BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 019698
         (337 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2CVE|A Chain A, Crystal Structure Of A Conserved Hypothetical Protein
           Tt1547 From Thermus Thermophilus Hb8
          Length = 191

 Score = 28.1 bits (61), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 17/42 (40%), Positives = 23/42 (54%)

Query: 151 VVVASYGEININWIGVVYQMGGVVGEALRLIFMEILVKRKGL 192
           +VV  +G + +   G+V   GGV  EALR      LV+R GL
Sbjct: 89  LVVRYFGGVKLGAGGLVRAYGGVAAEALRRAPKVPLVERVGL 130


>pdb|3PBL|A Chain A, Structure Of The Human Dopamine D3 Receptor In Complex
           With Eticlopride
 pdb|3PBL|B Chain B, Structure Of The Human Dopamine D3 Receptor In Complex
           With Eticlopride
          Length = 481

 Score = 27.7 bits (60), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 14/57 (24%), Positives = 35/57 (61%), Gaps = 6/57 (10%)

Query: 34  KWVLSSKEINFPFPLGLTLLHMVFSSVLCFLLTK----VFKVMKVEDGMTLEIYTTS 86
            +V+ S  ++F  P G+T+L  V++ +   L  +    +F+++++++G+ L+IY  +
Sbjct: 196 DFVIYSSVVSFYLPFGVTVL--VYARIYVVLKQRRRKNIFEMLRIDEGLRLKIYKDT 250


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.331    0.142    0.431 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,393,145
Number of Sequences: 62578
Number of extensions: 256508
Number of successful extensions: 505
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 504
Number of HSP's gapped (non-prelim): 4
length of query: 337
length of database: 14,973,337
effective HSP length: 99
effective length of query: 238
effective length of database: 8,778,115
effective search space: 2089191370
effective search space used: 2089191370
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 52 (24.6 bits)