RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 019697
(337 letters)
>2hig_A 6-phospho-1-fructokinase; transferase; 2.40A {Trypanosoma brucei}
PDB: 3f5m_A*
Length = 487
Score = 371 bits (955), Expect = e-127
Identities = 110/287 (38%), Positives = 158/287 (55%), Gaps = 16/287 (5%)
Query: 60 RSSNQKVHNDGFVLEDVPHLTNFLPDLP--SYPNPLKKSQAYAVVKQTFVSPEDAVAQNI 117
R +++ V +L V + LP YPNP KK + F D + N
Sbjct: 8 RVTSKLVKAHRAMLNSVTQEDLKVDRLPGADYPNPSKKYSSR----TEFRDKTDYIMYNP 63
Query: 118 VIQKD-------SPRGVHFRRAGPREKVYFKSDEVRACIVTCGGLCPGINTVIREIVCGL 170
+ + S + A R +++F E IVTCGG+CPG+N VIR I
Sbjct: 64 RPRDEPSSENPVSVSPLLCELAAARSRIHFNPTETTIGIVTCGGICPGLNDVIRSITLTG 123
Query: 171 SYMYGVDEILGIEGGYRGFY---SKNTLTLSPKVVNDIHKRGGTILRTSRGGHDTNKIVD 227
+Y V ++G GY G S+ + L V +IH GGTIL +SRG D ++VD
Sbjct: 124 INVYNVKRVIGFRFGYWGLSKKGSQTAIELHRGRVTNIHHYGGTILGSSRGPQDPKEMVD 183
Query: 228 NIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDT 287
+E G+N ++ +GGDGTQ+GA +I +E ++RG+ ++V G+PKTIDND++ ++FGF T
Sbjct: 184 TLERLGVNILFTVGGDGTQRGALVISQEAKRRGVDISVFGVPKTIDNDLSFSHRTFGFQT 243
Query: 288 AVEEAQRAINAAHVEVESVENGVGIVKLMGRYSGFISMYATLASRDV 334
AVE+A +AI AA+ E S GVG+VKLMGR SGFI+ A +AS
Sbjct: 244 AVEKAVQAIRAAYAEAVSANYGVGVVKLMGRDSGFIAAQAAVASAQA 290
>2f48_A Diphosphate--fructose-6-phosphate 1-phosphotransf; phosphotransfer,
transferase; HET: FBP; 2.11A {Borrelia burgdorferi}
SCOP: c.89.1.1 PDB: 1kzh_A*
Length = 555
Score = 239 bits (611), Expect = 1e-74
Identities = 62/271 (22%), Positives = 110/271 (40%), Gaps = 34/271 (12%)
Query: 81 NFLPDLPS------------YPNPLKKSQAYAVVKQTFVSPEDAVAQNIVIQKDSPRGVH 128
++P LP+ Y + Q +K+ F + I+ + +
Sbjct: 12 KYIPKLPNILKKDFNNISLVYGENTEAIQDRQALKEFFK---NTYGLPIISFTEGESSLS 68
Query: 129 FRRAGPREKVYFKSDEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRG 188
F S + I+ GG PG + VI + + ++ G +GG G
Sbjct: 69 F------------SKALNIGIILSGGPAPGGHNVISGVFDAIKKFNPNSKLFGFKGGPLG 116
Query: 189 FYSKNTLTLSPKVVNDIHKRGGTILRTSRGGH-----DTNKIVDNIEDRGINQVYIIGGD 243
+ + L+ ++N GG + +S NK + ++ +N + IIGGD
Sbjct: 117 LLENDKIELTESLINSYRNTGGFDIVSSGRTKIETEEHYNKALFVAKENNLNAIIIIGGD 176
Query: 244 GTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIA--VIDKSFGFDTAVEEAQRAINAAHV 301
+ AA++ + +K G + V G+PKTID D+ I+ SFGFD+A + I
Sbjct: 177 DSNTNAAILAEYFKKNGENIQVIGVPKTIDADLRNDHIEISFGFDSATKIYSELIGNLCR 236
Query: 302 EVESVENGVGIVKLMGRYSGFISMYATLASR 332
+ S + VKLMGR + +++ L +
Sbjct: 237 DAMSTKKYWHFVKLMGRSASHVALECALKTH 267
>1pfk_A Phosphofructokinase; transferase(phosphotransferase); HET: FBP ADP;
2.40A {Escherichia coli} SCOP: c.89.1.1 PDB: 2pfk_A
Length = 320
Score = 153 bits (390), Expect = 2e-44
Identities = 62/188 (32%), Positives = 98/188 (52%), Gaps = 14/188 (7%)
Query: 149 IVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKR 208
++T GG PG+N IR +V G+ E++GI GY G Y + L V+D+ R
Sbjct: 7 VLTSGGDAPGMNAAIRGVVRSALT-EGL-EVMGIYDGYLGLYEDRMVQLDRYSVSDMINR 64
Query: 209 GGTILRTSRGGHDTN-----KIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQV 263
GGT L ++R + ++N++ RGI+ + +IGGDG+ GA + + G
Sbjct: 65 GGTFLGSARFPEFRDENIRAVAIENLKKRGIDALVVIGGDGSYMGAMRLTEM----GFPC 120
Query: 264 AVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVESVENGVGIVKLMGRYSGFI 323
G+P TIDNDI D + GF TA+ AI+ S + + +V++MGRY G +
Sbjct: 121 I--GLPGTIDNDIKGTDYTIGFFTALSTVVEAIDRLRDTSSSHQR-ISVVEVMGRYCGDL 177
Query: 324 SMYATLAS 331
++ A +A
Sbjct: 178 TLAAAIAG 185
>4a3s_A 6-phosphofructokinase; transferase, glycolysis, degradosome; 2.30A
{Bacillus subtilis} PDB: 6pfk_A 3u39_A 3pfk_A 4pfk_A*
1mto_A*
Length = 319
Score = 152 bits (387), Expect = 6e-44
Identities = 64/188 (34%), Positives = 93/188 (49%), Gaps = 14/188 (7%)
Query: 149 IVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKR 208
++T GG PG+N +R +V Y + V E+ GI GY G S L V DI R
Sbjct: 6 VLTSGGDSPGMNAAVRAVVRKAIY-HDV-EVYGIYNGYAGLISGKIEKLELGSVGDIIHR 63
Query: 209 GGTILRTSRGGHDTN-----KIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQV 263
GGT L T+R K + N++ GI + +IGGDG+ GA + +
Sbjct: 64 GGTKLYTARCPEFKTVEGREKGIANLKKLGIEGLVVIGGDGSYMGAKKLTEH------GF 117
Query: 264 AVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVESVENGVGIVKLMGRYSGFI 323
G+P TIDNDI D + GFDTA+ AI+ S ++++MGR++G I
Sbjct: 118 PCVGVPGTIDNDIPGTDFTIGFDTALNTVIDAIDKIRDTATS-HERTYVIEVMGRHAGDI 176
Query: 324 SMYATLAS 331
+++A LA
Sbjct: 177 ALWAGLAG 184
>1zxx_A 6-phosphofructokinase; allosteric regulation, lactobacillus BU
transferase; 1.85A {Lactobacillus delbrueckii subsp}
Length = 319
Score = 152 bits (386), Expect = 9e-44
Identities = 58/188 (30%), Positives = 88/188 (46%), Gaps = 14/188 (7%)
Query: 149 IVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKR 208
I+T GG PG+N +R + G+ E+ GI G+ G + + L + V +
Sbjct: 6 ILTSGGDAPGMNAAVRAVTRVAIA-NGL-EVFGIRYGFAGLVAGDIFPLESEDVAHLINV 63
Query: 209 GGTILRTSRGGHDTN-----KIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQV 263
GT L ++R ++ ++ GI+ V +IGGDG+ GA + + G
Sbjct: 64 SGTFLYSARYPEFAEEEGQLAGIEQLKKHGIDAVVVIGGDGSYHGALQLTRH----GFNS 119
Query: 264 AVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVESVENGVGIVKLMGRYSGFI 323
G+P TIDNDI D + G+DTA A AI+ S + V IV +MGR G I
Sbjct: 120 I--GLPGTIDNDIPYTDATIGYDTACMTAMDAIDKIRDTASS-HHRVFIVNVMGRNCGDI 176
Query: 324 SMYATLAS 331
+M +A
Sbjct: 177 AMRVGVAC 184
>3o8o_A 6-phosphofructokinase subunit alpha; transferase; HET: F6P FDP;
2.90A {Saccharomyces cerevisiae}
Length = 787
Score = 150 bits (380), Expect = 2e-40
Identities = 39/203 (19%), Positives = 77/203 (37%), Gaps = 8/203 (3%)
Query: 134 PREKVYFKSDEVRACIVTCGGLCPGINTVIREIV-CGLSYMYGVDEILGIEGGYRGFY-S 191
++ SD + IV G +N R LS+ + + I G+ G +
Sbjct: 383 DGSELLPVSDRLNIGIVHVGAPSAALNAATRAATLYCLSHGH---KPYAIMNGFSGLIQT 439
Query: 192 KNTLTLSPKVVNDIHKRGGTILRTSRG--GHDTNKIVDNIEDRGINQVYIIGGDGTQKGA 249
LS V + H GG+ + T+R D I + ++ + I+GG +
Sbjct: 440 GEVKELSWIDVENWHNLGGSEIGTNRSVASEDLGTIAYYFQKNKLDGLIILGGFEGFRSL 499
Query: 250 ALIYKEVEK-RGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVESVEN 308
+ + + + IP T+ N++ + S G DT + + +
Sbjct: 500 KQLRDGRTQHPIFNIPMCLIPATVSNNVPGTEYSLGVDTCLNALVNYTDDIKQSASATRR 559
Query: 309 GVGIVKLMGRYSGFISMYATLAS 331
V + ++ G +SG+I+ + L +
Sbjct: 560 RVFVCEVQGGHSGYIASFTGLIT 582
Score = 129 bits (327), Expect = 2e-33
Identities = 46/207 (22%), Positives = 92/207 (44%), Gaps = 27/207 (13%)
Query: 149 IVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTL--TLSPKVVNDIH 206
++T GG PG+N +R +V + +G ++ + GY G ++ + V
Sbjct: 10 VMTSGGDSPGMNAAVRAVVRTGIH-FGC-DVFAVYEGYEGLLRGGKYLKKMAWEDVRGWL 67
Query: 207 KRGGTILRTSRGGHDTN-----KIVDNIEDRGINQVYIIGGDGTQKGAALIYKE------ 255
GGT++ T+R + N+ +GI+ + + GGDG+ GA L E
Sbjct: 68 SEGGTLIGTARSMEFRKREGRRQAAGNLISQGIDALVVCGGDGSLTGADLFRHEWPSLVD 127
Query: 256 -----------VEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVE 304
+++ G+ +IDND++ D + G +A+E ++ +
Sbjct: 128 ELVAEGRFTKEEVAPYKNLSIVGLVGSIDNDMSGTDSTIGAYSALERICEMVDYIDATAK 187
Query: 305 SVENGVGIVKLMGRYSGFISMYATLAS 331
S +V++MGR+ G++++ A +A+
Sbjct: 188 SHSR-AFVVEVMGRHCGWLALMAGIAT 213
>3o8o_B 6-phosphofructokinase subunit beta; transferase; HET: F6P FDP;
2.90A {Saccharomyces cerevisiae}
Length = 766
Score = 149 bits (378), Expect = 3e-40
Identities = 42/189 (22%), Positives = 75/189 (39%), Gaps = 9/189 (4%)
Query: 149 IVTCGGLCPGINTVIREIV-CGLSYMYGVDEILGIEGGYRGFYSKNTLT-LSPKVVNDIH 206
IV G GIN+ + + +S G I G+ G ++ L+ K +
Sbjct: 398 IVNVGAPAGGINSAVYSMATYCMSQ--GH-RPYAIYNGWSGLARHESVRSLNWKDMLGWQ 454
Query: 207 KRGGTILRTSRG---GHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEK-RGLQ 262
RGG+ + T+R D I + + + I+GG + + + E +
Sbjct: 455 SRGGSEIGTNRVTPEEADLGMIAYYFQKYEFDGLIIVGGFEAFESLHQLERARESYPAFR 514
Query: 263 VAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVESVENGVGIVKLMGRYSGF 322
+ + IP T+ N++ + S G DTA+ + S +V G SG+
Sbjct: 515 IPMVLIPATLSNNVPGTEYSLGSDTALNALMEYCDVVKQSASSTRGRAFVVDCQGGNSGY 574
Query: 323 ISMYATLAS 331
++ YA+LA
Sbjct: 575 LATYASLAV 583
Score = 126 bits (320), Expect = 2e-32
Identities = 49/220 (22%), Positives = 86/220 (39%), Gaps = 52/220 (23%)
Query: 149 IVTCGGLCPGINTVIREIV-CGLSYMYGVDEILGIEGGYRGFYSKNTLT---LSPKVVND 204
++T GG PG+N+ +R IV + G + GY G + V
Sbjct: 8 VMTSGGDAPGMNSNVRAIVRSAIFK--GC-RAFVVMEGYEGLVRGGPEYIKEFHWEDVRG 64
Query: 205 IHKRGGTILRTSRGGHDTN-----KIVDNIEDRGINQVYIIGGDGTQKGAALIYKE---- 255
GGT + T+R ++ + G++ + + GGDG+ GA L E
Sbjct: 65 WSAEGGTNIGTARCMEFKKREGRLLGAQHLIEAGVDALIVCGGDGSLTGADLFRSEWPSL 124
Query: 256 -------------VEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINA---- 298
+R + + G +IDND++ D + G +A++ +AI+
Sbjct: 125 IEELLKTNRISNEQYERMKHLNICGTVGSIDNDMSTTDATIGAYSALDRICKAIDYVEAT 184
Query: 299 --AH-----VEVESVENGVGIVKLMGRYSGFISMYATLAS 331
+H VEV MGR G++++ A +A+
Sbjct: 185 ANSHSRAFVVEV------------MGRNCGWLALLAGIAT 212
>3opy_A 6-phosphofructo-1-kinase alpha-subunit; ATP binding,
fructose-6-phosphate bindi magnesium binding, citrate
binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Length = 989
Score = 149 bits (378), Expect = 3e-40
Identities = 39/206 (18%), Positives = 76/206 (36%), Gaps = 8/206 (3%)
Query: 131 RAGPREKVYFKSDEVRACIVTCGGLCPGINTVIREIV-CGLSYMYGVDEILGIEGGYRGF 189
+ + +S + I+ G +N R L+ G + I G+ G
Sbjct: 585 KYDDGSYLVPESSRLNIAIIHVGAPTSALNPATRVATLNSLAK--GH-RVFAIRNGFAGL 641
Query: 190 YSKNTLT-LSPKVVNDIHKRGGTILRTSRG--GHDTNKIVDNIEDRGINQVYIIGGDGTQ 246
+ L+ V D H GG+ + T+R D + + + + IIGG
Sbjct: 642 IRHGAVRELNWIDVEDWHNTGGSEIGTNRSLPSDDMGTVAYYFQQYKFDGLIIIGGFEAF 701
Query: 247 KGAALIYKEVEK-RGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVES 305
+ + + + +P T+ N++ + S G DT + +A +
Sbjct: 702 TALYELDAARAQYPIFNIPMCCLPATVSNNVPGTEYSLGSDTCLNTLSGYCDAVKQSASA 761
Query: 306 VENGVGIVKLMGRYSGFISMYATLAS 331
+V++ G YSG+++ YA L +
Sbjct: 762 SRRRTFVVEVQGGYSGYLASYAGLIT 787
Score = 132 bits (333), Expect = 3e-34
Identities = 71/372 (19%), Positives = 139/372 (37%), Gaps = 50/372 (13%)
Query: 2 DHSISSRSLSRSPSPSISPFNSKRMILNPVFHKFNFDSRNFEIKPLVSRQNRPVVVAVRS 61
SI L P + + R + P+ ++S + Q+ VV+ +R
Sbjct: 55 TDSIKEIWLESFPLSEVVEASGGRELRKPLQESVGYESE--ALLGYSPYQSGGVVIKLRL 112
Query: 62 SNQKVHNDG-------FVLEDVPHLTNFLPDLPS--YPNPLKKSQAYA------VVKQTF 106
SN + + F + L L ++ + P+ + + V+ +
Sbjct: 113 SNHDLEKNNDLPGEVTFFTASIDKLKAKLIEIGAEIIPSKIDLVEFSTRDPMGDVISFSS 172
Query: 107 VSPEDAVAQNIVIQKDSPRGVHFRRAGPREKVYFKSDEVRACIVTCGGLCPGINTVIREI 166
++ P+ E+V + + + I+T GG PG+N +R +
Sbjct: 173 YPSLNSKKITSPDFFLHPKKEVRSEESIVEQVKSEEGKKKIAIITSGGDAPGMNAAVRAV 232
Query: 167 V-CGLSYMYGVDEILGIEGGYRGFYSKNTL--TLSPKVVNDIHKRGGTILRTSR------ 217
G+ Y G ++ GY G + L + V + GGTI+ T+R
Sbjct: 233 TRAGIFY--GC-KVYACYEGYTGLVKGGDMLKELQWQDVRGLLSIGGTIIGTARCKEFRE 289
Query: 218 -GGHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKE-----------------VEKR 259
G + N+ GI+ + + GGDG+ GA L KE +
Sbjct: 290 RWGRL--QACYNMVSNGIDALVVCGGDGSLTGADLFRKEWPELIKELLGEDKITKEQYET 347
Query: 260 GLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVESVENGVGIVKLMGRY 319
+ + G+ +IDND+ D + G +++E ++ S +V++MGR+
Sbjct: 348 HRNLTIVGLVGSIDNDMCGTDSTIGAYSSLERIIELVDYIDATAASHSR-AFVVEVMGRH 406
Query: 320 SGFISMYATLAS 331
G++ + + +A+
Sbjct: 407 CGWLGLMSGIAT 418
>3o8l_A 6-phosphofructokinase, muscle type; transferase; HET: ATP ADP;
3.20A {Oryctolagus cuniculus} PDB: 3o8n_A*
Length = 762
Score = 147 bits (374), Expect = 1e-39
Identities = 49/208 (23%), Positives = 79/208 (37%), Gaps = 13/208 (6%)
Query: 128 HFRRAGPREKVYFKSDEVRACIVTCGGLCPGINTVIREIV-CGLSYMYGVDEILGIEGGY 186
H R P+ Y ++ G G+N +R V GL G +L + G+
Sbjct: 390 HIRPPAPKSGSY------TVAVMNVGAPAAGMNAAVRSTVRIGLIQ--GN-RVLVVHDGF 440
Query: 187 RGFYSKNTLTLSPKVVNDIHKRGGTILRTSRG--GHDTNKIVDNIEDRGINQVYIIGGDG 244
G V +GG+ L + R +I NI I + IIGG
Sbjct: 441 EGPAKGQIEEAGWSYVGGWTGQGGSKLGSKRTLPKKSFEQISANITKFNIQGLVIIGGFE 500
Query: 245 TQKGAALIYKEVEKRG-LQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEV 303
G + + ++ L + IP T+ N++ D S G DTA+ +
Sbjct: 501 AYTGGLELMEGRKQFDELCIPFVVIPATVSNNVPGSDFSVGADTALNTICTTCDRIKQSA 560
Query: 304 ESVENGVGIVKLMGRYSGFISMYATLAS 331
+ V I++ MG Y G+++ A LA+
Sbjct: 561 AGTKRRVFIIETMGGYCGYLATMAGLAA 588
Score = 131 bits (331), Expect = 5e-34
Identities = 46/208 (22%), Positives = 92/208 (44%), Gaps = 29/208 (13%)
Query: 149 IVTCGGLCPGINTVIREIV-CGLSYMYGVDEILGIEGGYRGFY--SKNTLTLSPKVVNDI 205
++T GG G+N +R +V G+ G + + GY+G + + + V+ +
Sbjct: 20 VLTSGGDAQGMNAAVRAVVRVGIFT--GA-RVFFVHEGYQGLVDGGDHIREATWESVSMM 76
Query: 206 HKRGGTILRTSRGGHDTN-----KIVDNIEDRGINQVYIIGGDGTQKGAALIYKE----- 255
+ GGT++ ++R + N+ RGI + +IGGDG+ GA E
Sbjct: 77 LQLGGTVIGSARCKDFREREGRLRAAHNLVKRGITNLCVIGGDGSLTGADTFRSEWSDLL 136
Query: 256 ------------VEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEV 303
R + + G+ +IDND D + G D+A+ ++A
Sbjct: 137 SDLQKAGKITAEEATRSSYLNIVGLVGSIDNDFCGTDMTIGTDSALHRITEIVDAITTTA 196
Query: 304 ESVENGVGIVKLMGRYSGFISMYATLAS 331
+S + ++++MGR+ G++++ +L+
Sbjct: 197 QSHQR-TFVLEVMGRHCGYLALVTSLSC 223
>3hno_A Pyrophosphate-dependent phosphofructokinase; structural genomics,
PSI-2, protein structure initiative; 2.00A {Nitrosospira
multiformis atcc 25196} PDB: 3k2q_A
Length = 419
Score = 141 bits (357), Expect = 7e-39
Identities = 36/201 (17%), Positives = 74/201 (36%), Gaps = 15/201 (7%)
Query: 146 RACIVTCGGLCPGINTVIREIVCGLSYMYG-VDEILGIEGGYRGFYSKNTLTLSPKVVND 204
A GG+ IN ++ G + I G G +++ + +
Sbjct: 5 NAFYAQSGGVTAVINASAAGVIEAARKQSGKIGRIYAGRNGIIGALTEDLIDTGQESDAA 64
Query: 205 IHK---RGGTILRTSR--------GGHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIY 253
I + R + ++++ + I + GG + +
Sbjct: 65 ISALRYTPSGAFGSCRYKLKSLEQNRREYERLIEVFKAHDIGYFFYNGGGDSADTCLKVS 124
Query: 254 KEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVESVE---NGV 310
+ G + +PKT+DND+ + D GF + + + A +V S+ V
Sbjct: 125 QLSGTLGYPIQAIHVPKTVDNDLPITDCCPGFGSVAKYIAVSTLEASFDVASMSATSTKV 184
Query: 311 GIVKLMGRYSGFISMYATLAS 331
++++MGR++G+I+ LAS
Sbjct: 185 FVLEVMGRHAGWIAAAGGLAS 205
>3opy_B 6-phosphofructo-1-kinase beta-subunit; ATP binding,
fructose-6-phosphate bindi magnesium binding, citrate
binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Length = 941
Score = 142 bits (361), Expect = 6e-38
Identities = 38/189 (20%), Positives = 75/189 (39%), Gaps = 9/189 (4%)
Query: 149 IVTCGGLCPGINTVIREIV-CGLSYMYGVDEILGIEGGYRGFYSKNTLT-LSPKVVNDIH 206
I+ G G+N+ + + +S + I G+ G ++ ++ +
Sbjct: 576 IINVGAPAGGMNSAVYSMATYCMSRGH---VPYAIHNGFSGLARHESVRSINWLDIEGWG 632
Query: 207 KRGGTILRTSR---GGHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRG-LQ 262
GG+ + T+R D I E G + + ++GG + + L+
Sbjct: 633 SLGGSEIGTNRTLPNDADIGMIAYFFEKYGFDGLILVGGFEAFISLHQLERARINYPSLR 692
Query: 263 VAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVESVENGVGIVKLMGRYSGF 322
+ + IP TI N++ + S G DT + + + N V +V++ G SG+
Sbjct: 693 IPLVLIPATISNNVPGTEYSLGSDTCLNSFMEYCDVIKQSAAATRNRVFVVEVQGGNSGY 752
Query: 323 ISMYATLAS 331
I+ +A LA
Sbjct: 753 IATHAQLAC 761
Score = 131 bits (332), Expect = 5e-34
Identities = 62/293 (21%), Positives = 105/293 (35%), Gaps = 52/293 (17%)
Query: 78 HLTNFLPDLPSYPNPLKKSQAYAVVKQTFVSPEDAVAQNIVIQKD-----SPRGVHFRRA 132
L + + PN + + Y V D + +++ +
Sbjct: 111 LLKDGGHPVQQSPNEISPFEVYTV---------DPLG-SLIGFSGFKNPFAVNERSLLPK 160
Query: 133 GPREKVYFKSDEVRAC---------IVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIE 183
EK Y D+ ++T GG PG+N +R +V Y G ++ I
Sbjct: 161 VSEEKAYRAEDDSEKLLNPVRKTIGVMTSGGDSPGMNPFVRAVVRAGIY-KGC-KVFCIH 218
Query: 184 GGYRGFYSKNTLTLSP---KVVNDIHKRGGTILRTSRGGHDTN-----KIVDNIEDRGIN 235
GY G + V GGT + T+R K N+ D GI+
Sbjct: 219 EGYEGLVRGGEKYIKETQWHDVRGWLVEGGTNIGTARCKEFRERSGRLKACKNMIDMGID 278
Query: 236 QVYIIGGDGTQKGAALIYKE-----------------VEKRGLQVAVAGIPKTIDNDIAV 278
+ + GGDG+ GA E + + G +IDND++
Sbjct: 279 ALIVCGGDGSLTGADRFRSEWPSLIEELLQTEQISQQQFNTHQNLNICGAVGSIDNDMSS 338
Query: 279 IDKSFGFDTAVEEAQRAINAAHVEVESVENGVGIVKLMGRYSGFISMYATLAS 331
D + G ++++ RAI+ S IV++MGR+ G++ + A LA+
Sbjct: 339 TDATIGAFSSLDRICRAIDYIDATANSHSR-AFIVEVMGRHCGWLGLLAGLAT 390
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 47.7 bits (113), Expect = 4e-06
Identities = 52/321 (16%), Positives = 86/321 (26%), Gaps = 142/321 (44%)
Query: 50 RQNRPVVVAV--RSSNQKVHNDGFVLEDVPHLTNFLPDLPSYPNPLKKSQA----YAVVK 103
+ V R+ N GF + D+ + N P + +K + Y+
Sbjct: 1636 YKTSKAAQDVWNRADNHFKDTYGFSILDI-VINN--PVNLTIHFGGEKGKRIRENYS--A 1690
Query: 104 QTFVSPEDAVAQNIVIQKDSPRGVHFRRAGPREKVY-FKSDEVRACIVTCGGLC------ 156
F + D + I F+ Y F+S++ GL
Sbjct: 1691 MIFETIVDGKLKTEKI---------FKEINEHSTSYTFRSEK---------GLLSATQFT 1732
Query: 157 -PGINTV-------IRE--------IVCGLSYMYGVDEILGIEGGYRGFYS-----KNTL 195
P + + ++ G S LG E Y+ + +
Sbjct: 1733 QPALTLMEKAAFEDLKSKGLIPADATFAGHS--------LG-E------YAALASLADVM 1777
Query: 196 TLSP--KVVNDIHKRG---------GTILRTSRG-------------------------G 219
++ +VV RG + R++ G G
Sbjct: 1778 SIESLVEVV---FYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVG 1834
Query: 220 HDTNKIV----DNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVA-----GIPK 270
T +V N+E NQ Y+ GD R L + K
Sbjct: 1835 KRTGWLVEIVNYNVE----NQQYVAAGD--------------LRALDTVTNVLNFIKLQK 1876
Query: 271 TIDNDIAVIDKSFGFDTAVEE 291
I DI + KS + VE
Sbjct: 1877 -I--DIIELQKSLSLE-EVEG 1893
Score = 42.7 bits (100), Expect = 2e-04
Identities = 57/328 (17%), Positives = 98/328 (29%), Gaps = 115/328 (35%)
Query: 69 DGFVLEDVPH-----LTNFLPDLPSYPNPLKKSQAYAVVK-------QTFVSPED--AVA 114
+GF +D P + FL + S P K Q V+ ++ D A+A
Sbjct: 46 EGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALA 105
Query: 115 QNIVIQKDSPRGVHFRRAGPREKVYFKSDEVRACIVTCGGLCPGINT-VIREIVCGLSYM 173
++ + D+ K Y A I+ N+ + R + G + +
Sbjct: 106 AKLLQENDTTLVKTKELI----KNYI-----TARIMAKRPFDKKSNSALFRAVGEGNAQL 156
Query: 174 YGV-----------DEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILRTSRGGHDT 222
+ +E+ R Y T V + I T+ R D
Sbjct: 157 VAIFGGQGNTDDYFEEL-------RDLYQ----TYHVLVGDLIKFSAETLSELIRTTLDA 205
Query: 223 NKI----------VDNIEDR----------------GINQV--YIIGGDGTQKGAALIYK 254
K+ ++N + G+ Q+ Y++ T K
Sbjct: 206 EKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVV----TAKLLGFTPG 261
Query: 255 EVEKR---------GLQVAVAGIPKTIDNDIAVID--KSFGFDTAVE----------EAQ 293
E+ GL AVA IA D +SF F + +
Sbjct: 262 ELRSYLKGATGHSQGLVTAVA---------IAETDSWESF-FVSVRKAITVLFFIGVRCY 311
Query: 294 RA-----INAAHVEVESVENGVGIVKLM 316
A + + +E +S+EN G+ M
Sbjct: 312 EAYPNTSLPPSILE-DSLENNEGVPSPM 338
Score = 40.0 bits (93), Expect = 0.001
Identities = 36/212 (16%), Positives = 55/212 (25%), Gaps = 77/212 (36%)
Query: 8 RSLSRSPSPSISPFNSKRMI-----------LNPVFHKFNFDSRNFEIK-PLVSRQNRPV 55
L IS N + + LN K K P Q+R
Sbjct: 358 SHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRK---------AKAPSGLDQSR-- 406
Query: 56 VVAVRSSNQKVHNDGFVLEDVPHLTNFLP-DLP---SYPNPLKKSQAYAVVKQTFVSPED 111
+ S +K+ F FLP P L A ++ +D
Sbjct: 407 ---IPFSERKLK---FS-------NRFLPVASPFHSHL---LVP--ASDLIN------KD 442
Query: 112 AVAQNIVIQKDSPR--------GVHFRRAGP-----------REKVYF-KSDEVRA-CIV 150
V N+ + G R R V + + + +A I+
Sbjct: 443 LVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHIL 502
Query: 151 TCG-GLCPGINTVIREIVCGLSYMYGVDEILG 181
G G G+ + G GV I+
Sbjct: 503 DFGPGGASGLGVLTHRNKDG----TGVRVIVA 530
Score = 38.9 bits (90), Expect = 0.002
Identities = 43/245 (17%), Positives = 83/245 (33%), Gaps = 85/245 (34%)
Query: 90 PNP------LKKSQAYAVVKQTFVS-PEDAVAQNIVIQ-KDSPRGVHFRRAGPREKVYFK 141
P+P L + Q V +T P + + I + + + +GP + +Y
Sbjct: 335 PSPMLSISNLTQEQVQDYVNKTNSHLPAG---KQVEISLVNGAK--NLVVSGPPQSLY-- 387
Query: 142 SDEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVD--EILG----IEGGYRG------F 189
G+N +R+ G+D I ++ R F
Sbjct: 388 ----------------GLNLTLRKAKAP----SGLDQSRIPFSERKLKFSNRFLPVASPF 427
Query: 190 YSKNTLTLSP---KVVNDIHKRGGTI----LRT----SRGGHDTNKIVDNIEDRGINQV- 237
+S L P + D+ K + ++ + G D + +I +R ++ +
Sbjct: 428 HSH---LLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCII 484
Query: 238 ---------------YIIG-GDGTQKG-AALIYKEVEKRGLQVAVAGIPKTIDNDIAVID 280
+I+ G G G L ++ + G++V VAG T+D + D
Sbjct: 485 RLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAG---TLDIN---PD 538
Query: 281 KSFGF 285
+GF
Sbjct: 539 DDYGF 543
Score = 36.2 bits (83), Expect = 0.015
Identities = 35/195 (17%), Positives = 57/195 (29%), Gaps = 72/195 (36%)
Query: 190 YSKNTLTLSP-KVVND------IHKRG--GTILR------TSRGGHDTNKIVDNIEDRGI 234
+ K+T S +V + IH G G +R D + I + I
Sbjct: 1652 HFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKI-FKEI 1710
Query: 235 NQV---YIIGGDG--------TQKGAAL------IYKEVEKRGLQV---AVAGIPKTIDN 274
N+ Y + TQ AL +++++ +GL AG
Sbjct: 1711 NEHSTSYTFRSEKGLLSATQFTQ--PALTLMEKAAFEDLKSKGLIPADATFAG------- 1761
Query: 275 DIAVIDKSFG-FDTAVEEAQRAINAAHVEVESVENGVGIVKLMGRY-----------SGF 322
S G + A+ A+ +V S+E+ V +V G
Sbjct: 1762 ------HSLGEY-AAL--------ASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSN 1806
Query: 323 ISMYATLASRDVVRC 337
M A R
Sbjct: 1807 YGMIAINPGRVAASF 1821
Score = 27.7 bits (61), Expect = 8.0
Identities = 9/40 (22%), Positives = 18/40 (45%), Gaps = 7/40 (17%)
Query: 285 FDTAVEEAQRAINAAHVEVESVENGVGIVKLMGRYSGFIS 324
F+ + E AA E + +L+G++ G++S
Sbjct: 37 FNKILPEPTEGF-AADDEPTTP------AELVGKFLGYVS 69
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 46.4 bits (109), Expect = 9e-06
Identities = 45/326 (13%), Positives = 88/326 (26%), Gaps = 92/326 (28%)
Query: 8 RSLSRSPSPSISPFNSKRMIL---NPVFHKFNFDSRNFEIKPLVSRQNRPVVVAVRSSNQ 64
++ R PS + +R L N VF K+N VSR Q
Sbjct: 99 KTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYN-----------VSRL------------Q 135
Query: 65 KVHNDGFVLEDVPHLTNFLPDLPSYPNPLKKSQAYAVV-------KQTFVSPEDAVAQNI 117
L L +L + ++ K V +
Sbjct: 136 PYLK----------LRQALLEL--------RPAKNVLIDGVLGSGKTWVAL---DVCLSY 174
Query: 118 VIQKDSPRGVHFRRAGPREKVYFKSDEVRACIVTCGGLCPGINTVIREIVCGLSYMYGV- 176
+Q + + + + L I+ + +
Sbjct: 175 KVQCKMDFKIFWLNLK-------NCNSPETVLEMLQKLLYQIDPNWTS---RSDHSSNIK 224
Query: 177 DEILGIEGGYRGF-----YSKNTLTL----SPKVVN--DIHKRGGTILRTSRGGHDTNKI 225
I I+ R Y L L + K N ++ + IL T+R T+
Sbjct: 225 LRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCK---ILLTTRFKQVTD-F 280
Query: 226 VDNIEDRGINQVYIIGGDGTQKGAALIYK--EVEKRGL-QVAVAGIPKTIDNDIAVIDKS 282
+ I+ + + +L+ K + + L + + P+ +++I +S
Sbjct: 281 LSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRR----LSIIAES 336
Query: 283 FGFDTAVEEAQRAINAAHVEVESVEN 308
+ N HV + +
Sbjct: 337 I-----RDGLATWDNWKHVNCDKLTT 357
Score = 39.8 bits (92), Expect = 0.001
Identities = 52/369 (14%), Positives = 110/369 (29%), Gaps = 97/369 (26%)
Query: 2 DHSISSRSLSRSPSPSISPFNSKRM------ILNPVFHKFNFDSRNFEIKPLVSRQNRPV 55
DHS + + S + + +L V + +++ N K L++ + + V
Sbjct: 218 DHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQV 277
Query: 56 VVAVRSSNQKV-----HNDGFVLEDVPHL-TNFL----PDLPS---YPNPLKKSQAYAVV 102
+ ++ H+ ++V L +L DLP NP + S +
Sbjct: 278 TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESI 337
Query: 103 KQTFVSPE-----DAVAQNIVIQKDSPRGVHFRRAGPRE-KVYFKS-----DEVRACIVT 151
+ + + + +I+ P E + F +
Sbjct: 338 RDGLATWDNWKHVNCDKLTTIIESS------LNVLEPAEYRKMFDRLSVFPPSAH---IP 388
Query: 152 CGGLC----PGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLS--PKVVND- 204
L I + + +V L L + S ++ L K+ N+
Sbjct: 389 TILLSLIWFDVIKSDVMVVVNKL-----HKYSLVEKQPKESTISIPSIYLELKVKLENEY 443
Query: 205 -IHKRGGTIL---RTSRGGHDTNKIVDNIEDRGINQVYI---IGGDGTQKGAALIY--KE 255
+H+ I+ + D++ ++ D+ Y IG + K
Sbjct: 444 ALHRS---IVDHYNIPK-TFDSDDLIPPYLDQ-----YFYSHIG-----------HHLKN 483
Query: 256 VEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVESVENGVGIVKL 315
+E + + F F +E+ R + A S+ N + +K
Sbjct: 484 IEHPER---MTLFRMVFLD--------FRF---LEQKIRHDSTAWNASGSILNTLQQLKF 529
Query: 316 MGRYSGFIS 324
Y +I
Sbjct: 530 ---YKPYIC 535
Score = 30.6 bits (68), Expect = 0.92
Identities = 12/80 (15%), Positives = 27/80 (33%), Gaps = 8/80 (10%)
Query: 64 QKVHNDGFVLEDVPHLTNFLPDLPSYPNPLKKSQAY--AVVK--QTFVSPEDAVAQNIVI 119
QK+ +D + N L L Y + + +V F+ + +N++
Sbjct: 505 QKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLP---KIEENLIC 561
Query: 120 QKDSPRGVHFRRAGPREKVY 139
K + + E ++
Sbjct: 562 SKYT-DLLRIALMAEDEAIF 580
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich
domain 2, protein-ADP COM transferase; HET: ADP; 2.30A
{Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Length = 337
Score = 31.6 bits (72), Expect = 0.32
Identities = 18/107 (16%), Positives = 34/107 (31%), Gaps = 13/107 (12%)
Query: 199 PKVVNDIHKRGG--TILRTSRGGHDTNKIVDNIEDRGINQVYIIGGDGT--QKGAALIYK 254
P + + K G + T + G T + + + GGDGT + +
Sbjct: 45 PDALIKLEKAGYETSAYATEKIGDAT-LEAERAMHENYDVLIAAGGDGTLNEVVNGIA-- 101
Query: 255 EVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHV 301
++ + + IP ND ++ + A I H
Sbjct: 102 ---EKPNRPKLGVIPMGTVNDFG---RALHIPNDIMGALDVIIEGHS 142
>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli}
SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A
Length = 332
Score = 31.2 bits (71), Expect = 0.49
Identities = 25/107 (23%), Positives = 41/107 (38%), Gaps = 11/107 (10%)
Query: 199 PKVVNDIHKRGG--TILRTSRGGHDTNKIVDNIEDRGINQVYIIGGDGT--QKGAALIYK 254
+ + + + G + T G + V+ G+ V GGDGT + ALI
Sbjct: 47 REAIMLLREEGMTIHVRVTWEKGDAA-RYVEEARKFGVATVIAGGGDGTINEVSTALIQC 105
Query: 255 EVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHV 301
E + A+ +P ND A S G A+++A + A
Sbjct: 106 EGDDI---PALGILPLGTANDFA---TSVGIPEALDKALKLAIAGDA 146
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell
division inhibitor, MINC, MINE, cell hydrolase; HET:
ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Length = 260
Score = 28.8 bits (65), Expect = 2.6
Identities = 25/97 (25%), Positives = 39/97 (40%), Gaps = 10/97 (10%)
Query: 229 IEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDK----SFG 284
I+D+ +YI+ T+ AL + V K V K +D + V D G
Sbjct: 75 IKDKRTENLYILPASQTRDKDALTREGVAK------VLDDLKAMDFEFIVCDSPAGIETG 128
Query: 285 FDTAVEEAQRAINAAHVEVESVENGVGIVKLMGRYSG 321
A+ A AI + EV SV + I+ ++ S
Sbjct: 129 ALMALYFADEAIITTNPEVSSVRDSDRILGILASKSR 165
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA
polymerase, translation, transferase-RNA complex; HET:
GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A*
3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G*
1efu_B
Length = 1289
Score = 28.4 bits (63), Expect = 3.9
Identities = 10/22 (45%), Positives = 13/22 (59%), Gaps = 2/22 (9%)
Query: 286 DTAVEEAQRA--INAAHVEVES 305
D A EE R IN +HVE ++
Sbjct: 335 DNAPEEKARGITINTSHVEYDT 356
>3eua_A Putative fructose-aminoacid-6-phosphate deglycase; putative
phosphosugar isomerase, structural genomics, joint for
structural genomics, JCSG; HET: MSE FLC; 1.90A {Bacillus
subtilis}
Length = 329
Score = 27.6 bits (62), Expect = 5.7
Identities = 6/55 (10%), Positives = 21/55 (38%), Gaps = 4/55 (7%)
Query: 214 RTSRGGHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYK---EVEKRGLQVAV 265
T++ + + +++ + I+ V+ + G K + E + + +
Sbjct: 5 ATAKVNREVQAFLQDLKGKTIDHVFFVAC-GGSSAIMYPSKYVFDRESKSINSDL 58
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation
factor, protein synthesis, antibiotic, GTP-binding,
nucleotide-binding; HET: GNP PUL; 1.4A {Thermus
thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB:
2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z*
2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A*
2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Length = 405
Score = 27.5 bits (62), Expect = 6.0
Identities = 12/22 (54%), Positives = 13/22 (59%), Gaps = 2/22 (9%)
Query: 286 DTAVEEAQRA--INAAHVEVES 305
D A EE R IN AHVE E+
Sbjct: 51 DKAPEERARGITINTAHVEYET 72
>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved
protein, rossmann fold, structural genomics, NPPSFA;
HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*
Length = 180
Score = 27.1 bits (61), Expect = 6.2
Identities = 10/78 (12%), Positives = 20/78 (25%), Gaps = 15/78 (19%)
Query: 226 VDNIEDRGINQVYIIGGDGTQKGAALI-----------YKEVEKRGLQVAVAGIPKTIDN 274
V + D G + +G +K L+ + +RG + +T
Sbjct: 78 VKGVRDMG-GVFEVETEEGVEKAERLLLCTHKDPTLPSLLGLTRRGAYIDTDEGGRTSYP 136
Query: 275 DIAVIDKSFGFDTAVEEA 292
+ V
Sbjct: 137 RVYAA---GVARGKVPGH 151
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding
protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1
b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Length = 397
Score = 27.5 bits (62), Expect = 6.7
Identities = 12/22 (54%), Positives = 13/22 (59%), Gaps = 2/22 (9%)
Query: 286 DTAVEEAQRA--INAAHVEVES 305
D A EE R INAAHVE +
Sbjct: 42 DNAPEERARGITINAAHVEYST 63
>1hqm_D DNA-directed RNA polymerase; transferase, transcription, 3D-
structure; 3.30A {Thermus aquaticus} SCOP: i.8.1.1 PDB:
1i6v_D* 2gho_D
Length = 1265
Score = 27.6 bits (62), Expect = 8.1
Identities = 10/85 (11%), Positives = 24/85 (28%), Gaps = 9/85 (10%)
Query: 162 VIREIVCG------LSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKRGGTILR- 214
V+RE CG + + R + + ++ G +
Sbjct: 847 VVREADCGTTKYISVPLFQMDEVT--RTLRLRKRSDIESGLYGRVLAREVEALGRRLEEG 904
Query: 215 TSRGGHDTNKIVDNIEDRGINQVYI 239
D + ++ E + +V +
Sbjct: 905 RYLSLEDVHFLIKAAEAGEVREVPV 929
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.137 0.397
Gapped
Lambda K H
0.267 0.0500 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,217,919
Number of extensions: 336504
Number of successful extensions: 945
Number of sequences better than 10.0: 1
Number of HSP's gapped: 875
Number of HSP's successfully gapped: 46
Length of query: 337
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 243
Effective length of database: 4,077,219
Effective search space: 990764217
Effective search space used: 990764217
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.3 bits)