Query 019698
Match_columns 337
No_of_seqs 118 out of 1429
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 05:47:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019698.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019698hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i68_A Protein EMRE; transmemb 98.7 1.4E-08 4.8E-13 78.2 6.0 67 241-308 38-105 (137)
2 3b5d_A Multidrug transporter E 98.4 1.4E-06 4.8E-11 64.6 8.2 70 88-157 34-104 (110)
3 2i68_A Protein EMRE; transmemb 98.2 1.8E-06 6.3E-11 66.3 6.5 69 88-156 34-103 (137)
4 3b5d_A Multidrug transporter E 98.2 8.3E-06 2.8E-10 60.4 8.7 64 243-307 40-104 (110)
5 3l1l_A Arginine/agmatine antip 55.2 21 0.0007 32.2 6.2 24 289-312 409-432 (445)
6 3rko_J NADH-quinone oxidoreduc 17.4 3.7E+02 0.013 21.0 8.7 31 275-306 128-160 (184)
7 2jp3_A FXYD domain-containing 15.9 1E+02 0.0035 19.7 2.4 18 290-307 22-39 (67)
8 2jo1_A Phospholemman; FXYD1, N 14.7 82 0.0028 20.3 1.7 42 291-332 22-63 (72)
9 3b9w_A Ammonium transporter fa 14.4 6.5E+02 0.022 22.4 16.5 191 57-256 151-346 (407)
10 2b2h_A AMT-1, ammonium transpo 13.8 6.7E+02 0.023 22.3 17.5 201 56-261 158-370 (399)
No 1
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.73 E-value=1.4e-08 Score=78.18 Aligned_cols=67 Identities=18% Similarity=0.127 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHhhcchhHHHHH-hhhhhHHHhhhhHhccCCcccchhhHHHHHHHHHHHHHhhhcc
Q 019698 241 LCTFALNLSVFLVISHTSALTIRVA-GVVKDWVVVLFSALLFADTKLTIINLFGYGIAIAGVAAYNNHK 308 (337)
Q Consensus 241 i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~pv~~~i~~~~~~~e~~~t~~~~~G~~li~~gv~l~~~~~ 308 (337)
++..+.++.+.+++++.++..+..+ ..+.|++++++|+++|+|+ +|+.+++|+++++.|+++.+..+
T Consensus 38 ~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~-ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 38 ICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQR-LDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp HHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHHHHHhcCC
Confidence 3444455567788999999988887 8999999999999999999 99999999999999999987654
No 2
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.37 E-value=1.4e-06 Score=64.60 Aligned_cols=70 Identities=16% Similarity=0.211 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHhhhhhhhcccHhHHHHH-HHHHHHHHHHHHHHhcccccchhhHHHHHHHhhhheeeeec
Q 019698 88 IPIGAMFAMTLWLGNTAYLYISVAFAQML-KAIMPVAVFILGVAAGLEVMSCRMLLIMSVISFGVVVASYG 157 (337)
Q Consensus 88 ~~~~~~~~~~~~~~~~al~~~~~~~~~ii-~~~~Pv~~~l~~~~~~~er~~~~~~~~i~l~~~G~~l~~~~ 157 (337)
+....+++....+...++++.|.+.+..+ .+..|+++.+++++++||+++..++.|+.+++.|+.+....
T Consensus 34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~ 104 (110)
T 3b5d_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 44455688899999999999999999888 89999999999999999999999999999999999877553
No 3
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.24 E-value=1.8e-06 Score=66.31 Aligned_cols=69 Identities=16% Similarity=0.235 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHhhhhhhhcccHhHHHHH-HHHHHHHHHHHHHHhcccccchhhHHHHHHHhhhheeeee
Q 019698 88 IPIGAMFAMTLWLGNTAYLYISVAFAQML-KAIMPVAVFILGVAAGLEVMSCRMLLIMSVISFGVVVASY 156 (337)
Q Consensus 88 ~~~~~~~~~~~~~~~~al~~~~~~~~~ii-~~~~Pv~~~l~~~~~~~er~~~~~~~~i~l~~~G~~l~~~ 156 (337)
+...++++....+++.+++..|++.+..+ .++.|++++++++++++|++++.+++|+.++++|+.+...
T Consensus 34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~ 103 (137)
T 2i68_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINL 103 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 44555688999999999999999999888 8999999999999999999999999999999999988754
No 4
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.18 E-value=8.3e-06 Score=60.39 Aligned_cols=64 Identities=17% Similarity=0.059 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHhhcchhHHHHH-hhhhhHHHhhhhHhccCCcccchhhHHHHHHHHHHHHHhhhc
Q 019698 243 TFALNLSVFLVISHTSALTIRVA-GVVKDWVVVLFSALLFADTKLTIINLFGYGIAIAGVAAYNNH 307 (337)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~pv~~~i~~~~~~~e~~~t~~~~~G~~li~~gv~l~~~~ 307 (337)
.....+.+.+.+|+.+...+... ..+.|+.+.+.++++|||+ +|+.+++|+.+++.|+...+..
T Consensus 40 ~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~-~s~~~~~Gi~lIi~Gv~~l~~~ 104 (110)
T 3b5d_A 40 YCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQR-LDLPAIIGMMLICAGVLIINLL 104 (110)
T ss_pred HHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHHHHHhcC
Confidence 33444556678999999998777 8999999999999999999 9999999999999999987654
No 5
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=55.22 E-value=21 Score=32.21 Aligned_cols=24 Identities=8% Similarity=0.048 Sum_probs=16.8
Q ss_pred hhHHHHHHHHHHHHHhhhcccchh
Q 019698 289 INLFGYGIAIAGVAAYNNHKLKKE 312 (337)
Q Consensus 289 ~~~~G~~li~~gv~l~~~~~~~~~ 312 (337)
..+.|..+++.|..+|...+++++
T Consensus 409 ~~~~~~~~~~~g~~~y~~~~~~~~ 432 (445)
T 3l1l_A 409 EVMWSFVTLMVITAMYALNYNRLH 432 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcc
Confidence 456688888889888876554433
No 6
>3rko_J NADH-quinone oxidoreductase subunit J; complex I, proton pump, membrane protein, Na ubiquinone, cytoplasmic membrane; HET: LFA CA7; 3.00A {Escherichia coli}
Probab=17.38 E-value=3.7e+02 Score=21.01 Aligned_cols=31 Identities=10% Similarity=0.057 Sum_probs=19.9
Q ss_pred hhhHhccCCcccchhhHHHHHHH--HHHHHHhhh
Q 019698 275 LFSALLFADTKLTIINLFGYGIA--IAGVAAYNN 306 (337)
Q Consensus 275 i~~~~~~~e~~~t~~~~~G~~li--~~gv~l~~~ 306 (337)
-+|..++++- .=+-+..|..+. ++|.+...+
T Consensus 128 ~iG~~Lft~Y-~lpFElaSvlLLvAmIGAIvLar 160 (184)
T 3rko_J 128 AVGITLFGPY-VLAVELASMLLLAGLVVAFHVGR 160 (184)
T ss_dssp HHHHHHTTTS-HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHh
Confidence 4666777777 777888887664 344444443
No 7
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=15.87 E-value=1e+02 Score=19.66 Aligned_cols=18 Identities=33% Similarity=0.370 Sum_probs=10.9
Q ss_pred hHHHHHHHHHHHHHhhhc
Q 019698 290 NLFGYGIAIAGVAAYNNH 307 (337)
Q Consensus 290 ~~~G~~li~~gv~l~~~~ 307 (337)
.+++.++.++|+++..-.
T Consensus 22 LifA~vLfi~GI~iilS~ 39 (67)
T 2jp3_A 22 LIFGGLLCIAGIALALSG 39 (67)
T ss_dssp HHHHHHHHHHHHHHHHTT
T ss_pred hhhHHHHHHHHHHHHHcC
Confidence 455666777777665443
No 8
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=14.73 E-value=82 Score=20.34 Aligned_cols=42 Identities=7% Similarity=0.033 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhhcccchhhhhhcccccccccccccccc
Q 019698 291 LFGYGIAIAGVAAYNNHKLKKEASRAISDDSQQTQLTATTTS 332 (337)
Q Consensus 291 ~~G~~li~~gv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (337)
+++.++.++|+++..-.+-+-+.+++++.-.+...+..-.+|
T Consensus 22 ifA~vLfi~GI~iilS~KckCk~~qk~r~~~p~~e~g~~~~~ 63 (72)
T 2jo1_A 22 VIAGILFILGILIVLSRRCRCKFNQQQRTGEPDEEEGTFRSS 63 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCTTTSSSCCCTTTSTHHHH
T ss_pred HHHHHHHHHHHHHHHcCccccCCCCCCCCCCCccccccHHHH
No 9
>3b9w_A Ammonium transporter family; membrane protein, ammonia transport, rhesus protein, transpo protein; HET: BOG; 1.30A {Nitrosomonas europaea} PDB: 3bhs_A 3b9y_A* 3b9z_A*
Probab=14.37 E-value=6.5e+02 Score=22.43 Aligned_cols=191 Identities=9% Similarity=-0.066 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhhcccccCCChhhhhhHhHHHHHHHHHHHHhhhhhhhcccHhHHHHHHHHH-----HHHHHHHHHHh
Q 019698 57 FSSVLCFLLTKVFKVMKVEDGMTLEIYTTSVIPIGAMFAMTLWLGNTAYLYISVAFAQMLKAIM-----PVAVFILGVAA 131 (337)
Q Consensus 57 ~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~ii~~~~-----Pv~~~l~~~~~ 131 (337)
.+.+....++..++++..+++ ...+-........++.-.....+|-++...+.....+++... -+..+++++++
T Consensus 151 ~~aLa~a~~LG~R~~~~~~~~-~~~hn~~~~~lGt~lLW~GWfGFN~Gl~~~~~~~~a~~NT~lAaaag~l~~~~~~~~~ 229 (407)
T 3b9w_A 151 YFGLGVSIALTTAAQRAQPIE-SDATSDRFSMLGSMVLWLFWPSFATAIVPFEQMPQTIVNTLLALCGATLATYFLSALF 229 (407)
T ss_dssp HHHHHHHHHHCCHHHHTSCCC-CCHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccCCCCc-CCCCCHHHHHHHHHHHHHHHHhhhhhhccchhhHHHHHHhHHHHHHHHHHHHHHHHHH
Q ss_pred cccccchhhHHHHHHHhhhheeeeecCccchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChHHHHHHHhHHHHHHH
Q 019698 132 GLEVMSCRMLLIMSVISFGVVVASYGEININWIGVVYQMGGVVGEALRLIFMEILVKRKGLKLNPISVMYYVSPCSALCL 211 (337)
Q Consensus 132 ~~er~~~~~~~~i~l~~~G~~l~~~~~~~~~~~G~i~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l 211 (337)
.+.|++......-.+ ..++.+....+.-.++...+.++++++..-....+.|+.++++- ++++.--.......+.+.-
T Consensus 230 ~~gK~~~~~~~nG~L-AGLVAITa~~~~v~p~~A~iIG~iaG~i~~~~~~~l~~~l~~~l-~iDD~l~a~~vHgv~Gi~G 307 (407)
T 3b9w_A 230 HKGKASIVDMANAAL-AGGVAIGSVCNIVGPVGAFVIGLLGGAISVVGFVFIQPMLESKA-KTIDTCGVHNLHGLPGLLG 307 (407)
T ss_dssp TTTCCCHHHHHHHTT-HHHHHHTTTTTTSCHHHHHHHHHHHHHHHHHHHHTHHHHHHHHS-CCCCTTCHHHHTTHHHHHH
T ss_pred hCCCCCHHHHHHhhh-hhhheeccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCCCCCCeecchHHHHHH
Q ss_pred HHHHHhhcccccccccccCccchHHHHHHHHHHHHHHHHHHHHhh
Q 019698 212 FIPWIFLEKPKMDALETWHFPPLMLTLNCLCTFALNLSVFLVISH 256 (337)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 256 (337)
.+...++...... .+..-+......+....+...+.+++
T Consensus 308 ~l~~glfa~~~~~------~Ql~g~~~~~~~s~v~~~i~~~il~~ 346 (407)
T 3b9w_A 308 GFSAILIVPGIAV------AQLTGIGITLALALIGGVIAGALIKL 346 (407)
T ss_dssp HHHHHHHSTTCHH------HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHccCCcH------HHHHHHHHHHHHHHHHHHHHHHHHhC
No 10
>2b2h_A AMT-1, ammonium transporter; membrane protein, transport protein; 1.54A {Archaeoglobus fulgidus} PDB: 2b2f_A 2b2i_A 2b2j_A
Probab=13.80 E-value=6.7e+02 Score=22.27 Aligned_cols=201 Identities=8% Similarity=-0.025 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhhcccccCCChhhhhhHhHHHHHHHHHHHHhhhhhhhcccHh--------HHHHHHHHHHHHHHHH
Q 019698 56 VFSSVLCFLLTKVFKVMKVEDGMTLEIYTTSVIPIGAMFAMTLWLGNTAYLYISVA--------FAQMLKAIMPVAVFIL 127 (337)
Q Consensus 56 ~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~--------~~~ii~~~~Pv~~~l~ 127 (337)
..+....+...+..++++.+.+.+.+.--..+..+|.+..-.-++.+.+=...... +..+-.+..-+..+++
T Consensus 158 ~~gG~~aL~~a~~LG~R~g~~~~~~~~hn~~~~~lG~~lLW~GWfGFN~GS~l~~~~~a~~a~~nT~lAaaag~l~~~~~ 237 (399)
T 2b2h_A 158 ISSGFAALAVAMTIGKRAGFEEYSIEPHSIPLTLIGAALLWFGWFGFNGGSALAANDVAINAVVVTNTSAAVAGFVWMVI 237 (399)
T ss_dssp HHHHHHHHHHHHHHCCCTTTTTSCCCCSCHHHHHHHHHHHHHHHHHHHHGGGSSSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred echhHHHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhcHHhhccccchhhHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhcccccchhhHHHHHHHhhhheeeeecCccchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChHHHHHHHhHHH
Q 019698 128 GVAAGLEVMSCRMLLIMSVISFGVVVASYGEININWIGVVYQMGGVVGEALRLIFMEILVKRKGLKLNPISVMYYVSPCS 207 (337)
Q Consensus 128 ~~~~~~er~~~~~~~~i~l~~~G~~l~~~~~~~~~~~G~i~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (337)
+++. +|++......-.+ ...+.+....+.-.++...+.++++++..-....+.+|+ +.|+..+...+=....+.+
T Consensus 238 ~~~~--gk~~~~~~~nG~l-AGLVaITa~~~~v~p~~A~iiG~iag~i~~~~~~l~~kl--~iDD~l~a~~vHgv~Gi~G 312 (399)
T 2b2h_A 238 GWIK--GKPGSLGIVSGAI-AGLAAITPAAGFVDVKGAIVIGLVAGIVCYLAMDFRIKK--KIDESLDAWAIHGIGGLWG 312 (399)
T ss_dssp HHHH--SCCCHHHHHHHHH-HHHHHHTTTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHT--TCCCTTCHHHHHHHHHHHH
T ss_pred HHHH--cCCCHHHHHHHHH-HhhhhhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHc--CCCCCCCceeccchhhHHH
Q ss_pred HHHHHHHHHhh----cccccccccccCccchHHHHHHHHHHHHHHHHHHHHhhcchhH
Q 019698 208 ALCLFIPWIFL----EKPKMDALETWHFPPLMLTLNCLCTFALNLSVFLVISHTSALT 261 (337)
Q Consensus 208 ~i~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 261 (337)
.+..-+...-. +........+...+..-+......+....+...+.++++.+.+
T Consensus 313 ~l~~glfa~~~~~g~~Gl~~g~~~ql~~Ql~g~~~~~~~~~v~~~i~~~il~~~~glR 370 (399)
T 2b2h_A 313 SVAVGILANPEVNGYAGLLFGNPQLLVSQLIAVASTTAYAFLVTLILAKAVDAAVGLR 370 (399)
T ss_dssp HHHHHHHCCHHHHSCCCGGGTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSB
T ss_pred HHHHHHHccccccCCCccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Done!