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTIL--RTSRG--GHDTNKIVDNIEDRGINQVYIIGGDGT-------- 245 (337)
Q Consensus 178 ~v~Gi~~G~~GL~~~~~~~L~~~~V~~~~~~GGS~L--GTsR~--~~d~~~iv~~L~~~~Id~LviIGGdgs-------- 245 (337)
..+-+.+|-.|-. .+-+...+..+...|=..+ =|+|+ ..+++.++..++..||+.++++.||-.
T Consensus 44 d~vsVT~~~~g~~----r~~t~~~a~~i~~~g~~~i~Hltc~~~~~~~l~~~L~~~~~~GI~niLaLrGD~p~~~g~~~~ 119 (310)
T 3apt_A 44 AFVSITYGAMGST----RERSVAWAQRIQSLGLNPLAHLTVAGQSRKEVAEVLHRFVESGVENLLALRGDPPRGERVFRP 119 (310)
T ss_dssp SEEEECCCSTTCS----HHHHHHHHHHHHHTTCCBCEEEECTTSCHHHHHHHHHHHHHTTCCEEEEECCCCSTTCCSCCC
T ss_pred CEEEEecCCCCCc----chhHHHHHHHHHHhCCCeEEEeecCCCCHHHHHHHHHHHHHCCCCEEEEEcCCCCCCCCCCCC
Confidence 5566666665532 2223444444543332111 24554 346788888899999999999999932
Q ss_pred ----HHHHHHHHHHHHHc-C--CceeEEEee
Q 019697 246 ----QKGAALIYKEVEKR-G--LQVAVAGIP 269 (337)
Q Consensus 246 ----~~~a~~L~e~~~~~-~--~~i~VVgIP 269 (337)
+..|..|.+.+++. + +.|.+.+-|
T Consensus 120 ~~~~f~~a~~Lv~~ir~~~g~~f~igvA~yP 150 (310)
T 3apt_A 120 HPEGFRYAAELVALIRERYGDRVSVGGAAYP 150 (310)
T ss_dssp CTTSCSSHHHHHHHHHHHHGGGSEEEEEECT
T ss_pred CCCCCCCHHHHHHHHHHhCCCCeEEEEEeCC
Confidence 44688888887776 4 788888888
No 82
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=45.80 E-value=1.5e+02 Score=25.87 Aligned_cols=87 Identities=9% Similarity=0.077 Sum_probs=51.8
Q ss_pred CeeEEEEccCCCCchhhHHHHHHHHHHhhhcCCcEEEEEccccccccCCCeeeCChhhHhchhccCCcceeccCC-CCch
Q 019697 144 EVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRG-GHDT 222 (337)
Q Consensus 144 ~~~iaIvt~GG~apGmNavIr~lv~~l~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~V~~~~~~GGS~LGTsR~-~~d~ 222 (337)
..+||++...-.-|-...++.++.+.+.+ ++ .+++ +..+.. .+..
T Consensus 15 s~~Igvi~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~--------------------------------~~~~~~~~~~~ 60 (303)
T 3kke_A 15 SGTIGLIVPDVNNAVFADMFSGVQMAASG-HS-TDVL--------------------------------LGQIDAPPRGT 60 (303)
T ss_dssp --CEEEEESCTTSTTHHHHHHHHHHHHHH-TT-CCEE--------------------------------EEECCSTTHHH
T ss_pred CCEEEEEeCCCcChHHHHHHHHHHHHHHH-CC-CEEE--------------------------------EEeCCCChHHH
Confidence 35799998776677777888888777754 22 2222 111111 1234
Q ss_pred HHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeec
Q 019697 223 NKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPK 270 (337)
Q Consensus 223 ~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPk 270 (337)
.++++.|...++|++++.+.+.+... ..+.+.+ .++||.+=.
T Consensus 61 ~~~~~~l~~~~vdgiI~~~~~~~~~~---~~~~l~~---~iPvV~i~~ 102 (303)
T 3kke_A 61 QQLSRLVSEGRVDGVLLQRREDFDDD---MLAAVLE---GVPAVTINS 102 (303)
T ss_dssp HHHHHHHHSCSSSEEEECCCTTCCHH---HHHHHHT---TSCEEEESC
T ss_pred HHHHHHHHhCCCcEEEEecCCCCcHH---HHHHHhC---CCCEEEECC
Confidence 56788888899999999987766431 2233333 456665533
No 83
>2pbq_A Molybdenum cofactor biosynthesis MOG; molybdopterin, MPT, structural genomics, NPPSFA, national PR protein structural and functional analyses; 1.70A {Aquifex aeolicus} PDB: 2qq1_A 3mci_A 3mcj_A 3k6a_A* 2f7w_A 2f7y_A 2fuw_A
Probab=45.72 E-value=13 Score=31.95 Aligned_cols=26 Identities=19% Similarity=0.406 Sum_probs=19.2
Q ss_pred CCchHHHHHHHHHh----CCCEEEEEcCCc
Q 019697 219 GHDTNKIVDNIEDR----GINQVYIIGGDG 244 (337)
Q Consensus 219 ~~d~~~iv~~L~~~----~Id~LviIGGdg 244 (337)
.+|.+.|.+.|++. +.|.+++.||-|
T Consensus 50 ~Dd~~~I~~~l~~~~~~~~~DlVittGG~g 79 (178)
T 2pbq_A 50 PDERDLIEKTLIELADEKGCSLILTTGGTG 79 (178)
T ss_dssp CSCHHHHHHHHHHHHHTSCCSEEEEESCCS
T ss_pred CCCHHHHHHHHHHHHhcCCCCEEEECCCCC
Confidence 56677776666654 789999999864
No 84
>1uta_A FTSN, MSGA, cell division protein FTSN; bacterial cell division protein, RNP domain, transmembrane, inner membrane, repeat; NMR {Escherichia coli} SCOP: d.58.52.1
Probab=45.65 E-value=23 Score=26.24 Aligned_cols=52 Identities=13% Similarity=0.215 Sum_probs=40.6
Q ss_pred eeccCCCCchHHHHHHHHHhCCC---------EEEEEcCCccHHHHHHHHHHHHHcCCcee
Q 019697 213 LRTSRGGHDTNKIVDNIEDRGIN---------QVYIIGGDGTQKGAALIYKEVEKRGLQVA 264 (337)
Q Consensus 213 LGTsR~~~d~~~iv~~L~~~~Id---------~LviIGGdgs~~~a~~L~e~~~~~~~~i~ 264 (337)
+|+-+...+-+++.+.|+..++. +-+.+|.+.+...|..+.+.+++.+++..
T Consensus 14 vGaF~~~~~A~~l~~~L~~~G~~a~i~~~~~~yRV~vGpf~s~~~A~~~~~~L~~~g~~~~ 74 (81)
T 1uta_A 14 CGSFRGAEQAETVRAQLAFEGFDSKITTNNGWNRVVIGPVKGKENADSTLNRLKMAGHTNC 74 (81)
T ss_dssp CCEESCHHHHHHHHHHHHHHTCCEEEEECSSSEEEEESSCBTTTHHHHHHHHHHHHCCSCC
T ss_pred EEEcCCHHHHHHHHHHHHhCCCCeEEEeCCcEEEEEECCcCCHHHHHHHHHHHHHcCCCcE
Confidence 45556566778889999988877 45788999999999999888888776543
No 85
>1kq3_A Glycerol dehydrogenase; structural genomics, joint center FO structural genomics, JCSG, protein structure initiative, PS oxidoreductase; 1.50A {Thermotoga maritima} SCOP: e.22.1.2
Probab=45.01 E-value=13 Score=35.41 Aligned_cols=50 Identities=20% Similarity=0.266 Sum_probs=39.1
Q ss_pred chHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeeccccCCc
Q 019697 221 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDI 276 (337)
Q Consensus 221 d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTIDNDI 276 (337)
..+++++.+++ +.|.++-|||--.+..|..++-. + .+++|.||-|-..|-
T Consensus 83 ~v~~~~~~~~~-~~d~IIavGGGsv~D~aK~iA~~---~--~~p~i~IPTTa~tgS 132 (376)
T 1kq3_A 83 EIERLSGLVEE-ETDVVVGIGGGKTLDTAKAVAYK---L--KKPVVIVPTIASTDA 132 (376)
T ss_dssp HHHHHHTTCCT-TCCEEEEEESHHHHHHHHHHHHH---T--TCCEEEEESSCCCSC
T ss_pred HHHHHHHHHhc-CCCEEEEeCCcHHHHHHHHHHHh---c--CCCEEEecCccccCc
Confidence 46677777777 99999999999889888888732 2 477999999865444
No 86
>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima}
Probab=44.64 E-value=1.4e+02 Score=26.75 Aligned_cols=107 Identities=15% Similarity=0.102 Sum_probs=61.7
Q ss_pred chhhHHHHHHHHHHhhhcCCcEEEEEccccccccCCCe-eeCChhhHhchhccCCcceecc--CCCCchHHHHHHHHHhC
Q 019697 157 PGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNT-LTLSPKVVNDIHKRGGTILRTS--RGGHDTNKIVDNIEDRG 233 (337)
Q Consensus 157 pGmNavIr~lv~~l~~~~~~~~v~Gi~~G~~GL~~~~~-~~L~~~~V~~~~~~GGS~LGTs--R~~~d~~~iv~~L~~~~ 233 (337)
|.-....+.+++.+.+.++..++.-+. +-. +.+ ..+.....+.+...|+.+.... .+..|+...++.+++.+
T Consensus 130 ~~~~~~~~~~~~~l~~~~g~~~iaii~-~~~----~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~~d~~~~~~~l~~~~ 204 (366)
T 3td9_A 130 FIDPFQGAAMAVFAYKNLGAKRVVVFT-DVE----QDYSVGLSNFFINKFTELGGQVKRVFFRSGDQDFSAQLSVAMSFN 204 (366)
T ss_dssp CCHHHHHHHHHHHHHHTSCCCEEEEEE-ETT----CHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCCCHHHHHHHHHTC
T ss_pred CCcHHHHHHHHHHHHHhcCCcEEEEEE-eCC----CcHHHHHHHHHHHHHHHCCCEEEEEEeCCCCccHHHHHHHHHhcC
Confidence 333445566677775544544554442 111 111 0111112333455677665543 23457888899999999
Q ss_pred CCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeecc
Q 019697 234 INQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKT 271 (337)
Q Consensus 234 Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkT 271 (337)
.+++|+.+-+. .+..+.+.+++.|+++++++...+
T Consensus 205 ~d~v~~~~~~~---~a~~~~~~~~~~g~~~~~~~~~~~ 239 (366)
T 3td9_A 205 PDAIYITGYYP---EIALISRQARQLGFTGYILAGDGA 239 (366)
T ss_dssp CSEEEECSCHH---HHHHHHHHHHHTTCCSEEEECGGG
T ss_pred CCEEEEccchh---HHHHHHHHHHHcCCCceEEeeCCc
Confidence 99998865432 344566777788999998886544
No 87
>3ors_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase, isomerase,biosynthetic protein; 1.45A {Staphylococcus aureus subsp}
Probab=44.22 E-value=34 Score=29.76 Aligned_cols=55 Identities=18% Similarity=0.282 Sum_probs=36.0
Q ss_pred ceeccCCCCchHHHHHHHHHhCCCEEEEEcC-CccHHHHHHHHHHHHHcCCceeEEEeecccc
Q 019697 212 ILRTSRGGHDTNKIVDNIEDRGINQVYIIGG-DGTQKGAALIYKEVEKRGLQVAVAGIPKTID 273 (337)
Q Consensus 212 ~LGTsR~~~d~~~iv~~L~~~~Id~LviIGG-dgs~~~a~~L~e~~~~~~~~i~VVgIPkTID 273 (337)
+.+--|+.+.+.+++++.++.+++.++.+-| .+.+-++.. - ....||||||-...
T Consensus 37 V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~LpgvvA--~-----~t~~PVIgVP~~~~ 92 (163)
T 3ors_A 37 VVSAHRTPKMMVQFASEARERGINIIIAGAGGAAHLPGMVA--S-----LTTLPVIGVPIETK 92 (163)
T ss_dssp ECCTTTSHHHHHHHHHHTTTTTCCEEEEEEESSCCHHHHHH--H-----HCSSCEEEEEECCT
T ss_pred EECCcCCHHHHHHHHHHHHhCCCcEEEEECCchhhhHHHHH--h-----ccCCCEEEeeCCCC
Confidence 3445577677788888888888997666644 444444322 1 14678999996543
No 88
>3trh_A Phosphoribosylaminoimidazole carboxylase carboxyltransferase subunit; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.20A {Coxiella burnetii}
Probab=43.92 E-value=43 Score=29.31 Aligned_cols=53 Identities=25% Similarity=0.352 Sum_probs=36.1
Q ss_pred ceeccCCCCchHHHHHHHHHhCCCEEEEEcCCc-cHHHHHHHHHHHHHcCCceeEEEeecc
Q 019697 212 ILRTSRGGHDTNKIVDNIEDRGINQVYIIGGDG-TQKGAALIYKEVEKRGLQVAVAGIPKT 271 (337)
Q Consensus 212 ~LGTsR~~~d~~~iv~~L~~~~Id~LviIGGdg-s~~~a~~L~e~~~~~~~~i~VVgIPkT 271 (337)
+.+--|+.+.+.+++++.++.+++.++.+-|-. .+-++.. - ....||||||-.
T Consensus 40 V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~LpgvvA--~-----~t~~PVIgVP~~ 93 (169)
T 3trh_A 40 ILSAHRTPKETVEFVENADNRGCAVFIAAAGLAAHLAGTIA--A-----HTLKPVIGVPMA 93 (169)
T ss_dssp ECCTTTSHHHHHHHHHHHHHTTEEEEEEEECSSCCHHHHHH--H-----TCSSCEEEEECC
T ss_pred EEcccCCHHHHHHHHHHHHhCCCcEEEEECChhhhhHHHHH--h-----cCCCCEEEeecC
Confidence 344557777788899999999999776665544 3444322 1 356899999964
No 89
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=43.69 E-value=1.4e+02 Score=25.97 Aligned_cols=26 Identities=8% Similarity=0.248 Sum_probs=19.7
Q ss_pred chHHHHHHHHHhCCCEEEEEcCCccH
Q 019697 221 DTNKIVDNIEDRGINQVYIIGGDGTQ 246 (337)
Q Consensus 221 d~~~iv~~L~~~~Id~LviIGGdgs~ 246 (337)
...++.+.+...++|++++.+.+.+.
T Consensus 53 ~~~~~~~~l~~~~vdGiIi~~~~~~~ 78 (294)
T 3qk7_A 53 KYQSLIHLVETRRVDALIVAHTQPED 78 (294)
T ss_dssp CCHHHHHHHHHTCCSEEEECSCCSSC
T ss_pred hHHHHHHHHHcCCCCEEEEeCCCCCh
Confidence 34567788888899999988876544
No 90
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=43.53 E-value=1.6e+02 Score=25.50 Aligned_cols=87 Identities=13% Similarity=0.140 Sum_probs=49.5
Q ss_pred CCeeEEEEccCCCCchhhHHHHHHHHHHhhhcCCcEEEEEccccccccCCCeeeCChhhHhchhccCCcceeccCC-CCc
Q 019697 143 DEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRG-GHD 221 (337)
Q Consensus 143 ~~~~iaIvt~GG~apGmNavIr~lv~~l~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~V~~~~~~GGS~LGTsR~-~~d 221 (337)
+..+||++...-.-|-...++.++.+.+.+ ++ .++. +-.+.. ...
T Consensus 15 ~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~--------------------------------~~~~~~~~~~ 60 (289)
T 2fep_A 15 KTTTVGVIIPDISSIFYSELARGIEDIATM-YK-YNII--------------------------------LSNSDQNMEK 60 (289)
T ss_dssp -CCEEEEEESCTTSHHHHHHHHHHHHHHHH-TT-CEEE--------------------------------EEECTTCHHH
T ss_pred CCCeEEEEeCCCCCchHHHHHHHHHHHHHH-cC-CEEE--------------------------------EEeCCCCHHH
Confidence 345899998665566667777787777653 22 2221 001111 112
Q ss_pred hHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEee
Q 019697 222 TNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIP 269 (337)
Q Consensus 222 ~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIP 269 (337)
..+.++.+...++|++++.+.+.+.. ..+.+.+.+ +++|.+-
T Consensus 61 ~~~~~~~l~~~~vdgiIi~~~~~~~~----~~~~l~~~~--iPvV~~~ 102 (289)
T 2fep_A 61 ELHLLNTMLGKQVDGIVFMGGNITDE----HVAEFKRSP--VPIVLAA 102 (289)
T ss_dssp HHHHHHHHHHTTCSEEEECCSCCCHH----HHHHHHHSS--SCEEEES
T ss_pred HHHHHHHHHhCCCCEEEEecCCCCHH----HHHHHHhcC--CCEEEEc
Confidence 34667788889999999988755422 223333444 5566553
No 91
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=42.59 E-value=88 Score=26.19 Aligned_cols=87 Identities=14% Similarity=0.189 Sum_probs=44.4
Q ss_pred CCeeEEEEccCCCCchhhHHHHHHHHHHhhhcCCcEEEEEccccccccCCCeeeCChhh-HhchhccCCcceeccCC-C-
Q 019697 143 DEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKV-VNDIHKRGGTILRTSRG-G- 219 (337)
Q Consensus 143 ~~~~iaIvt~GG~apGmNavIr~lv~~l~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~-V~~~~~~GGS~LGTsR~-~- 219 (337)
.+.||.+.+.||+.--+-.-+-+.. + +. .|.+|+ |.|. ..+++. ++......-.++|-|-. .
T Consensus 17 ~~~~vlla~~~gd~HdiG~~~va~~--l-~~-~G~eVi-----~lG~------~~p~e~lv~aa~~~~~diV~lS~~~~~ 81 (161)
T 2yxb_A 17 RRYKVLVAKMGLDGHDRGAKVVARA--L-RD-AGFEVV-----YTGL------RQTPEQVAMAAVQEDVDVIGVSILNGA 81 (161)
T ss_dssp CSCEEEEEEESSSSCCHHHHHHHHH--H-HH-TTCEEE-----CCCS------BCCHHHHHHHHHHTTCSEEEEEESSSC
T ss_pred CCCEEEEEeCCCCccHHHHHHHHHH--H-HH-CCCEEE-----ECCC------CCCHHHHHHHHHhcCCCEEEEEeechh
Confidence 3458888889998755544333322 2 11 244554 2222 123333 33333334445554332 1
Q ss_pred --CchHHHHHHHHHhCC-CEEEEEcCCc
Q 019697 220 --HDTNKIVDNIEDRGI-NQVYIIGGDG 244 (337)
Q Consensus 220 --~d~~~iv~~L~~~~I-d~LviIGGdg 244 (337)
..+.++++.|++.+. +..+++||--
T Consensus 82 ~~~~~~~~i~~L~~~g~~~i~v~vGG~~ 109 (161)
T 2yxb_A 82 HLHLMKRLMAKLRELGADDIPVVLGGTI 109 (161)
T ss_dssp HHHHHHHHHHHHHHTTCTTSCEEEEECC
T ss_pred hHHHHHHHHHHHHhcCCCCCEEEEeCCC
Confidence 345666777777665 5667777753
No 92
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=42.38 E-value=1.6e+02 Score=25.15 Aligned_cols=87 Identities=8% Similarity=0.038 Sum_probs=48.2
Q ss_pred CCeeEEEEccC--CCCchhhHHHHHHHHHHhhhcCCcEEEEEccccccccCCCeeeCChhhHhchhccCCcceeccCC-C
Q 019697 143 DEVRACIVTCG--GLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRG-G 219 (337)
Q Consensus 143 ~~~~iaIvt~G--G~apGmNavIr~lv~~l~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~V~~~~~~GGS~LGTsR~-~ 219 (337)
+..+||++... -..|-...++.++.+.+.+ .+ .++. +-.... .
T Consensus 18 ~~~~Ig~i~~~~~~~~~~~~~~~~gi~~~~~~-~g-~~~~--------------------------------~~~~~~~~ 63 (296)
T 3brq_A 18 STQTLGLVVTNTLYHGIYFSELLFHAARMAEE-KG-RQLL--------------------------------LADGKHSA 63 (296)
T ss_dssp -CCEEEEEECGGGCC--CHHHHHHHHHHHHHH-TT-CEEE--------------------------------EECCTTSH
T ss_pred CCceEEEEeCCcccCCchHHHHHHHHHHHHHH-CC-CEEE--------------------------------EEeCCCCH
Confidence 34589999865 4556667788888777753 21 1221 000111 1
Q ss_pred CchHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHH-cCCceeEEEee
Q 019697 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEK-RGLQVAVAGIP 269 (337)
Q Consensus 220 ~d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~-~~~~i~VVgIP 269 (337)
+...+.++.+...++|++++.+.+.+-. .+ +.+.+ .+ +++|.+-
T Consensus 64 ~~~~~~~~~l~~~~vdgii~~~~~~~~~---~~-~~l~~~~~--iPvV~~~ 108 (296)
T 3brq_A 64 EEERQAIQYLLDLRCDAIMIYPRFLSVD---EI-DDIIDAHS--QPIMVLN 108 (296)
T ss_dssp HHHHHHHHHHHHTTCSEEEEECSSSCHH---HH-HHHHHTCS--SCEEEES
T ss_pred HHHHHHHHHHHhcCCCEEEEecCCCChH---HH-HHHHhcCC--CCEEEEc
Confidence 1234567777788999999998765432 12 33444 34 5566553
No 93
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=41.71 E-value=1.9e+02 Score=25.72 Aligned_cols=69 Identities=10% Similarity=0.133 Sum_probs=41.5
Q ss_pred CCeeEEEEccCCCCchhhHHHHHHHHHHhhhcCCcEEEEEccccccccCCCeeeCChhhHhchhccCCcceeccCC-CCc
Q 019697 143 DEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRG-GHD 221 (337)
Q Consensus 143 ~~~~iaIvt~GG~apGmNavIr~lv~~l~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~V~~~~~~GGS~LGTsR~-~~d 221 (337)
+..+||++...-.-|-...++.++-+.+.+ ++ .++. +..+.. .+.
T Consensus 62 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~-~g-~~~~--------------------------------~~~~~~~~~~ 107 (332)
T 2o20_A 62 RTTTVGVILPTITSTYFAAITRGVDDIASM-YK-YNMI--------------------------------LANSDNDVEK 107 (332)
T ss_dssp CCCEEEEEESCTTCHHHHHHHHHHHHHHHH-TT-CEEE--------------------------------EEECTTCHHH
T ss_pred CCCEEEEEeCCCCCcHHHHHHHHHHHHHHH-cC-CEEE--------------------------------EEECCCChHH
Confidence 345899998665566666777777776653 22 2221 111111 112
Q ss_pred hHHHHHHHHHhCCCEEEEEcCCcc
Q 019697 222 TNKIVDNIEDRGINQVYIIGGDGT 245 (337)
Q Consensus 222 ~~~iv~~L~~~~Id~LviIGGdgs 245 (337)
..+.++.|...++|++++.+.+..
T Consensus 108 ~~~~~~~l~~~~vdgiI~~~~~~~ 131 (332)
T 2o20_A 108 EEKVLETFLSKQVDGIVYMGSSLD 131 (332)
T ss_dssp HHHHHHHHHHTTCSEEEECSSCCC
T ss_pred HHHHHHHHHhCCCCEEEEeCCCCC
Confidence 345677778889999999886544
No 94
>1ta9_A Glycerol dehydrogenase; oxidoredu; 1.90A {Schizosaccharomyces pombe}
Probab=41.52 E-value=16 Score=36.10 Aligned_cols=50 Identities=20% Similarity=0.263 Sum_probs=38.8
Q ss_pred chHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeeccccCCc
Q 019697 221 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDI 276 (337)
Q Consensus 221 d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTIDNDI 276 (337)
..+++++.+++ +.|.++-|||--.+..|..++-. + .+++|.||-|-..|-
T Consensus 134 ~v~~~~~~~~~-~~D~IIAvGGGSviD~AK~iA~~---~--giP~I~IPTTAgtgS 183 (450)
T 1ta9_A 134 ELDKLRKQCPD-DTQVIIGVGGGKTMDSAKYIAHS---M--NLPSIICPTTASSDA 183 (450)
T ss_dssp HHHHHHTTSCT-TCCEEEEEESHHHHHHHHHHHHH---T--TCCEEEEESSCSCSC
T ss_pred HHHHHHHHHhh-CCCEEEEeCCcHHHHHHHHHHHh---c--CCCEEEEeCCCccCc
Confidence 45666777777 99999999999889998888732 2 477999999955444
No 95
>2omk_A Hypothetical protein; succinimide, thiamin pyrophosphokinase, structural genomics, protein structure initiative; 1.80A {Bacteroides thetaiotaomicron}
Probab=41.10 E-value=1.7e+02 Score=26.27 Aligned_cols=89 Identities=17% Similarity=0.313 Sum_probs=51.5
Q ss_pred eeEEEEccCCCCchhhHHHHHHHHHHhhhcCCcEEEEEccccccccCC---------CeeeCChhhHhchhccCCcceec
Q 019697 145 VRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSK---------NTLTLSPKVVNDIHKRGGTILRT 215 (337)
Q Consensus 145 ~~iaIvt~GG~apGmNavIr~lv~~l~~~~~~~~v~Gi~~G~~GL~~~---------~~~~L~~~~V~~~~~~GGS~LGT 215 (337)
++ ++|.+||+.+- ....+.+. +.. ..++|+-.|..=|++. ++--++++..+.+.. ++--
T Consensus 32 ~~-v~Iv~~G~~~~-~~~~~~~~----~~~--~~iI~aDgGa~~L~~~gi~Pd~ivGDfDSi~~e~~~~~~~----~i~~ 99 (231)
T 2omk_A 32 PQ-AIILANGEYPA-HELPLRLL----AEA--QFVVCCXXAANEYISRGHTPDVIIGDGDSLLPEYKKRFSS----IILQ 99 (231)
T ss_dssp CS-EEEECSSSCCC-SHHHHHHH----HHC--SCEEEC--CHHHHHHTTCCCSEEESCGGGSCHHHHHHHGG----GEEC
T ss_pred CE-EEEEECCCCch-hHHHHHHH----hcC--CEEEEEhHHHHHHHHcCCCCCEEEeCCcCCCHHHHHhcCC----EEEe
Confidence 45 45556777652 22223222 222 3689999988877643 333344444443331 1211
Q ss_pred cCC--CCchHHHHHHHHHhCCCEEEEEcCCcc
Q 019697 216 SRG--GHDTNKIVDNIEDRGINQVYIIGGDGT 245 (337)
Q Consensus 216 sR~--~~d~~~iv~~L~~~~Id~LviIGGdgs 245 (337)
... .-|.++++..+.+++.+-++++|+.|.
T Consensus 100 ~~~kD~TD~e~Al~~a~~~g~~~I~i~Ga~Gg 131 (231)
T 2omk_A 100 ISDQETNDQTKAVHYLQSKGIRKIAIVGATGK 131 (231)
T ss_dssp CCSSCCCHHHHHHHHHHHTTCCEEEEESCSSS
T ss_pred CCCCCCCHHHHHHHHHHHcCCCEEEEECccCC
Confidence 111 247899999999999999999999987
No 96
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=40.86 E-value=1.7e+02 Score=25.01 Aligned_cols=69 Identities=3% Similarity=0.013 Sum_probs=42.4
Q ss_pred CeeEEEEccCCCCchhhHHHHHHHHHHhhhcCCcEEEEEccccccccCCCeeeCChhhHhchhccCCcceeccCCCCchH
Q 019697 144 EVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTN 223 (337)
Q Consensus 144 ~~~iaIvt~GG~apGmNavIr~lv~~l~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~V~~~~~~GGS~LGTsR~~~d~~ 223 (337)
..+||++...-..|-...++.++-+.+.+ ++ .++.- .-+....+...
T Consensus 7 ~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~-~g-~~~~~-------------------------------~~~~~~~~~~~ 53 (289)
T 1dbq_A 7 TKSIGLLATSSEAAYFAEIIEAVEKNCFQ-KG-YTLIL-------------------------------GNAWNNLEKQR 53 (289)
T ss_dssp -CEEEEEESCTTSHHHHHHHHHHHHHHHH-HT-CEEEE-------------------------------EECTTCHHHHH
T ss_pred CCEEEEEeCCCCChHHHHHHHHHHHHHHH-cC-CeEEE-------------------------------EcCCCChHHHH
Confidence 45899998766667677777787777653 22 12210 00000112234
Q ss_pred HHHHHHHHhCCCEEEEEcCCcc
Q 019697 224 KIVDNIEDRGINQVYIIGGDGT 245 (337)
Q Consensus 224 ~iv~~L~~~~Id~LviIGGdgs 245 (337)
+.++.+...++|++++.+.+.+
T Consensus 54 ~~~~~l~~~~vdgii~~~~~~~ 75 (289)
T 1dbq_A 54 AYLSMMAQKRVDGLLVMCSEYP 75 (289)
T ss_dssp HHHHHHHHTTCSEEEEECSCCC
T ss_pred HHHHHHHhCCCCEEEEEeccCC
Confidence 5678888899999999988764
No 97
>3ihk_A Thiamin pyrophosphokinase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, SMR83; HET: TPP; 3.00A {Streptococcus mutans}
Probab=40.57 E-value=48 Score=29.49 Aligned_cols=86 Identities=17% Similarity=0.222 Sum_probs=55.1
Q ss_pred EEEEccCCCCchhhHHHHHHHHHHhhhcCCcEEEEEccccccccC---------CCeeeCChhhHhchhccCCcceeccC
Q 019697 147 ACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYS---------KNTLTLSPKVVNDIHKRGGTILRTSR 217 (337)
Q Consensus 147 iaIvt~GG~apGmNavIr~lv~~l~~~~~~~~v~Gi~~G~~GL~~---------~~~~~L~~~~V~~~~~~GGS~LGTsR 217 (337)
-+++.+||+.+-.- .. ...++|+-.|..=|++ +++--++++..+.+...|=.++--..
T Consensus 3 ~~~I~~gG~~~~~~-----------~~--~~~~i~~DgGa~~l~~~g~~Pd~ivGDfDSi~~~~~~~~~~~~~~i~~~~~ 69 (218)
T 3ihk_A 3 KVALFSGGDLTYFT-----------RD--FDYFVGIDKGSSFLLKNQLPLDLAIGDFDSVSAEEFKQIKAKAKKLVMAPA 69 (218)
T ss_dssp EEEEECSSCCSCCC-----------CC--CSEEEEETHHHHHHHHTTCCCSEEEECCTTSCHHHHHHHHTTCSSEEECCS
T ss_pred EEEEEECCCCccCc-----------cc--CCEEEEEcHHHHHHHHcCCCCCEEEeCcccCCHHHHHHHHhcCCeEEECCC
Confidence 35666788766311 11 2468888888776654 34444566666556555433443233
Q ss_pred C--CCchHHHHHHHHHh-CCCEEEEEcCCcc
Q 019697 218 G--GHDTNKIVDNIEDR-GINQVYIIGGDGT 245 (337)
Q Consensus 218 ~--~~d~~~iv~~L~~~-~Id~LviIGGdgs 245 (337)
. .-|++++++.+.++ +.+-++++|+.|.
T Consensus 70 eKD~TD~e~Al~~a~~~~~~~~I~i~Ga~GG 100 (218)
T 3ihk_A 70 EKNDTDTELALKTIFDCFGRVEIIVFGAFGG 100 (218)
T ss_dssp SCSSCHHHHHHHHHHHHTSSCEEEEESCSSS
T ss_pred CCCCCHHHHHHHHHHHhCCCCEEEEECCCCC
Confidence 3 24789999988887 7999999999998
No 98
>1sg6_A Pentafunctional AROM polypeptide; shikimate pathway, aromatic amino acid biosynthesis, DHQS, O form J, domain movement, cyclase, lyase; HET: NAD; 1.70A {Emericella nidulans} SCOP: e.22.1.1 PDB: 1nr5_A* 1nrx_A* 1nua_A 1nva_A* 1nvb_A* 1nvd_A* 1nve_A* 1nvf_A* 1dqs_A*
Probab=40.20 E-value=27 Score=33.63 Aligned_cols=50 Identities=20% Similarity=0.292 Sum_probs=39.8
Q ss_pred CchHHHHHHHHHhC--C---CEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeeccc
Q 019697 220 HDTNKIVDNIEDRG--I---NQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTI 272 (337)
Q Consensus 220 ~d~~~iv~~L~~~~--I---d~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTI 272 (337)
+..+++++.+.+.+ + |.++-+||--.+..|..++-.. .++ +++|.||-|.
T Consensus 87 ~~v~~~~~~~~~~~~~~~r~d~iIalGGGsv~D~ak~~Aa~~-~rg--ip~i~IPTTl 141 (393)
T 1sg6_A 87 QTKADIEDWMLSQNPPCGRDTVVIALGGGVIGDLTGFVASTY-MRG--VRYVQVPTTL 141 (393)
T ss_dssp HHHHHHHHHHHTSSSCCCTTCEEEEEESHHHHHHHHHHHHHG-GGC--CEEEEEECSH
T ss_pred HHHHHHHHHHHHcCCCCCCCCEEEEECCcHHHHHHHHHHHHh-cCC--CCEEEECCch
Confidence 35789999999999 9 9999999988888777766432 234 6799999984
No 99
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=39.38 E-value=2.2e+02 Score=25.71 Aligned_cols=86 Identities=10% Similarity=0.167 Sum_probs=47.3
Q ss_pred CeeEEEEccCCCCchhhHHHHHHHHHHhhhcCCcEEEEEccccccccCCCeeeCChhhHhchhccCCcceeccCC-CCch
Q 019697 144 EVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRG-GHDT 222 (337)
Q Consensus 144 ~~~iaIvt~GG~apGmNavIr~lv~~l~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~V~~~~~~GGS~LGTsR~-~~d~ 222 (337)
..+||++...-.-|-...++.++-+.+.+ ++ .+++ +..+.. .+..
T Consensus 66 s~~Igvi~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~--------------------------------~~~~~~~~~~~ 111 (348)
T 3bil_A 66 SNTIGVIVPSLINHYFAAMVTEIQSTASK-AG-LATI--------------------------------ITNSNEDATTM 111 (348)
T ss_dssp --CEEEEESCSSSHHHHHHHHHHHHHHHH-TT-CCEE--------------------------------EEECTTCHHHH
T ss_pred CCEEEEEeCCCCCcHHHHHHHHHHHHHHH-cC-CEEE--------------------------------EEeCCCCHHHH
Confidence 34799998655556666677777766653 22 1111 101111 1123
Q ss_pred HHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEee
Q 019697 223 NKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIP 269 (337)
Q Consensus 223 ~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIP 269 (337)
.+.++.|...++|++++.+.+..- ...+.+.+.+ +++|.+=
T Consensus 112 ~~~~~~l~~~~vdgiI~~~~~~~~----~~~~~l~~~~--iPvV~i~ 152 (348)
T 3bil_A 112 SGSLEFLTSHGVDGIICVPNEECA----NQLEDLQKQG--MPVVLVD 152 (348)
T ss_dssp HHHHHHHHHTTCSCEEECCCGGGH----HHHHHHHHC---CCEEEES
T ss_pred HHHHHHHHhCCCCEEEEeCCCCCh----HHHHHHHhCC--CCEEEEc
Confidence 456778888999999998876552 2223344444 5566553
No 100
>1usg_A Leucine-specific binding protein; leucine-binding protein, X-RAY crystallography, protein structure, ABC transport systems, transport protein; 1.53A {Escherichia coli} SCOP: c.93.1.1 PDB: 1usi_A* 1usk_A 2lbp_A 1z15_A 1z16_A 1z17_A 1z18_A 2liv_A
Probab=39.35 E-value=1.2e+02 Score=26.72 Aligned_cols=63 Identities=14% Similarity=0.257 Sum_probs=40.8
Q ss_pred hhccCCcceecc---CCCCchHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeec
Q 019697 205 IHKRGGTILRTS---RGGHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPK 270 (337)
Q Consensus 205 ~~~~GGS~LGTs---R~~~d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPk 270 (337)
+...|+.+.... .+..++...++.|++.+.+++|+.+.+. .+..+.+.+++.|+++++++...
T Consensus 162 l~~~g~~v~~~~~~~~~~~d~~~~~~~l~~~~~d~i~~~~~~~---~a~~~~~~~~~~g~~~~~~~~~~ 227 (346)
T 1usg_A 162 LKAANANVVFFDGITAGEKDFSALIARLKKENIDFVYYGGYYP---EMGQMLRQARSVGLKTQFMGPEG 227 (346)
T ss_dssp HHHTTCCEEEEEECCTTCCCCHHHHHHHHHTTCCEEEEESCHH---HHHHHHHHHHHTTCCCEEEECGG
T ss_pred HHHcCCEEEEEeccCCCCcCHHHHHHHHHhcCCCEEEEcCcch---HHHHHHHHHHHcCCCCeEEecCC
Confidence 345566655432 2235677888888888999988876322 23445566677788888887543
No 101
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=39.16 E-value=1.4e+02 Score=25.78 Aligned_cols=141 Identities=13% Similarity=0.006 Sum_probs=74.8
Q ss_pred CCeeEEEEccCC-CCchhhHHHHHHHHHHhhhcCCcEEEEEccccccccCCCeeeCChhhHhchhccCCcceeccCC-CC
Q 019697 143 DEVRACIVTCGG-LCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRG-GH 220 (337)
Q Consensus 143 ~~~~iaIvt~GG-~apGmNavIr~lv~~l~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~V~~~~~~GGS~LGTsR~-~~ 220 (337)
+..+||++...- .-|-...++.++.+.+.+. ++..+.-.. ...... ..
T Consensus 7 ~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~-~g~~~~~~~-----------------------------~~~~~~~~~ 56 (304)
T 3gbv_A 7 KKYTFACLLPKHLEGEYWTDVQKGIREAVTTY-SDFNISANI-----------------------------THYDPYDYN 56 (304)
T ss_dssp CCEEEEEEEECCCTTSHHHHHHHHHHHHHHHT-GGGCEEEEE-----------------------------EEECSSCHH
T ss_pred CcceEEEEecCCCCchHHHHHHHHHHHHHHHH-HhCCeEEEE-----------------------------EcCCCCCHH
Confidence 456899998776 7788888888888877642 011121100 000010 12
Q ss_pred chHHHHHHHHHhCCCEEEEEcCCcc-HHHHHHHHHHHHHcCCceeEEEeeccccCCcccc--CcccCchh--HHHHHHHH
Q 019697 221 DTNKIVDNIEDRGINQVYIIGGDGT-QKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVI--DKSFGFDT--AVEEAQRA 295 (337)
Q Consensus 221 d~~~iv~~L~~~~Id~LviIGGdgs-~~~a~~L~e~~~~~~~~i~VVgIPkTIDNDI~gt--D~S~GfdT--Av~~~~~~ 295 (337)
...+.++.+...++|++++.+-+.. ... +.+.+.+.+ ++||.+ |++++.. ..++++|- +...+++
T Consensus 57 ~~~~~i~~l~~~~vdgiii~~~~~~~~~~---~~~~~~~~~--iPvV~~----~~~~~~~~~~~~V~~D~~~~g~~a~~- 126 (304)
T 3gbv_A 57 SFVATSQAVIEEQPDGVMFAPTVPQYTKG---FTDALNELG--IPYIYI----DSQIKDAPPLAFFGQNSHQSGYFAAR- 126 (304)
T ss_dssp HHHHHHHHHHTTCCSEEEECCSSGGGTHH---HHHHHHHHT--CCEEEE----SSCCTTSCCSEEEECCHHHHHHHHHH-
T ss_pred HHHHHHHHHHhcCCCEEEECCCChHHHHH---HHHHHHHCC--CeEEEE----eCCCCCCCceEEEecChHHHHHHHHH-
Confidence 2356678888899999999988754 222 223333445 556654 4444332 23455542 3333333
Q ss_pred HHHHHHhhhcCCCeEEEEEe-----------cCCCccHHHHH
Q 019697 296 INAAHVEVESVENGVGIVKL-----------MGRYSGFISMY 326 (337)
Q Consensus 296 i~~i~~~A~S~~~rV~iVEv-----------MGR~sG~LA~~ 326 (337)
.+...... +++|.++-. .-|..||....
T Consensus 127 --~l~~~g~~-~~~i~~i~~~~~g~~~~~~~~~R~~gf~~~l 165 (304)
T 3gbv_A 127 --MLMLLAVN-DREIVIFRKIHEGVIGSNQQESREIGFRQYM 165 (304)
T ss_dssp --HHHHHSTT-CSEEEEEEEEBTTBCCCHHHHHHHHHHHHHH
T ss_pred --HHHHHhCC-CCeEEEEEecccCCccchhHHHHHHHHHHHH
Confidence 22222111 256887752 23556666544
No 102
>2qip_A Protein of unknown function VPA0982; APC85975, vibrio parahaemolyticus RIMD 2210633, STR genomics, PSI-2, protein structure initiative; 1.48A {Vibrio parahaemolyticus}
Probab=38.92 E-value=53 Score=27.47 Aligned_cols=50 Identities=26% Similarity=0.506 Sum_probs=35.7
Q ss_pred CchHHHHHHHH-HhCCCEEEEEcCCccHHHHHHHHHHHHHc-CCceeEEEeeccc
Q 019697 220 HDTNKIVDNIE-DRGINQVYIIGGDGTQKGAALIYKEVEKR-GLQVAVAGIPKTI 272 (337)
Q Consensus 220 ~d~~~iv~~L~-~~~Id~LviIGGdgs~~~a~~L~e~~~~~-~~~i~VVgIPkTI 272 (337)
-|..-+++.++ ...+|.++++-||+=+.-+. +.++++ |.++-++|.|+..
T Consensus 94 ~Dv~laiD~~~~a~~~d~~vLvSgD~DF~plv---~~lr~~~G~~V~v~g~~~~~ 145 (165)
T 2qip_A 94 WDVGITLDAIEIAPDVDRVILVSGDGDFSLLV---ERIQQRYNKKVTVYGVPRLT 145 (165)
T ss_dssp CHHHHHHHHHHHGGGCSEEEEECCCGGGHHHH---HHHHHHHCCEEEEEECGGGS
T ss_pred ccHHHHHHHHHhhccCCEEEEEECChhHHHHH---HHHHHHcCcEEEEEeCCCcC
Confidence 46655655553 25799999999999887654 445554 8888888887643
No 103
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=37.43 E-value=2e+02 Score=24.83 Aligned_cols=85 Identities=12% Similarity=0.055 Sum_probs=49.3
Q ss_pred CeeEEEEccCCCCchhhHHHHHHHHHHhhhcCCcEEEEEccccccccCCCeeeCChhhHhchhccCCcceeccCC-CCch
Q 019697 144 EVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRG-GHDT 222 (337)
Q Consensus 144 ~~~iaIvt~GG~apGmNavIr~lv~~l~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~V~~~~~~GGS~LGTsR~-~~d~ 222 (337)
..+||++...-.-|=...++.++.+.+.+ ++ .++. +..... .+..
T Consensus 8 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~--------------------------------~~~~~~~~~~~ 53 (290)
T 2rgy_A 8 LGIIGLFVPTFFGSYYGTILKQTDLELRA-VH-RHVV--------------------------------VATGCGESTPR 53 (290)
T ss_dssp CCEEEEECSCSCSHHHHHHHHHHHHHHHH-TT-CEEE--------------------------------EECCCSSSCHH
T ss_pred CCeEEEEeCCCCCchHHHHHHHHHHHHHH-CC-CEEE--------------------------------EEeCCCchhhh
Confidence 45899998665556666777777777653 22 2221 001111 1223
Q ss_pred HH---HHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEe
Q 019697 223 NK---IVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI 268 (337)
Q Consensus 223 ~~---iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgI 268 (337)
.+ .++.+...++|++++.+.+.+.. ..+.+.+.+ +++|.+
T Consensus 54 ~~~~~~~~~l~~~~vdgiIi~~~~~~~~----~~~~l~~~~--iPvV~~ 96 (290)
T 2rgy_A 54 EQALEAVRFLIGRDCDGVVVISHDLHDE----DLDELHRMH--PKMVFL 96 (290)
T ss_dssp HHHHHHHHHHHHTTCSEEEECCSSSCHH----HHHHHHHHC--SSEEEE
T ss_pred hhHHHHHHHHHhcCccEEEEecCCCCHH----HHHHHhhcC--CCEEEE
Confidence 44 77888889999999998776522 223333345 456655
No 104
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=36.64 E-value=64 Score=28.00 Aligned_cols=119 Identities=12% Similarity=0.013 Sum_probs=66.8
Q ss_pred CCeeEEEEccCCCCchhhHHHHHHHHHHhhhcCCcE-EEEEccccccccCCCeeeCChhhHhchhccCCcceeccCC-CC
Q 019697 143 DEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDE-ILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRG-GH 220 (337)
Q Consensus 143 ~~~~iaIvt~GG~apGmNavIr~lv~~l~~~~~~~~-v~Gi~~G~~GL~~~~~~~L~~~~V~~~~~~GGS~LGTsR~-~~ 220 (337)
+..+||++...-.-|-...++.++-+.+.+ ++ .+ ++ +..+.. .+
T Consensus 9 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~~--------------------------------~~~~~~~~~ 54 (277)
T 3hs3_A 9 KSKMIGIIIPDLNNRFYAQIIDGIQEVIQK-EG-YTALI--------------------------------SFSTNSDVK 54 (277)
T ss_dssp CCCEEEEEESCTTSHHHHHHHHHHHHHHHH-TT-CEEEE--------------------------------EECSSCCHH
T ss_pred CCCEEEEEeCCCCChhHHHHHHHHHHHHHH-CC-CCEEE--------------------------------EEeCCCChH
Confidence 345899999776677777788888777754 22 23 22 111111 12
Q ss_pred chHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeeccccCC-ccccCcccCchhHHHHHHHHHHHH
Q 019697 221 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDND-IAVIDKSFGFDTAVEEAQRAINAA 299 (337)
Q Consensus 221 d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTIDND-I~gtD~S~GfdTAv~~~~~~i~~i 299 (337)
...+.++.+...++|++++.+ .. + +.+. ...+++|.+ |++ ++..+.++++|-. .....+.+.+
T Consensus 55 ~~~~~~~~l~~~~vdgiIi~~--~~------~-~~~~--~~~iPvV~~----~~~~~~~~~~~V~~D~~-~~g~~a~~~L 118 (277)
T 3hs3_A 55 KYQNAIINFENNNVDGIITSA--FT------I-PPNF--HLNTPLVMY----DSANINDDIVRIVSNNT-KGGKESIKLL 118 (277)
T ss_dssp HHHHHHHHHHHTTCSEEEEEC--CC------C-CTTC--CCSSCEEEE----SCCCCCSSSEEEEECHH-HHHHHHHHTS
T ss_pred HHHHHHHHHHhCCCCEEEEcc--hH------H-HHHH--hCCCCEEEE----cccccCCCCEEEEEChH-HHHHHHHHHH
Confidence 245678888999999999998 11 1 1122 234667644 555 4432226666532 2223344444
Q ss_pred HHhhhcCCCeEEEEEe
Q 019697 300 HVEVESVENGVGIVKL 315 (337)
Q Consensus 300 ~~~A~S~~~rV~iVEv 315 (337)
. .++ ++|.++--
T Consensus 119 ~---~G~-~~I~~i~~ 130 (277)
T 3hs3_A 119 S---KKI-EKVLIQHW 130 (277)
T ss_dssp C---TTC-CEEEEEES
T ss_pred H---hCC-CEEEEEeC
Confidence 3 454 56777743
No 105
>3lmz_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS isomerase; HET: MSE CIT PGE; 1.44A {Parabacteroides distasonis}
Probab=36.48 E-value=1.5e+02 Score=25.62 Aligned_cols=15 Identities=7% Similarity=0.102 Sum_probs=8.7
Q ss_pred hHHHHHHHHHhCCCE
Q 019697 222 TNKIVDNIEDRGINQ 236 (337)
Q Consensus 222 ~~~iv~~L~~~~Id~ 236 (337)
.+++.+.++++++..
T Consensus 63 ~~~~~~~l~~~gl~i 77 (257)
T 3lmz_A 63 IRAFHDKCAAHKVTG 77 (257)
T ss_dssp HHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHcCCeE
Confidence 455666666666653
No 106
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=36.37 E-value=95 Score=27.11 Aligned_cols=69 Identities=16% Similarity=0.035 Sum_probs=43.6
Q ss_pred CeeEEEEccCCCCchhh-HHHHHHHHHHhhhcCCcEEEEEccccccccCCCeeeCChhhHhchhccCCcceeccCCCCch
Q 019697 144 EVRACIVTCGGLCPGIN-TVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDT 222 (337)
Q Consensus 144 ~~~iaIvt~GG~apGmN-avIr~lv~~l~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~V~~~~~~GGS~LGTsR~~~d~ 222 (337)
..+||++...-.-|-.. .++.++.+.+.+ ++ .++.-+ -+....+..
T Consensus 13 s~~Igvi~~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~~~-------------------------------~~~~~~~~~ 59 (301)
T 3miz_A 13 SNTFGIITDYVSTTPYSVDIVRGIQDWANA-NG-KTILIA-------------------------------NTGGSSERE 59 (301)
T ss_dssp CCEEEEEESSTTTCCSCHHHHHHHHHHHHH-TT-CEEEEE-------------------------------ECTTCHHHH
T ss_pred CCEEEEEeCCCcCcccHHHHHHHHHHHHHH-CC-CEEEEE-------------------------------eCCCChHHH
Confidence 35788888765556677 788888777754 22 233211 010111234
Q ss_pred HHHHHHHHHhCCCEEEEEcCCcc
Q 019697 223 NKIVDNIEDRGINQVYIIGGDGT 245 (337)
Q Consensus 223 ~~iv~~L~~~~Id~LviIGGdgs 245 (337)
.+.++.|...++|++++.+.+..
T Consensus 60 ~~~~~~l~~~~vdGiIi~~~~~~ 82 (301)
T 3miz_A 60 VEIWKMFQSHRIDGVLYVTMYRR 82 (301)
T ss_dssp HHHHHHHHHTTCSEEEEEEEEEE
T ss_pred HHHHHHHHhCCCCEEEEecCCcc
Confidence 56788888999999999987654
No 107
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=35.51 E-value=1.9e+02 Score=24.92 Aligned_cols=88 Identities=14% Similarity=0.074 Sum_probs=50.0
Q ss_pred eeEEEEccCCCCchhhHHHHHHHHHHhhhcCCcEEEEEccccccccCCCeeeCChhhHhchhccCCcceeccCC-CCchH
Q 019697 145 VRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRG-GHDTN 223 (337)
Q Consensus 145 ~~iaIvt~GG~apGmNavIr~lv~~l~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~V~~~~~~GGS~LGTsR~-~~d~~ 223 (337)
.+||++...-.-|-...++.++.+.+.+ ++..++. +-.+.. .....
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~-~g~~~~~--------------------------------~~~~~~~~~~~~ 49 (309)
T 2fvy_A 3 TRIGVTIYKYDDNFMSVVRKAIEQDAKA-APDVQLL--------------------------------MNDSQNDQSKQN 49 (309)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHHHHT-CTTEEEE--------------------------------EEECTTCHHHHH
T ss_pred cEEEEEeccCCcHHHHHHHHHHHHHHHh-cCCeEEE--------------------------------EecCCCCHHHHH
Confidence 4789998765666677778887777753 2210111 111111 11234
Q ss_pred HHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEee
Q 019697 224 KIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIP 269 (337)
Q Consensus 224 ~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIP 269 (337)
+.++.+...++|++++.+.+.+.. ....+.+.+.+ ++||.+-
T Consensus 50 ~~~~~~~~~~vdgiii~~~~~~~~--~~~~~~~~~~~--iPvV~~~ 91 (309)
T 2fvy_A 50 DQIDVLLAKGVKALAINLVDPAAA--GTVIEKARGQN--VPVVFFN 91 (309)
T ss_dssp HHHHHHHHTTCSEEEECCSSGGGH--HHHHHHHHTTT--CCEEEES
T ss_pred HHHHHHHHcCCCEEEEeCCCcchh--HHHHHHHHHCC--CcEEEec
Confidence 567788889999999988776521 12223344434 5677553
No 108
>3jtw_A Dihydrofolate reductase; YP_805003.1, structural GE joint center for structural genomics, JCSG, protein structu initiative; 1.90A {Pediococcus pentosaceus atcc 25745}
Probab=35.32 E-value=13 Score=31.57 Aligned_cols=47 Identities=17% Similarity=0.307 Sum_probs=35.9
Q ss_pred CchHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCC--ceeEEEeecccc
Q 019697 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGL--QVAVAGIPKTID 273 (337)
Q Consensus 220 ~d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~--~i~VVgIPkTID 273 (337)
.+++++++.|++.+++-++++||-..+..+.+ .++ ++.+.-+|+.+-
T Consensus 96 ~~l~~~l~~l~~~~~~~i~v~GG~~l~~~~l~-------~~lvDel~l~~~p~~~G 144 (178)
T 3jtw_A 96 QSPVELVKRIQKEKGKDVWIVGGAKIIDPLVQ-------ANLIDTYILTTVPIFLG 144 (178)
T ss_dssp SCHHHHHHHHHTSSCCEEEEEECHHHHHHHHH-------TTCCSEEEEEEESCCCC
T ss_pred CCHHHHHHHHHhCCCCEEEEEChHHHHHHHHH-------CCCceEEEEEEecEEEc
Confidence 37899999999999999999999776655442 121 467788898873
No 109
>4evq_A Putative ABC transporter subunit, substrate-bindi component; structural genomics, PSI-biology, midwest center for structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas palustris} PDB: 4evr_A
Probab=34.55 E-value=84 Score=28.17 Aligned_cols=63 Identities=16% Similarity=0.209 Sum_probs=44.1
Q ss_pred chhccCCcceeccC---CCCchHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEee
Q 019697 204 DIHKRGGTILRTSR---GGHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIP 269 (337)
Q Consensus 204 ~~~~~GGS~LGTsR---~~~d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIP 269 (337)
.+...|+.+..... +..++...++.+++.+.+++|+.+.+. .+..+.+.+++.|+++++++..
T Consensus 174 ~l~~~G~~v~~~~~~~~~~~d~~~~~~~l~~~~~dai~~~~~~~---~a~~~~~~~~~~g~~vp~~~~~ 239 (375)
T 4evq_A 174 SFTAGKGEVVKDITIAFPDVEFQSALAEIASLKPDCVYAFFSGG---GALKFIKDYAAANLGIPLWGPG 239 (375)
T ss_dssp HHHHTTCEEEEEEEECTTCCCCHHHHHHHHHHCCSEEEEECCTH---HHHHHHHHHHHTTCCCCEEEEG
T ss_pred HHHHcCCeEEEEEecCCCCccHHHHHHHHHhcCCCEEEEecCcc---hHHHHHHHHHHcCCCceEEecC
Confidence 34556666544322 345788889999999999999876653 3445556677789999998864
No 110
>3kuu_A Phosphoribosylaminoimidazole carboxylase catalyti PURE; 3-layer (ABA) sandwich, rossmann fold, csgid, lyase, structu genomics; 1.41A {Yersinia pestis} SCOP: c.23.8.1 PDB: 1d7a_A* 1qcz_A 2ate_A* 2nsl_A* 2nsh_A* 2nsj_A*
Probab=34.45 E-value=49 Score=29.08 Aligned_cols=53 Identities=17% Similarity=0.264 Sum_probs=35.3
Q ss_pred ceeccCCCCchHHHHHHHHHhCCCEEEEEcC-CccHHHHHHHHHHHHHcCCceeEEEeecc
Q 019697 212 ILRTSRGGHDTNKIVDNIEDRGINQVYIIGG-DGTQKGAALIYKEVEKRGLQVAVAGIPKT 271 (337)
Q Consensus 212 ~LGTsR~~~d~~~iv~~L~~~~Id~LviIGG-dgs~~~a~~L~e~~~~~~~~i~VVgIPkT 271 (337)
+.+--|+.+.+.+++++.++.+++.++.+-| .+.+-++.. - ....||||||-.
T Consensus 46 V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~LpgvvA--~-----~t~~PVIgVP~~ 99 (174)
T 3kuu_A 46 VVSAHRTPDRLFSFAEQAEANGLHVIIAGNGGAAHLPGMLA--A-----KTLVPVLGVPVQ 99 (174)
T ss_dssp ECCTTTCHHHHHHHHHHTTTTTCSEEEEEEESSCCHHHHHH--H-----TCSSCEEEEEEC
T ss_pred EEcccCCHHHHHHHHHHHHhCCCcEEEEECChhhhhHHHHH--h-----ccCCCEEEeeCC
Confidence 3445577677888888888889997666644 444444322 1 356899999964
No 111
>3oow_A Phosphoribosylaminoimidazole carboxylase,catalyic; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.75A {Francisella tularensis subsp} SCOP: c.23.8.1 PDB: 3opq_A*
Probab=34.19 E-value=68 Score=27.99 Aligned_cols=54 Identities=15% Similarity=0.288 Sum_probs=35.7
Q ss_pred ceeccCCCCchHHHHHHHHHhCCCEEEEEcCCc-cHHHHHHHHHHHHHcCCceeEEEeeccc
Q 019697 212 ILRTSRGGHDTNKIVDNIEDRGINQVYIIGGDG-TQKGAALIYKEVEKRGLQVAVAGIPKTI 272 (337)
Q Consensus 212 ~LGTsR~~~d~~~iv~~L~~~~Id~LviIGGdg-s~~~a~~L~e~~~~~~~~i~VVgIPkTI 272 (337)
+.+--|+.+.+.+.++++++.+++.++.+-|-. .+-++.. - ....||||||-..
T Consensus 39 V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA--~-----~t~~PVIgVP~~~ 93 (166)
T 3oow_A 39 VVSAHRTPDKMFDYAETAKERGLKVIIAGAGGAAHLPGMVA--A-----KTTLPVLGVPVKS 93 (166)
T ss_dssp ECCTTTCHHHHHHHHHHTTTTTCCEEEEEECSSCCHHHHHH--H-----TCSSCEEEEECCC
T ss_pred EEcCcCCHHHHHHHHHHHHhCCCcEEEEECCcchhhHHHHH--h-----ccCCCEEEeecCc
Confidence 344456767777888888888898777665544 4444322 1 3568999999644
No 112
>3qbe_A 3-dehydroquinate synthase; shikimate pathway, mycobacte tuberculosis, nicotinamide adenine dinucleotide (NAD)-depen enzyme; 2.07A {Mycobacterium tuberculosis} PDB: 3qbd_A
Probab=33.97 E-value=44 Score=32.22 Aligned_cols=49 Identities=22% Similarity=0.351 Sum_probs=39.0
Q ss_pred chHHHHHHHHHhCC---CEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeeccc
Q 019697 221 DTNKIVDNIEDRGI---NQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTI 272 (337)
Q Consensus 221 d~~~iv~~L~~~~I---d~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTI 272 (337)
..+++++.+++.++ |.++-+||--.+..|..++... .++ +++|.||-|.
T Consensus 88 ~v~~~~~~l~~~~~~r~d~IIavGGGsv~D~ak~~Aa~~-~rg--ip~i~IPTTl 139 (368)
T 3qbe_A 88 VVGFIWEVLGRIGIGRKDALVSLGGGAATDVAGFAAATW-LRG--VSIVHLPTTL 139 (368)
T ss_dssp HHHHHHHHHHHHTCCTTCEEEEEESHHHHHHHHHHHHHG-GGC--CEEEEEECSH
T ss_pred HHHHHHHHHHHcCCCCCcEEEEECChHHHHHHHHHHHHh-ccC--CcEEEECCCC
Confidence 46888999998875 9999999988888887776432 234 7799999995
No 113
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=33.93 E-value=2.1e+02 Score=24.06 Aligned_cols=90 Identities=10% Similarity=0.001 Sum_probs=52.2
Q ss_pred eeEEEEccCCCCchhhHHHHHHHHHHhhhcCCcEEEEEccccccccCCCeeeCChhhHhchhccCCcceeccCCCCchHH
Q 019697 145 VRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTNK 224 (337)
Q Consensus 145 ~~iaIvt~GG~apGmNavIr~lv~~l~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~V~~~~~~GGS~LGTsR~~~d~~~ 224 (337)
+|||++...-.-|-...+++++.+.+.+ ++ .++.-+ . ..+....+...+
T Consensus 1 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~-~g-~~~~~~---------------~--------------~~~~~~~~~~~~ 49 (276)
T 3ksm_A 1 PKLLLVLKGDSNAYWRQVYLGAQKAADE-AG-VTLLHR---------------S--------------TKDDGDIAGQIQ 49 (276)
T ss_dssp CEEEEECSCSSSTHHHHHHHHHHHHHHH-HT-CEEEEC---------------C--------------CSSTTCHHHHHH
T ss_pred CeEEEEeCCCCChHHHHHHHHHHHHHHH-cC-CEEEEE---------------C--------------CCCCCCHHHHHH
Confidence 4899999887888888889998887764 22 222100 0 000011122345
Q ss_pred HHHHHHHhC-CCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEee
Q 019697 225 IVDNIEDRG-INQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIP 269 (337)
Q Consensus 225 iv~~L~~~~-Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIP 269 (337)
.++.+.+.+ +|++++.+-+.... ....+.+.+.+ +++|.+-
T Consensus 50 ~i~~l~~~~~vdgii~~~~~~~~~--~~~~~~~~~~~--ipvV~~~ 91 (276)
T 3ksm_A 50 ILSYHLSQAPPDALILAPNSAEDL--TPSVAQYRARN--IPVLVVD 91 (276)
T ss_dssp HHHHHHHHSCCSEEEECCSSTTTT--HHHHHHHHHTT--CCEEEES
T ss_pred HHHHHHHhCCCCEEEEeCCCHHHH--HHHHHHHHHCC--CcEEEEe
Confidence 677888888 99999998653221 11223334444 5677653
No 114
>3eaf_A ABC transporter, substrate binding protein; PSI2, NYSGXRC, substrate binding P structural genomics, protein structure initiative; 2.00A {Aeropyrum pernix}
Probab=33.87 E-value=1.8e+02 Score=26.37 Aligned_cols=111 Identities=10% Similarity=0.000 Sum_probs=62.8
Q ss_pred CchhhHHHHHHHHHHhhhcCCcEEEEEccccccccCCCe-eeCChhhHhchhccCCcceeccC---CCCchHHHHHH--H
Q 019697 156 CPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNT-LTLSPKVVNDIHKRGGTILRTSR---GGHDTNKIVDN--I 229 (337)
Q Consensus 156 apGmNavIr~lv~~l~~~~~~~~v~Gi~~G~~GL~~~~~-~~L~~~~V~~~~~~GGS~LGTsR---~~~d~~~iv~~--L 229 (337)
+|--+...+.+++++.+.++..+|.-+ .+- +..+ .++.....+.+...|+.+..... +..|+...+.. |
T Consensus 121 ~~~~~~~~~~~~~~l~~~~g~~~iaii-~~~----~~~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~~~d~~~~~~~~~l 195 (391)
T 3eaf_A 121 APDYSTQACSGLAFLASEFGQGKLALA-YDS----KVAYSRSPIGAIKKAAPSLGLQVVGDYDLPLRATEADAERIAREM 195 (391)
T ss_dssp SCCHHHHHHHHHHHHHHHHCSEEEEEE-ECT----TCHHHHTTHHHHHHHTGGGTEEEEEEEECCTTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhcCCCEEEEE-Eec----CChhHHHHHHHHHHHHHHcCCceeeeeccCCCCcCHHHHHHHHHH
Confidence 344455566667777553344444433 321 0111 11111223334556776655433 23578888888 9
Q ss_pred HHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeeccccC
Q 019697 230 EDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDN 274 (337)
Q Consensus 230 ~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTIDN 274 (337)
++.+.|++|+.+- + ..+..+.+.+++.|+++++++..-+.+.
T Consensus 196 ~~~~~dav~~~~~-~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 237 (391)
T 3eaf_A 196 LAADPDYVWCGNT-I--SSCSLLGRAMAKVGLDAFLLTNVWGFDE 237 (391)
T ss_dssp HTTCCSEEEECSC-H--HHHHHHHHHHHHHTCCCEEEECGGGCST
T ss_pred HHcCCCEEEEecC-c--HHHHHHHHHHHHCCCCceEEEeccCCCH
Confidence 9999998877543 2 2344566667778999999886554443
No 115
>3mel_A Thiamin pyrophosphokinase family protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium; HET: TPP; 2.79A {Enterococcus faecalis}
Probab=33.87 E-value=46 Score=29.77 Aligned_cols=90 Identities=19% Similarity=0.215 Sum_probs=56.7
Q ss_pred EEEEccCCCCchhhHHHHHHHHHHhhhcCCcEEEEEccccccccCC---------CeeeCChhhHhchhccCCcceeccC
Q 019697 147 ACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSK---------NTLTLSPKVVNDIHKRGGTILRTSR 217 (337)
Q Consensus 147 iaIvt~GG~apGmNavIr~lv~~l~~~~~~~~v~Gi~~G~~GL~~~---------~~~~L~~~~V~~~~~~GGS~LGTsR 217 (337)
-+++.+||+.+-... .+.+ ....++|+-.|..=|++. ++-.++++..+.+...|=.++--..
T Consensus 3 ~~~I~~gG~~~~~~~-------~~~~--~~~~~I~aDgGa~~l~~~g~~Pd~ivGDfDSi~~~~~~~~~~~~~~~~~~~~ 73 (222)
T 3mel_A 3 RVLLVAGGNPSDWPT-------IEPA--TYDYFVGIDRGCLHLLEADLPLQLAVGDFDSLSREEYHFVQETTETLIQAPA 73 (222)
T ss_dssp EEEEECSSCGGGCCC-------CCGG--GCSCEEEETTHHHHHHTTTCCCCEEEECCTTSCTTHHHHHHHHCSSEEECCS
T ss_pred EEEEEECCCCccchh-------HHhh--cCCEEEEEcHHHHHHHHCCCCCCEEEeCcccCCHHHHHHHHhcCCcEEECCc
Confidence 356667888763221 0111 224688998888777652 3434555666656655433332122
Q ss_pred C--CCchHHHHHHHHHhCCC-EEEEEcCCcc
Q 019697 218 G--GHDTNKIVDNIEDRGIN-QVYIIGGDGT 245 (337)
Q Consensus 218 ~--~~d~~~iv~~L~~~~Id-~LviIGGdgs 245 (337)
. ..|++++++.+.+++-+ -++++|+.|.
T Consensus 74 eKD~TD~e~Al~~~~~~~~~~~I~i~Ga~Gg 104 (222)
T 3mel_A 74 EKDDTDTQLALQEALQRFPQAEMTIIGATGG 104 (222)
T ss_dssp SCSSCHHHHHHHHHHHHCTTSEEEEECCCSS
T ss_pred cCCCCHHHHHHHHHHHhCCCceEEEEccCCC
Confidence 2 34788999999999987 9999999997
No 116
>4b4k_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase; 2.50A {Bacillus anthracis}
Probab=33.75 E-value=27 Score=30.94 Aligned_cols=10 Identities=30% Similarity=0.657 Sum_probs=8.3
Q ss_pred CceeEEEeec
Q 019697 261 LQVAVAGIPK 270 (337)
Q Consensus 261 ~~i~VVgIPk 270 (337)
...||||||-
T Consensus 99 T~~PVIGVPv 108 (181)
T 4b4k_A 99 TNLPVIGVPV 108 (181)
T ss_dssp CCSCEEEEEC
T ss_pred CCCCEEEEec
Confidence 4678999996
No 117
>2gd9_A Hypothetical protein YYAP; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, oxidoreductase; 2.30A {Bacillus subtilis}
Probab=33.51 E-value=17 Score=30.94 Aligned_cols=48 Identities=8% Similarity=0.182 Sum_probs=36.2
Q ss_pred CchHHHHHHHHHhCCCEEEEEcCCccHHHHHH--HHHHHHHcCCceeEEEeeccccC
Q 019697 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAAL--IYKEVEKRGLQVAVAGIPKTIDN 274 (337)
Q Consensus 220 ~d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~--L~e~~~~~~~~i~VVgIPkTIDN 274 (337)
.+++++++.|++.+++-++++||-..+..... |.+ ++.+..+|+.+..
T Consensus 105 ~~l~~~l~~L~~~~~~~i~v~GG~~l~~~~l~~glvD-------el~l~~~P~~lG~ 154 (189)
T 2gd9_A 105 DNILEEVNKLKKNPGKDIWLYGGASLITTFINLGLVD-------EFRLSIHPVVLGE 154 (189)
T ss_dssp HHHHHHHHHHHHSCCSEEEEEECHHHHHHHHHTTCCC-------EEEEEECSEECSS
T ss_pred CCHHHHHHHHHhCCCCeEEEEChHHHHHHHHHCCCce-------EEEEEEeCEEeCC
Confidence 37889999999999999999999766655443 222 4667888988753
No 118
>3lp8_A Phosphoribosylamine-glycine ligase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.15A {Ehrlichia chaffeensis}
Probab=33.38 E-value=2.6e+02 Score=26.83 Aligned_cols=72 Identities=11% Similarity=0.194 Sum_probs=38.4
Q ss_pred cCCCCeeEEEEccCCCCchhhHHHHHHHHHHhhhcCCcEEEEEccccccccCCC-eeeCChhhHhchhccCCcceeccCC
Q 019697 140 FKSDEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKN-TLTLSPKVVNDIHKRGGTILRTSRG 218 (337)
Q Consensus 140 f~~~~~~iaIvt~GG~apGmNavIr~lv~~l~~~~~~~~v~Gi~~G~~GL~~~~-~~~L~~~~V~~~~~~GGS~LGTsR~ 218 (337)
..|..+||.|+-+|| --++..+ .+.+..+..++|.. .|-.|..... .+.+ .
T Consensus 17 ~~p~~m~ilvlG~gg---re~ala~----~l~~s~~v~~v~~~-pgn~g~~~~~~~~~i--------------------~ 68 (442)
T 3lp8_A 17 QGPGSMNVLVIGSGG---REHSMLH----HIRKSTLLNKLFIA-PGREGMSGLADIIDI--------------------D 68 (442)
T ss_dssp ---CCEEEEEEECSH---HHHHHHH----HHTTCTTEEEEEEE-ECCGGGTTTSEECCC--------------------C
T ss_pred CCCCCCEEEEECCCh---HHHHHHH----HHHhCCCCCEEEEE-CCChHHhhccceeec--------------------C
Confidence 357779999998873 2233333 34443344566654 4445543221 1111 2
Q ss_pred CCchHHHHHHHHHhCCCEEEE
Q 019697 219 GHDTNKIVDNIEDRGINQVYI 239 (337)
Q Consensus 219 ~~d~~~iv~~L~~~~Id~Lvi 239 (337)
..|.+.+++.++++++|.+++
T Consensus 69 ~~d~~~l~~~a~~~~id~vv~ 89 (442)
T 3lp8_A 69 INSTIEVIQVCKKEKIELVVI 89 (442)
T ss_dssp TTCHHHHHHHHHHTTCCEEEE
T ss_pred cCCHHHHHHHHHHhCCCEEEE
Confidence 346677777777777776554
No 119
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=33.37 E-value=1.9e+02 Score=25.06 Aligned_cols=68 Identities=9% Similarity=0.037 Sum_probs=41.2
Q ss_pred CeeEEEEccCCCCchhhHHHHHHHHHHhhhcCCcEEEEEccccccccCCCeeeCChhhHhchhccCCcceeccCCCCchH
Q 019697 144 EVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTN 223 (337)
Q Consensus 144 ~~~iaIvt~GG~apGmNavIr~lv~~l~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~V~~~~~~GGS~LGTsR~~~d~~ 223 (337)
..+||++. .-.-|-...++.++.+.+.+ ++ .++.-+ ......+..
T Consensus 12 ~~~Igvi~-~~~~~~~~~~~~gi~~~a~~-~g-~~~~~~--------------------------------~~~~~~~~~ 56 (289)
T 3k9c_A 12 SRLLGVVF-ELQQPFHGDLVEQIYAAATR-RG-YDVMLS--------------------------------AVAPSRAEK 56 (289)
T ss_dssp -CEEEEEE-ETTCHHHHHHHHHHHHHHHH-TT-CEEEEE--------------------------------EEBTTBCHH
T ss_pred CCEEEEEE-ecCCchHHHHHHHHHHHHHH-CC-CEEEEE--------------------------------eCCCCHHHH
Confidence 45899998 66667777788888777754 22 233211 011111245
Q ss_pred HHHHHHHHhCCCEEEEEcCCccH
Q 019697 224 KIVDNIEDRGINQVYIIGGDGTQ 246 (337)
Q Consensus 224 ~iv~~L~~~~Id~LviIGGdgs~ 246 (337)
+.++.|...++|++++.+.+.+.
T Consensus 57 ~~~~~l~~~~vdgiIi~~~~~~~ 79 (289)
T 3k9c_A 57 VAVQALMRERCEAAILLGTRFDT 79 (289)
T ss_dssp HHHHHHTTTTEEEEEEETCCCCH
T ss_pred HHHHHHHhCCCCEEEEECCCCCH
Confidence 56677777788888888876654
No 120
>3lp6_A Phosphoribosylaminoimidazole carboxylase catalyti; alpha and beta protein, structural genomics, PSI-2, protein initiative; 1.70A {Mycobacterium tuberculosis} SCOP: c.23.8.0
Probab=33.35 E-value=46 Score=29.30 Aligned_cols=55 Identities=15% Similarity=0.271 Sum_probs=37.4
Q ss_pred ceeccCCCCchHHHHHHHHHhCCCEEEEEcCC-ccHHHHHHHHHHHHHcCCceeEEEeecccc
Q 019697 212 ILRTSRGGHDTNKIVDNIEDRGINQVYIIGGD-GTQKGAALIYKEVEKRGLQVAVAGIPKTID 273 (337)
Q Consensus 212 ~LGTsR~~~d~~~iv~~L~~~~Id~LviIGGd-gs~~~a~~L~e~~~~~~~~i~VVgIPkTID 273 (337)
+.+--|+.+.+.+++++.++.+++.++.+-|- +.+-++.. - ....||||||-...
T Consensus 41 V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~LpgvvA--~-----~t~~PVIgVP~~~~ 96 (174)
T 3lp6_A 41 VVSAHRTPEAMFSYARGAAARGLEVIIAGAGGAAHLPGMVA--A-----ATPLPVIGVPVPLG 96 (174)
T ss_dssp ECCTTTCHHHHHHHHHHHHHHTCCEEEEEEESSCCHHHHHH--H-----HCSSCEEEEEECCS
T ss_pred EECCCCCHHHHHHHHHHHHhCCCCEEEEecCchhhhHHHHH--h-----ccCCCEEEeeCCCC
Confidence 34456777788899999999999977666444 44444322 1 14678999996543
No 121
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=33.02 E-value=1.9e+02 Score=25.68 Aligned_cols=92 Identities=12% Similarity=0.002 Sum_probs=51.9
Q ss_pred CCeeEEEEccCCCCchhhHHHHHHHHHHhhhcCCcEEEEEccccccccCCCeeeCChhhHhchhccCCcceeccCC-CCc
Q 019697 143 DEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRG-GHD 221 (337)
Q Consensus 143 ~~~~iaIvt~GG~apGmNavIr~lv~~l~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~V~~~~~~GGS~LGTsR~-~~d 221 (337)
+..+||++...-.-|-...++.++.+.+.+ ++ .++. +-.+.. ...
T Consensus 4 ~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~-~g-~~l~--------------------------------~~~~~~~~~~ 49 (332)
T 2rjo_A 4 GQTTLACSFRSLTNPYYTAFNKGAQSFAKS-VG-LPYV--------------------------------PLTTEGSSEK 49 (332)
T ss_dssp CCCEEEEEESCTTSHHHHHHHHHHHHHHHH-HT-CCEE--------------------------------EEECTTCHHH
T ss_pred CccEEEEEecCCCcHHHHHHHHHHHHHHHH-cC-CEEE--------------------------------EecCCCCHHH
Confidence 345899998766667677777887777653 12 1111 111111 112
Q ss_pred hHHHHHHHHHhC--CCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeeccc
Q 019697 222 TNKIVDNIEDRG--INQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTI 272 (337)
Q Consensus 222 ~~~iv~~L~~~~--Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTI 272 (337)
..+.++.+...+ +|++++.+.+... ...+.+.+.+.+ +++|.+-...
T Consensus 50 ~~~~i~~l~~~~~~vdgiIi~~~~~~~--~~~~~~~~~~~~--iPvV~~~~~~ 98 (332)
T 2rjo_A 50 GIADIRALLQKTGGNLVLNVDPNDSAD--ARVIVEACSKAG--AYVTTIWNKP 98 (332)
T ss_dssp HHHHHHHHHHHTTTCEEEEECCSSHHH--HHHHHHHHHHHT--CEEEEESCCC
T ss_pred HHHHHHHHHHCCCCCCEEEEeCCCHHH--HHHHHHHHHHCC--CeEEEECCCC
Confidence 345677777888 9999998876532 112233344444 5677654433
No 122
>3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Vibrio fischeri}
Probab=32.81 E-value=67 Score=25.19 Aligned_cols=46 Identities=20% Similarity=0.238 Sum_probs=34.3
Q ss_pred HHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeec
Q 019697 223 NKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPK 270 (337)
Q Consensus 223 ~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPk 270 (337)
+.+.+.+++++++.+++--+..+......+.+.+++.+++ +..+|.
T Consensus 55 ~~l~~~~~~~~id~viia~~~~~~~~~~~i~~~l~~~gv~--v~~vP~ 100 (141)
T 3nkl_A 55 KYLERLIKKHCISTVLLAVPSASQVQKKVIIESLAKLHVE--VLTIPN 100 (141)
T ss_dssp GGHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHTTTCE--EEECCC
T ss_pred HHHHHHHHHCCCCEEEEeCCCCCHHHHHHHHHHHHHcCCe--EEECCC
Confidence 3466677789999998877776666777888888877754 667774
No 123
>3uhf_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta sandwich fold, isomerase; HET: DGL; 1.83A {Campylobacter jejuni} PDB: 3uho_A* 3uhp_A
Probab=32.64 E-value=95 Score=28.63 Aligned_cols=102 Identities=18% Similarity=0.193 Sum_probs=54.2
Q ss_pred ccccccCCCCeeEEEEccCCCCchhhHHHHHHHHHHhhhcCCcEEEEEccccccccCCCeeeCChhhHhchhccCCccee
Q 019697 135 REKVYFKSDEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILR 214 (337)
Q Consensus 135 r~~~~f~~~~~~iaIvt~GG~apGmNavIr~lv~~l~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~V~~~~~~GGS~LG 214 (337)
...+|+.+....|||.=|| -.| -.|.+.+.+.+ +..+++-+-+--.- -|=+-+|+.+..
T Consensus 15 ~~~~~~~~~~~~IgvfDSG--vGG-Ltv~~~i~~~l----P~e~~iy~~D~a~~----PYG~ks~e~i~~---------- 73 (274)
T 3uhf_A 15 TENLYFQSNAMKIGVFDSG--VGG-LSVLKSLYEAR----LFDEIIYYGDTARV----PYGVKDKDTIIK---------- 73 (274)
T ss_dssp --CCCCCCSCCEEEEEESS--STT-HHHHHHHHHTT----CCSEEEEEECTTTC----CCTTSCHHHHHH----------
T ss_pred cceeeccCCCCeEEEEECC--CCh-HHHHHHHHHHC----CCCCEEEEecCCCC----CCCCCCHHHHHH----------
Confidence 3567888888899999986 233 34777775543 55555433220000 010112222221
Q ss_pred ccCCCCchHHHHHHHHHhCCCEEEEEcCCccHHHHHHH-HHHHHHcCCceeEEEee
Q 019697 215 TSRGGHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALI-YKEVEKRGLQVAVAGIP 269 (337)
Q Consensus 215 TsR~~~d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L-~e~~~~~~~~i~VVgIP 269 (337)
-..++++.|++.+++.+++-.- +|... .+++++ .+++||+||-
T Consensus 74 ------~~~~~~~~L~~~g~d~IVIACN-----Ta~~~al~~lr~-~~~iPvigii 117 (274)
T 3uhf_A 74 ------FCLEALDFFEQFQIDMLIIACN-----TASAYALDALRA-KAHFPVYGVI 117 (274)
T ss_dssp ------HHHHHHHHHTTSCCSEEEECCH-----HHHHHSHHHHHH-HCSSCEECSH
T ss_pred ------HHHHHHHHHHHCCCCEEEEeCC-----ChhHHHHHHHHH-hcCCCEEcCC
Confidence 2356778888999998776542 22221 123322 2567888864
No 124
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A*
Probab=31.81 E-value=75 Score=28.43 Aligned_cols=63 Identities=19% Similarity=0.375 Sum_probs=43.0
Q ss_pred chhccCCcceeccC---CCCchHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCc---eeEEEee
Q 019697 204 DIHKRGGTILRTSR---GGHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQ---VAVAGIP 269 (337)
Q Consensus 204 ~~~~~GGS~LGTsR---~~~d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~---i~VVgIP 269 (337)
.+...|+.+..... +..|+...++.+++.+.+++++.+.+. .+..+.+.+++.|++ +++++-.
T Consensus 162 ~l~~~g~~v~~~~~~~~~~~d~~~~~~~l~~~~~d~v~~~~~~~---~a~~~~~~~~~~g~~~~~v~~~~~~ 230 (368)
T 4eyg_A 162 RFTAGGGEIVEEIKVPLANPDFAPFLQRMKDAKPDAMFVFVPAG---QGGNFMKQFAERGLDKSGIKVIGPG 230 (368)
T ss_dssp HHHHTTCEEEEEEEECSSSCCCHHHHHHHHHHCCSEEEEECCTT---CHHHHHHHHHHTTGGGTTCEEEEET
T ss_pred HHHHcCCEEEEEEeCCCCCCcHHHHHHHHHhcCCCEEEEeccch---HHHHHHHHHHHcCCCcCCceEEecC
Confidence 34556776655432 345788899999999999999977665 233444556667777 7788764
No 125
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=31.67 E-value=2.2e+02 Score=24.32 Aligned_cols=69 Identities=4% Similarity=-0.071 Sum_probs=42.1
Q ss_pred CCeeEEEEccCCC--CchhhHHHHHHHHHHhhhcCCcEEEEEccccccccCCCeeeCChhhHhchhccCCcceecc--CC
Q 019697 143 DEVRACIVTCGGL--CPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTS--RG 218 (337)
Q Consensus 143 ~~~~iaIvt~GG~--apGmNavIr~lv~~l~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~V~~~~~~GGS~LGTs--R~ 218 (337)
+..+||++...-. .|-...++.++.+.+.+. + .++. +-.. ..
T Consensus 4 ~~~~Ig~v~~~~~~~~~~~~~~~~gi~~~a~~~-g-~~~~--------------------------------~~~~~~~~ 49 (289)
T 3brs_A 4 KQYYMICIPKVLDDSSDFWSVLVEGAQMAAKEY-E-IKLE--------------------------------FMAPEKEE 49 (289)
T ss_dssp -CCEEEEECSCCCSSSHHHHHHHHHHHHHHHHH-T-CEEE--------------------------------ECCCSSTT
T ss_pred CCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHc-C-CEEE--------------------------------EecCCCCC
Confidence 3458999986555 677777888877777542 2 1211 1001 11
Q ss_pred -CCchHHHHHHHHHhCCCEEEEEcCCcc
Q 019697 219 -GHDTNKIVDNIEDRGINQVYIIGGDGT 245 (337)
Q Consensus 219 -~~d~~~iv~~L~~~~Id~LviIGGdgs 245 (337)
.....+.++.+...++|++++.+.+..
T Consensus 50 ~~~~~~~~~~~l~~~~vdgii~~~~~~~ 77 (289)
T 3brs_A 50 DYLVQNELIEEAIKRKPDVILLAAADYE 77 (289)
T ss_dssp CHHHHHHHHHHHHHTCCSEEEECCSCTT
T ss_pred CHHHHHHHHHHHHHhCCCEEEEeCCChH
Confidence 112346678888899999999887654
No 126
>1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} SCOP: c.55.3.8
Probab=31.15 E-value=40 Score=26.43 Aligned_cols=30 Identities=23% Similarity=0.338 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHcCCceeEEEeeccccCCc
Q 019697 247 KGAALIYKEVEKRGLQVAVAGIPKTIDNDI 276 (337)
Q Consensus 247 ~~a~~L~e~~~~~~~~i~VVgIPkTIDNDI 276 (337)
.....|.+.+++++...-|||+|++.|+..
T Consensus 38 ~~~~~l~~li~e~~v~~iVvGlP~~mdGt~ 67 (98)
T 1iv0_A 38 EDVEALLDFVRREGLGKLVVGLPLRTDLKE 67 (98)
T ss_dssp HHHHHHHHHHHHHTCCEEEEECCCCCCSSS
T ss_pred HHHHHHHHHHHHcCCCEEEEeeccCCCCCc
Confidence 344556666666777777999999998765
No 127
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=30.92 E-value=2.8e+02 Score=24.48 Aligned_cols=42 Identities=19% Similarity=0.318 Sum_probs=26.3
Q ss_pred HHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEe
Q 019697 223 NKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI 268 (337)
Q Consensus 223 ~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgI 268 (337)
.+.++.+...++|++++.+.+... .....+.+.+.+ ++||.+
T Consensus 52 ~~~i~~l~~~~vdgiIi~~~~~~~--~~~~~~~~~~~~--iPvV~~ 93 (325)
T 2x7x_A 52 AEDVHYFMDEGVDLLIISANEAAP--MTPIVEEAYQKG--IPVILV 93 (325)
T ss_dssp HHHHHHHHHTTCSEEEECCSSHHH--HHHHHHHHHHTT--CCEEEE
T ss_pred HHHHHHHHHcCCCEEEEeCCCHHH--HHHHHHHHHHCC--CeEEEe
Confidence 456777888999999998866432 122234444444 566655
No 128
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=30.86 E-value=2.4e+02 Score=23.80 Aligned_cols=67 Identities=12% Similarity=0.144 Sum_probs=40.3
Q ss_pred eeEEEEccCCCCchhhHHHHHHHHHHhhhcCCcEEEEEccccccccCCCeeeCChhhHhchhccCCcceeccCCC-CchH
Q 019697 145 VRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGG-HDTN 223 (337)
Q Consensus 145 ~~iaIvt~GG~apGmNavIr~lv~~l~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~V~~~~~~GGS~LGTsR~~-~d~~ 223 (337)
.+||++...-.-|-...++.++-+.+.+ ++ .++. +..+... ....
T Consensus 4 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~-~g-~~~~--------------------------------~~~~~~~~~~~~ 49 (275)
T 3d8u_A 4 YSIALIIPSLFEKACAHFLPSFQQALNK-AG-YQLL--------------------------------LGYSDYSIEQEE 49 (275)
T ss_dssp CEEEEEESCSSCHHHHHHHHHHHHHHHH-TS-CEEC--------------------------------CEECTTCHHHHH
T ss_pred eEEEEEeCCCccccHHHHHHHHHHHHHH-CC-CEEE--------------------------------EEcCCCCHHHHH
Confidence 4789998765566667777777777653 21 1211 1111111 1234
Q ss_pred HHHHHHHHhCCCEEEEEcCCcc
Q 019697 224 KIVDNIEDRGINQVYIIGGDGT 245 (337)
Q Consensus 224 ~iv~~L~~~~Id~LviIGGdgs 245 (337)
+.++.+...++|++++.+.+.+
T Consensus 50 ~~~~~l~~~~vdgii~~~~~~~ 71 (275)
T 3d8u_A 50 KLLSTFLESRPAGVVLFGSEHS 71 (275)
T ss_dssp HHHHHHHTSCCCCEEEESSCCC
T ss_pred HHHHHHHhcCCCEEEEeCCCCC
Confidence 5677777888999998887654
No 129
>1o7j_A L-asparaginase; atomic resolution, hydrolase; 1.0A {Erwinia chrysanthemi} SCOP: c.88.1.1 PDB: 1hfj_A 1hfk_A* 1hg0_A 1hg1_A 1hfw_A* 1jsr_A* 1jsl_A 2gvn_A 1zcf_A 2hln_A* 2jk0_A
Probab=30.74 E-value=2.5e+02 Score=26.42 Aligned_cols=60 Identities=17% Similarity=0.159 Sum_probs=38.4
Q ss_pred CCchHHHHHHHHHh----CCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeeccccCCccccC
Q 019697 219 GHDTNKIVDNIEDR----GINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVID 280 (337)
Q Consensus 219 ~~d~~~iv~~L~~~----~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTIDNDI~gtD 280 (337)
.+++.++++.++++ +.|+++|.=|-+||.-...+-...-+ ...|||..=.=.--+-+.+|
T Consensus 67 ~~~w~~la~~I~~~~~~~~~dG~VItHGTDTmeeTA~~Ls~~l~--~~kPVVlTGAmrP~~~~~sD 130 (327)
T 1o7j_A 67 GDVVLKLSQRVNELLARDDVDGVVITHGTDTVEESAYFLHLTVK--SDKPVVFVAAMRPATAISAD 130 (327)
T ss_dssp HHHHHHHHHHHHHHHTSTTCCEEEEECCSTTHHHHHHHHHHHCC--CCSCEEEECCSSCTTSTTCS
T ss_pred HHHHHHHHHHHHHHhccCCCCEEEEecCchhHHHHHHHHHHHhC--CCCCEEEeCCCCCCCCCCCc
Confidence 45677777777665 79999999999999765555455433 45566654433333333444
No 130
>1agx_A Glutaminase-asparaginase; bacterial amidohydrolase; 2.90A {Acinetobacter glutaminasificans} SCOP: c.88.1.1
Probab=30.71 E-value=2.4e+02 Score=26.61 Aligned_cols=60 Identities=15% Similarity=0.174 Sum_probs=38.4
Q ss_pred CCchHHHHHHHHHh----CCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeeccccCCccccC
Q 019697 219 GHDTNKIVDNIEDR----GINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVID 280 (337)
Q Consensus 219 ~~d~~~iv~~L~~~----~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTIDNDI~gtD 280 (337)
.+++.++++.++++ +.|+++|.=|-+||.-...+-...-+ ...|||..=.=.--+-+.+|
T Consensus 64 ~~~w~~la~~I~~~~~~~~~dG~VItHGTDTmeeTA~~Ls~~l~--~~kPVVlTGAmrP~~~~~sD 127 (331)
T 1agx_A 64 DKELLSLARQVNDLVKKPSVNGVVITHGTDTMEETAFFLNLVVH--TDKPIVLVGSMRPSTALSAD 127 (331)
T ss_dssp HHHHHHHHHHHHHHHTSTTCCEEEEECCGGGHHHHHHHHHHHCC--CSSCEEEECCSSCTTSTTCS
T ss_pred HHHHHHHHHHHHHHhccCCCCEEEEecCcchHHHHHHHHHHHcC--CCCCEEEeCCCCCCCCCCch
Confidence 45677777777665 79999999999999765555454433 45566655333333333344
No 131
>3s99_A Basic membrane lipoprotein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, adenine; HET: ADE; 2.05A {Brucella melitensis biovar abortus}
Probab=29.47 E-value=2.5e+02 Score=26.44 Aligned_cols=92 Identities=15% Similarity=0.130 Sum_probs=49.2
Q ss_pred CCCCeeEEEEccCCCC-chhhHHHHHHHHHHhhhcCC-cEEEEEccccccccCCCeeeCChhhHhchhccCCcceeccCC
Q 019697 141 KSDEVRACIVTCGGLC-PGINTVIREIVCGLSYMYGV-DEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRG 218 (337)
Q Consensus 141 ~~~~~~iaIvt~GG~a-pGmNavIr~lv~~l~~~~~~-~~v~Gi~~G~~GL~~~~~~~L~~~~V~~~~~~GGS~LGTsR~ 218 (337)
..+..|||+|+.|+.. -+-|..+..-+..+.+.++. .++. ++-+...
T Consensus 23 ~~~~~kIglv~~g~i~D~~f~~~~~~G~~~~~~~~G~~~~~~-------------------------------~~e~~~~ 71 (356)
T 3s99_A 23 AEEKLKVGFIYIGPPGDFGWTYQHDQARKELVEALGDKVETT-------------------------------FLENVAE 71 (356)
T ss_dssp ---CEEEEEECSSCGGGSSHHHHHHHHHHHHHHHHTTTEEEE-------------------------------EECSCCT
T ss_pred cCCCCEEEEEEccCCCchhHHHHHHHHHHHHHHHhCCceEEE-------------------------------EEecCCC
Confidence 3566899999988764 47777555444444333321 1110 1111122
Q ss_pred CCchHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEe
Q 019697 219 GHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI 268 (337)
Q Consensus 219 ~~d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgI 268 (337)
..+.++.++.|.+.+.|.+|.. |+.-.....++++ ++ -+++++.|
T Consensus 72 ~~d~~~~l~~l~~~g~d~Ii~~-g~~~~~~~~~vA~---~~-Pdv~fv~i 116 (356)
T 3s99_A 72 GADAERSIKRIARAGNKLIFTT-SFGYMDPTVKVAK---KF-PDVKFEHA 116 (356)
T ss_dssp THHHHHHHHHHHHTTCSEEEEC-SGGGHHHHHHHHT---TC-TTSEEEEE
T ss_pred HHHHHHHHHHHHHCCCCEEEEC-CHHHHHHHHHHHH---HC-CCCEEEEE
Confidence 2467788899999999955554 5554444433333 33 13556655
No 132
>3ky8_A Putative riboflavin biosynthesis protein; structural genomic center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE UNL; 2.12A {Shewanella loihica}
Probab=29.34 E-value=20 Score=31.28 Aligned_cols=49 Identities=16% Similarity=0.367 Sum_probs=33.4
Q ss_pred CchHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeeccccC
Q 019697 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDN 274 (337)
Q Consensus 220 ~d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTIDN 274 (337)
.+++++++.|++.+++-++|+||-. ... .|.+. .=-++.+.-+|+.+-.
T Consensus 113 ~~l~~~l~~L~~~~~~~i~v~GG~~-l~~--~l~~g---lvDel~l~~~P~~lG~ 161 (197)
T 3ky8_A 113 GKLVDIIADLNAKGFNELYIDGGVT-IQN--FLKED---LIDEMVITRFPILLGG 161 (197)
T ss_dssp SCHHHHHHHHHHTTCCEEEEESHHH-HHH--HHHTT---CCCEEEEEEESEECSS
T ss_pred CCHHHHHHHHHhCCCCeEEEEehHH-HHH--HHhCC---CCCEEEEEEeeEEECC
Confidence 4788999999999999999999853 322 22110 1114667788988843
No 133
>3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum}
Probab=29.34 E-value=1.2e+02 Score=27.25 Aligned_cols=62 Identities=15% Similarity=0.268 Sum_probs=41.8
Q ss_pred hhccCCcceecc---CCCCchHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEee
Q 019697 205 IHKRGGTILRTS---RGGHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIP 269 (337)
Q Consensus 205 ~~~~GGS~LGTs---R~~~d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIP 269 (337)
+...|+.+.... .+..|+...++.+++.+.+++++.+.+ ..+..+.+.+++.|+++++++..
T Consensus 165 ~~~~G~~v~~~~~~~~~~~d~~~~~~~l~~~~~d~v~~~~~~---~~a~~~~~~~~~~g~~~~~i~~~ 229 (364)
T 3lop_A 165 LKAHALAITAMASYPRNTANVGPAVDKLLAADVQAIFLGATA---EPAAQFVRQYRARGGEAQLLGLS 229 (364)
T ss_dssp HHTTTCCCSEEEEECTTSCCCHHHHHHHHHSCCSEEEEESCH---HHHHHHHHHHHHTTCCCEEEECT
T ss_pred HHHcCCcEEEEEEecCCCccHHHHHHHHHhCCCCEEEEecCc---HHHHHHHHHHHHcCCCCeEEEec
Confidence 445566655432 234578888888999999988886643 23445666677788888877654
No 134
>1zdr_A Dihydrofolate reductase; DHFR, NADP, oxidoreductase; 2.00A {Geobacillus stearothermophilus}
Probab=29.19 E-value=18 Score=30.39 Aligned_cols=49 Identities=20% Similarity=0.296 Sum_probs=37.2
Q ss_pred chHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeeccccCCcc
Q 019697 221 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIA 277 (337)
Q Consensus 221 d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTIDNDI~ 277 (337)
+++++++.|++ +.+-++|+||-..++.+..+.+ .+.+--+|..++.|..
T Consensus 78 ~~~~~l~~l~~-~~~~i~viGG~~l~~~~l~lvD-------el~lt~ip~~~~G~~~ 126 (164)
T 1zdr_A 78 SLEEVKQWIAS-RADEVFIIGGAELFRATMPIVD-------RLYVTKIFASFPGDTF 126 (164)
T ss_dssp SHHHHHHHHHT-CCSCEEEEECHHHHHHHGGGCC-------EEEEEEESSCCCCSEE
T ss_pred CHHHHHHHHhc-CCCeEEEECcHHHHHHHHHhCC-------EEEEEEeccccCCcEE
Confidence 67888888876 5778999999888887765433 3667778998877753
No 135
>3u0h_A Xylose isomerase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, TIM barrel; 2.30A {Alicyclobacillus acidocaldarius subsp}
Probab=29.12 E-value=41 Score=29.21 Aligned_cols=30 Identities=17% Similarity=0.171 Sum_probs=18.8
Q ss_pred hHHHHHHHHHHHHHHhhhcCCCeEEEEEecC
Q 019697 287 TAVEEAQRAINAAHVEVESVENGVGIVKLMG 317 (337)
Q Consensus 287 TAv~~~~~~i~~i~~~A~S~~~rV~iVEvMG 317 (337)
.+.+.+++.+..+...|... +=...+|.++
T Consensus 115 ~~~~~~~~~l~~l~~~a~~~-Gv~l~lE~~~ 144 (281)
T 3u0h_A 115 RYISQLARRIRQVAVELLPL-GMRVGLEYVG 144 (281)
T ss_dssp HHHHHHHHHHHHHHHHHGGG-TCEEEEECCC
T ss_pred hhHHHHHHHHHHHHHHHHHc-CCEEEEEecc
Confidence 35566666666666666543 2345789886
No 136
>2nrr_A Uvrabc system protein C; UVRC, endonuclase, NER, hydrolase; 1.20A {Thermotoga maritima}
Probab=29.09 E-value=1.6e+02 Score=25.37 Aligned_cols=85 Identities=20% Similarity=0.255 Sum_probs=55.1
Q ss_pred CCchHHHHHHHHHh-C----CCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeeccccCCcccc--CcccCchh-HHH
Q 019697 219 GHDTNKIVDNIEDR-G----INQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVI--DKSFGFDT-AVE 290 (337)
Q Consensus 219 ~~d~~~iv~~L~~~-~----Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTIDNDI~gt--D~S~GfdT-Av~ 290 (337)
..|+..+.+.|.++ . =|-++|=||-|=+..|.+..++ .|+.++|+|+-|- ...+... ...+--++ ++.
T Consensus 60 ~DDya~M~Evl~RR~~r~~~PDLilIDGGkgQl~aA~~vl~e---lg~~i~v~glAK~-~e~l~~~~~~i~L~~~s~~l~ 135 (159)
T 2nrr_A 60 PDDYESIRTVVKRRYSKHPLPNLLFVDGGIGQVNAAIEALKE---IGKDCPVVGLAKK-EETVVFENREIHLPHDHPVLR 135 (159)
T ss_dssp -CHHHHHHHHHHHHHTTSCCCSEEEESSCHHHHHHHHHHHHH---TTCCCCEEEEC-----CEEETTEEECCCTTCHHHH
T ss_pred CCHHHHHHHHHHHHhccCCCCCEEEEeCCHHHHHHHHHHHHH---cCCCccEEEEEcC-CcEEEeCCCeeecCCCCHHHH
Confidence 47888888888776 2 4666677898888888877654 4788999999993 1222111 12333333 667
Q ss_pred HHHHHHHHHHHhhhcCC
Q 019697 291 EAQRAINAAHVEVESVE 307 (337)
Q Consensus 291 ~~~~~i~~i~~~A~S~~ 307 (337)
.+++.=|.+|.=|.+.+
T Consensus 136 llqriRDEaHRFAIt~H 152 (159)
T 2nrr_A 136 LLVQIRDETHRFAVSYH 152 (159)
T ss_dssp HHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 77887788887777654
No 137
>2qul_A D-tagatose 3-epimerase; beta/alpha barrel, isomerase; 1.79A {Pseudomonas cichorii} PDB: 2ou4_A 2qum_A* 2qun_A*
Probab=28.78 E-value=2.8e+02 Score=23.86 Aligned_cols=47 Identities=17% Similarity=0.135 Sum_probs=35.8
Q ss_pred CchHHHHHHHHHhCCCEEEEEcCCccH---HHHHHHHHHHHHcCCceeEE
Q 019697 220 HDTNKIVDNIEDRGINQVYIIGGDGTQ---KGAALIYKEVEKRGLQVAVA 266 (337)
Q Consensus 220 ~d~~~iv~~L~~~~Id~LviIGGdgs~---~~a~~L~e~~~~~~~~i~VV 266 (337)
.++++.++.+++.|++++=+....... .....+.+.++++|+.+..+
T Consensus 17 ~~~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~ 66 (290)
T 2qul_A 17 VDFPATAKRIAGLGFDLMEISLGEFHNLSDAKKRELKAVADDLGLTVMCC 66 (290)
T ss_dssp CCHHHHHHHHHHTTCSEEEEESTTGGGSCHHHHHHHHHHHHHHTCEEEEE
T ss_pred ccHHHHHHHHHHhCCCEEEEecCCccccchhhHHHHHHHHHHcCCceEEe
Confidence 468889999999999998877665333 56777888888888876654
No 138
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=28.47 E-value=2.7e+02 Score=23.61 Aligned_cols=68 Identities=9% Similarity=-0.008 Sum_probs=44.5
Q ss_pred CCeeEEEEccCCCCchhhHHHHHHHHHHhhhcCCcEEEEEccccccccCCCeeeCChhhHhchhccCCcceeccCCCCch
Q 019697 143 DEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDT 222 (337)
Q Consensus 143 ~~~~iaIvt~GG~apGmNavIr~lv~~l~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~V~~~~~~GGS~LGTsR~~~d~ 222 (337)
+..+||++...-.-|=...++.++.+.+.+ ++ .++.- ..+. ..+..
T Consensus 4 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~~-------------------------------~~~~-~~~~~ 49 (280)
T 3gyb_A 4 RTQLIAVLIDDYSNPWFIDLIQSLSDVLTP-KG-YRLSV-------------------------------IDSL-TSQAG 49 (280)
T ss_dssp CCCEEEEEESCTTSGGGHHHHHHHHHHHGG-GT-CEEEE-------------------------------ECSS-SSCSS
T ss_pred ccCEEEEEeCCCCChHHHHHHHHHHHHHHH-CC-CEEEE-------------------------------EeCC-CchHH
Confidence 345899999777777788888888887754 22 22221 1111 22334
Q ss_pred HHHHHHHHHhCCCEEEEEcCCcc
Q 019697 223 NKIVDNIEDRGINQVYIIGGDGT 245 (337)
Q Consensus 223 ~~iv~~L~~~~Id~LviIGGdgs 245 (337)
.+.++.|...++|+++ ++.+..
T Consensus 50 ~~~~~~l~~~~vdgiI-~~~~~~ 71 (280)
T 3gyb_A 50 TDPITSALSMRPDGII-IAQDIP 71 (280)
T ss_dssp SCHHHHHHTTCCSEEE-EESCC-
T ss_pred HHHHHHHHhCCCCEEE-ecCCCC
Confidence 4677778889999999 887665
No 139
>1fa2_A Beta-amylase; TIM barrel, hydrolase; HET: DOM; 2.30A {Ipomoea batatas} SCOP: c.1.8.1
Probab=28.35 E-value=2.5e+02 Score=28.50 Aligned_cols=100 Identities=18% Similarity=0.253 Sum_probs=70.2
Q ss_pred hHHHHHHHHHhCCCEEEEE--------cCCc--cHHHHHHHHHHHHHcCCceeEE--------------Eee--c-----
Q 019697 222 TNKIVDNIEDRGINQVYII--------GGDG--TQKGAALIYKEVEKRGLQVAVA--------------GIP--K----- 270 (337)
Q Consensus 222 ~~~iv~~L~~~~Id~LviI--------GGdg--s~~~a~~L~e~~~~~~~~i~VV--------------gIP--k----- 270 (337)
++.=++.||..+++++.+= -|.+ -..+=.+|++-+++.|+++++| .|| .
T Consensus 36 l~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~L~~mv~~~GLKlq~vmSFHqCGgNVGD~~~IPLP~WV~~~ 115 (498)
T 1fa2_A 36 VEDELKQVKAGGCDGVMVDVWWGIIEAKGPKQYDWSAYRELFQLVKKCGLKIQAIMSFHQCGGNVGDAVFIPIPQWILQI 115 (498)
T ss_dssp HHHHHHHHHHTTCCEEEEEEEHHHHTCSBTTBCCCHHHHHHHHHHHHTTCEEEEEEECSCBCCCTTCCCCBCSCHHHHHH
T ss_pred HHHHHHHHHHcCCCEEEEEeEeeeeccCCCCccCcHHHHHHHHHHHHcCCeEEEEEEeeecCCCCCCcccccCCHHHHHh
Confidence 4566788999999999873 2233 2566778889899999999887 344 3
Q ss_pred -cccCCccccCc---------ccCch--------hHHHHHHHHHHHHHHhhhcCC--CeEEEEEecCCCcc
Q 019697 271 -TIDNDIAVIDK---------SFGFD--------TAVEEAQRAINAAHVEVESVE--NGVGIVKLMGRYSG 321 (337)
Q Consensus 271 -TIDNDI~gtD~---------S~Gfd--------TAv~~~~~~i~~i~~~A~S~~--~rV~iVEvMGR~sG 321 (337)
.=|.||..||. |+|.| |+++.+.+.+.+.+++-...- .-|-=|++=.+=||
T Consensus 116 ~~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTpiq~Y~Dfm~SFr~~F~~~~~~~~I~eI~VGlGP~G 186 (498)
T 1fa2_A 116 GDKNPDIFYTNRAGNRNQEYLSLGVDNQRLFQGRTALEMYRDFMESFRDNMADFLKAGDIVDIEVGCGAAG 186 (498)
T ss_dssp TTTCGGGEEECTTCCEEEEEECGGGTTCEEETTEEHHHHHHHHHHHHHHHSHHHHHHTCEEEEEECCSGGG
T ss_pred hccCCCceEECCCCCccccccccccccccccCCCCHHHHHHHHHHHHHHHHHHhccCCeeEEEEeCccccc
Confidence 23458888884 88988 889999999999887765542 22444555444444
No 140
>2h4a_A YRAM (HI1655); perplasmic binding protein, lipoprotein; 1.35A {Haemophilus influenzae} PDB: 3ckm_A
Probab=28.19 E-value=60 Score=30.10 Aligned_cols=65 Identities=11% Similarity=0.015 Sum_probs=44.1
Q ss_pred hhHhchhccCCcceeccCCC--CchHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEe
Q 019697 200 KVVNDIHKRGGTILRTSRGG--HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI 268 (337)
Q Consensus 200 ~~V~~~~~~GGS~LGTsR~~--~d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgI 268 (337)
...+.|...||.+.+..+.. .|+...+..+ +.+.|++|+.|. ...+..|...++..+.++++.+-
T Consensus 141 ~F~~~~~~~Gg~vv~~~~y~~~~d~~~~l~~i-~~~pDaV~~~~~---~~~~~~i~~~~~~~g~~~pl~~~ 207 (325)
T 2h4a_A 141 AFNVRWQQLAGTDANIRYYNLPADVTYFVQEN-NSNTTALYAVAS---PTELAEXKGYLTNIVPNLAIYAS 207 (325)
T ss_dssp HHHHHHHHHHSSCCEEEEESSTTHHHHHHHHS-TTCCCEEEECCC---HHHHHHHHHHHTTTCTTCEEEEC
T ss_pred HHHHHHHHcCCCcceeEecCCHHHHHHHHHhc-CCCCCEEEEeCC---HHHHhhhhhhHhhcCCCCCEEEe
Confidence 34566788899888765542 4555555554 378999999764 34566777777666778888775
No 141
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=27.89 E-value=2.1e+02 Score=22.99 Aligned_cols=11 Identities=18% Similarity=0.362 Sum_probs=6.8
Q ss_pred eEEEEccCCCC
Q 019697 146 RACIVTCGGLC 156 (337)
Q Consensus 146 ~iaIvt~GG~a 156 (337)
||.+-+.||+.
T Consensus 5 ~vvla~~~~d~ 15 (137)
T 1ccw_A 5 TIVLGVIGSDC 15 (137)
T ss_dssp EEEEEEETTCC
T ss_pred EEEEEeCCCch
Confidence 56666666664
No 142
>2wlt_A L-asparaginase; hydrolase; 1.40A {Helicobacter pylori} PDB: 2wt4_A
Probab=27.58 E-value=2.8e+02 Score=26.14 Aligned_cols=60 Identities=17% Similarity=0.072 Sum_probs=38.8
Q ss_pred CCchHHHHHHHHHh----CCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeeccccCCccccC
Q 019697 219 GHDTNKIVDNIEDR----GINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVID 280 (337)
Q Consensus 219 ~~d~~~iv~~L~~~----~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTIDNDI~gtD 280 (337)
.+++.++++.++++ +.|+++|.=|-+||.-...+-...-+ ...|||..=.=.--+-+.+|
T Consensus 67 ~~~w~~la~~I~~~~~~~~~dG~VItHGTDTmeeTA~~Ls~~l~--~~kPVVlTGAmrP~~~~~sD 130 (332)
T 2wlt_A 67 EEIWFKLAQRAQELLDDSRIQGVVITHGTDTLEESAYFLNLVLH--STKPVVLVGAMRNASSLSAD 130 (332)
T ss_dssp HHHHHHHHHHHHHHHTSTTCCEEEEECCSSSHHHHHHHHHHHCC--CSSCEEEECCSSCTTSTTCS
T ss_pred HHHHHHHHHHHHHHhccCCCCEEEEecCchhHHHHHHHHHHHhC--CCCCEEEECCCCCCCCCCcc
Confidence 45677777777765 79999999999999765555454433 45566654443333334444
No 143
>2qru_A Uncharacterized protein; alpha/beta-hydrolase, structural GENO PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 1.65A {Enterococcus faecalis}
Probab=27.36 E-value=1.3e+02 Score=25.96 Aligned_cols=42 Identities=19% Similarity=0.350 Sum_probs=32.7
Q ss_pred CchhHHHHHHHHHHHHHHhhhcCCCeEEEEEecCCCc-cHHHHHHHH
Q 019697 284 GFDTAVEEAQRAINAAHVEVESVENGVGIVKLMGRYS-GFISMYATL 329 (337)
Q Consensus 284 GfdTAv~~~~~~i~~i~~~A~S~~~rV~iVEvMGR~s-G~LA~~aaL 329 (337)
-|.++++-+.++++.+...+.. .++++ +||-++ |+||+..++
T Consensus 73 ~~p~~~~D~~~al~~l~~~~~~-~~~i~---l~G~SaGG~lA~~~a~ 115 (274)
T 2qru_A 73 KIDHILRTLTETFQLLNEEIIQ-NQSFG---LCGRSAGGYLMLQLTK 115 (274)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTT-TCCEE---EEEETHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHhcccc-CCcEE---EEEECHHHHHHHHHHH
Confidence 7899999999999988876643 34554 678887 699988887
No 144
>3mjf_A Phosphoribosylamine--glycine ligase; structural genomics, CEN structural genomics of infectious diseases, csgid; HET: MSE PGE; 1.47A {Yersinia pestis} PDB: 1gso_A
Probab=27.16 E-value=1.2e+02 Score=29.14 Aligned_cols=38 Identities=18% Similarity=0.119 Sum_probs=21.9
Q ss_pred CeeEEEEccCCCCchhhHHHHHHHHHHhhhcCCcEEEEEccccccc
Q 019697 144 EVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGF 189 (337)
Q Consensus 144 ~~~iaIvt~GG~apGmNavIr~lv~~l~~~~~~~~v~Gi~~G~~GL 189 (337)
.+||.|+-+||- -+ ++...+.+..++.++|.. .|..|.
T Consensus 3 ~mkvlviG~ggr---e~----ala~~l~~s~~v~~v~~~-pgn~g~ 40 (431)
T 3mjf_A 3 AMNILIIGNGGR---EH----ALGWKAAQSPLADKIYVA-PGNAGT 40 (431)
T ss_dssp CEEEEEEECSHH---HH----HHHHHHTTCTTEEEEEEE-ECCHHH
T ss_pred CcEEEEECCCHH---HH----HHHHHHHhCCCCCEEEEE-CCCHHH
Confidence 479999988852 22 334444444344567766 455554
No 145
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=26.97 E-value=3e+02 Score=23.63 Aligned_cols=86 Identities=10% Similarity=-0.041 Sum_probs=48.5
Q ss_pred CCeeEEEEccCCCC--chhhHHHHHHHHHHhhhcCCcEEEEEccccccccCCCeeeCChhhHhchhccCCcceeccCCCC
Q 019697 143 DEVRACIVTCGGLC--PGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGH 220 (337)
Q Consensus 143 ~~~~iaIvt~GG~a--pGmNavIr~lv~~l~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~V~~~~~~GGS~LGTsR~~~ 220 (337)
+..+|||+...-.- |=...++.++-+.+.+ ++ .++.-+ + +.....
T Consensus 7 ~s~~Igvv~~~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~~~---------------~----------------~~~~~~ 53 (288)
T 3gv0_A 7 KTNVIALVLSVDEELMGFTSQMVFGITEVLST-TQ-YHLVVT---------------P----------------HIHAKD 53 (288)
T ss_dssp CCCEEEEECBCCCCSSCHHHHHHHHHHHHHTT-SS-CEEEEC---------------C----------------BSSGGG
T ss_pred CCCEEEEEecCCccccHHHHHHHHHHHHHHHH-cC-CEEEEe---------------c----------------CCcchh
Confidence 34589999865433 7777788888777753 22 222100 0 000112
Q ss_pred chHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEE
Q 019697 221 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAG 267 (337)
Q Consensus 221 d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVg 267 (337)
...++.+.+...++|++++.+.+..-.. .+.+.+.+ +++|.
T Consensus 54 ~~~~~~~~l~~~~vdgiIi~~~~~~~~~----~~~l~~~~--iPvV~ 94 (288)
T 3gv0_A 54 SMVPIRYILETGSADGVIISKIEPNDPR----VRFMTERN--MPFVT 94 (288)
T ss_dssp TTHHHHHHHHHTCCSEEEEESCCTTCHH----HHHHHHTT--CCEEE
T ss_pred HHHHHHHHHHcCCccEEEEecCCCCcHH----HHHHhhCC--CCEEE
Confidence 2356667788899999999886644322 23334444 55664
No 146
>1wls_A L-asparaginase; structural genomics, hydrolase; 2.16A {Pyrococcus horikoshii} PDB: 1wnf_A
Probab=26.92 E-value=2.7e+02 Score=26.17 Aligned_cols=61 Identities=15% Similarity=0.118 Sum_probs=40.5
Q ss_pred CCchHHHHHHHHHh--CCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeeccccCCccccC
Q 019697 219 GHDTNKIVDNIEDR--GINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVID 280 (337)
Q Consensus 219 ~~d~~~iv~~L~~~--~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTIDNDI~gtD 280 (337)
.+++.++++.++++ +.|+++|.=|-+||.-...+-.++- .+.+.|||..=.=.--+-+.+|
T Consensus 57 ~~~w~~la~~I~~~~~~~dG~VItHGTDTmeeTA~~Ls~ll-~~~~kPVVlTGAqrP~~~~~sD 119 (328)
T 1wls_A 57 PSDWERLAKEIEKEVWEYDGIVITHGTDTMAYSASMLSFML-RNPPIPIVLTGSMLPITEKNSD 119 (328)
T ss_dssp HHHHHHHHHHHHHHTTTCSEEEEECCGGGHHHHHHHHHHHE-ESCSSEEEEECCSSCTTSSSCS
T ss_pred HHHHHHHHHHHHHHhccCCeEEEEcCCchHHHHHHHHHHHH-hCCCCCEEEECCCCCCCCCCCc
Confidence 45778888888776 8999999999999976555544321 2456677765443333444444
No 147
>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima}
Probab=26.86 E-value=3.4e+02 Score=24.11 Aligned_cols=31 Identities=16% Similarity=0.149 Sum_probs=20.3
Q ss_pred CCCeeEEEEc--cCCCCchhhHHHHHHHHHHhh
Q 019697 142 SDEVRACIVT--CGGLCPGINTVIREIVCGLSY 172 (337)
Q Consensus 142 ~~~~~iaIvt--~GG~apGmNavIr~lv~~l~~ 172 (337)
+.+.|||++. +|..++-.....+++-..+.+
T Consensus 14 ~~~~~iG~~~plsG~~a~~g~~~~~g~~~a~~~ 46 (366)
T 3td9_A 14 RKVVKIAVILPMTGGISAFGRMVWEGIQIAHEE 46 (366)
T ss_dssp --CEEEEEEECCSSTTHHHHHHHHHHHHHHHHH
T ss_pred cceEEEEEEECCcCcchhcCHHHHHHHHHHHHH
Confidence 4568999998 566666566666776666654
No 148
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Probab=26.70 E-value=3.2e+02 Score=23.77 Aligned_cols=69 Identities=13% Similarity=0.249 Sum_probs=39.7
Q ss_pred CeeEEEEccCCCCchhhHHHHHHHHHHhhhcCCcEEEEEccccccccCCCeeeCChhhHhchhccCCcceeccCCCCchH
Q 019697 144 EVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTN 223 (337)
Q Consensus 144 ~~~iaIvt~GG~apGmNavIr~lv~~l~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~V~~~~~~GGS~LGTsR~~~d~~ 223 (337)
..+|||+ ..-.-|-...+++++-..+.+ .||.| .++ .+. +.-|.+..+...
T Consensus 2 ~~~Igvi-~~~~~p~~~~i~~gi~~~l~~-----------~gy~g---~~v-~l~-------------~~~~~~~~~~~~ 52 (295)
T 3lft_A 2 NAKIGVL-QFVSHPSLDLIYKGIQDGLAE-----------EGYKD---DQV-KID-------------FMNSEGDQSKVA 52 (295)
T ss_dssp CEEEEEE-ECSCCHHHHHHHHHHHHHHHH-----------TTCCG---GGE-EEE-------------EEECTTCHHHHH
T ss_pred ceEEEEE-EccCChhHHHHHHHHHHHHHH-----------cCCCC---Cce-EEE-------------EecCCCCHHHHH
Confidence 3589988 334456667788888777753 23322 010 000 001122222345
Q ss_pred HHHHHHHHhCCCEEEEEc
Q 019697 224 KIVDNIEDRGINQVYIIG 241 (337)
Q Consensus 224 ~iv~~L~~~~Id~LviIG 241 (337)
++++.|.+.++|+++++|
T Consensus 53 ~~~~~l~~~~vDgII~~~ 70 (295)
T 3lft_A 53 TMSKQLVANGNDLVVGIA 70 (295)
T ss_dssp HHHHHHTTSSCSEEEEES
T ss_pred HHHHHHHhcCCCEEEECC
Confidence 778888999999999986
No 149
>2bl9_A Dihydrofolate reductase-thymidylate synthase; plamodium vivax, pyrimethamine, malaria, drug resistance, oxidoreductase; HET: NDP CP6; 1.9A {Plasmodium vivax} PDB: 2blb_A* 2blc_A* 2bla_A*
Probab=26.54 E-value=27 Score=31.90 Aligned_cols=51 Identities=16% Similarity=0.242 Sum_probs=39.1
Q ss_pred chHHHHHHHHHhCCCEEEEEcCCccHHHHHH--HHHHHHHcCCceeEEEeeccccCCccc
Q 019697 221 DTNKIVDNIEDRGINQVYIIGGDGTQKGAAL--IYKEVEKRGLQVAVAGIPKTIDNDIAV 278 (337)
Q Consensus 221 d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~--L~e~~~~~~~~i~VVgIPkTIDNDI~g 278 (337)
+++.+++.|++.+.+-++||||-.-++.+.. +.+ .+.+--||..++.|..+
T Consensus 154 sl~eal~~lk~~~~~~I~ViGGa~Iy~~~L~~glvD-------el~lT~ip~~~gGD~~F 206 (238)
T 2bl9_A 154 SIDDLLLLLKKLKYYKCFIIGGAQVYRECLSRNLIK-------QIYFTRINGAYPCDVFF 206 (238)
T ss_dssp CHHHHHHHHHTCCCSCEEEEECHHHHHHHHHTTCCS-------EEEEEEEEEEECCSEEC
T ss_pred CHHHHHHHHHhCCCCCEEEECcHHHHHHHhcccCCC-------EEEEEEeccccCCceeC
Confidence 6888899998877888999999777766654 332 36678889998877744
No 150
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=25.94 E-value=2.9e+02 Score=23.90 Aligned_cols=78 Identities=13% Similarity=0.143 Sum_probs=43.9
Q ss_pred hHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeeccccCCcccc---CcccCch--hHHHHHHHHH
Q 019697 222 TNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVI---DKSFGFD--TAVEEAQRAI 296 (337)
Q Consensus 222 ~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTIDNDI~gt---D~S~Gfd--TAv~~~~~~i 296 (337)
..++++.|...++|++++.+.+.+-. +.+.+.+.+ +++|.+ |++++.. -.++++| .+...+++.+
T Consensus 57 ~~~~~~~l~~~~vdGiI~~~~~~~~~----~~~~l~~~~--iPvV~i----~~~~~~~~~~~~~V~~D~~~~~~~a~~~L 126 (295)
T 3hcw_A 57 MDEVYKMIKQRMVDAFILLYSKENDP----IKQMLIDES--MPFIVI----GKPTSDIDHQFTHIDNDNILASENLTRHV 126 (295)
T ss_dssp HHHHHHHHHTTCCSEEEESCCCTTCH----HHHHHHHTT--CCEEEE----SCCCSSGGGGSCEEEECHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcCEEEEcCcccChH----HHHHHHhCC--CCEEEE----CCCCccccCCceEEecCcHHHHHHHHHHH
Confidence 35678888999999999998765432 233344445 556644 4554433 2345544 2333333333
Q ss_pred HHHHHhhhcCCCeEEEEEe
Q 019697 297 NAAHVEVESVENGVGIVKL 315 (337)
Q Consensus 297 ~~i~~~A~S~~~rV~iVEv 315 (337)
.. .++ ++|.++--
T Consensus 127 ---~~--~G~-~~I~~i~~ 139 (295)
T 3hcw_A 127 ---IE--QGV-DELIFITE 139 (295)
T ss_dssp ---HH--HCC-SEEEEEEE
T ss_pred ---HH--cCC-ccEEEEcC
Confidence 22 254 56887754
No 151
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=25.90 E-value=1.2e+02 Score=23.82 Aligned_cols=57 Identities=25% Similarity=0.448 Sum_probs=46.8
Q ss_pred hhccCCcceeccCCCCchHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCc
Q 019697 205 IHKRGGTILRTSRGGHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQ 262 (337)
Q Consensus 205 ~~~~GGS~LGTsR~~~d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~ 262 (337)
-|+-+|-.+.|.-+.+|+..|++.++..+---++.+-|. +......+..+.++.|..
T Consensus 23 khnypgryirtatssqdirdiiksmkdngkplvvfvnga-sqndvnefqneakkegvs 79 (112)
T 2lnd_A 23 KHNYPGRYIRTATSSQDIRDIIKSMKDNGKPLVVFVNGA-SQNDVNEFQNEAKKEGVS 79 (112)
T ss_dssp HHHSCTTTEEEECSHHHHHHHHHHHTTCCSCEEEEECSC-CHHHHHHHHHHHHHHTCE
T ss_pred hcCCCCceeeeccchhhHHHHHHHHHhcCCeEEEEecCc-ccccHHHHHHHHHhcCcc
Confidence 467788888888778899999999999998888888775 577788888888888754
No 152
>3gh1_A Predicted nucleotide-binding protein; structural genomics, protein structure initiative; 1.90A {Vibrio cholerae o1 biovar el tor str} PDB: 2pmb_A
Probab=25.86 E-value=2.4e+02 Score=28.32 Aligned_cols=19 Identities=26% Similarity=0.429 Sum_probs=11.6
Q ss_pred CEEE-EEcCCccHHHHHHHH
Q 019697 235 NQVY-IIGGDGTQKGAALIY 253 (337)
Q Consensus 235 d~Lv-iIGGdgs~~~a~~L~ 253 (337)
|+++ +=||.||+.....+.
T Consensus 249 DAfIaLPGG~GTLEELfE~L 268 (462)
T 3gh1_A 249 HGIIIFPGGPGTAEELLYIL 268 (462)
T ss_dssp SEEEECSCSHHHHHHHHHHH
T ss_pred CEEEEcCCCcchHHHHHHHH
Confidence 4444 457888887655443
No 153
>1wsa_A Asparaginase, asparagine amidohydrolase; periplasmic; 2.20A {Wolinella succinogenes} SCOP: c.88.1.1
Probab=25.72 E-value=2.5e+02 Score=26.41 Aligned_cols=60 Identities=18% Similarity=0.136 Sum_probs=37.7
Q ss_pred CCchHHHHHHHHHh----CCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeeccccCCccccC
Q 019697 219 GHDTNKIVDNIEDR----GINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVID 280 (337)
Q Consensus 219 ~~d~~~iv~~L~~~----~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTIDNDI~gtD 280 (337)
.+++.++++.++++ +.|+++|.=|-+||.-....-...-+ ...|||..=.=.--+-+.+|
T Consensus 65 ~~~w~~la~~I~~~~~~~~~dG~VItHGTDTmeeTA~~Ls~~l~--~~kPVVlTGAmrP~~~~~sD 128 (330)
T 1wsa_A 65 GKVWLKLAKRVNELLAQKETEAVIITHGTDTMEETAFFLNLTVK--SQKPVVLVGAMRPGSSMSAD 128 (330)
T ss_dssp HHHHHHHHHHHHHHHHSTTCCCEEEECCSSSHHHHHHHHHHHCC--CSSCEEEECCSSCTTSTTCS
T ss_pred HHHHHHHHHHHHHHhccCCCCEEEEEcCcchHHHHHHHHHHHcC--CCCCEEEeCCCCCCCCCCCc
Confidence 45666776666654 79999999999999765555454433 45566654333333333444
No 154
>1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine biosynthesis, spine, lyase; 1.80A {Bacillus anthracis} SCOP: c.23.8.1
Probab=25.70 E-value=50 Score=28.96 Aligned_cols=52 Identities=17% Similarity=0.292 Sum_probs=27.7
Q ss_pred ccCCCCchHHHHHHHHHhCCCEEEEE-cCCccHHHHHHHHHHHHHcCCceeEEEeecccc
Q 019697 215 TSRGGHDTNKIVDNIEDRGINQVYII-GGDGTQKGAALIYKEVEKRGLQVAVAGIPKTID 273 (337)
Q Consensus 215 TsR~~~d~~~iv~~L~~~~Id~LviI-GGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTID 273 (337)
--|+.+.+.+++++.++.+++.++.+ |+.+.+-++.. -....||||||-...
T Consensus 48 aHR~p~~l~~~~~~a~~~g~~ViIa~AG~aa~LpgvvA-------~~t~~PVIgVP~~~~ 100 (170)
T 1xmp_A 48 AHRTPDYMFEYAETARERGLKVIIAGAGGAAHLPGMVA-------AKTNLPVIGVPVQSK 100 (170)
T ss_dssp TTTSHHHHHHHHHHTTTTTCCEEEEEEESSCCHHHHHH-------TTCCSCEEEEEECCT
T ss_pred ccCCHHHHHHHHHHHHhCCCcEEEEECCchhhhHHHHH-------hccCCCEEEeeCCCC
Confidence 33444455555555555666654444 33333333321 125688999997543
No 155
>4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae}
Probab=25.47 E-value=1.5e+02 Score=27.93 Aligned_cols=19 Identities=21% Similarity=0.520 Sum_probs=10.8
Q ss_pred ccccC--CCCeeEEEEccCCC
Q 019697 137 KVYFK--SDEVRACIVTCGGL 155 (337)
Q Consensus 137 ~~~f~--~~~~~iaIvt~GG~ 155 (337)
.++|+ ++++|||||=+|.-
T Consensus 17 ~~~~~~Ms~klrvgiIG~G~i 37 (412)
T 4gqa_A 17 NLYFQSMSARLNIGLIGSGFM 37 (412)
T ss_dssp --------CEEEEEEECCSHH
T ss_pred cCccccccccceEEEEcCcHH
Confidence 44543 56789999998854
No 156
>2jfn_A Glutamate racemase; cell WALL, isomerase, cell shape, UDP- murnac-Ala, peptidoglycan biosynthesis, peptidoglycan synthesis; HET: GLU UMA; 1.9A {Escherichia coli}
Probab=25.21 E-value=2.1e+02 Score=26.07 Aligned_cols=24 Identities=25% Similarity=0.169 Sum_probs=17.4
Q ss_pred CeeEEEEccCCCCchhhHHHHHHHHHH
Q 019697 144 EVRACIVTCGGLCPGINTVIREIVCGL 170 (337)
Q Consensus 144 ~~~iaIvt~GG~apGmNavIr~lv~~l 170 (337)
..+|||.-|| -|.-++++.+.+.+
T Consensus 21 ~~~IgvfDSG---vGGltv~~~i~~~l 44 (285)
T 2jfn_A 21 RPTVLVFDSG---VGGLSVYDEIRHLL 44 (285)
T ss_dssp EEEEEEEESS---STHHHHHHHHHHHS
T ss_pred CCcEEEEeCC---ccHHHHHHHHHHhC
Confidence 3579999987 55556778877644
No 157
>2obn_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: PG4; 2.30A {Anabaena variabilis}
Probab=25.00 E-value=1.8e+02 Score=27.84 Aligned_cols=159 Identities=15% Similarity=0.166 Sum_probs=81.5
Q ss_pred CCCeeEEEEccCCCCchhhHHHHHHHHHHhhhcCCcEEEEEccccccccCCCeeeCChhhHhchhccCCcceeccCCCCc
Q 019697 142 SDEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHD 221 (337)
Q Consensus 142 ~~~~~iaIvt~GG~apGmNavIr~lv~~l~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~V~~~~~~GGS~LGTsR~~~d 221 (337)
++.+=+|+...||.-|- .....+.+.+. .+ ..|+ .|..-++.++ ++ +......|-+++.+..-..+
T Consensus 74 ~d~lvig~a~~gG~l~~--~~~~~i~~Al~--~G-~~Vv---sglh~~l~~~-----pe-l~~~A~~g~~i~dvr~pp~~ 139 (349)
T 2obn_A 74 PQVLVIGIAPKGGGIPD--DYWIELKTALQ--AG-MSLV---NGLHTPLANI-----PD-LNALLQPGQLIWDVRKEPAN 139 (349)
T ss_dssp CSEEEECCCCCCC-SCG--GGHHHHHHHHH--TT-CEEE---ECSSSCCTTC-----HH-HHHHCCTTCCEEETTCCCSS
T ss_pred CCEEEEEecCCCCCCCH--HHHHHHHHHHH--cC-CcEE---eCccchhhCC-----HH-HHHHHHcCCEEEEeccCccc
Confidence 44555666666888774 23333333443 23 3443 2222222222 22 44444445567776554433
Q ss_pred hHHHHHHHHHhCCCEEEEEcCCcc---HHHHHHHHHHHHHcCCceeEEEeecc---ccCCccccCcccCchhHHHHHHHH
Q 019697 222 TNKIVDNIEDRGINQVYIIGGDGT---QKGAALIYKEVEKRGLQVAVAGIPKT---IDNDIAVIDKSFGFDTAVEEAQRA 295 (337)
Q Consensus 222 ~~~iv~~L~~~~Id~LviIGGdgs---~~~a~~L~e~~~~~~~~i~VVgIPkT---IDNDI~gtD~S~GfdTAv~~~~~~ 295 (337)
+.-.....++.....+++.|=|-+ +..+..|.++++++|++..++.---| |+...-..|. .=.|.+ +-+
T Consensus 140 l~~~~g~~~~v~~k~i~v~GTD~~VGK~~ts~~L~~~l~~~G~~a~~~~tgqtg~~~~~~gi~~Da-v~~df~----aG~ 214 (349)
T 2obn_A 140 LDVASGAARTLPCRRVLTVGTDMAIGKMSTSLELHWAAKLRGWRSKFLATGQTGVMLEGDGVALDA-VRVDFA----AGA 214 (349)
T ss_dssp CCCCCSGGGGCSSEEEEEEESSSSSSHHHHHHHHHHHHHHTTCCEEEECCSHHHHHHHSCSCCGGG-SBHHHH----HHH
T ss_pred ccccccceeeecceEEEEcCCCccccceeHHHHHHHHHHhcCCcEEEEeccchhhhhhcCCcchhH-HHHHHH----hhh
Confidence 321122223445667999997644 78899999999999998766542223 2222111231 112332 334
Q ss_pred HHHHHHhhhcCCCeEEEEEecCCCc
Q 019697 296 INAAHVEVESVENGVGIVKLMGRYS 320 (337)
Q Consensus 296 i~~i~~~A~S~~~rV~iVEvMGR~s 320 (337)
+..+..++.. +..|-+||=.|.-.
T Consensus 215 ve~~~~~~~~-~~d~vlVEGqGgl~ 238 (349)
T 2obn_A 215 VEQMVMRYGK-NYDILHIEGQGSLL 238 (349)
T ss_dssp HHHHHHHHTT-TCSEEEECCCCCTT
T ss_pred HHHHHHHhcc-CCCEEEEeCCCccc
Confidence 4444444432 24589999888643
No 158
>1j3k_A Bifunctional dihydrofolate reductase-thymidylate synthase; oxidoreductase, transferase; HET: WRA NDP UMP; 2.10A {Plasmodium falciparum} SCOP: c.71.1.1 PDB: 3dg8_A* 1j3j_A* 1j3i_A* 3dga_A*
Probab=24.81 E-value=31 Score=32.34 Aligned_cols=51 Identities=14% Similarity=0.236 Sum_probs=39.3
Q ss_pred chHHHHHHHHHhCCCEEEEEcCCccHHHHHH--HHHHHHHcCCceeEEEeeccccCCccc
Q 019697 221 DTNKIVDNIEDRGINQVYIIGGDGTQKGAAL--IYKEVEKRGLQVAVAGIPKTIDNDIAV 278 (337)
Q Consensus 221 d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~--L~e~~~~~~~~i~VVgIPkTIDNDI~g 278 (337)
+++.+++.|++.+..-++||||-..++.+.. |.+ .+.+--||..+..|..+
T Consensus 145 sl~eal~~lk~~~~~~I~ViGGa~ly~~~L~~glvD-------el~LT~Ip~~lgGD~~F 197 (280)
T 1j3k_A 145 KVEDLIVLLGKLNYYKCFILGGSVVYQEFLEKKLIK-------KIYFTRINSTYECDVFF 197 (280)
T ss_dssp SHHHHHHHHHHSCCSCEEECCCHHHHHHHHHTTCCS-------EEEEEEEEEEECCSEEC
T ss_pred CHHHHHHHHHhCCCCcEEEECCHHHHHHHhcCccCC-------EEEEEEeccccCCceeC
Confidence 6888999999888888999999877776655 332 36677889988877644
No 159
>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp domain, carbamoylphosphate synthase subunit (split gene in MJ); 2.00A {Exiguobacterium sibiricum}
Probab=24.79 E-value=3.7e+02 Score=23.86 Aligned_cols=39 Identities=13% Similarity=0.079 Sum_probs=22.8
Q ss_pred chHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcC
Q 019697 221 DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRG 260 (337)
Q Consensus 221 d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~ 260 (337)
..+.+.+.++++++|.++. +-+.....+..+.+.+++.|
T Consensus 60 ~~~~l~~~~~~~~~d~vi~-~~~~~~~~~a~~~~~l~~~g 98 (331)
T 2pn1_A 60 YIDHLLTLCQDEGVTALLT-LIDPELGLLAQATERFQAIG 98 (331)
T ss_dssp HHHHHHHHHHHHTCCEEEE-SSHHHHHHHHHTHHHHHTTT
T ss_pred HHHHHHHHHHHcCCCEEEe-CCchhHHHHHHHHHHHHhCC
Confidence 4678888888889997765 32222323334455554434
No 160
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=24.77 E-value=3.3e+02 Score=23.35 Aligned_cols=86 Identities=7% Similarity=-0.037 Sum_probs=49.0
Q ss_pred CeeEEEEccC-C---CCchhhHHHHHHHHHHhhhcCCcEEEEEccccccccCCCeeeCChhhHhchhccCCcceeccCCC
Q 019697 144 EVRACIVTCG-G---LCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGG 219 (337)
Q Consensus 144 ~~~iaIvt~G-G---~apGmNavIr~lv~~l~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~V~~~~~~GGS~LGTsR~~ 219 (337)
..+||++... - .-|-...++.++.+.+.+ ++ .++.-+ -+....
T Consensus 4 s~~Ig~i~~~~~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~~~-------------------------------~~~~~~ 50 (287)
T 3bbl_A 4 SFMIGYSWTQTEPGQVNHILDQFLSSMVREAGA-VN-YFVLPF-------------------------------PFSEDR 50 (287)
T ss_dssp CCEEEECCCCCCTTCSCCTHHHHHHHHHHHHHH-TT-CEEEEC-------------------------------CCCSST
T ss_pred eeEEEEEecccccccCChhHHHHHHHHHHHHHH-cC-CEEEEE-------------------------------eCCCch
Confidence 3478888865 3 566777788888777754 22 222100 000111
Q ss_pred CchHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEe
Q 019697 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI 268 (337)
Q Consensus 220 ~d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgI 268 (337)
....+.++.+...++|++++.+.+.+-. ..+.+.+.+ +++|.+
T Consensus 51 ~~~~~~~~~l~~~~vdgiIi~~~~~~~~----~~~~l~~~~--iPvV~~ 93 (287)
T 3bbl_A 51 SQIDIYRDLIRSGNVDGFVLSSINYNDP----RVQFLLKQK--FPFVAF 93 (287)
T ss_dssp TCCHHHHHHHHTTCCSEEEECSCCTTCH----HHHHHHHTT--CCEEEE
T ss_pred HHHHHHHHHHHcCCCCEEEEeecCCCcH----HHHHHHhcC--CCEEEE
Confidence 2335667788888999999988764422 223333434 556655
No 161
>3nxk_A Cytoplasmic L-asparaginase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; 2.40A {Campylobacter jejuni subsp}
Probab=24.77 E-value=1.4e+02 Score=28.29 Aligned_cols=60 Identities=17% Similarity=0.104 Sum_probs=38.1
Q ss_pred CCchHHHHHHHHHh---CCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeeccccCCccccC
Q 019697 219 GHDTNKIVDNIEDR---GINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVID 280 (337)
Q Consensus 219 ~~d~~~iv~~L~~~---~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTIDNDI~gtD 280 (337)
.+++.++++.+++. +.|+++|.=|-+||.-...+....- +.+.|||..=+=.--+.+.+|
T Consensus 71 ~~~~~~la~~i~~~~~~~~dGvVItHGTDTm~~TA~~L~~~l--~~~kPVVlTGa~rp~~~~~sD 133 (334)
T 3nxk_A 71 DEIWLRLAKKIAKLFAEGIDGVVITHGTDTMEETAYFLNLTI--KSDKPVVLVGAMRPSTAISAD 133 (334)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEECCSTTHHHHHHHHHHHC--CCCSCEEEECCSSCTTSTTCS
T ss_pred HHHHHHHHHHHHHHhhcCCCeEEEECCCchHHHHHHHHHHHc--CCCCCEEEECCCCCCCCCCch
Confidence 45677777777664 7999999999999976555444433 445566654333333344444
No 162
>3fij_A LIN1909 protein; 11172J, uncharacterized protein, nysgrc, PSI-II, structural genomics, protein structure initiative; 2.30A {Listeria innocua}
Probab=24.74 E-value=2.2e+02 Score=25.21 Aligned_cols=46 Identities=20% Similarity=0.301 Sum_probs=25.9
Q ss_pred eeCChhhHhchhccCCcceeccCCCCchHHHHHHHHHhCCCEEEEEcCCc
Q 019697 195 LTLSPKVVNDIHKRGGTILRTSRGGHDTNKIVDNIEDRGINQVYIIGGDG 244 (337)
Q Consensus 195 ~~L~~~~V~~~~~~GGS~LGTsR~~~d~~~iv~~L~~~~Id~LviIGGdg 244 (337)
.-+..+.++.+...||..+=-. ...+.+ +.+.|. ++|+|++-||.+
T Consensus 27 ~~~~~~~~~~l~~aG~~pv~lp-~~~~~~-~~~~l~--~~DGlil~GG~~ 72 (254)
T 3fij_A 27 TYTQQRYVDAIQKVGGFPIALP-IDDPST-AVQAIS--LVDGLLLTGGQD 72 (254)
T ss_dssp ---CHHHHHHHHHHTCEEEEEC-CCCGGG-HHHHHH--TCSEEEECCCSC
T ss_pred hhhhHHHHHHHHHCCCEEEEEe-CCCchH-HHHHHh--hCCEEEECCCCC
Confidence 3456677777888888533211 112233 433343 589999999954
No 163
>1qdl_B Protein (anthranilate synthase (TRPG-SUBUNIT)); tryptophan biosynthesis, glutamine amidotransferase, allosteric interaction, lyase; 2.50A {Sulfolobus solfataricus} SCOP: c.23.16.1
Probab=24.49 E-value=53 Score=27.92 Aligned_cols=17 Identities=29% Similarity=0.366 Sum_probs=9.5
Q ss_pred HHhCCCEEEEEcCCccH
Q 019697 230 EDRGINQVYIIGGDGTQ 246 (337)
Q Consensus 230 ~~~~Id~LviIGGdgs~ 246 (337)
+..++|+|++-||.++.
T Consensus 42 ~~~~~dglil~gG~~~~ 58 (195)
T 1qdl_B 42 ERIDPDRLIISPGPGTP 58 (195)
T ss_dssp HHHCCSEEEECCCSSCT
T ss_pred hhCCCCEEEECCCCCCh
Confidence 33456666666665553
No 164
>2b3z_A Riboflavin biosynthesis protein RIBD; alpha/beta/alpha, deaminase domain and reductase domain, hydrolase, oxidoreductase; 2.41A {Bacillus subtilis} SCOP: c.71.1.2 c.97.1.2 PDB: 2d5n_A* 3ex8_A*
Probab=24.36 E-value=76 Score=30.40 Aligned_cols=49 Identities=20% Similarity=0.356 Sum_probs=37.6
Q ss_pred CchHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCC--ceeEEEeeccccCC
Q 019697 220 HDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGL--QVAVAGIPKTIDND 275 (337)
Q Consensus 220 ~d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~--~i~VVgIPkTIDND 275 (337)
.|+..+++.|++.+++.+++.||-........ .++ ++.+...|+.+-.+
T Consensus 282 ~dl~~~l~~L~~~g~~~vlveGG~~l~~s~L~-------agLVDEl~l~iaP~llG~~ 332 (373)
T 2b3z_A 282 IQIPDVLKILAEEGIMSVYVEGGSAVHGSFVK-------EGCFQEIIFYFAPKLIGGT 332 (373)
T ss_dssp CCHHHHHHHHHHTTCCEEEEEECHHHHHHHHH-------HTCCSEEEEEEESBCCCCS
T ss_pred CCHHHHHHHHHHCCCCEEEEEEhHHHHHHHHh-------CCCceEEEEEEcceEecCC
Confidence 58899999999999999999999765554433 122 46788899988753
No 165
>2q02_A Putative cytoplasmic protein; structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; 2.40A {Salmonella typhimurium LT2} SCOP: c.1.15.4
Probab=24.22 E-value=3.3e+02 Score=23.14 Aligned_cols=18 Identities=22% Similarity=0.322 Sum_probs=12.0
Q ss_pred CchHHHHHHHHHhCCCEE
Q 019697 220 HDTNKIVDNIEDRGINQV 237 (337)
Q Consensus 220 ~d~~~iv~~L~~~~Id~L 237 (337)
.+.+++.+.++++++...
T Consensus 51 ~~~~~~~~~~~~~gl~~~ 68 (272)
T 2q02_A 51 LNYNQVRNLAEKYGLEIV 68 (272)
T ss_dssp CCHHHHHHHHHHTTCEEE
T ss_pred cCHHHHHHHHHHcCCeEE
Confidence 456677777777777653
No 166
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=24.12 E-value=3.4e+02 Score=23.24 Aligned_cols=88 Identities=15% Similarity=0.164 Sum_probs=48.8
Q ss_pred CeeEEEEccCCCCchhhHHHHHHHHHHhhhcCCcEEEEEccccccccCCCeeeCChhhHhchhccCCcceeccCCC-Cch
Q 019697 144 EVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGG-HDT 222 (337)
Q Consensus 144 ~~~iaIvt~GG~apGmNavIr~lv~~l~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~V~~~~~~GGS~LGTsR~~-~d~ 222 (337)
..+||++...-..|-...++.++-+.+.+ ++ .++. ++..+... ...
T Consensus 4 ~~~Ig~i~~~~~~~~~~~~~~g~~~~~~~-~g-~~~~-------------------------------~~~~~~~~~~~~ 50 (303)
T 3d02_A 4 EKTVVNISKVDGMPWFNRMGEGVVQAGKE-FN-LNAS-------------------------------QVGPSSTDAPQQ 50 (303)
T ss_dssp CEEEEEECSCSSCHHHHHHHHHHHHHHHH-TT-EEEE-------------------------------EECCSSSCHHHH
T ss_pred ceEEEEEeccCCChHHHHHHHHHHHHHHH-cC-CEEE-------------------------------EECCCCCCHHHH
Confidence 46899998655556666777777776653 21 1111 01111111 123
Q ss_pred HHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEe
Q 019697 223 NKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI 268 (337)
Q Consensus 223 ~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgI 268 (337)
.+.++.+...++|++++.+.+.. ....+.+.+.+.+ +++|.+
T Consensus 51 ~~~~~~l~~~~vdgiii~~~~~~--~~~~~~~~~~~~~--ipvV~~ 92 (303)
T 3d02_A 51 VKIIEDLIARKVDAITIVPNDAN--VLEPVFKKARDAG--IVVLTN 92 (303)
T ss_dssp HHHHHHHHHTTCSEEEECCSCHH--HHHHHHHHHHHTT--CEEEEE
T ss_pred HHHHHHHHHcCCCEEEEecCChH--HHHHHHHHHHHCC--CeEEEE
Confidence 45677777889999998876432 2222334444444 566655
No 167
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=23.88 E-value=2.6e+02 Score=24.02 Aligned_cols=30 Identities=3% Similarity=-0.188 Sum_probs=21.4
Q ss_pred CCeeEEEEccCCCCchhhHHHHHHHHHHhh
Q 019697 143 DEVRACIVTCGGLCPGINTVIREIVCGLSY 172 (337)
Q Consensus 143 ~~~~iaIvt~GG~apGmNavIr~lv~~l~~ 172 (337)
+..+||++...-.-|-...++.++-+.+.+
T Consensus 19 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~ 48 (293)
T 2iks_A 19 RTRSIGLVIPDLENTSYTRIANYLERQARQ 48 (293)
T ss_dssp CCCEEEEEESCSCSHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCcCcHHHHHHHHHHHHHHH
Confidence 345899998765666677777787777653
No 168
>3jr7_A Uncharacterized EGV family protein COG1307; structural genomics, PSI2, MCSG, protein struct initiative; HET: PG6; 2.00A {Ruminococcus gnavus}
Probab=23.73 E-value=2.3e+02 Score=26.16 Aligned_cols=69 Identities=14% Similarity=0.113 Sum_probs=46.6
Q ss_pred eeCChhhHhchhccCCcceeccCCCCchHHHHHHHHHhCCCEEEEEc----CCccHHHHHHHHHHHHH-c-CCceeEE
Q 019697 195 LTLSPKVVNDIHKRGGTILRTSRGGHDTNKIVDNIEDRGINQVYIIG----GDGTQKGAALIYKEVEK-R-GLQVAVA 266 (337)
Q Consensus 195 ~~L~~~~V~~~~~~GGS~LGTsR~~~d~~~iv~~L~~~~Id~LviIG----Gdgs~~~a~~L~e~~~~-~-~~~i~VV 266 (337)
++++++++-.....++...-||.- ......+.+++ +-+.+++|. =.||+.+|...++.+.+ + +.+|.||
T Consensus 60 ~di~~~efy~~~~~~~~~p~TSqp--s~~~~~~~f~~-~~~~Ii~i~iSs~LSGTy~sA~~Aa~~~~e~~~~~~I~Vi 134 (298)
T 3jr7_A 60 DSLKQEELLLKIAESTSCAKTSCP--SPERYMESYHC-DAERIYVVTLSAELSGSYNSAVLGKNLYEEEYGEKQIHVF 134 (298)
T ss_dssp TTSCHHHHHHHHHHCSSCCEEECC--CHHHHHHHHCS-SCSEEEEEESCTTTCSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CCCCHHHHHHHHHhCCCCceeCCC--CHHHHHHHHHh-cCCeEEEEECCcchhHHHHHHHHHHHHHHhhCCCCeEEEE
Confidence 568888888877777766667653 44555566655 567787773 57889999888776643 3 4455554
No 169
>3snr_A Extracellular ligand-binding receptor; structural genomics, APC102214, PSI-biology, midwest center structural genomics, MCSG; HET: MSE TYR PHE; 1.49A {Rhodopseudomonas palustris} PDB: 3uk0_A* 3t23_A* 3ukj_A* 4eyo_A* 4eyq_A* 3tx6_A* 4f8j_A* 4fb4_A*
Probab=23.73 E-value=1.7e+02 Score=25.73 Aligned_cols=64 Identities=13% Similarity=0.070 Sum_probs=42.7
Q ss_pred hhccCCcceeccC---CCCchHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeecc
Q 019697 205 IHKRGGTILRTSR---GGHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKT 271 (337)
Q Consensus 205 ~~~~GGS~LGTsR---~~~d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkT 271 (337)
+...|+.+..... +..++...++.+++.+.+++|+.+.+. .+..+.+.+++.|++++++++...
T Consensus 159 l~~~g~~v~~~~~~~~~~~~~~~~~~~l~~~~~dav~~~~~~~---~a~~~~~~~~~~g~~~p~i~~~g~ 225 (362)
T 3snr_A 159 GEAMGLKIVGEERFARPDTSVAGQALKLVAANPDAILVGASGT---AAALPQTTLRERGYNGLIYQTHGA 225 (362)
T ss_dssp HHHTTCEEEEEEEECTTCSCCHHHHHHHHHHCCSEEEEECCHH---HHHHHHHHHHHTTCCSEEEECGGG
T ss_pred HHHcCCEEEEEeecCCCCCCHHHHHHHHHhcCCCEEEEecCcc---hHHHHHHHHHHcCCCccEEeccCc
Confidence 4455666554322 345778888889999999998876332 344455667778998888776543
No 170
>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=23.61 E-value=3.3e+02 Score=22.94 Aligned_cols=23 Identities=9% Similarity=-0.073 Sum_probs=11.6
Q ss_pred HHHHHHHHHhCCCEEEEEcCCcc
Q 019697 223 NKIVDNIEDRGINQVYIIGGDGT 245 (337)
Q Consensus 223 ~~iv~~L~~~~Id~LviIGGdgs 245 (337)
.+.++.+...++|++++.+.+.+
T Consensus 45 ~~~~~~l~~~~vdgiI~~~~~~~ 67 (276)
T 2h0a_A 45 RYLENTTLAYLTDGLILASYDLT 67 (276)
T ss_dssp ---------CCCSEEEEESCCCC
T ss_pred HHHHHHHHhCCCCEEEEecCCCC
Confidence 35566677788999999887665
No 171
>2x5n_A SPRPN10, 26S proteasome regulatory subunit RPN10; nuclear protein, nucleus, ubiquitin; 1.30A {Schizosaccharomyces pombe}
Probab=23.26 E-value=1.3e+02 Score=25.72 Aligned_cols=50 Identities=16% Similarity=0.195 Sum_probs=32.7
Q ss_pred chHHHHHHHHHhC---CCE--EEEEcCCcc--HHHHHHHHHHHHHcCCceeEEEeec
Q 019697 221 DTNKIVDNIEDRG---INQ--VYIIGGDGT--QKGAALIYKEVEKRGLQVAVAGIPK 270 (337)
Q Consensus 221 d~~~iv~~L~~~~---Id~--LviIGGdgs--~~~a~~L~e~~~~~~~~i~VVgIPk 270 (337)
-++...+.|++.. -.. ++++.|+.+ -.....+++.+++.+.++.+|++=.
T Consensus 89 aL~~A~~~l~~~~~~~~~~riiil~~~~~~~~~~~~~~~a~~lk~~gi~v~~Ig~G~ 145 (192)
T 2x5n_A 89 GIQIAQLALKHRENKIQRQRIVAFVGSPIVEDEKNLIRLAKRMKKNNVAIDIIHIGE 145 (192)
T ss_dssp HHHHHHHHHHTCSCTTSEEEEEEEECSCCSSCHHHHHHHHHHHHHTTEEEEEEEESC
T ss_pred HHHHHHHHHHhccccCCCceEEEEEECCCCCCchhHHHHHHHHHHCCCEEEEEEeCC
Confidence 3566667776642 222 566655443 4556777888888899988888854
No 172
>4grd_A N5-CAIR mutase, phosphoribosylaminoimidazole carboxylase catalyti; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures; 1.85A {Burkholderia cenocepacia}
Probab=23.21 E-value=65 Score=28.29 Aligned_cols=55 Identities=18% Similarity=0.323 Sum_probs=39.1
Q ss_pred ceeccCCCCchHHHHHHHHHhCCCEEEEE-cCCccHHHHHHHHHHHHHcCCceeEEEeecccc
Q 019697 212 ILRTSRGGHDTNKIVDNIEDRGINQVYII-GGDGTQKGAALIYKEVEKRGLQVAVAGIPKTID 273 (337)
Q Consensus 212 ~LGTsR~~~d~~~iv~~L~~~~Id~LviI-GGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTID 273 (337)
+.+--|+.+.+.++++..++.+++.++.+ ||.+.+-++..= ....||||||-...
T Consensus 46 V~saHR~p~~l~~~~~~a~~~g~~ViIa~AG~aahLpgvvA~-------~t~~PVIgVPv~~~ 101 (173)
T 4grd_A 46 VVSAHRMPDEMFDYAEKARERGLRAIIAGAGGAAHLPGMLAA-------KTTVPVLGVPVASK 101 (173)
T ss_dssp ECCTTTSHHHHHHHHHHHTTTTCSEEEEEEESSCCHHHHHHH-------HCCSCEEEEEECCT
T ss_pred EEccccCHHHHHHHHHHHHhcCCeEEEEeccccccchhhhee-------cCCCCEEEEEcCCC
Confidence 45556777778888888888999977655 666666665432 14678999997543
No 173
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=23.08 E-value=3.6e+02 Score=23.11 Aligned_cols=30 Identities=10% Similarity=-0.047 Sum_probs=21.0
Q ss_pred CCeeEEEEccCCCCchhhHHHHHHHHHHhh
Q 019697 143 DEVRACIVTCGGLCPGINTVIREIVCGLSY 172 (337)
Q Consensus 143 ~~~~iaIvt~GG~apGmNavIr~lv~~l~~ 172 (337)
+..+||++...-.-|-...++.++.+.+.+
T Consensus 7 ~~~~Igvi~~~~~~~~~~~~~~gi~~~~~~ 36 (285)
T 3c3k_A 7 KTGMLLVMVSNIANPFCAAVVKGIEKTAEK 36 (285)
T ss_dssp CCCEEEEEESCTTSHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCchHHHHHHHHHHHHHH
Confidence 345899998765566667777777777653
No 174
>1u11_A PURE (N5-carboxyaminoimidazole ribonucleotide MUT; acidophIle, protein stability, lyase; HET: CIT; 1.55A {Acetobacter aceti} SCOP: c.23.8.1 PDB: 2fwj_A* 2fw1_A* 2fwb_A 2fwa_A 2fw9_A 2fw7_A 2fw6_A 2fwp_A* 2fwi_A* 2fw8_A
Probab=22.98 E-value=55 Score=28.97 Aligned_cols=55 Identities=18% Similarity=0.277 Sum_probs=35.8
Q ss_pred ceeccCCCCchHHHHHHHHHhCCCEEEEEc-CCccHHHHHHHHHHHHHcCCceeEEEeecccc
Q 019697 212 ILRTSRGGHDTNKIVDNIEDRGINQVYIIG-GDGTQKGAALIYKEVEKRGLQVAVAGIPKTID 273 (337)
Q Consensus 212 ~LGTsR~~~d~~~iv~~L~~~~Id~LviIG-Gdgs~~~a~~L~e~~~~~~~~i~VVgIPkTID 273 (337)
+.+--|+.+.+.++++..++.+++.++.+- +.+.+-++.. - ....||||||-...
T Consensus 55 V~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~aa~LpgvvA--~-----~t~~PVIgVP~~~~ 110 (182)
T 1u11_A 55 IVSAHRTPDRLADYARTAAERGLNVIIAGAGGAAHLPGMCA--A-----WTRLPVLGVPVESR 110 (182)
T ss_dssp ECCTTTCHHHHHHHHHHTTTTTCCEEEEEEESSCCHHHHHH--H-----HCSSCEEEEEECCT
T ss_pred EEcccCCHHHHHHHHHHHHhCCCcEEEEecCchhhhHHHHH--h-----ccCCCEEEeeCCCC
Confidence 344567767777888887888899766554 4444554432 1 14678999997543
No 175
>1o4v_A Phosphoribosylaminoimidazole mutase PURE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.77A {Thermotoga maritima} SCOP: c.23.8.1
Probab=22.95 E-value=55 Score=28.99 Aligned_cols=55 Identities=24% Similarity=0.354 Sum_probs=36.8
Q ss_pred ceeccCCCCchHHHHHHHHHhCCCEEEEE-cCCccHHHHHHHHHHHHHcCCceeEEEeecccc
Q 019697 212 ILRTSRGGHDTNKIVDNIEDRGINQVYII-GGDGTQKGAALIYKEVEKRGLQVAVAGIPKTID 273 (337)
Q Consensus 212 ~LGTsR~~~d~~~iv~~L~~~~Id~LviI-GGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTID 273 (337)
+.+--|+.+.+.+++++.++.+++.++.+ |+.+.+-++.. - ....||||||-...
T Consensus 47 V~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~aa~LpgvvA--~-----~t~~PVIgVP~~~~ 102 (183)
T 1o4v_A 47 IVSAHRTPDRMFEYAKNAEERGIEVIIAGAGGAAHLPGMVA--S-----ITHLPVIGVPVKTS 102 (183)
T ss_dssp ECCTTTCHHHHHHHHHHTTTTTCCEEEEEEESSCCHHHHHH--H-----HCSSCEEEEEECCT
T ss_pred EEcccCCHHHHHHHHHHHHhCCCcEEEEecCcccccHHHHH--h-----ccCCCEEEeeCCCC
Confidence 34456777778888888888889976655 44444555432 1 14688999997554
No 176
>2q8u_A Exonuclease, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.20A {Thermotoga maritima MSB8} PDB: 3thn_A
Probab=22.90 E-value=87 Score=28.62 Aligned_cols=18 Identities=22% Similarity=0.575 Sum_probs=10.5
Q ss_pred hHHHHHHHHHhCCCEEEE
Q 019697 222 TNKIVDNIEDRGINQVYI 239 (337)
Q Consensus 222 ~~~iv~~L~~~~Id~Lvi 239 (337)
++++++.+++.++|.+++
T Consensus 50 l~~lv~~~~~~~~D~vli 67 (336)
T 2q8u_A 50 LDKVVEEAEKREVDLILL 67 (336)
T ss_dssp HHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHHhCCCEEEE
Confidence 456666666666664333
No 177
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=22.89 E-value=56 Score=27.32 Aligned_cols=30 Identities=23% Similarity=0.338 Sum_probs=21.3
Q ss_pred CCeEEEEEecCC----CccHHH-HHHHHccCCCCC
Q 019697 307 ENGVGIVKLMGR----YSGFIS-MYATLASRDVVR 336 (337)
Q Consensus 307 ~~rV~iVEvMGR----~sG~LA-~~aaLAs~~~d~ 336 (337)
.+.+.+|.+.|. ..|.+| +..+|+...+++
T Consensus 100 ~~~~a~vsvvG~~m~~~~Gv~a~i~~aL~~~~InI 134 (167)
T 2re1_A 100 DDTVCKVSAVGLGMRSHVGVAAKIFRTLAEEGINI 134 (167)
T ss_dssp ESSEEEEEEECSSCTTCCCHHHHHHHHHHHTTCCC
T ss_pred cCCEEEEEEECCCcCCCcCHHHHHHHHHHHCCCcE
Confidence 456889999886 579887 455676666664
No 178
>3bdk_A D-mannonate dehydratase; xylose isomerase-like TIM barrel, lyase; HET: DNO; 2.50A {Streptococcus suis} PDB: 3ban_A* 3dbn_A* 3fvm_A
Probab=22.67 E-value=1.7e+02 Score=28.19 Aligned_cols=74 Identities=22% Similarity=0.296 Sum_probs=51.9
Q ss_pred HHHHHHHHh-CCCEEEEE------cCCccHHHHHHHHHHHHHcCCceeEEE-eeccccCCccccCcccCchhHHHHHHHH
Q 019697 224 KIVDNIEDR-GINQVYII------GGDGTQKGAALIYKEVEKRGLQVAVAG-IPKTIDNDIAVIDKSFGFDTAVEEAQRA 295 (337)
Q Consensus 224 ~iv~~L~~~-~Id~LviI------GGdgs~~~a~~L~e~~~~~~~~i~VVg-IPkTIDNDI~gtD~S~GfdTAv~~~~~~ 295 (337)
..++.+++. |++++.+- |.+-+.....+|.+.++++|+.+.++. +| +..|+... +-..+.+++.+.+.
T Consensus 34 ~~L~~i~q~~G~~gIe~~l~~~~~g~~w~~~~i~~lk~~l~~~GL~i~~i~s~~--~~~~i~~~--~~~r~~~ie~~k~~ 109 (386)
T 3bdk_A 34 VTLEEIKAIPGMQGIVTAVYDVPVGQAWPLENILELKKMVEEAGLEITVIESIP--VHEDIKQG--KPNRDALIENYKTS 109 (386)
T ss_dssp SCHHHHHTSTTCCEEEECCCSSCSSSCCCHHHHHHHHHHHHTTTCEEEEEECCC--CCHHHHTT--CTTHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCEEEeCCcccCCCCCCCHHHHHHHHHHHHHcCCEEEEEeccc--cccccccC--cHHHHHHHHHHHHH
Confidence 366778889 99998753 334566788899999999999987774 23 23344332 34477788888888
Q ss_pred HHHHHH
Q 019697 296 INAAHV 301 (337)
Q Consensus 296 i~~i~~ 301 (337)
|+.+..
T Consensus 110 i~~aa~ 115 (386)
T 3bdk_A 110 IRNVGA 115 (386)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 887753
No 179
>3ngf_A AP endonuclease, family 2; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 1.80A {Brucella melitensis biovar abortus} SCOP: c.1.15.0
Probab=21.89 E-value=3.7e+02 Score=23.12 Aligned_cols=50 Identities=14% Similarity=0.112 Sum_probs=37.1
Q ss_pred CCchHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeec
Q 019697 219 GHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPK 270 (337)
Q Consensus 219 ~~d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPk 270 (337)
..++++.++.+++.|++++=+.+-.+ ..+..+.+.++++|+++..++.|.
T Consensus 22 ~~~~~~~l~~~~~~G~~~vEl~~~~~--~~~~~~~~~l~~~gl~~~~~~~~~ 71 (269)
T 3ngf_A 22 EVPFLERFRLAAEAGFGGVEFLFPYD--FDADVIARELKQHNLTQVLFNMPP 71 (269)
T ss_dssp TSCHHHHHHHHHHTTCSEEECSCCTT--SCHHHHHHHHHHTTCEEEEEECCC
T ss_pred cCCHHHHHHHHHHcCCCEEEecCCcc--CCHHHHHHHHHHcCCcEEEEecCC
Confidence 35788899999999999887665332 246677788888888887777774
No 180
>2ywx_A Phosphoribosylaminoimidazole carboxylase catalyti; rossmann fold, structural genomics, NPPSFA; 2.31A {Methanocaldococcus jannaschii}
Probab=21.85 E-value=64 Score=27.89 Aligned_cols=10 Identities=20% Similarity=0.315 Sum_probs=8.3
Q ss_pred CceeEEEeec
Q 019697 261 LQVAVAGIPK 270 (337)
Q Consensus 261 ~~i~VVgIPk 270 (337)
...||||+|-
T Consensus 73 t~~PVIgVP~ 82 (157)
T 2ywx_A 73 TTKPVIAVPV 82 (157)
T ss_dssp CSSCEEEEEE
T ss_pred cCCCEEEecC
Confidence 4678999997
No 181
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=21.83 E-value=92 Score=26.75 Aligned_cols=18 Identities=17% Similarity=0.043 Sum_probs=12.1
Q ss_pred CeeEEEEccCCCCchhhH
Q 019697 144 EVRACIVTCGGLCPGINT 161 (337)
Q Consensus 144 ~~~iaIvt~GG~apGmNa 161 (337)
.-+|.+.+.+|+.=-+-.
T Consensus 88 ~~~vll~~~~gd~H~iG~ 105 (210)
T 1y80_A 88 VGKIVLGTVKGDLHDIGK 105 (210)
T ss_dssp CCEEEEEEBTTCCCCHHH
T ss_pred CCEEEEEeCCCcccHHHH
Confidence 347888888888744443
No 182
>2xij_A Methylmalonyl-COA mutase, mitochondrial; isomerase, organic aciduria, vitamin B12; HET: B12 5AD BTB; 1.95A {Homo sapiens} PDB: 2xiq_A* 3bic_A
Probab=21.81 E-value=2.8e+02 Score=29.50 Aligned_cols=100 Identities=17% Similarity=0.183 Sum_probs=60.5
Q ss_pred eeeCChhhHhchhccCCc---ceeccCCCCchHHHHHHHHHhCCCEEEEEcCCc-cHHHHHHHHHHHHHcCC-c-eeEEE
Q 019697 194 TLTLSPKVVNDIHKRGGT---ILRTSRGGHDTNKIVDNIEDRGINQVYIIGGDG-TQKGAALIYKEVEKRGL-Q-VAVAG 267 (337)
Q Consensus 194 ~~~L~~~~V~~~~~~GGS---~LGTsR~~~d~~~iv~~L~~~~Id~LviIGGdg-s~~~a~~L~e~~~~~~~-~-i~VVg 267 (337)
.-++..+.|......+|- .||. ....+++++..++.+.|.+.+-+=++ ++..+..+.+.+++.+. . .-++|
T Consensus 616 ~HdiG~~iVa~~l~~~GfeVi~lG~---~v~~eeiv~aA~e~~adiVglSsl~~~~~~~~~~vi~~Lr~~G~~dv~VivG 692 (762)
T 2xij_A 616 GHDRGAKVIATGFADLGFDVDIGPL---FQTPREVAQQAVDADVHAVGVSTLAAGHKTLVPELIKELNSLGRPDILVMCG 692 (762)
T ss_dssp CCCHHHHHHHHHHHHTTCEEEECCT---TCCHHHHHHHHHHTTCSEEEEEECSSCHHHHHHHHHHHHHHTTCTTSEEEEE
T ss_pred hhhHHHHHHHHHHHhCCeEEeeCCC---CCCHHHHHHHHHHcCCCEEEEeeecHHHHHHHHHHHHHHHhcCCCCCEEEEe
Confidence 344455555555555553 2221 13478999999999999888887664 46667888888888876 2 33556
Q ss_pred --eeccccCCc---cccCcccCchhHHHHHHHHHH
Q 019697 268 --IPKTIDNDI---AVIDKSFGFDTAVEEAQRAIN 297 (337)
Q Consensus 268 --IPkTIDNDI---~gtD~S~GfdTAv~~~~~~i~ 297 (337)
+|.+ |-+. .|.|.-|+-.|-+..+++.+.
T Consensus 693 G~~P~~-d~~~l~~~GaD~~f~pgtd~~e~~~~i~ 726 (762)
T 2xij_A 693 GVIPPQ-DYEFLFEVGVSNVFGPGTRIPKAAVQVL 726 (762)
T ss_dssp ESCCGG-GHHHHHHHTCCEEECTTCCHHHHHHHHH
T ss_pred CCCCcc-cHHHHHhCCCCEEeCCCCCHHHHHHHHH
Confidence 7866 2221 356655554444444434333
No 183
>1wdp_A Beta-amylase; (beta/alpha)8 barrel, hydrolase; 1.27A {Glycine max} SCOP: c.1.8.1 PDB: 1bfn_A* 1q6c_A 1wdr_A* 1v3i_A* 1v3h_A* 1q6d_A* 1q6g_A* 1wdq_A* 1wds_A* 1q6e_A* 1q6f_A* 2dqx_A 1byb_A* 1bya_A* 1byc_A* 1byd_A* 1uko_A 1ukp_A 1btc_A*
Probab=21.77 E-value=4.7e+02 Score=26.48 Aligned_cols=100 Identities=16% Similarity=0.208 Sum_probs=70.1
Q ss_pred hHHHHHHHHHhCCCEEEEE--------cCCc--cHHHHHHHHHHHHHcCCceeEE--------------Eee--cc----
Q 019697 222 TNKIVDNIEDRGINQVYII--------GGDG--TQKGAALIYKEVEKRGLQVAVA--------------GIP--KT---- 271 (337)
Q Consensus 222 ~~~iv~~L~~~~Id~LviI--------GGdg--s~~~a~~L~e~~~~~~~~i~VV--------------gIP--kT---- 271 (337)
++.=++.||..+++++.+= -|.+ -..+=.+|++-+++.|+++++| .|| .=
T Consensus 35 l~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~l~~mv~~~GLKlq~vmSFHqCGgNVGD~~~IPLP~WV~~~ 114 (495)
T 1wdp_A 35 LKEQLLQLRAAGVDGVMVDVWWGIIELKGPKQYDWRAYRSLLQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDI 114 (495)
T ss_dssp HHHHHHHHHHTTCCEEEEEEEHHHHTCSSTTCCCCHHHHHHHHHHHHTTCEEEEEEECSCBCCSTTCSCCBCSCHHHHHH
T ss_pred HHHHHHHHHHcCCCEEEEEeEeeeeccCCCCccCcHHHHHHHHHHHHcCCeEEEEEEeeecCCCCCCcccccCCHHHHHh
Confidence 4566788999999999873 2333 2566778888899999998887 344 32
Q ss_pred --ccCCccccCc---------ccCch--------hHHHHHHHHHHHHHHhhhcCC--CeEEEEEecCCCcc
Q 019697 272 --IDNDIAVIDK---------SFGFD--------TAVEEAQRAINAAHVEVESVE--NGVGIVKLMGRYSG 321 (337)
Q Consensus 272 --IDNDI~gtD~---------S~Gfd--------TAv~~~~~~i~~i~~~A~S~~--~rV~iVEvMGR~sG 321 (337)
=|.||..||. |+|.| |+++.+.+.+.+.+++-...- .-|-=|++=.+=||
T Consensus 115 ~~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTpiq~Y~Dfm~SFr~~F~~~~~~~~I~eI~VGlGP~G 185 (495)
T 1wdp_A 115 GESNHDIFYTNRSGTRNKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVGLGPAG 185 (495)
T ss_dssp HHHCGGGEEECTTCCEEEEEECGGGTTCCCBTTBCHHHHHHHHHHHHHHHTHHHHHTTCEEEEEECCSGGG
T ss_pred hccCCCcEEECCCCCccccccccccccccccCCCCHHHHHHHHHHHHHHHHHHhccCCeeEEEEeCccccc
Confidence 3458888884 88888 889999999999887765542 23444555444444
No 184
>4pga_A Glutaminase-asparaginase; bacterial amidohydrolase; 1.70A {Pseudomonas SP} SCOP: c.88.1.1 PDB: 1djp_A* 1djo_A* 3pga_1
Probab=21.54 E-value=1.6e+02 Score=28.07 Aligned_cols=60 Identities=13% Similarity=0.174 Sum_probs=39.2
Q ss_pred CCchHHHHHHHHH----hCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeeccccCCccccC
Q 019697 219 GHDTNKIVDNIED----RGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVID 280 (337)
Q Consensus 219 ~~d~~~iv~~L~~----~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTIDNDI~gtD 280 (337)
..++.++++.+++ .+.|+++|.=|-+||.-...+-...- +.+.|||..=+=.--+.+.+|
T Consensus 72 ~~~w~~la~~i~~~l~~~~~dGvVItHGTDTm~~TA~~L~~~l--~~~kPVVlTGa~rp~~~~~sD 135 (337)
T 4pga_A 72 NDDLLKLGKRVAELADSNDVDGIVITHGTDTLEETAYFLNLVQ--KTDKPIVVVGSMRPGTAMSAD 135 (337)
T ss_dssp HHHHHHHHHHHHHHHHCTTCSEEEEECCSTTHHHHHHHHHHHC--CCCSCEEEECCSSCTTSTTCS
T ss_pred HHHHHHHHHHHHHHhhccCCCeEEEECCCccHHHHHHHHHHHc--CCCCCEEEeCCCCCCCCCCch
Confidence 4567777777776 47999999999999976555444433 455667755443333444444
No 185
>1nu0_A Hypothetical protein YQGF; structural genomics, structure 2 function project, S2F, unknown function; 1.60A {Escherichia coli} SCOP: c.55.3.8 PDB: 1nmn_A 1ovq_A
Probab=21.45 E-value=71 Score=26.52 Aligned_cols=24 Identities=17% Similarity=0.347 Sum_probs=15.9
Q ss_pred HHHHHHHcCCceeEEEeeccccCC
Q 019697 252 IYKEVEKRGLQVAVAGIPKTIDND 275 (337)
Q Consensus 252 L~e~~~~~~~~i~VVgIPkTIDND 275 (337)
|.+.+++++...-|||+|++.|+.
T Consensus 45 l~~li~e~~v~~iVvGlP~~mdGt 68 (138)
T 1nu0_A 45 IERLLKEWQPDEIIVGLPLNMDGT 68 (138)
T ss_dssp HHHHHHHHCCSEEEEEEEECTTSC
T ss_pred HHHHHHHcCCCEEEEecccCCCcC
Confidence 334444445556699999998874
No 186
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=21.37 E-value=4.3e+02 Score=23.39 Aligned_cols=68 Identities=4% Similarity=0.081 Sum_probs=42.3
Q ss_pred CeeEEEEccCCCCchhhHHHHHHHHHHhhhcCCcEEEEEccccccccCCCeeeCChhhHhchhccCCcceeccCC-CCch
Q 019697 144 EVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRG-GHDT 222 (337)
Q Consensus 144 ~~~iaIvt~GG~apGmNavIr~lv~~l~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~V~~~~~~GGS~LGTsR~-~~d~ 222 (337)
..+||++...-.-|-...++.++-+.+.+ ++ .+++ +..+.. .+..
T Consensus 58 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~--------------------------------~~~~~~~~~~~ 103 (340)
T 1qpz_A 58 TKSIGLLATSSEAAYFAEIIEAVEKNCFQ-KG-YTLI--------------------------------LGNAWNNLEKQ 103 (340)
T ss_dssp CSEEEEEESCSCSHHHHHHHHHHHHHHHH-TT-CEEE--------------------------------EEECTTCHHHH
T ss_pred CCEEEEEeCCCCChHHHHHHHHHHHHHHH-cC-CEEE--------------------------------EEeCCCCHHHH
Confidence 35899998665566667777787777653 22 2221 111111 1123
Q ss_pred HHHHHHHHHhCCCEEEEEcCCcc
Q 019697 223 NKIVDNIEDRGINQVYIIGGDGT 245 (337)
Q Consensus 223 ~~iv~~L~~~~Id~LviIGGdgs 245 (337)
.+.++.|...++|++++.+.+.+
T Consensus 104 ~~~~~~l~~~~vdgiI~~~~~~~ 126 (340)
T 1qpz_A 104 RAYLSMMAQKRVDGLLVMCSEYP 126 (340)
T ss_dssp HHHHHHHHHTTCSEEEECCSCCC
T ss_pred HHHHHHHHcCCCCEEEEeCCCCC
Confidence 45678888899999999987754
No 187
>1zq1_A Glutamyl-tRNA(Gln) amidotransferase subunit D; X-RAY, 3D structure, asparaginase 1 family, GATD subfamily, lyase; 3.00A {Pyrococcus abyssi} SCOP: b.38.3.1 c.88.1.1
Probab=21.33 E-value=3.2e+02 Score=27.01 Aligned_cols=61 Identities=18% Similarity=0.092 Sum_probs=39.1
Q ss_pred CCchHHHHHHHHHh---CCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEeeccccCCccccC
Q 019697 219 GHDTNKIVDNIEDR---GINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVID 280 (337)
Q Consensus 219 ~~d~~~iv~~L~~~---~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIPkTIDNDI~gtD 280 (337)
..++.++++.++++ +.|+++|.=|-+||.-...+-...-+ +.+.|||..=+=.--|-+.+|
T Consensus 151 p~~w~~La~~I~~~~~~~~DG~VItHGTDTMeeTA~~Lsl~l~-~~~KPVVlTGAqrP~~~~~sD 214 (438)
T 1zq1_A 151 PKHWVKIAHEVAKALNSGDYGVVVAHGTDTMGYTAAALSFMLR-NLGKPVVLVGAQRSSDRPSSD 214 (438)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEEEECCSSSHHHHHHHHHHHEE-SCCSCEEEECCSSCTTSTTCS
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEecCchhHHHHHHHHHHHHh-CCCCCEEEeCCCCCCCCCCcc
Confidence 45666776666665 89999999999999765555454321 455667765444444444444
No 188
>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp}
Probab=20.77 E-value=2.5e+02 Score=24.10 Aligned_cols=68 Identities=7% Similarity=0.114 Sum_probs=41.7
Q ss_pred CCeeEEEEccCCCCchhhHHHHHHHHHHhhhcCCcEEEEEccccccccCCCeeeCChhhHhchhccCCcceeccCC-CCc
Q 019697 143 DEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRG-GHD 221 (337)
Q Consensus 143 ~~~~iaIvt~GG~apGmNavIr~lv~~l~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~V~~~~~~GGS~LGTsR~-~~d 221 (337)
+..+||++... ..|-...++.++...+.+ ++ .++. +..+.. .+.
T Consensus 7 ~~~~Igvi~~~-~~~~~~~~~~gi~~~~~~-~g-~~~~--------------------------------~~~~~~~~~~ 51 (288)
T 2qu7_A 7 RSNIIAFIVPD-QNPFFTEVLTEISHECQK-HH-LHVA--------------------------------VASSEENEDK 51 (288)
T ss_dssp CEEEEEEEESS-CCHHHHHHHHHHHHHHGG-GT-CEEE--------------------------------EEECTTCHHH
T ss_pred CCCEEEEEECC-CCchHHHHHHHHHHHHHH-CC-CEEE--------------------------------EEeCCCCHHH
Confidence 34589999977 667677777777776653 22 1211 111111 112
Q ss_pred hHHHHHHHHHhCCCEEEEEcCCcc
Q 019697 222 TNKIVDNIEDRGINQVYIIGGDGT 245 (337)
Q Consensus 222 ~~~iv~~L~~~~Id~LviIGGdgs 245 (337)
..+.++.+...++|++++.+.+.+
T Consensus 52 ~~~~~~~l~~~~vdgiI~~~~~~~ 75 (288)
T 2qu7_A 52 QQDLIETFVSQNVSAIILVPVKSK 75 (288)
T ss_dssp HHHHHHHHHHTTEEEEEECCSSSC
T ss_pred HHHHHHHHHHcCccEEEEecCCCC
Confidence 345677778889999999887654
No 189
>3h5l_A Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi}
Probab=20.76 E-value=1.5e+02 Score=27.26 Aligned_cols=64 Identities=8% Similarity=-0.115 Sum_probs=37.8
Q ss_pred chhccCCcceeccCC---CCchHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHHcCCceeEEEee
Q 019697 204 DIHKRGGTILRTSRG---GHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIP 269 (337)
Q Consensus 204 ~~~~~GGS~LGTsR~---~~d~~~iv~~L~~~~Id~LviIGGdgs~~~a~~L~e~~~~~~~~i~VVgIP 269 (337)
.+...|+.+....+. ..|+..++..|++.+.|.+|+.|-.+. .+..+.+.+++.+++..+++..
T Consensus 187 ~~~~~g~~vv~~~~~~~~~~d~~~~l~~i~~~~~d~v~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~ 253 (419)
T 3h5l_A 187 GAGEYGYDVSLFETVAIPVSDWGPTLAKLRADPPAVIVVTHFYPQ--DQALFMNQFMTDPTNSLVYLQY 253 (419)
T ss_dssp HGGGGTCEEEEEEECCSSCSCCHHHHHHHHHSCCSEEEECCCCHH--HHHHHHHHHTTSCCSCEEEECS
T ss_pred HHHHcCCeEEEEecCCCCCccHHHHHHHHHhcCCCEEEEccccCc--hHHHHHHHHHHcCCCceEEecC
Confidence 344556666554432 357778888888888887766543221 2344555556667766666543
No 190
>3tva_A Xylose isomerase domain protein TIM barrel; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 2.15A {Planctomyces limnophilus}
Probab=20.01 E-value=2e+02 Score=25.03 Aligned_cols=50 Identities=14% Similarity=0.098 Sum_probs=38.0
Q ss_pred CCchHHHHHHHHHhCCCEEEEEcCCcc---HHHHHHHHHHHHHcCCceeEEEe
Q 019697 219 GHDTNKIVDNIEDRGINQVYIIGGDGT---QKGAALIYKEVEKRGLQVAVAGI 268 (337)
Q Consensus 219 ~~d~~~iv~~L~~~~Id~LviIGGdgs---~~~a~~L~e~~~~~~~~i~VVgI 268 (337)
..++++.++.+++.|++++=+-..... -..+..+.+.++++|+++..+..
T Consensus 20 ~~~l~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~ 72 (290)
T 3tva_A 20 DAGLGVHLEVAQDLKVPTVQVHAPHPHTRTREHAQAFRAKCDAAGIQVTVIFG 72 (290)
T ss_dssp SSSSSBCHHHHHHTTCSEEEEECCCGGGCSHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CCCHHHHHHHHHHcCCCEEEecCCCCCcCCHHHHHHHHHHHHHcCCEEEEEee
Confidence 356778899999999999988765432 44577788888888988766644
Done!