Query 019698
Match_columns 337
No_of_seqs 118 out of 1429
Neff 9.7
Searched_HMMs 13730
Date Mon Mar 25 05:47:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019698.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/019698hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 26.3 1.5E+02 0.011 23.6 12.3 19 172-190 68-86 (447)
2 d2e74g1 f.23.26.1 (G:9-35) Pet 18.5 50 0.0036 15.2 2.9 19 164-182 3-21 (27)
3 d1iwga8 f.35.1.1 (A:513-566,A: 9.7 3.1E+02 0.023 19.8 10.4 29 271-300 95-123 (222)
4 d1iwga7 f.35.1.1 (A:7-37,A:331 7.8 3.6E+02 0.026 19.1 5.8 40 262-302 68-107 (199)
5 d1u7ga_ f.44.1.1 (A:) Ammonium 7.6 5.1E+02 0.037 20.7 20.2 52 131-184 249-301 (383)
6 d1xmea1 f.24.1.1 (A:14-562) Ba 4.0 1.7E+02 0.012 25.2 1.8 17 288-304 455-471 (549)
7 d2h5na1 a.287.1.2 (A:1-132) Hy 3.9 3E+02 0.022 17.0 2.5 28 147-175 89-116 (132)
8 d3dtub2 f.17.2.1 (B:30-129) Ba 3.9 1.7E+02 0.012 18.4 1.4 19 291-309 36-54 (100)
9 d1uptb_ a.193.1.1 (B:) Golgi a 3.6 2.6E+02 0.019 15.7 1.7 22 125-146 11-32 (58)
10 d1r3jc_ f.14.1.1 (C:) Potassiu 2.9 3.9E+02 0.028 16.4 2.5 17 289-305 67-83 (103)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=26.30 E-value=1.5e+02 Score=23.56 Aligned_cols=19 Identities=11% Similarity=0.097 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHhhhc
Q 019698 172 GVVGEALRLIFMEILVKRK 190 (337)
Q Consensus 172 s~~~~a~~~v~~~~~~~~~ 190 (337)
..+.+++......++.++.
T Consensus 68 ~~~~~~~~~~~~G~l~Dr~ 86 (447)
T d1pw4a_ 68 ISIAYGFSKFIMGSVSDRS 86 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHc
Confidence 3444555556666666543
No 2
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=18.48 E-value=50 Score=15.21 Aligned_cols=19 Identities=21% Similarity=0.224 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 019698 164 IGVVYQMGGVVGEALRLIF 182 (337)
Q Consensus 164 ~G~i~~l~s~~~~a~~~v~ 182 (337)
.|.+..-+++++||.|.-+
T Consensus 3 lgli~~tl~glf~aayqqy 21 (27)
T d2e74g1 3 LGLVFATLGGLFYAAYQQY 21 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred eeehHHHHHHHHHHHHHHh
Confidence 5778888888888886543
No 3
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=9.68 E-value=3.1e+02 Score=19.83 Aligned_cols=29 Identities=17% Similarity=0.007 Sum_probs=21.3
Q ss_pred HHHhhhhHhccCCcccchhhHHHHHHHHHH
Q 019698 271 WVVVLFSALLFADTKLTIINLFGYGIAIAG 300 (337)
Q Consensus 271 v~~~i~~~~~~~e~~~t~~~~~G~~li~~g 300 (337)
+.+.+.+..+.+.+ ++....+|.++.+..
T Consensus 95 ~~~~~~~l~~~g~~-~~~~~~~g~i~l~Gi 123 (222)
T d1iwga8 95 VIGALLAATFRGLT-NDVYFQVGLLTTIGL 123 (222)
T ss_dssp HHHHHHHHHHTTCC-BCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCc-hhhhhcccccchhhh
Confidence 34566777788888 999888888774443
No 4
>d1iwga7 f.35.1.1 (A:7-37,A:331-498) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=7.76 E-value=3.6e+02 Score=19.07 Aligned_cols=40 Identities=18% Similarity=0.196 Sum_probs=24.8
Q ss_pred HHHHhhhhhHHHhhhhHhccCCcccchhhHHHHHHHHHHHH
Q 019698 262 IRVAGVVKDWVVVLFSALLFADTKLTIINLFGYGIAIAGVA 302 (337)
Q Consensus 262 ~~~~~~~~pv~~~i~~~~~~~e~~~t~~~~~G~~li~~gv~ 302 (337)
.......-.+...+....+++.+ ++.....+..+.+....
T Consensus 68 i~~~~i~~~i~~~~~~m~~~g~~-l~~~s~~~~~i~igi~v 107 (199)
T d1iwga7 68 IPTIAVPVVLLGTFAVLAAFGFS-INTLTMFGMVLAIGLLV 107 (199)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCC-SCHHHHHHHHHHHHHHH
T ss_pred eeccccchhhHHHHHHhhcCCCc-hHHHHHHHHHHHHHHhc
Confidence 33334444445555556778888 88888777776665544
No 5
>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]}
Probab=7.63 E-value=5.1e+02 Score=20.67 Aligned_cols=52 Identities=8% Similarity=-0.183 Sum_probs=22.9
Q ss_pred hcccccchhhHHHHHHHhhhheeeeec-CccchHHHHHHHHHHHHHHHHHHHHHH
Q 019698 131 AGLEVMSCRMLLIMSVISFGVVVASYG-EININWIGVVYQMGGVVGEALRLIFME 184 (337)
Q Consensus 131 ~~~er~~~~~~~~i~l~~~G~~l~~~~-~~~~~~~G~i~~l~s~~~~a~~~v~~~ 184 (337)
+.++|.+......-. +.|.+-+.-. +.-.++...+.+.++++..-....+.|
T Consensus 249 ~~~~k~~~~~~~nG~--LaGLVaita~~~~v~p~~A~~iG~i~g~i~~~~~~~l~ 301 (383)
T d1u7ga_ 249 ALRGLPSLLGACSGA--IAGLVGVTPACGYIGVGGALIIGVVAGLAGLWGVTMLK 301 (383)
T ss_dssp HHHSSCCHHHHHHHH--HHHHHHHTTTTTTSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCCCHHHHHHHh--hhhhhhcccCccccchhhHHHHHhhccHHHHHHHHHHH
Confidence 445566655544322 2333332222 222344456666666554433333333
No 6
>d1xmea1 f.24.1.1 (A:14-562) Bacterial ba3 type cytochrome c oxidase subunit I {Thermus thermophilus [TaxId: 274]}
Probab=4.02 E-value=1.7e+02 Score=25.18 Aligned_cols=17 Identities=6% Similarity=0.266 Sum_probs=10.9
Q ss_pred hhhHHHHHHHHHHHHHh
Q 019698 288 IINLFGYGIAIAGVAAY 304 (337)
Q Consensus 288 ~~~~~G~~li~~gv~l~ 304 (337)
....+|..+..+|..++
T Consensus 455 ~~~~igg~i~~~g~l~f 471 (549)
T d1xmea1 455 VFNVLAGIVLLVALLLF 471 (549)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33566777777776554
No 7
>d2h5na1 a.287.1.2 (A:1-132) Hypothetical protein PG1108 {Porphyromonas gingivalis [TaxId: 837]}
Probab=3.93 E-value=3e+02 Score=17.04 Aligned_cols=28 Identities=25% Similarity=0.402 Sum_probs=18.8
Q ss_pred HhhhheeeeecCccchHHHHHHHHHHHHH
Q 019698 147 ISFGVVVASYGEININWIGVVYQMGGVVG 175 (337)
Q Consensus 147 ~~~G~~l~~~~~~~~~~~G~i~~l~s~~~ 175 (337)
.-.|+++.+.++...|-.. +|.+++.+|
T Consensus 89 sylgvimasdgdiddnela-lwtlistlc 116 (132)
T d2h5na1 89 SYLGVIMASDGDIDDNELA-LWTLISTLC 116 (132)
T ss_dssp HHHHHHSCBTTBCCHHHHH-HHHHHHHHH
T ss_pred HHhhheeccCCCCCccHhH-HHHHHHHHh
Confidence 4567778888877666444 667776665
No 8
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=3.91 E-value=1.7e+02 Score=18.39 Aligned_cols=19 Identities=11% Similarity=0.163 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHhhhccc
Q 019698 291 LFGYGIAIAGVAAYNNHKL 309 (337)
Q Consensus 291 ~~G~~li~~gv~l~~~~~~ 309 (337)
...+.+.+.+...|...+.
T Consensus 36 ~~~I~~~V~~~l~~~~~~~ 54 (100)
T d3dtub2 36 IAAITIFVTLLILYAVWRF 54 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhh
Confidence 3444445555555544433
No 9
>d1uptb_ a.193.1.1 (B:) Golgi autoantigen, golgin-245 {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.59 E-value=2.6e+02 Score=15.73 Aligned_cols=22 Identities=9% Similarity=0.168 Sum_probs=15.2
Q ss_pred HHHHHHhcccccchhhHHHHHH
Q 019698 125 FILGVAAGLEVMSCRMLLIMSV 146 (337)
Q Consensus 125 ~l~~~~~~~er~~~~~~~~i~l 146 (337)
+++.++..+|..+..++++.++
T Consensus 11 vLfeYMmG~E~~tlaKVi~av~ 32 (58)
T d1uptb_ 11 VLFEYMMGRETKTMAKVITTVL 32 (58)
T ss_dssp HHHHHHTTSSHHHHHHHHHHHT
T ss_pred HHHHHHcCcchhHHHHHHHHHH
Confidence 4566777777777777776654
No 10
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=2.90 E-value=3.9e+02 Score=16.42 Aligned_cols=17 Identities=12% Similarity=0.301 Sum_probs=10.3
Q ss_pred hhHHHHHHHHHHHHHhh
Q 019698 289 INLFGYGIAIAGVAAYN 305 (337)
Q Consensus 289 ~~~~G~~li~~gv~l~~ 305 (337)
.++++...++.|+.++.
T Consensus 67 gr~~~~~~~~~Gi~~~~ 83 (103)
T d1r3jc_ 67 GRCVAVVVMVAGITSFG 83 (103)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 36666666666665543
Done!