RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 019697
(337 letters)
>gnl|CDD|178178 PLN02564, PLN02564, 6-phosphofructokinase.
Length = 484
Score = 585 bits (1510), Expect = 0.0
Identities = 225/280 (80%), Positives = 255/280 (91%), Gaps = 2/280 (0%)
Query: 60 RSSNQKVHN--DGFVLEDVPHLTNFLPDLPSYPNPLKKSQAYAVVKQTFVSPEDAVAQNI 117
SS K+ G+VLEDVPHLT++LPDLP+YPNPL+ + AY+VVKQ FV+ +D VAQ I
Sbjct: 1 GSSKPKIVTGDAGYVLEDVPHLTDYLPDLPTYPNPLQDNPAYSVVKQYFVNEDDTVAQKI 60
Query: 118 VIQKDSPRGVHFRRAGPREKVYFKSDEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVD 177
V+ KDSPRG HFRRAGPR+KVYF+SDEVRACIVTCGGLCPG+NTVIREIVCGLSYMYGV
Sbjct: 61 VVHKDSPRGTHFRRAGPRQKVYFESDEVRACIVTCGGLCPGLNTVIREIVCGLSYMYGVT 120
Query: 178 EILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTNKIVDNIEDRGINQV 237
ILGI+GGYRGFYS+NT+ L+PKVVNDIHKRGGTIL TSRGGHDT+KIVD+I+DRGINQV
Sbjct: 121 RILGIDGGYRGFYSRNTIPLTPKVVNDIHKRGGTILGTSRGGHDTSKIVDSIQDRGINQV 180
Query: 238 YIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAIN 297
YIIGGDGTQKGA++IY+E+ +RGL+VAVAGIPKTIDNDI VIDKSFGFDTAVEEAQRAIN
Sbjct: 181 YIIGGDGTQKGASVIYEEIRRRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAIN 240
Query: 298 AAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDVVRC 337
AAHVE ESVENG+G+VKLMGRYSGFI+MYATLASRDV C
Sbjct: 241 AAHVEAESVENGIGLVKLMGRYSGFIAMYATLASRDVDCC 280
>gnl|CDD|235869 PRK06830, PRK06830, diphosphate--fructose-6-phosphate
1-phosphotransferase; Provisional.
Length = 443
Score = 327 bits (841), Expect = e-110
Identities = 134/254 (52%), Positives = 171/254 (67%), Gaps = 10/254 (3%)
Query: 90 PNPLKKSQAYAVVKQTFVSPEDAVAQNIVIQKDSPRGV------HFRRAGPREKVYFKSD 143
P+PL S A A FVS D V ++ + F +AGPREK+YF
Sbjct: 21 PSPLIYSLA-AGDTTHFVSDSDRVLFDVSLSLIKEEDAPGTEPPSFEKAGPREKIYFDPS 79
Query: 144 EVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGF---YSKNTLTLSPK 200
+V+A IVTCGGLCPG+N VIR IV L + YGV ILGI GY+G Y + + L+P+
Sbjct: 80 KVKAAIVTCGGLCPGLNDVIRAIVLELHHHYGVRRILGIRYGYQGLIPRYGHDPVELTPE 139
Query: 201 VVNDIHKRGGTILRTSRGGHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRG 260
VV DIH+ GGTIL +SRG D +IVD +E IN +++IGGDGT +GA+ I +E+E+RG
Sbjct: 140 VVADIHEFGGTILGSSRGPQDPEEIVDTLERMNINILFVIGGDGTLRGASAIAEEIERRG 199
Query: 261 LQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVESVENGVGIVKLMGRYS 320
L+++V GIPKTIDNDI I KSFGF+TAVE+A AI AHVE NG+G+VKLMGR+S
Sbjct: 200 LKISVIGIPKTIDNDINFIQKSFGFETAVEKATEAIRCAHVEANGAPNGIGLVKLMGRHS 259
Query: 321 GFISMYATLASRDV 334
GFI+ YA LAS+DV
Sbjct: 260 GFIAAYAALASKDV 273
>gnl|CDD|185539 PTZ00286, PTZ00286, 6-phospho-1-fructokinase; Provisional.
Length = 459
Score = 324 bits (832), Expect = e-108
Identities = 137/278 (49%), Positives = 175/278 (62%), Gaps = 12/278 (4%)
Query: 72 VLEDVPHLTNFLPD--LPSYPNPLKKSQAYAVV--------KQTFVSPEDAVAQNIVIQK 121
+E V +L LPD LPS NP V ++ FV +
Sbjct: 3 EIERVNNLIIDLPDAPLPSVVNPDLGECNLRGVFGGNGFLPREAFVDTNSYILSTPRFGP 62
Query: 122 D--SPRGVHFRRAGPREKVYFKSDEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEI 179
D + RAGPR+ +YF EV+A IVTCGGLCPG+N VIRE+V L YGV I
Sbjct: 63 DDVIVNTKRWLRAGPRKHLYFNPKEVKAGIVTCGGLCPGLNVVIRELVMNLINNYGVKTI 122
Query: 180 LGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTNKIVDNIEDRGINQVYI 239
G + GY+G Y ++ + L PK V IH+ GGTIL +SRGG D +VD + GIN ++
Sbjct: 123 YGAKYGYKGLYKEDWIKLDPKDVKTIHRLGGTILGSSRGGFDPKVMVDTLIRHGINILFT 182
Query: 240 IGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAA 299
+GGDGT +GA IYKE+ +R L ++V GIPKTIDNDI +ID+SFGF TAVEEAQ AI AA
Sbjct: 183 LGGDGTHRGALAIYKELRRRKLNISVVGIPKTIDNDIPIIDESFGFQTAVEEAQNAIRAA 242
Query: 300 HVEVESVENGVGIVKLMGRYSGFISMYATLASRDVVRC 337
+VE +S +NGVGIVKLMGR SGFI+++A++AS DV C
Sbjct: 243 YVEAKSAKNGVGIVKLMGRDSGFIALHASVASADVNVC 280
>gnl|CDD|178472 PLN02884, PLN02884, 6-phosphofructokinase.
Length = 411
Score = 280 bits (717), Expect = 4e-92
Identities = 124/209 (59%), Positives = 162/209 (77%), Gaps = 3/209 (1%)
Query: 131 RAGPREKVYFKSDEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFY 190
RAGPR+K+YF+ +EV+A IVTCGGLCPG+N VIR+IV L +YGV I+GI GYRGF+
Sbjct: 40 RAGPRKKIYFEPEEVKAAIVTCGGLCPGLNDVIRQIVFTLE-IYGVKNIVGIPFGYRGFF 98
Query: 191 SKN--TLTLSPKVVNDIHKRGGTILRTSRGGHDTNKIVDNIEDRGINQVYIIGGDGTQKG 248
K + LS KVV +IH GG++L SRGG T+ IVD+IE RGIN ++++GG+GT G
Sbjct: 99 EKGLSEMPLSRKVVQNIHLSGGSLLGVSRGGAKTSDIVDSIEARGINMLFVLGGNGTHAG 158
Query: 249 AALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVESVEN 308
A I+ E KR ++V+V G+PKTIDNDI ++DK+FGFDTAVEEAQRAIN+A++E S +
Sbjct: 159 ANAIHNECRKRKMKVSVVGVPKTIDNDILLMDKTFGFDTAVEEAQRAINSAYIEAHSAYH 218
Query: 309 GVGIVKLMGRYSGFISMYATLASRDVVRC 337
G+G+VKLMGR SGFI+M+A+LAS V C
Sbjct: 219 GIGLVKLMGRSSGFIAMHASLASGQVDIC 247
>gnl|CDD|223283 COG0205, PfkA, 6-phosphofructokinase [Carbohydrate transport and
metabolism].
Length = 347
Score = 169 bits (430), Expect = 8e-50
Identities = 69/191 (36%), Positives = 109/191 (57%), Gaps = 13/191 (6%)
Query: 146 RACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDI 205
+ I+T GG PG+N VIR +V + + E+ GI GY G + L+ + V+D+
Sbjct: 4 KIAILTSGGDAPGMNAVIRAVV--RTAIKEGLEVFGIYNGYLGLLEGDIKPLTREDVDDL 61
Query: 206 HKRGGTILRTSRGGHDT-----NKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRG 260
RGGT L ++R +N++ GI+ + +IGGDG+ GAAL+ +E
Sbjct: 62 INRGGTFLGSARFPEFKTEEGRKVAAENLKKLGIDALVVIGGDGSYTGAALLAEE----- 116
Query: 261 LQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVESVENGVGIVKLMGRYS 320
+ V G+PKTIDNDI+ D + GFDTA+E A AI+ + S + IV++MGR++
Sbjct: 117 GGIPVVGVPKTIDNDISGTDFTIGFDTALETAVEAIDNLR-DTASSHERIFIVEVMGRHA 175
Query: 321 GFISMYATLAS 331
G++++ A LA+
Sbjct: 176 GWLALAAGLAT 186
>gnl|CDD|235111 PRK03202, PRK03202, 6-phosphofructokinase; Provisional.
Length = 320
Score = 149 bits (380), Expect = 1e-42
Identities = 70/189 (37%), Positives = 106/189 (56%), Gaps = 16/189 (8%)
Query: 149 IVTCGGLCPGINTVIREIV-CGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHK 207
++T GG PG+N IR +V +S G E+ GI GY G + + L K V+DI
Sbjct: 6 VLTSGGDAPGMNAAIRAVVRTAISE--G-LEVYGIYDGYAGLLEGDIVKLDLKSVSDIIN 62
Query: 208 RGGTILRTSRGGHDTN-----KIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQ 262
RGGTIL ++R + K ++N++ GI+ + +IGGDG+ GA + +
Sbjct: 63 RGGTILGSARFPEFKDEEGRAKAIENLKKLGIDALVVIGGDGSYMGAKRLTEH------G 116
Query: 263 VAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVESVENGVGIVKLMGRYSGF 322
+ V G+P TIDNDIA D + GFDTA+ A AI+ S E V IV++MGR++G
Sbjct: 117 IPVIGLPGTIDNDIAGTDYTIGFDTALNTAVEAIDRLRDTASSHER-VFIVEVMGRHAGD 175
Query: 323 ISMYATLAS 331
++++A +A
Sbjct: 176 LALHAGIAG 184
>gnl|CDD|233887 TIGR02483, PFK_mixed, phosphofructokinase. Members of this family
that are characterized, save one, are
phosphofructokinases dependent on pyrophosphate (EC
2.7.1.90) rather than ATP (EC 2.7.1.11). The exception
is one of three phosphofructokinases from Streptomyces
coelicolor. Family members are both bacterial and
archaeal [Energy metabolism,
Glycolysis/gluconeogenesis].
Length = 324
Score = 148 bits (377), Expect = 2e-42
Identities = 76/189 (40%), Positives = 113/189 (59%), Gaps = 15/189 (7%)
Query: 149 IVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTL-SPKVVNDIHK 207
++T GG CPG+N VIR +V YG E++GI G+RG +T+ L + V I
Sbjct: 4 VLTGGGDCPGLNAVIRGVVRRAIAEYG-WEVIGIRDGWRGLLEGDTVPLLDLEDVRGILP 62
Query: 208 RGGTILRTSRGGHDTN------KIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGL 261
RGGTIL +SR KIV N+++ G++ + IGGDGT A + + +GL
Sbjct: 63 RGGTILGSSRTNPFKYEEDGDDKIVANLKELGLDALIAIGGDGTLGIA----RRLADKGL 118
Query: 262 QVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVESVENGVGIVKLMGRYSG 321
V G+PKTIDND+ D +FGFDTAVE A A++ H ES + V +V++MGR++G
Sbjct: 119 PVV--GVPKTIDNDLEATDYTFGFDTAVEIATEALDRLHTTAES-HHRVMVVEVMGRHAG 175
Query: 322 FISMYATLA 330
+I++++ +A
Sbjct: 176 WIALHSGIA 184
>gnl|CDD|238216 cd00363, PFK, Phosphofructokinase, a key regulatory enzyme in
glycolysis, catalyzes the phosphorylation of
fructose-6-phosphate to fructose-1,6-biphosphate. The
members belong to PFK family that includes ATP- and
pyrophosphate (PPi)- dependent phosphofructokinases.
Some members evolved by gene duplication and thus have a
large C-terminal/N-terminal extension comprising a
second PFK domain. Generally, ATP-PFKs are allosteric
homotetramers, and PPi-PFKs are dimeric and
nonallosteric except for plant PPi-PFKs which are
allosteric heterotetramers.
Length = 338
Score = 119 bits (301), Expect = 3e-31
Identities = 66/188 (35%), Positives = 100/188 (53%), Gaps = 8/188 (4%)
Query: 149 IVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKR 208
++T GG PG+N IR +V G+ E+ GI GY G + L + V+DI R
Sbjct: 5 VLTSGGDAPGMNAAIRGVVRSAIA-EGL-EVYGIYEGYAGLVEGDIKELDWESVSDIINR 62
Query: 209 GGTILRTSRGGHDT-----NKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQV 263
GGTI+ ++R K +N++ GI+ + +IGGDG+ GA L+ +E +
Sbjct: 63 GGTIIGSARCKEFRTEEGRAKAAENLKKHGIDALVVIGGDGSYTGADLLTEEWPSKYQGF 122
Query: 264 AVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVESVENGVGIVKLMGRYSGFI 323
V G+P TIDNDI D + GFDTA++ AI+ S +V++MGR+ G I
Sbjct: 123 NVIGLPGTIDNDIKGTDYTIGFDTALKTIVEAIDRIRDTASS-HQRTFVVEVMGRHCGDI 181
Query: 324 SMYATLAS 331
++ A LA+
Sbjct: 182 ALEAGLAT 189
>gnl|CDD|213713 TIGR02482, PFKA_ATP, 6-phosphofructokinase. 6-phosphofructokinase
(EC 2.7.1.11) catalyzes the addition of phosphate from
ATP to fructose 6-phosphate to give fructose
1,6-bisphosphate. This represents a key control step in
glycolysis. This model hits bacterial ATP-dependent
6-phosphofructokinases which lack a beta-hairpin loop
present in TIGR02483 family members. TIGR02483 contains
members that are ATP-dependent as well as members that
are pyrophosphate-dependent. TIGR02477 represents the
pyrophosphate-dependent phosphofructokinase,
diphosphate--fructose-6-phosphate 1-phosphotransferase
(EC 2.7.1.90) [Energy metabolism,
Glycolysis/gluconeogenesis].
Length = 301
Score = 116 bits (292), Expect = 4e-30
Identities = 69/188 (36%), Positives = 103/188 (54%), Gaps = 13/188 (6%)
Query: 149 IVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKR 208
I+T GG PG+N IR +V Y +G E+ GI GY+G + L K V+ I R
Sbjct: 4 ILTSGGDAPGMNAAIRAVVRTAIY-HGF-EVYGIRRGYKGLINGKIEPLESKNVSGIIHR 61
Query: 209 GGTILRTSRGGHDT-----NKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQV 263
GGTIL T+R K V+N++ GI + +IGGDG+ GA +Y+E +
Sbjct: 62 GGTILGTARCPEFKTEEVREKAVENLKKLGIEGLVVIGGDGSYTGAQKLYEE-----GGI 116
Query: 264 AVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVESVENGVGIVKLMGRYSGFI 323
V G+P TIDNDI D + GFDTA+ A++ S E ++++MGR++G +
Sbjct: 117 PVIGLPGTIDNDIPGTDYTIGFDTALNTIIDAVDKIRDTATSHER-AFVIEVMGRHAGDL 175
Query: 324 SMYATLAS 331
++YA +A+
Sbjct: 176 ALYAGIAT 183
>gnl|CDD|238388 cd00763, Bacterial_PFK, Phosphofructokinase, a key regulatory
enzyme in glycolysis, catalyzes the phosphorylation of
fructose-6-phosphate to fructose-1,6-biphosphate. The
members belong to a subfamily of the PFKA family
(cd00363) and include bacterial ATP-dependent
phosphofructokinases. These are allosrterically
regulated homotetramers; the subunits are of about 320
amino acids.
Length = 317
Score = 104 bits (262), Expect = 7e-26
Identities = 63/190 (33%), Positives = 99/190 (52%), Gaps = 14/190 (7%)
Query: 146 RACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDI 205
R ++T GG PG+N IR +V + G+ E+ GI GY G + + + L V+DI
Sbjct: 2 RIGVLTSGGDAPGMNAAIRGVV-RSAIAEGL-EVYGIRDGYAGLIAGDIVPLDRYSVSDI 59
Query: 206 HKRGGTILRTSRGGH--DTN---KIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRG 260
RGGT L ++R D K ++ ++ GI+ + +IGGDG+ GA + +
Sbjct: 60 INRGGTFLGSARFPEFKDEEGQAKAIEQLKKHGIDALVVIGGDGSYMGAMRLTEH----- 114
Query: 261 LQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVESVENGVGIVKLMGRYS 320
G+P TIDNDI D + GFDTA+ AI+ + S + +V++MGR+
Sbjct: 115 -GFPCVGLPGTIDNDIPGTDYTIGFDTALNTVVEAIDRIR-DTSSSHQRISVVEVMGRHC 172
Query: 321 GFISMYATLA 330
G I++ A +A
Sbjct: 173 GDIALAAGIA 182
>gnl|CDD|109425 pfam00365, PFK, Phosphofructokinase.
Length = 279
Score = 100 bits (252), Expect = 1e-24
Identities = 64/188 (34%), Positives = 98/188 (52%), Gaps = 13/188 (6%)
Query: 149 IVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKR 208
++T GG PG+N IR +V + G+ E+ GI GY G + N L + V+DI +R
Sbjct: 5 VLTSGGDAPGMNAAIRAVV-RSAIAEGL-EVYGIYEGYAGLVAGNIKQLDWESVSDIIQR 62
Query: 209 GGTILRTSRGGHDTN-----KIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQV 263
GGT + ++R K +N++ GI+ + +IGGDG+ GA L+ E G
Sbjct: 63 GGTFIGSARCPEFREREGRLKAAENLKKHGIDALVVIGGDGSYTGADLLTSE---HGFNC 119
Query: 264 AVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVESVENGVGIVKLMGRYSGFI 323
G+P TIDNDI D + GFDTA+ AI+ S +V++MGR+ G +
Sbjct: 120 V--GLPGTIDNDICGTDYTIGFDTALNTIVEAIDRIRDTASS-HQRTFVVEVMGRHCGDL 176
Query: 324 SMYATLAS 331
++ A +A
Sbjct: 177 ALVAGIAG 184
>gnl|CDD|184487 PRK14071, PRK14071, 6-phosphofructokinase; Provisional.
Length = 360
Score = 97.4 bits (243), Expect = 6e-23
Identities = 68/200 (34%), Positives = 106/200 (53%), Gaps = 22/200 (11%)
Query: 146 RACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSK--NTLTLSPKVVN 203
R I+T GG C G+N VIR +V YG E++GI +G ++ + L V+
Sbjct: 6 RIGILTSGGDCAGLNAVIRAVVHRARGTYGW-EVIGIRDATQGLMARPPQYIELDLDQVD 64
Query: 204 DIHKRGGTILRTSRGGHD-------------TNKIVDNIEDRGINQVYIIGGDGTQKGAA 250
D+ + GGTIL T+ G + +I+D G++ + IGGDG+ A
Sbjct: 65 DLLRMGGTILGTTNKGDPFAFPMPDGSLRDRSQEIIDGYHSLGLDALIGIGGDGS---LA 121
Query: 251 LIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVESVENGV 310
++ + ++ G+ + GIPKTIDND+ + S GFDTAV A A++ H S N V
Sbjct: 122 ILRRLAQQGGINLV--GIPKTIDNDVGATEVSIGFDTAVNIATEALDRLHFTAAS-HNRV 178
Query: 311 GIVKLMGRYSGFISMYATLA 330
I+++MGR +G I++ A +A
Sbjct: 179 MILEVMGRDAGHIALAAGIA 198
>gnl|CDD|240345 PTZ00287, PTZ00287, 6-phosphofructokinase; Provisional.
Length = 1419
Score = 94.7 bits (235), Expect = 2e-21
Identities = 63/191 (32%), Positives = 99/191 (51%), Gaps = 7/191 (3%)
Query: 149 IVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKR 208
I+ GG PG + VI I +++G GG G YSKN +T++ ++N
Sbjct: 182 IILSGGPAPGGHNVISGIYDYAKRYNEQSQVIGFLGGIDGLYSKNYVTITDSLMNRFRNL 241
Query: 209 GGTILRTSRGGHDTNK----IVDNIEDR-GINQVYIIGGDGTQKGAALIYKEVEKRGLQV 263
GG + S G NK ++NI + +N + IIGGDG+ AALI + +R + +
Sbjct: 242 GGFNMLWSGRGKVRNKDDLIAIENIVAKLKLNGLVIIGGDGSNSNAALISEYFAERQIPI 301
Query: 264 AVAGIPKTIDNDIA--VIDKSFGFDTAVEEAQRAINAAHVEVESVENGVGIVKLMGRYSG 321
++ GIPKTID D+ I+ SFGFDTA + I +V++ N +V++MGR +
Sbjct: 302 SIIGIPKTIDGDLKSEAIEISFGFDTATKTYSEVIGNLCTDVKTGHNVYHVVRVMGRSAS 361
Query: 322 FISMYATLASR 332
+ + L +R
Sbjct: 362 HVVLECALQTR 372
Score = 34.6 bits (79), Expect = 0.081
Identities = 24/98 (24%), Positives = 49/98 (50%), Gaps = 2/98 (2%)
Query: 223 NKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDI--AVID 280
NK+ + + + +N + + G + T AAL+ + ++ + +V GIP T N++ +I+
Sbjct: 918 NKVCETVTNLQLNGLVMPGSNVTITEAALLAEYFLEKKIPTSVVGIPLTGSNNLIHELIE 977
Query: 281 KSFGFDTAVEEAQRAINAAHVEVESVENGVGIVKLMGR 318
GFD++ + I + S+ ++LMGR
Sbjct: 978 TCVGFDSSTKVYASLIGNVLTDAVSMPKYWHFIRLMGR 1015
>gnl|CDD|185647 PTZ00468, PTZ00468, phosphofructokinase family protein;
Provisional.
Length = 1328
Score = 77.7 bits (191), Expect = 1e-15
Identities = 56/194 (28%), Positives = 95/194 (48%), Gaps = 7/194 (3%)
Query: 146 RACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDI 205
R +V GG G + VI ++ + ++ G GG G YS+ L+ +N I
Sbjct: 104 RIGVVLSGGQASGGHNVIAGLMSYIKLCNQSSQLFGFLGGPEGVYSERYRELTEDDINGI 163
Query: 206 HKRGG-TILRTSRGGHDTNKIVD---NI-EDRGINQVYIIGGDGTQKGAALIYKEVEKRG 260
+GG I+ + R +T + + I E ++ + +IGGD + AA++ + ++
Sbjct: 164 LNQGGFNIICSGRHKIETEEQMRASLEICEKLKLHGLVVIGGDDSNTNAAVLAEYFKRNS 223
Query: 261 LQVAVAGIPKTIDNDIA--VIDKSFGFDTAVEEAQRAINAAHVEVESVENGVGIVKLMGR 318
V G PKTID D+ VI+ SFG+DTAV+ I + +++ G V+LMGR
Sbjct: 224 SSTVVVGCPKTIDGDLKNEVIETSFGYDTAVKTYSEQIGSIMDAIKTEGYGYYFVRLMGR 283
Query: 319 YSGFISMYATLASR 332
+ I++ L +R
Sbjct: 284 SASHITLECGLQTR 297
>gnl|CDD|131530 TIGR02477, PFKA_PPi, diphosphate--fructose-6-phosphate
1-phosphotransferase. Diphosphate--fructose-6-phosphate
1-phosphotransferase catalyzes the addition of phosphate
from diphosphate (PPi) to fructose 6-phosphate to give
fructose 1,6-bisphosphate (EC 2.7.1.90). The enzyme is
also known as pyrophosphate-dependent
phosphofructokinase. The usage of PPi-dependent enzymes
in glycolysis presumably frees up ATP for other
processes. TIGR02482 represents the ATP-dependent
6-phosphofructokinase enzyme contained within Pfam
pfam00365: Phosphofructokinase. This model hits
primarily bacterial, plant alpha, and plant beta
sequences [Energy metabolism,
Glycolysis/gluconeogenesis].
Length = 539
Score = 75.1 bits (185), Expect = 7e-15
Identities = 54/188 (28%), Positives = 90/188 (47%), Gaps = 7/188 (3%)
Query: 149 IVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKR 208
++ GG PG + VI + L + ++ G GG G N + L+ ++++
Sbjct: 72 VILSGGQAPGGHNVISGLFDALKKLNPNSKLYGFIGGPLGLLDNNYVELTKELIDTYRNT 131
Query: 209 GG-TILRTSRGGHDT----NKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQV 263
GG I+ + R +T K + + ++ + IIGGD + AAL+ + K GL+
Sbjct: 132 GGFDIIGSGRTKIETEEQFAKALTTAKKLKLDGLVIIGGDDSNTNAALLAEYFAKHGLKT 191
Query: 264 AVAGIPKTIDNDIA--VIDKSFGFDTAVEEAQRAINAAHVEVESVENGVGIVKLMGRYSG 321
V G+PKTID D+ I+ SFGFDTA + I + S + ++LMGR +
Sbjct: 192 QVIGVPKTIDGDLKNQFIETSFGFDTACKIYSELIGNICRDALSAKKYWHFIRLMGRSAS 251
Query: 322 FISMYATL 329
I++ L
Sbjct: 252 HIALECAL 259
>gnl|CDD|238390 cd00765, Pyrophosphate_PFK, Phosphofructokinase, a key regulatory
enzyme in glycolysis, catalyzes the phosphorylation of
fructose-6-phosphate to fructose-1,6-biphosphate. The
members belong to a subfamily of the PFKA family
(cd00363) and include pyrophosphate-dependent
phosphofructokinases. These are found in bacteria as
well as plants. These may be dimeric nonallosteric
enzymes as in bacteria or allosteric heterotetramers as
in plants.
Length = 550
Score = 73.0 bits (179), Expect = 3e-14
Identities = 53/192 (27%), Positives = 88/192 (45%), Gaps = 7/192 (3%)
Query: 145 VRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVND 204
++ IV GG PG + VI + L + G +GG G + + L+ + +
Sbjct: 73 LKIGIVLSGGQAPGGHNVISGLFDYLKERAKGSTLYGFKGGPAGILKCDYIELNAEYIQP 132
Query: 205 IHKRGG-TILRTSRGGHDT----NKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKR 259
GG ++ + R +T + + + ++ + +IGGD + AAL+ + +
Sbjct: 133 YRNTGGFDMICSGRTKIETEDQFKQAEETAKKLDLDALVVIGGDDSNTNAALLAENFRSK 192
Query: 260 GLQVAVAGIPKTIDNDIA--VIDKSFGFDTAVEEAQRAINAAHVEVESVENGVGIVKLMG 317
GL+ V G+PKTID D+ I+ SFGFDTA + I + S VKLMG
Sbjct: 193 GLKTRVIGVPKTIDGDLKNKEIETSFGFDTATKIYSELIGNVMRDARSTGKYWHFVKLMG 252
Query: 318 RYSGFISMYATL 329
R + I++ L
Sbjct: 253 RSASHIALECAL 264
>gnl|CDD|233884 TIGR02478, 6PF1K_euk, 6-phosphofructokinase, eukaryotic type.
Members of this family are eukaryotic (with one
exception) ATP-dependent 6-phosphofructokinases (EC
2.7.1.11) in which two tandem copies of the
phosphofructokinase are found. Members are found, often
including several isozymes, in animals and fungi and in
the bacterium Propionibacterium acnes KPA171202 (a human
skin commensal).
Length = 746
Score = 72.0 bits (177), Expect = 7e-14
Identities = 49/200 (24%), Positives = 84/200 (42%), Gaps = 5/200 (2%)
Query: 134 PREKVYFKSDEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKN 193
++ V ++ +R I+ G G+N R V + ++ I G+ G +
Sbjct: 379 DKKLVPSEASRLRIAIIHVGAPAGGMNAATRSAV--RYALARGHTVIAIHNGFSGLARHD 436
Query: 194 TLTLSPKVVNDIHKRGGTILRTSRG--GHDTNKIVDNIEDRGINQVYIIGGDGTQKGAAL 251
L+ V GG+ L T+R G D I + I+ + IIGG +
Sbjct: 437 VRELTWSDVEGWVGEGGSELGTNRSLPGDDLGTIAYYFQQHKIDGLIIIGGFEAFEALYQ 496
Query: 252 IYKEVEKR-GLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVESVENGV 310
+ EK ++ + IP TI N++ + S G DTA+ E + + + V
Sbjct: 497 LDAAREKYPAFRIPMVVIPATISNNVPGTEYSLGSDTALNEITEYCDNIKQSASASKRRV 556
Query: 311 GIVKLMGRYSGFISMYATLA 330
+V+ MG YSG+++ A LA
Sbjct: 557 FVVETMGGYSGYLATMAGLA 576
Score = 68.5 bits (168), Expect = 1e-12
Identities = 56/211 (26%), Positives = 94/211 (44%), Gaps = 37/211 (17%)
Query: 149 IVTCGGLCPGINTVIREIV-CGLSY---MYGVDEILGIEGGYRGFYSKNTLTLSPKVVND 204
++T GG G+N +R +V + +Y + E G +G G N + V
Sbjct: 5 VLTSGGDAQGMNAAVRAVVRMAIYVGCRVYAIRE--GYQGLVDG--GDNIEEAQWEDVRG 60
Query: 205 IHKRGGTILRTSR--------GGHDTNKIVDNIEDRGINQVYIIGGDGTQKGAAL----- 251
I GGTI+ T+R G K N+ GI+ + +IGGDG+ GA L
Sbjct: 61 ILSLGGTIIGTARCKEFRERPG---RLKAARNLVSNGIDALVVIGGDGSLTGADLFREEW 117
Query: 252 ------------IYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAA 299
I E + + + G+ +IDND+ D + G D+A+ AI+A
Sbjct: 118 PSLLEELVDTGKITAEQAEEHRHLTIVGLVGSIDNDMCGTDMTIGADSALHRICEAIDAI 177
Query: 300 HVEVESVENGVGIVKLMGRYSGFISMYATLA 330
+S + +V++MGR+ G++++ A +A
Sbjct: 178 SSTAQSHQRAF-VVEVMGRHCGYLALMAAIA 207
>gnl|CDD|180620 PRK06555, PRK06555, pyrophosphate--fructose-6-phosphate
1-phosphotransferase; Validated.
Length = 403
Score = 68.9 bits (169), Expect = 5e-13
Identities = 53/210 (25%), Positives = 101/210 (48%), Gaps = 24/210 (11%)
Query: 146 RACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVND- 204
+ ++T GGL P +++ + ++ + + EI+ GY+G +++ ++P V +
Sbjct: 5 KVALLTAGGLAPCLSSAVGGLIERYTEIAPEVEIIAYRSGYQGLLLGDSIEITPAVRANA 64
Query: 205 --IHKRGGTILRTSR----------------GGHDTNKI-VDNIEDRGINQVYIIGGDGT 245
+H+ GG+ + SR G + K+ + + G++ ++ IGGD T
Sbjct: 65 GLLHRYGGSPIGNSRVKLTNVADCVKRGLVKEGENPLKVAAERLAADGVDILHTIGGDDT 124
Query: 246 QKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVES 305
AA + + + G + V G+PKTIDND+ I +S G TA E+ A +V E
Sbjct: 125 NTTAADLAAYLAENGYDLTVVGLPKTIDNDVVPIRQSLGAWTAAEQG--ARFFDNVINEH 182
Query: 306 VENGVGIV--KLMGRYSGFISMYATLASRD 333
N ++ ++MGR G+++ A R+
Sbjct: 183 SANPRMLIIHEVMGRNCGWLTAATARAYRE 212
>gnl|CDD|235930 PRK07085, PRK07085, diphosphate--fructose-6-phosphate
1-phosphotransferase; Provisional.
Length = 555
Score = 66.1 bits (162), Expect = 5e-12
Identities = 50/188 (26%), Positives = 87/188 (46%), Gaps = 29/188 (15%)
Query: 149 IVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKR 208
++ GG PG + VI + GL + ++ G GG G + + ++ +V+++
Sbjct: 75 VILSGGQAPGGHNVIAGLFDGLKKLNPDSKLFGFIGGPLGLLNGKYIEITEEVIDEYRNT 134
Query: 209 GG-TILRTSRGGHDT----NKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQV 263
GG ++ + R +T ++ ++ ++ + IIGGD + AA++ + K G +
Sbjct: 135 GGFDMIGSGRTKIETEEQKEACLETVKKLKLDGLVIIGGDDSNTNAAILAEYFAKHGCKT 194
Query: 264 AVAGIPKTIDNDI--AVIDKSFGFDTA-------VEEAQRAINAA----HVEVESVENGV 310
V G+PKTID D+ I+ SFGFDTA + R +A H
Sbjct: 195 QVIGVPKTIDGDLKNEFIETSFGFDTATKTYSEMIGNISRDALSAKKYWHF--------- 245
Query: 311 GIVKLMGR 318
+KLMGR
Sbjct: 246 --IKLMGR 251
>gnl|CDD|237600 PRK14072, PRK14072, 6-phosphofructokinase; Provisional.
Length = 416
Score = 64.5 bits (158), Expect = 1e-11
Identities = 31/113 (27%), Positives = 62/113 (54%), Gaps = 2/113 (1%)
Query: 223 NKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKS 282
++++ + I + GG+ + A + + +K G + GIPKTIDND+ D
Sbjct: 93 ERLLEVFKAHDIGYFFYNGGNDSMDTALKVSQLAKKMGYPIRCIGIPKTIDNDLPGTDHC 152
Query: 283 FGFDTAVEEAQRAINAAHVEVESVENG--VGIVKLMGRYSGFISMYATLASRD 333
GF +A + ++ A ++V ++ N V I+++MGR++G+++ A LA ++
Sbjct: 153 PGFGSAAKYIATSVLEAALDVAAMANTSKVFILEVMGRHAGWLAAAAALAKQN 205
>gnl|CDD|215543 PLN03028, PLN03028, pyrophosphate--fructose-6-phosphate
1-phosphotransferase; Provisional.
Length = 610
Score = 61.3 bits (149), Expect = 2e-10
Identities = 56/215 (26%), Positives = 96/215 (44%), Gaps = 10/215 (4%)
Query: 127 VHFRRA---GPREKVYFKSDEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIE 183
HF RA P +V + VR +V CG PG + VI + L +LG
Sbjct: 59 AHFLRATAKVPDAQVITEHPAVRVGVVFCGRQSPGGHNVIWGLHDALKAHNPNSVLLGFL 118
Query: 184 GGYRGFYSKNTLTLSPKVVNDIHKRGGTIL--RTS---RGGHDTNKIVDNIEDRGINQVY 238
GG G +++ TL ++ V++ +GG L RT R N + E ++ +
Sbjct: 119 GGTEGLFAQKTLEITDDVLSTYKNQGGYDLLGRTKDQIRTTEQVNAALAACEALKLDGLV 178
Query: 239 IIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIA--VIDKSFGFDTAVEEAQRAI 296
IIGG + AA + + + + V G+P T++ D+ ++ + GFDT + + I
Sbjct: 179 IIGGVTSNTDAAQLAETFAEAKCKTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQLI 238
Query: 297 NAAHVEVESVENGVGIVKLMGRYSGFISMYATLAS 331
+ + S E ++LMGR + +++ L S
Sbjct: 239 SNVCTDALSAEKYYYFIRLMGRKASHVALECALQS 273
>gnl|CDD|238389 cd00764, Eukaryotic_PFK, Phosphofructokinase, a key regulatory
enzyme in glycolysis, catalyzes the phosphorylation of
fructose-6-phosphate to fructose-1,6-biphosphate. The
members belong to a subfamily of the PFKA family
(cd00363) and include eukaryotic ATP-dependent
phosphofructokinases. These have evolved from the
bacterial PFKs by gene duplication and fusion events and
exhibit complex allosteric behavior.
Length = 762
Score = 60.6 bits (147), Expect = 4e-10
Identities = 51/197 (25%), Positives = 80/197 (40%), Gaps = 13/197 (6%)
Query: 141 KSDEVRACIVTCGGLCPGINTVIREIV-CGLSYMYGVDEILGIEGGYRGFYSKNTLTLSP 199
+ + IV G G+N +R V GL++ + I G+ G + L
Sbjct: 386 EKTNLNIAIVNVGAPAAGMNAAVRSAVRYGLAHGHRP---YAIYDGFEGLAKGQIVELGW 442
Query: 200 KVVNDIHKRGGTILRTSR--GGHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVE 257
V RGG+ L T R D I N + GI+ + I+GG KG + + E
Sbjct: 443 IDVGGWTGRGGSELGTKRTLPKKDLETIAYNFQKYGIDGLIIVGGFEAYKG---LLQLRE 499
Query: 258 KRG----LQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVESVENGVGIV 313
R + + IP T+ N++ D S G DTA+ + + + V IV
Sbjct: 500 AREQYEEFCIPMVLIPATVSNNVPGTDFSLGSDTALNALMKYCDRIKQSASGTKRRVFIV 559
Query: 314 KLMGRYSGFISMYATLA 330
+ MG Y G+++ LA
Sbjct: 560 ETMGGYCGYLATMTGLA 576
Score = 59.8 bits (145), Expect = 7e-10
Identities = 49/207 (23%), Positives = 91/207 (43%), Gaps = 27/207 (13%)
Query: 149 IVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYS--KNTLTLSPKVVNDIH 206
++T GG G+N +R +V + G EG Y G + V++
Sbjct: 8 VLTSGGDAQGMNAAVRAVV-RMGIYVGAKVFFVYEG-YEGLVKGGDYIKQAEWESVSNWL 65
Query: 207 KRGGTILRTSRGGHDTN-----KIVDNIEDRGINQVYIIGGDGTQKGAAL---------- 251
+ GGTI+ ++R + N+ RGI + +IGGDG+ GA L
Sbjct: 66 QEGGTIIGSARCKEFREREGRLQAAYNLIQRGITNLCVIGGDGSLTGADLFRSEWPSLLE 125
Query: 252 -------IYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVE 304
I +E + + + G+ +IDND D + G D+A+ ++A +
Sbjct: 126 ELVKDGKITEEEVAKYQHLNIVGMVGSIDNDFCGTDMTIGTDSALHRICEVVDAITTTAQ 185
Query: 305 SVENGVGIVKLMGRYSGFISMYATLAS 331
S + ++++MGR+ G++++ + LA+
Sbjct: 186 SHQRTF-VLEVMGRHCGYLALVSGLAT 211
>gnl|CDD|215140 PLN02251, PLN02251, pyrophosphate-dependent phosphofructokinase.
Length = 568
Score = 55.2 bits (133), Expect = 2e-08
Identities = 52/206 (25%), Positives = 90/206 (43%), Gaps = 8/206 (3%)
Query: 134 PREKVYFKSDE-VRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSK 192
P + SD+ ++ +V GG PG + VI I L + G +GG G
Sbjct: 85 PSQADALSSDQKLKIGVVLSGGQAPGGHNVISGIFDYLQEHAKGSVLYGFKGGPAGIMKC 144
Query: 193 NTLTLSPKVVNDIHKRGG-TILRTSRGGHDT----NKIVDNIEDRGINQVYIIGGDGTQK 247
+ L+ + + +GG ++ + R +T + + ++ + +IGGD +
Sbjct: 145 KYVELTAEFIYPYRNQGGFDMICSGRDKIETPEQFKQAEETATKLDLDGLVVIGGDDSNT 204
Query: 248 GAALIYKEVEKRGLQVAVAGIPKTIDNDIAV--IDKSFGFDTAVEEAQRAINAAHVEVES 305
A L+ + + L+ V G PKTID D+ + SFGFDTA + I ++ S
Sbjct: 205 NACLLAEYFRAKNLKTRVIGCPKTIDGDLKSKEVPTSFGFDTACKIYSEMIGNVMIDARS 264
Query: 306 VENGVGIVKLMGRYSGFISMYATLAS 331
V+LMGR + I++ L +
Sbjct: 265 TGKYYHFVRLMGRAASHITLECALQT 290
>gnl|CDD|236102 PRK07804, PRK07804, L-aspartate oxidase; Provisional.
Length = 541
Score = 36.1 bits (84), Expect = 0.027
Identities = 27/107 (25%), Positives = 36/107 (33%), Gaps = 27/107 (25%)
Query: 208 RGGTILRTSRGGHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAG 267
G T GGH +IV GGD T GA EV+ R L AV
Sbjct: 117 PDGRWALTREGGHSRRRIVH------------AGGDAT--GA-----EVQ-RALDAAVR- 155
Query: 268 IPKTIDNDIAVIDKSFGFDTAVEEAQRAINA-AHVEVESVENGVGIV 313
+ + + + + D + HV E +GVG V
Sbjct: 156 -----ADPLDIREHALALDLLTDGTGAVAGVTLHVLGEGSPDGVGAV 197
>gnl|CDD|225740 COG3199, COG3199, Predicted inorganic polyphosphate/ATP-NAD kinase
[General function prediction only].
Length = 355
Score = 31.6 bits (72), Expect = 0.53
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 8/61 (13%)
Query: 209 GGTILRTSRGGHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGI 268
+ RT+ DT V + +RG++ + GGDGT + A E G V V GI
Sbjct: 78 QESTPRTTA--EDTINAVRRMVERGVDLIVFAGGDGTARDVA------EAVGADVPVLGI 129
Query: 269 P 269
P
Sbjct: 130 P 130
>gnl|CDD|129330 TIGR00227, ribD_Cterm, riboflavin-specific deaminase C-terminal
domain. Eubacterial riboflavin-specific deaminases have
a zinc-binding domain recognized by the dCMP_cyt_deam
model toward the N-terminus and this domain toward the
C-terminus. Yeast HTP reductase, a
riboflavin-biosynthetic enzyme, and several archaeal
proteins believed related to riboflavin biosynthesis
consist only of this domain and lack the dCMP_cyt_deam
domain.
Length = 216
Score = 31.2 bits (71), Expect = 0.58
Identities = 20/84 (23%), Positives = 29/84 (34%), Gaps = 10/84 (11%)
Query: 70 GFVLEDVPHLTNFLPDLPSYPNPLKKSQAYAVVKQTFVSPEDAVAQNIVIQKDSPRGVHF 129
G VL D P LT +L NP++ V+ P A ++ D+P V
Sbjct: 51 GTVLADDPRLTVRWVELDELRNPVR-----VVLDSQLRVPPTAR----LLNDDAPTWVAT 101
Query: 130 RRAGPREKVYFKSDEVRACIVTCG 153
EKV D ++
Sbjct: 102 TEPADEEKVKELED-FGVEVLVLE 124
>gnl|CDD|206671 cd01884, EF_Tu, Elongation Factor Tu (EF-Tu) GTP-binding proteins.
EF-Tu subfamily. This subfamily includes orthologs of
translation elongation factor EF-Tu in bacteria,
mitochondria, and chloroplasts. It is one of several
GTP-binding translation factors found in the larger
family of GTP-binding elongation factors. The eukaryotic
counterpart, eukaryotic translation elongation factor 1
(eEF-1 alpha), is excluded from this family. EF-Tu is
one of the most abundant proteins in bacteria, as well
as, one of the most highly conserved, and in a number of
species the gene is duplicated with identical function.
When bound to GTP, EF-Tu can form a complex with any
(correctly) aminoacylated tRNA except those for
initiation and for selenocysteine, in which case EF-Tu
is replaced by other factors. Transfer RNA is carried to
the ribosome in these complexes for protein translation.
Length = 195
Score = 30.2 bits (69), Expect = 1.1
Identities = 12/22 (54%), Positives = 13/22 (59%), Gaps = 2/22 (9%)
Query: 286 DTAVEEAQRA--INAAHVEVES 305
D A EE R IN AHVE E+
Sbjct: 41 DKAPEEKARGITINTAHVEYET 62
>gnl|CDD|107306 cd06311, PBP1_ABC_sugar_binding_like_3, Periplasmic sugar-binding
domain of uncharacterized ABC-type transport systems.
Periplasmic sugar-binding domain of uncharacterized
ABC-type transport systems that share homology with a
family of pentose/hexose sugar-binding proteins of the
type I periplasmic binding protein superfamily, which
consists of two domains connected by a three-stranded
hinge. The substrate specificity of this group is not
known, but it is predicted to be involved in the
transport of sugar-containing molecules and chemotaxis.
Length = 274
Score = 30.0 bits (68), Expect = 1.5
Identities = 18/67 (26%), Positives = 27/67 (40%), Gaps = 12/67 (17%)
Query: 231 DRGINQVYI----IGGDGTQKG---AALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSF 283
DRG++ + GD G I ++ G V + GIP IDN ++
Sbjct: 92 DRGLSSPGAQDLYVAGDNYGMGRVAGEYIATKLGGNGNIVVLRGIPTPIDN-----ERVD 146
Query: 284 GFDTAVE 290
FD A+
Sbjct: 147 AFDAAIA 153
>gnl|CDD|184062 PRK13455, PRK13455, F0F1 ATP synthase subunit B; Provisional.
Length = 184
Score = 29.0 bits (65), Expect = 2.7
Identities = 12/44 (27%), Positives = 20/44 (45%)
Query: 254 KEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAIN 297
K V R + VAVA I + D + D A++E + ++
Sbjct: 141 KAVRDRAVSVAVAAAADVIAKQMTAADANALIDEAIKEVEARLH 184
>gnl|CDD|130081 TIGR01008, rpsC_E_A, ribosomal protein S3, eukaryotic/archaeal
type. This model describes ribosomal protein S3 of the
eukaryotic cytosol and of the archaea. TIGRFAMs model
TIGR01009 describes the bacterial/organellar type,
although the organellar types have a different
architecture with long insertions and may score poorly
[Protein synthesis, Ribosomal proteins: synthesis and
modification].
Length = 195
Score = 28.2 bits (63), Expect = 4.9
Identities = 13/44 (29%), Positives = 17/44 (38%)
Query: 111 DAVAQNIVIQKDSPRGVHFRRAGPREKVYFKSDEVRACIVTCGG 154
+A Q I + RG+HFRRA + VT G
Sbjct: 89 NAQVQAERIARSLERGLHFRRAAYTAVRRIMEAGAKGVEVTISG 132
>gnl|CDD|234022 TIGR02813, omega_3_PfaA, polyketide-type polyunsaturated fatty acid
synthase PfaA. Members of the seed for this alignment
are involved in omega-3 polyunsaturated fatty acid
biosynthesis, such as the protein PfaA from the
eicosapentaenoic acid biosynthesis operon in
Photobacterium profundum strain SS9. PfaA is encoded
together with PfaB, PfaC, and PfaD, and the functions of
the individual polypeptides have not yet been described.
More distant homologs of PfaA, also included with the
reach of this model, appear to be involved in
polyketide-like biosynthetic mechanisms of
polyunsaturated fatty acid biosynthesis, an alternative
to the more familiar iterated mechanism of chain
extension and desaturation, and in most cases are encoded
near genes for homologs of PfaB, PfaC, and/or PfaD.
Length = 2582
Score = 28.8 bits (64), Expect = 4.9
Identities = 18/93 (19%), Positives = 38/93 (40%), Gaps = 10/93 (10%)
Query: 223 NKIVDNI--EDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTI-------D 273
NK+V ++ E + ++ D A ++ +++ G QVAV P +
Sbjct: 1741 NKLVQDVTGEGKQSGANALVIDDDGH-NAGVLAEKLIAAGWQVAVVRSPWVVSHSASPLA 1799
Query: 274 NDIAVIDKSFGFDTAVEEAQRAINAAHVEVESV 306
+ IA + DT++E + I +++
Sbjct: 1800 SAIASVTLGTIDDTSIEAVIKDIEEKTAQIDGF 1832
>gnl|CDD|237021 PRK11914, PRK11914, diacylglycerol kinase; Reviewed.
Length = 306
Score = 28.2 bits (63), Expect = 5.5
Identities = 36/146 (24%), Positives = 57/146 (39%), Gaps = 27/146 (18%)
Query: 200 KVVNDIHKRGGTILR-TSRGGHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEK 258
+ + +H RG ++ HD +V +G + + ++GGDG V
Sbjct: 30 RAIARLHHRGVDVVEIVGTDAHDARHLVAAALAKGTDALVVVGGDG-----------VIS 78
Query: 259 RGLQVAVAG------IPKTIDNDIAVIDKSFGFDTAVEEAQRAINA----AHVEVESVEN 308
LQV IP ND A + FG T EA + V++ +++
Sbjct: 79 NALQVLAGTDIPLGIIPAGTGNDHA---REFGIPTGDPEAAADVIVDGWTETVDLGRIQD 135
Query: 309 GVGIVKLMGRY--SGFISMYATLASR 332
GIVK G +GF S+ A+R
Sbjct: 136 DDGIVKWFGTVAATGFDSLVTDRANR 161
>gnl|CDD|214695 smart00493, TOPRIM, topoisomerases, DnaG-type primases, OLD family
nucleases and RecR proteins.
Length = 75
Score = 26.1 bits (58), Expect = 6.7
Identities = 11/59 (18%), Positives = 24/59 (40%), Gaps = 2/59 (3%)
Query: 198 SPKVVNDIHKRGGTILR-TSRGGH-DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYK 254
P + K GG + GGH + + + ++ I+ D ++G A+ ++
Sbjct: 8 GPADAIALEKAGGKRGNVVALGGHLLSKEQIKLLKKLAKKAEVILATDPDREGEAIAWE 66
>gnl|CDD|173801 cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 family domain in
Streptococcal C5a peptidases. Streptococcal C5a
peptidase (SCP), is a highly specific protease and
adhesin/invasin. The subtilisin-like protease domain is
located at the N-terminus and contains a
protease-associated domain inserted into a loop. There
are three fibronectin type III (Fn) domains at the
C-terminus. SCP binds to integrins with the help of
Arg-Gly-Asp motifs which are thought to stabilize
conformational changes required for substrate binding.
Peptidases S8 or Subtilases are a serine endo- and
exo-peptidase clan. They have an Asp/His/Ser catalytic
triad similar to that found in trypsin-like proteases,
but do not share their three-dimensional structure and
are not homologous to trypsin. The stability of
subtilases may be enhanced by calcium, some members have
been shown to bind up to 4 ions via binding sites with
different affinity. Some members of this clan contain
disulfide bonds. These enzymes can be intra- and
extracellular, some function at extreme temperatures and
pH values.
Length = 346
Score = 27.6 bits (62), Expect = 9.4
Identities = 16/55 (29%), Positives = 21/55 (38%), Gaps = 12/55 (21%)
Query: 278 VIDKSFG----FDTAVEEAQRAINAAHVEVESVENGVGIVKLMG--RYSGFISMY 326
VI+ S G F + Q+AI A E GV +V G SG +
Sbjct: 147 VINMSLGSTAGFVDLDDPEQQAIKRAR------EAGVVVVVAAGNDGNSGSGTSK 195
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.137 0.397
Gapped
Lambda K H
0.267 0.0755 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 17,412,120
Number of extensions: 1736367
Number of successful extensions: 1692
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1629
Number of HSP's successfully gapped: 56
Length of query: 337
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 240
Effective length of database: 6,635,264
Effective search space: 1592463360
Effective search space used: 1592463360
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.5 bits)