Query 019698
Match_columns 337
No_of_seqs 118 out of 1429
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 03:49:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019698.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019698hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00817 tpt Tpt phosphate/ph 100.0 3E-36 6.4E-41 270.5 27.5 286 14-309 2-296 (302)
2 PTZ00343 triose or hexose phos 100.0 1.8E-35 3.9E-40 269.2 31.4 289 12-307 47-349 (350)
3 KOG1441 Glucose-6-phosphate/ph 100.0 1.7E-35 3.7E-40 259.1 16.5 302 7-313 10-314 (316)
4 PLN00411 nodulin MtN21 family 100.0 3.9E-32 8.4E-37 246.3 31.4 301 9-318 8-340 (358)
5 PRK11272 putative DMT superfam 100.0 3.1E-27 6.8E-32 210.8 30.2 279 8-308 6-287 (292)
6 PF06027 DUF914: Eukaryotic pr 100.0 2.3E-27 5.1E-32 210.7 28.8 277 27-313 26-312 (334)
7 PRK11689 aromatic amino acid e 100.0 2.1E-27 4.6E-32 212.1 27.9 269 11-307 5-288 (295)
8 PRK15430 putative chlorampheni 100.0 1.7E-27 3.7E-32 212.8 27.3 284 1-308 1-287 (296)
9 KOG1443 Predicted integral mem 100.0 4.4E-28 9.5E-33 204.7 21.8 295 5-304 7-313 (349)
10 PRK11453 O-acetylserine/cystei 100.0 2.5E-26 5.5E-31 205.6 29.9 275 12-308 6-289 (299)
11 KOG1444 Nucleotide-sugar trans 100.0 7.9E-27 1.7E-31 200.0 22.3 300 8-315 6-309 (314)
12 PRK10532 threonine and homoser 100.0 5.6E-26 1.2E-30 202.8 28.5 270 11-310 13-285 (293)
13 PF08449 UAA: UAA transporter 100.0 5.4E-26 1.2E-30 203.7 27.9 276 27-311 13-302 (303)
14 TIGR00950 2A78 Carboxylate/Ami 100.0 7.6E-26 1.6E-30 198.9 26.7 254 30-301 5-259 (260)
15 KOG1442 GDP-fucose transporter 99.9 1.4E-26 3.1E-31 192.4 3.4 305 6-314 20-335 (347)
16 TIGR03340 phn_DUF6 phosphonate 99.9 2.5E-22 5.5E-27 178.3 23.3 268 25-303 12-280 (281)
17 TIGR00688 rarD rarD protein. T 99.9 1.6E-21 3.4E-26 171.0 24.4 247 13-280 5-255 (256)
18 COG0697 RhaT Permeases of the 99.9 1.4E-19 3E-24 161.4 31.2 276 10-307 7-288 (292)
19 COG5070 VRG4 Nucleotide-sugar 99.9 1.9E-21 4E-26 157.4 16.5 287 17-315 9-305 (309)
20 KOG2765 Predicted membrane pro 99.9 1.1E-19 2.4E-24 158.1 22.7 228 84-312 159-396 (416)
21 COG5006 rhtA Threonine/homoser 99.9 1.4E-19 2.9E-24 149.6 21.5 250 32-307 30-283 (292)
22 KOG1581 UDP-galactose transpor 99.9 7.2E-19 1.6E-23 149.3 24.3 294 8-310 8-317 (327)
23 COG2962 RarD Predicted permeas 99.8 1.5E-18 3.3E-23 147.2 25.6 283 9-312 6-289 (293)
24 TIGR00776 RhaT RhaT L-rhamnose 99.8 1.5E-17 3.2E-22 147.9 25.5 265 13-307 4-289 (290)
25 KOG1582 UDP-galactose transpor 99.8 4.7E-18 1E-22 141.6 15.1 288 9-308 38-334 (367)
26 KOG1580 UDP-galactose transpor 99.8 2E-18 4.4E-23 141.0 11.8 255 43-305 49-312 (337)
27 KOG2234 Predicted UDP-galactos 99.8 1.1E-15 2.5E-20 133.5 28.9 282 21-311 22-327 (345)
28 KOG3912 Predicted integral mem 99.8 1.4E-16 3E-21 133.5 20.6 279 23-306 12-334 (372)
29 PF04142 Nuc_sug_transp: Nucle 99.7 2.9E-16 6.3E-21 135.3 21.0 209 80-296 14-243 (244)
30 KOG4510 Permease of the drug/m 99.7 1.3E-18 2.9E-23 144.7 3.9 266 23-307 47-326 (346)
31 KOG1583 UDP-N-acetylglucosamin 99.7 4.6E-16 1E-20 130.3 11.5 256 47-311 33-319 (330)
32 PF03151 TPT: Triose-phosphate 99.7 1.7E-15 3.8E-20 122.1 13.5 141 165-306 1-153 (153)
33 KOG2766 Predicted membrane pro 99.7 1E-16 2.2E-21 132.7 6.2 265 30-313 34-306 (336)
34 COG2510 Predicted membrane pro 99.3 3.2E-11 7E-16 89.7 10.9 121 30-156 19-139 (140)
35 PF00892 EamA: EamA-like trans 99.3 1.9E-11 4.2E-16 94.6 8.8 119 28-154 5-124 (126)
36 TIGR00803 nst UDP-galactose tr 99.3 4.9E-11 1.1E-15 102.2 11.7 191 108-304 2-222 (222)
37 KOG4314 Predicted carbohydrate 99.3 3E-11 6.6E-16 96.7 9.5 224 78-308 47-278 (290)
38 PF13536 EmrE: Multidrug resis 99.2 8.2E-11 1.8E-15 89.5 7.7 108 52-160 2-110 (113)
39 PF00892 EamA: EamA-like trans 99.2 2.2E-10 4.7E-15 88.7 10.2 125 174-305 1-125 (126)
40 COG2510 Predicted membrane pro 99.2 3.4E-10 7.3E-15 84.4 10.4 135 165-305 4-138 (140)
41 PF06800 Sugar_transport: Suga 99.1 2.2E-08 4.7E-13 86.3 21.2 209 81-303 43-268 (269)
42 PRK15430 putative chlorampheni 98.8 1.1E-07 2.4E-12 85.1 14.5 140 159-305 3-144 (296)
43 TIGR00688 rarD rarD protein. T 98.8 1.4E-07 3.1E-12 82.6 14.7 135 165-305 3-141 (256)
44 TIGR00950 2A78 Carboxylate/Ami 98.8 2E-07 4.4E-12 81.7 15.7 119 27-152 141-260 (260)
45 TIGR03340 phn_DUF6 phosphonate 98.8 1.2E-07 2.6E-12 84.2 14.3 133 166-306 3-135 (281)
46 PF05653 Mg_trans_NIPA: Magnes 98.6 9.3E-07 2E-11 78.7 12.7 64 93-156 59-122 (300)
47 PLN00411 nodulin MtN21 family 98.5 2.2E-06 4.9E-11 78.3 14.3 136 166-306 15-156 (358)
48 PF03151 TPT: Triose-phosphate 98.5 1.1E-05 2.5E-10 64.6 15.0 136 19-155 5-152 (153)
49 PRK13499 rhamnose-proton sympo 98.4 0.00021 4.5E-09 64.4 24.0 217 85-306 74-341 (345)
50 PRK15051 4-amino-4-deoxy-L-ara 98.4 3.8E-06 8.3E-11 63.3 10.5 64 92-155 45-108 (111)
51 PRK10532 threonine and homoser 98.4 1E-05 2.2E-10 72.3 15.1 123 23-155 157-280 (293)
52 PRK02971 4-amino-4-deoxy-L-ara 98.3 1.9E-05 4.2E-10 61.0 13.1 119 165-307 3-123 (129)
53 COG4975 GlcU Putative glucose 98.3 1.9E-07 4.2E-12 77.8 1.5 267 11-307 3-286 (288)
54 PRK11272 putative DMT superfam 98.3 2.7E-05 5.8E-10 69.6 15.1 108 47-156 177-285 (292)
55 PRK11689 aromatic amino acid e 98.2 3.9E-05 8.5E-10 68.7 14.5 127 19-156 161-287 (295)
56 TIGR00817 tpt Tpt phosphate/ph 98.2 1.1E-05 2.4E-10 72.4 10.6 135 19-156 150-293 (302)
57 PTZ00343 triose or hexose phos 98.2 7.1E-05 1.5E-09 68.6 15.4 138 163-306 48-186 (350)
58 PRK11453 O-acetylserine/cystei 98.1 9.9E-05 2.1E-09 66.2 15.2 125 166-306 6-132 (299)
59 PF13536 EmrE: Multidrug resis 98.1 3.7E-05 8.1E-10 58.3 10.0 70 237-308 38-108 (113)
60 COG2962 RarD Predicted permeas 98.0 8.2E-05 1.8E-09 64.2 11.8 141 162-308 5-146 (293)
61 PF08449 UAA: UAA transporter 97.9 0.00027 5.9E-09 63.5 14.1 131 175-311 11-141 (303)
62 PRK15051 4-amino-4-deoxy-L-ara 97.9 0.00059 1.3E-08 51.4 13.2 58 247-305 51-108 (111)
63 TIGR00776 RhaT RhaT L-rhamnose 97.9 0.00021 4.5E-09 63.7 11.6 131 165-307 2-137 (290)
64 COG0697 RhaT Permeases of the 97.8 0.0017 3.7E-08 57.5 16.2 141 162-310 5-147 (292)
65 PRK02971 4-amino-4-deoxy-L-ara 97.7 0.00014 3.1E-09 56.2 7.3 71 87-157 51-123 (129)
66 PF06027 DUF914: Eukaryotic pr 97.7 0.0011 2.3E-08 59.8 14.0 142 163-308 12-153 (334)
67 KOG2922 Uncharacterized conser 97.7 0.00033 7.1E-09 61.3 10.0 66 91-156 71-136 (335)
68 PF04657 DUF606: Protein of un 97.7 0.0037 7.9E-08 49.0 14.9 131 166-303 3-138 (138)
69 PRK10452 multidrug efflux syst 97.5 0.00045 9.8E-09 52.5 7.0 70 87-156 33-103 (120)
70 PRK09541 emrE multidrug efflux 97.4 0.00091 2E-08 50.1 7.7 68 89-156 35-103 (110)
71 PRK10452 multidrug efflux syst 97.4 0.0012 2.5E-08 50.2 8.1 59 249-308 46-105 (120)
72 PRK10650 multidrug efflux syst 97.3 0.0031 6.6E-08 47.1 9.3 68 87-154 38-106 (109)
73 COG3238 Uncharacterized protei 97.2 0.022 4.8E-07 44.8 13.9 139 163-306 4-146 (150)
74 PRK11431 multidrug efflux syst 97.2 0.0026 5.6E-08 47.2 8.3 68 88-155 33-101 (105)
75 COG5006 rhtA Threonine/homoser 97.2 0.0074 1.6E-07 51.2 11.8 129 17-154 151-280 (292)
76 COG2076 EmrE Membrane transpor 97.2 0.0021 4.5E-08 47.3 7.3 69 87-155 33-102 (106)
77 PRK10650 multidrug efflux syst 97.2 0.013 2.8E-07 43.7 11.6 55 250-305 52-107 (109)
78 PRK09541 emrE multidrug efflux 97.1 0.0036 7.9E-08 46.9 8.1 57 250-307 47-104 (110)
79 PF04142 Nuc_sug_transp: Nucle 97.1 0.002 4.3E-08 55.8 7.6 76 234-310 18-93 (244)
80 PF00893 Multi_Drug_Res: Small 96.9 0.0077 1.7E-07 43.8 7.8 58 90-147 35-93 (93)
81 PRK13499 rhamnose-proton sympo 96.8 0.011 2.4E-07 53.5 10.1 142 163-310 6-157 (345)
82 PF06800 Sugar_transport: Suga 96.7 0.031 6.6E-07 48.7 11.7 66 86-151 197-266 (269)
83 COG2076 EmrE Membrane transpor 96.7 0.018 4E-07 42.3 8.4 57 250-307 47-104 (106)
84 PRK11431 multidrug efflux syst 96.6 0.02 4.4E-07 42.4 8.6 56 250-306 46-102 (105)
85 PF04657 DUF606: Protein of un 96.6 0.13 2.7E-06 40.4 13.3 129 18-153 5-138 (138)
86 PF07857 DUF1632: CEO family ( 96.6 0.0083 1.8E-07 51.8 7.1 133 165-311 1-139 (254)
87 KOG4510 Permease of the drug/m 96.5 0.00072 1.6E-08 57.6 0.3 135 164-309 38-172 (346)
88 KOG1441 Glucose-6-phosphate/ph 96.5 0.0054 1.2E-07 54.8 5.7 139 15-156 164-307 (316)
89 PF05653 Mg_trans_NIPA: Magnes 96.4 0.022 4.7E-07 51.0 9.1 118 162-306 5-122 (300)
90 TIGR00803 nst UDP-galactose tr 96.3 0.12 2.6E-06 44.1 13.0 68 86-153 154-221 (222)
91 KOG2234 Predicted UDP-galactos 96.1 0.22 4.8E-06 44.7 13.3 140 166-306 17-164 (345)
92 KOG1580 UDP-galactose transpor 95.9 0.037 8.1E-07 46.5 7.4 133 173-311 22-162 (337)
93 PF10639 UPF0546: Uncharacteri 95.9 0.028 6E-07 42.1 6.0 64 91-154 48-112 (113)
94 PF00893 Multi_Drug_Res: Small 95.4 0.058 1.3E-06 39.1 6.0 49 248-297 44-93 (93)
95 KOG1581 UDP-galactose transpor 94.5 0.27 5.9E-06 43.1 8.7 135 16-153 174-310 (327)
96 COG4975 GlcU Putative glucose 93.7 0.04 8.7E-07 46.7 1.9 132 165-309 3-139 (288)
97 PF04342 DUF486: Protein of un 93.3 2 4.4E-05 31.4 9.8 61 94-154 45-106 (108)
98 COG3238 Uncharacterized protei 93.1 3.6 7.7E-05 32.5 11.9 131 18-154 9-144 (150)
99 KOG1444 Nucleotide-sugar trans 92.0 1.1 2.4E-05 39.7 8.5 137 17-156 160-300 (314)
100 COG5070 VRG4 Nucleotide-sugar 91.9 1.9 4.2E-05 36.2 9.3 101 47-148 185-288 (309)
101 PF06379 RhaT: L-rhamnose-prot 91.8 2.7 5.8E-05 37.9 10.8 143 163-313 6-160 (344)
102 KOG4314 Predicted carbohydrate 91.1 0.2 4.3E-06 41.0 2.8 66 245-311 65-130 (290)
103 PF10639 UPF0546: Uncharacteri 91.1 2.6 5.6E-05 31.6 8.5 52 251-303 59-111 (113)
104 KOG2765 Predicted membrane pro 88.4 4.2 9.2E-05 37.0 9.2 141 11-158 248-392 (416)
105 KOG3912 Predicted integral mem 83.4 15 0.00033 32.2 9.7 66 239-305 92-157 (372)
106 PF05297 Herpes_LMP1: Herpesvi 81.0 0.49 1.1E-05 41.0 0.0 94 107-203 46-143 (381)
107 PRK02237 hypothetical protein; 80.1 21 0.00047 26.3 8.5 40 118-157 67-106 (109)
108 PF02694 UPF0060: Uncharacteri 79.7 22 0.00048 26.2 8.1 40 118-157 65-104 (107)
109 PRK02237 hypothetical protein; 78.8 4.8 0.0001 29.7 4.5 46 262-308 62-107 (109)
110 KOG1442 GDP-fucose transporter 77.7 5.8 0.00013 34.6 5.4 108 44-151 212-322 (347)
111 PF02694 UPF0060: Uncharacteri 77.2 5.1 0.00011 29.5 4.2 46 262-308 60-105 (107)
112 COG1742 Uncharacterized conser 71.7 37 0.00081 24.9 8.5 39 119-157 67-105 (109)
113 TIGR00892 2A0113 monocarboxyla 71.5 72 0.0016 30.2 12.0 19 318-336 437-455 (455)
114 KOG2922 Uncharacterized conser 71.0 1 2.2E-05 40.0 -0.8 121 161-309 18-139 (335)
115 PF07857 DUF1632: CEO family ( 69.6 76 0.0017 27.7 11.8 101 47-156 27-134 (254)
116 PF04342 DUF486: Protein of un 64.3 7.6 0.00017 28.5 2.7 29 274-303 77-105 (108)
117 KOG4831 Unnamed protein [Funct 59.4 11 0.00023 27.7 2.8 61 94-154 62-123 (125)
118 COG3169 Uncharacterized protei 53.2 34 0.00073 24.8 4.4 31 273-304 83-113 (116)
119 COG3169 Uncharacterized protei 52.1 89 0.0019 22.7 9.9 51 104-154 62-113 (116)
120 PRK13108 prolipoprotein diacyl 51.9 1.2E+02 0.0025 29.1 9.1 24 286-309 254-277 (460)
121 COG1742 Uncharacterized conser 50.9 54 0.0012 24.1 5.2 44 263-307 62-105 (109)
122 PF07444 Ycf66_N: Ycf66 protei 50.3 16 0.00036 25.7 2.4 28 286-313 5-32 (84)
123 PF11044 TMEMspv1-c74-12: Plec 48.8 27 0.00058 21.1 2.8 17 286-302 2-18 (49)
124 KOG1582 UDP-galactose transpor 47.3 68 0.0015 28.2 6.1 50 109-158 285-334 (367)
125 TIGR02865 spore_II_E stage II 46.6 3.5E+02 0.0076 27.9 13.3 45 111-155 11-55 (764)
126 PF05961 Chordopox_A13L: Chord 43.0 28 0.0006 23.2 2.5 26 287-312 3-28 (68)
127 PF09852 DUF2079: Predicted me 39.7 3.4E+02 0.0074 25.8 11.2 121 44-180 56-187 (449)
128 COG1971 Predicted membrane pro 39.1 42 0.00092 27.7 3.6 45 258-303 39-84 (190)
129 cd01324 cbb3_Oxidase_CcoQ Cyto 38.9 41 0.0009 20.9 2.7 27 288-314 13-39 (48)
130 COG3086 RseC Positive regulato 37.9 62 0.0013 25.4 4.1 26 255-280 70-95 (150)
131 TIGR00836 amt ammonium transpo 37.5 3.6E+02 0.0077 25.4 15.6 54 122-178 241-295 (403)
132 KOG4812 Golgi-associated prote 36.5 1.4E+02 0.0031 25.6 6.3 72 234-305 161-238 (262)
133 PF00909 Ammonium_transp: Ammo 35.5 3.8E+02 0.0081 25.1 16.6 25 162-186 274-299 (399)
134 COG5336 Uncharacterized protei 34.3 1.2E+02 0.0026 22.5 4.9 37 270-306 56-92 (116)
135 PRK06638 NADH:ubiquinone oxido 28.8 3.4E+02 0.0074 22.6 10.8 30 276-306 135-166 (198)
136 PF09964 DUF2198: Uncharacteri 28.5 2E+02 0.0043 19.7 5.7 52 134-189 18-70 (74)
137 PF15471 TMEM171: Transmembran 27.4 50 0.0011 28.7 2.3 21 288-308 161-181 (319)
138 KOG4016 Synaptic vesicle prote 27.3 3.3E+02 0.0071 23.0 6.8 59 5-68 102-160 (233)
139 PRK11357 frlA putative fructos 27.0 5.4E+02 0.012 24.2 11.5 20 291-310 418-437 (445)
140 PHA03049 IMV membrane protein; 26.8 70 0.0015 21.3 2.4 26 287-312 3-28 (68)
141 TIGR00905 2A0302 transporter, 26.8 3.1E+02 0.0066 26.2 7.9 22 288-309 416-437 (473)
142 PRK10666 ammonium transporter; 25.8 5.8E+02 0.013 24.2 16.6 76 132-210 274-350 (428)
143 PF15102 TMEM154: TMEM154 prot 25.1 58 0.0013 25.6 2.1 23 291-313 66-88 (146)
144 TIGR03644 marine_trans_1 proba 25.0 5.8E+02 0.013 24.0 15.1 62 121-185 254-316 (404)
145 PRK12437 prolipoprotein diacyl 25.0 53 0.0011 28.9 2.1 21 286-306 235-255 (269)
146 PF07123 PsbW: Photosystem II 24.9 77 0.0017 24.5 2.7 31 160-190 102-132 (138)
147 COG4736 CcoQ Cbb3-type cytochr 24.6 1.3E+02 0.0027 19.8 3.3 24 289-312 13-36 (60)
148 PF08507 COPI_assoc: COPI asso 24.0 3.4E+02 0.0073 20.9 9.7 30 272-303 73-102 (136)
149 PF05977 MFS_3: Transmembrane 23.9 6.9E+02 0.015 24.4 18.0 27 255-281 342-368 (524)
150 PF05545 FixQ: Cbb3-type cytoc 23.6 1.1E+02 0.0024 18.8 2.9 20 291-310 15-34 (49)
151 TIGR01167 LPXTG_anchor LPXTG-m 23.2 1.1E+02 0.0024 16.8 2.6 17 286-302 10-26 (34)
152 PF04246 RseC_MucC: Positive r 22.9 1E+02 0.0022 23.8 3.2 25 257-281 65-89 (135)
153 PF07168 Ureide_permease: Urei 22.8 73 0.0016 28.5 2.5 19 170-188 2-20 (336)
154 PF07578 LAB_N: Lipid A Biosyn 22.0 2.7E+02 0.0059 19.0 6.0 48 169-217 2-49 (72)
155 PF06123 CreD: Inner membrane 21.9 6.9E+02 0.015 23.7 12.3 58 130-189 317-376 (430)
156 KOG1443 Predicted integral mem 21.9 6E+02 0.013 23.0 11.6 49 106-154 265-313 (349)
157 KOG1623 Multitransmembrane pro 21.8 3.9E+02 0.0086 23.1 6.7 79 120-199 79-163 (243)
158 KOG1583 UDP-N-acetylglucosamin 21.1 84 0.0018 27.8 2.5 48 265-313 97-144 (330)
No 1
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=100.00 E-value=3e-36 Score=270.45 Aligned_cols=286 Identities=23% Similarity=0.295 Sum_probs=234.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhhcccccCCChhhhhhHhHHHHHH
Q 019698 14 LTYAYILLYIALSSGQIFFNKWVLSSKEINFPFPLGLTLLHMVFSSVLCFLLTKVFKVMKVEDGMTLEIYTTSVIPIGAM 93 (337)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~p~~~~~~r~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (337)
.....+..|+..|.++++.||++++ ++++|..+++.|+.++.+.+.+. +..+. +++++.++++ +++.++.|++
T Consensus 2 ~~~~~~~~w~~~~~~~~~~NK~~l~----~~~~P~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~-~~~~~~~g~~ 74 (302)
T TIGR00817 2 QTGLLFGLWYFLNVYFNIYNKKLLN----VFPYPYFKTLISLAVGSLYCLLS-WSSGL-PKRLKISSAL-LKLLLPVAIV 74 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh----hCChhHHHHHHHHHHHHHHHHHH-HHhCC-CCCCCCCHHH-HHHHHHHHHH
Confidence 4567889999999999999999999 78889999999999987776554 21222 2233455665 5689999999
Q ss_pred HHHHHHhhhhhhhcccHhHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHhhhheeeeecCccchHHHHHHHHHHH
Q 019698 94 FAMTLWLGNTAYLYISVAFAQMLKAIMPVAVFILGVAAGLEVMSCRMLLIMSVISFGVVVASYGEININWIGVVYQMGGV 173 (337)
Q Consensus 94 ~~~~~~~~~~al~~~~~~~~~ii~~~~Pv~~~l~~~~~~~er~~~~~~~~i~l~~~G~~l~~~~~~~~~~~G~i~~l~s~ 173 (337)
++....+.|.+++|+|++.++++++++|+++++++++++|||++++++.+++++++|+.+...++.+.+..|++++++++
T Consensus 75 ~~~~~~~~~~~l~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~~~~~~~~~~G~~~~l~a~ 154 (302)
T TIGR00817 75 HTIGHVTSNVSLSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALASDTELSFNWAGFLSAMISN 154 (302)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhcCCcccccHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998877666667788999999999
Q ss_pred HHHHHHHHHHHHHhhhcCCCCChHHHHHHHhHHHHHHHHHHHHhhcccccccc--cc----cCc--cchHHHHHHH-HHH
Q 019698 174 VGEALRLIFMEILVKRKGLKLNPISVMYYVSPCSALCLFIPWIFLEKPKMDAL--ET----WHF--PPLMLTLNCL-CTF 244 (337)
Q Consensus 174 ~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~--~~----~~~--~~~~~~~~~i-~~~ 244 (337)
+++|+|.++.||..+++ ++++.+.+.|+...+++.++|.....|....... .. +.. .+...+..++ ...
T Consensus 155 ~~~a~~~v~~k~~~~~~--~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (302)
T TIGR00817 155 ITFVSRNIFSKKAMTIK--SLDKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTVSLVAAMGFFH 232 (302)
T ss_pred HHHHHHHHHHHHhhccC--CCCcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHHHHHHHHHHHH
Confidence 99999999999987632 5799999999999999888888766554322110 01 111 1111223333 333
Q ss_pred HHHHHHHHHHhhcchhHHHHHhhhhhHHHhhhhHhccCCcccchhhHHHHHHHHHHHHHhhhccc
Q 019698 245 ALNLSVFLVISHTSALTIRVAGVVKDWVVVLFSALLFADTKLTIINLFGYGIAIAGVAAYNNHKL 309 (337)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~t~~~~~G~~li~~gv~l~~~~~~ 309 (337)
..+..++.++++++|++.++..+++|++++++|++++||+ +|+.+++|.++++.|+++|++.|.
T Consensus 233 ~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~-lt~~~~~G~~lil~Gv~l~~~~k~ 296 (302)
T TIGR00817 233 FYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTK-ISPQQVFGTGIAIAGVFLYSRVKA 296 (302)
T ss_pred HHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCC-CchhHHHHHHHHHHHHHHHHHHhc
Confidence 3455667899999999999999999999999999999999 999999999999999999987644
No 2
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=100.00 E-value=1.8e-35 Score=269.17 Aligned_cols=289 Identities=20% Similarity=0.289 Sum_probs=243.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhhcccccCCC-hhhhhhHhHHH
Q 019698 12 QVLTYAYILLYIALSSGQIFFNKWVLSSKEINFPFPLGLTLLHMVFSSVLCFLLTKVFKVMKVEDGMT-LEIYTTSVIPI 90 (337)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~p~~~~~~r~~~a~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 90 (337)
.+....++..|+.+|...+..||++++ .+|+|++++++|++++.+++.+.+. .+.++ .++.+ +++.++..++.
T Consensus 47 ~~~~~~~~~~wy~~s~~~~~~nK~vl~----~~~~P~~l~~~~~~~~~l~~~~~~~-~~~~~-~~~~~~~~~~~~~llp~ 120 (350)
T PTZ00343 47 KWKLALLFLTWYALNVLYVVDNKLALN----MLPLPWTISSLQLFVGWLFALLYWA-TGFRK-IPRIKSLKLFLKNFLPQ 120 (350)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHH----hCChhHHHHHHHHHHHHHHHHHHHH-hCCCC-CCCCCCHHHHHHHHHHH
Confidence 677889999999999999999999999 7899999999999999887655432 22222 22332 55567899999
Q ss_pred HHHHHHHHHhhhhhhhcccHhHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHhhhheeeeecCccchHHHHHHHH
Q 019698 91 GAMFAMTLWLGNTAYLYISVAFAQMLKAIMPVAVFILGVAAGLEVMSCRMLLIMSVISFGVVVASYGEININWIGVVYQM 170 (337)
Q Consensus 91 ~~~~~~~~~~~~~al~~~~~~~~~ii~~~~Pv~~~l~~~~~~~er~~~~~~~~i~l~~~G~~l~~~~~~~~~~~G~i~~l 170 (337)
|+++.......+.|+++++++.++++++++|+++++++++++|||++++++.+++++++|+.+.+.++.++++.|+++++
T Consensus 121 gl~~~~~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~~~~~~~~~G~~~~l 200 (350)
T PTZ00343 121 GLCHLFVHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASVKELHFTWLAFWCAM 200 (350)
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheecccchhHHHHHHHHH
Confidence 99987777778899999999999999999999999999999999999999999999999999998888888899999999
Q ss_pred HHHHHHHHHHHHHHHHhhhcC---CCCChHHHHHHHhHHHHHHHHHHHHhhccccccc--------ccccC--ccchHHH
Q 019698 171 GGVVGEALRLIFMEILVKRKG---LKLNPISVMYYVSPCSALCLFIPWIFLEKPKMDA--------LETWH--FPPLMLT 237 (337)
Q Consensus 171 ~s~~~~a~~~v~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~--------~~~~~--~~~~~~~ 237 (337)
+|++++|+|+++.||..++++ .++++.+...++.+.+++.++|.....|...... ...+. ...+.++
T Consensus 201 ~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~i~ 280 (350)
T PTZ00343 201 LSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNYTKGIIIFKIF 280 (350)
T ss_pred HHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccccchHHHHHHHH
Confidence 999999999999999987643 2467888888888899988888776665432110 01111 1123455
Q ss_pred HHHHHHHHHHHHHHHHHhhcchhHHHHHhhhhhHHHhhhhHhccCCcccchhhHHHHHHHHHHHHHhhhc
Q 019698 238 LNCLCTFALNLSVFLVISHTSALTIRVAGVVKDWVVVLFSALLFADTKLTIINLFGYGIAIAGVAAYNNH 307 (337)
Q Consensus 238 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~t~~~~~G~~li~~gv~l~~~~ 307 (337)
.+++..++.|.+.++++++++|.+.++.++++|+++++.|++++||+ +|+.+++|.++++.|+++|++.
T Consensus 281 ~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~-lt~~~~iG~~lii~Gv~lYs~~ 349 (350)
T PTZ00343 281 FSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQ-VTLLGYLGMAVAILGALLYSLF 349 (350)
T ss_pred HHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCC-CchHhHHHHHHHHHHHHHHhhc
Confidence 66777777788888999999999999999999999999999999999 9999999999999999999875
No 3
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=100.00 E-value=1.7e-35 Score=259.13 Aligned_cols=302 Identities=35% Similarity=0.568 Sum_probs=261.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhhcccccCCChhhhhhH
Q 019698 7 RMFREQVLTYAYILLYIALSSGQIFFNKWVLSSKEINFPFPLGLTLLHMVFSSVLCFLLTKVFKVMKVEDGMTLEIYTTS 86 (337)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~p~~~~~~r~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 86 (337)
...++..........|++++.+.+..||++++ ++++++|.+++..+...+.+. ..+.+..+..+++ +.+.+.+++.
T Consensus 10 ~~~~~~~~~~~~~~~w~~~~v~~~~~nK~il~--~~~f~~p~~lt~~~~~~~~l~-~~v~~~l~~~~~~-~~~~~~~~~~ 85 (316)
T KOG1441|consen 10 GQLKKILRIGIAFAIWYVLSVGVIILNKYILS--KYGFPFPITLTMLHLFCGALA-LLVIKVLKLVPPS-KISSKLPLRT 85 (316)
T ss_pred cccchhHHHHHHHHHHhhhheeeEEeeHhhhc--cCCCCCccHHHHHHHHHHHHH-HHHHHHhcCCCCC-ccccccchHH
Confidence 34557778888899999999999999999999 589999999999977766554 5555556655433 4445566789
Q ss_pred hHHHHHHHHHHHHhhhhhhhcccHhHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHhhhheeeeecCccchHHHH
Q 019698 87 VIPIGAMFAMTLWLGNTAYLYISVAFAQMLKAIMPVAVFILGVAAGLEVMSCRMLLIMSVISFGVVVASYGEININWIGV 166 (337)
Q Consensus 87 ~~~~~~~~~~~~~~~~~al~~~~~~~~~ii~~~~Pv~~~l~~~~~~~er~~~~~~~~i~l~~~G~~l~~~~~~~~~~~G~ 166 (337)
.++.++.++++.++.|.++.++|++.++.+++++|+++.++++++.+|++++..+++++..+.|+.+.+.+|.++|+.|.
T Consensus 86 llpl~~~~~~~~v~~n~Sl~~v~VsF~q~iKa~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV~ias~~e~~fn~~G~ 165 (316)
T KOG1441|consen 86 LLPLGLVFCISHVLGNVSLSYVPVSFYQTIKALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGVAIASVTELSFNLFGF 165 (316)
T ss_pred HHHHHHHHHHHHHhcchhhhccchhHHHHHHhhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeEEEeeeccccccHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCCCChHHHHHHHhHHHHHHHHHH-HHhhccccc--ccccccCccchHHHHHHHHH
Q 019698 167 VYQMGGVVGEALRLIFMEILVKRKGLKLNPISVMYYVSPCSALCLFIP-WIFLEKPKM--DALETWHFPPLMLTLNCLCT 243 (337)
Q Consensus 167 i~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~i~~ 243 (337)
+.++++.+..++++++.|++.+++++++++.+.+.|+..++.+.+++| ....|+... .....|+...+......+++
T Consensus 166 i~a~~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~sv~~ 245 (316)
T KOG1441|consen 166 ISAMISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWFVTFLILLLNSVLA 245 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhhcccceeeeeccccchhhHHHHHHHHHH
Confidence 999999999999999999999877779999999999999999999844 444454433 01223443345555556999
Q ss_pred HHHHHHHHHHHhhcchhHHHHHhhhhhHHHhhhhHhccCCcccchhhHHHHHHHHHHHHHhhhcccchhh
Q 019698 244 FALNLSVFLVISHTSALTIRVAGVVKDWVVVLFSALLFADTKLTIINLFGYGIAIAGVAAYNNHKLKKEA 313 (337)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~t~~~~~G~~li~~gv~l~~~~~~~~~~ 313 (337)
++.|...++++.+++|++.++.+.+|.++.++.|+++|+|+ .|+.+.+|.++.+.|+.+|++.+.++++
T Consensus 246 f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~p-vt~~n~~G~~iai~Gv~~Y~~~k~~~~~ 314 (316)
T KOG1441|consen 246 FLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNP-VTFLNALGYAIAILGVFLYSRAKLKEKK 314 (316)
T ss_pred HHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCC-CchhhHHHHHHHHHHHHHHHHHhhhhhc
Confidence 99999999999999999999999999999999999999998 9999999999999999999998766543
No 4
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=100.00 E-value=3.9e-32 Score=246.31 Aligned_cols=301 Identities=15% Similarity=0.131 Sum_probs=229.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhhcccccCCChhhhhhHhH
Q 019698 9 FREQVLTYAYILLYIALSSGQIFFNKWVLSSKEINFPFPLGLTLLHMVFSSVLCFLLTKVFKVMKVEDGMTLEIYTTSVI 88 (337)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~p~~~~~~r~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (337)
.++.......++.--..+.++....|..++ .+.+ |..+.++|+.++.++++++.+.+++.++.++.+++++. .+.
T Consensus 8 ~~~~~~~~~~~~~~q~~~~~~~~~~k~a~~---~G~~-~~~~~~~R~~iA~l~Ll~~~~~~~~~~~~~~~~~~~~~-~l~ 82 (358)
T PLN00411 8 WRREAVFLTAMLATETSVVGISTLFKVATS---KGLN-IYPFLGYSYLLASLLLLPSLFFTNRSRSLPPLSVSILS-KIG 82 (358)
T ss_pred hhhccchHHHHHHHHHHHHHHHHHHHHHHH---CCCC-ccHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHH-HHH
Confidence 455677788888888999999999999998 3777 99999999999999998887654432222333466543 555
Q ss_pred HHHHHHHHHHHhhhhhhhcccHhHHHHHHHHHHHHHHHHHHHh------cccccchhhHHHHHHHhhhheeeeec-C---
Q 019698 89 PIGAMFAMTLWLGNTAYLYISVAFAQMLKAIMPVAVFILGVAA------GLEVMSCRMLLIMSVISFGVVVASYG-E--- 158 (337)
Q Consensus 89 ~~~~~~~~~~~~~~~al~~~~~~~~~ii~~~~Pv~~~l~~~~~------~~er~~~~~~~~i~l~~~G~~l~~~~-~--- 158 (337)
..|++....+.+.+.+++|+|++.++++.++.|++++++++++ +|||+++++++|++++++|+.+.... +
T Consensus 83 l~g~~g~~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g~~~ 162 (358)
T PLN00411 83 LLGFLGSMYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYHGPRV 162 (358)
T ss_pred HHHHHHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHccCccc
Confidence 5666555566789999999999999999999999999999999 69999999999999999998875531 1
Q ss_pred --------------------ccch-HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChHHHHHHHhHHHHHHHHHHHHh
Q 019698 159 --------------------ININ-WIGVVYQMGGVVGEALRLIFMEILVKRKGLKLNPISVMYYVSPCSALCLFIPWIF 217 (337)
Q Consensus 159 --------------------~~~~-~~G~i~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~ 217 (337)
...+ ..|+.+.++|+++||+|++++|+..++++ +......++..++.+...++...
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~~~---~~~~~t~~~~~~~~~~~~~~~l~ 239 (358)
T PLN00411 163 FVASSPPYLNFRQLSPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMSEYP---AAFTVSFLYTVCVSIVTSMIGLV 239 (358)
T ss_pred ccccccccccccccccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---cHhHHHHHHHHHHHHHHHHHHHH
Confidence 0122 45999999999999999999999987542 33455556666666666555555
Q ss_pred hccccc-ccccccCccchHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhhhhHHHhhhhHhccCCcccchhhHHHHHH
Q 019698 218 LEKPKM-DALETWHFPPLMLTLNCLCTFALNLSVFLVISHTSALTIRVAGVVKDWVVVLFSALLFADTKLTIINLFGYGI 296 (337)
Q Consensus 218 ~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~t~~~~~G~~l 296 (337)
.|.... .....+....+.+++.++.+.+.+..+++++++.+|.+++++.+++|++++++|++++||+ +++.+++|.++
T Consensus 240 ~~~~~~~~~~~~~~~~~~~i~y~~i~t~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~-lt~~~~iG~~L 318 (358)
T PLN00411 240 VEKNNPSVWIIHFDITLITIVTMAIITSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDS-LYLGCLIGGIL 318 (358)
T ss_pred HccCCcccceeccchHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCC-CcHHHHHHHHH
Confidence 443211 1111222222334445555555666788999999999999999999999999999999999 99999999999
Q ss_pred HHHHHHHhhhcccchhhhhhcc
Q 019698 297 AIAGVAAYNNHKLKKEASRAIS 318 (337)
Q Consensus 297 i~~gv~l~~~~~~~~~~~~~~~ 318 (337)
++.|+++..+.++++.+++++.
T Consensus 319 Il~Gv~l~~~~~~~~~~~~~~~ 340 (358)
T PLN00411 319 ITLGFYAVMWGKANEEKDQLLS 340 (358)
T ss_pred HHHHHHHHHhhhhhhhhhcccC
Confidence 9999999887666655544443
No 5
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=99.96 E-value=3.1e-27 Score=210.78 Aligned_cols=279 Identities=14% Similarity=0.084 Sum_probs=206.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhhcccccCCChhhhhhHh
Q 019698 8 MFREQVLTYAYILLYIALSSGQIFFNKWVLSSKEINFPFPLGLTLLHMVFSSVLCFLLTKVFKVMKVEDGMTLEIYTTSV 87 (337)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~p~~~~~~r~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (337)
..+--.......++|+.. ....|...+ +.+ |..++++|+.+++++++++...+++ + ..+++++ ++.
T Consensus 6 ~~~~~~~~~~~~~iWg~~----~~~~K~~~~----~~~-p~~~~~~R~~~a~l~ll~~~~~~~~-~---~~~~~~~-~~~ 71 (292)
T PRK11272 6 LLPLFGALFALYIIWGST----YLVIRIGVE----SWP-PLMMAGVRFLIAGILLLAFLLLRGH-P---LPTLRQW-LNA 71 (292)
T ss_pred HHHHHHHHHHHHHHHhhH----HHHHHHHhc----cCC-HHHHHHHHHHHHHHHHHHHHHHhCC-C---CCcHHHH-HHH
Confidence 444455555556666655 457798888 788 9999999999999988877654322 1 1224443 355
Q ss_pred HHHHHH-HHHHHHhhhhhh-hcccHhHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHhhhheeeeec-CccchHH
Q 019698 88 IPIGAM-FAMTLWLGNTAY-LYISVAFAQMLKAIMPVAVFILGVAAGLEVMSCRMLLIMSVISFGVVVASYG-EININWI 164 (337)
Q Consensus 88 ~~~~~~-~~~~~~~~~~al-~~~~~~~~~ii~~~~Pv~~~l~~~~~~~er~~~~~~~~i~l~~~G~~l~~~~-~~~~~~~ 164 (337)
...|.+ ......+.+.+. +++|++.++++.++.|+++.+++.+ +|||++++++.+++++++|+.+...+ +.+.+..
T Consensus 72 ~~~g~~~~~~~~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~~~~~~~~~~ 150 (292)
T PRK11272 72 ALIGLLLLAVGNGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNSGGNLSGNPW 150 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhcCcccccchH
Confidence 556655 456677788888 9999999999999999999999986 69999999999999999999887643 3345567
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChHHHHHHHhHHHHHHHHHHHHhhcccccccccccCccchHHHHHHHHHH
Q 019698 165 GVVYQMGGVVGEALRLIFMEILVKRKGLKLNPISVMYYVSPCSALCLFIPWIFLEKPKMDALETWHFPPLMLTLNCLCTF 244 (337)
Q Consensus 165 G~i~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 244 (337)
|++++++++++||.|.++.||..++ ++.....++...+++.+.+.....+.+... ..+......++..+.+.+.
T Consensus 151 G~l~~l~a~~~~a~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~l~i~~s~ 224 (292)
T PRK11272 151 GAILILIASASWAFGSVWSSRLPLP-----VGMMAGAAEMLAAGVVLLIASLLSGERLTA-LPTLSGFLALGYLAVFGSI 224 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCC-----cchHHHHHHHHHHHHHHHHHHHHcCCcccc-cCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999997541 334455667667776665554433322111 1111111122333333344
Q ss_pred HHHHHHHHHHhhcchhHHHHHhhhhhHHHhhhhHhccCCcccchhhHHHHHHHHHHHHHhhhcc
Q 019698 245 ALNLSVFLVISHTSALTIRVAGVVKDWVVVLFSALLFADTKLTIINLFGYGIAIAGVAAYNNHK 308 (337)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~t~~~~~G~~li~~gv~l~~~~~ 308 (337)
..+..+++++++.++.+.+...+++|+++.+++++++||+ +|+.+++|.++++.|+++.+..+
T Consensus 225 ~~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~-~t~~~iiG~~lIi~gv~~~~~~~ 287 (292)
T PRK11272 225 IAISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGET-LSPIEWLALGVIVFAVVLVTLGK 287 (292)
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCC-CcHHHHHHHHHHHHHHHHHHHHH
Confidence 5555678899999999999999999999999999999999 99999999999999998876643
No 6
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=99.96 E-value=2.3e-27 Score=210.70 Aligned_cols=277 Identities=17% Similarity=0.195 Sum_probs=215.1
Q ss_pred HHHHHHHHHhhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhhcccccCCChhhhhhHhHHHHHHHHHHHHhhhhhhh
Q 019698 27 SGQIFFNKWVLSSKEINFPFPLGLTLLHMVFSSVLCFLLTKVFKVMKVEDGMTLEIYTTSVIPIGAMFAMTLWLGNTAYL 106 (337)
Q Consensus 27 ~~~~~~~k~~~~~~~~~~~~p~~~~~~r~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~ 106 (337)
.+..+.+..+-+ + +.+.|...++.-++...++..++...++..+...+.-++++| +.+..+++....+.+.+.|++
T Consensus 26 ~~t~~~s~~l~~--~-~~~~P~~Qs~~~Y~~l~~vy~~~~~~r~~~~~~~~~~~~~~w-~y~lla~~Dv~aN~~~v~a~~ 101 (334)
T PF06027_consen 26 TGTGTFSSLLAN--K-GVNIPTFQSFFNYVLLALVYTPILLYRRGFKKWLKVLKRPWW-KYFLLALLDVEANYLVVLAYQ 101 (334)
T ss_pred HhHHHHHHHHHh--c-CccCcHHHHHHHHHHHHHHHhhhhhhccccccchhhcchhHH-HHHHHHHHHHHHHHHHHHHhh
Confidence 334455556655 2 778898888888876655544443322222222222244444 677789999999999999999
Q ss_pred cccHhHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHhhhheeeeecC---------ccchHHHHHHHHHHHHHHH
Q 019698 107 YISVAFAQMLKAIMPVAVFILGVAAGLEVMSCRMLLIMSVISFGVVVASYGE---------ININWIGVVYQMGGVVGEA 177 (337)
Q Consensus 107 ~~~~~~~~ii~~~~Pv~~~l~~~~~~~er~~~~~~~~i~l~~~G~~l~~~~~---------~~~~~~G~i~~l~s~~~~a 177 (337)
|++++.++++.+.+.+++++++++++|+|+++.+++|+++++.|+.+....| .+....|+++++.++++||
T Consensus 102 yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~~~~~~~~~~~~~i~GDll~l~~a~lya 181 (334)
T PF06027_consen 102 YTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDVLSGSDSSSGSNPILGDLLALLGAILYA 181 (334)
T ss_pred cccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeecccccccCCCCCccchhHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999988776543 1234789999999999999
Q ss_pred HHHHHHHHHhhhcCCCCChHHHHHHHhHHHHHHHHHHHHhhcccccccccccCccc-hHHHHHHHHHHHHHHHHHHHHhh
Q 019698 178 LRLIFMEILVKRKGLKLNPISVMYYVSPCSALCLFIPWIFLEKPKMDALETWHFPP-LMLTLNCLCTFALNLSVFLVISH 256 (337)
Q Consensus 178 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~ 256 (337)
++++++|+..|+ .+..+...+..+++.++..+.....|....... .|.... .+++..+++.+......-..++.
T Consensus 182 ~~nV~~E~~v~~----~~~~~~lg~~Glfg~ii~~iq~~ile~~~i~~~-~w~~~~~~~~v~~~~~lf~~y~l~p~~l~~ 256 (334)
T PF06027_consen 182 VSNVLEEKLVKK----APRVEFLGMLGLFGFIISGIQLAILERSGIESI-HWTSQVIGLLVGYALCLFLFYSLVPIVLRM 256 (334)
T ss_pred HHHHHHHHhccc----CCHHHHHHHHHHHHHHHHHHHHHheehhhhhcc-CCChhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999984 478899999999999988877777777655432 343332 23333344444444445567999
Q ss_pred cchhHHHHHhhhhhHHHhhhhHhccCCcccchhhHHHHHHHHHHHHHhhhcccchhh
Q 019698 257 TSALTIRVAGVVKDWVVVLFSALLFADTKLTIINLFGYGIAIAGVAAYNNHKLKKEA 313 (337)
Q Consensus 257 ~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~t~~~~~G~~li~~gv~l~~~~~~~~~~ 313 (337)
.+|+..++...+.+..+++++++++|++ +++..++|.++++.|..+|+..+++.++
T Consensus 257 ssAt~~nLsLLTsd~~ali~~i~~f~~~-~~~ly~~af~lIiiG~vvy~~~~~~~~~ 312 (334)
T PF06027_consen 257 SSATFFNLSLLTSDFYALIIDIFFFGYK-FSWLYILAFALIIIGFVVYNLAESPEEE 312 (334)
T ss_pred CccceeehHHHHhhHHHHHHHHHhcCcc-ccHHHHHHHHHHHHHhheEEccCCcccc
Confidence 9999999999999999999999999999 9999999999999999999887655443
No 7
>PRK11689 aromatic amino acid exporter; Provisional
Probab=99.96 E-value=2.1e-27 Score=212.10 Aligned_cols=269 Identities=14% Similarity=0.089 Sum_probs=196.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhhcccccCCChhhhhhHhHHH
Q 019698 11 EQVLTYAYILLYIALSSGQIFFNKWVLSSKEINFPFPLGLTLLHMVFSSVLCFLLTKVFKVMKVEDGMTLEIYTTSVIPI 90 (337)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~p~~~~~~r~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (337)
..+..+..+.+|+.. ....|...+ +++ |..+.++|+.++.+++.++.. .+ + . +++.++..+..
T Consensus 5 ~~l~~l~a~~~Wg~~----~~~~k~~~~----~~~-P~~~~~~R~~~a~l~l~~~~~----~~-~--~-~~~~~~~~~~~ 67 (295)
T PRK11689 5 ATLIGLIAILLWSTM----VGLIRGVSE----SLG-PVGGAAMIYSVSGLLLLLTVG----FP-R--L-RQFPKRYLLAG 67 (295)
T ss_pred hhHHHHHHHHHHHHH----HHHHHHHHc----cCC-hHHHHHHHHHHHHHHHHHHcc----cc-c--c-ccccHHHHHHH
Confidence 344566666777766 447799888 788 999999999999888776521 11 1 1 11122344445
Q ss_pred HHHHHHHHHhhhhhhh----cccHhHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHhhhheeeeecCc-------
Q 019698 91 GAMFAMTLWLGNTAYL----YISVAFAQMLKAIMPVAVFILGVAAGLEVMSCRMLLIMSVISFGVVVASYGEI------- 159 (337)
Q Consensus 91 ~~~~~~~~~~~~~al~----~~~~~~~~ii~~~~Pv~~~l~~~~~~~er~~~~~~~~i~l~~~G~~l~~~~~~------- 159 (337)
++.+.....+.+.+++ ++++..+.++.++.|+++.+++++++|||++++++.+++++++|+.++..++.
T Consensus 68 ~l~~~~~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~ 147 (295)
T PRK11689 68 GLLFVSYEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGGDNGLSLAEL 147 (295)
T ss_pred hHHHHHHHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecCCccchhhhh
Confidence 5556667777777775 46778889999999999999999999999999999999999999988775432
Q ss_pred ----cchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChHHHHHHHhHHHHHHHHHHHHhhcccccccccccCccchH
Q 019698 160 ----NINWIGVVYQMGGVVGEALRLIFMEILVKRKGLKLNPISVMYYVSPCSALCLFIPWIFLEKPKMDALETWHFPPLM 235 (337)
Q Consensus 160 ----~~~~~G~i~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~ 235 (337)
+.+..|++++++++++||.|+++.||..++ +++..... ..+.+.+.++....+.+ ..+ .+++ .+..
T Consensus 148 ~~~~~~~~~G~~~~l~aa~~~A~~~v~~k~~~~~----~~~~~~~~---~~~~~~l~~~~~~~~~~-~~~-~~~~-~~~~ 217 (295)
T PRK11689 148 INNIASNPLSYGLAFIGAFIWAAYCNVTRKYARG----KNGITLFF---ILTALALWIKYFLSPQP-AMV-FSLP-AIIK 217 (295)
T ss_pred hhccccChHHHHHHHHHHHHHHHHHHHHhhccCC----CCchhHHH---HHHHHHHHHHHHHhcCc-ccc-CCHH-HHHH
Confidence 123569999999999999999999998653 35544322 22233333333332221 111 1111 1223
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhhhhHHHhhhhHhccCCcccchhhHHHHHHHHHHHHHhhhc
Q 019698 236 LTLNCLCTFALNLSVFLVISHTSALTIRVAGVVKDWVVVLFSALLFADTKLTIINLFGYGIAIAGVAAYNNH 307 (337)
Q Consensus 236 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~t~~~~~G~~li~~gv~l~~~~ 307 (337)
+.+.++.+...+..+++++|+.+|.+.+...+++|+++++++++++||+ +++.+++|.++++.|+.+....
T Consensus 218 l~~~~~~t~~~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~-~~~~~~iG~~lI~~gv~~~~~~ 288 (295)
T PRK11689 218 LLLAAAAMGFGYAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTP-LSFSFWQGVAMVTAGSLLCWLA 288 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCC-CcHHHHHHHHHHHHhHHHHhhh
Confidence 3344556666677788999999999999999999999999999999999 9999999999999999877553
No 8
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.96 E-value=1.7e-27 Score=212.78 Aligned_cols=284 Identities=12% Similarity=0.083 Sum_probs=199.4
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhhccc-ccCC-
Q 019698 1 MADRERRMFREQVLTYAYILLYIALSSGQIFFNKWVLSSKEINFPFPLGLTLLHMVFSSVLCFLLTKVFKVMKV-EDGM- 78 (337)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~p~~~~~~r~~~a~~~l~~~~~~~~~~~~-~~~~- 78 (337)
||+++ +.+..+..+...+.|+... ...|.. + +.+ |..+.++|++++.+++.++...+++.+. +++.
T Consensus 1 ~~~~~--~~~g~~~~l~a~~~wg~~~----~~~k~~-~----~~~-~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~ 68 (296)
T PRK15430 1 MDAKQ--TRQGVLLALAAYFIWGIAP----AYFKLI-Y----YVP-ADEILTHRVIWSFFFMVVLMSICRQWSYLKTLIQ 68 (296)
T ss_pred CCchh--hhhHHHHHHHHHHHHHHHH----HHHHHh-c----CCC-HHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHc
Confidence 55543 3455566666666666664 355865 5 577 9999999999998877666543322111 0001
Q ss_pred ChhhhhhHhHHHHHHHHHHHHhhhhhhhcccHhHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHhhhheeeeecC
Q 019698 79 TLEIYTTSVIPIGAMFAMTLWLGNTAYLYISVAFAQMLKAIMPVAVFILGVAAGLEVMSCRMLLIMSVISFGVVVASYGE 158 (337)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~ii~~~~Pv~~~l~~~~~~~er~~~~~~~~i~l~~~G~~l~~~~~ 158 (337)
++++. ......++..+....+++++++++|++.++++.++.|+++.+++++++|||++++++.++++++.|+.++...+
T Consensus 69 ~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~~~ 147 (296)
T PRK15430 69 TPQKI-FMLAVSAVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLWTF 147 (296)
T ss_pred CHHHH-HHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHc
Confidence 12222 23334556688889999999999999999999999999999999999999999999999999999999876432
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChHHHHHHHhHHHHHHHHHHHHhhccccc-ccccccCccchHHH
Q 019698 159 ININWIGVVYQMGGVVGEALRLIFMEILVKRKGLKLNPISVMYYVSPCSALCLFIPWIFLEKPKM-DALETWHFPPLMLT 237 (337)
Q Consensus 159 ~~~~~~G~i~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~-~~~~~~~~~~~~~~ 237 (337)
.+.+ +++++++++||.|.++.||..++. ..+......+....+.+...+. .+.+.. .....+. .+..++
T Consensus 148 ~~~~----~~~l~aa~~~a~~~i~~r~~~~~~--~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~-~~~~~~ 217 (296)
T PRK15430 148 GSLP----IIALGLAFSFAFYGLVRKKIAVEA--QTGMLIETMWLLPVAAIYLFAI---ADSSTSHMGQNPMS-LNLLLI 217 (296)
T ss_pred CCcc----HHHHHHHHHHHHHHHHHHhcCCCC--chhHHHHHHHHHHHHHHHHHHH---ccCCcccccCCcHH-HHHHHH
Confidence 2222 468889999999999999875422 2233333344444443332111 111111 0111111 123344
Q ss_pred HHHHHHHHHHHHHHHHHhhcchhHHHHHhhhhhHHHhhhhHhccCCcccchhhHHHHHHHHHHHHHhhhcc
Q 019698 238 LNCLCTFALNLSVFLVISHTSALTIRVAGVVKDWVVVLFSALLFADTKLTIINLFGYGIAIAGVAAYNNHK 308 (337)
Q Consensus 238 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~t~~~~~G~~li~~gv~l~~~~~ 308 (337)
..++.+...+.++++++++.+|.+.+.+.+++|+++.+++++++||+ +++.+++|+++++.|+.+...+.
T Consensus 218 ~~g~~t~i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~-~~~~~~~G~~lI~~~~~v~~~~~ 287 (296)
T PRK15430 218 AAGIVTTVPLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEK-PGADKMVTFAFIWVALAIFVMDA 287 (296)
T ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHHHHHHH
Confidence 44556667777889999999999999999999999999999999999 99999999999988887765543
No 9
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=99.96 E-value=4.4e-28 Score=204.66 Aligned_cols=295 Identities=25% Similarity=0.452 Sum_probs=261.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhhcc--cccCCChhh
Q 019698 5 ERRMFREQVLTYAYILLYIALSSGQIFFNKWVLSSKEINFPFPLGLTLLHMVFSSVLCFLLTKVFKVMK--VEDGMTLEI 82 (337)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~p~~~~~~r~~~a~~~l~~~~~~~~~~~--~~~~~~~~~ 82 (337)
+++++.++...+.++..|++++.+...++|+.-. ++++|+.++..|+++-.++.....+.+++.. .+.+.+|++
T Consensus 7 ~~~~~~~rV~~L~lVl~yY~~Si~Ltf~~~~~~~----~f~fPLf~ts~h~~v~flfa~~~~~l~~~~~~r~r~~~sw~~ 82 (349)
T KOG1443|consen 7 DNQFLMNRVLTLALVLLYYFLSIGLTFYFKWLTK----NFHFPLFVTSLHLAVKFLFAALSRRLYQCSVPRARVVLSWRD 82 (349)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc----CcCCchHHHHHHHHHHHHHHHHHHHHHhccCCccccCCcHHH
Confidence 4578889999999999999999999777777755 7999999999999998888877766655433 245788999
Q ss_pred hhhHhHHHHHHHHHHHHhhhhhhhcccHhHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHhhhheeeeecCccch
Q 019698 83 YTTSVIPIGAMFAMTLWLGNTAYLYISVAFAQMLKAIMPVAVFILGVAAGLEVMSCRMLLIMSVISFGVVVASYGEININ 162 (337)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~ii~~~~Pv~~~l~~~~~~~er~~~~~~~~i~l~~~G~~l~~~~~~~~~ 162 (337)
+.|+..|.++.-+....+.|++++|++.+.++..++++++|+.+++..+.=||+++.-...+.++..|+.+.+..+.++|
T Consensus 83 ~Lr~~aPtalata~DIGLSN~sl~yVtlSlYTM~KSSsi~FIllFs~if~lEk~~w~L~l~v~lI~~Glflft~KsTqf~ 162 (349)
T KOG1443|consen 83 YLRRLAPTALATALDIGLSNWSLEYVTLSLYTMTKSSSILFILLFSLIFKLEKFRWALVLIVLLIAVGLFLFTYKSTQFN 162 (349)
T ss_pred HHHHhhhhhhhhhcccccccceeeeeeeeeeeeccccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhheeEEEeccccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcC-CCCChHHHHHHHhHHHHHHHHHHHHhhcccccc-cccccC-----ccc--
Q 019698 163 WIGVVYQMGGVVGEALRLIFMEILVKRKG-LKLNPISVMYYVSPCSALCLFIPWIFLEKPKMD-ALETWH-----FPP-- 233 (337)
Q Consensus 163 ~~G~i~~l~s~~~~a~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~-~~~~~~-----~~~-- 233 (337)
..|..++..++++.++...+.++++++++ .+-+|.....+..+.+.+.++|....+|++... ....+. ..+
T Consensus 163 i~Gf~lv~~aS~~sGlRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~Ll~~~l~fEG~~~~~~s~~f~~~d~~~~~rv 242 (349)
T KOG1443|consen 163 IEGFFLVLAASLLSGLRWAFTQMLLRNQPSAKRNPIDTIFHLQPWMSIGLLPLSLLFEGLHLITSSSIFRFQDTGLILRV 242 (349)
T ss_pred ehhHHHHHHHHHhhhhhHHHHHHHHhcCccccCCCeeeHHHhhhHHHHHHHHHHHHHcccccchhhhHHHhcCccHHHHH
Confidence 99999999999999999999999999876 577899999999999999999988888876553 111111 111
Q ss_pred -hHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhhhhHHHhhhhHhccCCcccchhhHHHHHHHHHHHHHh
Q 019698 234 -LMLTLNCLCTFALNLSVFLVISHTSALTIRVAGVVKDWVVVLFSALLFADTKLTIINLFGYGIAIAGVAAY 304 (337)
Q Consensus 234 -~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~t~~~~~G~~li~~gv~l~ 304 (337)
..+..+|..+++.-.+-+..+.+++..+.++.+..+-+.+.+++..+.+|+ ++...|.|..++..|+.++
T Consensus 243 ~g~i~l~g~laF~l~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~-ls~lN~~Gl~i~~agi~~~ 313 (349)
T KOG1443|consen 243 IGLISLGGLLAFLLEFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQ-LSLLNWLGLAICLAGILLH 313 (349)
T ss_pred HHHHHHHHHHHHHHHHHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcc-hhhhHHHHHHHHHHHHHHh
Confidence 346677788888888888899999999999999999999999999999999 9999999999999999988
No 10
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=99.96 E-value=2.5e-26 Score=205.64 Aligned_cols=275 Identities=16% Similarity=0.150 Sum_probs=193.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhhcccccCCChhhhhhHhHHHH
Q 019698 12 QVLTYAYILLYIALSSGQIFFNKWVLSSKEINFPFPLGLTLLHMVFSSVLCFLLTKVFKVMKVEDGMTLEIYTTSVIPIG 91 (337)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~p~~~~~~r~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (337)
.+..+....+|+... ...|...+ +.+ |..+.++|+.++.+.++++.+ + + +.++ +..+..+
T Consensus 6 ~l~~l~~~~~Wg~~~----~~~k~~~~----~~~-p~~~~~~R~~~a~~~l~~~~~---~-~---~~~~----~~~~~~g 65 (299)
T PRK11453 6 GVLALLVVVVWGLNF----VVIKVGLH----NMP-PLMLAGLRFMLVAFPAIFFVA---R-P---KVPL----NLLLGYG 65 (299)
T ss_pred HHHHHHHHHHHhhhH----HHHHHHHh----cCC-HHHHHHHHHHHHHHHHHHHhc---C-C---CCch----HHHHHHH
Confidence 455666677777764 46688888 788 999999999988766555431 1 1 1112 2333344
Q ss_pred HH-HHHHHHhhhhhhhc-ccHhHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHhhhheeeeecC---ccchHHHH
Q 019698 92 AM-FAMTLWLGNTAYLY-ISVAFAQMLKAIMPVAVFILGVAAGLEVMSCRMLLIMSVISFGVVVASYGE---ININWIGV 166 (337)
Q Consensus 92 ~~-~~~~~~~~~~al~~-~~~~~~~ii~~~~Pv~~~l~~~~~~~er~~~~~~~~i~l~~~G~~l~~~~~---~~~~~~G~ 166 (337)
++ ......+.+.++++ .|++.+.++.++.|+++.+++++++|||++++++++++++++|+.+....+ .+.+..|+
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~~~~~~~~~~~G~ 145 (299)
T PRK11453 66 LTISFGQFAFLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIEDSLNGQHVAMLGF 145 (299)
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhccccCCCcchhHHHH
Confidence 43 33444566778887 689999999999999999999999999999999999999999998876532 22356799
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCCCChHHHHHHHhHHHHHHHHHHHHhhcccccc--cccccC-ccchHHHHHH-HH
Q 019698 167 VYQMGGVVGEALRLIFMEILVKRKGLKLNPISVMYYVSPCSALCLFIPWIFLEKPKMD--ALETWH-FPPLMLTLNC-LC 242 (337)
Q Consensus 167 i~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~-i~ 242 (337)
+++++++++|+.|.++.||..++.+ .........+....+.+.........|.+... ....++ ..++.+++.+ +.
T Consensus 146 ~l~l~aal~~a~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~i~~ 224 (299)
T PRK11453 146 MLTLAAAFSWACGNIFNKKIMSHST-RPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLMYLAFVA 224 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccC-ccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHHHHHHHHHH
Confidence 9999999999999999999865332 22233334444444333332222333332110 001111 1123333333 33
Q ss_pred HHHHHHHHHHHHhhcchhHHHHHhhhhhHHHhhhhHhccCCcccchhhHHHHHHHHHHHHHhhhcc
Q 019698 243 TFALNLSVFLVISHTSALTIRVAGVVKDWVVVLFSALLFADTKLTIINLFGYGIAIAGVAAYNNHK 308 (337)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~t~~~~~G~~li~~gv~l~~~~~ 308 (337)
+...+..+++.+++.++.+.+...+++|+++.+++++++||+ +++.+++|.++++.|+.+..+.+
T Consensus 225 t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~-~~~~~~iG~~lI~~gv~l~~~~~ 289 (299)
T PRK11453 225 TIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDER-LTGLQFLGAVLIMAGLYINVFGL 289 (299)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCC-ccHHHHHHHHHHHHHHHHHhcch
Confidence 444455577889999999999999999999999999999999 99999999999999998866544
No 11
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=7.9e-27 Score=199.99 Aligned_cols=300 Identities=20% Similarity=0.292 Sum_probs=248.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhhcccccCCChhhhhhHh
Q 019698 8 MFREQVLTYAYILLYIALSSGQIFFNKWVLSSKEINFPFPLGLTLLHMVFSSVLCFLLTKVFKVMKVEDGMTLEIYTTSV 87 (337)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~p~~~~~~r~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (337)
..++....+...+.++.++..+.+.||+.++ +++||..+.+...|++.+.+.+.. .+..|..+ .++.+++.. |++
T Consensus 6 ~~~~~~~~l~sa~~Y~~sS~lm~vvNK~vls--~y~f~~~l~l~~~Q~l~s~~~v~~-lk~~~lv~-~~~l~~~~~-kk~ 80 (314)
T KOG1444|consen 6 GSKKQSSPLLSALFYCLSSILMTVVNKIVLS--SYNFPMGLLLMLLQSLASVLVVLV-LKRLGLVN-FRPLDLRTA-KKW 80 (314)
T ss_pred cchhhhhhhHHHHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHHHHHHH-HHHhceee-cCCcChHHH-HHH
Confidence 4555666678888899999999999999999 555554455556999988776544 44455444 345667775 699
Q ss_pred HHHHHHHHHHHHhhhhhhhcccHhHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHhhhheeeeecCccchHHHHH
Q 019698 88 IPIGAMFAMTLWLGNTAYLYISVAFAQMLKAIMPVAVFILGVAAGLEVMSCRMLLIMSVISFGVVVASYGEININWIGVV 167 (337)
Q Consensus 88 ~~~~~~~~~~~~~~~~al~~~~~~~~~ii~~~~Pv~~~l~~~~~~~er~~~~~~~~i~l~~~G~~l~~~~~~~~~~~G~i 167 (337)
+|..++|.++......+++|+++++++++++.+|+.+++....++|.|+++..|.++....+|.......|.++|..|+.
T Consensus 81 ~P~~~lf~~~i~t~~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~~~d~sf~~~gY~ 160 (314)
T KOG1444|consen 81 FPVSLLFVGMLFTGSKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAAAFTDLSFNLRGYS 160 (314)
T ss_pred ccHHHHHHHHHHHccccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhhccccceecchhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCCChHHHHHHHhHHHHHHHHHHHHhh-cccccc-cccccCc--cchHHHHHHHHH
Q 019698 168 YQMGGVVGEALRLIFMEILVKRKGLKLNPISVMYYVSPCSALCLFIPWIFL-EKPKMD-ALETWHF--PPLMLTLNCLCT 243 (337)
Q Consensus 168 ~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~-~~~~~~-~~~~~~~--~~~~~~~~~i~~ 243 (337)
|++.+.++-+.+.++.||-.+.. +.+.+++++|.++.+.+.+.....+. |.+... ....|.. .+..+..+|+++
T Consensus 161 w~~~n~~~~a~~~v~~kk~vd~~--~l~~~~lv~yNnl~~L~~l~~~~~~~ge~~~l~~~~~~~~~~~~~~~~~lScv~g 238 (314)
T KOG1444|consen 161 WALANCLTTAAFVVYVKKSVDSA--NLNKFGLVFYNNLLSLPPLLILSFITGELDALSLNFDNWSDSSVLVVMLLSCVMG 238 (314)
T ss_pred HHHHHHHHHHHHHHHHHHhhccc--cccceeEEeehhHHHHHHHHHHHHHhcchHHHHhhcccccchhHHHHHHHHHHHH
Confidence 99999999999999999988744 67999999999998887776555444 333111 1112322 135688899999
Q ss_pred HHHHHHHHHHHhhcchhHHHHHhhhhhHHHhhhhHhccCCcccchhhHHHHHHHHHHHHHhhhcccchhhhh
Q 019698 244 FALNLSVFLVISHTSALTIRVAGVVKDWVVVLFSALLFADTKLTIINLFGYGIAIAGVAAYNNHKLKKEASR 315 (337)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~t~~~~~G~~li~~gv~l~~~~~~~~~~~~ 315 (337)
++.+++.+++.+.+|+++.++++......+.+...+++|++ .++...+|..+-+.|..+|++.+.++++++
T Consensus 239 f~isy~s~~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~-~~~~n~~gll~~~~ggv~Y~~~~~~~k~~~ 309 (314)
T KOG1444|consen 239 FGISYTSFLCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKP-FTFLNVIGLLVGFFGGVLYSYATFRKKKQP 309 (314)
T ss_pred HHHHHHHHHHHhhccccceeehhhhhhHHHHHHHHhcCCce-echhhhHHHHHHhhhhhHHhhhhhhhccCC
Confidence 99999999999999999999999777777777777777788 999999999999999999999876655443
No 12
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=99.96 E-value=5.6e-26 Score=202.76 Aligned_cols=270 Identities=14% Similarity=0.109 Sum_probs=194.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhhcccccCCChhhhhhHhHHH
Q 019698 11 EQVLTYAYILLYIALSSGQIFFNKWVLSSKEINFPFPLGLTLLHMVFSSVLCFLLTKVFKVMKVEDGMTLEIYTTSVIPI 90 (337)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~p~~~~~~r~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (337)
........++.|... ....|...+ +++ |..+.++|++++.+++.++.+..++ +.+++++ +..+..
T Consensus 13 ~~~~~~la~~~~~~~----~~~~K~~~~----~~~-~~~~~~~R~~~a~l~l~~~~~~~~~-----~~~~~~~-~~~~~~ 77 (293)
T PRK10532 13 PILLLLIAMASIQSG----ASLAKSLFP----LVG-APGVTALRLALGTLILIAIFKPWRL-----RFAKEQR-LPLLFY 77 (293)
T ss_pred HHHHHHHHHHHHHhh----HHHHHHHHH----HcC-HHHHHHHHHHHHHHHHHHHHhHHhc-----cCCHHHH-HHHHHH
Confidence 334444444444433 346899998 788 9999999999999888766432111 2234444 456667
Q ss_pred HHHHHHHHHhhhhhhhcccHhHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHhhhheeeeec---CccchHHHHH
Q 019698 91 GAMFAMTLWLGNTAYLYISVAFAQMLKAIMPVAVFILGVAAGLEVMSCRMLLIMSVISFGVVVASYG---EININWIGVV 167 (337)
Q Consensus 91 ~~~~~~~~~~~~~al~~~~~~~~~ii~~~~Pv~~~l~~~~~~~er~~~~~~~~i~l~~~G~~l~~~~---~~~~~~~G~i 167 (337)
|++.+..+.+.+++++++|++.+.++..+.|+++.+++ +||+.+. .++.++++|+.++... ..+.+..|++
T Consensus 78 g~~~~~~~~~~~~al~~~~~~~a~~l~~t~Pi~~~ll~----~~~~~~~--~~~~i~~~Gv~li~~~~~~~~~~~~~G~l 151 (293)
T PRK10532 78 GVSLGGMNYLFYLSIQTVPLGIAVALEFTGPLAVALFS----SRRPVDF--VWVVLAVLGLWFLLPLGQDVSHVDLTGAA 151 (293)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHh----cCChHHH--HHHHHHHHHHheeeecCCCcccCChHHHH
Confidence 77788888889999999999999999999999999887 3666544 4556778998876532 2234678999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCCChHHHHHHHhHHHHHHHHHHHHhhcccccccccccCccchHHHHHHHHHHHHH
Q 019698 168 YQMGGVVGEALRLIFMEILVKRKGLKLNPISVMYYVSPCSALCLFIPWIFLEKPKMDALETWHFPPLMLTLNCLCTFALN 247 (337)
Q Consensus 168 ~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 247 (337)
++++++++||.|.+..||..++ .++.... +....+++.+.+.....+.... .++......+..+.+.+.+.+
T Consensus 152 l~l~aa~~~a~~~v~~r~~~~~----~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~---~~~~~~~~~l~lgv~~t~~~~ 223 (293)
T PRK10532 152 LALGAGACWAIYILSGQRAGAE----HGPATVA-IGSLIAALIFVPIGALQAGEAL---WHWSILPLGLAVAILSTALPY 223 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc----CCchHHH-HHHHHHHHHHHHHHHHccCccc---CCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999763 3555554 4555666666555444332111 111111122333334444555
Q ss_pred HHHHHHHhhcchhHHHHHhhhhhHHHhhhhHhccCCcccchhhHHHHHHHHHHHHHhhhcccc
Q 019698 248 LSVFLVISHTSALTIRVAGVVKDWVVVLFSALLFADTKLTIINLFGYGIAIAGVAAYNNHKLK 310 (337)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~t~~~~~G~~li~~gv~l~~~~~~~ 310 (337)
..+++++++.+|.+++.+.+++|+++.+++++++||+ +++.+++|.++++.|++.+....++
T Consensus 224 ~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~-~~~~~~iG~~lIl~~~~~~~~~~~~ 285 (293)
T PRK10532 224 SLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGET-LTLIQWLALGAIIAASMGSTLTIRR 285 (293)
T ss_pred HHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCC-CcHHHHHHHHHHHHHHHHHHhcCCC
Confidence 5678999999999999999999999999999999999 9999999999999999998765433
No 13
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=99.95 E-value=5.4e-26 Score=203.71 Aligned_cols=276 Identities=24% Similarity=0.349 Sum_probs=221.0
Q ss_pred HHHHHHHHHhhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhhcccccCCChhhhhhHhHHHHHHHHHHHHhhhhhhh
Q 019698 27 SGQIFFNKWVLSSKEINFPFPLGLTLLHMVFSSVLCFLLTKVFKVMKVEDGMTLEIYTTSVIPIGAMFAMTLWLGNTAYL 106 (337)
Q Consensus 27 ~~~~~~~k~~~~~~~~~~~~p~~~~~~r~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~ 106 (337)
....+.++.+...+. +.++|..+++.|++.+.+...+.....+ .+.+ .+..+++..+.+.++.+...+.|.+++
T Consensus 13 ~~~g~~qE~i~~~~~-~~~~~~~lt~~q~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~al~ 86 (303)
T PF08449_consen 13 CSYGILQEKIMTTPY-GSPFPLFLTFVQFAFNALFSFILLSLFK-FPKS----RKIPLKKYAILSFLFFLASVLSNAALK 86 (303)
T ss_pred HHHHHHHHHHHcCCC-CCcccHHHHHHHHHHHHHHHHHHHHhcc-ccCC----CcChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334556667666322 2257999999999998888777655444 1111 222345778889999999999999999
Q ss_pred cccHhHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHhhhheeeeecCcc----c------hHHHHHHHHHHHHHH
Q 019698 107 YISVAFAQMLKAIMPVAVFILGVAAGLEVMSCRMLLIMSVISFGVVVASYGEIN----I------NWIGVVYQMGGVVGE 176 (337)
Q Consensus 107 ~~~~~~~~ii~~~~Pv~~~l~~~~~~~er~~~~~~~~i~l~~~G~~l~~~~~~~----~------~~~G~i~~l~s~~~~ 176 (337)
|+|.+..++++++.|+++++++++++|+|++++++.++++..+|+++....+.+ . +..|+++.+++.++.
T Consensus 87 ~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~~~~~~~~~~~~G~~ll~~sl~~~ 166 (303)
T PF08449_consen 87 YISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSSSSNSSSFSSALGIILLLLSLLLD 166 (303)
T ss_pred hCChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeecccccccccccccccchhHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999988764321 1 124999999999999
Q ss_pred HHHHHHHHHHhhhcCCCCChHHHHHHHhHHHHHHHHHHHHhh---ccccccccc-ccCccchHHHHHHHHHHHHHHHHHH
Q 019698 177 ALRLIFMEILVKRKGLKLNPISVMYYVSPCSALCLFIPWIFL---EKPKMDALE-TWHFPPLMLTLNCLCTFALNLSVFL 252 (337)
Q Consensus 177 a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~ 252 (337)
|.+.+++||..+++ +.++.+.++|.+.++.+...+..... |........ .....+..++..++.++..+...+.
T Consensus 167 a~~~~~qe~~~~~~--~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s~~~~~g~~~i~~ 244 (303)
T PF08449_consen 167 AFTGVYQEKLFKKY--GKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLFSLTGALGQFFIFY 244 (303)
T ss_pred HHHHHHHHHHHHHh--CCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999977 56889999999999998887766552 211111110 1111234566677888888888888
Q ss_pred HHhhcchhHHHHHhhhhhHHHhhhhHhccCCcccchhhHHHHHHHHHHHHHhhhcccch
Q 019698 253 VISHTSALTIRVAGVVKDWVVVLFSALLFADTKLTIINLFGYGIAIAGVAAYNNHKLKK 311 (337)
Q Consensus 253 ~~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~t~~~~~G~~li~~gv~l~~~~~~~~ 311 (337)
.+++.+|++.++...++.++++++|+++||++ +++.+|+|.++++.|..+|.+.++|+
T Consensus 245 ~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~-~~~~~~~G~~lv~~g~~~~~~~~~k~ 302 (303)
T PF08449_consen 245 LIKKFSALTTTIVTTLRKFLSILLSVIIFGHP-LSPLQWIGIVLVFAGIFLYSYAKKKK 302 (303)
T ss_pred HHHhcCchhhhhHHHHHHHHHHHHHHHhcCCc-CChHHHHHHHHhHHHHHHHHHhhccC
Confidence 99999999999999999999999999999999 99999999999999999998876654
No 14
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.95 E-value=7.6e-26 Score=198.89 Aligned_cols=254 Identities=19% Similarity=0.132 Sum_probs=194.4
Q ss_pred HHHHHHhhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhhcccccCCChhhhhhHhHHHHHHHHHHHHhhhhhhhccc
Q 019698 30 IFFNKWVLSSKEINFPFPLGLTLLHMVFSSVLCFLLTKVFKVMKVEDGMTLEIYTTSVIPIGAMFAMTLWLGNTAYLYIS 109 (337)
Q Consensus 30 ~~~~k~~~~~~~~~~~~p~~~~~~r~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~ 109 (337)
....|..++ .+.| |..+.+.|.+++.+++.+..+. + .+++++.+.....++.......+.+.|++++|
T Consensus 5 ~~~~k~~~~---~~~~-~~~~~~~r~~~~~l~l~~~~~~-~-------~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~ 72 (260)
T TIGR00950 5 GVVIGQYLE---GQVP-LYFAVFRRLIFALLLLLPLLRR-R-------PPLKRLLRLLLLGALQIGVFYVLYFVAVKRLP 72 (260)
T ss_pred HHHHHHHHh---cCCC-HHHHHHHHHHHHHHHHHHHHHh-c-------cCHhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 346788877 1445 9999999999888877665432 2 12444443444445557889999999999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHhhhheeeeecC-ccchHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019698 110 VAFAQMLKAIMPVAVFILGVAAGLEVMSCRMLLIMSVISFGVVVASYGE-ININWIGVVYQMGGVVGEALRLIFMEILVK 188 (337)
Q Consensus 110 ~~~~~ii~~~~Pv~~~l~~~~~~~er~~~~~~~~i~l~~~G~~l~~~~~-~~~~~~G~i~~l~s~~~~a~~~v~~~~~~~ 188 (337)
++.++++.++.|+++.+++.+++|||++++++.+++++++|+.+....+ .+.+..|++++++++++++.+.++.|+..+
T Consensus 73 ~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~~~~~~~~~~G~~~~l~a~~~~a~~~~~~k~~~~ 152 (260)
T TIGR00950 73 VGEAALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLSDGNLSINPAGLLLGLGSGISFALGTVLYKRLVK 152 (260)
T ss_pred hhhhHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhccCCcccccHHHHHHHHHHHHHHHHHHHHHhHHhh
Confidence 9999999999999999999999999999999999999999988876533 345678999999999999999999999987
Q ss_pred hcCCCCChHHHHHHHhHHHHHHHHHHHHhhcccccccccccCccchHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhh
Q 019698 189 RKGLKLNPISVMYYVSPCSALCLFIPWIFLEKPKMDALETWHFPPLMLTLNCLCTFALNLSVFLVISHTSALTIRVAGVV 268 (337)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (337)
+. +.++.....+....+.+.+.+.....+..... +......++..+.+.+...+..+++++++.++.+.+...++
T Consensus 153 ~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~s~~~~~ 227 (260)
T TIGR00950 153 KE--GPELLQFTGWVLLLGALLLLPFAWFLGPNPQA---LSLQWGALLYLGLIGTALAYFLWNKGLTLVDPSAASILALA 227 (260)
T ss_pred cC--CchHHHHHHHHHHHHHHHHHHHHHhcCCCCCc---chHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 43 22344555456667777666655443322211 11111123334334445566668899999999999999999
Q ss_pred hhHHHhhhhHhccCCcccchhhHHHHHHHHHHH
Q 019698 269 KDWVVVLFSALLFADTKLTIINLFGYGIAIAGV 301 (337)
Q Consensus 269 ~pv~~~i~~~~~~~e~~~t~~~~~G~~li~~gv 301 (337)
+|+++.+++++++||+ +++.+++|.++++.|+
T Consensus 228 ~pv~~~ll~~~~~~E~-~~~~~~~G~~li~~g~ 259 (260)
T TIGR00950 228 EPLVALLLGLLILGET-LSLPQLIGGALIIAAV 259 (260)
T ss_pred HHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHhc
Confidence 9999999999999999 9999999999999986
No 15
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=1.4e-26 Score=192.40 Aligned_cols=305 Identities=19% Similarity=0.205 Sum_probs=253.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhhcccc-----cCCCh
Q 019698 6 RRMFREQVLTYAYILLYIALSSGQIFFNKWVLSSKEINFPFPLGLTLLHMVFSSVLCFLLTKVFKVMKVE-----DGMTL 80 (337)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~p~~~~~~r~~~a~~~l~~~~~~~~~~~~~-----~~~~~ 80 (337)
+...++....-.....++++++++.+.||++++......+.|.++++.|+++...+++.+.+..++.+.. -+.+.
T Consensus 20 ~~l~~n~~~v~~~vs~ywv~SI~~vf~nk~llss~~~~Ld~plf~t~~qcLvt~~~c~~ls~ls~k~~~~ftfp~~~ldl 99 (347)
T KOG1442|consen 20 PVLEANAKQVDSAVSLYWVTSIGLVFLNKHLLSSLVVILDAPLFITWYQCLVTTSICLVLSSLSVKYPGLFTFPSLQLDL 99 (347)
T ss_pred HHHHHhhhchhhhccceeeeeehhhhhHHHHhhchhhhcCcHHHHHHHHHHHHHHHHHHHHHHHhhccceeccCcccccH
Confidence 3344556667777888999999999999999996556788999999999999999999887766554321 12223
Q ss_pred hhhhhHhHHHHHHHHHHHHhhhhhhhcccHhHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHhhhheeeeecC--
Q 019698 81 EIYTTSVIPIGAMFAMTLWLGNTAYLYISVAFAQMLKAIMPVAVFILGVAAGLEVMSCRMLLIMSVISFGVVVASYGE-- 158 (337)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~ii~~~~Pv~~~l~~~~~~~er~~~~~~~~i~l~~~G~~l~~~~~-- 158 (337)
+. .|..++.++.+.++..+.|.+++|++++.+.+-+++..+|+.+++++++|+|-+.....+..++++|.-+-+..+
T Consensus 100 ~t-~r~vlplsvVfi~mI~fnnlcL~yVgVaFYyvgRsLttvFtVlLtyvllkqkTs~~~~~~C~lIi~GF~lGvdqE~~ 178 (347)
T KOG1442|consen 100 AT-ARQVLPLSVVFILMISFNNLCLKYVGVAFYYVGRSLTTVFTVLLTYVLLKQKTSFFALGCCLLIILGFGLGVDQEGS 178 (347)
T ss_pred HH-HHhhcchhheeeeehhccceehhhcceEEEEeccchhhhHHHHhHHhhcccccccccceeehhheehheeccccccc
Confidence 33 468899999999999999999999999999999999999999999999999999999999999999998888766
Q ss_pred -ccchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChHHHHHHHhHHHHHHHHHHHHhhc-ccccccccc-c-Cccch
Q 019698 159 -ININWIGVVYQMGGVVGEALRLIFMEILVKRKGLKLNPISVMYYVSPCSALCLFIPWIFLE-KPKMDALET-W-HFPPL 234 (337)
Q Consensus 159 -~~~~~~G~i~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~-~~~~~~~~~-~-~~~~~ 234 (337)
.+.++.|.++++.|+++-|+..++.||..... .-.-+...+|+++.+.++.+|...+.+ ......... + ...|.
T Consensus 179 ~~~ls~~GvifGVlaSl~vAlnaiytkk~l~~v--~~~iw~lt~ynnv~a~lLflpll~lnge~~~v~~~~~l~a~~Fw~ 256 (347)
T KOG1442|consen 179 TGTLSWIGVIFGVLASLAVALNAIYTKKVLPPV--GDCIWRLTAYNNVNALLLFLPLLILNGEFQAVVGFPHLPAIKFWI 256 (347)
T ss_pred cCccchhhhHHHHHHHHHHHHHHHhhheecccc--cCeehhhHHHHHHHHHHHHHHHHHHcchHHHHcCcccchHHHHHH
Confidence 45689999999999999999999999876633 235688889999888888777665532 222222111 1 22346
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhhhhHHHhhhhHhccCCcccchhhHHHHHHHHHHHHHhhhcccchhhh
Q 019698 235 MLTLNCLCTFALNLSVFLVISHTSALTIRVAGVVKDWVVVLFSALLFADTKLTIINLFGYGIAIAGVAAYNNHKLKKEAS 314 (337)
Q Consensus 235 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~t~~~~~G~~li~~gv~l~~~~~~~~~~~ 314 (337)
++..+|++++.+++...+-+|.+||.+.++....+....+++++.+.+|. .+...|-|-.+++.|...|.+.|..+.++
T Consensus 257 ~mtLsglfgF~mgyvTg~QIK~TSplThnISgTAka~aQTvlAv~~y~E~-ks~lwwtsn~~vLvgs~~YT~vk~~em~~ 335 (347)
T KOG1442|consen 257 LMTLSGLFGFAMGYVTGWQIKVTSPLTHNISGTAKAAAQTVLAVAYYSET-KSGLWWTSNIVVLVGSLAYTLVKEHEMRK 335 (347)
T ss_pred HHHHHHHHHHHhhheeeEEEEecccceeeecHhHHHHHHHHHHHHHHHHH-hhhheeeeeEEEEehhHHHHHHHHHHHHh
Confidence 78899999999999999999999999999999999999999999999999 99999999999999999999876655443
No 16
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.91 E-value=2.5e-22 Score=178.28 Aligned_cols=268 Identities=12% Similarity=0.035 Sum_probs=182.7
Q ss_pred HHHHHHHHHHHhhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhhcccccCCChhhhhhHhHHHHHHHHHHHHhhhhh
Q 019698 25 LSSGQIFFNKWVLSSKEINFPFPLGLTLLHMVFSSVLCFLLTKVFKVMKVEDGMTLEIYTTSVIPIGAMFAMTLWLGNTA 104 (337)
Q Consensus 25 ~~~~~~~~~k~~~~~~~~~~~~p~~~~~~r~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 104 (337)
+.+....++|...+ +-+ + ..+++.....+++.++...+...+ ..+..++++++.....+........+.+.+
T Consensus 12 ~~a~~~~~~k~~~~----~~~-~--~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 83 (281)
T TIGR03340 12 MHAGWNLMAKSHAD----KEP-D--FLWWALLAHSVLLTPYGLWYLAQV-GWSRLPATFWLLLAISAVANMVYFLGLAQA 83 (281)
T ss_pred HHHHHHHHHhhcCC----chh-H--HHHHHHHHHHHHHHHHHHHhcccC-CCCCcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 33344566776655 322 3 346777666666666654321111 111112333445555666688888999999
Q ss_pred hhcccHhHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHhhhheeeeecC-ccchHHHHHHHHHHHHHHHHHHHHH
Q 019698 105 YLYISVAFAQMLKAIMPVAVFILGVAAGLEVMSCRMLLIMSVISFGVVVASYGE-ININWIGVVYQMGGVVGEALRLIFM 183 (337)
Q Consensus 105 l~~~~~~~~~ii~~~~Pv~~~l~~~~~~~er~~~~~~~~i~l~~~G~~l~~~~~-~~~~~~G~i~~l~s~~~~a~~~v~~ 183 (337)
+++.|++.++.+.++.|+++.+++++++|||++++++.|+.+++.|+.+....+ .+.+..|+.++++++++|+.|.++.
T Consensus 84 ~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~~~~~~~~~g~~~~l~aal~~a~~~i~~ 163 (281)
T TIGR03340 84 YHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLSRFAQHRRKAYAWALAAALGTAIYSLSD 163 (281)
T ss_pred HhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhhhhc
Confidence 999999999999999999999999999999999999999999999998765433 2345678889999999999999998
Q ss_pred HHHhhhcCCCCChHHHHHHHhHHHHHHHHHHHHhhcccccccccccCccchHHHHHHHHHHHHHHHHHHHHhhcchhHHH
Q 019698 184 EILVKRKGLKLNPISVMYYVSPCSALCLFIPWIFLEKPKMDALETWHFPPLMLTLNCLCTFALNLSVFLVISHTSALTIR 263 (337)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 263 (337)
|+..++.+...+......+.....++...+.....+..... ... ...+..+..+++.+...+..+++++++.++.+.+
T Consensus 164 k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~s~l~~~l~~~al~~~~a~~~~ 241 (281)
T TIGR03340 164 KAAALGVPAFYSALGYLGIGFLAMGWPFLLLYLKRHGRSMF-PYA-RQILPSATLGGLMIGGAYALVLWAMTRLPVATVV 241 (281)
T ss_pred cccccchhcccccHHHHHHHHHHHHHHHHHHHHHHhccchh-hhH-HHHHHHHHHHHHHHHHHHHHHHHHHhhCCceEEE
Confidence 87644221111112222222222211111111111211110 111 1112345555566666677788999999999999
Q ss_pred HHhhhhhHHHhhhhHhccCCcccchhhHHHHHHHHHHHHH
Q 019698 264 VAGVVKDWVVVLFSALLFADTKLTIINLFGYGIAIAGVAA 303 (337)
Q Consensus 264 ~~~~~~pv~~~i~~~~~~~e~~~t~~~~~G~~li~~gv~l 303 (337)
...+++|+++++++++++||+ +|..+++|.++++.|+.+
T Consensus 242 ~~~~l~pv~a~l~g~~~lgE~-~~~~~~iG~~lil~Gv~l 280 (281)
T TIGR03340 242 ALRNTSIVFAVVLGIWFLNER-WYLTRLMGVCIIVAGLVV 280 (281)
T ss_pred eecccHHHHHHHHHHHHhCCC-ccHHHHHHHHHHHHhHHh
Confidence 999999999999999999999 999999999999999875
No 17
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=99.90 E-value=1.6e-21 Score=170.99 Aligned_cols=247 Identities=13% Similarity=0.070 Sum_probs=166.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhhcc----cccCCChhhhhhHhH
Q 019698 13 VLTYAYILLYIALSSGQIFFNKWVLSSKEINFPFPLGLTLLHMVFSSVLCFLLTKVFKVMK----VEDGMTLEIYTTSVI 88 (337)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~p~~~~~~r~~~a~~~l~~~~~~~~~~~----~~~~~~~~~~~~~~~ 88 (337)
...+...++|+.. ....|. .+ +.+ |.+++++|++++.+++.++...+++.+ +.++.++++.+....
T Consensus 5 ~~~i~a~~~wg~~----~~~~k~-~~----~~~-~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (256)
T TIGR00688 5 IVSLLASFLFGYM----YYYSKL-LK----PLP-ATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLL 74 (256)
T ss_pred HHHHHHHHHHHHH----HHHHHH-hc----cCC-HHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHH
Confidence 4445555566655 446787 45 577 999999999999888766654333211 011111222222455
Q ss_pred HHHHHHHHHHHhhhhhhhcccHhHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHhhhheeeeecCccchHHHHHH
Q 019698 89 PIGAMFAMTLWLGNTAYLYISVAFAQMLKAIMPVAVFILGVAAGLEVMSCRMLLIMSVISFGVVVASYGEININWIGVVY 168 (337)
Q Consensus 89 ~~~~~~~~~~~~~~~al~~~~~~~~~ii~~~~Pv~~~l~~~~~~~er~~~~~~~~i~l~~~G~~l~~~~~~~~~~~G~i~ 168 (337)
..+.+.+.+..+++++++++|+++++++.++.|+++++++++++|||+++++++++++++.|+.+...++.+.+ .+
T Consensus 75 ~~g~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~~~~~~~----~~ 150 (256)
T TIGR00688 75 LCGLLIGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIVLKGSLP----WE 150 (256)
T ss_pred HHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHcCCch----HH
Confidence 66777888999999999999999999999999999999999999999999999999999999987654322222 45
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCCChHHHHHHHhHHHHHHHHHHHHhhcccccccccccCccchHHHHHHHHHHHHHH
Q 019698 169 QMGGVVGEALRLIFMEILVKRKGLKLNPISVMYYVSPCSALCLFIPWIFLEKPKMDALETWHFPPLMLTLNCLCTFALNL 248 (337)
Q Consensus 169 ~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 248 (337)
+++++++||.|.+..|+..+ + +..+.... .....+...+.....+.... ........+..++..++.+...+.
T Consensus 151 ~l~aa~~~a~~~i~~~~~~~-~----~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~g~~t~i~~~ 223 (256)
T TIGR00688 151 ALVLAFSFTAYGLIRKALKN-T----DLAGFCLE-TLSLMPVAIYYLLQTDFATV-QQTNPFPIWLLLVLAGLITGTPLL 223 (256)
T ss_pred HHHHHHHHHHHHHHHhhcCC-C----CcchHHHH-HHHHHHHHHHHHHHhccCcc-cccCchhHHHHHHHHHHHHHHHHH
Confidence 78899999999999998754 1 22222221 11111121111111111111 111111122334444556777778
Q ss_pred HHHHHHhhcchhHHHHHhhhhhHHHhhhhHhc
Q 019698 249 SVFLVISHTSALTIRVAGVVKDWVVVLFSALL 280 (337)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~pv~~~i~~~~~ 280 (337)
.+++++|+.++.+.+...+++|+++++++.++
T Consensus 224 l~~~a~~~~~a~~~s~~~yl~Pv~~~~~~~~~ 255 (256)
T TIGR00688 224 AFVIAANRLPLNLLGLLQYIGPTIMMLCVSFL 255 (256)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence 88999999999999999999999999998764
No 18
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=99.88 E-value=1.4e-19 Score=161.38 Aligned_cols=276 Identities=16% Similarity=0.124 Sum_probs=192.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhhcccccCCChhhhhhHhHH
Q 019698 10 REQVLTYAYILLYIALSSGQIFFNKWVLSSKEINFPFPLGLTLLHMVFSSVLCFLLTKVFKVMKVEDGMTLEIYTTSVIP 89 (337)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~p~~~~~~r~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (337)
......+.....|+... ...|...+ +...+....+.|.+.+..+..+... ++.. ..+...++.++..+.
T Consensus 7 ~~~~~~l~~~~~~~~~~----~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~ 75 (292)
T COG0697 7 LGLLALLLWGLLWGLSF----IALKLAVE----SLDPFLFAAALRFLIAALLLLPLLL--LEPR-GLRPALRPWLLLLLL 75 (292)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHhc----ccCChHHHHHHHHHHHHHHHHHHHH--hhcc-cccccccchHHHHHH
Confidence 33344444444555443 34566655 3232666667799988777333322 2111 011112212335566
Q ss_pred HHHHHHHHHHhhhhhhhcccHhHHHHHHHHHHHHHHHHHH-HhcccccchhhHHHHHHHhhhheeeeecCccc---hHHH
Q 019698 90 IGAMFAMTLWLGNTAYLYISVAFAQMLKAIMPVAVFILGV-AAGLEVMSCRMLLIMSVISFGVVVASYGEINI---NWIG 165 (337)
Q Consensus 90 ~~~~~~~~~~~~~~al~~~~~~~~~ii~~~~Pv~~~l~~~-~~~~er~~~~~~~~i~l~~~G~~l~~~~~~~~---~~~G 165 (337)
.++.......+.+.++++++++.++.+.++.|+++.++++ +++|||++++++.++.+++.|+.+....+... +..|
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~~~~~~~~g 155 (292)
T COG0697 76 ALLGLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGGGGILSLLG 155 (292)
T ss_pred HHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCcchhHHHHH
Confidence 6666888999999999999999999999999999999997 77799999999999999999999998865543 2589
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCCCChHHHHH-HHhHHHHHHHHHHHHhhcccccccccccCccchHHHHHHHHHH
Q 019698 166 VVYQMGGVVGEALRLIFMEILVKRKGLKLNPISVMY-YVSPCSALCLFIPWIFLEKPKMDALETWHFPPLMLTLNCLCTF 244 (337)
Q Consensus 166 ~i~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 244 (337)
+.+++.+++++|.+.++.|+.. + .++..... +... .......+....+.+.. ..+ ..+..+...++...
T Consensus 156 ~~~~l~a~~~~a~~~~~~~~~~-~----~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~g~~~~ 225 (292)
T COG0697 156 LLLALAAALLWALYTALVKRLS-R----LGPVTLALLLQLL-LALLLLLLFFLSGFGAP---ILS-RAWLLLLYLGVFST 225 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc-C----CChHHHHHHHHHH-HHHHHHHHHHhcccccc---CCH-HHHHHHHHHHHHHH
Confidence 9999999999999999999987 2 24555554 3333 12222112222222111 111 11233344444444
Q ss_pred -HHHHHHHHHHhhcchhHHHHHhhhhhHHHhhhhHhccCCcccchhhHHHHHHHHHHHHHhhhc
Q 019698 245 -ALNLSVFLVISHTSALTIRVAGVVKDWVVVLFSALLFADTKLTIINLFGYGIAIAGVAAYNNH 307 (337)
Q Consensus 245 -~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~t~~~~~G~~li~~gv~l~~~~ 307 (337)
..+..+++..++.++...+...+++|+.+.+++++++||+ ++..+++|..+++.|+.+....
T Consensus 226 ~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~-~~~~~~~G~~li~~g~~l~~~~ 288 (292)
T COG0697 226 GLAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEP-LSPAQLLGAALVVLGVLLASLR 288 (292)
T ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHHHHHHHHhcc
Confidence 4667788999999999999999999999999999999999 9999999999999999987665
No 19
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=99.88 E-value=1.9e-21 Score=157.36 Aligned_cols=287 Identities=17% Similarity=0.261 Sum_probs=234.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhhcccccCCChhhhhhHhHHHHHHHHH
Q 019698 17 AYILLYIALSSGQIFFNKWVLSSKEINFPFPLGLTLLHMVFSSVLCFLLTKVFKVMKVEDGMTLEIYTTSVIPIGAMFAM 96 (337)
Q Consensus 17 ~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~p~~~~~~r~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (337)
...+-+...++.+++.||+.++ +.+|+--+.+.+.|.+++..-+.++ ++.|..+.+ +++. +.+.|.+++...
T Consensus 9 ~~~lsYc~sSIlmTltNKyVls--~~gfnMnflll~vQSlvcvv~l~iL-k~l~~~~fR----~t~a-K~WfpiSfLLv~ 80 (309)
T COG5070 9 TASLSYCFSSILMTLTNKYVLS--NLGFNMNFLLLAVQSLVCVVGLLIL-KFLRLVEFR----LTKA-KKWFPISFLLVV 80 (309)
T ss_pred hHHHHHHHHHHHHHHhhHheec--CCCCchhhHHHHHHHHHHHHHHHHH-HHHhHhhee----hhhh-hhhcCHHHHHHH
Confidence 3455566788889999999999 6677766788899999887765444 434433222 4443 467788999899
Q ss_pred HHHhhhhhhhcccHhHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHhhhheeeeecCcc--------chHHHHHH
Q 019698 97 TLWLGNTAYLYISVAFAQMLKAIMPVAVFILGVAAGLEVMSCRMLLIMSVISFGVVVASYGEIN--------INWIGVVY 168 (337)
Q Consensus 97 ~~~~~~~al~~~~~~~~~ii~~~~Pv~~~l~~~~~~~er~~~~~~~~i~l~~~G~~l~~~~~~~--------~~~~G~i~ 168 (337)
+......++||.+++.+++.++++.+.++.....++|.|++..+..+.++.++..+...++|.+ .| -|++|
T Consensus 81 MIyt~SKsLqyL~vpiYTiFKNltII~iAygEvl~Fgg~vtsl~l~SFilMvlSS~va~w~D~q~~~~~~~~lN-~GY~W 159 (309)
T COG5070 81 MIYTSSKSLQYLAVPIYTIFKNLTIILIAYGEVLFFGGRVTSLELLSFILMVLSSVVATWGDQQASAFKAQILN-PGYLW 159 (309)
T ss_pred HHHhcccceeeeeeeHHHHhccceeehhHhhHHHHhcCccchhhHHHHHHHHHHHHHhccchhhHHHHHhcccC-CceEE
Confidence 9999999999999999999999999999999999999999999999999999998888887652 33 49999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCCChHHHHHHHhHHHHHHHHHHHHhhccccccc-ccccCcc-chHHHHHHHHHHHH
Q 019698 169 QMGGVVGEALRLIFMEILVKRKGLKLNPISVMYYVSPCSALCLFIPWIFLEKPKMDA-LETWHFP-PLMLTLNCLCTFAL 246 (337)
Q Consensus 169 ~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~i~~~~~ 246 (337)
+..+++.-|.+....||-.|-. +....+.++|.++.+...++.....+|.....+ .++.... ...++.+|+++++.
T Consensus 160 m~~NclssaafVL~mrkri~lt--Nf~d~dtmfYnNllslPiL~~~s~~~edws~~n~annl~~d~l~am~ISgl~svgi 237 (309)
T COG5070 160 MFTNCLSSAAFVLIMRKRIKLT--NFKDFDTMFYNNLLSLPILLSFSFLFEDWSPGNLANNLSVDSLMAMFISGLCSVGI 237 (309)
T ss_pred EehhhHhHHHHHHHHHHhhccc--ccchhhHHHHhhhHHHHHHHHHHHHhccCCcchhhcCCChHHHHHHHHHHHHHhhh
Confidence 9999999999999999876643 567899999999999988877777766543321 2222222 24567789999999
Q ss_pred HHHHHHHHhhcchhHHHHHhhhhhHHHhhhhHhccCCcccchhhHHHHHHHHHHHHHhhhcccchhhhh
Q 019698 247 NLSVFLVISHTSALTIRVAGVVKDWVVVLFSALLFADTKLTIINLFGYGIAIAGVAAYNNHKLKKEASR 315 (337)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~t~~~~~G~~li~~gv~l~~~~~~~~~~~~ 315 (337)
.++..|+++.+++++.++++.++.....+-|.++|||+ .+...+..+.+=..+..+|...+.++++++
T Consensus 238 Sy~saWcvrVtSSTtySMvGALNKlp~alaGlvffdap-~nf~si~sillGflsg~iYavaks~k~q~q 305 (309)
T COG5070 238 SYCSAWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAP-VNFLSIFSILLGFLSGAIYAVAKSKKQQNQ 305 (309)
T ss_pred hhccceeEeehhhhHHHHHHHhhhChHHHhhhhhcCCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999 999999999999998899988765544433
No 20
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=99.86 E-value=1.1e-19 Score=158.09 Aligned_cols=228 Identities=15% Similarity=0.145 Sum_probs=187.6
Q ss_pred hhHhHHHHHHHHHHHHhhhhhhhcccHhHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHhhhheeeeecCc----
Q 019698 84 TTSVIPIGAMFAMTLWLGNTAYLYISVAFAQMLKAIMPVAVFILGVAAGLEVMSCRMLLIMSVISFGVVVASYGEI---- 159 (337)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~ii~~~~Pv~~~l~~~~~~~er~~~~~~~~i~l~~~G~~l~~~~~~---- 159 (337)
.+..+..+.+....+...|.|+.+++++..+++.+++-+|+..++.++..||+++.|++++.+.+.|+++++.++.
T Consensus 159 ak~sl~fc~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~~~ 238 (416)
T KOG2765|consen 159 AKLSLFFCPLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQNS 238 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEeccccccc
Confidence 3445666777888999999999999999999999999999999999999999999999999999999999988632
Q ss_pred ----cchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChHHHHHHHhHHHHHHHHHHHHhhcccccc--cccccCccc
Q 019698 160 ----NINWIGVVYQMGGVVGEALRLIFMEILVKRKGLKLNPISVMYYVSPCSALCLFIPWIFLEKPKMD--ALETWHFPP 233 (337)
Q Consensus 160 ----~~~~~G~i~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~--~~~~~~~~~ 233 (337)
+.+..|.++++++++.||.|.++.||-..+++.+.+-..+..+..++..+++-|+..+.+....+ +.+......
T Consensus 239 ~~~a~~~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~~e~F~lP~~~q~~ 318 (416)
T KOG2765|consen 239 DLPASRPLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFGEERFELPSSTQFS 318 (416)
T ss_pred cCCccchhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhccCcccCCCCceeE
Confidence 23478999999999999999999999988886688888888888888888887776543321111 111111111
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhhhhHHHhhhhHhccCCcccchhhHHHHHHHHHHHHHhhhcccchh
Q 019698 234 LMLTLNCLCTFALNLSVFLVISHTSALTIRVAGVVKDWVVVLFSALLFADTKLTIINLFGYGIAIAGVAAYNNHKLKKE 312 (337)
Q Consensus 234 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~t~~~~~G~~li~~gv~l~~~~~~~~~ 312 (337)
.+++.+.+.+++..+.|.+++-.++|.....-..++...+++.+.++-+.+ +|+.+++|...|++|....++..+...
T Consensus 319 ~vv~~~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~-~S~~~iiGsi~Ifv~Fv~vn~~~~~~~ 396 (416)
T KOG2765|consen 319 LVVFNNLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKH-PSALYIIGSIPIFVGFVIVNISSENSK 396 (416)
T ss_pred eeeHhhHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCC-CCHHHHHHHHHHHHHHhheeccccccc
Confidence 345555677788889999999999999999999999999999998888888 999999999999999998887654433
No 21
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=99.86 E-value=1.4e-19 Score=149.55 Aligned_cols=250 Identities=14% Similarity=0.112 Sum_probs=188.6
Q ss_pred HHHHhhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhhcccccCCChhhhhhHhHHHHHHHHHHHHhhhhhhhcccHh
Q 019698 32 FNKWVLSSKEINFPFPLGLTLLHMVFSSVLCFLLTKVFKVMKVEDGMTLEIYTTSVIPIGAMFAMTLWLGNTAYLYISVA 111 (337)
Q Consensus 32 ~~k~~~~~~~~~~~~p~~~~~~r~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~ 111 (337)
..|.++. ... |...+++|..++.++++.+.+.++. +.+++++ +..+..|...+.++.+++.+++.+|.+
T Consensus 30 ~Ak~LFP----~vG-~~g~t~lRl~~aaLIll~l~RPwr~-----r~~~~~~-~~~~~yGvsLg~MNl~FY~si~riPlG 98 (292)
T COG5006 30 FAKSLFP----LVG-AAGVTALRLAIAALILLALFRPWRR-----RLSKPQR-LALLAYGVSLGGMNLLFYLSIERIPLG 98 (292)
T ss_pred HHHHHcc----ccC-hhhHHHHHHHHHHHHHHHHhhHHHh-----ccChhhh-HHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 4688888 566 9999999999999999998876653 3445554 588999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHhhhheeeeec---CccchHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019698 112 FAQMLKAIMPVAVFILGVAAGLEVMSCRMLLIMSVISFGVVVASYG---EININWIGVVYQMGGVVGEALRLIFMEILVK 188 (337)
Q Consensus 112 ~~~ii~~~~Pv~~~l~~~~~~~er~~~~~~~~i~l~~~G~~l~~~~---~~~~~~~G~i~~l~s~~~~a~~~v~~~~~~~ 188 (337)
.+..+.++.|+.+.+++ .+|..-..|. .+++.|+.+..-. ..+.|+.|..+.+.++.||+.|.+..||..+
T Consensus 99 iAVAiEF~GPL~vA~~~----sRr~~d~vwv--aLAvlGi~lL~p~~~~~~~lDp~Gv~~Al~AG~~Wa~YIv~G~r~g~ 172 (292)
T COG5006 99 IAVAIEFTGPLAVALLS----SRRLRDFVWV--ALAVLGIWLLLPLGQSVWSLDPVGVALALGAGACWALYIVLGQRAGR 172 (292)
T ss_pred hhhhhhhccHHHHHHHh----ccchhhHHHH--HHHHHHHHhheeccCCcCcCCHHHHHHHHHHhHHHHHHHHHcchhcc
Confidence 99999999999988876 3455444454 4556776665432 3567899999999999999999999999986
Q ss_pred hcCCCCChHHHHHHHhHHHHHHHHHHHHhhcccccccccccCccchHHHHHHHHHHHHHHH-HHHHHhhcchhHHHHHhh
Q 019698 189 RKGLKLNPISVMYYVSPCSALCLFIPWIFLEKPKMDALETWHFPPLMLTLNCLCTFALNLS-VFLVISHTSALTIRVAGV 267 (337)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~ 267 (337)
. .+....+......++++.+|+......+... .+... .+.+.-++++...-|+ -...+++.++.+.+....
T Consensus 173 ~----~~g~~g~a~gm~vAaviv~Pig~~~ag~~l~---~p~ll-~laLgvavlSSalPYsLEmiAL~rlp~~~F~~LlS 244 (292)
T COG5006 173 A----EHGTAGVAVGMLVAALIVLPIGAAQAGPALF---SPSLL-PLALGVAVLSSALPYSLEMIALRRLPARTFGTLLS 244 (292)
T ss_pred c----CCCchHHHHHHHHHHHHHhhhhhhhcchhhc---ChHHH-HHHHHHHHHhcccchHHHHHHHhhCChhHHHHHHH
Confidence 2 2556666666777777776765533222221 11111 1222223333333222 345699999999999999
Q ss_pred hhhHHHhhhhHhccCCcccchhhHHHHHHHHHHHHHhhhc
Q 019698 268 VKDWVVVLFSALLFADTKLTIINLFGYGIAIAGVAAYNNH 307 (337)
Q Consensus 268 ~~pv~~~i~~~~~~~e~~~t~~~~~G~~li~~gv~l~~~~ 307 (337)
++|.++.+.+++++||. +|+.||.|++.++.++.-....
T Consensus 245 LePa~aAl~G~i~L~e~-ls~~qwlaI~~ViaAsaG~~lt 283 (292)
T COG5006 245 LEPALAALSGLIFLGET-LTLIQWLAIAAVIAASAGSTLT 283 (292)
T ss_pred hhHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHhccccc
Confidence 99999999999999999 9999999999999998754443
No 22
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.85 E-value=7.2e-19 Score=149.26 Aligned_cols=294 Identities=17% Similarity=0.160 Sum_probs=228.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC----CCCCCchHHHHHHHHHHHHHHHHHHHHHhhhcccccCCChhhh
Q 019698 8 MFREQVLTYAYILLYIALSSGQIFFNKWVLSSK----EINFPFPLGLTLLHMVFSSVLCFLLTKVFKVMKVEDGMTLEIY 83 (337)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~----~~~~~~p~~~~~~r~~~a~~~l~~~~~~~~~~~~~~~~~~~~~ 83 (337)
+.++...+++....-+.+.....+++..+.+.+ +-.|.+|.++.+.|-+++.++....+.++++.. ..++ .
T Consensus 8 ~~~~~~~L~~c~~GI~~t~l~~gVlQEki~T~~y~~~~~rF~~~~fL~~~q~l~~~~~s~~~l~~~k~~~----~~~a-p 82 (327)
T KOG1581|consen 8 MANKIILLVFCFSGIYATFLTWGVLQEKIMTRPYGEDGERFEHSLFLVFCQRLVALLVSYAMLKWWKKEL----SGVA-P 82 (327)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcceeecccCcccccccccHHHHHHHHHHHHHHHHHHHhcccccC----CCCC-c
Confidence 345555555555556666666677776665531 236778999999999999998877665443321 1122 3
Q ss_pred hhHhHHHHHHHHHHHHhhhhhhhcccHhHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHhhhheeeeecC-----
Q 019698 84 TTSVIPIGAMFAMTLWLGNTAYLYISVAFAQMLKAIMPVAVFILGVAAGLEVMSCRMLLIMSVISFGVVVASYGE----- 158 (337)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~ii~~~~Pv~~~l~~~~~~~er~~~~~~~~i~l~~~G~~l~~~~~----- 158 (337)
+++....++......++++.|++|+|-++..+.+++.-+-+++++.++.|+|++.++.+...+..+|+.+....+
T Consensus 83 l~~y~~is~tn~~s~~~~yeaLKyvSyPtq~LaKscKmIPVmlmg~Lvy~~ky~~~eYl~~~LIs~GvsiF~l~~~s~s~ 162 (327)
T KOG1581|consen 83 LYKYSLISFTNTLSSWCGYEALKYVSYPTQTLAKSCKMIPVMLMGTLVYGRKYSSFEYLVAFLISLGVSIFSLFPNSDSS 162 (327)
T ss_pred hhHHhHHHHHhhcchHHHHHHHHhccchHHHHHHHhhhhHHHHHHHHHhcCccCcHHHHHHHHHHhheeeEEEecCCCCc
Confidence 446677788889999999999999999999999999999999999999999999999999999999998766531
Q ss_pred ----ccchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChHHHHHHHhHHHHHHHHHHHHhhcccccc--cccc-cCc
Q 019698 159 ----ININWIGVVYQMGGVVGEALRLIFMEILVKRKGLKLNPISVMYYVSPCSALCLFIPWIFLEKPKMD--ALET-WHF 231 (337)
Q Consensus 159 ----~~~~~~G~i~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~--~~~~-~~~ 231 (337)
.+..+.|+.++..+-++.++.+..+.++.++. ++++..++++.+++.++...... +..+.... +... -..
T Consensus 163 ~~~g~~ns~~G~~Ll~~~L~fDgfTn~tQd~lf~~~--k~s~~~mM~~vNLf~~i~~~~~l-i~qg~~~~av~F~~~hp~ 239 (327)
T KOG1581|consen 163 SKSGRENSPIGILLLFGYLLFDGFTNATQDSLFKKY--KVSSLHMMFGVNLFSAILNGTYL-ILQGHLLPAVSFIKEHPD 239 (327)
T ss_pred cccCCCCchHhHHHHHHHHHHHhhHHhHHHHHhccC--CccHhHHHHHHHHHHHHHHHHhh-hcCCCCchHHHHHHcChh
Confidence 12458999999999999999999999999944 89999999999999988875552 22221111 0000 011
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhhhhHHHhhhhHhccCCcccchhhHHHHHHHHHHHHHhhhcccc
Q 019698 232 PPLMLTLNCLCTFALNLSVFLVISHTSALTIRVAGVVKDWVVVLFSALLFADTKLTIINLFGYGIAIAGVAAYNNHKLK 310 (337)
Q Consensus 232 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~t~~~~~G~~li~~gv~l~~~~~~~ 310 (337)
.++-++..+.++...|...++-+++-+|.+....+.++..++++++.+.||++ +++.||+|..+++.|..+-...+++
T Consensus 240 ~~~Di~l~s~~gavGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~-~s~~q~~g~~iVFg~i~l~~~~k~~ 317 (327)
T KOG1581|consen 240 VAFDILLYSTCGAVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHP-LSSEQWLGVLIVFGGIFLEILLKKK 317 (327)
T ss_pred HHHHHHHHHHhhhhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCc-cchhhccCeeeehHHHHHHHHHHHh
Confidence 12445555677888888888999999999999999999999999999999999 9999999999999998875554444
No 23
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=99.85 E-value=1.5e-18 Score=147.23 Aligned_cols=283 Identities=14% Similarity=0.129 Sum_probs=208.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhhcccccC-CChhhhhhHh
Q 019698 9 FREQVLTYAYILLYIALSSGQIFFNKWVLSSKEINFPFPLGLTLLHMVFSSVLCFLLTKVFKVMKVEDG-MTLEIYTTSV 87 (337)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~p~~~~~~r~~~a~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~ 87 (337)
.+..+..+..-.+|+.. ....|.+- +.+ +..+...|...+..++..+....|+.+.-.+ .++++.+-.+
T Consensus 6 ~~Gil~~l~Ay~lwG~l----p~y~kll~-----~~~-~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~~~~~ 75 (293)
T COG2962 6 RKGILLALLAYLLWGLL----PLYFKLLE-----PLP-ATEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKTLLML 75 (293)
T ss_pred cchhHHHHHHHHHHHHH----HHHHHHHc-----cCC-HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHHHHHH
Confidence 45566667777777776 45667664 467 8999999999998888777666554332111 1111122255
Q ss_pred HHHHHHHHHHHHhhhhhhhcccHhHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHhhhheeeeecCccchHHHHH
Q 019698 88 IPIGAMFAMTLWLGNTAYLYISVAFAQMLKAIMPVAVFILGVAAGLEVMSCRMLLIMSVISFGVVVASYGEININWIGVV 167 (337)
Q Consensus 88 ~~~~~~~~~~~~~~~~al~~~~~~~~~ii~~~~Pv~~~l~~~~~~~er~~~~~~~~i~l~~~G~~l~~~~~~~~~~~G~i 167 (337)
...+...+.+.+.+.++.+.-.+-.++.-....|++.++++.+++|||+++.|+++++++.+|+........+.++....
T Consensus 76 ~l~a~li~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~~g~lpwval~ 155 (293)
T COG2962 76 ALTALLIGLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWLLGSLPWVALA 155 (293)
T ss_pred HHHHHHHHHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHcCCCcHHHHH
Confidence 55677788889999999988888788888889999999999999999999999999999999999988877778876644
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCCChHHHHHHHhHHHHHHHHHHHHhhcccccccccccCccchHHHHHHHHHHHHH
Q 019698 168 YQMGGVVGEALRLIFMEILVKRKGLKLNPISVMYYVSPCSALCLFIPWIFLEKPKMDALETWHFPPLMLTLNCLCTFALN 247 (337)
Q Consensus 168 ~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 247 (337)
+ +++|++|...-|+. ++++.+-.......-.+..+....+.+.......++....+.+++..|..+..--
T Consensus 156 l----a~sf~~Ygl~RK~~------~v~a~~g~~lE~l~l~p~al~yl~~l~~~~~~~~~~~~~~~~LLv~aG~vTavpL 225 (293)
T COG2962 156 L----ALSFGLYGLLRKKL------KVDALTGLTLETLLLLPVALIYLLFLADSGQFLQQNANSLWLLLVLAGLVTAVPL 225 (293)
T ss_pred H----HHHHHHHHHHHHhc------CCchHHhHHHHHHHHhHHHHHHHHHHhcCchhhhcCCchHHHHHHHhhHHHHHHH
Confidence 4 46788888775544 4577776666655444444333333332221011112233366777777777765
Q ss_pred HHHHHHHhhcchhHHHHHhhhhhHHHhhhhHhccCCcccchhhHHHHHHHHHHHHHhhhcccchh
Q 019698 248 LSVFLVISHTSALTIRVAGVVKDWVVVLFSALLFADTKLTIINLFGYGIAIAGVAAYNNHKLKKE 312 (337)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~t~~~~~G~~li~~gv~l~~~~~~~~~ 312 (337)
.....+-++.+=.+.++..|.+|....+++++++||+ ++..+.+.++.+.+|+.+|.....++.
T Consensus 226 ~lf~~aa~~lpls~~G~lqYi~Ptl~fllav~i~~E~-~~~~~~~~F~~IW~aL~l~~~d~l~~~ 289 (293)
T COG2962 226 LLFAAAAKRLPLSTLGFLQYIEPTLMFLLAVLIFGEP-FDSDQLVTFAFIWLALALFSIDGLYTA 289 (293)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666789999999999999999999999999999999 999999999999999999987655433
No 24
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=99.81 E-value=1.5e-17 Score=147.88 Aligned_cols=265 Identities=14% Similarity=0.083 Sum_probs=190.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhhcccccCCChhhhhhHhHHHHH
Q 019698 13 VLTYAYILLYIALSSGQIFFNKWVLSSKEINFPFPLGLTLLHMVFSSVLCFLLTKVFKVMKVEDGMTLEIYTTSVIPIGA 92 (337)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~p~~~~~~r~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (337)
+..+..++.|+..+. ..|... +.+ +..+. |..++.+++..+....++.+ .+.+..+..-...|.
T Consensus 4 l~~lia~~~wGs~g~----~~k~~~-----g~~-~~~~~--~~~~g~l~~~~~~~~~~~~~----~~~~~~~~~g~l~G~ 67 (290)
T TIGR00776 4 LIALIPALFWGSFVL----INVKIG-----GGP-YSQTL--GTTFGALILSIAIAIFVLPE----FWALSIFLVGLLSGA 67 (290)
T ss_pred HHHHHHHHHHhhhHH----HHhccC-----CCH-HHHHH--HHHHHHHHHHHHHHHHhCCc----ccccHHHHHHHHHHH
Confidence 445566777777653 445442 455 43333 77777777666554443211 122333334556677
Q ss_pred HHHHHHHhhhhhhhcccHhHHHHHHH-HHHHHHHHHHHHhcccccchhh----HHHHHHHhhhheeeeecCcc-------
Q 019698 93 MFAMTLWLGNTAYLYISVAFAQMLKA-IMPVAVFILGVAAGLEVMSCRM----LLIMSVISFGVVVASYGEIN------- 160 (337)
Q Consensus 93 ~~~~~~~~~~~al~~~~~~~~~ii~~-~~Pv~~~l~~~~~~~er~~~~~----~~~i~l~~~G~~l~~~~~~~------- 160 (337)
..+..+.+++.+.++++++.+..+.+ +.|+++.+.+.+++|||.++++ +.|++++++|+.+....+.+
T Consensus 68 ~w~ig~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~~~~~~~~~~ 147 (290)
T TIGR00776 68 FWALGQINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRSKDKSAGIKSE 147 (290)
T ss_pred HHHhhhhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEeccccccccccc
Confidence 78888999999999999999999988 8899999999999999999999 99999999999987653211
Q ss_pred ch-HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChHHH---HHHHhHHHHHHHHHHHHhhcccccccccccCccchHH
Q 019698 161 IN-WIGVVYQMGGVVGEALRLIFMEILVKRKGLKLNPISV---MYYVSPCSALCLFIPWIFLEKPKMDALETWHFPPLML 236 (337)
Q Consensus 161 ~~-~~G~i~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (337)
.+ ..|.+++++|+++|+.|.+..|+. +++|.+. ..+....++.+..++.. +.... .....+..
T Consensus 148 ~~~~~Gi~~~l~sg~~y~~~~~~~~~~------~~~~~~~~~~~~~g~~~~~~~~~~~~~--~~~~~-----~~~~~~~~ 214 (290)
T TIGR00776 148 FNFKKGILLLLMSTIGYLVYVVVAKAF------GVDGLSVLLPQAIGMVIGGIIFNLGHI--LAKPL-----KKYAILLN 214 (290)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHc------CCCcceehhHHHHHHHHHHHHHHHHHh--cccch-----HHHHHHHH
Confidence 33 679999999999999999999976 2477766 33333334444333321 11101 01111233
Q ss_pred HHHHHHHHHHHHHHHHHHh-hcchhHHHHHhhhhhHHHhhhhHhccCCcccchhhH----HHHHHHHHHHHHhhhc
Q 019698 237 TLNCLCTFALNLSVFLVIS-HTSALTIRVAGVVKDWVVVLFSALLFADTKLTIINL----FGYGIAIAGVAAYNNH 307 (337)
Q Consensus 237 ~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~t~~~~----~G~~li~~gv~l~~~~ 307 (337)
+..|++....+..++...+ +.++.+.++....+|+.+++++++++||+ .+..|+ +|.++++.|+.+....
T Consensus 215 ~~~Gi~~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~-~~~~~~~~~~iG~~lIi~~~~l~~~~ 289 (290)
T TIGR00776 215 ILPGLMWGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEK-KTKREMIAISVGIILIIIAANILGIG 289 (290)
T ss_pred HHHHHHHHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccC-CCcceeehhHHHHHHHHHHHHHHhcc
Confidence 3366666555666778888 99999999999999999999999999999 999999 9999999999876543
No 25
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.78 E-value=4.7e-18 Score=141.62 Aligned_cols=288 Identities=16% Similarity=0.150 Sum_probs=223.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCC-chHHHHHHHHHHHHHHHHHHHHHhhhcccccCCChhhhhhHh
Q 019698 9 FREQVLTYAYILLYIALSSGQIFFNKWVLSSKEINFP-FPLGLTLLHMVFSSVLCFLLTKVFKVMKVEDGMTLEIYTTSV 87 (337)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~-~p~~~~~~r~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (337)
++++-..+.......+.......+...+++ .-+++ +.|.+++.|+++-..+.++.+...+ +.+...+|| ..
T Consensus 38 kpkw~QFlic~~g~Ff~Yl~yGy~qElif~--~~gfkp~GWylTlvQf~~Ysg~glie~~~~~--~k~r~iP~r----tY 109 (367)
T KOG1582|consen 38 KPKWTQFLICSAGVFFLYLVYGYLQELIFN--VEGFKPFGWYLTLVQFLVYSGFGLIELQLIQ--TKRRVIPWR----TY 109 (367)
T ss_pred CchhhhHHHHHhHHHHHHHHHHHHHHHHhc--cccCcccchHHHHHHHHHHHhhhheEEEeec--ccceecchh----Hh
Confidence 334445555555555666667788899988 45666 7799999999977666555543222 222333444 44
Q ss_pred HHHHHHHHHHHHhhhhhhhcccHhHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHhhhheeeeecC----ccchH
Q 019698 88 IPIGAMFAMTLWLGNTAYLYISVAFAQMLKAIMPVAVFILGVAAGLEVMSCRMLLIMSVISFGVVVASYGE----ININW 163 (337)
Q Consensus 88 ~~~~~~~~~~~~~~~~al~~~~~~~~~ii~~~~Pv~~~l~~~~~~~er~~~~~~~~i~l~~~G~~l~~~~~----~~~~~ 163 (337)
...+.+..+...+.|-++.|++.+...+.+++.-+-+++.+.++-++|+.+.+..+..+..+|.++....| .++|.
T Consensus 110 ~~la~~t~gtmGLsn~SlgYLNYPtQviFKccKliPVmiggifIqGkRY~v~d~~aA~lm~lGli~FTLADs~~sPNF~~ 189 (367)
T KOG1582|consen 110 VILAFLTVGTMGLSNGSLGYLNYPTQVIFKCCKLIPVMIGGIFIQGKRYGVHDYIAAMLMSLGLIWFTLADSQTSPNFNL 189 (367)
T ss_pred hhhHhhhhhccccCcCccccccCcHHHHHHhhhhhhhhheeeeeccccccHHHHHHHHHHHHHHHhhhhcccccCCCcce
Confidence 55777778888999999999999999999999999999999999999999999999999999999887755 45788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChHHHHHHHhHHHHHHHHHHHHhhccccc----ccccccCccchHHHHH
Q 019698 164 IGVVYQMGGVVGEALRLIFMEILVKRKGLKLNPISVMYYVSPCSALCLFIPWIFLEKPKM----DALETWHFPPLMLTLN 239 (337)
Q Consensus 164 ~G~i~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 239 (337)
.|++++-.+-++.|.-...++|.++.++ -+..++++|....|.++++.+......-.. ..++++..-.+.++.
T Consensus 190 ~Gv~mIsgALl~DA~iGNvQEk~m~~~~--~ss~EmvfySy~iG~vflf~~mvlTge~f~a~~fcaehp~~tyGy~~~~- 266 (367)
T KOG1582|consen 190 IGVMMISGALLADAVIGNVQEKAMKMNP--ASSSEMVFYSYGIGFVFLFAPMVLTGELFSAWTFCAEHPVRTYGYAFLF- 266 (367)
T ss_pred eeHHHHHHHHHHHHHhhHHHHHHHhhCC--CCcceEEEeeecccHHHHHHHHHhcccchhhhHHHHhCcHhHHHHHHHH-
Confidence 9999999999999999999999999774 377899999999999998888765433211 122233222233333
Q ss_pred HHHHHHHHHHHHHHHhhcchhHHHHHhhhhhHHHhhhhHhccCCcccchhhHHHHHHHHHHHHHhhhcc
Q 019698 240 CLCTFALNLSVFLVISHTSALTIRVAGVVKDWVVVLFSALLFADTKLTIINLFGYGIAIAGVAAYNNHK 308 (337)
Q Consensus 240 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~t~~~~~G~~li~~gv~l~~~~~ 308 (337)
...+++.+..-..+++..+|..+..+...+..+++++|+++|.+| +|....-|..+++.|+++-.+.+
T Consensus 267 s~~gylG~~~VLalI~~fGA~~aatvTTaRKavTi~lSfllFsKP-fT~qy~~~gllv~lgI~Ln~ysk 334 (367)
T KOG1582|consen 267 SLAGYLGIVFVLALIKLFGALIAATVTTARKAVTILLSFLLFSKP-FTEQYVWSGLLVVLGIYLNMYSK 334 (367)
T ss_pred HHHhHhhHHHHHHHHHHhchhHHHHHHHhHhHHHHHHHHHHHcCc-hHHHHhhhhHHHHHHHHhhcccC
Confidence 344555554455678999999999999999999999999999999 99999999999999999877665
No 26
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.78 E-value=2e-18 Score=140.99 Aligned_cols=255 Identities=19% Similarity=0.226 Sum_probs=200.1
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHhhhcccccCCChhhhhhHhHHHHHHHHHHHHhhhhhhhcccHhHHHHHHHHHHH
Q 019698 43 NFPFPLGLTLLHMVFSSVLCFLLTKVFKVMKVEDGMTLEIYTTSVIPIGAMFAMTLWLGNTAYLYISVAFAQMLKAIMPV 122 (337)
Q Consensus 43 ~~~~p~~~~~~r~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~ii~~~~Pv 122 (337)
.|.+...+.+.|+.+..++.-++..+++ +.+.+... .+.....++-|.+.+...|.++|++|.++..+-++..|+
T Consensus 49 ~FTfalaLVf~qC~~N~vfAkvl~~ir~----~~~~D~t~-~~~YaAcs~sYLlAMVssN~Alq~vpYPTqVlgKScKPI 123 (337)
T KOG1580|consen 49 KFTFALALVFFQCTANTVFAKVLFLIRK----KTEIDNTP-TKMYAACSASYLLAMVSSNQALQYVPYPTQVLGKSCKPI 123 (337)
T ss_pred eehHHHHHHHHHHHHHHHHHHhheeecc----cccccCCc-chHHHHHHHHHHHHHHhccchhcccCCcHHHhcccCCCc
Confidence 4667889999999988777644433222 12222222 235566777899999999999999999999999999999
Q ss_pred HHHHHHHHhcccccchhhHHHHHHHhhhheeeeecC-------ccchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCC
Q 019698 123 AVFILGVAAGLEVMSCRMLLIMSVISFGVVVASYGE-------ININWIGVVYQMGGVVGEALRLIFMEILVKRKGLKLN 195 (337)
Q Consensus 123 ~~~l~~~~~~~er~~~~~~~~i~l~~~G~~l~~~~~-------~~~~~~G~i~~l~s~~~~a~~~v~~~~~~~~~~~~~~ 195 (337)
-++++++.+.|++++|++..++++++.|+++....+ .+.--+|-++.++|-...++....+.++.+.+ ..+
T Consensus 124 PVMilGVl~~~KsY~w~kY~cVL~IV~GValFmYK~~Kv~g~e~~t~g~GElLL~lSL~mDGlTg~~Qdrira~y--q~~ 201 (337)
T KOG1580|consen 124 PVMILGVLFAHKSYHWRKYCCVLMIVVGVALFMYKENKVGGAEDKTFGFGELLLILSLAMDGLTGSIQDRIRASY--QRT 201 (337)
T ss_pred ceeeeehhhhcccccHHHHHHHHHHHHHHHHhhccccccCCCcccccchHHHHHHHHHHhcccchhHHHHHHHhh--ccC
Confidence 999999999999999999999999999999987642 12235799999999999999999999987644 458
Q ss_pred hHHHHHHHhHHHHHHHHHHHHhh-cccccccc-cccCccchHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhhhhHHH
Q 019698 196 PISVMYYVSPCSALCLFIPWIFL-EKPKMDAL-ETWHFPPLMLTLNCLCTFALNLSVFLVISHTSALTIRVAGVVKDWVV 273 (337)
Q Consensus 196 ~~~~~~~~~~~~~i~l~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~ 273 (337)
...++.+.++.+.+.+.....+. |...+... +-....++-+...++.+.+.|.+.+..+...+|.+-+++...+..++
T Consensus 202 g~~MM~~~NlwStL~Lg~g~lfTGElweF~yF~~RhP~~~~~l~l~ai~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFT 281 (337)
T KOG1580|consen 202 GTSMMFYTNLWSTLYLGAGLLFTGELWEFFYFVQRHPYVFWDLTLLAIASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFT 281 (337)
T ss_pred chhhHHHHHHHHHHHhhhhheehhhHHHHHHHHHhccHHHHHHHHHHHHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHH
Confidence 88999999999988775444332 22211111 01112234456667788888888899999999999999999999999
Q ss_pred hhhhHhccCCcccchhhHHHHHHHHHHHHHhh
Q 019698 274 VLFSALLFADTKLTIINLFGYGIAIAGVAAYN 305 (337)
Q Consensus 274 ~i~~~~~~~e~~~t~~~~~G~~li~~gv~l~~ 305 (337)
++.|+++|+++ ++..||+|.++++.|...=.
T Consensus 282 il~SVllf~np-ls~rQwlgtvlVF~aL~~D~ 312 (337)
T KOG1580|consen 282 ILISVLLFNNP-LSGRQWLGTVLVFSALTADV 312 (337)
T ss_pred HHHHHHHhcCc-CcHHHHHHHHHHHHHhhhHh
Confidence 99999999999 99999999999999976543
No 27
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=99.77 E-value=1.1e-15 Score=133.48 Aligned_cols=282 Identities=14% Similarity=0.130 Sum_probs=206.8
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhh---cccccCCC------hhhhhhHhHHHH
Q 019698 21 LYIALSSGQIFFNKWVLSSKEINFPFPLGLTLLHMVFSSVLCFLLTKVFKV---MKVEDGMT------LEIYTTSVIPIG 91 (337)
Q Consensus 21 ~~~~~~~~~~~~~k~~~~~~~~~~~~p~~~~~~r~~~a~~~l~~~~~~~~~---~~~~~~~~------~~~~~~~~~~~~ 91 (337)
+-.+-+.++....|+.-..++..|. |-+..+.-=.+-.+++........+ .+.....+ +++. .+....+
T Consensus 22 ~~t~~~~~l~l~l~ys~~~~~~~f~-~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~-lk~~vPa 99 (345)
T KOG2234|consen 22 VLTAQNTALTLLLRYSRTREKPMFL-PTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRET-LKVSVPA 99 (345)
T ss_pred HHHHHHhhHHHHHHHHhcCCCCCcc-hhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHHH-HHHHHHH
Confidence 3334555667777777775544566 6666666556566666555543321 11111111 2233 3677778
Q ss_pred HHHHHHHHhhhhhhhcccHhHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHhhhheeeeec-----C------cc
Q 019698 92 AMFAMTLWLGNTAYLYISVAFAQMLKAIMPVAVFILGVAAGLEVMSCRMLLIMSVISFGVVVASYG-----E------IN 160 (337)
Q Consensus 92 ~~~~~~~~~~~~al~~~~~~~~~ii~~~~Pv~~~l~~~~~~~er~~~~~~~~i~l~~~G~~l~~~~-----~------~~ 160 (337)
++|+..+.+.+.++.+.+++++++...+..+.+++++++++++|++++||.++++...|+.+.-.+ + .+
T Consensus 100 ~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~~~~~~a~~~~~~~ 179 (345)
T KOG2234|consen 100 LIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLPSLSPTGAKSESSAQ 179 (345)
T ss_pred HHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCccCCCccc
Confidence 899999999999999999999999999999999999999999999999999999999999987621 1 12
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChHHHHHHHhHHHHHHHHHHHHhhcccccc---cccccCccc-hHH
Q 019698 161 INWIGVVYQMGGVVGEALRLIFMEILVKRKGLKLNPISVMYYVSPCSALCLFIPWIFLEKPKMD---ALETWHFPP-LML 236 (337)
Q Consensus 161 ~~~~G~i~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~---~~~~~~~~~-~~~ 236 (337)
.++.|....+.++...++..+|.+|++|+. +.+-+-.......+|.++.+......|..... ...+|.... ..+
T Consensus 180 n~~~G~~avl~~c~~SgfAgvYfEkiLK~s--~~s~wi~NiqL~~~g~~f~~l~~~~~d~~~i~~~gff~G~s~~vw~vV 257 (345)
T KOG2234|consen 180 NPFLGLVAVLVACFLSGFAGVYFEKILKGS--NVSLWIRNIQLYFFGILFNLLTILLQDGEAINEYGFFYGYSSIVWLVV 257 (345)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHHHHHHHHHhhccccccccCCccccccHHHHHHH
Confidence 347899999999999999999999999965 55666666666777777765555544443332 122343332 334
Q ss_pred HHHHHHHHHHHHHHHHHHhhcchhHHHHHhhhhhHHHhhhhHhccCCcccchhhHHHHHHHHHHHHHhhhcccch
Q 019698 237 TLNCLCTFALNLSVFLVISHTSALTIRVAGVVKDWVVVLFSALLFADTKLTIINLFGYGIAIAGVAAYNNHKLKK 311 (337)
Q Consensus 237 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~t~~~~~G~~li~~gv~l~~~~~~~~ 311 (337)
+..++.+... -..+|+.+...-+....+..+++.+.|+.+||.+ +|....+|..+++.++.+|...+.++
T Consensus 258 l~~a~gGLlv----s~v~KyADnIlK~f~~s~aiilt~v~S~~Lf~~~-~t~~F~lG~~lVi~Si~lY~~~P~~~ 327 (345)
T KOG2234|consen 258 LLNAVGGLLV----SLVMKYADNILKGFSTSVAIILTTVASIALFDFQ-LTLYFLLGALLVILSIFLYSLYPARD 327 (345)
T ss_pred HHHhccchhH----HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHccCC-chHHHHHHHHHHHHHHHHhhcCCccc
Confidence 4444444443 3447888999999999999999999999999999 99999999999999999998555443
No 28
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=99.76 E-value=1.4e-16 Score=133.53 Aligned_cols=279 Identities=16% Similarity=0.159 Sum_probs=204.3
Q ss_pred HHHHHHHHHHHHHhhccC---CCCCCchHHHHHHHHHHHHHHHHHHHHHhhhcccc------------cCCChhhhhhHh
Q 019698 23 IALSSGQIFFNKWVLSSK---EINFPFPLGLTLLHMVFSSVLCFLLTKVFKVMKVE------------DGMTLEIYTTSV 87 (337)
Q Consensus 23 ~~~~~~~~~~~k~~~~~~---~~~~~~p~~~~~~r~~~a~~~l~~~~~~~~~~~~~------------~~~~~~~~~~~~ 87 (337)
.+++...+++.||.-+-+ .-+++.|+..+..-++.-++++..+...+++...+ .+.+.+ ...+
T Consensus 12 vvsGs~Ntl~aKwadsi~~eg~pgfqhpvlqal~mFlGEflCl~vf~lir~~sn~~g~~s~~~~ilsq~~~pf~--p~lf 89 (372)
T KOG3912|consen 12 VVSGSFNTLVAKWADSIQAEGSPGFQHPVLQALLMFLGEFLCLAVFKLIRLRSNGQGVSSDLDSILSQDSSPFN--PVLF 89 (372)
T ss_pred hhhccHHHHHHHHHHhhhhhCCCccccHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccccccccCCCC--ccee
Confidence 355556688899985431 22488888777776665555544443322221111 001122 2356
Q ss_pred HHHHHHHHHHHHhhhhhhhcccHhHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHhhhheeeeecCc--------
Q 019698 88 IPIGAMFAMTLWLGNTAYLYISVAFAQMLKAIMPVAVFILGVAAGLEVMSCRMLLIMSVISFGVVVASYGEI-------- 159 (337)
Q Consensus 88 ~~~~~~~~~~~~~~~~al~~~~~~~~~ii~~~~Pv~~~l~~~~~~~er~~~~~~~~i~l~~~G~~l~~~~~~-------- 159 (337)
++.+++...+..+.+.++.+++++.++.++....+|+.+++..+++++++.++|+++....+|++.+...|.
T Consensus 90 l~Pal~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~d~~~~~~p~~ 169 (372)
T KOG3912|consen 90 LPPALCDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSLDVHLVTDPYT 169 (372)
T ss_pred cChHHHHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeeeecccccCCcc
Confidence 778999888999999999999999999999999999999999999999999999999999999988765421
Q ss_pred --cchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChHHHHHHHhHHHHHHHHHHHHh----hccccc-ccccc-cC-
Q 019698 160 --NINWIGVVYQMGGVVGEALRLIFMEILVKRKGLKLNPISVMYYVSPCSALCLFIPWIF----LEKPKM-DALET-WH- 230 (337)
Q Consensus 160 --~~~~~G~i~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~----~~~~~~-~~~~~-~~- 230 (337)
+....|+++.+++-+.-|.+.++.+|.++++ +.+|.+...|..++|.+.+...... ..++.+ .+... |.
T Consensus 170 d~s~iitGdllIiiaqiivaiQ~v~Eek~l~~~--nV~pl~avg~eGlfG~v~~slL~i~m~yi~~~~sfS~~~~g~~eD 247 (372)
T KOG3912|consen 170 DYSSIITGDLLIIIAQIIVAIQMVCEEKQLKKS--NVAPLQAVGWEGLFGLVILSLLAIPMYYIPSGDSFSCNPRGVLED 247 (372)
T ss_pred ccccchhhhHHHHHHHHHHHHHHHHHHhhhhhc--cCCHHHHhhhhhhHHHHHHHHHHHHHhheecCCcCcCCCCcchhh
Confidence 2236799999999999999999999999976 7899999999999996654333221 111111 11111 11
Q ss_pred ----------ccchHHHHHHH-H-HHHHHHHHHHHHhhcchhHHHHHhhhhhHHHhhhhHhccCCcccchhhHHHHHHHH
Q 019698 231 ----------FPPLMLTLNCL-C-TFALNLSVFLVISHTSALTIRVAGVVKDWVVVLFSALLFADTKLTIINLFGYGIAI 298 (337)
Q Consensus 231 ----------~~~~~~~~~~i-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~t~~~~~G~~li~ 298 (337)
.+...+...+. . -...|+......|..|+++-.....++..+-++++.....|. +...|+.|+++.+
T Consensus 248 ~~~~~~~~~e~p~l~val~~~~vSiAffNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~E~-f~llqilGFliLi 326 (372)
T KOG3912|consen 248 WGDAFAALQESPSLAVALIGFTVSIAFFNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGWEY-FHLLQILGFLILI 326 (372)
T ss_pred HHHHHHHhcCCchhHHHHhhhhhheeeeeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHHHH-HHHHHHHHHHHHH
Confidence 11122222222 2 233456666778899999999999999999999999999999 9999999999999
Q ss_pred HHHHHhhh
Q 019698 299 AGVAAYNN 306 (337)
Q Consensus 299 ~gv~l~~~ 306 (337)
.|.++|+-
T Consensus 327 ~Gi~lY~~ 334 (372)
T KOG3912|consen 327 MGIILYNQ 334 (372)
T ss_pred HHHHHHHH
Confidence 99999974
No 29
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=99.75 E-value=2.9e-16 Score=135.27 Aligned_cols=209 Identities=14% Similarity=0.156 Sum_probs=163.4
Q ss_pred hhhhhhHhHHHHHHHHHHHHhhhhhhhcccHhHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHhhhheeeeecCc
Q 019698 80 LEIYTTSVIPIGAMFAMTLWLGNTAYLYISVAFAQMLKAIMPVAVFILGVAAGLEVMSCRMLLIMSVISFGVVVASYGEI 159 (337)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~ii~~~~Pv~~~l~~~~~~~er~~~~~~~~i~l~~~G~~l~~~~~~ 159 (337)
+++.+ ++...+++|+..+.+.+.+++++++++++++..+..+++++++++++|+|++.+||.++.+.++|+++...++.
T Consensus 14 ~~~~~-~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~ 92 (244)
T PF04142_consen 14 PKDTL-KLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSS 92 (244)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCc
Confidence 45554 77788888999999999999999999999999999999999999999999999999999999999998754211
Q ss_pred -----------------cchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChHHHHHHHhHHHHHHHHHHHHhhcccc
Q 019698 160 -----------------NINWIGVVYQMGGVVGEALRLIFMEILVKRKGLKLNPISVMYYVSPCSALCLFIPWIFLEKPK 222 (337)
Q Consensus 160 -----------------~~~~~G~i~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~ 222 (337)
.....|+++.++++++.++..++.||.+|+++ .+.+.........+.+..++.....+...
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~--~s~~~~N~qL~~~gi~~~~~~~~~~~~~~ 170 (244)
T PF04142_consen 93 QSSDNSSSSSVHHDASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRSN--VSLWIQNMQLYLFGILFNLLALLLSDGSA 170 (244)
T ss_pred cccccccccccccccccchhHhHHHHHHHHHHHHHHHHHHHHHHhcccc--hhHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 11357999999999999999999999999764 46666666666666666655544444332
Q ss_pred ccc---ccccCccchH-HHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhhhhHHHhhhhHhccCCcccchhhHHHHHH
Q 019698 223 MDA---LETWHFPPLM-LTLNCLCTFALNLSVFLVISHTSALTIRVAGVVKDWVVVLFSALLFADTKLTIINLFGYGI 296 (337)
Q Consensus 223 ~~~---~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~t~~~~~G~~l 296 (337)
..+ .++++...+. ++...+.+.. ....+|+.+...-+....+..+++.+.++.+||.+ +|....+|..+
T Consensus 171 ~~~~g~f~G~~~~~~~~i~~~a~gGll----va~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~-~s~~f~lg~~~ 243 (244)
T PF04142_consen 171 ISESGFFHGYSWWVWIVIFLQAIGGLL----VAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFP-PSLSFLLGAAL 243 (244)
T ss_pred cccCCchhhcchHHHHHHHHHHHhhHH----HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCC-CchHHhhheec
Confidence 221 2233332222 2333333333 34568999999999999999999999999999999 99999999765
No 30
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=99.73 E-value=1.3e-18 Score=144.66 Aligned_cols=266 Identities=15% Similarity=0.118 Sum_probs=192.3
Q ss_pred HHHHHHHHHHHHHhhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhhcccccCCChhhhhhHhHHHHHHHHHHHHhhh
Q 019698 23 IALSSGQIFFNKWVLSSKEINFPFPLGLTLLHMVFSSVLCFLLTKVFKVMKVEDGMTLEIYTTSVIPIGAMFAMTLWLGN 102 (337)
Q Consensus 23 ~~~~~~~~~~~k~~~~~~~~~~~~p~~~~~~r~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (337)
+.+++.+.+.+|.... + |....-.|+++-.++.++... +++...--+..+|++ .+.-|..-..+..+.+
T Consensus 47 ~ff~~~~vv~t~~~e~------~-p~e~a~~r~l~~mlit~pcli-y~~~~v~gp~g~R~~---LiLRg~mG~tgvmlmy 115 (346)
T KOG4510|consen 47 YFFNSCMVVSTKVLEN------D-PMELASFRLLVRMLITYPCLI-YYMQPVIGPEGKRKW---LILRGFMGFTGVMLMY 115 (346)
T ss_pred HHHhhHHHhhhhhhcc------C-hhHhhhhhhhhehhhhheEEE-EEeeeeecCCCcEEE---EEeehhhhhhHHHHHH
Confidence 4555556666665533 3 888887786655555444432 222221111112222 2222444444566778
Q ss_pred hhhhcccHhHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHhhhheeeee-----cCc---------cchHHHHHH
Q 019698 103 TAYLYISVAFAQMLKAIMPVAVFILGVAAGLEVMSCRMLLIMSVISFGVVVASY-----GEI---------NINWIGVVY 168 (337)
Q Consensus 103 ~al~~~~~~~~~ii~~~~Pv~~~l~~~~~~~er~~~~~~~~i~l~~~G~~l~~~-----~~~---------~~~~~G~i~ 168 (337)
++++|+|.+.+.+|..++|+++.++++.++||+.++.+.++..+.+.|++++.- ++. +.+..|...
T Consensus 116 ya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPpFlFG~~t~g~~~s~~~~~~~gt~a 195 (346)
T KOG4510|consen 116 YALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPPFLFGDTTEGEDSSQVEYDIPGTVA 195 (346)
T ss_pred HHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCCcccCCCccccccccccccCCchHH
Confidence 999999999999999999999999999999999999999999999999999854 211 123457888
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCCChHHHHHHHhHHHHHHHHHHHHhhcccccccccccCccchHHHHHHHHHHHHHH
Q 019698 169 QMGGVVGEALRLIFMEILVKRKGLKLNPISVMYYVSPCSALCLFIPWIFLEKPKMDALETWHFPPLMLTLNCLCTFALNL 248 (337)
Q Consensus 169 ~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 248 (337)
++.+.+.-|.-.++.|++.| +.+....+.|....+.+..++........+. ... ..++++++.-|+.+++.|.
T Consensus 196 ai~s~lf~asvyIilR~iGk----~~h~~msvsyf~~i~lV~s~I~~~~ig~~~l--P~c-gkdr~l~~~lGvfgfigQI 268 (346)
T KOG4510|consen 196 AISSVLFGASVYIILRYIGK----NAHAIMSVSYFSLITLVVSLIGCASIGAVQL--PHC-GKDRWLFVNLGVFGFIGQI 268 (346)
T ss_pred HHHhHhhhhhHHHHHHHhhc----cccEEEEehHHHHHHHHHHHHHHhhccceec--Ccc-ccceEEEEEehhhhhHHHH
Confidence 88888888888999999977 4466666777777777766554433221111 111 2233556666889999999
Q ss_pred HHHHHHhhcchhHHHHHhhhhhHHHhhhhHhccCCcccchhhHHHHHHHHHHHHHhhhc
Q 019698 249 SVFLVISHTSALTIRVAGVVKDWVVVLFSALLFADTKLTIINLFGYGIAIAGVAAYNNH 307 (337)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~t~~~~~G~~li~~gv~l~~~~ 307 (337)
.....+++=.|...++..+.+-+++.++.+++|+|- +|++.|.|.++++.+..+....
T Consensus 269 llTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~-Pt~ws~~Ga~~vvsS~v~~a~~ 326 (346)
T KOG4510|consen 269 LLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHW-PTIWSWVGAVMVVSSTVWVALK 326 (346)
T ss_pred HHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCC-ChHHHhhceeeeehhHHHHHHH
Confidence 888999988888899999999999999999999999 9999999999998887765443
No 31
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=99.67 E-value=4.6e-16 Score=130.25 Aligned_cols=256 Identities=19% Similarity=0.209 Sum_probs=190.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhcccccCCChhhhhhHhHHHHHHHHHHHHhhhhhhhc-ccHhHHHHHHHHHHHHHH
Q 019698 47 PLGLTLLHMVFSSVLCFLLTKVFKVMKVEDGMTLEIYTTSVIPIGAMFAMTLWLGNTAYLY-ISVAFAQMLKAIMPVAVF 125 (337)
Q Consensus 47 p~~~~~~r~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~-~~~~~~~ii~~~~Pv~~~ 125 (337)
-..+++.|+++-..--+++. .+-...+++.+.+++ ......+...+.+.|+++++ +|.+...++++.+++.++
T Consensus 33 gNLITFaqFlFia~eGlif~--skf~~~k~kiplk~Y----~i~V~mFF~vnv~NN~al~f~I~~PlHiIfRsgsll~nM 106 (330)
T KOG1583|consen 33 GNLITFAQFLFIATEGLIFT--SKFFTVKPKIPLKDY----AITVAMFFIVNVTNNYALKFNIPMPLHIIFRSGSLLANM 106 (330)
T ss_pred eeehHHHHHHHHHHhceeee--ccccccCCCCchhhh----heehheeeeeeeeccceeeecccceEEEEEecCcHHHHH
Confidence 46889999886655544443 121222344444444 34555677788899999986 799999999999999999
Q ss_pred HHHHHhcccccchhhHHHHHHHhhhheeeeec---Cc---------c-----ch--HHHHHHHHHHHHHHHHHHHHHHHH
Q 019698 126 ILGVAAGLEVMSCRMLLIMSVISFGVVVASYG---EI---------N-----IN--WIGVVYQMGGVVGEALRLIFMEIL 186 (337)
Q Consensus 126 l~~~~~~~er~~~~~~~~i~l~~~G~~l~~~~---~~---------~-----~~--~~G~i~~l~s~~~~a~~~v~~~~~ 186 (337)
++++++.|+|++.+|+.++.+..+|+++.... |. + .. ..|+.+...+.+..|...++++..
T Consensus 107 ~~g~il~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~d~~~~~~~l~~~~~~~~~~~w~iGi~lL~~al~~sa~mgiyqE~~ 186 (330)
T KOG1583|consen 107 ILGWILLGKRYSLRQYSSVLMITIGIIICTLFSSKDGRSKLSGLDSGSAQSDFFWWLIGIALLVFALLLSAYMGIYQETT 186 (330)
T ss_pred HHHHHhccceeehhhhhhHHhhhhhheeEEeecCcchhhhhcccccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999987652 11 0 01 358888899999999999999999
Q ss_pred hhhcCCCCChHHHHHHHhHHHHHHHHHHH--Hhh--------cccccccc-cccCccchHHHHHHHHHHHHHHHHHHHHh
Q 019698 187 VKRKGLKLNPISVMYYVSPCSALCLFIPW--IFL--------EKPKMDAL-ETWHFPPLMLTLNCLCTFALNLSVFLVIS 255 (337)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~i~l~~~~--~~~--------~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 255 (337)
.|++++ ++-+.++|....+....+... +.. |.-..... ......|+.++.+++..+++--.-+.+..
T Consensus 187 Y~kyGK--h~~EalFytH~LsLP~Flf~~~div~~~~~~~~se~~~~p~~g~~vP~~~~yLl~n~L~Qy~CikgVy~L~t 264 (330)
T KOG1583|consen 187 YQKYGK--HWKEALFYTHFLSLPLFLFMGDDIVSHWRLAFKSESYLIPLLGFKVPSMWVYLLFNVLTQYFCIKGVYILTT 264 (330)
T ss_pred HHHhcC--ChHHHHHHHHHhccchHHHhcchHHHHHHHHhcCcceeccccCccccHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 998874 778888888765543321110 000 10000000 01122346678888888887666677788
Q ss_pred hcchhHHHHHhhhhhHHHhhhhHhccCCcccchhhHHHHHHHHHHHHHhhhcccch
Q 019698 256 HTSALTIRVAGVVKDWVVVLFSALLFADTKLTIINLFGYGIAIAGVAAYNNHKLKK 311 (337)
Q Consensus 256 ~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~t~~~~~G~~li~~gv~l~~~~~~~~ 311 (337)
++++.+++++-.++.-++.++|.+.|+++ +|+..|+|..+++.|-++|....++.
T Consensus 265 e~~sLTVTlvltlRKFvSLl~SiiyF~Np-ft~~h~lGa~lVF~Gt~~fa~~~~~~ 319 (330)
T KOG1583|consen 265 ETSSLTVTLVLTLRKFVSLLFSIIYFENP-FTPWHWLGAALVFFGTLLFANVWNHP 319 (330)
T ss_pred eecceEEEEeeeHHHHHHHhheeeEecCC-CCHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 99999999999999999999999999999 99999999999999999987654443
No 32
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=99.66 E-value=1.7e-15 Score=122.08 Aligned_cols=141 Identities=33% Similarity=0.517 Sum_probs=123.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhc---CCCCChHHHHHHHhHHHHHHHHHHHHhhccccccccc------c---cCcc
Q 019698 165 GVVYQMGGVVGEALRLIFMEILVKRK---GLKLNPISVMYYVSPCSALCLFIPWIFLEKPKMDALE------T---WHFP 232 (337)
Q Consensus 165 G~i~~l~s~~~~a~~~v~~~~~~~~~---~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~------~---~~~~ 232 (337)
|+++++.|.++.|+++++.|+..+++ +.+.++.++..|.++.+.+.++|.....|.+...... . ....
T Consensus 1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 80 (153)
T PF03151_consen 1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF 80 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence 68899999999999999999999873 3489999999999999999999998887776532111 1 1123
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhhhhHHHhhhhHhccCCcccchhhHHHHHHHHHHHHHhhh
Q 019698 233 PLMLTLNCLCTFALNLSVFLVISHTSALTIRVAGVVKDWVVVLFSALLFADTKLTIINLFGYGIAIAGVAAYNN 306 (337)
Q Consensus 233 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~t~~~~~G~~li~~gv~l~~~ 306 (337)
+..++.+++.++..|++.+++++++||.+.++.+.+|.+..++.|+++|||+ +|+.++.|.++.+.|+.+|++
T Consensus 81 ~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~-~t~~~~~G~~l~~~G~~~Ysy 153 (153)
T PF03151_consen 81 IFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEP-ITPLQIIGIVLALVGVLLYSY 153 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCc-CCHHHHHHHHHHHHHHheeeC
Confidence 3668888999999999999999999999999999999999999999999999 999999999999999999874
No 33
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=99.66 E-value=1e-16 Score=132.71 Aligned_cols=265 Identities=15% Similarity=0.162 Sum_probs=196.5
Q ss_pred HHHHHHhhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhhcccccCCChhhhhhHhHHHHHHHHHHHHhhhhhhhccc
Q 019698 30 IFFNKWVLSSKEINFPFPLGLTLLHMVFSSVLCFLLTKVFKVMKVEDGMTLEIYTTSVIPIGAMFAMTLWLGNTAYLYIS 109 (337)
Q Consensus 30 ~~~~k~~~~~~~~~~~~p~~~~~~r~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~ 109 (337)
.+.+..+-. .+.+.|...+|..+..-+++--+++..+++ . .+..||+.+..++...-.+.+...|.||++
T Consensus 34 a~tss~la~---k~iN~Pt~QtFl~Y~LLalVY~~~~~fR~~-----~--~~~~~~hYilla~~DVEaNy~vV~AyQyTs 103 (336)
T KOG2766|consen 34 AFTSSELAR---KGINAPTSQTFLNYVLLALVYGPIMLFRRK-----Y--IKAKWRHYILLAFVDVEANYFVVKAYQYTS 103 (336)
T ss_pred hhhhHHHHh---ccCCCccHHHHHHHHHHHHHHhhHHHhhhH-----H--HHHHHHHhhheeEEeecccEEEeeehhhcc
Confidence 334444444 257778888888877665555555443221 1 222345677778777777888889999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHhhhheeeeecCc--------cchHHHHHHHHHHHHHHHHHHH
Q 019698 110 VAFAQMLKAIMPVAVFILGVAAGLEVMSCRMLLIMSVISFGVVVASYGEI--------NINWIGVVYQMGGVVGEALRLI 181 (337)
Q Consensus 110 ~~~~~ii~~~~Pv~~~l~~~~~~~er~~~~~~~~i~l~~~G~~l~~~~~~--------~~~~~G~i~~l~s~~~~a~~~v 181 (337)
....+.+.+-...-+.+++++++|.|+++.+..|++++..|+++.++.|. +.+..|+.++++++-+||..++
T Consensus 104 mtSi~lLDcwaip~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~sDV~agd~aggsnp~~GD~lvi~GATlYaVSNv 183 (336)
T KOG2766|consen 104 MTSIMLLDCWAIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVFSDVHAGDRAGGSNPVKGDFLVIAGATLYAVSNV 183 (336)
T ss_pred hHHHHHHHHhhhHHHHHHHHHHHHHHHhhheeeeEEeEecceEEEEEeeeccccccCCCCCccCcEEEEecceeeeeccc
Confidence 99999999999999999999999999999999999999999999877542 2346799999999999999999
Q ss_pred HHHHHhhhcCCCCChHHHHHHHhHHHHHHHHHHHHhhcccccccccccCccchHHHHHHHHHHHHHHHHHHHHhhcchhH
Q 019698 182 FMEILVKRKGLKLNPISVMYYVSPCSALCLFIPWIFLEKPKMDALETWHFPPLMLTLNCLCTFALNLSVFLVISHTSALT 261 (337)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 261 (337)
..+.+.| |.+..+.+....++|++...+- ..+|..... ...|.......+...++-++..-..-..+|.++++.
T Consensus 184 ~EEflvk----n~d~~elm~~lgLfGaIIsaIQ-~i~~~~~~~-tl~w~~~i~~yl~f~L~MFllYsl~pil~k~~~aT~ 257 (336)
T KOG2766|consen 184 SEEFLVK----NADRVELMGFLGLFGAIISAIQ-FIFERHHVS-TLHWDSAIFLYLRFALTMFLLYSLAPILIKTNSATM 257 (336)
T ss_pred cHHHHHh----cCcHHHHHHHHHHHHHHHHHHH-Hhhhcccee-eEeehHHHHHHHHHHHHHHHHHHhhHHheecCCceE
Confidence 9999998 6699999999999999887555 455544331 223322222222222322332222335688899999
Q ss_pred HHHHhhhhhHHHhhhhHhccCCcccchhhHHHHHHHHHHHHHhhhcccchhh
Q 019698 262 IRVAGVVKDWVVVLFSALLFADTKLTIINLFGYGIAIAGVAAYNNHKLKKEA 313 (337)
Q Consensus 262 ~~~~~~~~pv~~~i~~~~~~~e~~~t~~~~~G~~li~~gv~l~~~~~~~~~~ 313 (337)
.++.-...+..++++ ..||-+ .+|.-.++++.++.|.++|..+++.++.
T Consensus 258 ~nlslLTsDmwsl~i--~~FgYh-v~wLY~laF~~i~~GliiYs~re~~~~e 306 (336)
T KOG2766|consen 258 FNLSLLTSDMWSLLI--RTFGYH-VDWLYFLAFATIATGLIIYSTREKDEEE 306 (336)
T ss_pred EEhhHhHHHHHHHHH--HHHhcc-hhhhhHHHHHHHHHhhEEeeccccCcHh
Confidence 999888889999888 688888 9999999999999999999665544433
No 34
>COG2510 Predicted membrane protein [Function unknown]
Probab=99.31 E-value=3.2e-11 Score=89.74 Aligned_cols=121 Identities=15% Similarity=0.064 Sum_probs=104.9
Q ss_pred HHHHHHhhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhhcccccCCChhhhhhHhHHHHHHHHHHHHhhhhhhhccc
Q 019698 30 IFFNKWVLSSKEINFPFPLGLTLLHMVFSSVLCFLLTKVFKVMKVEDGMTLEIYTTSVIPIGAMFAMTLWLGNTAYLYIS 109 (337)
Q Consensus 30 ~~~~k~~~~~~~~~~~~p~~~~~~r~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~ 109 (337)
.+..|.-++ +.+ |.+-++.|..+....+..+....++.+.....+.|.+ ..+...|+.-+....+++.+++.-.
T Consensus 19 ~iF~KIGl~----~vd-p~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~~~k~~-lflilSGla~glswl~Yf~ALk~G~ 92 (140)
T COG2510 19 PIFAKIGLE----GVD-PDFATTIRTIVILIFLLIVLLVTGNWQAGGEIGPKSW-LFLILSGLAGGLSWLLYFRALKKGK 92 (140)
T ss_pred HHHHHHhcc----ccC-ccHHHHHHHHHHHHHHHHHHHhcCceecccccCccee-hhhhHHHHHHHHHHHHHHHHHhcCC
Confidence 567899999 888 9999999999988888888777776655544555554 4777778888999999999999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHhhhheeeee
Q 019698 110 VAFAQMLKAIMPVAVFILGVAAGLEVMSCRMLLIMSVISFGVVVASY 156 (337)
Q Consensus 110 ~~~~~ii~~~~Pv~~~l~~~~~~~er~~~~~~~~i~l~~~G~~l~~~ 156 (337)
++...-+..++|+++.+++++++|||++..+|+|++++++|+++.+.
T Consensus 93 as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs~ 139 (140)
T COG2510 93 ASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVSL 139 (140)
T ss_pred cceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEec
Confidence 99999999999999999999999999999999999999999988753
No 35
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=99.28 E-value=1.9e-11 Score=94.62 Aligned_cols=119 Identities=23% Similarity=0.287 Sum_probs=95.9
Q ss_pred HHHHHHHHhhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhhcccccCCChhhhhhHhHHHHHH-HHHHHHhhhhhhh
Q 019698 28 GQIFFNKWVLSSKEINFPFPLGLTLLHMVFSSVLCFLLTKVFKVMKVEDGMTLEIYTTSVIPIGAM-FAMTLWLGNTAYL 106 (337)
Q Consensus 28 ~~~~~~k~~~~~~~~~~~~p~~~~~~r~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~al~ 106 (337)
...+.+|...+ +++ |...+++|+.++.+ +.++....++.+ ..+.+.++.. .....+.+ ......+++.+++
T Consensus 5 ~~~~~~k~~~~----~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~ 76 (126)
T PF00892_consen 5 IYSVFSKKLLK----KIS-PLSITFWRFLIAGI-LLILLLILGRKP-FKNLSPRQWL-WLLFLGLLGTALAYLLYFYALK 76 (126)
T ss_pred eHHHHHHHHhc----cCC-HHHHHHHHHHHHHH-HHHHHHhhcccc-ccCCChhhhh-hhhHhhccceehHHHHHHHHHH
Confidence 34567888888 677 99999999999987 554444333322 2344455544 55555655 6899999999999
Q ss_pred cccHhHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHhhhheee
Q 019698 107 YISVAFAQMLKAIMPVAVFILGVAAGLEVMSCRMLLIMSVISFGVVVA 154 (337)
Q Consensus 107 ~~~~~~~~ii~~~~Pv~~~l~~~~~~~er~~~~~~~~i~l~~~G~~l~ 154 (337)
+++++..+.+..+.|+++.+++++++|||++++++.|+++++.|+.+.
T Consensus 77 ~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~ 124 (126)
T PF00892_consen 77 YISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLI 124 (126)
T ss_pred hcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998764
No 36
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=99.27 E-value=4.9e-11 Score=102.19 Aligned_cols=191 Identities=13% Similarity=0.120 Sum_probs=126.9
Q ss_pred ccHhHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHhhhheeeee--------------------cCc-------c
Q 019698 108 ISVAFAQMLKAIMPVAVFILGVAAGLEVMSCRMLLIMSVISFGVVVASY--------------------GEI-------N 160 (337)
Q Consensus 108 ~~~~~~~ii~~~~Pv~~~l~~~~~~~er~~~~~~~~i~l~~~G~~l~~~--------------------~~~-------~ 160 (337)
++++.....++..|+++++.+..+.++|++..++++..+...|+..... ++. .
T Consensus 2 isvPa~~~~~s~~l~~v~l~~~~~~~~~~~~~~i~~~~l~~~g~l~~~ls~~q~~al~~l~~~~~~~~~~~~~~~~~~~g 81 (222)
T TIGR00803 2 LSVPIHIIFKQNNLVLIALGNLLAAGKQVTQLKILSTALMTLGSLVASLGDDQWFSLKLLKLGVAIVQMVQSSAKTLMFG 81 (222)
T ss_pred ccccchHHHHhcchHHHHHhcccccceeeehHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhHeeeecCCCCccccccc
Confidence 4667788888888999999888888888888888888888888764211 111 1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChHHHHHHHhHHHHHHHHHHHHhhccccccc---ccccCccchHHH
Q 019698 161 INWIGVVYQMGGVVGEALRLIFMEILVKRKGLKLNPISVMYYVSPCSALCLFIPWIFLEKPKMDA---LETWHFPPLMLT 237 (337)
Q Consensus 161 ~~~~G~i~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~---~~~~~~~~~~~~ 237 (337)
..+.|....+.+..+.++..++.++..|+++ ...+.......+.+.+.........+...... ...+....+.++
T Consensus 82 ~~~~g~~~~l~a~~~~~~~~~y~e~~~k~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (222)
T TIGR00803 82 NPVVGLSAVLSALLSSGFAGVYFEKILKDGD--TMFWSRNLQLPLFGLFSTFSVLLWSDGTLISNFGFFIGYPTAVWIVG 159 (222)
T ss_pred cHHHHHHHHHHHHHHHhhhHHHHHHcccCCC--CchHHHHHHHHHHHHHHHHHHHhhcccchhhccCcccCCchHHHHHH
Confidence 2366888888888888999999999877543 22222222222222222111111111111100 111111112222
Q ss_pred HHHHHHHHHHHHHHHHHhhcchhHHHHHhhhhhHHHhhhhHhccCCcccchhhHHHHHHHHHHHHHh
Q 019698 238 LNCLCTFALNLSVFLVISHTSALTIRVAGVVKDWVVVLFSALLFADTKLTIINLFGYGIAIAGVAAY 304 (337)
Q Consensus 238 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~t~~~~~G~~li~~gv~l~ 304 (337)
+.....+.+..+.+|+.++.+.++...++++++.++++++|||+ ++..+++|..+++.|+++|
T Consensus 160 ---~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~-ls~~~~~g~~lV~~~~~lY 222 (222)
T TIGR00803 160 ---LLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAK-ISSTFYLGAILVFLATFLY 222 (222)
T ss_pred ---HHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHeeeEeC
Confidence 22333334466889999999999999999999999999999999 9999999999999998765
No 37
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=99.27 E-value=3e-11 Score=96.68 Aligned_cols=224 Identities=16% Similarity=0.124 Sum_probs=163.3
Q ss_pred CChhhhhhHhHHHHHHHHHHHHhhhhhhhcccHhHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHhhhheeeeec
Q 019698 78 MTLEIYTTSVIPIGAMFAMTLWLGNTAYLYISVAFAQMLKAIMPVAVFILGVAAGLEVMSCRMLLIMSVISFGVVVASYG 157 (337)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~ii~~~~Pv~~~l~~~~~~~er~~~~~~~~i~l~~~G~~l~~~~ 157 (337)
++.+.+..+..|.+++..+.+..+..+++.++++.++.+..+.-.|+.+++++.+|+|+...++++.++++.|+++..+.
T Consensus 47 ~nik~~~~~taPF~i~Wt~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~ 126 (290)
T KOG4314|consen 47 FNIKLFFIRTAPFSIFWTGANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYA 126 (290)
T ss_pred ceeeeeeeeecceEEEEecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEec
Confidence 33445556777888888888899999999999999999999999999999999999999999999999999999999864
Q ss_pred C--ccchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChHHHHHHHhHHHHH----HHHHHHHh-hccccccccccc-
Q 019698 158 E--ININWIGVVYQMGGVVGEALRLIFMEILVKRKGLKLNPISVMYYVSPCSAL----CLFIPWIF-LEKPKMDALETW- 229 (337)
Q Consensus 158 ~--~~~~~~G~i~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i----~l~~~~~~-~~~~~~~~~~~~- 229 (337)
| ...++.|+..++.|+...|+|-+..|+..... +--+...+++..+.. ..+|+.+. +.+.. ..+++
T Consensus 127 DN~~a~e~iGi~~AV~SA~~aAlYKV~FK~~iGnA----n~Gdaa~FmS~LGF~NL~~~~~~~lIL~~T~VE--~~qsFA 200 (290)
T KOG4314|consen 127 DNEHADEIIGIACAVGSAFMAALYKVLFKMFIGNA----NFGDAAHFMSCLGFFNLCFISFPALILAFTGVE--HLQSFA 200 (290)
T ss_pred cchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccC----cchhHHHHHHHHHHHHHHHHhhhHHHHHHhchH--HHHHHh
Confidence 4 45678999999999999999999999987632 323333333333322 22233222 11111 11111
Q ss_pred CccchHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhhhhHHHhhhhHhccCCcccchhhHHHHHHHHHHHHHhhhcc
Q 019698 230 HFPPLMLTLNCLCTFALNLSVFLVISHTSALTIRVAGVVKDWVVVLFSALLFADTKLTIINLFGYGIAIAGVAAYNNHK 308 (337)
Q Consensus 230 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~t~~~~~G~~li~~gv~l~~~~~ 308 (337)
..+|-.+.....+....++.....+..+.|...++-+.........++.++-+-. .+.....|..++..|.++....+
T Consensus 201 ~~PWG~l~G~A~L~lAFN~~iN~GiaL~~PilISiG~l~~iP~NaaiDiL~q~l~-~ntl~La~T~iI~i~FiLiiiP~ 278 (290)
T KOG4314|consen 201 AAPWGCLCGAAGLSLAFNFLINFGIALLNPILISIGMLCGIPGNAAIDILFQELE-FNTLFLAATCIICIGFILIIIPE 278 (290)
T ss_pred hCCchhhhhHHHHHHHHhhheeehhhhhchhhheehheecCcchhHHHHHHHHHH-HHHHHHHHHHHHHHhHHheeccc
Confidence 1233444554555566666667778888898888877777667777776555545 88999999999999988765543
No 38
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=99.18 E-value=8.2e-11 Score=89.54 Aligned_cols=108 Identities=16% Similarity=0.145 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccccCCChhhhhhHhHHHHHHH-HHHHHhhhhhhhcccHhHHHHHHHHHHHHHHHHHHH
Q 019698 52 LLHMVFSSVLCFLLTKVFKVMKVEDGMTLEIYTTSVIPIGAMF-AMTLWLGNTAYLYISVAFAQMLKAIMPVAVFILGVA 130 (337)
Q Consensus 52 ~~r~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~al~~~~~~~~~ii~~~~Pv~~~l~~~~ 130 (337)
.+|+.++.+++..+....++.+...+.-+++.+..++..+.+. ...+.++++|+++.| +....+.++.|+++.+++.+
T Consensus 2 a~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~ 80 (113)
T PF13536_consen 2 AFRYLFSVLFLLIILLIRGRLRDLFRALRRKPWLWLILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWL 80 (113)
T ss_pred HHHHHHHHHHHHHHHHHHccHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHH
Confidence 4788888888887776544332211111122233445556654 488999999999999 58889999999999999999
Q ss_pred hcccccchhhHHHHHHHhhhheeeeecCcc
Q 019698 131 AGLEVMSCRMLLIMSVISFGVVVASYGEIN 160 (337)
Q Consensus 131 ~~~er~~~~~~~~i~l~~~G~~l~~~~~~~ 160 (337)
++|||++++++.+++++++|+++...++.+
T Consensus 81 ~~~er~~~~~~~a~~l~~~Gv~li~~~~~~ 110 (113)
T PF13536_consen 81 FFKERLSPRRWLAILLILIGVILIAWSDLT 110 (113)
T ss_pred HhcCCCCHHHHHHHHHHHHHHHHHhhhhcc
Confidence 999999999999999999999998876643
No 39
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=99.18 E-value=2.2e-10 Score=88.69 Aligned_cols=125 Identities=18% Similarity=0.227 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHHHhhhcCCCCChHHHHHHHhHHHHHHHHHHHHhhcccccccccccCccchHHHHHHHHHHHHHHHHHHH
Q 019698 174 VGEALRLIFMEILVKRKGLKLNPISVMYYVSPCSALCLFIPWIFLEKPKMDALETWHFPPLMLTLNCLCTFALNLSVFLV 253 (337)
Q Consensus 174 ~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 253 (337)
++||.+.++.|+..+ +.++.....+....+.+ .++.....+.... ...+.+.....+..+.+.....+..++++
T Consensus 1 ~~~a~~~~~~k~~~~----~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 74 (126)
T PF00892_consen 1 FSWAIYSVFSKKLLK----KISPLSITFWRFLIAGI-LLILLLILGRKPF-KNLSPRQWLWLLFLGLLGTALAYLLYFYA 74 (126)
T ss_pred ceeeeHHHHHHHHhc----cCCHHHHHHHHHHHHHH-HHHHHHhhccccc-cCCChhhhhhhhHhhccceehHHHHHHHH
Confidence 367889999999988 46999999999988887 5455444443321 11122222233344344356666778899
Q ss_pred HhhcchhHHHHHhhhhhHHHhhhhHhccCCcccchhhHHHHHHHHHHHHHhh
Q 019698 254 ISHTSALTIRVAGVVKDWVVVLFSALLFADTKLTIINLFGYGIAIAGVAAYN 305 (337)
Q Consensus 254 ~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~t~~~~~G~~li~~gv~l~~ 305 (337)
+++.++...+...+++|+++.++++++++|+ +++.+++|..+++.|+.+..
T Consensus 75 ~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~-~~~~~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 75 LKYISASIVSILQYLSPVFAAILGWLFLGER-PSWRQIIGIILIIIGVVLIS 125 (126)
T ss_pred HHhcchhHHHHHHHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999 99999999999999988754
No 40
>COG2510 Predicted membrane protein [Function unknown]
Probab=99.18 E-value=3.4e-10 Score=84.38 Aligned_cols=135 Identities=16% Similarity=0.142 Sum_probs=105.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChHHHHHHHhHHHHHHHHHHHHhhcccccccccccCccchHHHHHHHHHH
Q 019698 165 GVVYQMGGVVGEALRLIFMEILVKRKGLKLNPISVMYYVSPCSALCLFIPWIFLEKPKMDALETWHFPPLMLTLNCLCTF 244 (337)
Q Consensus 165 G~i~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 244 (337)
..++++++++++++..++.|--.+ +.||..-+..-++...+++..........+.....+ ...+..++.+|+.+.
T Consensus 4 ~~~~ALLsA~fa~L~~iF~KIGl~----~vdp~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~~-~k~~lflilSGla~g 78 (140)
T COG2510 4 AIIYALLSALFAGLTPIFAKIGLE----GVDPDFATTIRTIVILIFLLIVLLVTGNWQAGGEIG-PKSWLFLILSGLAGG 78 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc----ccCccHHHHHHHHHHHHHHHHHHHhcCceecccccC-cceehhhhHHHHHHH
Confidence 368899999999999999998777 457766666666666666544444433332221111 122345677788888
Q ss_pred HHHHHHHHHHhhcchhHHHHHhhhhhHHHhhhhHhccCCcccchhhHHHHHHHHHHHHHhh
Q 019698 245 ALNLSVFLVISHTSALTIRVAGVVKDWVVVLFSALLFADTKLTIINLFGYGIAIAGVAAYN 305 (337)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~t~~~~~G~~li~~gv~l~~ 305 (337)
...+++|++++...+..+.-..-+.|++++++|+++++|+ +|..+|+|+++|.+|..+..
T Consensus 79 lswl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~-ls~~~~iG~~LI~~Gailvs 138 (140)
T COG2510 79 LSWLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGER-LSLPTWIGIVLIVIGAILVS 138 (140)
T ss_pred HHHHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCC-CCHHHHHHHHHHHhCeeeEe
Confidence 8888999999999999999999999999999999999999 99999999999999987654
No 41
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=99.13 E-value=2.2e-08 Score=86.32 Aligned_cols=209 Identities=15% Similarity=0.108 Sum_probs=155.3
Q ss_pred hhhhhHhHHHHHHHHHHHHhhhhhhhcccHhHHHHHH-HHHHHHHHHHHHHhcccccchhhHH----HHHHHhhhheeee
Q 019698 81 EIYTTSVIPIGAMFAMTLWLGNTAYLYISVAFAQMLK-AIMPVAVFILGVAAGLEVMSCRMLL----IMSVISFGVVVAS 155 (337)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~ii~-~~~Pv~~~l~~~~~~~er~~~~~~~----~i~l~~~G~~l~~ 155 (337)
+.++ ..+..|++....+..++.++++++++.+.-+. ...-+.+.++++++++|.-+..++. ++++.++|+.+.+
T Consensus 43 ~~~~-~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts 121 (269)
T PF06800_consen 43 TSFI-VAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTS 121 (269)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhc
Confidence 4443 67788999999999999999999988887776 6677789999999999977766654 7888899999887
Q ss_pred ecCcc--------chHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChHHHHHHHhHHHHHHHHHHHHhhccccccccc
Q 019698 156 YGEIN--------INWIGVVYQMGGVVGEALRLIFMEILVKRKGLKLNPISVMYYVSPCSALCLFIPWIFLEKPKMDALE 227 (337)
Q Consensus 156 ~~~~~--------~~~~G~i~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~ 227 (337)
..|.+ ....|.+..+++.+.|..|.+..|-. +.+++....=+.+...+..+...... ....
T Consensus 122 ~~~~~~~~~~~~~~~~kgi~~Ll~stigy~~Y~~~~~~~------~~~~~~~~lPqaiGm~i~a~i~~~~~-~~~~---- 190 (269)
T PF06800_consen 122 YQDKKSDKSSSKSNMKKGILALLISTIGYWIYSVIPKAF------HVSGWSAFLPQAIGMLIGAFIFNLFS-KKPF---- 190 (269)
T ss_pred cccccccccccccchhhHHHHHHHHHHHHHHHHHHHHhc------CCChhHhHHHHHHHHHHHHHHHhhcc-cccc----
Confidence 74321 12459999999999999999997653 45887777755443333322222222 1111
Q ss_pred ccCccchHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhhhhHHHhhhhHhccCCcccchh----hHHHHHHHHHHHHH
Q 019698 228 TWHFPPLMLTLNCLCTFALNLSVFLVISHTSALTIRVAGVVKDWVVVLFSALLFADTKLTII----NLFGYGIAIAGVAA 303 (337)
Q Consensus 228 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~t~~----~~~G~~li~~gv~l 303 (337)
.+...+.-+.+|++-...+..++...++.+..+.-.+.-+..+++++.+.+++||. -+.. .++|.++++.|..+
T Consensus 191 -~~k~~~~nil~G~~w~ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~-Kt~ke~~~~~~G~~Liv~G~il 268 (269)
T PF06800_consen 191 -FEKKSWKNILTGLIWGIGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEK-KTKKEMIYTLIGLILIVIGAIL 268 (269)
T ss_pred -cccchHHhhHHHHHHHHHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEec-CchhhHHHHHHHHHHHHHhhhc
Confidence 11122444566676677777788889999999999999999999999999999999 7755 55688888887654
No 42
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=98.82 E-value=1.1e-07 Score=85.15 Aligned_cols=140 Identities=9% Similarity=0.109 Sum_probs=105.8
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChHHHHHHHhHHHHHHHHHHHHhhccccc-cc-ccccCccchHH
Q 019698 159 ININWIGVVYQMGGVVGEALRLIFMEILVKRKGLKLNPISVMYYVSPCSALCLFIPWIFLEKPKM-DA-LETWHFPPLML 236 (337)
Q Consensus 159 ~~~~~~G~i~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~-~~-~~~~~~~~~~~ 236 (337)
.+....|.++.+++.++|+...++.|.. . +++|.++..+...++.+++++.......... .. ...+. .+...
T Consensus 3 ~~~~~~g~~~~l~a~~~wg~~~~~~k~~-~----~~~~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~ 76 (296)
T PRK15430 3 AKQTRQGVLLALAAYFIWGIAPAYFKLI-Y----YVPADEILTHRVIWSFFFMVVLMSICRQWSYLKTLIQTPQ-KIFML 76 (296)
T ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHh-c----CCCHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcCHH-HHHHH
Confidence 3345679999999999999999999764 3 4799999999999988776555433221110 00 00111 11223
Q ss_pred HHHHHHHHHHHHHHHHHHhhcchhHHHHHhhhhhHHHhhhhHhccCCcccchhhHHHHHHHHHHHHHhh
Q 019698 237 TLNCLCTFALNLSVFLVISHTSALTIRVAGVVKDWVVVLFSALLFADTKLTIINLFGYGIAIAGVAAYN 305 (337)
Q Consensus 237 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~t~~~~~G~~li~~gv~l~~ 305 (337)
..+++.....+.+.+++++++++...++..++.|++..++++++++|+ ++..+++|.++.+.|+.+..
T Consensus 77 ~~~~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~-~~~~~~~g~~l~~~Gv~li~ 144 (296)
T PRK15430 77 AVSAVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGER-FRRMQWLAVILAICGVLVQL 144 (296)
T ss_pred HHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHHHHHH
Confidence 344455555667788999999999999999999999999999999999 99999999999999988754
No 43
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=98.82 E-value=1.4e-07 Score=82.61 Aligned_cols=135 Identities=13% Similarity=0.105 Sum_probs=104.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChHHHHHHHhHHHHHHHHHHHHhhccccc--cccc--ccCccchHHHHHH
Q 019698 165 GVVYQMGGVVGEALRLIFMEILVKRKGLKLNPISVMYYVSPCSALCLFIPWIFLEKPKM--DALE--TWHFPPLMLTLNC 240 (337)
Q Consensus 165 G~i~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~--~~~~--~~~~~~~~~~~~~ 240 (337)
|.++.++++++|+...+..|. .. +++|.++.++..+++.+.+++.......... .... ........+...+
T Consensus 3 g~~~~i~a~~~wg~~~~~~k~-~~----~~~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 77 (256)
T TIGR00688 3 GIIVSLLASFLFGYMYYYSKL-LK----PLPATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCG 77 (256)
T ss_pred cHHHHHHHHHHHHHHHHHHHH-hc----cCCHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHH
Confidence 789999999999999999997 33 4799999999999988776554433221100 0000 1111123455556
Q ss_pred HHHHHHHHHHHHHHhhcchhHHHHHhhhhhHHHhhhhHhccCCcccchhhHHHHHHHHHHHHHhh
Q 019698 241 LCTFALNLSVFLVISHTSALTIRVAGVVKDWVVVLFSALLFADTKLTIINLFGYGIAIAGVAAYN 305 (337)
Q Consensus 241 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~t~~~~~G~~li~~gv~l~~ 305 (337)
++....+.+.+++++++++.++++..++.|+++.++++++++|+ ++..+++|..+.+.|+.+..
T Consensus 78 ~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek-~~~~~~l~~~~~~~Gv~li~ 141 (256)
T TIGR00688 78 LLIGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKER-ISRFQFIAVIIATLGVISNI 141 (256)
T ss_pred HHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHH
Confidence 66666677788999999999999999999999999999999999 99999999999999987653
No 44
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=98.81 E-value=2e-07 Score=81.69 Aligned_cols=119 Identities=15% Similarity=0.148 Sum_probs=88.3
Q ss_pred HHHHHHHHHhhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhhcccccCCChhhhhhHhHHHHHH-HHHHHHhhhhhh
Q 019698 27 SGQIFFNKWVLSSKEINFPFPLGLTLLHMVFSSVLCFLLTKVFKVMKVEDGMTLEIYTTSVIPIGAM-FAMTLWLGNTAY 105 (337)
Q Consensus 27 ~~~~~~~k~~~~~~~~~~~~p~~~~~~r~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~al 105 (337)
....+..|...+ +.+.+ +.....+|+.++.+++.+.....++.+ ..+++++. ..+..+.+ ......++++++
T Consensus 141 a~~~~~~k~~~~--~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~ 213 (260)
T TIGR00950 141 ALGTVLYKRLVK--KEGPE-LLQFTGWVLLLGALLLLPFAWFLGPNP---QALSLQWG-ALLYLGLIGTALAYFLWNKGL 213 (260)
T ss_pred HHHHHHHhHHhh--cCCch-HHHHHHHHHHHHHHHHHHHHHhcCCCC---CcchHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 333556787766 22222 445555789988888877765433211 22344433 44545554 678899999999
Q ss_pred hcccHhHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHhhhhe
Q 019698 106 LYISVAFAQMLKAIMPVAVFILGVAAGLEVMSCRMLLIMSVISFGVV 152 (337)
Q Consensus 106 ~~~~~~~~~ii~~~~Pv~~~l~~~~~~~er~~~~~~~~i~l~~~G~~ 152 (337)
++.+++.++++.++.|+++.+++++++||+++..++.|..+.+.|+.
T Consensus 214 ~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~~ 260 (260)
T TIGR00950 214 TLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAVL 260 (260)
T ss_pred hcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999998863
No 45
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=98.81 E-value=1.2e-07 Score=84.21 Aligned_cols=133 Identities=10% Similarity=0.064 Sum_probs=96.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCCCChHHHHHHHhHHHHHHHHHHHHhhcccccccccccCccchHHHHHHHHHHH
Q 019698 166 VVYQMGGVVGEALRLIFMEILVKRKGLKLNPISVMYYVSPCSALCLFIPWIFLEKPKMDALETWHFPPLMLTLNCLCTFA 245 (337)
Q Consensus 166 ~i~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 245 (337)
.++.+.+++++|.+.+..|+..+++ ++. ..+.....++.+.|............... ...+.....+++....
T Consensus 3 ~~~~~~aa~~~a~~~~~~k~~~~~~----~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 75 (281)
T TIGR03340 3 LTLVVFSALMHAGWNLMAKSHADKE----PDF--LWWALLAHSVLLTPYGLWYLAQVGWSRLP-ATFWLLLAISAVANMV 75 (281)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCch----hHH--HHHHHHHHHHHHHHHHHHhcccCCCCCcc-hhhHHHHHHHHHHHHH
Confidence 5688999999999999999887632 332 34445555555555544321111001001 1122345556666677
Q ss_pred HHHHHHHHHhhcchhHHHHHhhhhhHHHhhhhHhccCCcccchhhHHHHHHHHHHHHHhhh
Q 019698 246 LNLSVFLVISHTSALTIRVAGVVKDWVVVLFSALLFADTKLTIINLFGYGIAIAGVAAYNN 306 (337)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~t~~~~~G~~li~~gv~l~~~ 306 (337)
.+.+.+++.++.++...+...+..|+++.++++++++|+ ++..+++|..+++.|+.+...
T Consensus 76 ~~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~-~~~~~~~g~~~~~~Gv~ll~~ 135 (281)
T TIGR03340 76 YFLGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGET-LSPLAWLGILIITLGLLVLGL 135 (281)
T ss_pred HHHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHHHhc
Confidence 777788899999999999999999999999999999999 999999999999999987654
No 46
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=98.58 E-value=9.3e-07 Score=78.73 Aligned_cols=64 Identities=17% Similarity=0.105 Sum_probs=59.3
Q ss_pred HHHHHHHhhhhhhhcccHhHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHhhhheeeee
Q 019698 93 MFAMTLWLGNTAYLYISVAFAQMLKAIMPVAVFILGVAAGLEVMSCRMLLIMSVISFGVVVASY 156 (337)
Q Consensus 93 ~~~~~~~~~~~al~~~~~~~~~ii~~~~Pv~~~l~~~~~~~er~~~~~~~~i~l~~~G~~l~~~ 156 (337)
.+..+..+.+.|+.+.|.+..+-+....-++..+++..++|||++++++.|+.+++.|..++..
T Consensus 59 ~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~ 122 (300)
T PF05653_consen 59 LMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVI 122 (300)
T ss_pred HHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEE
Confidence 3778888999999999999999999999999999999999999999999999999999887654
No 47
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=98.54 E-value=2.2e-06 Score=78.32 Aligned_cols=136 Identities=8% Similarity=0.088 Sum_probs=103.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCCCChHHHHHHHhHHHHHHHHHHHHhhcccccccccccCccchHHHHHHHHHHH
Q 019698 166 VVYQMGGVVGEALRLIFMEILVKRKGLKLNPISVMYYVSPCSALCLFIPWIFLEKPKMDALETWHFPPLMLTLNCLCTFA 245 (337)
Q Consensus 166 ~i~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 245 (337)
+..++...++|+.+.++.|...++ .+++.....+-..++++++++.....+.........|... ..+...++++..
T Consensus 15 ~~~~~~~q~~~~~~~~~~k~a~~~---G~~~~~~~~~R~~iA~l~Ll~~~~~~~~~~~~~~~~~~~~-~~l~l~g~~g~~ 90 (358)
T PLN00411 15 LTAMLATETSVVGISTLFKVATSK---GLNIYPFLGYSYLLASLLLLPSLFFTNRSRSLPPLSVSIL-SKIGLLGFLGSM 90 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHC---CCCccHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHH-HHHHHHHHHHHH
Confidence 566777889999999999999863 4789999999988888888777655433211111122221 223334455545
Q ss_pred HHHHHHHHHhhcchhHHHHHhhhhhHHHhhhhHhc------cCCcccchhhHHHHHHHHHHHHHhhh
Q 019698 246 LNLSVFLVISHTSALTIRVAGVVKDWVVVLFSALL------FADTKLTIINLFGYGIAIAGVAAYNN 306 (337)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~pv~~~i~~~~~------~~e~~~t~~~~~G~~li~~gv~l~~~ 306 (337)
.+...+..+++++|..+++..++.|+++.++++++ ++|+ ++..+++|.++.+.|+.+...
T Consensus 91 ~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er-~~~~~~~G~~l~~~Gv~ll~~ 156 (358)
T PLN00411 91 YVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKER-SSVAKVMGTILSLIGALVVIF 156 (358)
T ss_pred HHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhccc-ccHHHHHHHHHHHHHHHHHHH
Confidence 55567889999999999999999999999999999 6999 999999999999999987554
No 48
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=98.46 E-value=1.1e-05 Score=64.57 Aligned_cols=136 Identities=15% Similarity=0.062 Sum_probs=103.2
Q ss_pred HHHHHHHHHHHHHHHHHhhccC---CCCCCchHHHHHHHHHHHHHHHHHHHHHhhhcccccC--------CC-hhhhhhH
Q 019698 19 ILLYIALSSGQIFFNKWVLSSK---EINFPFPLGLTLLHMVFSSVLCFLLTKVFKVMKVEDG--------MT-LEIYTTS 86 (337)
Q Consensus 19 ~~~~~~~~~~~~~~~k~~~~~~---~~~~~~p~~~~~~r~~~a~~~l~~~~~~~~~~~~~~~--------~~-~~~~~~~ 86 (337)
++.-.++.+...+..|..++++ +.+.+ |..+..+....+.+++.+........+.... .+ .......
T Consensus 5 ~l~s~~~~al~~v~~~~~~~~~~~~~~~~~-~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (153)
T PF03151_consen 5 ALASSLFSALRNVLIKKLLKKVSSNSKKLN-PLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNFIFL 83 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccccCCC-HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHHHHH
Confidence 3344455555666778877742 24566 8999999999898888887665443331110 00 2233445
Q ss_pred hHHHHHHHHHHHHhhhhhhhcccHhHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHhhhheeee
Q 019698 87 VIPIGAMFAMTLWLGNTAYLYISVAFAQMLKAIMPVAVFILGVAAGLEVMSCRMLLIMSVISFGVVVAS 155 (337)
Q Consensus 87 ~~~~~~~~~~~~~~~~~al~~~~~~~~~ii~~~~Pv~~~l~~~~~~~er~~~~~~~~i~l~~~G~~l~~ 155 (337)
.+..+++....+...+..++++|+-+.++......+.+.++++++++|+++..++.|+++++.|..+-+
T Consensus 84 ~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ys 152 (153)
T PF03151_consen 84 LILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYS 152 (153)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheee
Confidence 666677788899999999999999999999999999999999999999999999999999999987643
No 49
>PRK13499 rhamnose-proton symporter; Provisional
Probab=98.45 E-value=0.00021 Score=64.45 Aligned_cols=217 Identities=11% Similarity=0.005 Sum_probs=138.0
Q ss_pred hHhHHHHHHHHHHHHhhhhhhhcccHhHHHHHH-HHHHHHHHHHHHHhccccc-------chhhHHHHHHHhhhheeeee
Q 019698 85 TSVIPIGAMFAMTLWLGNTAYLYISVAFAQMLK-AIMPVAVFILGVAAGLEVM-------SCRMLLIMSVISFGVVVASY 156 (337)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~al~~~~~~~~~ii~-~~~Pv~~~l~~~~~~~er~-------~~~~~~~i~l~~~G~~l~~~ 156 (337)
...+..|.+....+..+..++++++++...-+. .++-+...++..++++|-. ...-..|+++.++|+++.+.
T Consensus 74 ~~~~l~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~ 153 (345)
T PRK13499 74 LPVFLFGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGR 153 (345)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHH
Confidence 367778888999999999999999999887665 6788888999999888643 23467788888999998766
Q ss_pred ----cCc--------cc-hHHHHHHHHHHHHHHHHHH-------HHHHHHhhhcCCCCChHHHHHHHhH---HHHHHHHH
Q 019698 157 ----GEI--------NI-NWIGVVYQMGGVVGEALRL-------IFMEILVKRKGLKLNPISVMYYVSP---CSALCLFI 213 (337)
Q Consensus 157 ----~~~--------~~-~~~G~i~~l~s~~~~a~~~-------v~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~l~~ 213 (337)
.|. +. ...|.+..+++.+.++.|. ...+...+ . +.++.....-+.. .+....-+
T Consensus 154 Ag~~k~~~~~~~~~~~~~~~KGi~ialisgi~~~~f~~~~~~~~~~~~~a~~-~--g~~~~~~~lp~~~~~~~G~~~~n~ 230 (345)
T PRK13499 154 AGQLKERKMGIKKAEEFNLKKGLILAVMSGIFSACFSFAMDAGKPMHEAAAA-L--GVDPLYAALPSYVVIMGGGAITNL 230 (345)
T ss_pred hhhhcccccccccccccchHhHHHHHHHHHHHHHHHHHHHhhccchhhhhhh-c--CCCchHHHHHHHHHHHHHHHHHHH
Confidence 221 12 2569999999999999999 44333211 1 3344443333332 33332222
Q ss_pred HHHhh---ccccc---cccccc----CccchHHHHHHHHHHHHHHHHHHHHhhcchhHHH----HHhhhhhHHHhhhhHh
Q 019698 214 PWIFL---EKPKM---DALETW----HFPPLMLTLNCLCTFALNLSVFLVISHTSALTIR----VAGVVKDWVVVLFSAL 279 (337)
Q Consensus 214 ~~~~~---~~~~~---~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~----~~~~~~pv~~~i~~~~ 279 (337)
..-.. ..+.. .+...- ......-..+|+.-+..+..+....++.+..... +.+.+..+++.+++.
T Consensus 231 ~~~~~~~~k~~~~~~~~~~~~~~~~~~~n~l~~~l~G~~W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi- 309 (345)
T PRK13499 231 GFCFIRLAKNKDLSLKADFSLAKPLLITNVLLSALAGVMWYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGL- 309 (345)
T ss_pred HHHHHHHhhCCCcccchhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhhh-
Confidence 21111 11111 111110 0111333555666666666666666666433222 333666689999998
Q ss_pred ccCCcccc------hhhHHHHHHHHHHHHHhhh
Q 019698 280 LFADTKLT------IINLFGYGIAIAGVAAYNN 306 (337)
Q Consensus 280 ~~~e~~~t------~~~~~G~~li~~gv~l~~~ 306 (337)
+++|. -+ ...++|+++++.|..+...
T Consensus 310 ~lkE~-K~a~~k~~~~l~~G~vliI~g~~lig~ 341 (345)
T PRK13499 310 VLKEW-KGASRRPVRVLSLGCVVIILAANIVGL 341 (345)
T ss_pred hhhhc-cCCCccchhHHHHHHHHHHHHHHHHhh
Confidence 59998 66 6679999999999887654
No 50
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=98.42 E-value=3.8e-06 Score=63.31 Aligned_cols=64 Identities=20% Similarity=0.102 Sum_probs=59.7
Q ss_pred HHHHHHHHhhhhhhhcccHhHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHhhhheeee
Q 019698 92 AMFAMTLWLGNTAYLYISVAFAQMLKAIMPVAVFILGVAAGLEVMSCRMLLIMSVISFGVVVAS 155 (337)
Q Consensus 92 ~~~~~~~~~~~~al~~~~~~~~~ii~~~~Pv~~~l~~~~~~~er~~~~~~~~i~l~~~G~~l~~ 155 (337)
.+++....+...+++..|.+.+..+.++.|+++.+++++++|||++.++++|+.+++.|++++.
T Consensus 45 ~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~ 108 (111)
T PRK15051 45 ACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG 108 (111)
T ss_pred HHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence 4488899999999999999999999999999999999999999999999999999999987654
No 51
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=98.41 E-value=1e-05 Score=72.30 Aligned_cols=123 Identities=11% Similarity=0.040 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHHHhhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhhcccccCCChhhhhhHhHHHHHH-HHHHHHhh
Q 019698 23 IALSSGQIFFNKWVLSSKEINFPFPLGLTLLHMVFSSVLCFLLTKVFKVMKVEDGMTLEIYTTSVIPIGAM-FAMTLWLG 101 (337)
Q Consensus 23 ~~~~~~~~~~~k~~~~~~~~~~~~p~~~~~~r~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 101 (337)
.++.+...+..|...+ +.+ |.... +..+++.+.+.++...... ....++..+ ...+..+++ ..+...++
T Consensus 157 a~~~a~~~v~~r~~~~----~~~-~~~~~-~~~~~~~~~l~~~~~~~~~---~~~~~~~~~-~~~l~lgv~~t~~~~~l~ 226 (293)
T PRK10532 157 GACWAIYILSGQRAGA----EHG-PATVA-IGSLIAALIFVPIGALQAG---EALWHWSIL-PLGLAVAILSTALPYSLE 226 (293)
T ss_pred HHHHHHHHHHHHHHhc----cCC-chHHH-HHHHHHHHHHHHHHHHccC---cccCCHHHH-HHHHHHHHHHHHHHHHHH
Confidence 3444445666777655 455 66654 4455566655555433221 111223322 233444554 66778899
Q ss_pred hhhhhcccHhHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHhhhheeee
Q 019698 102 NTAYLYISVAFAQMLKAIMPVAVFILGVAAGLEVMSCRMLLIMSVISFGVVVAS 155 (337)
Q Consensus 102 ~~al~~~~~~~~~ii~~~~Pv~~~l~~~~~~~er~~~~~~~~i~l~~~G~~l~~ 155 (337)
++++++.+++.++++..+.|++..++++++++|+++..+++|..+.++|++...
T Consensus 227 ~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~ 280 (293)
T PRK10532 227 MIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGST 280 (293)
T ss_pred HHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998887754
No 52
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=98.35 E-value=1.9e-05 Score=61.00 Aligned_cols=119 Identities=13% Similarity=0.065 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChHHHHHHHhHHHHHHHHHHHHhhcccccccccccCccchHHHHHHHHHH
Q 019698 165 GVVYQMGGVVGEALRLIFMEILVKRKGLKLNPISVMYYVSPCSALCLFIPWIFLEKPKMDALETWHFPPLMLTLNCLCTF 244 (337)
Q Consensus 165 G~i~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 244 (337)
|+++.+.+.++-+...++.|+-.++.+ +.+.... . ... .. ...+ ++ ..+..+.++..
T Consensus 3 ~~~~i~~sv~l~~~gQl~~K~g~~~~g----~~~~~~~-~----~~~-~~-~~~~--------p~----~~i~lgl~~~~ 59 (129)
T PRK02971 3 GYLWGLASVLLASVAQLSLKWGMSRLP----LLSHAWD-F----IAA-LL-AFGL--------AL----RAVLLGLAGYA 59 (129)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhCC----CccchhH-H----HHH-HH-HHhc--------cH----HHHHHHHHHHH
Confidence 788999999999999999999887543 1111110 0 000 00 0000 00 11223233334
Q ss_pred HHHHHHHHHHhhcchhHHHHHhhhhhHHHhhhhHh--ccCCcccchhhHHHHHHHHHHHHHhhhc
Q 019698 245 ALNLSVFLVISHTSALTIRVAGVVKDWVVVLFSAL--LFADTKLTIINLFGYGIAIAGVAAYNNH 307 (337)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~i~~~~--~~~e~~~t~~~~~G~~li~~gv~l~~~~ 307 (337)
+....+.+.+++.+...+.......++...+.++. +|||+ +|+.+++|.++++.|+++.++.
T Consensus 60 la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~-ls~~~~iGi~lIi~GV~lv~~~ 123 (129)
T PRK02971 60 LSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNET-FSLKKTLGVACIMLGVWLINLP 123 (129)
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHHHHhccC
Confidence 44556778899999999998888888777777774 89999 9999999999999999997654
No 53
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=98.32 E-value=1.9e-07 Score=77.82 Aligned_cols=267 Identities=15% Similarity=0.122 Sum_probs=176.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhhcccccCCChhhhhhHhHHH
Q 019698 11 EQVLTYAYILLYIALSSGQIFFNKWVLSSKEINFPFPLGLTLLHMVFSSVLCFLLTKVFKVMKVEDGMTLEIYTTSVIPI 90 (337)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~p~~~~~~r~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (337)
+.+..+..+..|+..-. +.+|. +-+ |...+.--.+.|.++.+.+.+. ..+..+.+.+. --+..
T Consensus 3 ~~liaL~P~l~WGsip~---v~~k~-------GG~-p~qQ~lGtT~GALifaiiv~~~-----~~p~~T~~~~i-v~~is 65 (288)
T COG4975 3 DLLIALLPALGWGSIPL---VANKF-------GGK-PYQQTLGTTLGALIFAIIVFLF-----VSPELTLTIFI-VGFIS 65 (288)
T ss_pred hHHHHHHHHHHhcccce---eeeec-------CCC-hhHhhhhccHHHHHHHHHHhee-----ecCccchhhHH-HHHHh
Confidence 45566777888887642 23332 222 6655555555555554444332 12344455554 66777
Q ss_pred HHHHHHHHHhhhhhhhcccHhHHHHHH-HHHHHHHHHHHHHhcccccchhh----HHHHHHHhhhheeeeecCc---c-c
Q 019698 91 GAMFAMTLWLGNTAYLYISVAFAQMLK-AIMPVAVFILGVAAGLEVMSCRM----LLIMSVISFGVVVASYGEI---N-I 161 (337)
Q Consensus 91 ~~~~~~~~~~~~~al~~~~~~~~~ii~-~~~Pv~~~l~~~~~~~er~~~~~----~~~i~l~~~G~~l~~~~~~---~-~ 161 (337)
|++....+..++.++++++++.+.-+. .+.-+-+.+++++.++|-.+..+ ..++++.+.|+.+.+..|. + .
T Consensus 66 G~~Ws~GQ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~~~~nk~~~ 145 (288)
T COG4975 66 GAFWSFGQANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQDRNNKEEE 145 (288)
T ss_pred hhHhhhhhhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeeeecccccccc
Confidence 888999999999999999999887666 56788889999999999776654 3577888999999988542 1 1
Q ss_pred ---h-HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChHHHHHHHhHHHHHHHHHHHHhhcccccccccccCccchHHH
Q 019698 162 ---N-WIGVVYQMGGVVGEALRLIFMEILVKRKGLKLNPISVMYYVSPCSALCLFIPWIFLEKPKMDALETWHFPPLMLT 237 (337)
Q Consensus 162 ---~-~~G~i~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (337)
| -.|....+.|.+.|-.|.+..+... .+.+....-+..-..+..+.....-+.+.. +...+.-+
T Consensus 146 ~~~n~kkgi~~L~iSt~GYv~yvvl~~~f~------v~g~saiLPqAiGMv~~ali~~~~~~~~~~------~K~t~~ni 213 (288)
T COG4975 146 NPSNLKKGIVILLISTLGYVGYVVLFQLFD------VDGLSAILPQAIGMVIGALILGFFKMEKRF------NKYTWLNI 213 (288)
T ss_pred ChHhhhhheeeeeeeccceeeeEeeecccc------ccchhhhhHHHHHHHHHHHHHhhcccccch------HHHHHHHH
Confidence 1 3588888889999999999887662 355555544433222222122122121111 11123445
Q ss_pred HHHHHHHHHHHHHHHHHhhcchhHHHHHhhhhhHHHhhhhHhccCCcccchhh----HHHHHHHHHHHHHhhhc
Q 019698 238 LNCLCTFALNLSVFLVISHTSALTIRVAGVVKDWVVVLFSALLFADTKLTIIN----LFGYGIAIAGVAAYNNH 307 (337)
Q Consensus 238 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~t~~~----~~G~~li~~gv~l~~~~ 307 (337)
..|+.-...|...+.+.++.+-.+.-.+.-+..+++++-+.++++|+ -|..+ ++|++++++|..+....
T Consensus 214 i~G~~Wa~GNl~ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ek-KtkkEm~~v~iGiilivvgai~lg~~ 286 (288)
T COG4975 214 IPGLIWAIGNLFMLLAAQKVGVATSFSLSQLGVIISTIGGILFLGEK-KTKKEMVYVIIGIILIVVGAILLGIA 286 (288)
T ss_pred hhHHHHHhhHHHHHHhhhhhceeeeeeHhhheeeeeecceEEEEecc-CchhhhhhhhhhHHHHHHHhhhhhee
Confidence 55666666677767777777766666677788899999999999999 88665 56888888887765443
No 54
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=98.31 E-value=2.7e-05 Score=69.58 Aligned_cols=108 Identities=18% Similarity=0.162 Sum_probs=82.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhcccccCCChhhhhhHhHHHHHH-HHHHHHhhhhhhhcccHhHHHHHHHHHHHHHH
Q 019698 47 PLGLTLLHMVFSSVLCFLLTKVFKVMKVEDGMTLEIYTTSVIPIGAM-FAMTLWLGNTAYLYISVAFAQMLKAIMPVAVF 125 (337)
Q Consensus 47 p~~~~~~r~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~al~~~~~~~~~ii~~~~Pv~~~ 125 (337)
+...+.+++.++...+.++...... ......+.+.+. ..+..+++ ......++++++++.+++.++++..+.|++.+
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~i~~l~i~~s~~~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~ 254 (292)
T PRK11272 177 GMMAGAAEMLAAGVVLLIASLLSGE-RLTALPTLSGFL-ALGYLAVFGSIIAISAYMYLLRNVRPALATSYAYVNPVVAV 254 (292)
T ss_pred chHHHHHHHHHHHHHHHHHHHHcCC-cccccCCHHHHH-HHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH
Confidence 5567788988888877666543221 111112234433 44445554 66788899999999999999999999999999
Q ss_pred HHHHHhcccccchhhHHHHHHHhhhheeeee
Q 019698 126 ILGVAAGLEVMSCRMLLIMSVISFGVVVASY 156 (337)
Q Consensus 126 l~~~~~~~er~~~~~~~~i~l~~~G~~l~~~ 156 (337)
++++++++|+++..++.|.++.+.|+.+...
T Consensus 255 i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~ 285 (292)
T PRK11272 255 LLGTGLGGETLSPIEWLALGVIVFAVVLVTL 285 (292)
T ss_pred HHHHHHcCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999877644
No 55
>PRK11689 aromatic amino acid exporter; Provisional
Probab=98.23 E-value=3.9e-05 Score=68.65 Aligned_cols=127 Identities=8% Similarity=-0.001 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhhcccccCCChhhhhhHhHHHHHHHHHHH
Q 019698 19 ILLYIALSSGQIFFNKWVLSSKEINFPFPLGLTLLHMVFSSVLCFLLTKVFKVMKVEDGMTLEIYTTSVIPIGAMFAMTL 98 (337)
Q Consensus 19 ~~~~~~~~~~~~~~~k~~~~~~~~~~~~p~~~~~~r~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (337)
.+.-..+.+...+.+|..-+ +.+ |.... . ..+...+.+.... ... .....+.+.+. ..+..++.....+
T Consensus 161 ~l~aa~~~A~~~v~~k~~~~----~~~-~~~~~--~-~~~~~~l~~~~~~-~~~-~~~~~~~~~~~-~l~~~~~~t~~~~ 229 (295)
T PRK11689 161 AFIGAFIWAAYCNVTRKYAR----GKN-GITLF--F-ILTALALWIKYFL-SPQ-PAMVFSLPAII-KLLLAAAAMGFGY 229 (295)
T ss_pred HHHHHHHHHHHHHHHhhccC----CCC-chhHH--H-HHHHHHHHHHHHH-hcC-ccccCCHHHHH-HHHHHHHHHHHHH
Confidence 33333444445667777644 344 54432 2 2222333322222 211 11223344433 4455555677789
Q ss_pred HhhhhhhhcccHhHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHhhhheeeee
Q 019698 99 WLGNTAYLYISVAFAQMLKAIMPVAVFILGVAAGLEVMSCRMLLIMSVISFGVVVASY 156 (337)
Q Consensus 99 ~~~~~al~~~~~~~~~ii~~~~Pv~~~l~~~~~~~er~~~~~~~~i~l~~~G~~l~~~ 156 (337)
.++++++++.|++..+.+.++.|++..++++++++|+++..+++|.++++.|+.+...
T Consensus 230 ~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~ 287 (295)
T PRK11689 230 AAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWL 287 (295)
T ss_pred HHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999876543
No 56
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=98.22 E-value=1.1e-05 Score=72.45 Aligned_cols=135 Identities=11% Similarity=-0.000 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhhccccc-C-------CChhhhhhHhHHH
Q 019698 19 ILLYIALSSGQIFFNKWVLSSKEINFPFPLGLTLLHMVFSSVLCFLLTKVFKVMKVED-G-------MTLEIYTTSVIPI 90 (337)
Q Consensus 19 ~~~~~~~~~~~~~~~k~~~~~~~~~~~~p~~~~~~r~~~a~~~l~~~~~~~~~~~~~~-~-------~~~~~~~~~~~~~ 90 (337)
+....++.+...+..|...+ +.+++ |..++.++...+.+.+.++........... + ......+...+..
T Consensus 150 ~l~a~~~~a~~~v~~k~~~~--~~~~~-~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (302)
T TIGR00817 150 AMISNITFVSRNIFSKKAMT--IKSLD-KTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTVSLVA 226 (302)
T ss_pred HHHHHHHHHHHHHHHHHhhc--cCCCC-cccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHHHHHH
Confidence 33334444445566676655 22456 889999999988888888765432211000 0 0000111112222
Q ss_pred HH-HHHHHHHhhhhhhhcccHhHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHhhhheeeee
Q 019698 91 GA-MFAMTLWLGNTAYLYISVAFAQMLKAIMPVAVFILGVAAGLEVMSCRMLLIMSVISFGVVVASY 156 (337)
Q Consensus 91 ~~-~~~~~~~~~~~al~~~~~~~~~ii~~~~Pv~~~l~~~~~~~er~~~~~~~~i~l~~~G~~l~~~ 156 (337)
+. .+...+.+.+.+++.+|+..+++...+.|++++++++++++|+++..+++|.++++.|+.+...
T Consensus 227 ~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~ 293 (302)
T TIGR00817 227 AMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSR 293 (302)
T ss_pred HHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHH
Confidence 22 3344445667899999999999999999999999999999999999999999999999877543
No 57
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=98.19 E-value=7.1e-05 Score=68.58 Aligned_cols=138 Identities=12% Similarity=0.116 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCC-hHHHHHHHhHHHHHHHHHHHHhhcccccccccccCccchHHHHHHH
Q 019698 163 WIGVVYQMGGVVGEALRLIFMEILVKRKGLKLN-PISVMYYVSPCSALCLFIPWIFLEKPKMDALETWHFPPLMLTLNCL 241 (337)
Q Consensus 163 ~~G~i~~l~s~~~~a~~~v~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 241 (337)
+.-..+++.=-.+-..++++.|..+++ .+ |+.+..++..++.+...+.+.....+.. ....+...+..++..++
T Consensus 48 ~~~~~~~~~wy~~s~~~~~~nK~vl~~----~~~P~~l~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~llp~gl 122 (350)
T PTZ00343 48 WKLALLFLTWYALNVLYVVDNKLALNM----LPLPWTISSLQLFVGWLFALLYWATGFRKIP-RIKSLKLFLKNFLPQGL 122 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh----CChhHHHHHHHHHHHHHHHHHHHHhCCCCCC-CCCCHHHHHHHHHHHHH
Confidence 333344444444445668888998874 46 9999999998887765444332111111 01111112223444455
Q ss_pred HHHHHHHHHHHHHhhcchhHHHHHhhhhhHHHhhhhHhccCCcccchhhHHHHHHHHHHHHHhhh
Q 019698 242 CTFALNLSVFLVISHTSALTIRVAGVVKDWVVVLFSALLFADTKLTIINLFGYGIAIAGVAAYNN 306 (337)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~t~~~~~G~~li~~gv~l~~~ 306 (337)
++...+...+.+++++++....+...+.|++++++++++++|+ ++..++.|.++++.|+.+...
T Consensus 123 ~~~~~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek-~s~~~~l~l~l~v~Gv~l~~~ 186 (350)
T PTZ00343 123 CHLFVHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQF-LNLYAYLSLIPIVGGVALASV 186 (350)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCC-ccHHHHHHHHHHHHHHHheec
Confidence 5555555566889999999999999999999999999999999 999999999999999987653
No 58
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=98.15 E-value=9.9e-05 Score=66.19 Aligned_cols=125 Identities=18% Similarity=0.127 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCCCChHHHHHHHhHHHHHHHHHHHHhhcccccccccccCccchHHHHHHHHHHH
Q 019698 166 VVYQMGGVVGEALRLIFMEILVKRKGLKLNPISVMYYVSPCSALCLFIPWIFLEKPKMDALETWHFPPLMLTLNCLCTFA 245 (337)
Q Consensus 166 ~i~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 245 (337)
.++.++++++|+...+..|...+ +.+|.....+-..++++.+++... .+. ..+ ..+...++....
T Consensus 6 ~l~~l~~~~~Wg~~~~~~k~~~~----~~~p~~~~~~R~~~a~~~l~~~~~---~~~----~~~----~~~~~~g~~~~~ 70 (299)
T PRK11453 6 GVLALLVVVVWGLNFVVIKVGLH----NMPPLMLAGLRFMLVAFPAIFFVA---RPK----VPL----NLLLGYGLTISF 70 (299)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHh----cCCHHHHHHHHHHHHHHHHHHHhc---CCC----Cch----HHHHHHHHHHHH
Confidence 36688899999999999998776 579999999998776655443321 111 011 112222333222
Q ss_pred -HHHHHHHHHhh-cchhHHHHHhhhhhHHHhhhhHhccCCcccchhhHHHHHHHHHHHHHhhh
Q 019698 246 -LNLSVFLVISH-TSALTIRVAGVVKDWVVVLFSALLFADTKLTIINLFGYGIAIAGVAAYNN 306 (337)
Q Consensus 246 -~~~~~~~~~~~-~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~t~~~~~G~~li~~gv~l~~~ 306 (337)
.....+...++ .++...++..++.|+++.++++++++|+ ++..+++|.++.+.|+.+...
T Consensus 71 ~~~~~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~-~~~~~~~~~~l~~~Gv~ll~~ 132 (299)
T PRK11453 71 GQFAFLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGER-LQGKQLAGIALAIFGVLVLIE 132 (299)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCc-CcHHHHHHHHHHHHhHHHhcc
Confidence 22334556666 5778889899999999999999999999 999999999999999887653
No 59
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=98.11 E-value=3.7e-05 Score=58.28 Aligned_cols=70 Identities=20% Similarity=0.198 Sum_probs=57.7
Q ss_pred HHHHHHHH-HHHHHHHHHHhhcchhHHHHHhhhhhHHHhhhhHhccCCcccchhhHHHHHHHHHHHHHhhhcc
Q 019698 237 TLNCLCTF-ALNLSVFLVISHTSALTIRVAGVVKDWVVVLFSALLFADTKLTIINLFGYGIAIAGVAAYNNHK 308 (337)
Q Consensus 237 ~~~~i~~~-~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~t~~~~~G~~li~~gv~l~~~~~ 308 (337)
+..+++.. ..+..++++.++.++ .......+.|+++.++++++++|+ ++..+++|..+++.|+.+....+
T Consensus 38 ~~~g~~~~~~~~~~~~~a~~~~~~-~v~~i~~~~pi~~~ll~~~~~~er-~~~~~~~a~~l~~~Gv~li~~~~ 108 (113)
T PF13536_consen 38 ILAGLLGFGVAYLLFFYALSYAPA-LVAAIFSLSPIFTALLSWLFFKER-LSPRRWLAILLILIGVILIAWSD 108 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHHhhhh
Confidence 33344443 445556788899885 777889999999999999999999 99999999999999999887654
No 60
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=98.05 E-value=8.2e-05 Score=64.21 Aligned_cols=141 Identities=16% Similarity=0.141 Sum_probs=103.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChHHHHHHHhHHHHHHHHHHHHhhccccc-ccccccCccchHHHHHH
Q 019698 162 NWIGVVYQMGGVVGEALRLIFMEILVKRKGLKLNPISVMYYVSPCSALCLFIPWIFLEKPKM-DALETWHFPPLMLTLNC 240 (337)
Q Consensus 162 ~~~G~i~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 240 (337)
+..|+++++.+-+.|++-..|.|-+. +.++.++..+-.+.+.++++.........+. .+...-...+..+..++
T Consensus 5 ~~~Gil~~l~Ay~lwG~lp~y~kll~-----~~~~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~~~~~~l~a 79 (293)
T COG2962 5 SRKGILLALLAYLLWGLLPLYFKLLE-----PLPATEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKTLLMLALTA 79 (293)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHc-----cCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHHHHHHHHHH
Confidence 34699999999999999888877663 4699999999999888877655544432211 11111111123344444
Q ss_pred HHHHHHHHHHHHHHhhcchhHHHHHhhhhhHHHhhhhHhccCCcccchhhHHHHHHHHHHHHHhhhcc
Q 019698 241 LCTFALNLSVFLVISHTSALTIRVAGVVKDWVVVLFSALLFADTKLTIINLFGYGIAIAGVAAYNNHK 308 (337)
Q Consensus 241 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~t~~~~~G~~li~~gv~l~~~~~ 308 (337)
+.-..-.....|+...-...++|.=.+++|++.++.|.++++|+ ++..|++...+..+||..-.+..
T Consensus 80 ~li~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkEr-ls~~Q~iAV~lA~~GV~~~~~~~ 146 (293)
T COG2962 80 LLIGLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKER-LSRLQWIAVGLAAAGVLIQTWLL 146 (293)
T ss_pred HHHHHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHHHHHHHHc
Confidence 43333333455888888999999999999999999999999999 99999999999999998765443
No 61
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=97.95 E-value=0.00027 Score=63.47 Aligned_cols=131 Identities=16% Similarity=0.114 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHHhhhcCCCCChHHHHHHHhHHHHHHHHHHHHhhcccccccccccCccchHHHHHHHHHHHHHHHHHHHH
Q 019698 175 GEALRLIFMEILVKRKGLKLNPISVMYYVSPCSALCLFIPWIFLEKPKMDALETWHFPPLMLTLNCLCTFALNLSVFLVI 254 (337)
Q Consensus 175 ~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 254 (337)
++..+.+.+|++.++...+..+..+++.+.....+...+.......... . ..++.-....+++..+.....+.++
T Consensus 11 ~~~~~g~~qE~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~al 85 (303)
T PF08449_consen 11 GCCSYGILQEKIMTTPYGSPFPLFLTFVQFAFNALFSFILLSLFKFPKS-R----KIPLKKYAILSFLFFLASVLSNAAL 85 (303)
T ss_pred HHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHhccccCC-C----cChHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445678889988865433246677777766666555444333331111 1 1122222333455666666678889
Q ss_pred hhcchhHHHHHhhhhhHHHhhhhHhccCCcccchhhHHHHHHHHHHHHHhhhcccch
Q 019698 255 SHTSALTIRVAGVVKDWVVVLFSALLFADTKLTIINLFGYGIAIAGVAAYNNHKLKK 311 (337)
Q Consensus 255 ~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~t~~~~~G~~li~~gv~l~~~~~~~~ 311 (337)
++++-.+..+....+|+...+++.++++++ .+..++.+.+++..|+.+....+.++
T Consensus 86 ~~i~~p~~~~~ks~~~i~vmi~~~l~~~k~-y~~~~~~~v~li~~Gv~~~~~~~~~~ 141 (303)
T PF08449_consen 86 KYISYPTQIVFKSSKPIPVMILGVLILGKR-YSRRQYLSVLLITIGVAIFTLSDSSS 141 (303)
T ss_pred HhCChHHHHHHhhhHHHHHHHHHHHhcCcc-ccHHHHHHHHHHHhhHheeeeccccc
Confidence 999999999999999999999999999999 99999999999999999987765433
No 62
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=97.92 E-value=0.00059 Score=51.39 Aligned_cols=58 Identities=14% Similarity=0.107 Sum_probs=52.0
Q ss_pred HHHHHHHHhhcchhHHHHHhhhhhHHHhhhhHhccCCcccchhhHHHHHHHHHHHHHhh
Q 019698 247 NLSVFLVISHTSALTIRVAGVVKDWVVVLFSALLFADTKLTIINLFGYGIAIAGVAAYN 305 (337)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~t~~~~~G~~li~~gv~l~~ 305 (337)
.+.+.+.+++.+...+.....+.++.+.+.|+++|||+ +|+.+++|.++++.|+.+..
T Consensus 51 ~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~-ls~~~~~Gi~lii~Gv~~i~ 108 (111)
T PRK15051 51 MVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEP-VSPRHWCGVAFIIGGIVILG 108 (111)
T ss_pred HHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHHHHHh
Confidence 44456778999999998888899999999999999999 99999999999999988754
No 63
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=97.85 E-value=0.00021 Score=63.74 Aligned_cols=131 Identities=13% Similarity=-0.007 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChHHHHHHHhHHHHHHHHHHHHhhcccccccccccCccchHHHHHHHHHH
Q 019698 165 GVVYQMGGVVGEALRLIFMEILVKRKGLKLNPISVMYYVSPCSALCLFIPWIFLEKPKMDALETWHFPPLMLTLNCLCTF 244 (337)
Q Consensus 165 G~i~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 244 (337)
|++++++++++|+...+..|+.. +.++.+... ..++.++..........+.. .. ...+..-+.+|+.-.
T Consensus 2 ~~l~~lia~~~wGs~g~~~k~~~-----g~~~~~~~~--~~~g~l~~~~~~~~~~~~~~---~~-~~~~~~g~l~G~~w~ 70 (290)
T TIGR00776 2 DILIALIPALFWGSFVLINVKIG-----GGPYSQTLG--TTFGALILSIAIAIFVLPEF---WA-LSIFLVGLLSGAFWA 70 (290)
T ss_pred chHHHHHHHHHHhhhHHHHhccC-----CCHHHHHHH--HHHHHHHHHHHHHHHhCCcc---cc-cHHHHHHHHHHHHHH
Confidence 57889999999999999999864 234545442 33334333333222222211 00 111122444555555
Q ss_pred HHHHHHHHHHhhcchhHHHHHhh-hhhHHHhhhhHhccCCcccchhh----HHHHHHHHHHHHHhhhc
Q 019698 245 ALNLSVFLVISHTSALTIRVAGV-VKDWVVVLFSALLFADTKLTIIN----LFGYGIAIAGVAAYNNH 307 (337)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~-~~pv~~~i~~~~~~~e~~~t~~~----~~G~~li~~gv~l~~~~ 307 (337)
..|+.++.++++++....-...+ +.++...+++.+++||. .+..+ ++|.++++.|+.+....
T Consensus 71 ig~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~-~t~~~~~~~~~g~~l~l~G~~l~~~~ 137 (290)
T TIGR00776 71 LGQINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEW-STSIQTLLGLLALILIIIGVYLTSRS 137 (290)
T ss_pred hhhhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhc-cchHHHHHHHHHHHHHHHhHheEEec
Confidence 66788889999998888866666 88889999999999999 99999 99999999998887554
No 64
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=97.77 E-value=0.0017 Score=57.46 Aligned_cols=141 Identities=21% Similarity=0.124 Sum_probs=97.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChHHHHHHHhHHHHHHHHHHHHhhccc-ccccccccCccchHHHHHH
Q 019698 162 NWIGVVYQMGGVVGEALRLIFMEILVKRKGLKLNPISVMYYVSPCSALCLFIPWIFLEKP-KMDALETWHFPPLMLTLNC 240 (337)
Q Consensus 162 ~~~G~i~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 240 (337)
...+....+..++.++......|+..++ ..+......+......+...+. ...+.. ...... ...+..+..+
T Consensus 5 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~ 77 (292)
T COG0697 5 LLLGLLALLLWGLLWGLSFIALKLAVES---LDPFLFAAALRFLIAALLLLPL-LLLEPRGLRPALR---PWLLLLLLAL 77 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc---cCChHHHHHHHHHHHHHHHHHH-HHhhccccccccc---chHHHHHHHH
Confidence 3567788888889999988888887663 2355555554554444442111 111111 111111 1123455555
Q ss_pred HHHHHHHHHHHHHHhhcchhHHHHHhhhhhHHHhhhhH-hccCCcccchhhHHHHHHHHHHHHHhhhcccc
Q 019698 241 LCTFALNLSVFLVISHTSALTIRVAGVVKDWVVVLFSA-LLFADTKLTIINLFGYGIAIAGVAAYNNHKLK 310 (337)
Q Consensus 241 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~i~~~-~~~~e~~~t~~~~~G~~li~~gv~l~~~~~~~ 310 (337)
+.....+..++..++++++.......+..|++..+++. ++++|+ ++..++.|..+.+.|+.+.......
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~-~~~~~~~~~~~~~~Gv~lv~~~~~~ 147 (292)
T COG0697 78 LGLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGER-LSLLQILGILLALAGVLLILLGGGG 147 (292)
T ss_pred HHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCC-CcHHHHHHHHHHHHhHHheecCCCc
Confidence 55566666777889999999999999999999999996 777999 9999999999999999988765544
No 65
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=97.73 E-value=0.00014 Score=56.21 Aligned_cols=71 Identities=20% Similarity=0.135 Sum_probs=62.0
Q ss_pred hHHHHHHHHHHHHhhhhhhhcccHhHHHHHHHHHHHHHHHHHHH--hcccccchhhHHHHHHHhhhheeeeec
Q 019698 87 VIPIGAMFAMTLWLGNTAYLYISVAFAQMLKAIMPVAVFILGVA--AGLEVMSCRMLLIMSVISFGVVVASYG 157 (337)
Q Consensus 87 ~~~~~~~~~~~~~~~~~al~~~~~~~~~ii~~~~Pv~~~l~~~~--~~~er~~~~~~~~i~l~~~G~~l~~~~ 157 (337)
....-.+++....+++.+++..|++.+..+.+..++++.+.++. ++||+++..+++|+.++++|+.+....
T Consensus 51 i~lgl~~~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~ 123 (129)
T PRK02971 51 VLLGLAGYALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLP 123 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccC
Confidence 33344558999999999999999999999999999888888885 899999999999999999999987653
No 66
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=97.72 E-value=0.0011 Score=59.83 Aligned_cols=142 Identities=18% Similarity=0.159 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChHHHHHHHhHHHHHHHHHHHHhhcccccccccccCccchHHHHHHHH
Q 019698 163 WIGVVYQMGGVVGEALRLIFMEILVKRKGLKLNPISVMYYVSPCSALCLFIPWIFLEKPKMDALETWHFPPLMLTLNCLC 242 (337)
Q Consensus 163 ~~G~i~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 242 (337)
+.+.+++-.-+++-+..++....+.++ +.+.+..+.... ....+++..+....-...... .......+|--+.-+++
T Consensus 12 ~~~~~lgQ~lsl~~~~t~~~s~~l~~~-~~~~P~~Qs~~~-Y~~l~~vy~~~~~~r~~~~~~-~~~~~~~~w~y~lla~~ 88 (334)
T PF06027_consen 12 WIVLLLGQVLSLCITGTGTFSSLLANK-GVNIPTFQSFFN-YVLLALVYTPILLYRRGFKKW-LKVLKRPWWKYFLLALL 88 (334)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhc-CccCcHHHHHHH-HHHHHHHHhhhhhhccccccc-hhhcchhHHHHHHHHHH
Confidence 345555666666666666667766664 334444444333 322233322322221111110 01112222333333677
Q ss_pred HHHHHHHHHHHHhhcchhHHHHHhhhhhHHHhhhhHhccCCcccchhhHHHHHHHHHHHHHhhhcc
Q 019698 243 TFALNLSVFLVISHTSALTIRVAGVVKDWVVVLFSALLFADTKLTIINLFGYGIAIAGVAAYNNHK 308 (337)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~t~~~~~G~~li~~gv~l~~~~~ 308 (337)
=...|+....+.++++.+...+......+++.++|+++++++ +++.+++|..+++.|+.+.....
T Consensus 89 Dv~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~r-y~~~~~~gv~i~i~Gv~lv~~sD 153 (334)
T PF06027_consen 89 DVEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRR-YSWFHILGVLICIAGVVLVVVSD 153 (334)
T ss_pred HHHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhh-hhHHHHHHHHHHHhhhhheeeec
Confidence 778888899999999999999999999999999999999999 99999999999999988766553
No 67
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.71 E-value=0.00033 Score=61.29 Aligned_cols=66 Identities=14% Similarity=0.026 Sum_probs=61.2
Q ss_pred HHHHHHHHHhhhhhhhcccHhHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHhhhheeeee
Q 019698 91 GAMFAMTLWLGNTAYLYISVAFAQMLKAIMPVAVFILGVAAGLEVMSCRMLLIMSVISFGVVVASY 156 (337)
Q Consensus 91 ~~~~~~~~~~~~~al~~~~~~~~~ii~~~~Pv~~~l~~~~~~~er~~~~~~~~i~l~~~G~~l~~~ 156 (337)
-+.+..+-...+.|+.+-|++..+.+.+++.+..++++..++|||+++...+|..++++|..+++.
T Consensus 71 ~ltm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~ 136 (335)
T KOG2922|consen 71 MLTMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVI 136 (335)
T ss_pred HHHHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEE
Confidence 334888888999999999999999999999999999999999999999999999999999888776
No 68
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=97.69 E-value=0.0037 Score=49.05 Aligned_cols=131 Identities=18% Similarity=0.207 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCCCChHHHHHHHhHHHHHHHHHHHHhhcccccccccccCccchHHHHHHHHHHH
Q 019698 166 VVYQMGGVVGEALRLIFMEILVKRKGLKLNPISVMYYVSPCSALCLFIPWIFLEKPKMDALETWHFPPLMLTLNCLCTFA 245 (337)
Q Consensus 166 ~i~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 245 (337)
.++++.+++.-+++..+..++.++.+ +|..........+.+.+.......+..... ...+.++|. ..+|+++..
T Consensus 3 ~lla~~aG~~i~~q~~~N~~L~~~~g---s~~~as~i~~~~G~i~~~i~~~~~~~~~~~--~~~~~p~w~-~lGG~lG~~ 76 (138)
T PF04657_consen 3 ILLALLAGALIALQAAFNGQLGKALG---SPLVASFISFGVGFILLLIILLITGRPSLA--SLSSVPWWA-YLGGLLGVF 76 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC---ccHHHHHHHHHHHHHHHHHHHHHhcccccc--hhccCChHH-hccHHHHHH
Confidence 57788899999999999999988543 589999988888888887776666554221 112333344 347888888
Q ss_pred HHHHHHHHHhhcchhHHHHHhhhhhH-HHhhhhHh----ccCCcccchhhHHHHHHHHHHHHH
Q 019698 246 LNLSVFLVISHTSALTIRVAGVVKDW-VVVLFSAL----LFADTKLTIINLFGYGIAIAGVAA 303 (337)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~pv-~~~i~~~~----~~~e~~~t~~~~~G~~li~~gv~l 303 (337)
.-.+....+++.++..........-+ .+.+++.+ .-+++ +++..++|..+++.|+.+
T Consensus 77 ~V~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~-~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 77 FVLSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRP-FSLRRILGLALMIAGVIL 138 (138)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCC-CCHHHHHHHHHHHHHHhC
Confidence 77777788899888877766555444 44555553 23355 899999999999999863
No 69
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=97.49 E-value=0.00045 Score=52.46 Aligned_cols=70 Identities=17% Similarity=0.108 Sum_probs=61.6
Q ss_pred hHHHHHHHHHHHHhhhhhhhcccHhHHHHHH-HHHHHHHHHHHHHhcccccchhhHHHHHHHhhhheeeee
Q 019698 87 VIPIGAMFAMTLWLGNTAYLYISVAFAQMLK-AIMPVAVFILGVAAGLEVMSCRMLLIMSVISFGVVVASY 156 (337)
Q Consensus 87 ~~~~~~~~~~~~~~~~~al~~~~~~~~~ii~-~~~Pv~~~l~~~~~~~er~~~~~~~~i~l~~~G~~l~~~ 156 (337)
......+++....+...+++++|.+.+..+- ....+.+.+.+++++||+++..+++++.++++|++..-.
T Consensus 33 ~~~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l 103 (120)
T PRK10452 33 FILMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKS 103 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhc
Confidence 3445666888999999999999999988885 688999999999999999999999999999999987654
No 70
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=97.42 E-value=0.00091 Score=50.11 Aligned_cols=68 Identities=18% Similarity=0.207 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHhhhhhhhcccHhHHHHHH-HHHHHHHHHHHHHhcccccchhhHHHHHHHhhhheeeee
Q 019698 89 PIGAMFAMTLWLGNTAYLYISVAFAQMLK-AIMPVAVFILGVAAGLEVMSCRMLLIMSVISFGVVVASY 156 (337)
Q Consensus 89 ~~~~~~~~~~~~~~~al~~~~~~~~~ii~-~~~Pv~~~l~~~~~~~er~~~~~~~~i~l~~~G~~l~~~ 156 (337)
....+|.....+...+++.+|.+.+..+- ....+.+.+.+++++||++++.+++++.+.++|++....
T Consensus 35 ~~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l 103 (110)
T PRK09541 35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINL 103 (110)
T ss_pred HHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 34555888888889999999999988885 578899999999999999999999999999999987644
No 71
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=97.39 E-value=0.0012 Score=50.23 Aligned_cols=59 Identities=17% Similarity=0.297 Sum_probs=46.3
Q ss_pred HHHHHHhhcchhH-HHHHhhhhhHHHhhhhHhccCCcccchhhHHHHHHHHHHHHHhhhcc
Q 019698 249 SVFLVISHTSALT-IRVAGVVKDWVVVLFSALLFADTKLTIINLFGYGIAIAGVAAYNNHK 308 (337)
Q Consensus 249 ~~~~~~~~~~~~~-~~~~~~~~pv~~~i~~~~~~~e~~~t~~~~~G~~li~~gv~l~~~~~ 308 (337)
...+.+|+.+-.. .++..-+..+..+++++++|||+ +|+.+++|+.+++.|+...+...
T Consensus 46 ~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~-~s~~~~~gi~lIi~GVi~l~l~~ 105 (120)
T PRK10452 46 FLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDES-LSLMKIAGLTTLVAGIVLIKSGT 105 (120)
T ss_pred HHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHHHHhhcCC
Confidence 3445666665443 34445678888999999999999 99999999999999998876543
No 72
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=97.30 E-value=0.0031 Score=47.08 Aligned_cols=68 Identities=15% Similarity=-0.034 Sum_probs=57.7
Q ss_pred hHHHHHHHHHHHHhhhhhhhcccHhHHHHHH-HHHHHHHHHHHHHhcccccchhhHHHHHHHhhhheee
Q 019698 87 VIPIGAMFAMTLWLGNTAYLYISVAFAQMLK-AIMPVAVFILGVAAGLEVMSCRMLLIMSVISFGVVVA 154 (337)
Q Consensus 87 ~~~~~~~~~~~~~~~~~al~~~~~~~~~ii~-~~~Pv~~~l~~~~~~~er~~~~~~~~i~l~~~G~~l~ 154 (337)
......++.....+...+++++|.+.+..+- ....+.+.+.+++++||++++.+++++.+.+.|++..
T Consensus 38 ~~~~~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~l 106 (109)
T PRK10650 38 GILSLAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMI 106 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh
Confidence 3344555778888889999999999877665 5778899999999999999999999999999998764
No 73
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.25 E-value=0.022 Score=44.80 Aligned_cols=139 Identities=13% Similarity=0.064 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChHHHHHHHhHHHHHHHHHHHHhhcccccccccccCccchHHHHHHHH
Q 019698 163 WIGVVYQMGGVVGEALRLIFMEILVKRKGLKLNPISVMYYVSPCSALCLFIPWIFLEKPKMDALETWHFPPLMLTLNCLC 242 (337)
Q Consensus 163 ~~G~i~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 242 (337)
+...+..+.++++-..+..+..++.|..+ +|..-.......+.+.+.......+...... ...+.++|..+. |++
T Consensus 4 ~l~ll~~i~aG~~l~~Q~~iN~qL~~~~~---spl~As~isf~vGt~~L~~l~l~~~~~~~~a-~~~~~pwW~~~G-G~l 78 (150)
T COG3238 4 YLYLLFAILAGALLPLQAAINGRLARYLG---SPLLASLISFLVGTVLLLILLLIKQGHPGLA-AVASAPWWAWIG-GLL 78 (150)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHcC---ChHHHHHHHHHHHHHHHHHHHHHhcCCCchh-hccCCchHHHHc-cch
Confidence 45678889999999999999999987543 6777777777777777766655544433322 223344454444 466
Q ss_pred HHHHHHHHHHHHhhcchhHH-HHHhhhhhHHHhhhhHhccC---CcccchhhHHHHHHHHHHHHHhhh
Q 019698 243 TFALNLSVFLVISHTSALTI-RVAGVVKDWVVVLFSALLFA---DTKLTIINLFGYGIAIAGVAAYNN 306 (337)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~pv~~~i~~~~~~~---e~~~t~~~~~G~~li~~gv~l~~~ 306 (337)
+..+-........+.++++. ...-.-+-+.+.+++.+=+. +++++...++|.++++.|+++...
T Consensus 79 Ga~~vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~~~ 146 (150)
T COG3238 79 GAIFVTSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLARR 146 (150)
T ss_pred hhhhhhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHhcc
Confidence 66655455555666655544 44444455555665533222 234899999999999999665544
No 74
>PRK11431 multidrug efflux system protein; Provisional
Probab=97.25 E-value=0.0026 Score=47.20 Aligned_cols=68 Identities=22% Similarity=0.114 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHhhhhhhhcccHhHHHHHH-HHHHHHHHHHHHHhcccccchhhHHHHHHHhhhheeee
Q 019698 88 IPIGAMFAMTLWLGNTAYLYISVAFAQMLK-AIMPVAVFILGVAAGLEVMSCRMLLIMSVISFGVVVAS 155 (337)
Q Consensus 88 ~~~~~~~~~~~~~~~~al~~~~~~~~~ii~-~~~Pv~~~l~~~~~~~er~~~~~~~~i~l~~~G~~l~~ 155 (337)
.....++.....+...+++.+|.+.+..+- ....+.+.+.+++++||++++.+++++.+.+.|++..-
T Consensus 33 ~~~i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~ 101 (105)
T PRK11431 33 IITVTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLK 101 (105)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhh
Confidence 334555888888889999999999877666 57889999999999999999999999999999988753
No 75
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=97.23 E-value=0.0074 Score=51.21 Aligned_cols=129 Identities=10% Similarity=-0.014 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhhcccccCCChhhhhhHhHHHHHH-HH
Q 019698 17 AYILLYIALSSGQIFFNKWVLSSKEINFPFPLGLTLLHMVFSSVLCFLLTKVFKVMKVEDGMTLEIYTTSVIPIGAM-FA 95 (337)
Q Consensus 17 ~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~p~~~~~~r~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 95 (337)
.+...-+.++..+++..|..-. .-+ .-.=+..-+.++.++.+++-.-. ..+.-++++.. ...+..+++ ..
T Consensus 151 ~~Al~AG~~Wa~YIv~G~r~g~----~~~-g~~g~a~gm~vAaviv~Pig~~~---ag~~l~~p~ll-~laLgvavlSSa 221 (292)
T COG5006 151 ALALGAGACWALYIVLGQRAGR----AEH-GTAGVAVGMLVAALIVLPIGAAQ---AGPALFSPSLL-PLALGVAVLSSA 221 (292)
T ss_pred HHHHHHhHHHHHHHHHcchhcc----cCC-CchHHHHHHHHHHHHHhhhhhhh---cchhhcChHHH-HHHHHHHHHhcc
Confidence 3344445555555555554432 222 22334455666777767664311 11222223322 234444444 56
Q ss_pred HHHHhhhhhhhcccHhHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHhhhheee
Q 019698 96 MTLWLGNTAYLYISVAFAQMLKAIMPVAVFILGVAAGLEVMSCRMLLIMSVISFGVVVA 154 (337)
Q Consensus 96 ~~~~~~~~al~~~~~~~~~ii~~~~Pv~~~l~~~~~~~er~~~~~~~~i~l~~~G~~l~ 154 (337)
+.+.+-..+++..|..++.++.++.|.+.++.++++++|+++..||+++...+.+.+-.
T Consensus 222 lPYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG~ 280 (292)
T COG5006 222 LPYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASAGS 280 (292)
T ss_pred cchHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcc
Confidence 66777778899999999999999999999999999999999999999999887776543
No 76
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=97.21 E-value=0.0021 Score=47.27 Aligned_cols=69 Identities=23% Similarity=0.168 Sum_probs=58.2
Q ss_pred hHHHHHHHHHHHHhhhhhhhcccHhHHHHHH-HHHHHHHHHHHHHhcccccchhhHHHHHHHhhhheeee
Q 019698 87 VIPIGAMFAMTLWLGNTAYLYISVAFAQMLK-AIMPVAVFILGVAAGLEVMSCRMLLIMSVISFGVVVAS 155 (337)
Q Consensus 87 ~~~~~~~~~~~~~~~~~al~~~~~~~~~ii~-~~~Pv~~~l~~~~~~~er~~~~~~~~i~l~~~G~~l~~ 155 (337)
.+..-.++.....+...+++++|.+++..+- ..-.+.+.+.+++++||+++..+++++.+.+.|++..-
T Consensus 33 ~il~~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk 102 (106)
T COG2076 33 SILTIVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLK 102 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhh
Confidence 3444555778888889999999999876655 67788999999999999999999999999999987653
No 77
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=97.18 E-value=0.013 Score=43.72 Aligned_cols=55 Identities=13% Similarity=0.129 Sum_probs=45.2
Q ss_pred HHHHHhhcch-hHHHHHhhhhhHHHhhhhHhccCCcccchhhHHHHHHHHHHHHHhh
Q 019698 250 VFLVISHTSA-LTIRVAGVVKDWVVVLFSALLFADTKLTIINLFGYGIAIAGVAAYN 305 (337)
Q Consensus 250 ~~~~~~~~~~-~~~~~~~~~~pv~~~i~~~~~~~e~~~t~~~~~G~~li~~gv~l~~ 305 (337)
....+|+.+- ...++..-+..+..++.++++|+|+ +|+.+++|+.+++.|+...+
T Consensus 52 Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~-~~~~~~~gi~lIi~GVi~lk 107 (109)
T PRK10650 52 LSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQR-LNRKGWIGLVLLLAGMVMIK 107 (109)
T ss_pred HHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHHHHhc
Confidence 3455666543 4456777788899999999999999 99999999999999998754
No 78
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=97.12 E-value=0.0036 Score=46.87 Aligned_cols=57 Identities=18% Similarity=0.128 Sum_probs=45.5
Q ss_pred HHHHHhhcchhH-HHHHhhhhhHHHhhhhHhccCCcccchhhHHHHHHHHHHHHHhhhc
Q 019698 250 VFLVISHTSALT-IRVAGVVKDWVVVLFSALLFADTKLTIINLFGYGIAIAGVAAYNNH 307 (337)
Q Consensus 250 ~~~~~~~~~~~~-~~~~~~~~pv~~~i~~~~~~~e~~~t~~~~~G~~li~~gv~l~~~~ 307 (337)
...++++.+-.. .++..-+..+..++.++++|||+ +|+.+++|+.+++.|+...+..
T Consensus 47 l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~-~~~~~~~gi~lIi~GVi~l~l~ 104 (110)
T PRK09541 47 LAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQR-LDLPAIIGMMLICAGVLVINLL 104 (110)
T ss_pred HHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHHHHHhcC
Confidence 445566665433 34456678888899999999999 9999999999999999987654
No 79
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=97.10 E-value=0.002 Score=55.82 Aligned_cols=76 Identities=24% Similarity=0.208 Sum_probs=67.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhhhhHHHhhhhHhccCCcccchhhHHHHHHHHHHHHHhhhcccc
Q 019698 234 LMLTLNCLCTFALNLSVFLVISHTSALTIRVAGVVKDWVVVLFSALLFADTKLTIINLFGYGIAIAGVAAYNNHKLK 310 (337)
Q Consensus 234 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~t~~~~~G~~li~~gv~l~~~~~~~ 310 (337)
+.....+++....|...+..+++.+|.+..+....+.+.+.++++++++.+ ++..||.+..+...|+.+.......
T Consensus 18 ~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~-ls~~qW~aL~lL~~Gv~lv~~~~~~ 93 (244)
T PF04142_consen 18 LKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRR-LSRRQWLALFLLVAGVVLVQLSSSQ 93 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcc-cchhhHHHHHHHHHHHheeecCCcc
Confidence 445667777777888888999999999999999999999999999999999 9999999999999999987765544
No 80
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=96.87 E-value=0.0077 Score=43.77 Aligned_cols=58 Identities=17% Similarity=0.135 Sum_probs=35.8
Q ss_pred HHHHHHHHHHhhhhhhhcccHhHHHHHH-HHHHHHHHHHHHHhcccccchhhHHHHHHH
Q 019698 90 IGAMFAMTLWLGNTAYLYISVAFAQMLK-AIMPVAVFILGVAAGLEVMSCRMLLIMSVI 147 (337)
Q Consensus 90 ~~~~~~~~~~~~~~al~~~~~~~~~ii~-~~~Pv~~~l~~~~~~~er~~~~~~~~i~l~ 147 (337)
...+|+....+...+++++|.+.+..+- ....+.+.+.+.+++||+++..++.++.+.
T Consensus 35 ~~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI 93 (93)
T PF00893_consen 35 AVVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI 93 (93)
T ss_dssp HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence 3446888889999999999999986654 689999999999999999999999998763
No 81
>PRK13499 rhamnose-proton symporter; Provisional
Probab=96.82 E-value=0.011 Score=53.47 Aligned_cols=142 Identities=14% Similarity=0.028 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChHHHHHHHhHHHHHHHHHH--HHhhcccccccccccCc-cchHHHHH
Q 019698 163 WIGVVYQMGGVVGEALRLIFMEILVKRKGLKLNPISVMYYVSPCSALCLFIP--WIFLEKPKMDALETWHF-PPLMLTLN 239 (337)
Q Consensus 163 ~~G~i~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~ 239 (337)
..|+++++++++|++.+.+-.|| .|+ -++|..+-...+-..++.|. ..+.++.......+... .+...+.+
T Consensus 6 ~~G~~~~~i~~~~~GS~~~p~K~-~k~-----w~wE~~W~v~gi~~wl~~~~~~g~~~~~~f~~~~~~~~~~~~~~~~l~ 79 (345)
T PRK13499 6 ILGIIWHLIGGASSGSFYAPFKK-VKK-----WSWETMWSVGGIFSWLILPWLIAALLLPDFWAYYSSFSGSTLLPVFLF 79 (345)
T ss_pred HHHHHHHHHHHHHhhcccccccc-cCC-----CchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhcCHHHHHHHHHH
Confidence 57999999999999999999988 341 44555533221111122221 12223222222221221 12344555
Q ss_pred HHHHHHHHHHHHHHHhhcchh-HHHHHhhhhhHHHhhhhHhccCCcc------cchhhHHHHHHHHHHHHHhhhcccc
Q 019698 240 CLCTFALNLSVFLVISHTSAL-TIRVAGVVKDWVVVLFSALLFADTK------LTIINLFGYGIAIAGVAAYNNHKLK 310 (337)
Q Consensus 240 ~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~pv~~~i~~~~~~~e~~------~t~~~~~G~~li~~gv~l~~~~~~~ 310 (337)
|++-...|...+..+++.+-+ ...+..-++-+.+++++.+++||=+ -.....+|.+++++|+.+..+...+
T Consensus 80 G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~Ag~~ 157 (345)
T PRK13499 80 GALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGRAGQL 157 (345)
T ss_pred HHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 666666677777777776543 3455556778888999999998630 1245788999999999998874433
No 82
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=96.73 E-value=0.031 Score=48.70 Aligned_cols=66 Identities=17% Similarity=0.065 Sum_probs=56.0
Q ss_pred HhHHHHHHHHHHHHhhhhhhhcccHhHHHHHHHHHHHHHHHHHHHhcccccchhhHH----HHHHHhhhh
Q 019698 86 SVIPIGAMFAMTLWLGNTAYLYISVAFAQMLKAIMPVAVFILGVAAGLEVMSCRMLL----IMSVISFGV 151 (337)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~al~~~~~~~~~ii~~~~Pv~~~l~~~~~~~er~~~~~~~----~i~l~~~G~ 151 (337)
+-...|+++...+.+...+.+....+.+-.+..+.++...+-+.+++||+-+++++. |+++.+.|.
T Consensus 197 ~nil~G~~w~ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~~G~~Liv~G~ 266 (269)
T PF06800_consen 197 KNILTGLIWGIGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIYTLIGLILIVIGA 266 (269)
T ss_pred HhhHHHHHHHHHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhHHHHHHHHHHHHHhh
Confidence 556678889999999999999999999999999999999999999999998887665 444444444
No 83
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=96.67 E-value=0.018 Score=42.33 Aligned_cols=57 Identities=21% Similarity=0.333 Sum_probs=47.1
Q ss_pred HHHHHhhcch-hHHHHHhhhhhHHHhhhhHhccCCcccchhhHHHHHHHHHHHHHhhhc
Q 019698 250 VFLVISHTSA-LTIRVAGVVKDWVVVLFSALLFADTKLTIINLFGYGIAIAGVAAYNNH 307 (337)
Q Consensus 250 ~~~~~~~~~~-~~~~~~~~~~pv~~~i~~~~~~~e~~~t~~~~~G~~li~~gv~l~~~~ 307 (337)
..+.+|+.+- +..++..-...+...+.++++|+|+ +++.+++|+.+++.|+...+..
T Consensus 47 Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~-l~~~~~~gl~LiiaGvi~Lk~~ 104 (106)
T COG2076 47 LSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGES-LSLIKLLGLALILAGVIGLKLG 104 (106)
T ss_pred HHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCc-CCHHHHHHHHHHHHHHHHhhhc
Confidence 3455666543 4467788888999999999999999 9999999999999999887654
No 84
>PRK11431 multidrug efflux system protein; Provisional
Probab=96.64 E-value=0.02 Score=42.44 Aligned_cols=56 Identities=9% Similarity=0.132 Sum_probs=46.2
Q ss_pred HHHHHhhcc-hhHHHHHhhhhhHHHhhhhHhccCCcccchhhHHHHHHHHHHHHHhhh
Q 019698 250 VFLVISHTS-ALTIRVAGVVKDWVVVLFSALLFADTKLTIINLFGYGIAIAGVAAYNN 306 (337)
Q Consensus 250 ~~~~~~~~~-~~~~~~~~~~~pv~~~i~~~~~~~e~~~t~~~~~G~~li~~gv~l~~~ 306 (337)
....+|+.+ ....++..-+..+..++.++++|+|+ +|+.+++|+.+++.|+...+.
T Consensus 46 Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~-~~~~~~~gi~lIi~GVv~l~l 102 (105)
T PRK11431 46 LAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGES-ASPARLLSLALIVAGIIGLKL 102 (105)
T ss_pred HHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHHHhhhc
Confidence 345566654 34567777888999999999999999 999999999999999988654
No 85
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=96.57 E-value=0.13 Score=40.39 Aligned_cols=129 Identities=16% Similarity=0.081 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhhcccccCCChhhhhhHhHHHHHHHHHH
Q 019698 18 YILLYIALSSGQIFFNKWVLSSKEINFPFPLGLTLLHMVFSSVLCFLLTKVFKVMKVEDGMTLEIYTTSVIPIGAMFAMT 97 (337)
Q Consensus 18 ~~~~~~~~~~~~~~~~k~~~~~~~~~~~~p~~~~~~r~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (337)
..+.-+.....+..+|-.+-+ ....|+.-++.-+..+.+.+..+....++.+ .++. ++..+ .....|++-...
T Consensus 5 la~~aG~~i~~q~~~N~~L~~----~~gs~~~as~i~~~~G~i~~~i~~~~~~~~~-~~~~-~~~p~-w~~lGG~lG~~~ 77 (138)
T PF04657_consen 5 LALLAGALIALQAAFNGQLGK----ALGSPLVASFISFGVGFILLLIILLITGRPS-LASL-SSVPW-WAYLGGLLGVFF 77 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HhCccHHHHHHHHHHHHHHHHHHHHHhcccc-cchh-ccCCh-HHhccHHHHHHH
Confidence 334444554555555554444 2334999999999988888877766555432 1111 12222 344467777777
Q ss_pred HHhhhhhhhcccHhHHHHHHH-HHHHHHHHHHHH----hcccccchhhHHHHHHHhhhhee
Q 019698 98 LWLGNTAYLYISVAFAQMLKA-IMPVAVFILGVA----AGLEVMSCRMLLIMSVISFGVVV 153 (337)
Q Consensus 98 ~~~~~~al~~~~~~~~~ii~~-~~Pv~~~l~~~~----~~~er~~~~~~~~i~l~~~G~~l 153 (337)
..+.......++++....+.- -+-+...++..+ ..|++++..+.+|+++.+.|+.+
T Consensus 78 V~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 78 VLSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 777888888898888777664 455566777775 46678999999999999999753
No 86
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=96.56 E-value=0.0083 Score=51.83 Aligned_cols=133 Identities=13% Similarity=0.058 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChHHHHHHHhHHHHHHHHHHHHhhcccccccccccCccchHHHHHHHHHH
Q 019698 165 GVVYQMGGVVGEALRLIFMEILVKRKGLKLNPISVMYYVSPCSALCLFIPWIFLEKPKMDALETWHFPPLMLTLNCLCTF 244 (337)
Q Consensus 165 G~i~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 244 (337)
|++.+++|+++++...+=.||.-. -|+.-..+++.....+.........+.+.+ . ...+++|.+-.
T Consensus 1 G~~a~~va~~~fGs~~vPvK~~~~-----gDg~~fQw~~~~~i~~~g~~v~~~~~~p~f---~------p~amlgG~lW~ 66 (254)
T PF07857_consen 1 GYIACIVAVLFFGSNFVPVKKFDT-----GDGFFFQWVMCSGIFLVGLVVNLILGFPPF---Y------PWAMLGGALWA 66 (254)
T ss_pred CchhHHHHHHHhcccceeeEeccC-----CCcHHHHHHHHHHHHHHHHHHHHhcCCCcc---e------eHHHhhhhhhh
Confidence 567889999999998888887632 367666666655444444333333333222 1 22344444444
Q ss_pred HHHHHHHHHHhhcc-hhHHHHHhhhhhHHHhhhhHh-ccCCc----ccchhhHHHHHHHHHHHHHhhhcccch
Q 019698 245 ALNLSVFLVISHTS-ALTIRVAGVVKDWVVVLFSAL-LFADT----KLTIINLFGYGIAIAGVAAYNNHKLKK 311 (337)
Q Consensus 245 ~~~~~~~~~~~~~~-~~~~~~~~~~~pv~~~i~~~~-~~~e~----~~t~~~~~G~~li~~gv~l~~~~~~~~ 311 (337)
..|....-.++..+ +.-..+.+..+-+.+...|-+ +||++ .-.+..++|.+++++|..++...|.+.
T Consensus 67 ~gN~~~vpii~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~fik~~~ 139 (254)
T PF07857_consen 67 TGNILVVPIIKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIFSFIKSEE 139 (254)
T ss_pred cCceeehhHhhhhhhHHHHHHHHHHHHHHHHHHhhceeccccccccchhHHHHHHHHHHHHHHHheeeecCCC
Confidence 44444444455543 233445555566666666644 56543 235779999999999999887655443
No 87
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=96.51 E-value=0.00072 Score=57.59 Aligned_cols=135 Identities=13% Similarity=0.156 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChHHHHHHHhHHHHHHHHHHHHhhcccccccccccCccchHHHHHHHHH
Q 019698 164 IGVVYQMGGVVGEALRLIFMEILVKRKGLKLNPISVMYYVSPCSALCLFIPWIFLEKPKMDALETWHFPPLMLTLNCLCT 243 (337)
Q Consensus 164 ~G~i~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 243 (337)
.|.++.-++ ..+-...+..++.... +|.+....-.+.-.+...|..+....+.. ....-.. | +++=|+.+
T Consensus 38 ~gl~l~~vs-~ff~~~~vv~t~~~e~-----~p~e~a~~r~l~~mlit~pcliy~~~~v~-gp~g~R~--~-LiLRg~mG 107 (346)
T KOG4510|consen 38 LGLLLLTVS-YFFNSCMVVSTKVLEN-----DPMELASFRLLVRMLITYPCLIYYMQPVI-GPEGKRK--W-LILRGFMG 107 (346)
T ss_pred cCceehhhH-HHHhhHHHhhhhhhcc-----ChhHhhhhhhhhehhhhheEEEEEeeeee-cCCCcEE--E-EEeehhhh
Confidence 465555555 6666666666766542 44444443332222222222222221111 1111111 1 22223444
Q ss_pred HHHHHHHHHHHhhcchhHHHHHhhhhhHHHhhhhHhccCCcccchhhHHHHHHHHHHHHHhhhccc
Q 019698 244 FALNLSVFLVISHTSALTIRVAGVVKDWVVVLFSALLFADTKLTIINLFGYGIAIAGVAAYNNHKL 309 (337)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~t~~~~~G~~li~~gv~l~~~~~~ 309 (337)
+..-+..|++.++.+-.-+.......|+++.+++|++++|+ .|....+|..+.+.|+.+..+...
T Consensus 108 ~tgvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~-~t~~eaL~s~itl~GVVLIvRPpF 172 (346)
T KOG4510|consen 108 FTGVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEP-FTKFEALGSLITLLGVVLIVRPPF 172 (346)
T ss_pred hhHHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCC-CcHHHHHHHHHhhheEEEEecCCc
Confidence 44334456667777777888889999999999999999999 999999999999999998776554
No 88
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=96.50 E-value=0.0054 Score=54.77 Aligned_cols=139 Identities=9% Similarity=-0.003 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCCCCchHHHHHHHHHHHHHHHH-HHHHHhhhccc----ccCCChhhhhhHhHH
Q 019698 15 TYAYILLYIALSSGQIFFNKWVLSSKEINFPFPLGLTLLHMVFSSVLCF-LLTKVFKVMKV----EDGMTLEIYTTSVIP 89 (337)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~p~~~~~~r~~~a~~~l~-~~~~~~~~~~~----~~~~~~~~~~~~~~~ 89 (337)
....+..+........+..|.++.+++...+ ++.+..++--++...++ |+......... ....+.. .. .+..
T Consensus 164 G~i~a~~s~~~~al~~I~~~~ll~~~~~~~~-~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~~~-~~-~~~~ 240 (316)
T KOG1441|consen 164 GFISAMISNLAFALRNILSKKLLTSKGESLN-SMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWFVT-FL-ILLL 240 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccccC-chHHHHHhhhHHHHHHhcchHhhhcccceeeeeccccchh-hH-HHHH
Confidence 3445555566666777788888865555677 88888888888888877 66443221111 1111122 22 3333
Q ss_pred HHHHHHHHHHhhhhhhhcccHhHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHhhhheeeee
Q 019698 90 IGAMFAMTLWLGNTAYLYISVAFAQMLKAIMPVAVFILGVAAGLEVMSCRMLLIMSVISFGVVVASY 156 (337)
Q Consensus 90 ~~~~~~~~~~~~~~al~~~~~~~~~ii~~~~Pv~~~l~~~~~~~er~~~~~~~~i~l~~~G~~l~~~ 156 (337)
.+.++...+...+..+..+|+-++++.....-+.+...++++++++.++.+.+|..++++|+.+-..
T Consensus 241 ~sv~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~ 307 (316)
T KOG1441|consen 241 NSVLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYSR 307 (316)
T ss_pred HHHHHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHHH
Confidence 4466777778888899999999999999988888888898999999999999999999999887543
No 89
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=96.42 E-value=0.022 Score=50.96 Aligned_cols=118 Identities=14% Similarity=0.109 Sum_probs=78.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChHHHHHHHhHHHHHHHHHHHHhhcccccccccccCccchHHHHHHH
Q 019698 162 NWIGVVYQMGGVVGEALRLIFMEILVKRKGLKLNPISVMYYVSPCSALCLFIPWIFLEKPKMDALETWHFPPLMLTLNCL 241 (337)
Q Consensus 162 ~~~G~i~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 241 (337)
...|..+++.++++.+...+++|+-.++.+. .+..--. . +. .......| +.-+....
T Consensus 5 ~~iGv~lav~ss~~~~~g~~lqk~~~~r~~~--~~~~~~~--~--------~~-------~~l~~~~W----~~G~~~~~ 61 (300)
T PF05653_consen 5 FYIGVLLAVVSSIFIAVGFNLQKKSHLRLPR--GSLRAGS--G--------GR-------SYLRRPLW----WIGLLLMV 61 (300)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--ccccccc--h--------hh-------HHHhhHHH----HHHHHHHh
Confidence 4679999999999999999999997665431 1100000 0 00 00000111 21111112
Q ss_pred HHHHHHHHHHHHHhhcchhHHHHHhhhhhHHHhhhhHhccCCcccchhhHHHHHHHHHHHHHhhh
Q 019698 242 CTFALNLSVFLVISHTSALTIRVAGVVKDWVVVLFSALLFADTKLTIINLFGYGIAIAGVAAYNN 306 (337)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~t~~~~~G~~li~~gv~l~~~ 306 (337)
.+... .+.+....+++..+.++.+.-++..+++..+++|+ ++..++.|..+++.|..+.-.
T Consensus 62 ~g~~~---~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~-~~~~~~~G~~l~i~G~~liv~ 122 (300)
T PF05653_consen 62 LGEIL---NFVALGFAPASLVAPLGALSLVFNAVLARFFLGEK-LTRRDIVGCALIILGSVLIVI 122 (300)
T ss_pred cchHH---HHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhccc-chHhHHhhHHHHHhhheeeEE
Confidence 22222 23446677888888888999999999999999999 999999999999999876543
No 90
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=96.34 E-value=0.12 Score=44.09 Aligned_cols=68 Identities=10% Similarity=-0.007 Sum_probs=59.3
Q ss_pred HhHHHHHHHHHHHHhhhhhhhcccHhHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHhhhhee
Q 019698 86 SVIPIGAMFAMTLWLGNTAYLYISVAFAQMLKAIMPVAVFILGVAAGLEVMSCRMLLIMSVISFGVVV 153 (337)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~al~~~~~~~~~ii~~~~Pv~~~l~~~~~~~er~~~~~~~~i~l~~~G~~l 153 (337)
......+..+....+..+.+++.+...........++++.++++++++|+++..++.|..+.+.|+.+
T Consensus 154 ~~~~~~~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~l 221 (222)
T TIGR00803 154 AVWIVGLLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFL 221 (222)
T ss_pred HHHHHHHHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEe
Confidence 34445555677778888999999999999999999999999999999999999999999999888764
No 91
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=96.05 E-value=0.22 Score=44.67 Aligned_cols=140 Identities=16% Similarity=0.156 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCCCChHHHHHHHhHHHHHHHHHHHHhhccc---cc---ccccccCc--cchHHH
Q 019698 166 VVYQMGGVVGEALRLIFMEILVKRKGLKLNPISVMYYVSPCSALCLFIPWIFLEKP---KM---DALETWHF--PPLMLT 237 (337)
Q Consensus 166 ~i~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~---~~---~~~~~~~~--~~~~~~ 237 (337)
.+..+...+-.+......|.-.++++.++.|....+..-+.=.++.+......+.. .. .....+.. ..+-+.
T Consensus 17 ~~~l~~~t~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lk~~ 96 (345)
T KOG2234|consen 17 YLSLIVLTAQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRETLKVS 96 (345)
T ss_pred HHHHHHHHHHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHHHHHHH
Confidence 34444555556666666676666555577888887776655555443333333211 11 11111211 224455
Q ss_pred HHHHHHHHHHHHHHHHHhhcchhHHHHHhhhhhHHHhhhhHhccCCcccchhhHHHHHHHHHHHHHhhh
Q 019698 238 LNCLCTFALNLSVFLVISHTSALTIRVAGVVKDWVVVLFSALLFADTKLTIINLFGYGIAIAGVAAYNN 306 (337)
Q Consensus 238 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~t~~~~~G~~li~~gv~l~~~ 306 (337)
...++...-|...+...++.+|.+..+...++...+.+++.++++++ ++..||....+...|+.+.+.
T Consensus 97 vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rk-Ls~~Qw~Al~lL~~Gv~~vQ~ 164 (345)
T KOG2234|consen 97 VPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRK-LSRLQWMALVLLFAGVALVQL 164 (345)
T ss_pred HHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHhc
Confidence 56666666676777889999999999999999999999999999999 999999999999999998873
No 92
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=95.93 E-value=0.037 Score=46.47 Aligned_cols=133 Identities=14% Similarity=0.129 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHHHhhhc-CCCCCh-------HHHHHHHhHHHHHHHHHHHHhhcccccccccccCccchHHHHHHHHHH
Q 019698 173 VVGEALRLIFMEILVKRK-GLKLNP-------ISVMYYVSPCSALCLFIPWIFLEKPKMDALETWHFPPLMLTLNCLCTF 244 (337)
Q Consensus 173 ~~~~a~~~v~~~~~~~~~-~~~~~~-------~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 244 (337)
-+||=.|.+.++|+.+.+ +.+=.. ..+.+.+..+..++.=....+.+....+..+. ++-..+.+...
T Consensus 22 fvCYF~yGI~QEkitrGkYg~~g~~~E~FTfalaLVf~qC~~N~vfAkvl~~ir~~~~~D~t~~-----~~YaAcs~sYL 96 (337)
T KOG1580|consen 22 FVCYFVYGIQQEKITRGKYGLPGESIEKFTFALALVFFQCTANTVFAKVLFLIRKKTEIDNTPT-----KMYAACSASYL 96 (337)
T ss_pred hheehhhhhHHHHhhccccCCCCcchheehHHHHHHHHHHHHHHHHHHhheeecccccccCCcc-----hHHHHHHHHHH
Confidence 458888999999998843 111111 22233332222222211111222222222222 22233333333
Q ss_pred HHHHHHHHHHhhcchhHHHHHhhhhhHHHhhhhHhccCCcccchhhHHHHHHHHHHHHHhhhcccch
Q 019698 245 ALNLSVFLVISHTSALTIRVAGVVKDWVVVLFSALLFADTKLTIINLFGYGIAIAGVAAYNNHKLKK 311 (337)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~t~~~~~G~~li~~gv~l~~~~~~~~ 311 (337)
+...+.+.++++.+=-+.-.-...+|+..+++|+++.+.. .+|....-...|+.|+.++.++++|.
T Consensus 97 lAMVssN~Alq~vpYPTqVlgKScKPIPVMilGVl~~~Ks-Y~w~kY~cVL~IV~GValFmYK~~Kv 162 (337)
T KOG1580|consen 97 LAMVSSNQALQYVPYPTQVLGKSCKPIPVMILGVLFAHKS-YHWRKYCCVLMIVVGVALFMYKENKV 162 (337)
T ss_pred HHHHhccchhcccCCcHHHhcccCCCcceeeeehhhhccc-ccHHHHHHHHHHHHHHHHhhcccccc
Confidence 4445567788888777777778899999999999999999 99999999999999999998876553
No 93
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=95.92 E-value=0.028 Score=42.10 Aligned_cols=64 Identities=22% Similarity=0.087 Sum_probs=54.9
Q ss_pred HHHHHHHHHhhhhhhhcccHhHHHHH-HHHHHHHHHHHHHHhcccccchhhHHHHHHHhhhheee
Q 019698 91 GAMFAMTLWLGNTAYLYISVAFAQML-KAIMPVAVFILGVAAGLEVMSCRMLLIMSVISFGVVVA 154 (337)
Q Consensus 91 ~~~~~~~~~~~~~al~~~~~~~~~ii-~~~~Pv~~~l~~~~~~~er~~~~~~~~i~l~~~G~~l~ 154 (337)
-+++..+...+++.+...+.+.+..+ ++++=++|++.++++.+|..+++.++|+.+.+.|+.+.
T Consensus 48 f~lNq~GSv~f~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~Lc 112 (113)
T PF10639_consen 48 FLLNQSGSVLFFLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVALC 112 (113)
T ss_pred HHHHHHHHHHHHHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeeee
Confidence 33466777788889999999988877 48888999999999988888999999999999999874
No 94
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=95.36 E-value=0.058 Score=39.11 Aligned_cols=49 Identities=16% Similarity=0.215 Sum_probs=27.2
Q ss_pred HHHHHHHhhcchhHH-HHHhhhhhHHHhhhhHhccCCcccchhhHHHHHHH
Q 019698 248 LSVFLVISHTSALTI-RVAGVVKDWVVVLFSALLFADTKLTIINLFGYGIA 297 (337)
Q Consensus 248 ~~~~~~~~~~~~~~~-~~~~~~~pv~~~i~~~~~~~e~~~t~~~~~G~~li 297 (337)
+...+++|+.+...+ .+...+..+...+.|.++|||+ +|+.+++|+.+|
T Consensus 44 ~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~-~s~~~~~gi~lI 93 (93)
T PF00893_consen 44 YFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGES-LSLSKWLGIGLI 93 (93)
T ss_dssp HHHHHHH-------HHHHHHHHHHHHHHHHHHHHH---------HHHHHHH
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCC-CCHHHHhheeeC
Confidence 345567888766555 5566788899999999999999 999999999875
No 95
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=94.54 E-value=0.27 Score=43.12 Aligned_cols=135 Identities=7% Similarity=-0.042 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhhcccccCCC--hhhhhhHhHHHHHH
Q 019698 16 YAYILLYIALSSGQIFFNKWVLSSKEINFPFPLGLTLLHMVFSSVLCFLLTKVFKVMKVEDGMT--LEIYTTSVIPIGAM 93 (337)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~p~~~~~~r~~~a~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 93 (337)
+.++.....+=+..+..++.++. ++..+ ++.+.+.-.++..++........+.......+- -++.++.++..+.+
T Consensus 174 ~~Ll~~~L~fDgfTn~tQd~lf~--~~k~s-~~~mM~~vNLf~~i~~~~~li~qg~~~~av~F~~~hp~~~~Di~l~s~~ 250 (327)
T KOG1581|consen 174 ILLLFGYLLFDGFTNATQDSLFK--KYKVS-SLHMMFGVNLFSAILNGTYLILQGHLLPAVSFIKEHPDVAFDILLYSTC 250 (327)
T ss_pred HHHHHHHHHHHhhHHhHHHHHhc--cCCcc-HhHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHcChhHHHHHHHHHHh
Confidence 33333333333333445566666 55566 777777777766666555533222222111111 23345688889999
Q ss_pred HHHHHHhhhhhhhcccHhHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHhhhhee
Q 019698 94 FAMTLWLGNTAYLYISVAFAQMLKAIMPVAVFILGVAAGLEVMSCRMLLIMSVISFGVVV 153 (337)
Q Consensus 94 ~~~~~~~~~~al~~~~~~~~~ii~~~~Pv~~~l~~~~~~~er~~~~~~~~i~l~~~G~~l 153 (337)
.+.++.+.+.-++.-++=+.+.|..+-=++.++++.+.++.++++.+|.|+.+.+.|+.+
T Consensus 251 gavGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l 310 (327)
T KOG1581|consen 251 GAVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFL 310 (327)
T ss_pred hhhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchhhccCeeeehHHHHH
Confidence 999999999999877777788888888899999999999999999999999886666543
No 96
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=93.70 E-value=0.04 Score=46.70 Aligned_cols=132 Identities=10% Similarity=0.056 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChHHHHHHHhHHHHHHHHHHHHhhcccccccccccCccchHHHHHHHHHH
Q 019698 165 GVVYQMGGVVGEALRLIFMEILVKRKGLKLNPISVMYYVSPCSALCLFIPWIFLEKPKMDALETWHFPPLMLTLNCLCTF 244 (337)
Q Consensus 165 G~i~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 244 (337)
+++.+++=++.|+.......|.-. +|.+-..-+++-+.++.+..+.+ ..|.. .+.. +..-+.+|..-.
T Consensus 3 ~~liaL~P~l~WGsip~v~~k~GG------~p~qQ~lGtT~GALifaiiv~~~-~~p~~----T~~~-~iv~~isG~~Ws 70 (288)
T COG4975 3 DLLIALLPALGWGSIPLVANKFGG------KPYQQTLGTTLGALIFAIIVFLF-VSPEL----TLTI-FIVGFISGAFWS 70 (288)
T ss_pred hHHHHHHHHHHhcccceeeeecCC------ChhHhhhhccHHHHHHHHHHhee-ecCcc----chhh-HHHHHHhhhHhh
Confidence 456677777888876665555432 55555554554444444333333 22221 1111 133455555555
Q ss_pred HHHHHHHHHHhhcchhHHHHH-hhhhhHHHhhhhHhccCCcccchhhH----HHHHHHHHHHHHhhhccc
Q 019698 245 ALNLSVFLVISHTSALTIRVA-GVVKDWVVVLFSALLFADTKLTIINL----FGYGIAIAGVAAYNNHKL 309 (337)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~-~~~~pv~~~i~~~~~~~e~~~t~~~~----~G~~li~~gv~l~~~~~~ 309 (337)
..|...+++.+..+.+.+... +-.+-+-+.++++++|||= .++.++ ++.++++.|+++..++++
T Consensus 71 ~GQ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW-~t~~~~IlG~iAliliviG~~lTs~~~~ 139 (288)
T COG4975 71 FGQANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEW-TTPTQIILGFIALILIVIGIYLTSKQDR 139 (288)
T ss_pred hhhhhhhhheeeeeeeccccccchhhHhhceeeeEEEEecc-CcchhHHHHHHHHHHHHHhheEeeeecc
Confidence 566667777777666555433 3467778899999999998 665543 455788888887766544
No 97
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=93.27 E-value=2 Score=31.43 Aligned_cols=61 Identities=13% Similarity=0.115 Sum_probs=42.6
Q ss_pred HHHHHHhhhhhhhcccHhHHHHHHHHHHH-HHHHHHHHhcccccchhhHHHHHHHhhhheee
Q 019698 94 FAMTLWLGNTAYLYISVAFAQMLKAIMPV-AVFILGVAAGLEVMSCRMLLIMSVISFGVVVA 154 (337)
Q Consensus 94 ~~~~~~~~~~al~~~~~~~~~ii~~~~Pv-~~~l~~~~~~~er~~~~~~~~i~l~~~G~~l~ 154 (337)
|....-..=.|.+.-|.+.--+++=...+ .-..++.+++||++++....|-.+.+.++.++
T Consensus 45 Y~l~VPANRiG~~~~s~~QLKi~QEvitL~vF~~Fsv~~l~E~l~~n~l~af~~i~~av~fi 106 (108)
T PF04342_consen 45 YCLQVPANRIGYQTFSLAQLKIIQEVITLVVFAPFSVFYLGEPLKWNYLWAFLCILGAVYFI 106 (108)
T ss_pred HHHhCcchhhhccccCHHHHHHHHHHHhhheeHHHHHHHhCCCccHHHHHHHHHHHHhhhee
Confidence 55555555566666666666666644333 33677889999999999999999887776553
No 98
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.12 E-value=3.6 Score=32.55 Aligned_cols=131 Identities=15% Similarity=0.027 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhhcccccCCChhhhhhHhHHHHHHHHHH
Q 019698 18 YILLYIALSSGQIFFNKWVLSSKEINFPFPLGLTLLHMVFSSVLCFLLTKVFKVMKVEDGMTLEIYTTSVIPIGAMFAMT 97 (337)
Q Consensus 18 ~~~~~~~~~~~~~~~~k~~~~~~~~~~~~p~~~~~~r~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (337)
..+.-+.+...+.-.|--+-. ..+.|+.-.+.-+.++..++..+....++.+ ......+..| ..+..|++-+..
T Consensus 9 ~~i~aG~~l~~Q~~iN~qL~~----~~~spl~As~isf~vGt~~L~~l~l~~~~~~-~~a~~~~~pw-W~~~GG~lGa~~ 82 (150)
T COG3238 9 FAILAGALLPLQAAINGRLAR----YLGSPLLASLISFLVGTVLLLILLLIKQGHP-GLAAVASAPW-WAWIGGLLGAIF 82 (150)
T ss_pred HHHHHhhhhhhHHHHHHHHHH----HcCChHHHHHHHHHHHHHHHHHHHHHhcCCC-chhhccCCch-HHHHccchhhhh
Confidence 334444444444444444433 3445888889999988888877776633332 2222233333 334444444444
Q ss_pred HHhhhhhhhcccHhHHHHHH-HHHHHHHHHHHHH----hcccccchhhHHHHHHHhhhheee
Q 019698 98 LWLGNTAYLYISVAFAQMLK-AIMPVAVFILGVA----AGLEVMSCRMLLIMSVISFGVVVA 154 (337)
Q Consensus 98 ~~~~~~al~~~~~~~~~ii~-~~~Pv~~~l~~~~----~~~er~~~~~~~~i~l~~~G~~l~ 154 (337)
..........+.++..+.+. ..+-+.-+++..+ .-+++++..++.++++.++|+.+.
T Consensus 83 vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~ 144 (150)
T COG3238 83 VTSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLA 144 (150)
T ss_pred hhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHh
Confidence 44444555566655554443 4555555666654 233678999999999999995543
No 99
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.97 E-value=1.1 Score=39.71 Aligned_cols=137 Identities=14% Similarity=0.087 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhhcc----cccCCChhhhhhHhHHHHH
Q 019698 17 AYILLYIALSSGQIFFNKWVLSSKEINFPFPLGLTLLHMVFSSVLCFLLTKVFKVMK----VEDGMTLEIYTTSVIPIGA 92 (337)
Q Consensus 17 ~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~p~~~~~~r~~~a~~~l~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 92 (337)
.++.....+.....+..|.-.+.++ +. -+...++..+.+.+.+.......++.+ ..+.......+..+...++
T Consensus 160 ~w~~~n~~~~a~~~v~~kk~vd~~~--l~-~~~lv~yNnl~~L~~l~~~~~~~ge~~~l~~~~~~~~~~~~~~~~~lScv 236 (314)
T KOG1444|consen 160 SWALANCLTTAAFVVYVKKSVDSAN--LN-KFGLVFYNNLLSLPPLLILSFITGELDALSLNFDNWSDSSVLVVMLLSCV 236 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccc--cc-ceeEEeehhHHHHHHHHHHHHHhcchHHHHhhcccccchhHHHHHHHHHH
Confidence 3444444555556666676666333 33 455667777777776666655555432 0111112223445666677
Q ss_pred HHHHHHHhhhhhhhcccHhHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHhhhheeeee
Q 019698 93 MFAMTLWLGNTAYLYISVAFAQMLKAIMPVAVFILGVAAGLEVMSCRMLLIMSVISFGVVVASY 156 (337)
Q Consensus 93 ~~~~~~~~~~~al~~~~~~~~~ii~~~~Pv~~~l~~~~~~~er~~~~~~~~i~l~~~G~~l~~~ 156 (337)
+-.+-..+.+++.+.+|+.+.++.....-..+.+...++.+++.++....|+.++++|.++...
T Consensus 237 ~gf~isy~s~~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y~~ 300 (314)
T KOG1444|consen 237 MGFGISYTSFLCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLYSY 300 (314)
T ss_pred HHHHHHHHHHHHHhhccccceeehhhhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhHHhh
Confidence 7777778888899999998888888656666666667777788888888888887777665443
No 100
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=91.89 E-value=1.9 Score=36.21 Aligned_cols=101 Identities=7% Similarity=-0.013 Sum_probs=72.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhcccc---cCCChhhhhhHhHHHHHHHHHHHHhhhhhhhcccHhHHHHHHHHHHHH
Q 019698 47 PLGLTLLHMVFSSVLCFLLTKVFKVMKVE---DGMTLEIYTTSVIPIGAMFAMTLWLGNTAYLYISVAFAQMLKAIMPVA 123 (337)
Q Consensus 47 p~~~~~~r~~~a~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~ii~~~~Pv~ 123 (337)
-..-.++..+.+..+++.+.....+..+. ...+ .+-...+...|++..+-..+.-|+.+-+|.++++...++.-.-
T Consensus 185 d~dtmfYnNllslPiL~~~s~~~edws~~n~annl~-~d~l~am~ISgl~svgiSy~saWcvrVtSSTtySMvGALNKlp 263 (309)
T COG5070 185 DFDTMFYNNLLSLPILLSFSFLFEDWSPGNLANNLS-VDSLMAMFISGLCSVGISYCSAWCVRVTSSTTYSMVGALNKLP 263 (309)
T ss_pred hhhHHHHhhhHHHHHHHHHHHHhccCCcchhhcCCC-hHHHHHHHHHHHHHhhhhhccceeEeehhhhHHHHHHHhhhCh
Confidence 44556777777777776665554433321 1222 2223467778888888888899999999999999999998888
Q ss_pred HHHHHHHhcccccchhhHHHHHHHh
Q 019698 124 VFILGVAAGLEVMSCRMLLIMSVIS 148 (337)
Q Consensus 124 ~~l~~~~~~~er~~~~~~~~i~l~~ 148 (337)
..+.+.++++|..++.+..++.++.
T Consensus 264 ~alaGlvffdap~nf~si~sillGf 288 (309)
T COG5070 264 IALAGLVFFDAPVNFLSIFSILLGF 288 (309)
T ss_pred HHHhhhhhcCCchhHHHHHHHHHHH
Confidence 8888888888888888777766543
No 101
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=91.80 E-value=2.7 Score=37.86 Aligned_cols=143 Identities=13% Similarity=0.103 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChHHHHHHHhHHHHHHHHHHH-Hhhcccccc---cccccCccchHHHH
Q 019698 163 WIGVVYQMGGVVGEALRLIFMEILVKRKGLKLNPISVMYYVSPCSALCLFIPW-IFLEKPKMD---ALETWHFPPLMLTL 238 (337)
Q Consensus 163 ~~G~i~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~-~~~~~~~~~---~~~~~~~~~~~~~~ 238 (337)
..|+++..+++.+.+.+.+=.||..+ =++|..+....+-..+.+|.. ...+-|... ...+....+...+.
T Consensus 6 i~Gii~h~iGg~~~~sfy~P~kkvk~------WsWEs~Wlv~gi~swli~P~~~a~l~ip~~~~i~~~~~~~~l~~~~l~ 79 (344)
T PF06379_consen 6 ILGIIFHAIGGFASGSFYVPFKKVKG------WSWESYWLVQGIFSWLIVPWLWALLAIPDFFSIYSATPASTLFWTFLF 79 (344)
T ss_pred HHHHHHHHHHHHHhhhhccchhhcCC------ccHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHhCChhHHHHHHHH
Confidence 57999999999999998888887632 455655554433334444543 222322221 11111111122333
Q ss_pred HHHHHHHHHHHHHHHHhhcc-hhHHHHHhhhhhHHHhhhhHhc-------cCCcccchhhHHHHHHHHHHHHHhhhcccc
Q 019698 239 NCLCTFALNLSVFLVISHTS-ALTIRVAGVVKDWVVVLFSALL-------FADTKLTIINLFGYGIAIAGVAAYNNHKLK 310 (337)
Q Consensus 239 ~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~pv~~~i~~~~~-------~~e~~~t~~~~~G~~li~~gv~l~~~~~~~ 310 (337)
+.+-+.. ...+-..+|+.+ +...++..-+-.++++++--++ ++++ -....++|.+++++|+.+..+.-.+
T Consensus 80 G~lWGIG-gltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~-~g~~vL~Gv~v~LiGIai~g~AG~~ 157 (344)
T PF06379_consen 80 GVLWGIG-GLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATP-SGQIVLLGVAVCLIGIAICGKAGSM 157 (344)
T ss_pred HHHHhcc-hhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCC-CchhhhhHHHHHHHHHHHHhHHHHh
Confidence 3222222 111223344443 2223333333334444443333 2333 3567899999999999988776544
Q ss_pred hhh
Q 019698 311 KEA 313 (337)
Q Consensus 311 ~~~ 313 (337)
|++
T Consensus 158 Ke~ 160 (344)
T PF06379_consen 158 KEK 160 (344)
T ss_pred hhh
Confidence 443
No 102
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=91.13 E-value=0.2 Score=41.05 Aligned_cols=66 Identities=14% Similarity=0.174 Sum_probs=58.0
Q ss_pred HHHHHHHHHHhhcchhHHHHHhhhhhHHHhhhhHhccCCcccchhhHHHHHHHHHHHHHhhhcccch
Q 019698 245 ALNLSVFLVISHTSALTIRVAGVVKDWVVVLFSALLFADTKLTIINLFGYGIAIAGVAAYNNHKLKK 311 (337)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~t~~~~~G~~li~~gv~l~~~~~~~~ 311 (337)
+.+|.+..++++.+|+.++....-+..+..++++++++|+ +....++..++.+.|+.+..+..+..
T Consensus 65 ~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~-~~~~kIlaailAI~GiVmiay~DN~~ 130 (290)
T KOG4314|consen 65 GANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDR-FMGFKILAAILAIGGIVMIAYADNEH 130 (290)
T ss_pred cCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccc-hhhhhHHHHHHHhCcEEEEEeccchh
Confidence 4566677889999999999999999999999999999999 99999999999999988877665543
No 103
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=91.08 E-value=2.6 Score=31.64 Aligned_cols=52 Identities=19% Similarity=0.204 Sum_probs=37.8
Q ss_pred HHHHhhcchhHHHHH-hhhhhHHHhhhhHhccCCcccchhhHHHHHHHHHHHHH
Q 019698 251 FLVISHTSALTIRVA-GVVKDWVVVLFSALLFADTKLTIINLFGYGIAIAGVAA 303 (337)
Q Consensus 251 ~~~~~~~~~~~~~~~-~~~~pv~~~i~~~~~~~e~~~t~~~~~G~~li~~gv~l 303 (337)
++.+++.+-+.+... +.+.=+++.+.++++.+|. .+...++|+++++.|+.+
T Consensus 59 ~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~-~~~~~~~G~~Li~~Gv~L 111 (113)
T PF10639_consen 59 FLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEV-ISRRTWLGMALILAGVAL 111 (113)
T ss_pred HHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcc-cchhHHHHHHHHHcCeee
Confidence 344555554443333 4666788888888777777 899999999999999754
No 104
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=88.43 E-value=4.2 Score=37.01 Aligned_cols=141 Identities=13% Similarity=0.077 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhhcccccCCC---hhhhhhHh
Q 019698 11 EQVLTYAYILLYIALSSGQIFFNKWVLSSKEINFPFPLGLTLLHMVFSSVLCFLLTKVFKVMKVEDGMT---LEIYTTSV 87 (337)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~p~~~~~~r~~~a~~~l~~~~~~~~~~~~~~~~~---~~~~~~~~ 87 (337)
.-+..+..++.+. .+.++-|.-.++++-+.+-+.++.+...+ ..+++.|...+..... .++++ ..++. ..
T Consensus 248 G~llaL~sA~~Ya----vY~vllk~~~~~eg~rvdi~lffGfvGLf-nllllwP~l~iL~~~~-~e~F~lP~~~q~~-~v 320 (416)
T KOG2765|consen 248 GNLLALLSALLYA----VYTVLLKRKIGDEGERVDIQLFFGFVGLF-NLLLLWPPLIILDFFG-EERFELPSSTQFS-LV 320 (416)
T ss_pred HHHHHHHHHHHHH----HHHHHHHhhcccccccccHHHHHHHHHHH-HHHHHhHHHHHHHHhc-cCcccCCCCceeE-ee
Confidence 3344444443333 34566677777654466656666555533 4444444433332221 22222 22222 22
Q ss_pred HHHH-HHHHHHHHhhhhhhhcccHhHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHhhhheeeeecC
Q 019698 88 IPIG-AMFAMTLWLGNTAYLYISVAFAQMLKAIMPVAVFILGVAAGLEVMSCRMLLIMSVISFGVVVASYGE 158 (337)
Q Consensus 88 ~~~~-~~~~~~~~~~~~al~~~~~~~~~ii~~~~Pv~~~l~~~~~~~er~~~~~~~~i~l~~~G~~l~~~~~ 158 (337)
+..+ +.-...-.+|.+|.-.++.-++++-.+++....++...++.+++++...++|.+..++|.+++...+
T Consensus 321 v~~~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~~ 392 (416)
T KOG2765|consen 321 VFNNLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNISS 392 (416)
T ss_pred eHhhHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheeccc
Confidence 2333 3367788899999999999899999998888889999999999999999999999999988876543
No 105
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=83.42 E-value=15 Score=32.23 Aligned_cols=66 Identities=21% Similarity=0.231 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHHhhcchhHHHHHhhhhhHHHhhhhHhccCCcccchhhHHHHHHHHHHHHHhh
Q 019698 239 NCLCTFALNLSVFLVISHTSALTIRVAGVVKDWVVVLFSALLFADTKLTIINLFGYGIAIAGVAAYN 305 (337)
Q Consensus 239 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~t~~~~~G~~li~~gv~l~~ 305 (337)
..++-.......+-.+..++++...+..-.-.++.-+++.-+++.+ ++..||+|+..+.+|+....
T Consensus 92 Pal~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~t-i~~~qWl~i~fv~lGlviVg 157 (372)
T KOG3912|consen 92 PALCDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRT-ITGRQWLGILFVSLGLVIVG 157 (372)
T ss_pred hHHHHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcc-cchhhHHHHHHHHhhhheee
Confidence 3444433333344556677777777777777888999999999999 99999999999999987644
No 106
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=81.05 E-value=0.49 Score=40.96 Aligned_cols=94 Identities=13% Similarity=0.121 Sum_probs=0.0
Q ss_pred cccHhHHHHHHHHHHHHHHHH--HHHhcccccchhhHHHHHHHhhhheeeeecCccc--hHHHHHHHHHHHHHHHHHHHH
Q 019698 107 YISVAFAQMLKAIMPVAVFIL--GVAAGLEVMSCRMLLIMSVISFGVVVASYGEINI--NWIGVVYQMGGVVGEALRLIF 182 (337)
Q Consensus 107 ~~~~~~~~ii~~~~Pv~~~l~--~~~~~~er~~~~~~~~i~l~~~G~~l~~~~~~~~--~~~G~i~~l~s~~~~a~~~v~ 182 (337)
-.+-+..+++.+...+.++++ -++|.|+-+...-.+|++++++-..++....... =+.|.++.++.....-.-..|
T Consensus 46 d~t~~a~~vl~sfAvvliiIIiIImlF~RrLLCPLGlLCiilimi~lLv~~L~tLtGQ~LF~Gi~~l~l~~lLaL~vW~Y 125 (381)
T PF05297_consen 46 DLTQGALTVLYSFAVVLIIIIIIIMLFKRRLLCPLGLLCIILIMIVLLVSMLWTLTGQTLFVGIVILFLCCLLALGVWFY 125 (381)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445556666554433332 2334444467778888888777766665543322 234654444333322222233
Q ss_pred HHHHhhhcCCCCChHHHHHHH
Q 019698 183 MEILVKRKGLKLNPISVMYYV 203 (337)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~ 203 (337)
.. ++++++ -+-++++.+.
T Consensus 126 m~-lLr~~G--As~WtiLaFc 143 (381)
T PF05297_consen 126 MW-LLRELG--ASFWTILAFC 143 (381)
T ss_dssp ---------------------
T ss_pred HH-HHHHhh--hHHHHHHHHH
Confidence 22 555443 2566666554
No 107
>PRK02237 hypothetical protein; Provisional
Probab=80.12 E-value=21 Score=26.35 Aligned_cols=40 Identities=8% Similarity=-0.019 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHhcccccchhhHHHHHHHhhhheeeeec
Q 019698 118 AIMPVAVFILGVAAGLEVMSCRMLLIMSVISFGVVVASYG 157 (337)
Q Consensus 118 ~~~Pv~~~l~~~~~~~er~~~~~~~~i~l~~~G~~l~~~~ 157 (337)
....+...+-.+.+.|+|+++.++.|..++++|+.++.+.
T Consensus 67 GvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~~ 106 (109)
T PRK02237 67 GVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMYA 106 (109)
T ss_pred hHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHheec
Confidence 3445555677889999999999999999999999877654
No 108
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=79.66 E-value=22 Score=26.23 Aligned_cols=40 Identities=13% Similarity=0.097 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHhcccccchhhHHHHHHHhhhheeeeec
Q 019698 118 AIMPVAVFILGVAAGLEVMSCRMLLIMSVISFGVVVASYG 157 (337)
Q Consensus 118 ~~~Pv~~~l~~~~~~~er~~~~~~~~i~l~~~G~~l~~~~ 157 (337)
....+...+-.+.+.|+||++.+++|..++++|+.++.+.
T Consensus 65 GvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~~ 104 (107)
T PF02694_consen 65 GVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILFA 104 (107)
T ss_pred hhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEec
Confidence 3445566777889999999999999999999999887764
No 109
>PRK02237 hypothetical protein; Provisional
Probab=78.76 E-value=4.8 Score=29.66 Aligned_cols=46 Identities=15% Similarity=0.031 Sum_probs=37.9
Q ss_pred HHHHhhhhhHHHhhhhHhccCCcccchhhHHHHHHHHHHHHHhhhcc
Q 019698 262 IRVAGVVKDWVVVLFSALLFADTKLTIINLFGYGIAIAGVAAYNNHK 308 (337)
Q Consensus 262 ~~~~~~~~pv~~~i~~~~~~~e~~~t~~~~~G~~li~~gv~l~~~~~ 308 (337)
.+.++-+-.+.+.++++.+-+++ ++...++|..+++.|+.+..+.+
T Consensus 62 YAAYGGvyI~~Sl~W~w~vdg~~-Pd~~D~iGa~v~L~G~~iI~~~p 107 (109)
T PRK02237 62 YAAYGGVYVAGSLLWLWVVDGVR-PDRWDWIGAAICLVGMAVIMYAP 107 (109)
T ss_pred HHHhhhHHHHHHHHHHHHhcCcC-CChhHHHhHHHHHHhHHHheecC
Confidence 34455566778889999999999 99999999999999998765543
No 110
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=77.65 E-value=5.8 Score=34.62 Aligned_cols=108 Identities=14% Similarity=-0.069 Sum_probs=72.2
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHhhhcccc---cCCChhhhhhHhHHHHHHHHHHHHhhhhhhhcccHhHHHHHHHHH
Q 019698 44 FPFPLGLTLLHMVFSSVLCFLLTKVFKVMKVE---DGMTLEIYTTSVIPIGAMFAMTLWLGNTAYLYISVAFAQMLKAIM 120 (337)
Q Consensus 44 ~~~p~~~~~~r~~~a~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~ii~~~~ 120 (337)
-+.-|.++++..+.|.++.++.+.+.+....- +..+..++|..+...|++.........+=++.+|+-+..+-....
T Consensus 212 ~~~iw~lt~ynnv~a~lLflpll~lnge~~~v~~~~~l~a~~Fw~~mtLsglfgF~mgyvTg~QIK~TSplThnISgTAk 291 (347)
T KOG1442|consen 212 GDCIWRLTAYNNVNALLLFLPLLILNGEFQAVVGFPHLPAIKFWILMTLSGLFGFAMGYVTGWQIKVTSPLTHNISGTAK 291 (347)
T ss_pred cCeehhhHHHHHHHHHHHHHHHHHHcchHHHHcCcccchHHHHHHHHHHHHHHHHHhhheeeEEEEecccceeeecHhHH
Confidence 34468999999999999999988776654422 233233445455666666444555555556677766666655555
Q ss_pred HHHHHHHHHHhcccccchhhHHHHHHHhhhh
Q 019698 121 PVAVFILGVAAGLEVMSCRMLLIMSVISFGV 151 (337)
Q Consensus 121 Pv~~~l~~~~~~~er~~~~~~~~i~l~~~G~ 151 (337)
-.-=.+++..+.+|-.+...|.+.++.+.|.
T Consensus 292 a~aQTvlAv~~y~E~ks~lwwtsn~~vLvgs 322 (347)
T KOG1442|consen 292 AAAQTVLAVAYYSETKSGLWWTSNIVVLVGS 322 (347)
T ss_pred HHHHHHHHHHHHHHHhhhheeeeeEEEEehh
Confidence 5556777888889988888888777665554
No 111
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=77.18 E-value=5.1 Score=29.45 Aligned_cols=46 Identities=20% Similarity=0.070 Sum_probs=38.2
Q ss_pred HHHHhhhhhHHHhhhhHhccCCcccchhhHHHHHHHHHHHHHhhhcc
Q 019698 262 IRVAGVVKDWVVVLFSALLFADTKLTIINLFGYGIAIAGVAAYNNHK 308 (337)
Q Consensus 262 ~~~~~~~~pv~~~i~~~~~~~e~~~t~~~~~G~~li~~gv~l~~~~~ 308 (337)
.+.++-+-.+.+.++++.+-+++ ++...++|..+++.|+.+..+.+
T Consensus 60 YAAYGGvfI~~Sl~W~w~vdg~~-Pd~~D~iGa~i~L~G~~iI~~~P 105 (107)
T PF02694_consen 60 YAAYGGVFIVASLLWGWLVDGVR-PDRWDWIGAAICLVGVAIILFAP 105 (107)
T ss_pred HHHhhhhHHHHHHHHHhhhcCcC-CChHHHHhHHHHHHhHHheEecC
Confidence 34455566788899999999999 99999999999999998766543
No 112
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=71.68 E-value=37 Score=24.90 Aligned_cols=39 Identities=13% Similarity=-0.029 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHhcccccchhhHHHHHHHhhhheeeeec
Q 019698 119 IMPVAVFILGVAAGLEVMSCRMLLIMSVISFGVVVASYG 157 (337)
Q Consensus 119 ~~Pv~~~l~~~~~~~er~~~~~~~~i~l~~~G~~l~~~~ 157 (337)
...+...+-.+++-|.|+++.+|.|..++++|+.++.+.
T Consensus 67 vyI~~sL~W~~~Vdg~~pdr~D~~Ga~icl~G~~vil~~ 105 (109)
T COG1742 67 VYIAASLAWLWVVDGVRPDRYDWIGAAICLAGVAVILFG 105 (109)
T ss_pred hHHHHHHHHHHHHcCcCCcHHHhhhHHHHHhceeeeEeC
Confidence 344555666788899999999999999999998888765
No 113
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=71.55 E-value=72 Score=30.23 Aligned_cols=19 Identities=21% Similarity=0.223 Sum_probs=12.8
Q ss_pred ccccccccccccccccccC
Q 019698 318 SDDSQQTQLTATTTSSTSE 336 (337)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~ 336 (337)
+++..++.++.|+++.++|
T Consensus 437 ~~~~~~~~~~~~~~~~~~~ 455 (455)
T TIGR00892 437 EREGARDKKDAEGDSRESE 455 (455)
T ss_pred hhcccccccccccccccCC
Confidence 4455666777777777765
No 114
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.96 E-value=1 Score=40.03 Aligned_cols=121 Identities=14% Similarity=0.141 Sum_probs=77.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChHHHHHHHhHHHHHHHHHHHHhhccccc-ccccccCccchHHHHH
Q 019698 161 INWIGVVYQMGGVVGEALRLIFMEILVKRKGLKLNPISVMYYVSPCSALCLFIPWIFLEKPKM-DALETWHFPPLMLTLN 239 (337)
Q Consensus 161 ~~~~G~i~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 239 (337)
.+..|.++++.+++..+...++.||-.++.+ .... --.+++.. ..++. ||.-+..
T Consensus 18 d~~~G~~LaissS~~Ig~sfilkKkgl~r~~----~~~~----------------ra~~gg~~yl~~~~----Ww~G~lt 73 (335)
T KOG2922|consen 18 DNIIGLVLAISSSIFIGSSFILKKKGLKRAG----ASGL----------------RAGEGGYGYLKEPL----WWAGMLT 73 (335)
T ss_pred CceeeeeehhhccEEEeeehhhhHHHHHHHh----hhcc----------------cccCCCcchhhhHH----HHHHHHH
Confidence 4567999999999999998888888766432 0000 00011111 01111 2332222
Q ss_pred HHHHHHHHHHHHHHHhhcchhHHHHHhhhhhHHHhhhhHhccCCcccchhhHHHHHHHHHHHHHhhhccc
Q 019698 240 CLCTFALNLSVFLVISHTSALTIRVAGVVKDWVVVLFSALLFADTKLTIINLFGYGIAIAGVAAYNNHKL 309 (337)
Q Consensus 240 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~t~~~~~G~~li~~gv~l~~~~~~ 309 (337)
-..+=..|+.. ....+++-++-++.+.-+.+.+++..+++|. +++...+|++++++|..+.-.+.+
T Consensus 74 m~vGei~NFaA---YaFAPasLVtPLGAlsvi~saila~~~L~Ek-l~~~g~lGc~l~v~Gst~iV~haP 139 (335)
T KOG2922|consen 74 MIVGEIANFAA---YAFAPASLVTPLGALSVIISAILASFFLKEK-LNLLGILGCVLCVVGSTTIVIHAP 139 (335)
T ss_pred HHHHhHhhHHH---HhhchHhhhccchhHHHHHHHHHHHHHHHHH-HHHhhhhheeEEecccEEEEEecC
Confidence 23333333332 3455677777788888999999999999999 999999999999999876544433
No 115
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=69.59 E-value=76 Score=27.65 Aligned_cols=101 Identities=7% Similarity=-0.025 Sum_probs=65.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhcccccCCChhhhhhHhHHHHHHHHHHHHhhhhhhhcccHhHHHHHHHHHHHHHHH
Q 019698 47 PLGLTLLHMVFSSVLCFLLTKVFKVMKVEDGMTLEIYTTSVIPIGAMFAMTLWLGNTAYLYISVAFAQMLKAIMPVAVFI 126 (337)
Q Consensus 47 p~~~~~~r~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~ii~~~~Pv~~~l 126 (337)
++...++......+..+++..... . + .+.......|.+.+..+.+..-.++.+..+....+=++.-+.+--
T Consensus 27 g~~fQw~~~~~i~~~g~~v~~~~~-~---p-----~f~p~amlgG~lW~~gN~~~vpii~~iGLglg~liW~s~n~l~Gw 97 (254)
T PF07857_consen 27 GFFFQWVMCSGIFLVGLVVNLILG-F---P-----PFYPWAMLGGALWATGNILVVPIIKTIGLGLGMLIWGSVNCLTGW 97 (254)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhcC-C---C-----cceeHHHhhhhhhhcCceeehhHhhhhhhHHHHHHHHHHHHHHHH
Confidence 777777777766555554443221 1 1 123355566788888888888899999999999888775554432
Q ss_pred H-HHH-hcc---c--ccchhhHHHHHHHhhhheeeee
Q 019698 127 L-GVA-AGL---E--VMSCRMLLIMSVISFGVVVASY 156 (337)
Q Consensus 127 ~-~~~-~~~---e--r~~~~~~~~i~l~~~G~~l~~~ 156 (337)
. +.+ +++ | +-.+..++|++++++|..+..+
T Consensus 98 ~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~f 134 (254)
T PF07857_consen 98 ASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIFSF 134 (254)
T ss_pred HHhhceeccccccccchhHHHHHHHHHHHHHHHheee
Confidence 2 222 222 2 2366788888888888776544
No 116
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=64.30 E-value=7.6 Score=28.50 Aligned_cols=29 Identities=17% Similarity=0.256 Sum_probs=25.6
Q ss_pred hhhhHhccCCcccchhhHHHHHHHHHHHHH
Q 019698 274 VLFSALLFADTKLTIINLFGYGIAIAGVAA 303 (337)
Q Consensus 274 ~i~~~~~~~e~~~t~~~~~G~~li~~gv~l 303 (337)
+.+++++++|+ +++....|+++++.+++.
T Consensus 77 ~~Fsv~~l~E~-l~~n~l~af~~i~~av~f 105 (108)
T PF04342_consen 77 APFSVFYLGEP-LKWNYLWAFLCILGAVYF 105 (108)
T ss_pred HHHHHHHhCCC-ccHHHHHHHHHHHHhhhe
Confidence 56778899999 999999999999888764
No 117
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=59.44 E-value=11 Score=27.71 Aligned_cols=61 Identities=21% Similarity=0.140 Sum_probs=46.6
Q ss_pred HHHHHHhhhhhhhcccHhHHHHHH-HHHHHHHHHHHHHhcccccchhhHHHHHHHhhhheee
Q 019698 94 FAMTLWLGNTAYLYISVAFAQMLK-AIMPVAVFILGVAAGLEVMSCRMLLIMSVISFGVVVA 154 (337)
Q Consensus 94 ~~~~~~~~~~al~~~~~~~~~ii~-~~~Pv~~~l~~~~~~~er~~~~~~~~i~l~~~G~~l~ 154 (337)
.-....++++-++..|.+.+.-+. +++-.|+.+.+..+..|-..++.++|..+.++|+.+.
T Consensus 62 NqcgSaly~~tLa~a~islavpv~nsltfafta~~G~~LGE~~~g~~a~lGt~liv~Gi~Lc 123 (125)
T KOG4831|consen 62 NQCGSALYYLTLASAPISLAVPVTNSLTFAFTAIFGKALGEETQGGLALLGTSLIVFGIWLC 123 (125)
T ss_pred HHhhHHHHHHHHhcCCceeeeeecchhHHHHHHHHHHHhccccccceeehhhhHHhhhhhhe
Confidence 334455667788888877766544 5677799999998877778888999999999998654
No 118
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=53.19 E-value=34 Score=24.77 Aligned_cols=31 Identities=19% Similarity=0.297 Sum_probs=27.0
Q ss_pred HhhhhHhccCCcccchhhHHHHHHHHHHHHHh
Q 019698 273 VVLFSALLFADTKLTIINLFGYGIAIAGVAAY 304 (337)
Q Consensus 273 ~~i~~~~~~~e~~~t~~~~~G~~li~~gv~l~ 304 (337)
-+.+|++.++|+ +.+..+.|+.++..|++..
T Consensus 83 Fv~Fsvfyl~ep-l~~~~l~a~~~i~gav~fi 113 (116)
T COG3169 83 FVPFSVFYLKEP-LRWNYLWAFLLILGAVYFI 113 (116)
T ss_pred HHHHHHHHHcCc-chHHHHHHHHHHHHHHHHh
Confidence 356789999999 9999999999999998764
No 119
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=52.15 E-value=89 Score=22.68 Aligned_cols=51 Identities=14% Similarity=0.043 Sum_probs=32.7
Q ss_pred hhhcccHhHHHHHHHHHHH-HHHHHHHHhcccccchhhHHHHHHHhhhheee
Q 019698 104 AYLYISVAFAQMLKAIMPV-AVFILGVAAGLEVMSCRMLLIMSVISFGVVVA 154 (337)
Q Consensus 104 al~~~~~~~~~ii~~~~Pv-~~~l~~~~~~~er~~~~~~~~i~l~~~G~~l~ 154 (337)
|.+-.|++.--..+-...+ .-..++.+.+||.+++..+.+..+...|+.++
T Consensus 62 G~~v~s~~QLK~mQEVItL~iFv~Fsvfyl~epl~~~~l~a~~~i~gav~fi 113 (116)
T COG3169 62 GHQVYSAAQLKTMQEVITLAIFVPFSVFYLKEPLRWNYLWAFLLILGAVYFI 113 (116)
T ss_pred hhhhccHHHHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHh
Confidence 3344444443333322222 23567889999999999999999888776653
No 120
>PRK13108 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=51.88 E-value=1.2e+02 Score=29.09 Aligned_cols=24 Identities=13% Similarity=-0.068 Sum_probs=19.4
Q ss_pred cchhhHHHHHHHHHHHHHhhhccc
Q 019698 286 LTIINLFGYGIAIAGVAAYNNHKL 309 (337)
Q Consensus 286 ~t~~~~~G~~li~~gv~l~~~~~~ 309 (337)
++..|++++.+++.|++++.+.++
T Consensus 254 l~~~Q~lSl~~il~gl~~~~~~~~ 277 (460)
T PRK13108 254 IRINSFTSTFVFIGAVVYIILAPK 277 (460)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhhc
Confidence 788999999999999877655443
No 121
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=50.86 E-value=54 Score=24.08 Aligned_cols=44 Identities=18% Similarity=0.037 Sum_probs=36.1
Q ss_pred HHHhhhhhHHHhhhhHhccCCcccchhhHHHHHHHHHHHHHhhhc
Q 019698 263 RVAGVVKDWVVVLFSALLFADTKLTIINLFGYGIAIAGVAAYNNH 307 (337)
Q Consensus 263 ~~~~~~~pv~~~i~~~~~~~e~~~t~~~~~G~~li~~gv~l~~~~ 307 (337)
+-.+-+-.+.+.++.+.+-+.. ++...+.|..+++.|+.+....
T Consensus 62 AAYGGvyI~~sL~W~~~Vdg~~-pdr~D~~Ga~icl~G~~vil~~ 105 (109)
T COG1742 62 AAYGGVYIAASLAWLWVVDGVR-PDRYDWIGAAICLAGVAVILFG 105 (109)
T ss_pred HHhcchHHHHHHHHHHHHcCcC-CcHHHhhhHHHHHhceeeeEeC
Confidence 3445566778889999999999 9999999999999998766554
No 122
>PF07444 Ycf66_N: Ycf66 protein N-terminus; InterPro: IPR010004 This entry represents Ycf66, a protein that is restricted to the chloroplasts of simple plants and algae. It is also found in the cyanobacteria. The function is unknown. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=50.30 E-value=16 Score=25.72 Aligned_cols=28 Identities=18% Similarity=0.275 Sum_probs=22.4
Q ss_pred cchhhHHHHHHHHHHHHHhhhcccchhh
Q 019698 286 LTIINLFGYGIAIAGVAAYNNHKLKKEA 313 (337)
Q Consensus 286 ~t~~~~~G~~li~~gv~l~~~~~~~~~~ 313 (337)
.++..++|+.+++.|..+|..+..+++-
T Consensus 5 ~~~~~iLgi~l~~~~~~Ly~lr~~~Pev 32 (84)
T PF07444_consen 5 FGPSYILGIILILGGLALYFLRFFRPEV 32 (84)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHCcch
Confidence 6889999999999999999765544443
No 123
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=48.79 E-value=27 Score=21.11 Aligned_cols=17 Identities=18% Similarity=0.071 Sum_probs=10.3
Q ss_pred cchhhHHHHHHHHHHHH
Q 019698 286 LTIINLFGYGIAIAGVA 302 (337)
Q Consensus 286 ~t~~~~~G~~li~~gv~ 302 (337)
++|..++=.++++.|++
T Consensus 2 p~wlt~iFsvvIil~If 18 (49)
T PF11044_consen 2 PTWLTTIFSVVIILGIF 18 (49)
T ss_pred chHHHHHHHHHHHHHHH
Confidence 56666666666666653
No 124
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=47.34 E-value=68 Score=28.20 Aligned_cols=50 Identities=8% Similarity=0.126 Sum_probs=40.1
Q ss_pred cHhHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHhhhheeeeecC
Q 019698 109 SVAFAQMLKAIMPVAVFILGVAAGLEVMSCRMLLIMSVISFGVVVASYGE 158 (337)
Q Consensus 109 ~~~~~~ii~~~~Pv~~~l~~~~~~~er~~~~~~~~i~l~~~G~~l~~~~~ 158 (337)
++.++..+...---.+.+++++++.+.++....-+..+.+.|+.+-...+
T Consensus 285 GA~~aatvTTaRKavTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~ysk 334 (367)
T KOG1582|consen 285 GALIAATVTTARKAVTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMYSK 334 (367)
T ss_pred chhHHHHHHHhHhHHHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhcccC
Confidence 45555555555566788999999999999999999999999999876654
No 125
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=46.60 E-value=3.5e+02 Score=27.92 Aligned_cols=45 Identities=9% Similarity=0.114 Sum_probs=31.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHhhhheeee
Q 019698 111 AFAQMLKAIMPVAVFILGVAAGLEVMSCRMLLIMSVISFGVVVAS 155 (337)
Q Consensus 111 ~~~~ii~~~~Pv~~~l~~~~~~~er~~~~~~~~i~l~~~G~~l~~ 155 (337)
+-+.++..++|.-.+.++.+...+|.+...+.+.+..++|.+.+.
T Consensus 11 gRa~il~~l~PFg~af~~a~~~~~~~~~~~~~~~~~~~~G~~t~~ 55 (764)
T TIGR02865 11 GRAVIVSPMAPFGIAFLAAVLLAKKGGDKAFFSALGVLLGAISIQ 55 (764)
T ss_pred hHHHHhcCCCchHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhC
Confidence 455678888999999888887666654555666666666765443
No 126
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=43.03 E-value=28 Score=23.23 Aligned_cols=26 Identities=27% Similarity=0.185 Sum_probs=18.7
Q ss_pred chhhHHHHHHHHHHHHHhhhcccchh
Q 019698 287 TIINLFGYGIAIAGVAAYNNHKLKKE 312 (337)
Q Consensus 287 t~~~~~G~~li~~gv~l~~~~~~~~~ 312 (337)
+-.-.+++-++++|.++|...++++.
T Consensus 3 ~d~iLi~ICVaii~lIlY~iYnr~~~ 28 (68)
T PF05961_consen 3 GDFILIIICVAIIGLILYGIYNRKKT 28 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 44567788888999998887655443
No 127
>PF09852 DUF2079: Predicted membrane protein (DUF2079); InterPro: IPR018650 This entry is represented by Sulfolobus virus STSV1, Orf64. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry contains a family of various integral membrane proteins with no known function.
Probab=39.73 E-value=3.4e+02 Score=25.81 Aligned_cols=121 Identities=15% Similarity=0.137 Sum_probs=59.1
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHhhhcccccCCChhhhhhHhHHHHHHHHHHHHhhhhhhhcccHhHHHHHHHHHHHH
Q 019698 44 FPFPLGLTLLHMVFSSVLCFLLTKVFKVMKVEDGMTLEIYTTSVIPIGAMFAMTLWLGNTAYLYISVAFAQMLKAIMPVA 123 (337)
Q Consensus 44 ~~~p~~~~~~r~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~ii~~~~Pv~ 123 (337)
+|.|.++...|.+.-++-..++.++-++.... .+..+..++.|.++...... ....+.-.....|.+
T Consensus 56 ~Ps~~tLli~Qal~la~~~~pl~~lar~~~~~--------~~~a~~~~~~ylL~p~~~~~-----~~~dFH~~~~avPll 122 (449)
T PF09852_consen 56 FPSPLTLLIVQALLLALGAIPLYRLARRRLLS--------RRLALLIALAYLLSPGLQGA-----NLFDFHPVAFAVPLL 122 (449)
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--------cHHHHHHHHHHHHhHHHHhh-----hhCCCcHHHHHHHHH
Confidence 55689999999987777777776655544211 12444456666555444332 222333333344555
Q ss_pred HHHHHHHhcccccch-----------hhHHHHHHHhhhheeeeecCccchHHHHHHHHHHHHHHHHHH
Q 019698 124 VFILGVAAGLEVMSC-----------RMLLIMSVISFGVVVASYGEININWIGVVYQMGGVVGEALRL 180 (337)
Q Consensus 124 ~~l~~~~~~~er~~~-----------~~~~~i~l~~~G~~l~~~~~~~~~~~G~i~~l~s~~~~a~~~ 180 (337)
...+- .+.++|... ++-.++.++.+|+.+...+ .....|....+.+.+-+.+..
T Consensus 123 ~~~~~-~~~~~r~~~~~~~~ll~llvKEd~~l~v~~~gl~~~~~~--r~~r~g~~~~~~~~~~~~l~~ 187 (449)
T PF09852_consen 123 LWALY-ALERRRWRLFILWALLLLLVKEDLGLTVAGIGLYLLLRR--RKRRWGLALAVFGVAWFILAT 187 (449)
T ss_pred HHHHH-HHHhCcHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHHHHHH
Confidence 44443 333333322 2223334444444443333 112235555555555444444
No 128
>COG1971 Predicted membrane protein [Function unknown]
Probab=39.07 E-value=42 Score=27.67 Aligned_cols=45 Identities=16% Similarity=0.161 Sum_probs=31.5
Q ss_pred chhHHHHHhhhhhHHHhhhhHhccCCcccchhhHHHHH-HHHHHHHH
Q 019698 258 SALTIRVAGVVKDWVVVLFSALLFADTKLTIINLFGYG-IAIAGVAA 303 (337)
Q Consensus 258 ~~~~~~~~~~~~pv~~~i~~~~~~~e~~~t~~~~~G~~-li~~gv~l 303 (337)
-+...+......|+++...+.++-+-. -.+..|+|++ +.+.|..+
T Consensus 39 ia~~fG~f~~i~pliG~~~g~~~s~~i-~~~~~wigf~lL~~lG~~m 84 (190)
T COG1971 39 IALIFGVFQAIMPLIGWFIGKFLSTFI-AEWAHWIGFVLLIILGLKM 84 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 355667778888999988888777666 5677877765 45566543
No 129
>cd01324 cbb3_Oxidase_CcoQ Cytochrome cbb oxidase CcoQ. Cytochrome cbb3 oxidase, the terminal oxidase in the respiratory chains of proteobacteria, is a multi-chain transmembrane protein located in the cell membrane. Like other cytochrome oxidases, it catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. Found exclusively in proteobacteria, cbb3 is believed to be a modern enzyme that has evolved independently to perform a specialized function in microaerobic energy metabolism. The cbb3 operon contains four genes (ccoNOQP or fixNOQP), with ccoN coding for subunit I. Instead of a CuA-containing subunit II analogous to other cytochrome oxidases, cbb3 utilizes subunits ccoO and ccoP, which contain one and two hemes, respectively, to transfer electrons to the binuclear center. ccoQ, the fourth subunit, is a single transmembrane helix protein. It has been shown to protect the core complex from proteolytic degradation by serine proteases. See cd00919, cd01322
Probab=38.88 E-value=41 Score=20.88 Aligned_cols=27 Identities=19% Similarity=0.160 Sum_probs=17.8
Q ss_pred hhhHHHHHHHHHHHHHhhhcccchhhh
Q 019698 288 IINLFGYGIAIAGVAAYNNHKLKKEAS 314 (337)
Q Consensus 288 ~~~~~G~~li~~gv~l~~~~~~~~~~~ 314 (337)
....+-+.++++|++++.+.++++++.
T Consensus 13 ~~~l~~~~~~Figiv~wa~~p~~k~~f 39 (48)
T cd01324 13 SWGLLYLALFFLGVVVWAFRPGRKKAF 39 (48)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcchhH
Confidence 344445578889999888776554443
No 130
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=37.90 E-value=62 Score=25.40 Aligned_cols=26 Identities=19% Similarity=0.175 Sum_probs=15.7
Q ss_pred hhcchhHHHHHhhhhhHHHhhhhHhc
Q 019698 255 SHTSALTIRVAGVVKDWVVVLFSALL 280 (337)
Q Consensus 255 ~~~~~~~~~~~~~~~pv~~~i~~~~~ 280 (337)
..-+....+.+.|+-|.++.+++.++
T Consensus 70 ~EkslL~sA~LvYi~PL~~l~v~~~L 95 (150)
T COG3086 70 EEKSLLKSALLVYIFPLVGLFLGAIL 95 (150)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666677777666665544
No 131
>TIGR00836 amt ammonium transporter. The mechanism of energy coupling, if any, to methyl-NH2 or NH3 uptake by the AmtB protein of E. coli is not entirely clear. NH4+ uniport driven by the pmf, energy independent NH3 facilitation, and NH4+/K+ antiport have been proposed as possible transport mechanisms. In Corynebacterium glutamicum and Arabidopsis thaliana, uptake via the Amt1 homologues of AmtB has been reported to be driven by the pmf.
Probab=37.48 E-value=3.6e+02 Score=25.39 Aligned_cols=54 Identities=11% Similarity=-0.018 Sum_probs=24.8
Q ss_pred HHHHHHHHHhcccccchhhHHHHHHHhhhheeeee-cCccchHHHHHHHHHHHHHHHH
Q 019698 122 VAVFILGVAAGLEVMSCRMLLIMSVISFGVVVASY-GEININWIGVVYQMGGVVGEAL 178 (337)
Q Consensus 122 v~~~l~~~~~~~er~~~~~~~~i~l~~~G~~l~~~-~~~~~~~~G~i~~l~s~~~~a~ 178 (337)
+...+.+++. ++|++......- ++.|.+-+.- .+.-.++...+.++++++..-+
T Consensus 241 l~~~~~~~~~-~gk~~~~~~~nG--~LAGLVaita~a~~v~p~~A~viG~iag~~~~~ 295 (403)
T TIGR00836 241 LTWLLIDWLK-HGKPTLLGACNG--ILAGLVAITPGCGVVTPWGAIIIGLVAGVLCYL 295 (403)
T ss_pred HHHHHHHHHh-cCCCCHHHHHhh--hhhhheeecCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 3334444433 345555443322 2344433332 2333455567777777654333
No 132
>KOG4812 consensus Golgi-associated protein/Nedd4 WW domain-binding protein [General function prediction only]
Probab=36.52 E-value=1.4e+02 Score=25.58 Aligned_cols=72 Identities=13% Similarity=0.169 Sum_probs=34.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhhhhHHHhhhhHhcc---CC---cccchhhHHHHHHHHHHHHHhh
Q 019698 234 LMLTLNCLCTFALNLSVFLVISHTSALTIRVAGVVKDWVVVLFSALLF---AD---TKLTIINLFGYGIAIAGVAAYN 305 (337)
Q Consensus 234 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~i~~~~~~---~e---~~~t~~~~~G~~li~~gv~l~~ 305 (337)
..++.+.+++++.+...|....-..-+.++-.+...-.--.++.|++- .+ .+....-|++-+++++|.++..
T Consensus 161 ~~F~~af~vAflFnwIGFlltycl~tT~agRYGA~~GfGLsLikwilIv~~sd~f~~y~n~q~wLwwi~~vlG~ll~l 238 (262)
T KOG4812|consen 161 GIFMWAFIVAFLFNWIGFLLTYCLTTTHAGRYGAISGFGLSLIKWILIVRFSDDFESYFNGQYWLWWIFLVLGLLLFL 238 (262)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhhccchhhheeeEEeecccccccccccchHHHHHHHHHHHHHHH
Confidence 345555555665555544333333333333333222222222223331 11 1255567888888888877644
No 133
>PF00909 Ammonium_transp: Ammonium Transporter Family; InterPro: IPR024041 This ammonium transporter domain consists of a duplication of 2 structural repeats of five helices each plus one extra C-terminal helix. It has been described as a channel that spans the membrane 11 times [].; PDB: 3B9Z_A 3B9Y_A 3B9W_A 3BHS_A 2B2H_A 2B2J_A 2B2F_A 2B2I_A 2NPG_A 2NUU_E ....
Probab=35.50 E-value=3.8e+02 Score=25.09 Aligned_cols=25 Identities=8% Similarity=-0.093 Sum_probs=12.8
Q ss_pred hHHHHHHHHHHHHH-HHHHHHHHHHH
Q 019698 162 NWIGVVYQMGGVVG-EALRLIFMEIL 186 (337)
Q Consensus 162 ~~~G~i~~l~s~~~-~a~~~v~~~~~ 186 (337)
++...+.+++++.. +-.+..+.+|+
T Consensus 274 p~~A~~iG~iag~i~~~~~~~l~~~~ 299 (399)
T PF00909_consen 274 PWGALLIGAIAGLISYFGVSWLLKRL 299 (399)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHhhhhhhheeccccee
Confidence 45567777766444 33333344444
No 134
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.32 E-value=1.2e+02 Score=22.51 Aligned_cols=37 Identities=16% Similarity=-0.092 Sum_probs=19.7
Q ss_pred hHHHhhhhHhccCCcccchhhHHHHHHHHHHHHHhhh
Q 019698 270 DWVVVLFSALLFADTKLTIINLFGYGIAIAGVAAYNN 306 (337)
Q Consensus 270 pv~~~i~~~~~~~e~~~t~~~~~G~~li~~gv~l~~~ 306 (337)
.++++.++|+.=+-..-+++..+.+.++=.|.-+.+.
T Consensus 56 ilVGa~iG~llD~~agTsPwglIv~lllGf~AG~lnv 92 (116)
T COG5336 56 ILVGAGIGWLLDKFAGTSPWGLIVFLLLGFGAGVLNV 92 (116)
T ss_pred HHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH
Confidence 3566677776533222356666655555555444444
No 135
>PRK06638 NADH:ubiquinone oxidoreductase subunit J; Provisional
Probab=28.77 E-value=3.4e+02 Score=22.55 Aligned_cols=30 Identities=23% Similarity=0.310 Sum_probs=16.0
Q ss_pred hhHhccCCcccchhhHHHHHHH--HHHHHHhhh
Q 019698 276 FSALLFADTKLTIINLFGYGIA--IAGVAAYNN 306 (337)
Q Consensus 276 ~~~~~~~e~~~t~~~~~G~~li--~~gv~l~~~ 306 (337)
+|..++++- .=+....|..+. ++|.+...+
T Consensus 135 iG~~L~t~y-~l~fe~~silLLvAmIGAI~La~ 166 (198)
T PRK06638 135 IGILLFTDY-LLPFELASVLLLVAMVGAIVLAR 166 (198)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhh
Confidence 355566665 556666666543 334444433
No 136
>PF09964 DUF2198: Uncharacterized protein conserved in bacteria (DUF2198); InterPro: IPR019242 This family of various hypothetical archaeal proteins has no known function.
Probab=28.55 E-value=2e+02 Score=19.74 Aligned_cols=52 Identities=12% Similarity=0.174 Sum_probs=27.6
Q ss_pred cccchhhHHHHHHHhhhheeee-ecCccchHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 019698 134 EVMSCRMLLIMSVISFGVVVAS-YGEININWIGVVYQMGGVVGEALRLIFMEILVKR 189 (337)
Q Consensus 134 er~~~~~~~~i~l~~~G~~l~~-~~~~~~~~~G~i~~l~s~~~~a~~~v~~~~~~~~ 189 (337)
.|+|..++.|.++.+. .+..+ ...-..++ . ..++..++......+.++..++
T Consensus 18 trVT~n~~vg~~lt~~-Li~ASvykGyt~~~-~--ii~iD~~Sl~aGf~~a~~m~~~ 70 (74)
T PF09964_consen 18 TRVTYNHYVGTILTVA-LIAASVYKGYTHTW-W--IIFIDAVSLTAGFLYAKKMLKH 70 (74)
T ss_pred hhhhHHHHHHHHHHHH-HHHHHHHhccccch-H--HHHHHHHHHHHHHHHHHHHHHH
Confidence 5999999999987443 33323 22222232 2 2233444455555556665543
No 137
>PF15471 TMEM171: Transmembrane protein family 171
Probab=27.40 E-value=50 Score=28.73 Aligned_cols=21 Identities=14% Similarity=0.308 Sum_probs=17.6
Q ss_pred hhhHHHHHHHHHHHHHhhhcc
Q 019698 288 IINLFGYGIAIAGVAAYNNHK 308 (337)
Q Consensus 288 ~~~~~G~~li~~gv~l~~~~~ 308 (337)
..|+.|-+++++|.+.+-...
T Consensus 161 slQImGPlIVl~GLCFFVVAH 181 (319)
T PF15471_consen 161 SLQIMGPLIVLVGLCFFVVAH 181 (319)
T ss_pred ehhhhhhHHHHHhhhhhheee
Confidence 579999999999998876544
No 138
>KOG4016 consensus Synaptic vesicle protein Synaptogyrin involved in regulation of Ca2+-dependent exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=27.30 E-value=3.3e+02 Score=22.95 Aligned_cols=59 Identities=15% Similarity=0.209 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCchHHHHHHHHHHHHHHHHHHHHH
Q 019698 5 ERRMFREQVLTYAYILLYIALSSGQIFFNKWVLSSKEINFPFPLGLTLLHMVFSSVLCFLLTKV 68 (337)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~p~~~~~~r~~~a~~~l~~~~~~ 68 (337)
++.-+.+.....++.++|.+.. +.+.|+|-.++ .-+.|..-...|..+++.++-++.|.
T Consensus 102 kraVl~Dl~~SalwtflwfvGF--c~l~nqwqvs~---p~~~~~~a~saraaIafsffSilsW~ 160 (233)
T KOG4016|consen 102 KRAVLADLGVSALWAFLWFVGF--CFLANQWQVSK---PKENPLGAGSARAAIAFSFFSILSWG 160 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHhhccC---CCCCCcCcchHHHHHHHHHHHHHHHH
Confidence 3344455555666666665543 46788888774 22334445577888887776666553
No 139
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=27.00 E-value=5.4e+02 Score=24.22 Aligned_cols=20 Identities=15% Similarity=0.233 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHhhhcccc
Q 019698 291 LFGYGIAIAGVAAYNNHKLK 310 (337)
Q Consensus 291 ~~G~~li~~gv~l~~~~~~~ 310 (337)
+.+..+++.|..+|-..++|
T Consensus 418 ~~~~~~~~~g~~~y~~~~~~ 437 (445)
T PRK11357 418 ICAVIVIATGLPAYAFWAKR 437 (445)
T ss_pred HHHHHHHHHhhhHHhheech
Confidence 35788888888777655544
No 140
>PHA03049 IMV membrane protein; Provisional
Probab=26.77 E-value=70 Score=21.27 Aligned_cols=26 Identities=23% Similarity=0.161 Sum_probs=18.3
Q ss_pred chhhHHHHHHHHHHHHHhhhcccchh
Q 019698 287 TIINLFGYGIAIAGVAAYNNHKLKKE 312 (337)
Q Consensus 287 t~~~~~G~~li~~gv~l~~~~~~~~~ 312 (337)
+-...+++.++++|.++|...++++.
T Consensus 3 ~d~~l~iICVaIi~lIvYgiYnkk~~ 28 (68)
T PHA03049 3 GDIILVIICVVIIGLIVYGIYNKKTT 28 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 44556778888889888877655443
No 141
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=26.75 E-value=3.1e+02 Score=26.19 Aligned_cols=22 Identities=18% Similarity=0.341 Sum_probs=15.7
Q ss_pred hhhHHHHHHHHHHHHHhhhccc
Q 019698 288 IINLFGYGIAIAGVAAYNNHKL 309 (337)
Q Consensus 288 ~~~~~G~~li~~gv~l~~~~~~ 309 (337)
.....|.++...|..+|.+.++
T Consensus 416 ~~~~~~~~~~~~g~~~y~~~~~ 437 (473)
T TIGR00905 416 KYLLLGFILYAPGIIFYGRARK 437 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3466788888999877766443
No 142
>PRK10666 ammonium transporter; Provisional
Probab=25.76 E-value=5.8e+02 Score=24.22 Aligned_cols=76 Identities=5% Similarity=-0.170 Sum_probs=34.9
Q ss_pred cccccchhhHHHHHHHhhhheeeee-cCccchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChHHHHHHHhHHHHHH
Q 019698 132 GLEVMSCRMLLIMSVISFGVVVASY-GEININWIGVVYQMGGVVGEALRLIFMEILVKRKGLKLNPISVMYYVSPCSALC 210 (337)
Q Consensus 132 ~~er~~~~~~~~i~l~~~G~~l~~~-~~~~~~~~G~i~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 210 (337)
.+.|++......-++ .|.+-+.- .+.-.++...+.++++++..-....+.|+..| .|+..+...+=....+.+.+.
T Consensus 274 ~~gk~~~~~~~nG~L--aGLVaITa~a~~v~p~~A~iiG~vag~v~~~~~~~l~~~~~-iDD~~~a~~vHgv~Gi~G~l~ 350 (428)
T PRK10666 274 LRGKPSLLGACSGAI--AGLVGVTPACGYVGVGGALIIGVVAGLAGLWGVTMLKRWLR-VDDPCDVFGVHGVCGIVGCIL 350 (428)
T ss_pred HhCCCCHHHHHHHHh--hhhhhcccccccCCHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCCcCccHhhhHhHHHHHHH
Confidence 344666544433332 34333322 23334566777777777766544444454222 232334444434344444433
No 143
>PF15102 TMEM154: TMEM154 protein family
Probab=25.07 E-value=58 Score=25.59 Aligned_cols=23 Identities=13% Similarity=-0.031 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHhhhcccchhh
Q 019698 291 LFGYGIAIAGVAAYNNHKLKKEA 313 (337)
Q Consensus 291 ~~G~~li~~gv~l~~~~~~~~~~ 313 (337)
+++.++++..++++.+.|+|+.|
T Consensus 66 VLLvlLLl~vV~lv~~~kRkr~K 88 (146)
T PF15102_consen 66 VLLVLLLLSVVCLVIYYKRKRTK 88 (146)
T ss_pred HHHHHHHHHHHHheeEEeecccC
Confidence 55555566666666655544443
No 144
>TIGR03644 marine_trans_1 probable ammonium transporter, marine subtype. Members of this protein family are well conserved subclass of putative ammonimum transporters, belonging to the much broader set of ammonium/methylammonium transporter described by TIGR00836. Species with this transporter tend to be marine bacteria. Partial phylogenetic profiling (PPP) picks a member of this protein family as the single best-scoring protein vs. a reference profile for the marine environment Genome Property for a large number of different query genomes. This finding by PPP suggests that this transporter family represents an important adaptation to the marine environment.
Probab=25.04 E-value=5.8e+02 Score=23.99 Aligned_cols=62 Identities=13% Similarity=0.060 Sum_probs=30.2
Q ss_pred HHHHHHHHHHhcccccchhhHHHHHHHhhhheeeee-cCccchHHHHHHHHHHHHHHHHHHHHHHH
Q 019698 121 PVAVFILGVAAGLEVMSCRMLLIMSVISFGVVVASY-GEININWIGVVYQMGGVVGEALRLIFMEI 185 (337)
Q Consensus 121 Pv~~~l~~~~~~~er~~~~~~~~i~l~~~G~~l~~~-~~~~~~~~G~i~~l~s~~~~a~~~v~~~~ 185 (337)
-+...++++... +|++......-. +.|.+-+.- .+.-.++...+.++++++..-....+.||
T Consensus 254 ~l~~~~~~~~~~-gk~~~~~~~nG~--LAGLVaITa~~~~v~p~~A~iiG~iag~v~~~~~~~~~~ 316 (404)
T TIGR03644 254 AIAALLLTKLLF-GKADLTMVLNGA--LAGLVAITAEPLTPSPLAATLIGAVGGVIVVFSIVLLDK 316 (404)
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHH--HhhhhhhccccCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444454443 455554433322 333333332 23334566777777777766555545554
No 145
>PRK12437 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=24.97 E-value=53 Score=28.90 Aligned_cols=21 Identities=19% Similarity=0.265 Sum_probs=17.8
Q ss_pred cchhhHHHHHHHHHHHHHhhh
Q 019698 286 LTIINLFGYGIAIAGVAAYNN 306 (337)
Q Consensus 286 ~t~~~~~G~~li~~gv~l~~~ 306 (337)
+|..|+++..+++.|+.+..+
T Consensus 235 ls~~Q~~sl~~i~~g~~~~~~ 255 (269)
T PRK12437 235 LRIAQVISIPLIIIGIILIIY 255 (269)
T ss_pred hhHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999876643
No 146
>PF07123 PsbW: Photosystem II reaction centre W protein (PsbW); InterPro: IPR009806 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbW found in PSII, where it is a subunit of the oxygen-evolving complex. PsbW appears to have several roles, including guiding PSII biogenesis and assembly, stabilising dimeric PSII [], and facilitating PSII repair after photo-inhibition []. There appears to be two classes of PsbW, class 1 being found predominantly in algae and cyanobacteria, and class 2 being found predominantly in plants. This entry represents class 2 PsbW.; GO: 0015979 photosynthesis, 0009507 chloroplast, 0009523 photosystem II
Probab=24.85 E-value=77 Score=24.53 Aligned_cols=31 Identities=13% Similarity=0.034 Sum_probs=25.1
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 019698 160 NINWIGVVYQMGGVVGEALRLIFMEILVKRK 190 (337)
Q Consensus 160 ~~~~~G~i~~l~s~~~~a~~~v~~~~~~~~~ 190 (337)
+.+.+|.++.=.-.+.|++|.++.+.+-+|+
T Consensus 102 sn~~LgwIL~gVf~lIWslY~~~~~~l~ede 132 (138)
T PF07123_consen 102 SNNLLGWILLGVFGLIWSLYFVYTSTLDEDE 132 (138)
T ss_pred cCchhHHHHHHHHHHHHHHHHhhccccCCCc
Confidence 3457888888888899999999999976544
No 147
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=24.60 E-value=1.3e+02 Score=19.80 Aligned_cols=24 Identities=13% Similarity=0.127 Sum_probs=15.1
Q ss_pred hhHHHHHHHHHHHHHhhhcccchh
Q 019698 289 INLFGYGIAIAGVAAYNNHKLKKE 312 (337)
Q Consensus 289 ~~~~G~~li~~gv~l~~~~~~~~~ 312 (337)
...+-+.+++.|++.+.+.+.+++
T Consensus 13 ~~t~~~~l~fiavi~~ayr~~~K~ 36 (60)
T COG4736 13 WGTIAFTLFFIAVIYFAYRPGKKG 36 (60)
T ss_pred HHHHHHHHHHHHHHHHHhcccchh
Confidence 344556677788877776655444
No 148
>PF08507 COPI_assoc: COPI associated protein; InterPro: IPR013714 Proteins in this family co-localise with COPI vesicle coat proteins []. In yeast it is a Golgi membrane protein involved in vesicular trafficking, interacting with TVP18 [].
Probab=23.97 E-value=3.4e+02 Score=20.88 Aligned_cols=30 Identities=13% Similarity=0.318 Sum_probs=17.0
Q ss_pred HHhhhhHhccCCcccchhhHHHHHHHHHHHHH
Q 019698 272 VVVLFSALLFADTKLTIINLFGYGIAIAGVAA 303 (337)
Q Consensus 272 ~~~i~~~~~~~e~~~t~~~~~G~~li~~gv~l 303 (337)
+-+++|.+.+++. ....+.|..+...|+..
T Consensus 73 fyif~G~l~~~~~--~~~~i~g~~~~~~G~~~ 102 (136)
T PF08507_consen 73 FYIFLGTLCLGQS--ILSIIIGLLLFLVGVIY 102 (136)
T ss_pred HHHHHHHHHHhhH--HHHHHHHHHHHHHHHHH
Confidence 3344555555553 34456666777777653
No 149
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=23.91 E-value=6.9e+02 Score=24.40 Aligned_cols=27 Identities=11% Similarity=-0.187 Sum_probs=14.4
Q ss_pred hhcchhHHHHHhhhhhHHHhhhhHhcc
Q 019698 255 SHTSALTIRVAGVVKDWVVVLFSALLF 281 (337)
Q Consensus 255 ~~~~~~~~~~~~~~~pv~~~i~~~~~~ 281 (337)
.|..+..........|+-+.++|.+.-
T Consensus 342 GRv~si~~~~~~g~~~lGsll~G~la~ 368 (524)
T PF05977_consen 342 GRVFSIYQMVFFGGMPLGSLLWGFLAD 368 (524)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444445556666667776543
No 150
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=23.59 E-value=1.1e+02 Score=18.80 Aligned_cols=20 Identities=5% Similarity=0.090 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHhhhcccc
Q 019698 291 LFGYGIAIAGVAAYNNHKLK 310 (337)
Q Consensus 291 ~~G~~li~~gv~l~~~~~~~ 310 (337)
.+-+.++++|++++.+.+++
T Consensus 15 ~v~~~~~F~gi~~w~~~~~~ 34 (49)
T PF05545_consen 15 TVLFFVFFIGIVIWAYRPRN 34 (49)
T ss_pred HHHHHHHHHHHHHHHHcccc
Confidence 34445667777777665544
No 151
>TIGR01167 LPXTG_anchor LPXTG-motif cell wall anchor domain. A common feature of this proteins containing this domain appears to be a high proportion of charged and zwitterionic residues immediatedly upstream of the LPXTG motif. This model differs from other descriptions of the LPXTG region by including a portion of that upstream charged region.
Probab=23.24 E-value=1.1e+02 Score=16.82 Aligned_cols=17 Identities=18% Similarity=0.145 Sum_probs=9.3
Q ss_pred cchhhHHHHHHHHHHHH
Q 019698 286 LTIINLFGYGIAIAGVA 302 (337)
Q Consensus 286 ~t~~~~~G~~li~~gv~ 302 (337)
-++..++|.+++..+.+
T Consensus 10 ~~~~~~~G~~l~~~~~~ 26 (34)
T TIGR01167 10 NSLLLLLGLLLLGLGGL 26 (34)
T ss_pred cHHHHHHHHHHHHHHHH
Confidence 35566777745444333
No 152
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=22.87 E-value=1e+02 Score=23.76 Aligned_cols=25 Identities=16% Similarity=0.077 Sum_probs=16.2
Q ss_pred cchhHHHHHhhhhhHHHhhhhHhcc
Q 019698 257 TSALTIRVAGVVKDWVVVLFSALLF 281 (337)
Q Consensus 257 ~~~~~~~~~~~~~pv~~~i~~~~~~ 281 (337)
.+....+++.|+-|++..+.+.++-
T Consensus 65 ~~~~~aa~l~Y~lPll~li~g~~l~ 89 (135)
T PF04246_consen 65 SSLLKAAFLVYLLPLLALIAGAVLG 89 (135)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566677777887777766443
No 153
>PF07168 Ureide_permease: Ureide permease; InterPro: IPR009834 This entry represents ureide permease, which transports a wide spectrum of oxo derivatives of heterocyclic nitrogen compounds, including allantoin, uric acid and xanthine, but not adenine. Transport is dependent on glucose and a proton gradient [].
Probab=22.84 E-value=73 Score=28.49 Aligned_cols=19 Identities=0% Similarity=-0.256 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 019698 170 MGGVVGEALRLIFMEILVK 188 (337)
Q Consensus 170 l~s~~~~a~~~v~~~~~~~ 188 (337)
+++.+|++.+...+|-.-|
T Consensus 2 ~itmlcwGSW~nt~kL~~r 20 (336)
T PF07168_consen 2 VITMLCWGSWPNTQKLAER 20 (336)
T ss_pred eeehhhhcChHHHHHHHHh
Confidence 4567788888887776655
No 154
>PF07578 LAB_N: Lipid A Biosynthesis N-terminal domain; InterPro: IPR011499 This domain is found at the N terminus of a group of Chlamydial lipid A biosynthesis proteins. It is also found by itself in a family of proteins of unknown function.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=22.02 E-value=2.7e+02 Score=19.03 Aligned_cols=48 Identities=23% Similarity=0.173 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCCChHHHHHHHhHHHHHHHHHHHHh
Q 019698 169 QMGGVVGEALRLIFMEILVKRKGLKLNPISVMYYVSPCSALCLFIPWIF 217 (337)
Q Consensus 169 ~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~ 217 (337)
++++.+.++...+++--..++++ +-.-....++.++.|..+++.....
T Consensus 2 G~~gq~lF~~Rf~~QW~~SEk~k-~sv~P~~FW~lSl~Gs~lll~Y~i~ 49 (72)
T PF07578_consen 2 GFIGQLLFSSRFIVQWIYSEKAK-KSVVPVAFWYLSLIGSLLLLIYAII 49 (72)
T ss_pred cHHHHHHHHHHHHHHHHHHHHcC-CCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777666655544 3344455666788888887666655
No 155
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=21.93 E-value=6.9e+02 Score=23.74 Aligned_cols=58 Identities=10% Similarity=0.149 Sum_probs=38.4
Q ss_pred HhcccccchhhH--HHHHHHhhhheeeeecCccchHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 019698 130 AAGLEVMSCRML--LIMSVISFGVVVASYGEININWIGVVYQMGGVVGEALRLIFMEILVKR 189 (337)
Q Consensus 130 ~~~~er~~~~~~--~~i~l~~~G~~l~~~~~~~~~~~G~i~~l~s~~~~a~~~v~~~~~~~~ 189 (337)
++.|.|+...|+ +|+.++++-+.+++..++- + ++..+.+.|..|-++-..|.+..+|.
T Consensus 317 ~~~~~~iHpiQY~LVGlAl~lFYlLLLSlSEhi-~-F~~AYliAa~a~i~Li~~Y~~~vl~~ 376 (430)
T PF06123_consen 317 LLSKLRIHPIQYLLVGLALVLFYLLLLSLSEHI-G-FNLAYLIAALACIGLISLYLSSVLKS 376 (430)
T ss_pred HHhcCcccHHHHHHHHHHHHHHHHHHHHHHhhh-c-hHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345556666554 4555566666666666542 2 45567777888888888889988884
No 156
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=21.85 E-value=6e+02 Score=22.99 Aligned_cols=49 Identities=12% Similarity=0.099 Sum_probs=35.4
Q ss_pred hcccHhHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHhhhheee
Q 019698 106 LYISVAFAQMLKAIMPVAVFILGVAAGLEVMSCRMLLIMSVISFGVVVA 154 (337)
Q Consensus 106 ~~~~~~~~~ii~~~~Pv~~~l~~~~~~~er~~~~~~~~i~l~~~G~~l~ 154 (337)
.-+|.-+.++..-..-+-+.+++..+.+++++...|.|..++..|+..-
T Consensus 265 ~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~ 313 (349)
T KOG1443|consen 265 SRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLH 313 (349)
T ss_pred eeccceeeeHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHh
Confidence 3445444455555556667778888888888888888888888887765
No 157
>KOG1623 consensus Multitransmembrane protein [General function prediction only]
Probab=21.84 E-value=3.9e+02 Score=23.11 Aligned_cols=79 Identities=15% Similarity=0.201 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHhcccccchhhHHHHHHHhhhheee-----eecCcc-chHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 019698 120 MPVAVFILGVAAGLEVMSCRMLLIMSVISFGVVVA-----SYGEIN-INWIGVVYQMGGVVGEALRLIFMEILVKRKGLK 193 (337)
Q Consensus 120 ~Pv~~~l~~~~~~~er~~~~~~~~i~l~~~G~~l~-----~~~~~~-~~~~G~i~~l~s~~~~a~~~v~~~~~~~~~~~~ 193 (337)
..+.+.++-+.-.|+| +...+..+.++.+|+... ..++.+ .+..|.+.+..+...+|.=.-..|+..|++..+
T Consensus 79 e~~Yi~~f~~ya~~k~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~lG~vc~~~nI~~~~sPL~~m~~VIktkSvE 157 (243)
T KOG1623|consen 79 ETVYISIFLYYAPKKK-TVKIVLALVLGVIGLIILLTLLLFHDPERRVSVLGIVCAVFNISMFAAPLSVIRKVIKTKSVE 157 (243)
T ss_pred HHHHHHHHheecCchh-eeEeeehHHHHHHHHHHHHHHHhcCCcceeeeeeehhhhhhhHHhhhccHHhhhhheecCcee
Confidence 3444444444444554 333333444444443332 112222 456899999999999998888888888766444
Q ss_pred CChHHH
Q 019698 194 LNPISV 199 (337)
Q Consensus 194 ~~~~~~ 199 (337)
.-|..+
T Consensus 158 ~mPf~L 163 (243)
T KOG1623|consen 158 YMPFPL 163 (243)
T ss_pred eechHH
Confidence 444444
No 158
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=21.05 E-value=84 Score=27.76 Aligned_cols=48 Identities=6% Similarity=-0.006 Sum_probs=39.1
Q ss_pred HhhhhhHHHhhhhHhccCCcccchhhHHHHHHHHHHHHHhhhcccchhh
Q 019698 265 AGVVKDWVVVLFSALLFADTKLTIINLFGYGIAIAGVAAYNNHKLKKEA 313 (337)
Q Consensus 265 ~~~~~pv~~~i~~~~~~~e~~~t~~~~~G~~li~~gv~l~~~~~~~~~~ 313 (337)
...-.++..++.++++.+.+ -+..|+...+++-+|+++-...+.++.+
T Consensus 97 fRsgsll~nM~~g~il~~k~-Ys~~Qy~Sv~~iTiGiiIcTl~s~~d~~ 144 (330)
T KOG1583|consen 97 FRSGSLLANMILGWILLGKR-YSLRQYSSVLMITIGIIICTLFSSKDGR 144 (330)
T ss_pred EecCcHHHHHHHHHHhccce-eehhhhhhHHhhhhhheeEEeecCcchh
Confidence 34455678889999999999 9999999999999999887766554433
Done!