RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 019697
(337 letters)
>d2f48a1 c.89.1.1 (A:4-553) Pyrophosphate-dependent
phosphofructokinase {Lyme disease spirochete (Borrelia
burgdorferi) [TaxId: 139]}
Length = 550
Score = 185 bits (470), Expect = 1e-54
Identities = 61/261 (23%), Positives = 109/261 (41%), Gaps = 17/261 (6%)
Query: 87 PSYPNPLKKSQAYAVVKQTFVSPEDAVAQNIVIQKDSPR-----GVHFRRAGPREKVYFK 141
P PN LKK + + + +A+ +++ + F
Sbjct: 12 PKLPNILKK--DFNNISLVYGENTEAIQDRQALKEFFKNTYGLPIISFTEGESSLS---F 66
Query: 142 SDEVRACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKV 201
S + I+ GG PG + VI + + ++ G +GG G + + L+ +
Sbjct: 67 SKALNIGIILSGGPAPGGHNVISGVFDAIKKFNPNSKLFGFKGGPLGLLENDKIELTESL 126
Query: 202 VNDIHKRGGTILRTSRGGH-----DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEV 256
+N GG + +S NK + ++ +N + IIGGD + AA++ +
Sbjct: 127 INSYRNTGGFDIVSSGRTKIETEEHYNKALFVAKENNLNAIIIIGGDDSNTNAAILAEYF 186
Query: 257 EKRGLQVAVAGIPKTIDNDIA--VIDKSFGFDTAVEEAQRAINAAHVEVESVENGVGIVK 314
+K G + V G+PKTID D+ I+ SFGFD+A + I + S + VK
Sbjct: 187 KKNGENIQVIGVPKTIDADLRNDHIEISFGFDSATKIYSELIGNLCRDAMSTKKYWHFVK 246
Query: 315 LMGRYSGFISMYATLASRDVV 335
LMGR + +++ L + +
Sbjct: 247 LMGRSASHVALECALKTHPNI 267
>d4pfka_ c.89.1.1 (A:) ATP-dependent phosphofructokinase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 319
Score = 137 bits (346), Expect = 1e-38
Identities = 62/191 (32%), Positives = 97/191 (50%), Gaps = 14/191 (7%)
Query: 146 RACIVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDI 205
R ++T GG PG+N IR +V +Y E+ G+ GY G + N L V DI
Sbjct: 3 RIGVLTSGGDSPGMNAAIRSVV--RKAIYHGVEVYGVYHGYAGLIAGNIKKLEVGDVGDI 60
Query: 206 HKRGGTILRTSRGGH-----DTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRG 260
RGGTIL T+R K ++ ++ GI + +IGGDG+ +GA + +
Sbjct: 61 IHRGGTILYTARCPEFKTEEGQKKGIEQLKKHGIQGLVVIGGDGSYQGAKKLTEHGFP-- 118
Query: 261 LQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVESVENGVGIVKLMGRYS 320
G+P TIDNDI D + GFDTA+ AI+ + + ++++MGR++
Sbjct: 119 ----CVGVPGTIDNDIPGTDFTIGFDTALNTVIDAIDKIR-DTATSHERTYVIEVMGRHA 173
Query: 321 GFISMYATLAS 331
G I++++ LA
Sbjct: 174 GDIALWSGLAG 184
>d1pfka_ c.89.1.1 (A:) ATP-dependent phosphofructokinase
{Escherichia coli [TaxId: 562]}
Length = 320
Score = 133 bits (335), Expect = 5e-37
Identities = 60/186 (32%), Positives = 96/186 (51%), Gaps = 14/186 (7%)
Query: 149 IVTCGGLCPGINTVIREIVCGLSYMYGVDEILGIEGGYRGFYSKNTLTLSPKVVNDIHKR 208
++T GG PG+N IR +V S + E++GI GY G Y + L V+D+ R
Sbjct: 7 VLTSGGDAPGMNAAIRGVV--RSALTEGLEVMGIYDGYLGLYEDRMVQLDRYSVSDMINR 64
Query: 209 GGTILRTSRGGHDTNK-----IVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEKRGLQV 263
GGT L ++R ++ ++N++ RGI+ + +IGGDG+ GA + +
Sbjct: 65 GGTFLGSARFPEFRDENIRAVAIENLKKRGIDALVVIGGDGSYMGAMRLTEMGFP----- 119
Query: 264 AVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEVESVENGVGIVKLMGRYSGFI 323
G+P TIDNDI D + GF TA+ AI+ S + +V++MGRY G +
Sbjct: 120 -CIGLPGTIDNDIKGTDYTIGFFTALSTVVEAIDRLRDTSSS-HQRISVVEVMGRYCGDL 177
Query: 324 SMYATL 329
++ A +
Sbjct: 178 TLAAAI 183
>d2qv7a1 e.52.1.2 (A:1-312) Diacylglycerol kinase DgkB
{Staphylococcus aureus [TaxId: 1280]}
Length = 312
Score = 32.7 bits (73), Expect = 0.053
Identities = 17/80 (21%), Positives = 25/80 (31%), Gaps = 6/80 (7%)
Query: 199 PKVVNDIHKRGG--TILRTSRGGHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEV 256
P + + K G + T + G T + + + GGDGT E
Sbjct: 23 PDALIKLEKAGYETSAYATEKIGDAT-LEAERAMHENYDVLIAAGGDGTLNEVVNGIAEK 81
Query: 257 EKRGLQVAVAGIPKTIDNDI 276
R + IP ND
Sbjct: 82 PNR---PKLGVIPMGTVNDF 98
>d2bona1 e.52.1.2 (A:5-299) Lipid kinase YegS {Escherichia coli
[TaxId: 562]}
Length = 295
Score = 31.5 bits (70), Expect = 0.12
Identities = 24/103 (23%), Positives = 41/103 (39%), Gaps = 5/103 (4%)
Query: 200 KVVNDIHKRGGTI-LRTSRGGHDTNKIVDNIEDRGINQVYIIGGDGTQKGAALIYKEVEK 258
+ + + + G TI +R + D + V+ G+ V GGDGT + + E
Sbjct: 19 EAIMLLREEGMTIHVRVTWEKGDAARYVEEARKFGVATVIAGGGDGTINEVSTALIQCEG 78
Query: 259 RGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHV 301
A+ +P ND A S G A+++A + A
Sbjct: 79 DD-IPALGILPLGTANDFA---TSVGIPEALDKALKLAIAGDA 117
>d2qalc2 d.53.1.1 (C:106-206) Ribosomal protein S3 C-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 101
Score = 27.5 bits (61), Expect = 0.79
Identities = 13/42 (30%), Positives = 16/42 (38%), Gaps = 2/42 (4%)
Query: 113 VAQNIVIQKDSPRGVHFRRAGPREKVYFKSDEVRACIVTCGG 154
VA +I Q + R V FRRA R + V G
Sbjct: 10 VADSITSQLE--RRVMFRRAMKRAVQNAMRLGAKGIKVEVSG 49
>d2uubc2 d.53.1.1 (C:107-207) Ribosomal protein S3 C-terminal domain
{Thermus thermophilus [TaxId: 274]}
Length = 101
Score = 26.0 bits (57), Expect = 2.9
Identities = 10/42 (23%), Positives = 14/42 (33%), Gaps = 2/42 (4%)
Query: 113 VAQNIVIQKDSPRGVHFRRAGPREKVYFKSDEVRACIVTCGG 154
VAQ + Q + R RRA + + V G
Sbjct: 10 VAQRVAEQIE--RRFAVRRAIKQAVQRVMESGAKGAKVIVSG 49
>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia
coli [TaxId: 562]}
Length = 311
Score = 25.7 bits (55), Expect = 7.6
Identities = 16/71 (22%), Positives = 27/71 (38%), Gaps = 14/71 (19%)
Query: 237 VYIIGGDGTQKGAALIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAI 296
+ I+G G A GL+ A+A + IA+I K + + A+
Sbjct: 8 LAIVGA-----GGA---------GLRAAIAAAQANPNAKIALISKVYPMRSHTVAAEGGS 53
Query: 297 NAAHVEVESVE 307
A + +S E
Sbjct: 54 AAVAQDHDSFE 64
>d1oaoc_ e.26.1.3 (C:) Bifunctional carbon monoxide
dehydrogenase/acetyl-CoA synthase (CODH/ACS) alpha (ACS)
subunit {Moorella thermoacetica [TaxId: 1525]}
Length = 729
Score = 25.9 bits (57), Expect = 9.8
Identities = 10/53 (18%), Positives = 21/53 (39%), Gaps = 7/53 (13%)
Query: 239 IIGGDGTQKGAALIYKEVEKRGLQVAVAG--IPKTIDNDIAVIDKSFGFDTAV 289
I+G K A I KE+ G + + + + ++ ++ + G D
Sbjct: 159 ILGRAKDSKALAKIVKELMGMGFMLFICDEAVEQLLEENVKL-----GIDYIA 206
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.137 0.397
Gapped
Lambda K H
0.267 0.0522 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,252,460
Number of extensions: 60959
Number of successful extensions: 151
Number of sequences better than 10.0: 1
Number of HSP's gapped: 144
Number of HSP's successfully gapped: 13
Length of query: 337
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 251
Effective length of database: 1,226,816
Effective search space: 307930816
Effective search space used: 307930816
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.7 bits)