Query 019699
Match_columns 337
No_of_seqs 353 out of 2652
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 03:50:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019699.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019699hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02823 spermine synthase 100.0 7.2E-66 1.6E-70 493.6 34.2 330 3-333 3-335 (336)
2 PRK00536 speE spermidine synth 100.0 1.2E-62 2.5E-67 455.3 24.0 258 30-312 1-258 (262)
3 PLN02366 spermidine synthase 100.0 1.6E-59 3.4E-64 445.6 29.0 283 26-313 13-305 (308)
4 PRK00811 spermidine synthase; 100.0 3.9E-59 8.4E-64 439.6 29.2 278 28-311 2-283 (283)
5 COG0421 SpeE Spermidine syntha 100.0 3E-58 6.5E-63 430.3 26.4 277 28-311 2-281 (282)
6 TIGR00417 speE spermidine synt 100.0 1.4E-53 3E-58 399.5 27.7 268 31-305 1-270 (270)
7 PF01564 Spermine_synth: Sperm 100.0 4.3E-53 9.4E-58 390.7 24.8 234 30-268 1-239 (246)
8 PRK03612 spermidine synthase; 100.0 1.1E-49 2.4E-54 403.6 23.6 289 30-334 222-518 (521)
9 PRK01581 speE spermidine synth 100.0 2.4E-47 5.2E-52 364.8 24.3 259 5-272 50-319 (374)
10 KOG1562 Spermidine synthase [A 100.0 7.2E-48 1.6E-52 352.9 12.2 282 22-312 36-333 (337)
11 COG4262 Predicted spermidine s 100.0 2E-45 4.3E-50 344.3 17.5 272 39-327 227-502 (508)
12 PRK04457 spermidine synthase; 100.0 1.6E-28 3.4E-33 229.1 24.8 215 51-281 10-232 (262)
13 COG2521 Predicted archaeal met 99.7 2.6E-16 5.6E-21 141.1 14.3 170 70-246 102-274 (287)
14 PF12847 Methyltransf_18: Meth 99.5 1.9E-14 4.1E-19 116.0 8.4 109 103-219 2-111 (112)
15 KOG2352 Predicted spermine/spe 99.5 8E-14 1.7E-18 137.1 7.7 170 87-269 273-458 (482)
16 PF13659 Methyltransf_26: Meth 99.4 6.1E-13 1.3E-17 108.1 10.3 110 104-218 2-114 (117)
17 PF05175 MTS: Methyltransferas 99.4 1.4E-12 3.1E-17 114.0 9.0 129 102-248 31-160 (170)
18 COG4123 Predicted O-methyltran 99.4 2.6E-11 5.6E-16 111.4 17.5 140 91-241 33-185 (248)
19 COG4122 Predicted O-methyltran 99.4 8.6E-12 1.9E-16 112.9 13.6 106 100-218 57-165 (219)
20 PRK00107 gidB 16S rRNA methylt 99.4 2.4E-11 5.2E-16 108.0 16.2 157 87-266 28-186 (187)
21 PF01596 Methyltransf_3: O-met 99.4 5.5E-12 1.2E-16 113.6 11.8 105 101-218 44-154 (205)
22 PRK00121 trmB tRNA (guanine-N( 99.3 3.4E-11 7.3E-16 108.2 15.5 129 102-241 40-172 (202)
23 TIGR00091 tRNA (guanine-N(7)-) 99.3 3E-11 6.6E-16 107.8 15.0 130 101-241 15-148 (194)
24 PLN02781 Probable caffeoyl-CoA 99.3 2.9E-11 6.2E-16 111.2 14.6 104 101-217 67-176 (234)
25 PRK14966 unknown domain/N5-glu 99.3 1.9E-10 4E-15 113.2 19.5 191 55-266 209-418 (423)
26 PLN02476 O-methyltransferase 99.3 7.4E-11 1.6E-15 110.7 15.6 106 100-218 116-227 (278)
27 TIGR00138 gidB 16S rRNA methyl 99.3 6E-11 1.3E-15 104.9 13.6 102 102-220 42-143 (181)
28 TIGR02469 CbiT precorrin-6Y C5 99.3 4.5E-11 9.7E-16 97.4 11.2 105 101-219 18-122 (124)
29 PRK15128 23S rRNA m(5)C1962 me 99.3 3.3E-10 7.1E-15 111.7 19.3 116 101-222 219-342 (396)
30 PRK08287 cobalt-precorrin-6Y C 99.3 2.6E-10 5.6E-15 100.9 16.1 124 100-246 29-153 (187)
31 PF13847 Methyltransf_31: Meth 99.3 2.6E-11 5.7E-16 103.6 9.2 107 101-219 2-110 (152)
32 TIGR03533 L3_gln_methyl protei 99.2 2E-10 4.3E-15 108.6 15.6 154 56-220 77-252 (284)
33 PRK09328 N5-glutamine S-adenos 99.2 5E-10 1.1E-14 104.6 17.9 113 101-220 107-239 (275)
34 TIGR00536 hemK_fam HemK family 99.2 4E-10 8.6E-15 106.5 15.8 155 55-220 69-245 (284)
35 PRK00377 cbiT cobalt-precorrin 99.2 8E-10 1.7E-14 98.8 16.8 130 99-248 37-168 (198)
36 PRK11805 N5-glutamine S-adenos 99.2 4.5E-10 9.7E-15 107.3 16.1 156 55-220 88-264 (307)
37 PRK01544 bifunctional N5-gluta 99.2 5.5E-10 1.2E-14 113.5 17.7 155 55-220 70-270 (506)
38 COG2890 HemK Methylase of poly 99.2 6.2E-10 1.3E-14 105.0 16.8 153 54-220 66-239 (280)
39 TIGR03534 RF_mod_PrmC protein- 99.2 8.5E-10 1.8E-14 101.4 17.3 113 101-220 86-218 (251)
40 COG2813 RsmC 16S RNA G1207 met 99.2 1.1E-10 2.3E-15 109.7 11.3 125 103-248 159-286 (300)
41 COG2242 CobL Precorrin-6B meth 99.2 6E-10 1.3E-14 97.8 14.6 129 90-241 23-151 (187)
42 COG2519 GCD14 tRNA(1-methylade 99.2 2.4E-10 5.3E-15 104.6 12.6 126 100-248 92-219 (256)
43 PRK15001 SAM-dependent 23S rib 99.2 2.5E-10 5.3E-15 111.7 13.4 131 103-247 229-359 (378)
44 PRK09489 rsmC 16S ribosomal RN 99.2 5.5E-10 1.2E-14 108.2 15.6 127 102-248 196-323 (342)
45 PRK14121 tRNA (guanine-N(7)-)- 99.2 5.1E-10 1.1E-14 109.3 15.3 130 101-241 121-251 (390)
46 COG1092 Predicted SAM-dependen 99.2 7.6E-10 1.6E-14 108.4 16.4 115 102-222 217-339 (393)
47 COG4106 Tam Trans-aconitate me 99.2 9.5E-11 2.1E-15 104.5 9.1 126 89-238 20-145 (257)
48 PRK07402 precorrin-6B methylas 99.2 8.4E-10 1.8E-14 98.4 15.1 104 101-219 39-142 (196)
49 PRK14103 trans-aconitate 2-met 99.2 1.8E-10 3.8E-15 107.0 11.1 100 100-219 27-126 (255)
50 TIGR03704 PrmC_rel_meth putati 99.2 8.1E-10 1.8E-14 102.6 15.3 111 102-220 86-217 (251)
51 PRK01683 trans-aconitate 2-met 99.2 2.4E-10 5.1E-15 106.0 11.4 101 101-219 30-130 (258)
52 PLN02589 caffeoyl-CoA O-methyl 99.2 2.5E-10 5.5E-15 105.6 11.1 106 100-218 77-189 (247)
53 PLN03075 nicotianamine synthas 99.2 9.1E-10 2E-14 104.0 15.0 153 101-269 122-277 (296)
54 PRK11036 putative S-adenosyl-L 99.1 4.6E-10 1E-14 104.2 12.7 106 101-218 43-148 (255)
55 PLN02672 methionine S-methyltr 99.1 2.3E-09 4.9E-14 116.2 18.9 172 69-251 86-305 (1082)
56 PRK15451 tRNA cmo(5)U34 methyl 99.1 4.3E-10 9.4E-15 104.1 11.1 107 101-218 55-163 (247)
57 TIGR00537 hemK_rel_arch HemK-r 99.1 1.7E-09 3.8E-14 95.0 14.4 108 101-219 18-140 (179)
58 PRK00517 prmA ribosomal protei 99.1 5.2E-09 1.1E-13 97.0 17.9 161 70-266 88-249 (250)
59 PRK11783 rlmL 23S rRNA m(2)G24 99.1 8.7E-10 1.9E-14 116.3 14.2 116 101-220 537-657 (702)
60 PRK10909 rsmD 16S rRNA m(2)G96 99.1 5.2E-09 1.1E-13 94.0 16.8 146 59-219 12-159 (199)
61 TIGR02752 MenG_heptapren 2-hep 99.1 2E-09 4.3E-14 98.1 14.2 107 101-219 44-151 (231)
62 PF08241 Methyltransf_11: Meth 99.1 1.8E-10 3.9E-15 89.0 6.2 95 107-217 1-95 (95)
63 PRK14967 putative methyltransf 99.1 4.1E-09 9E-14 96.0 16.1 109 101-218 35-158 (223)
64 PF08704 GCD14: tRNA methyltra 99.1 2.4E-09 5.2E-14 99.0 13.4 145 85-250 22-172 (247)
65 TIGR00080 pimt protein-L-isoas 99.1 1.2E-09 2.5E-14 99.0 11.0 103 100-220 75-178 (215)
66 COG2226 UbiE Methylase involve 99.1 3.8E-09 8.1E-14 97.0 14.1 108 100-219 49-156 (238)
67 COG2518 Pcm Protein-L-isoaspar 99.0 1.8E-09 3.8E-14 96.8 11.3 103 98-220 68-170 (209)
68 PF13649 Methyltransf_25: Meth 99.0 6E-10 1.3E-14 88.6 7.4 96 106-213 1-101 (101)
69 PRK14902 16S rRNA methyltransf 99.0 6.2E-09 1.4E-13 104.3 16.4 116 100-220 248-380 (444)
70 PF01209 Ubie_methyltran: ubiE 99.0 8.4E-10 1.8E-14 101.4 9.3 107 100-218 45-152 (233)
71 PLN02233 ubiquinone biosynthes 99.0 1.7E-09 3.6E-14 101.1 11.4 109 101-218 72-181 (261)
72 TIGR00406 prmA ribosomal prote 99.0 1E-08 2.2E-13 97.1 16.8 122 101-245 158-279 (288)
73 PRK13944 protein-L-isoaspartat 99.0 1.7E-09 3.8E-14 97.3 10.8 102 101-219 71-173 (205)
74 PLN02244 tocopherol O-methyltr 99.0 1.4E-09 2.9E-14 105.5 10.8 106 101-218 117-222 (340)
75 TIGR02072 BioC biotin biosynth 99.0 2.1E-09 4.6E-14 97.4 11.3 103 101-219 33-135 (240)
76 TIGR00740 methyltransferase, p 99.0 3E-09 6.5E-14 97.7 12.0 108 101-219 52-161 (239)
77 PRK13942 protein-L-isoaspartat 99.0 2.1E-09 4.6E-14 97.3 10.5 102 101-220 75-177 (212)
78 smart00828 PKS_MT Methyltransf 99.0 1.2E-09 2.6E-14 99.1 8.8 104 104-219 1-104 (224)
79 PRK11207 tellurite resistance 99.0 2.7E-09 6E-14 95.4 10.9 104 101-217 29-132 (197)
80 PRK04266 fibrillarin; Provisio 99.0 1.3E-08 2.8E-13 93.2 15.4 132 100-246 70-207 (226)
81 PF03602 Cons_hypoth95: Conser 99.0 1.6E-09 3.5E-14 96.0 8.9 110 101-220 41-154 (183)
82 TIGR00438 rrmJ cell division p 99.0 6.6E-09 1.4E-13 92.1 12.7 127 101-249 31-170 (188)
83 PF02390 Methyltransf_4: Putat 99.0 4.8E-09 1E-13 93.9 11.5 126 105-241 20-149 (195)
84 PF10672 Methyltrans_SAM: S-ad 99.0 5.5E-09 1.2E-13 98.5 12.4 124 101-233 122-250 (286)
85 TIGR00446 nop2p NOL1/NOP2/sun 99.0 4.4E-08 9.6E-13 91.6 18.2 135 101-245 70-221 (264)
86 PLN02396 hexaprenyldihydroxybe 99.0 3.1E-09 6.7E-14 102.1 10.6 104 102-219 131-235 (322)
87 PF08242 Methyltransf_12: Meth 99.0 1.6E-10 3.4E-15 91.4 1.4 99 107-215 1-99 (99)
88 COG0742 N6-adenine-specific me 99.0 7.7E-09 1.7E-13 91.2 12.0 110 101-220 42-155 (187)
89 PF02353 CMAS: Mycolic acid cy 99.0 3.2E-09 7E-14 99.8 10.1 106 100-219 60-166 (273)
90 PRK10258 biotin biosynthesis p 98.9 6.5E-09 1.4E-13 96.1 11.6 100 101-219 41-140 (251)
91 PTZ00098 phosphoethanolamine N 98.9 5.1E-09 1.1E-13 97.9 10.3 107 99-219 49-156 (263)
92 PRK11188 rrmJ 23S rRNA methylt 98.9 7.2E-09 1.6E-13 93.7 10.7 127 101-249 50-189 (209)
93 COG2227 UbiG 2-polyprenyl-3-me 98.9 4.3E-09 9.4E-14 95.7 8.8 102 102-219 59-161 (243)
94 PRK14968 putative methyltransf 98.9 2.5E-08 5.4E-13 87.4 13.5 111 101-219 22-148 (188)
95 PHA03411 putative methyltransf 98.9 1.6E-08 3.5E-13 94.5 12.8 108 102-222 64-187 (279)
96 TIGR00095 RNA methyltransferas 98.9 2E-08 4.3E-13 89.5 12.9 107 102-219 49-159 (189)
97 PRK14903 16S rRNA methyltransf 98.9 3.2E-08 7E-13 98.8 15.8 136 100-245 235-388 (431)
98 PRK10901 16S rRNA methyltransf 98.9 4.7E-08 1E-12 97.6 16.9 115 100-220 242-373 (427)
99 PF01135 PCMT: Protein-L-isoas 98.9 4.6E-09 1E-13 95.0 8.8 114 86-220 59-173 (209)
100 PF06325 PrmA: Ribosomal prote 98.9 1.1E-08 2.5E-13 96.9 11.3 135 101-266 160-294 (295)
101 PF05401 NodS: Nodulation prot 98.9 3.3E-08 7.3E-13 87.7 13.4 136 98-251 39-181 (201)
102 PRK11873 arsM arsenite S-adeno 98.9 1.5E-08 3.3E-13 94.8 11.9 106 101-218 76-182 (272)
103 TIGR00477 tehB tellurite resis 98.9 1E-08 2.3E-13 91.5 10.1 102 101-216 29-130 (195)
104 PRK14901 16S rRNA methyltransf 98.9 7.1E-08 1.5E-12 96.5 17.1 115 100-219 250-384 (434)
105 PRK14904 16S rRNA methyltransf 98.9 4.1E-08 9E-13 98.5 15.4 133 101-244 249-398 (445)
106 COG2264 PrmA Ribosomal protein 98.9 1.9E-08 4.1E-13 95.0 12.1 137 101-265 161-298 (300)
107 PRK00216 ubiE ubiquinone/menaq 98.9 1.8E-08 3.9E-13 91.5 11.3 108 100-218 49-157 (239)
108 TIGR01934 MenG_MenH_UbiE ubiqu 98.9 2.4E-08 5.1E-13 89.7 11.4 105 100-218 37-142 (223)
109 smart00650 rADc Ribosomal RNA 98.9 2.1E-08 4.6E-13 87.3 10.8 102 101-220 12-114 (169)
110 TIGR01177 conserved hypothetic 98.9 2.2E-08 4.8E-13 96.5 11.8 111 101-219 181-294 (329)
111 PHA03412 putative methyltransf 98.9 2.4E-08 5.1E-13 91.4 11.3 103 102-217 49-160 (241)
112 PLN02490 MPBQ/MSBQ methyltrans 98.8 1.9E-08 4.2E-13 97.1 11.2 103 101-218 112-214 (340)
113 COG2230 Cfa Cyclopropane fatty 98.8 1.7E-08 3.7E-13 94.6 10.2 106 100-219 70-176 (283)
114 PRK08317 hypothetical protein; 98.8 2.7E-08 5.8E-13 90.0 11.3 106 100-218 17-123 (241)
115 cd02440 AdoMet_MTases S-adenos 98.8 3.1E-08 6.8E-13 76.1 10.1 103 105-218 1-103 (107)
116 PLN02336 phosphoethanolamine N 98.8 2.7E-08 5.9E-13 100.4 12.4 105 101-219 265-369 (475)
117 PRK12335 tellurite resistance 98.8 2.3E-08 4.9E-13 94.6 10.4 103 101-217 119-221 (287)
118 PRK00312 pcm protein-L-isoaspa 98.8 2.7E-08 5.8E-13 89.8 10.2 101 100-220 76-176 (212)
119 COG0220 Predicted S-adenosylme 98.8 9E-08 2E-12 87.5 13.4 112 103-219 49-164 (227)
120 TIGR00563 rsmB ribosomal RNA s 98.8 1.6E-07 3.4E-12 93.8 16.1 137 100-244 236-389 (426)
121 PRK13943 protein-L-isoaspartat 98.8 4.6E-08 9.9E-13 94.0 11.7 101 101-219 79-180 (322)
122 PRK06922 hypothetical protein; 98.8 4.1E-08 8.8E-13 101.1 11.9 112 102-219 418-537 (677)
123 PTZ00146 fibrillarin; Provisio 98.8 1.9E-07 4.2E-12 88.0 15.6 151 101-268 131-288 (293)
124 KOG1663 O-methyltransferase [S 98.8 1.9E-07 4E-12 84.5 14.5 149 101-266 72-236 (237)
125 PRK05134 bifunctional 3-demeth 98.8 5.8E-08 1.3E-12 88.6 10.9 104 102-219 48-151 (233)
126 PRK11705 cyclopropane fatty ac 98.8 4.9E-08 1.1E-12 96.1 10.9 101 101-219 166-267 (383)
127 PRK15068 tRNA mo(5)U34 methylt 98.8 7.7E-08 1.7E-12 92.6 11.8 105 101-218 121-225 (322)
128 TIGR02716 C20_methyl_CrtF C-20 98.7 6E-08 1.3E-12 92.4 10.7 106 101-218 148-253 (306)
129 PRK11088 rrmA 23S rRNA methylt 98.7 6.2E-08 1.4E-12 90.9 10.2 95 101-219 84-181 (272)
130 TIGR01983 UbiG ubiquinone bios 98.7 9.3E-08 2E-12 86.5 10.7 106 101-219 44-149 (224)
131 KOG2899 Predicted methyltransf 98.7 8.3E-08 1.8E-12 87.2 10.0 110 102-218 58-208 (288)
132 PRK03522 rumB 23S rRNA methylu 98.7 1.9E-07 4E-12 89.6 12.7 104 102-221 173-276 (315)
133 PRK04338 N(2),N(2)-dimethylgua 98.7 1.2E-07 2.6E-12 93.2 11.3 100 104-219 59-158 (382)
134 PRK13168 rumA 23S rRNA m(5)U19 98.7 2.1E-07 4.6E-12 93.3 13.2 103 101-220 296-401 (443)
135 KOG1270 Methyltransferases [Co 98.7 1.7E-08 3.6E-13 92.8 4.7 102 103-219 90-195 (282)
136 TIGR03587 Pse_Me-ase pseudamin 98.7 1.3E-07 2.9E-12 85.1 10.4 94 100-209 41-134 (204)
137 TIGR00479 rumA 23S rRNA (uraci 98.7 4.9E-07 1.1E-11 90.3 15.4 103 101-219 291-396 (431)
138 PLN02336 phosphoethanolamine N 98.7 9.3E-08 2E-12 96.5 10.3 102 101-218 36-141 (475)
139 TIGR02085 meth_trns_rumB 23S r 98.7 3.9E-07 8.4E-12 89.5 14.3 102 102-219 233-334 (374)
140 TIGR00452 methyltransferase, p 98.7 1.9E-07 4.2E-12 89.4 11.5 103 101-219 120-225 (314)
141 KOG1540 Ubiquinone biosynthesi 98.7 2.6E-07 5.5E-12 84.7 11.6 108 101-217 99-212 (296)
142 TIGR00308 TRM1 tRNA(guanine-26 98.7 1.7E-07 3.7E-12 91.8 11.3 101 103-218 45-146 (374)
143 PF05891 Methyltransf_PK: AdoM 98.6 6E-08 1.3E-12 87.3 7.0 102 102-218 55-160 (218)
144 TIGR03438 probable methyltrans 98.6 3.2E-07 6.9E-12 87.5 11.4 111 101-219 62-177 (301)
145 PF13489 Methyltransf_23: Meth 98.6 1.3E-07 2.8E-12 80.4 7.8 96 100-219 20-115 (161)
146 PRK05785 hypothetical protein; 98.6 5.6E-07 1.2E-11 82.3 12.5 92 101-213 50-141 (226)
147 COG2263 Predicted RNA methylas 98.6 4.6E-07 1E-11 79.7 11.3 101 101-218 44-144 (198)
148 KOG3010 Methyltransferase [Gen 98.6 8.4E-08 1.8E-12 87.2 6.8 130 100-243 31-161 (261)
149 TIGR03840 TMPT_Se_Te thiopurin 98.6 1.8E-07 4E-12 84.8 9.2 110 101-217 33-150 (213)
150 TIGR02021 BchM-ChlM magnesium 98.6 5.4E-07 1.2E-11 81.6 11.4 102 101-217 54-156 (219)
151 KOG4300 Predicted methyltransf 98.6 1.8E-07 3.9E-12 83.3 7.8 106 102-219 76-182 (252)
152 PRK05031 tRNA (uracil-5-)-meth 98.6 3.3E-06 7.2E-11 82.6 17.1 100 103-220 207-321 (362)
153 TIGR02143 trmA_only tRNA (urac 98.6 3.8E-06 8.2E-11 81.9 17.3 100 103-220 198-312 (353)
154 KOG1271 Methyltransferases [Ge 98.5 5.9E-07 1.3E-11 78.5 10.1 111 102-219 67-181 (227)
155 PRK07580 Mg-protoporphyrin IX 98.5 1.2E-06 2.6E-11 79.4 12.5 74 101-183 62-135 (230)
156 PF03848 TehB: Tellurite resis 98.5 4.3E-07 9.3E-12 80.9 9.0 105 100-218 28-132 (192)
157 PRK06202 hypothetical protein; 98.5 6.4E-07 1.4E-11 81.9 9.8 103 101-218 59-165 (232)
158 PRK13255 thiopurine S-methyltr 98.5 4.8E-07 1E-11 82.4 8.8 107 101-214 36-150 (218)
159 smart00138 MeTrc Methyltransfe 98.5 3.1E-07 6.6E-12 86.0 7.7 111 102-219 99-242 (264)
160 PF02475 Met_10: Met-10+ like- 98.4 3.7E-07 8.1E-12 82.0 6.6 100 101-216 100-199 (200)
161 PF00891 Methyltransf_2: O-met 98.4 5.1E-07 1.1E-11 83.0 7.6 97 101-218 99-198 (241)
162 KOG2904 Predicted methyltransf 98.4 2.2E-06 4.8E-11 79.3 11.6 117 100-220 146-286 (328)
163 PRK11933 yebU rRNA (cytosine-C 98.4 8.3E-06 1.8E-10 82.2 16.0 134 101-244 112-263 (470)
164 PF07021 MetW: Methionine bios 98.4 9.9E-07 2.1E-11 78.1 8.2 73 100-184 11-84 (193)
165 PTZ00338 dimethyladenosine tra 98.4 2.8E-06 6E-11 80.8 11.9 102 101-219 35-137 (294)
166 PRK01544 bifunctional N5-gluta 98.4 7.1E-06 1.5E-10 83.7 15.5 129 101-240 346-477 (506)
167 PLN02585 magnesium protoporphy 98.4 8.8E-06 1.9E-10 78.1 14.3 104 102-218 144-249 (315)
168 PF05185 PRMT5: PRMT5 arginine 98.4 2.1E-06 4.5E-11 86.1 10.0 106 103-218 187-296 (448)
169 PRK11727 23S rRNA mA1618 methy 98.3 4.4E-06 9.6E-11 80.2 11.5 82 102-185 114-199 (321)
170 PF08003 Methyltransf_9: Prote 98.3 7.5E-06 1.6E-10 77.3 11.7 114 86-219 102-219 (315)
171 COG0030 KsgA Dimethyladenosine 98.3 4.2E-06 9.1E-11 77.8 9.9 74 103-186 31-106 (259)
172 PF09445 Methyltransf_15: RNA 98.3 2.8E-06 6E-11 73.8 7.4 75 105-184 2-78 (163)
173 COG3963 Phospholipid N-methylt 98.2 9.5E-06 2.1E-10 70.1 10.2 105 101-219 47-156 (194)
174 COG4976 Predicted methyltransf 98.2 2.8E-07 6.1E-12 83.2 0.8 100 103-220 126-226 (287)
175 PF05430 Methyltransf_30: S-ad 98.2 3.2E-06 6.9E-11 70.2 6.9 93 156-266 31-123 (124)
176 PRK14896 ksgA 16S ribosomal RN 98.2 4E-06 8.8E-11 78.1 8.4 74 101-185 28-101 (258)
177 PRK00274 ksgA 16S ribosomal RN 98.2 5.1E-06 1.1E-10 78.1 8.6 74 101-184 41-114 (272)
178 KOG1661 Protein-L-isoaspartate 98.2 5.6E-06 1.2E-10 74.0 7.6 120 86-220 67-194 (237)
179 TIGR02081 metW methionine bios 98.2 6.3E-06 1.4E-10 73.3 7.9 72 101-184 12-84 (194)
180 COG2265 TrmA SAM-dependent met 98.2 5.2E-05 1.1E-09 75.7 15.2 103 102-220 293-397 (432)
181 COG2520 Predicted methyltransf 98.2 4.8E-05 1E-09 73.4 14.2 106 101-222 187-292 (341)
182 PF01728 FtsJ: FtsJ-like methy 98.1 3.9E-06 8.4E-11 73.7 5.5 125 102-249 23-163 (181)
183 KOG1709 Guanidinoacetate methy 98.1 3.7E-05 8.1E-10 69.0 11.1 119 84-218 86-205 (271)
184 TIGR00755 ksgA dimethyladenosi 98.1 2.6E-05 5.6E-10 72.4 10.6 73 101-184 28-103 (253)
185 PRK13256 thiopurine S-methyltr 98.1 2.4E-05 5.2E-10 71.6 10.1 110 101-217 42-161 (226)
186 PF05219 DREV: DREV methyltran 98.1 3E-05 6.5E-10 71.7 10.3 93 102-218 94-187 (265)
187 PRK10742 putative methyltransf 98.0 5.8E-05 1.3E-09 69.7 11.8 81 105-187 91-176 (250)
188 KOG3191 Predicted N6-DNA-methy 98.0 0.00013 2.7E-09 64.1 13.2 127 101-241 42-184 (209)
189 PF10294 Methyltransf_16: Puta 98.0 2.5E-05 5.4E-10 68.5 8.8 108 101-218 44-155 (173)
190 PF05724 TPMT: Thiopurine S-me 98.0 1.6E-05 3.5E-10 72.4 7.3 108 100-214 35-150 (218)
191 PF01170 UPF0020: Putative RNA 98.0 2.2E-05 4.7E-10 69.3 7.9 112 101-218 27-150 (179)
192 PRK01747 mnmC bifunctional tRN 98.0 3.4E-05 7.3E-10 81.2 10.3 114 102-219 57-206 (662)
193 PRK00050 16S rRNA m(4)C1402 me 98.0 4.2E-05 9E-10 72.7 9.6 77 102-184 19-99 (296)
194 PF13578 Methyltransf_24: Meth 98.0 1.1E-05 2.3E-10 64.5 4.6 97 107-218 1-104 (106)
195 KOG1541 Predicted protein carb 97.9 5.3E-05 1.1E-09 68.3 8.0 125 102-244 50-182 (270)
196 KOG2940 Predicted methyltransf 97.8 2.8E-05 6E-10 70.5 5.5 101 101-218 71-173 (325)
197 COG1041 Predicted DNA modifica 97.8 0.00013 2.9E-09 70.1 10.0 144 87-251 184-332 (347)
198 PF02527 GidB: rRNA small subu 97.8 0.0004 8.7E-09 61.6 12.4 98 105-221 51-150 (184)
199 PF05958 tRNA_U5-meth_tr: tRNA 97.8 8.5E-05 1.9E-09 72.4 8.4 79 101-185 195-288 (352)
200 PF03059 NAS: Nicotianamine sy 97.8 0.00027 5.8E-09 66.5 11.3 109 102-219 120-230 (276)
201 KOG2915 tRNA(1-methyladenosine 97.8 0.0002 4.4E-09 66.5 10.2 132 97-249 100-235 (314)
202 KOG1499 Protein arginine N-met 97.7 6.8E-05 1.5E-09 71.9 7.1 105 102-216 60-164 (346)
203 TIGR02987 met_A_Alw26 type II 97.7 0.00019 4E-09 73.6 10.8 79 102-184 31-121 (524)
204 KOG0820 Ribosomal RNA adenine 97.7 0.00013 2.9E-09 67.7 7.9 78 101-186 57-134 (315)
205 PF00398 RrnaAD: Ribosomal RNA 97.7 8.6E-05 1.9E-09 69.4 6.7 75 102-184 30-106 (262)
206 PLN02232 ubiquinone biosynthes 97.7 0.00013 2.7E-09 63.2 7.1 80 130-218 1-80 (160)
207 PF02384 N6_Mtase: N-6 DNA Met 97.7 5.9E-05 1.3E-09 71.9 5.5 117 99-218 43-182 (311)
208 PF03291 Pox_MCEL: mRNA cappin 97.6 8.6E-05 1.9E-09 71.8 6.0 114 102-219 62-186 (331)
209 TIGR00478 tly hemolysin TlyA f 97.6 0.00043 9.4E-09 63.5 9.7 68 71-141 46-113 (228)
210 PF02005 TRM: N2,N2-dimethylgu 97.6 0.00026 5.6E-09 69.6 8.7 104 103-219 50-154 (377)
211 COG0144 Sun tRNA and rRNA cyto 97.5 0.0022 4.8E-08 62.7 14.1 141 96-245 149-310 (355)
212 PRK11783 rlmL 23S rRNA m(2)G24 97.5 0.00063 1.4E-08 72.2 11.1 82 102-186 190-314 (702)
213 COG4076 Predicted RNA methylas 97.5 0.00014 3.1E-09 64.1 5.1 98 104-218 34-134 (252)
214 PF01861 DUF43: Protein of unk 97.5 0.00054 1.2E-08 62.9 8.7 98 102-213 44-142 (243)
215 PF01269 Fibrillarin: Fibrilla 97.5 0.00063 1.4E-08 61.7 8.6 144 101-265 72-226 (229)
216 KOG1975 mRNA cap methyltransfe 97.4 0.00066 1.4E-08 64.5 9.0 115 101-219 116-237 (389)
217 PF01189 Nol1_Nop2_Fmu: NOL1/N 97.4 0.0015 3.3E-08 61.8 11.7 138 101-247 84-243 (283)
218 COG1867 TRM1 N2,N2-dimethylgua 97.4 0.001 2.3E-08 64.3 9.5 102 103-219 53-154 (380)
219 PRK04148 hypothetical protein; 97.3 0.00058 1.2E-08 57.4 6.5 69 101-182 15-84 (134)
220 KOG3420 Predicted RNA methylas 97.3 0.00034 7.3E-09 59.3 5.0 92 101-203 47-138 (185)
221 COG0357 GidB Predicted S-adeno 97.3 0.0071 1.5E-07 54.9 13.7 133 103-255 68-201 (215)
222 KOG1562 Spermidine synthase [A 97.3 0.0003 6.5E-09 66.0 4.7 166 43-220 121-294 (337)
223 KOG1500 Protein arginine N-met 97.2 0.0018 3.8E-08 62.0 9.4 103 102-219 177-282 (517)
224 PF12147 Methyltransf_20: Puta 97.2 0.0039 8.5E-08 58.7 11.4 130 100-241 133-266 (311)
225 PF06080 DUF938: Protein of un 97.2 0.0015 3.3E-08 58.7 8.1 135 101-243 23-166 (204)
226 PRK11760 putative 23S rRNA C24 97.1 0.0038 8.3E-08 60.3 10.4 116 101-242 210-327 (357)
227 COG0293 FtsJ 23S rRNA methylas 97.1 0.0036 7.7E-08 56.3 9.5 126 101-249 44-183 (205)
228 KOG3178 Hydroxyindole-O-methyl 97.1 0.0012 2.7E-08 63.4 6.8 96 103-218 178-274 (342)
229 PF01739 CheR: CheR methyltran 97.0 0.0029 6.2E-08 56.8 8.4 127 86-219 12-175 (196)
230 KOG2730 Methylase [General fun 97.0 0.0038 8.2E-08 56.5 8.8 78 102-184 94-174 (263)
231 KOG2361 Predicted methyltransf 96.9 0.0011 2.4E-08 60.7 4.7 107 102-219 71-183 (264)
232 KOG0822 Protein kinase inhibit 96.8 0.0034 7.4E-08 63.2 7.4 106 103-219 368-478 (649)
233 PF07942 N2227: N2227-like pro 96.8 0.0046 1E-07 58.0 7.8 111 102-222 56-204 (270)
234 TIGR01444 fkbM_fam methyltrans 96.7 0.0063 1.4E-07 50.8 7.1 55 106-164 2-56 (143)
235 COG0116 Predicted N6-adenine-s 96.7 0.011 2.5E-07 57.7 9.7 111 103-219 192-344 (381)
236 COG1889 NOP1 Fibrillarin-like 96.6 0.034 7.4E-07 49.9 11.7 127 101-242 75-206 (231)
237 TIGR00006 S-adenosyl-methyltra 96.5 0.016 3.5E-07 55.3 9.5 78 102-184 20-101 (305)
238 PF08123 DOT1: Histone methyla 96.5 0.023 5E-07 51.3 10.1 109 101-217 41-156 (205)
239 PF04816 DUF633: Family of unk 96.5 0.016 3.5E-07 52.3 9.1 140 106-268 1-141 (205)
240 PRK10611 chemotaxis methyltran 96.4 0.0076 1.6E-07 57.2 6.7 111 102-218 115-261 (287)
241 KOG1253 tRNA methyltransferase 96.3 0.0037 8.1E-08 62.5 4.1 105 101-219 108-216 (525)
242 PF09243 Rsm22: Mitochondrial 96.3 0.026 5.6E-07 53.2 9.3 47 101-147 32-79 (274)
243 cd00315 Cyt_C5_DNA_methylase C 96.2 0.13 2.9E-06 48.4 13.5 148 105-268 2-165 (275)
244 KOG4589 Cell division protein 96.0 0.11 2.5E-06 46.1 11.1 142 102-267 69-226 (232)
245 COG0500 SmtA SAM-dependent met 95.9 0.086 1.9E-06 41.7 9.7 102 106-220 52-156 (257)
246 COG0275 Predicted S-adenosylme 95.9 0.052 1.1E-06 51.5 9.4 78 102-184 23-105 (314)
247 COG1352 CheR Methylase of chem 95.9 0.031 6.7E-07 52.5 7.9 43 102-144 96-147 (268)
248 PF04445 SAM_MT: Putative SAM- 95.9 0.0071 1.5E-07 55.5 3.5 82 104-187 77-163 (234)
249 PF01795 Methyltransf_5: MraW 95.8 0.029 6.2E-07 53.7 7.2 79 101-184 19-102 (310)
250 PRK05562 precorrin-2 dehydroge 95.7 0.052 1.1E-06 49.6 8.4 108 85-221 7-118 (223)
251 PF04989 CmcI: Cephalosporin h 95.7 0.027 5.8E-07 50.8 6.3 104 101-218 31-146 (206)
252 PF03141 Methyltransf_29: Puta 95.7 0.04 8.8E-07 55.5 8.1 129 73-222 87-221 (506)
253 COG2384 Predicted SAM-dependen 95.6 0.063 1.4E-06 48.7 8.4 105 101-218 15-119 (226)
254 KOG1122 tRNA and rRNA cytosine 95.6 0.11 2.5E-06 51.2 10.5 139 102-249 241-397 (460)
255 COG1063 Tdh Threonine dehydrog 95.5 0.13 2.8E-06 50.1 10.9 98 103-219 169-269 (350)
256 COG0286 HsdM Type I restrictio 95.5 0.11 2.4E-06 52.9 10.8 111 102-216 186-323 (489)
257 PF05971 Methyltransf_10: Prot 95.5 0.026 5.6E-07 53.8 5.7 80 103-185 103-187 (299)
258 PRK09424 pntA NAD(P) transhydr 95.5 0.1 2.2E-06 53.4 10.3 109 102-218 164-284 (509)
259 PF05148 Methyltransf_8: Hypot 95.4 0.0049 1.1E-07 55.5 0.6 106 100-241 70-176 (219)
260 COG1189 Predicted rRNA methyla 95.3 0.074 1.6E-06 48.8 7.9 98 100-217 77-176 (245)
261 KOG2187 tRNA uracil-5-methyltr 95.3 0.026 5.6E-07 56.9 5.3 80 100-185 381-465 (534)
262 PF13679 Methyltransf_32: Meth 95.3 0.05 1.1E-06 45.8 6.2 46 101-147 24-74 (141)
263 PF14314 Methyltrans_Mon: Viru 95.3 0.063 1.4E-06 56.2 8.0 160 101-266 321-500 (675)
264 PF04672 Methyltransf_19: S-ad 95.2 0.14 3E-06 48.0 9.5 106 102-220 68-191 (267)
265 KOG3045 Predicted RNA methylas 95.2 0.066 1.4E-06 49.8 7.0 117 69-218 121-263 (325)
266 PF07091 FmrO: Ribosomal RNA m 95.1 0.063 1.4E-06 49.7 6.7 76 101-183 104-179 (251)
267 PRK11524 putative methyltransf 95.0 0.063 1.4E-06 50.7 6.7 66 154-220 5-81 (284)
268 KOG1596 Fibrillarin and relate 94.8 0.16 3.4E-06 46.9 8.2 122 101-241 155-286 (317)
269 COG1568 Predicted methyltransf 94.6 0.059 1.3E-06 50.5 5.2 127 102-245 152-282 (354)
270 KOG3201 Uncharacterized conser 94.6 0.05 1.1E-06 47.2 4.3 106 103-218 30-139 (201)
271 PTZ00357 methyltransferase; Pr 94.6 0.11 2.5E-06 54.2 7.6 104 105-214 703-830 (1072)
272 TIGR03439 methyl_EasF probable 94.5 0.42 9E-06 46.1 11.1 110 101-219 75-197 (319)
273 PF01210 NAD_Gly3P_dh_N: NAD-d 94.5 0.53 1.2E-05 40.3 10.6 143 105-267 1-153 (157)
274 KOG3115 Methyltransferase-like 94.4 0.21 4.6E-06 44.9 8.0 113 104-218 62-182 (249)
275 TIGR00518 alaDH alanine dehydr 94.2 0.49 1.1E-05 46.5 11.0 98 102-216 166-264 (370)
276 COG3897 Predicted methyltransf 94.1 0.062 1.3E-06 48.0 4.1 100 103-222 80-180 (218)
277 PRK07502 cyclohexadienyl dehyd 94.0 3.8 8.3E-05 38.9 16.6 93 103-220 6-100 (307)
278 COG0287 TyrA Prephenate dehydr 94.0 0.74 1.6E-05 43.6 11.4 174 103-309 3-191 (279)
279 COG1064 AdhP Zn-dependent alco 93.9 0.4 8.7E-06 46.5 9.6 92 101-220 165-260 (339)
280 KOG0024 Sorbitol dehydrogenase 93.7 0.43 9.3E-06 45.9 9.2 101 101-217 168-271 (354)
281 PRK10637 cysG siroheme synthas 93.7 0.28 6E-06 49.6 8.5 99 93-220 2-104 (457)
282 PF00670 AdoHcyase_NAD: S-aden 93.7 0.75 1.6E-05 40.0 10.0 90 101-222 21-112 (162)
283 KOG0821 Predicted ribosomal RN 93.6 0.058 1.3E-06 49.0 2.9 60 103-168 51-110 (326)
284 PRK13699 putative methylase; P 93.3 0.2 4.2E-06 45.9 6.0 61 158-219 2-72 (227)
285 PRK09880 L-idonate 5-dehydroge 93.3 0.5 1.1E-05 45.3 9.2 97 102-219 169-266 (343)
286 PRK05476 S-adenosyl-L-homocyst 93.2 1.5 3.2E-05 44.0 12.6 132 102-268 211-343 (425)
287 PF06962 rRNA_methylase: Putat 93.2 0.4 8.6E-06 40.7 7.3 107 128-241 1-113 (140)
288 TIGR01470 cysG_Nterm siroheme 93.0 0.91 2E-05 40.9 9.9 96 96-220 2-101 (205)
289 PHA01634 hypothetical protein 92.9 0.22 4.7E-06 41.6 5.1 75 101-184 27-101 (156)
290 cd08283 FDH_like_1 Glutathione 92.8 1.1 2.4E-05 43.8 11.1 111 101-219 183-306 (386)
291 COG4121 Uncharacterized conser 92.8 0.11 2.4E-06 48.2 3.7 113 103-219 59-208 (252)
292 KOG1099 SAM-dependent methyltr 92.8 0.51 1.1E-05 43.3 7.8 140 102-267 41-205 (294)
293 TIGR00561 pntA NAD(P) transhyd 92.7 1.1 2.4E-05 46.0 11.0 106 102-216 163-281 (511)
294 PF00145 DNA_methylase: C-5 cy 92.7 1.6 3.4E-05 41.1 11.6 147 105-268 2-164 (335)
295 COG0686 Ald Alanine dehydrogen 92.6 1.1 2.4E-05 43.0 9.9 98 102-216 167-265 (371)
296 PF01262 AlaDh_PNT_C: Alanine 92.3 0.42 9.1E-06 41.4 6.5 104 102-216 19-136 (168)
297 TIGR00936 ahcY adenosylhomocys 92.3 4 8.7E-05 40.7 14.1 118 101-249 193-311 (406)
298 PF11599 AviRa: RRNA methyltra 92.2 0.92 2E-05 41.3 8.6 125 87-217 39-212 (246)
299 KOG2198 tRNA cytosine-5-methyl 92.2 1.2 2.6E-05 43.5 9.9 139 101-244 154-321 (375)
300 KOG2352 Predicted spermine/spe 91.9 0.95 2.1E-05 45.7 9.1 106 104-217 50-159 (482)
301 PF06460 NSP13: Coronavirus NS 91.6 1.6 3.4E-05 40.8 9.5 154 86-265 43-207 (299)
302 PF03721 UDPG_MGDP_dh_N: UDP-g 91.6 2.5 5.4E-05 37.4 10.7 110 105-222 2-123 (185)
303 TIGR02356 adenyl_thiF thiazole 91.4 0.89 1.9E-05 40.7 7.8 35 102-136 20-55 (202)
304 PRK09260 3-hydroxybutyryl-CoA 91.4 0.9 2E-05 42.8 8.2 102 104-220 2-118 (288)
305 PF04378 RsmJ: Ribosomal RNA s 91.3 1.7 3.6E-05 40.4 9.6 122 107-247 62-189 (245)
306 KOG4058 Uncharacterized conser 91.3 0.26 5.7E-06 42.2 3.9 57 89-146 58-115 (199)
307 cd05298 GH4_GlvA_pagL_like Gly 91.3 1.6 3.4E-05 44.0 10.1 42 105-147 2-54 (437)
308 PF07279 DUF1442: Protein of u 90.9 2.7 5.9E-05 38.2 10.2 112 89-217 30-146 (218)
309 KOG3987 Uncharacterized conser 90.9 0.055 1.2E-06 48.8 -0.6 94 100-217 110-205 (288)
310 PRK12475 thiamine/molybdopteri 90.9 0.97 2.1E-05 43.9 7.9 35 102-136 23-58 (338)
311 PRK11064 wecC UDP-N-acetyl-D-m 90.8 3.8 8.3E-05 40.9 12.3 103 104-220 4-120 (415)
312 PLN02353 probable UDP-glucose 90.8 5.9 0.00013 40.4 13.7 141 104-255 2-158 (473)
313 PRK06719 precorrin-2 dehydroge 90.6 0.34 7.5E-06 41.7 4.1 77 92-185 2-80 (157)
314 PF02254 TrkA_N: TrkA-N domain 90.6 2.6 5.7E-05 33.5 9.1 91 106-219 1-96 (116)
315 PF12692 Methyltransf_17: S-ad 90.5 0.58 1.3E-05 40.0 5.2 112 92-217 18-132 (160)
316 PF01555 N6_N4_Mtase: DNA meth 90.4 0.67 1.4E-05 41.1 6.0 44 99-144 188-231 (231)
317 COG5459 Predicted rRNA methyla 90.4 0.37 8E-06 46.8 4.4 107 102-218 113-224 (484)
318 PRK05808 3-hydroxybutyryl-CoA 90.1 1.1 2.3E-05 42.1 7.4 102 104-221 4-120 (282)
319 PRK05597 molybdopterin biosynt 89.8 1.3 2.9E-05 43.2 8.0 35 102-136 27-62 (355)
320 cd05197 GH4_glycoside_hydrolas 89.7 4 8.7E-05 41.0 11.4 42 105-147 2-54 (425)
321 PF02719 Polysacc_synt_2: Poly 89.6 1.1 2.5E-05 42.5 7.0 75 106-184 1-86 (293)
322 PLN02494 adenosylhomocysteinas 89.6 7.9 0.00017 39.4 13.3 118 102-250 253-372 (477)
323 PF10354 DUF2431: Domain of un 89.5 0.4 8.6E-06 41.8 3.6 110 107-218 1-124 (166)
324 TIGR01202 bchC 2-desacetyl-2-h 89.2 1.8 3.9E-05 40.9 8.3 86 102-218 144-230 (308)
325 PRK07340 ornithine cyclodeamin 89.0 15 0.00034 34.9 14.4 113 59-186 84-199 (304)
326 cd08293 PTGR2 Prostaglandin re 88.8 3.2 6.9E-05 39.4 9.7 95 104-218 156-253 (345)
327 KOG2078 tRNA modification enzy 88.8 1.3 2.8E-05 44.1 6.9 69 101-173 248-316 (495)
328 cd08230 glucose_DH Glucose deh 88.5 2.7 5.9E-05 40.4 9.1 94 102-219 172-269 (355)
329 PRK08644 thiamine biosynthesis 88.5 2.2 4.8E-05 38.6 7.9 34 102-135 27-61 (212)
330 TIGR03366 HpnZ_proposed putati 88.4 4.4 9.5E-05 37.6 10.2 96 102-219 120-218 (280)
331 TIGR03451 mycoS_dep_FDH mycoth 88.4 3 6.4E-05 40.2 9.3 99 101-219 175-276 (358)
332 cd01487 E1_ThiF_like E1_ThiF_l 88.3 1.8 3.9E-05 37.8 7.0 31 105-136 1-33 (174)
333 COG0569 TrkA K+ transport syst 88.3 3.1 6.7E-05 37.9 8.8 71 104-185 1-76 (225)
334 PRK07066 3-hydroxybutyryl-CoA 88.1 3.1 6.8E-05 40.1 9.1 103 103-220 7-120 (321)
335 PRK11524 putative methyltransf 88.1 1.4 3.1E-05 41.5 6.6 56 90-147 196-251 (284)
336 PF02737 3HCDH_N: 3-hydroxyacy 88.1 4.1 8.8E-05 35.7 9.1 100 105-220 1-115 (180)
337 cd05297 GH4_alpha_glucosidase_ 88.0 1.5 3.2E-05 44.0 7.0 75 105-184 2-83 (423)
338 PRK00066 ldh L-lactate dehydro 87.8 8.8 0.00019 36.8 12.0 81 100-187 3-85 (315)
339 PF02826 2-Hacid_dh_C: D-isome 87.6 18 0.00039 31.4 13.3 109 101-240 34-143 (178)
340 cd08281 liver_ADH_like1 Zinc-d 87.4 3.5 7.6E-05 40.0 9.2 99 101-219 190-290 (371)
341 cd05188 MDR Medium chain reduc 87.3 6.2 0.00013 35.4 10.2 98 101-219 133-232 (271)
342 PRK07688 thiamine/molybdopteri 87.1 3.1 6.7E-05 40.4 8.5 35 102-136 23-58 (339)
343 PRK07530 3-hydroxybutyryl-CoA 87.1 2.8 6.2E-05 39.4 8.1 103 103-221 4-121 (292)
344 COG1648 CysG Siroheme synthase 86.9 2 4.3E-05 39.0 6.6 76 95-186 4-83 (210)
345 PRK08762 molybdopterin biosynt 86.8 2 4.4E-05 42.2 7.2 34 102-135 134-168 (376)
346 cd01485 E1-1_like Ubiquitin ac 86.7 3.7 8E-05 36.6 8.2 34 103-136 19-53 (198)
347 PF03269 DUF268: Caenorhabditi 86.7 1.8 3.9E-05 37.7 5.7 104 103-219 2-111 (177)
348 PF01408 GFO_IDH_MocA: Oxidore 86.7 14 0.00031 29.2 12.2 109 105-242 2-113 (120)
349 PRK07819 3-hydroxybutyryl-CoA 86.6 2.6 5.6E-05 39.8 7.5 101 104-220 6-122 (286)
350 PRK06035 3-hydroxyacyl-CoA deh 86.6 4.2 9.1E-05 38.3 8.9 100 104-219 4-121 (291)
351 cd01492 Aos1_SUMO Ubiquitin ac 86.6 3.5 7.5E-05 36.8 7.9 35 102-136 20-55 (197)
352 cd00401 AdoHcyase S-adenosyl-L 86.6 4.4 9.5E-05 40.5 9.4 43 102-145 201-244 (413)
353 cd08285 NADP_ADH NADP(H)-depen 86.5 4.8 0.0001 38.5 9.5 98 101-218 165-265 (351)
354 PF01488 Shikimate_DH: Shikima 86.4 4.9 0.00011 33.4 8.3 84 101-203 10-97 (135)
355 PRK15116 sulfur acceptor prote 86.4 6.1 0.00013 37.2 9.7 35 102-136 29-64 (268)
356 PF00107 ADH_zinc_N: Zinc-bind 86.1 3.1 6.8E-05 33.5 6.9 87 112-219 1-89 (130)
357 PF02636 Methyltransf_28: Puta 86.1 0.62 1.3E-05 43.1 2.9 45 103-147 19-71 (252)
358 PF03141 Methyltransf_29: Puta 86.1 3.5 7.5E-05 42.0 8.3 104 100-219 363-467 (506)
359 PRK03562 glutathione-regulated 86.0 3.4 7.4E-05 43.5 8.7 71 103-186 400-475 (621)
360 PRK10309 galactitol-1-phosphat 85.9 5.4 0.00012 38.1 9.5 100 101-219 159-260 (347)
361 PRK08268 3-hydroxy-acyl-CoA de 85.9 4.6 9.9E-05 41.5 9.4 105 101-221 5-124 (507)
362 PLN02545 3-hydroxybutyryl-CoA 85.9 4.8 0.0001 37.9 9.0 103 103-221 4-121 (295)
363 PF13241 NAD_binding_7: Putati 85.7 3.4 7.4E-05 32.7 6.7 91 100-222 4-94 (103)
364 PTZ00117 malate dehydrogenase; 85.6 10 0.00022 36.5 11.1 107 102-217 4-120 (319)
365 COG0499 SAM1 S-adenosylhomocys 85.5 29 0.00063 34.2 13.9 118 102-250 208-326 (420)
366 cd00757 ThiF_MoeB_HesA_family 85.3 3.2 7E-05 37.7 7.2 35 102-136 20-55 (228)
367 cd05213 NAD_bind_Glutamyl_tRNA 85.2 11 0.00024 36.0 11.1 96 102-222 177-275 (311)
368 cd00755 YgdL_like Family of ac 85.1 5 0.00011 36.8 8.4 35 102-136 10-45 (231)
369 PRK06130 3-hydroxybutyryl-CoA 85.0 6.7 0.00015 37.1 9.6 103 103-220 4-116 (311)
370 PRK08293 3-hydroxybutyryl-CoA 85.0 1.4 3.1E-05 41.4 4.9 102 104-220 4-121 (287)
371 COG5379 BtaA S-adenosylmethion 84.9 1.8 3.9E-05 41.2 5.3 76 101-185 62-142 (414)
372 PRK09496 trkA potassium transp 84.9 5.5 0.00012 39.7 9.3 73 102-185 230-307 (453)
373 PF06690 DUF1188: Protein of u 84.7 2.5 5.3E-05 38.9 5.9 64 101-184 40-104 (252)
374 cd05291 HicDH_like L-2-hydroxy 84.6 13 0.00029 35.2 11.4 78 104-187 1-80 (306)
375 PTZ00082 L-lactate dehydrogena 84.6 17 0.00037 35.0 12.1 78 102-186 5-85 (321)
376 COG2961 ComJ Protein involved 84.6 9.5 0.00021 35.6 9.7 121 107-246 93-219 (279)
377 TIGR00675 dcm DNA-methyltransf 84.5 2.6 5.6E-05 40.4 6.5 145 106-266 1-160 (315)
378 PRK06718 precorrin-2 dehydroge 84.4 2.3 5.1E-05 38.1 5.8 75 96-186 3-81 (202)
379 cd05290 LDH_3 A subgroup of L- 84.4 14 0.0003 35.4 11.4 77 105-187 1-80 (307)
380 PF02153 PDH: Prephenate dehyd 84.4 34 0.00074 31.6 13.8 159 116-309 1-178 (258)
381 COG1086 Predicted nucleoside-d 84.2 6 0.00013 40.9 9.1 79 102-184 249-334 (588)
382 cd08239 THR_DH_like L-threonin 84.2 9.5 0.00021 36.1 10.3 98 101-219 162-262 (339)
383 PRK08618 ornithine cyclodeamin 84.1 28 0.0006 33.4 13.4 115 58-185 85-202 (325)
384 cd08294 leukotriene_B4_DH_like 84.0 8.8 0.00019 35.9 9.8 96 101-218 142-240 (329)
385 TIGR02279 PaaC-3OHAcCoADH 3-hy 83.9 8.8 0.00019 39.4 10.4 104 102-221 4-122 (503)
386 KOG2798 Putative trehalase [Ca 83.9 1.9 4E-05 41.4 5.0 109 103-221 151-297 (369)
387 cd05278 FDH_like Formaldehyde 83.8 8.4 0.00018 36.4 9.7 98 101-218 166-266 (347)
388 PRK14806 bifunctional cyclohex 83.7 38 0.00083 36.2 15.6 92 103-219 3-96 (735)
389 KOG1501 Arginine N-methyltrans 83.7 2.1 4.6E-05 42.9 5.4 54 105-162 69-122 (636)
390 PRK07417 arogenate dehydrogena 83.6 38 0.00083 31.6 14.0 88 105-220 2-91 (279)
391 TIGR02825 B4_12hDH leukotriene 83.5 10 0.00022 35.7 10.1 97 101-219 137-237 (325)
392 PRK06223 malate dehydrogenase; 83.3 16 0.00035 34.5 11.4 78 104-187 3-82 (307)
393 cd08238 sorbose_phosphate_red 83.2 12 0.00025 37.0 10.7 103 102-218 175-287 (410)
394 PF10237 N6-adenineMlase: Prob 82.8 13 0.00028 32.3 9.5 95 101-218 24-122 (162)
395 PLN02740 Alcohol dehydrogenase 82.7 13 0.00028 36.2 10.7 45 101-145 197-242 (381)
396 PRK08306 dipicolinate synthase 82.6 10 0.00023 36.0 9.7 86 102-216 151-238 (296)
397 COG4017 Uncharacterized protei 82.5 2.4 5.3E-05 37.9 4.9 66 99-184 41-107 (254)
398 PRK06141 ornithine cyclodeamin 82.2 47 0.001 31.7 14.2 113 59-185 84-199 (314)
399 TIGR03201 dearomat_had 6-hydro 82.1 9.8 0.00021 36.4 9.5 44 101-145 165-209 (349)
400 cd05293 LDH_1 A subgroup of L- 81.9 25 0.00054 33.7 12.1 109 102-219 2-120 (312)
401 COG1565 Uncharacterized conser 81.9 2.5 5.5E-05 41.3 5.2 48 100-147 75-130 (370)
402 PRK12749 quinate/shikimate deh 81.7 14 0.0003 35.0 10.1 37 101-137 122-159 (288)
403 cd05292 LDH_2 A subgroup of L- 81.5 20 0.00043 34.2 11.3 107 105-219 2-116 (308)
404 COG0270 Dcm Site-specific DNA 81.4 5.6 0.00012 38.3 7.5 124 103-241 3-138 (328)
405 PF11968 DUF3321: Putative met 81.4 2.5 5.3E-05 38.5 4.6 91 103-219 52-149 (219)
406 KOG1269 SAM-dependent methyltr 81.3 3 6.5E-05 41.0 5.6 104 102-218 110-214 (364)
407 cd08254 hydroxyacyl_CoA_DH 6-h 81.3 9.8 0.00021 35.6 9.1 98 101-219 164-263 (338)
408 PLN02256 arogenate dehydrogena 81.0 52 0.0011 31.4 15.6 169 101-306 34-217 (304)
409 cd08232 idonate-5-DH L-idonate 80.9 12 0.00025 35.4 9.5 96 102-218 165-261 (339)
410 PF00106 adh_short: short chai 80.8 17 0.00037 30.2 9.5 76 104-185 1-90 (167)
411 PRK12439 NAD(P)H-dependent gly 80.7 29 0.00063 33.5 12.2 143 101-266 5-160 (341)
412 PRK13699 putative methylase; P 80.7 5.3 0.00011 36.5 6.7 46 100-147 161-206 (227)
413 PRK06545 prephenate dehydrogen 80.7 58 0.0013 31.7 15.7 92 104-220 1-95 (359)
414 TIGR01035 hemA glutamyl-tRNA r 80.3 18 0.00038 36.2 10.8 99 101-222 178-279 (417)
415 PRK08507 prephenate dehydrogen 80.1 37 0.0008 31.5 12.4 89 105-221 2-92 (275)
416 COG4565 CitB Response regulato 80.1 20 0.00042 32.7 9.8 76 128-219 2-82 (224)
417 PRK12549 shikimate 5-dehydroge 79.8 27 0.00059 32.9 11.4 75 101-184 125-201 (284)
418 PRK10669 putative cation:proto 79.7 8.7 0.00019 39.8 8.7 93 104-219 418-515 (558)
419 PRK06046 alanine dehydrogenase 79.6 48 0.001 31.8 13.3 113 59-185 88-203 (326)
420 TIGR02822 adh_fam_2 zinc-bindi 79.5 17 0.00036 34.7 10.0 44 101-145 164-208 (329)
421 PRK00045 hemA glutamyl-tRNA re 79.5 20 0.00044 35.8 10.9 101 101-222 180-282 (423)
422 PRK03659 glutathione-regulated 79.5 8.1 0.00018 40.5 8.4 94 104-220 401-499 (601)
423 PLN03154 putative allyl alcoho 79.4 15 0.00032 35.4 9.8 97 101-218 157-257 (348)
424 PRK15076 alpha-galactosidase; 79.3 14 0.00031 37.0 9.8 76 104-184 2-84 (431)
425 PRK06949 short chain dehydroge 79.2 13 0.00029 33.3 8.9 77 102-184 8-95 (258)
426 PLN02827 Alcohol dehydrogenase 79.1 19 0.00042 35.1 10.5 99 101-219 192-295 (378)
427 TIGR01627 A_thal_3515 uncharac 78.8 18 0.00039 32.9 9.1 51 95-147 32-82 (225)
428 cd01488 Uba3_RUB Ubiquitin act 78.7 8.2 0.00018 36.8 7.4 33 105-137 1-34 (291)
429 cd01065 NAD_bind_Shikimate_DH 78.4 15 0.00032 30.6 8.3 74 101-186 17-92 (155)
430 PTZ00075 Adenosylhomocysteinas 78.4 50 0.0011 33.7 13.3 88 102-220 253-341 (476)
431 cd08295 double_bond_reductase_ 78.4 21 0.00046 33.8 10.4 97 101-218 150-250 (338)
432 COG1748 LYS9 Saccharopine dehy 78.4 8.7 0.00019 38.1 7.8 74 104-185 2-78 (389)
433 PRK05600 thiamine biosynthesis 78.3 8 0.00017 38.1 7.5 34 102-135 40-74 (370)
434 PF05711 TylF: Macrocin-O-meth 78.1 37 0.0008 31.6 11.4 109 100-219 72-212 (248)
435 TIGR01408 Ube1 ubiquitin-activ 77.9 7.2 0.00016 43.5 7.7 51 84-136 3-58 (1008)
436 PF11899 DUF3419: Protein of u 77.7 5.7 0.00012 39.3 6.3 44 99-144 32-75 (380)
437 PRK11199 tyrA bifunctional cho 77.5 34 0.00073 33.6 11.7 78 101-221 96-176 (374)
438 PRK08945 putative oxoacyl-(acy 77.3 21 0.00046 32.0 9.6 76 102-184 11-101 (247)
439 cd05285 sorbitol_DH Sorbitol d 77.2 19 0.00041 34.2 9.7 98 101-218 161-264 (343)
440 COG4798 Predicted methyltransf 76.6 4.2 9.1E-05 36.6 4.5 114 101-218 47-165 (238)
441 COG0677 WecC UDP-N-acetyl-D-ma 76.6 28 0.00061 34.7 10.5 106 104-222 10-131 (436)
442 PRK07904 short chain dehydroge 76.2 20 0.00043 32.7 9.2 80 100-184 5-96 (253)
443 TIGR03376 glycerol3P_DH glycer 76.1 80 0.0017 30.7 14.1 146 105-268 1-168 (342)
444 PF11899 DUF3419: Protein of u 75.9 4.8 0.0001 39.8 5.2 58 156-219 275-334 (380)
445 PRK06194 hypothetical protein; 75.7 21 0.00044 32.9 9.3 76 103-185 6-93 (287)
446 PRK12921 2-dehydropantoate 2-r 75.6 18 0.0004 33.8 9.0 92 105-216 2-99 (305)
447 PRK08328 hypothetical protein; 75.5 4.1 8.9E-05 37.3 4.4 35 102-136 26-61 (231)
448 COG0604 Qor NADPH:quinone redu 74.7 16 0.00034 35.2 8.4 97 101-219 141-241 (326)
449 cd08277 liver_alcohol_DH_like 74.7 36 0.00079 32.8 11.0 45 101-145 183-228 (365)
450 TIGR01763 MalateDH_bact malate 74.6 35 0.00077 32.5 10.7 76 104-187 2-81 (305)
451 cd01339 LDH-like_MDH L-lactate 74.3 23 0.0005 33.5 9.3 105 106-219 1-115 (300)
452 PF03435 Saccharop_dh: Sacchar 74.1 11 0.00024 36.8 7.3 72 106-184 1-76 (386)
453 PRK12829 short chain dehydroge 74.1 48 0.001 29.8 11.1 76 101-184 9-95 (264)
454 TIGR01381 E1_like_apg7 E1-like 74.0 4.1 8.8E-05 42.9 4.3 34 103-136 338-372 (664)
455 PRK06172 short chain dehydroge 74.0 53 0.0011 29.4 11.4 75 102-184 6-93 (253)
456 PRK06129 3-hydroxyacyl-CoA deh 74.0 19 0.00041 34.2 8.6 98 104-216 3-115 (308)
457 PRK14620 NAD(P)H-dependent gly 74.0 49 0.0011 31.5 11.6 100 105-220 2-108 (326)
458 PRK14027 quinate/shikimate deh 73.6 54 0.0012 30.9 11.6 64 75-141 101-166 (283)
459 TIGR01809 Shik-DH-AROM shikima 73.6 29 0.00063 32.7 9.7 38 102-139 124-162 (282)
460 TIGR03029 EpsG chain length de 73.5 76 0.0016 29.3 12.8 16 169-184 206-221 (274)
461 PRK05708 2-dehydropantoate 2-r 73.0 23 0.00049 33.7 9.0 97 104-220 3-106 (305)
462 cd01491 Ube1_repeat1 Ubiquitin 73.0 9.6 0.00021 36.2 6.3 34 102-136 18-53 (286)
463 PRK07102 short chain dehydroge 73.0 22 0.00047 31.8 8.5 74 104-184 2-85 (243)
464 cd08278 benzyl_alcohol_DH Benz 72.9 48 0.001 31.9 11.4 99 101-219 185-285 (365)
465 PLN02427 UDP-apiose/xylose syn 72.8 14 0.0003 36.0 7.6 78 102-184 13-95 (386)
466 cd08233 butanediol_DH_like (2R 72.8 43 0.00093 31.8 11.0 99 101-219 171-272 (351)
467 PRK15181 Vi polysaccharide bio 72.7 9 0.00019 36.8 6.2 81 102-184 14-99 (348)
468 PF02558 ApbA: Ketopantoate re 72.6 33 0.00072 28.4 9.0 95 106-217 1-99 (151)
469 PF02056 Glyco_hydro_4: Family 72.5 14 0.00031 32.7 6.9 71 105-184 1-82 (183)
470 KOG2793 Putative N2,N2-dimethy 72.4 7.2 0.00016 36.3 5.1 42 102-145 86-127 (248)
471 PRK06153 hypothetical protein; 72.3 4.6 9.9E-05 40.0 4.0 34 102-135 175-209 (393)
472 PF03807 F420_oxidored: NADP o 72.2 40 0.00087 25.5 9.1 87 105-216 1-91 (96)
473 PRK10458 DNA cytosine methylas 72.2 13 0.00028 37.9 7.3 127 103-241 88-250 (467)
474 cd01493 APPBP1_RUB Ubiquitin a 72.2 12 0.00026 37.6 7.1 33 102-136 19-54 (425)
475 PRK07454 short chain dehydroge 72.0 34 0.00073 30.5 9.5 75 102-184 5-92 (241)
476 PLN00203 glutamyl-tRNA reducta 71.6 53 0.0011 33.9 11.7 101 103-222 266-371 (519)
477 PRK09422 ethanol-active dehydr 71.5 54 0.0012 30.8 11.2 99 101-218 161-260 (338)
478 PRK08213 gluconate 5-dehydroge 71.5 22 0.00048 32.1 8.2 77 102-184 11-98 (259)
479 TIGR03693 ocin_ThiF_like putat 71.5 16 0.00035 38.3 7.9 76 102-187 128-216 (637)
480 PRK06249 2-dehydropantoate 2-r 71.2 50 0.0011 31.3 10.9 98 102-217 4-104 (313)
481 PRK00258 aroE shikimate 5-dehy 71.0 24 0.00052 33.0 8.5 73 101-186 121-196 (278)
482 cd00300 LDH_like L-lactate deh 71.0 26 0.00056 33.3 8.8 75 106-187 1-78 (300)
483 PRK07523 gluconate 5-dehydroge 70.9 27 0.00058 31.5 8.6 78 102-185 9-97 (255)
484 TIGR01757 Malate-DH_plant mala 70.9 44 0.00096 33.1 10.6 114 99-218 40-169 (387)
485 cd05279 Zn_ADH1 Liver alcohol 70.9 38 0.00082 32.6 10.1 98 101-218 182-284 (365)
486 PRK05867 short chain dehydroge 70.7 29 0.00064 31.2 8.9 76 102-184 8-95 (253)
487 COG0169 AroE Shikimate 5-dehyd 70.7 28 0.00062 33.0 8.9 71 76-147 99-171 (283)
488 TIGR00497 hsdM type I restrict 70.7 28 0.00061 35.6 9.5 109 104-215 219-351 (501)
489 PRK15057 UDP-glucose 6-dehydro 70.7 1.1E+02 0.0024 30.2 13.5 106 105-220 2-118 (388)
490 PLN02819 lysine-ketoglutarate 70.6 20 0.00043 40.1 8.9 77 102-185 568-658 (1042)
491 PRK12548 shikimate 5-dehydroge 70.6 25 0.00054 33.2 8.6 76 101-184 124-208 (289)
492 PLN02602 lactate dehydrogenase 70.6 49 0.0011 32.3 10.8 109 104-219 38-154 (350)
493 TIGR02819 fdhA_non_GSH formald 70.6 55 0.0012 32.2 11.3 108 101-219 184-299 (393)
494 PRK06124 gluconate 5-dehydroge 70.4 41 0.00088 30.2 9.7 77 102-184 10-97 (256)
495 PRK08163 salicylate hydroxylas 70.1 5.3 0.00011 38.9 4.0 36 102-137 3-38 (396)
496 cd08234 threonine_DH_like L-th 69.9 40 0.00086 31.6 9.9 95 101-218 158-256 (334)
497 KOG1198 Zinc-binding oxidoredu 69.7 12 0.00026 36.5 6.4 76 101-184 156-234 (347)
498 PRK00094 gpsA NAD(P)H-dependen 69.5 76 0.0016 29.8 11.7 95 105-216 3-102 (325)
499 KOG3851 Sulfide:quinone oxidor 69.4 4.8 0.0001 39.0 3.3 47 86-136 26-74 (446)
500 PRK08217 fabG 3-ketoacyl-(acyl 69.4 44 0.00095 29.7 9.7 75 102-184 4-91 (253)
No 1
>PLN02823 spermine synthase
Probab=100.00 E-value=7.2e-66 Score=493.59 Aligned_cols=330 Identities=73% Similarity=1.218 Sum_probs=295.4
Q ss_pred ceeeecCCcccccccccccccC-CccccceEEeeeccchhcccccccEEEEeecCCCeEEEEEeCCCceEEEEcCccccc
Q 019699 3 EISCSNGISQANGADAKNVALT-GYRKSCWYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSA 81 (337)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~w~~e~~~~~~~~~~~~~~~l~~~~s~~q~I~V~~~~~~G~~L~lDG~~q~~ 81 (337)
||--.||.|........+-++. .+....|++|.+.++.++.++++++|++++|+||+|+|++++.+|++|++||..|++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~e~~~~~~~~~~~~~~vl~~~~S~yQ~I~V~~~~~~g~~L~lDg~~qs~ 82 (336)
T PLN02823 3 EIVHGNGTSHITAVATPTAALASNYAKSLWYEEEIEDDLRWSYAVNSVLHTGTSEFQDIALVDTKPFGKVLIIDGKMQSA 82 (336)
T ss_pred ceeccCCcccccCCCCcccccccccccCeeEeeccCCCcceEEEeccEEEeccCCCeEEEEEECCCCceEEEECCccccc
Confidence 5667788776544333332222 223678999999999999999999999999999999999999999999999999999
Q ss_pred cCChhhHHHHHHhHHHhcCCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEE
Q 019699 82 EVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELV 161 (337)
Q Consensus 82 ~~de~~Y~e~l~~~~l~~~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~ 161 (337)
+.|++.|||+|+|+|++.|++|++||+||+|+|++++++++|++..+|++||||++|+++||+||+.+.+.++|||++++
T Consensus 83 ~~de~~YhE~l~h~~l~~~~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~ 162 (336)
T PLN02823 83 EADEFVYHESLVHPALLHHPNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELI 162 (336)
T ss_pred cchHHHHHHHHHhHHHhhCCCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEE
Confidence 99999999999999999999999999999999999999999988899999999999999999999876666889999999
Q ss_pred EccHHHHHhhcCCceeEEEEeCCCCCCCCCCcCCchHHHHH-HHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhh
Q 019699 162 INDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYE-FVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQ 240 (337)
Q Consensus 162 ~~D~~~~l~~~~~~yDvIi~D~~dp~~~~p~~~L~t~ef~~-~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~ 240 (337)
++||++||+...++||+||+|+++|...+|+.+|||.|||+ . ++++|+|||++++|.+++..+.+.+.++.+++++++
T Consensus 163 ~~Da~~~L~~~~~~yDvIi~D~~dp~~~~~~~~Lyt~eF~~~~-~~~~L~p~Gvlv~q~~s~~~~~~~~~~~~i~~tl~~ 241 (336)
T PLN02823 163 INDARAELEKRDEKFDVIIGDLADPVEGGPCYQLYTKSFYERI-VKPKLNPGGIFVTQAGPAGILTHKEVFSSIYNTLRQ 241 (336)
T ss_pred EChhHHHHhhCCCCccEEEecCCCccccCcchhhccHHHHHHH-HHHhcCCCcEEEEeccCcchhccHHHHHHHHHHHHH
Confidence 99999999887889999999999987656777899999998 8 799999999999999876545567889999999999
Q ss_pred hcCceeEEEeeccccCCceEEEEEecCCCC-CCHHHHHHHHHhccCCCceeeCHHHHHHhccCcHHHHHhhcCCCccccc
Q 019699 241 VFKYVVPYSAHIPSFADTWGWIMASDSPFT-LSAEELDMKVKKNIKGENRYLDGKTISSSSTLSKAVRKSLDNETQVYTE 319 (337)
Q Consensus 241 vF~~v~~~~~~vP~~~~~~~~~~as~~p~~-~~~~~l~~r~~~~~~~~l~yy~~~~h~~~f~lP~~~~~~l~~~~~~~t~ 319 (337)
+||+|.+|.+.+|+|++.|+|++||+.|.. ++++.+.+|+.++...++||||+++|+++|+||+++++.|..+.+|+|+
T Consensus 242 vF~~v~~y~~~vPsf~~~w~f~~aS~~~~~~~~~~~~~~~~~~~~~~~lryy~~~~h~a~F~lP~~~~~~l~~~~~v~t~ 321 (336)
T PLN02823 242 VFKYVVPYTAHVPSFADTWGWVMASDHPFADLSAEELDSRIKERIDGELKYLDGETFSSAFALNKTVRQALANETHVYTE 321 (336)
T ss_pred hCCCEEEEEeecCCCCCceEEEEEeCCccccCChhHHHHhhhhcccCCCeEECHHHHHHHccCcHHHHHhhcCCCCceec
Confidence 999999999999999888999999998753 7778888888776556799999999999999999999999999999999
Q ss_pred CCcccccccccccc
Q 019699 320 GSARFIYGYGSALK 333 (337)
Q Consensus 320 ~~~~~~~~~~~~~~ 333 (337)
++|+++.++|.|-|
T Consensus 322 ~~p~~~~~~~~~~~ 335 (336)
T PLN02823 322 ENARFIHGHGTAAK 335 (336)
T ss_pred CCCeeecCcccccC
Confidence 99999999998876
No 2
>PRK00536 speE spermidine synthase; Provisional
Probab=100.00 E-value=1.2e-62 Score=455.28 Aligned_cols=258 Identities=18% Similarity=0.250 Sum_probs=230.2
Q ss_pred ceEEeeeccchhcccccccEEEEeecCCCeEEEEEeCCCceEEEEcCccccccCChhhHHHHHHhHHHhcCCCCCeEEEE
Q 019699 30 CWYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIM 109 (337)
Q Consensus 30 ~w~~e~~~~~~~~~~~~~~~l~~~~s~~q~I~V~~~~~~G~~L~lDG~~q~~~~de~~Y~e~l~~~~l~~~~~p~~VLiI 109 (337)
+|++|..+++.+++++++++|++++|+||+|+|+++..|||+|.|| ..|++++|||+|||||+|+||+.|++|+|||+|
T Consensus 1 ~w~~e~~~~~~~~~~~v~~~L~~~kS~~Q~i~i~es~~fGr~LvLD-~~~~te~dEfiYHEmLvHppl~~h~~pk~VLIi 79 (262)
T PRK00536 1 MWITQEITPYLRKEYTIEAKLLDVRSEHNILEIFKSKDFGEIAMLN-KQLLFKNFLHIESELLAHMGGCTKKELKEVLIV 79 (262)
T ss_pred CceEEecCCCceEEEEEEEEEEccCCCCcEEEEEEccccccEEEEe-eeeeecchhhhHHHHHHHHHHhhCCCCCeEEEE
Confidence 5999999999999999999999999999999999999999999999 666799999999999999999999999999999
Q ss_pred ecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEEEeCCCCCCC
Q 019699 110 GGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEG 189 (337)
Q Consensus 110 G~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~D~~dp~~~ 189 (337)
|||+|+++||++||+ .+|++||||++|+++||+|||...++++|||+++++ .+.+...++||+||+|++
T Consensus 80 GGGDGg~~REvLkh~--~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~----~~~~~~~~~fDVIIvDs~----- 148 (262)
T PRK00536 80 DGFDLELAHQLFKYD--THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAK----QLLDLDIKKYDLIICLQE----- 148 (262)
T ss_pred cCCchHHHHHHHCcC--CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEee----hhhhccCCcCCEEEEcCC-----
Confidence 999999999999996 499999999999999999999766789999999997 233333478999999964
Q ss_pred CCCcCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhhcCceeEEEeeccccCCceEEEEEecCCC
Q 019699 190 GPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSFADTWGWIMASDSPF 269 (337)
Q Consensus 190 ~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~vF~~v~~~~~~vP~~~~~~~~~~as~~p~ 269 (337)
++.+||+. ++++|+|||++++|+++| +.+.+.++.+.++++++|+.+.+|.+++|+| +.|+|++||++++
T Consensus 149 ------~~~~fy~~-~~~~L~~~Gi~v~Qs~sp--~~~~~~~~~i~~~l~~~F~~v~~y~~~vp~~-g~wgf~~aS~~~~ 218 (262)
T PRK00536 149 ------PDIHKIDG-LKRMLKEDGVFISVAKHP--LLEHVSMQNALKNMGDFFSIAMPFVAPLRIL-SNKGYIYASFKTH 218 (262)
T ss_pred ------CChHHHHH-HHHhcCCCcEEEECCCCc--ccCHHHHHHHHHHHHhhCCceEEEEecCCCc-chhhhheecCCCC
Confidence 34699998 899999999999999998 6688999999999999999999999999999 5799999999876
Q ss_pred CCCHHHHHHHHHhccCCCceeeCHHHHHHhccCcHHHHHhhcC
Q 019699 270 TLSAEELDMKVKKNIKGENRYLDGKTISSSSTLSKAVRKSLDN 312 (337)
Q Consensus 270 ~~~~~~l~~r~~~~~~~~l~yy~~~~h~~~f~lP~~~~~~l~~ 312 (337)
+.. +.+.+|+.. ...|||||+++|+++|+||++++++|..
T Consensus 219 p~~-~~~~~~~~~--~~~lryy~~~~h~a~F~lP~~v~~~l~~ 258 (262)
T PRK00536 219 PLK-DLMLQKIEA--LKSVRYYNEDIHRAAFALPKNLQEVFKD 258 (262)
T ss_pred Ccc-chhhhhhcc--cCCceeeCHHHHHHHhcCcHHHHHHHHH
Confidence 542 223344332 2459999999999999999999999864
No 3
>PLN02366 spermidine synthase
Probab=100.00 E-value=1.6e-59 Score=445.59 Aligned_cols=283 Identities=29% Similarity=0.551 Sum_probs=248.4
Q ss_pred ccccceEEee--eccchhcccccccEEEEeecCCCeEEEEEeCCCceEEEEcCccccccCChhhHHHHHHhHHHhcCCCC
Q 019699 26 YRKSCWYEEE--IEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNP 103 (337)
Q Consensus 26 ~~~~~w~~e~--~~~~~~~~~~~~~~l~~~~s~~q~I~V~~~~~~G~~L~lDG~~q~~~~de~~Y~e~l~~~~l~~~~~p 103 (337)
+..+.|++|. .+++.+.+++++++|++++|+||+|.|++++.+|++|+|||.+|++++|++.|||||+|+|++.|++|
T Consensus 13 ~~~~~w~~e~~~~~~~~~~~~~v~~~l~~~~s~yQ~i~v~~~~~~g~~L~lDg~~q~~~~de~~Y~e~l~h~~l~~~~~p 92 (308)
T PLN02366 13 TVIPGWFSEISPMWPGEAHSLKVEKVLFQGKSDFQDVLVFESATYGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPNP 92 (308)
T ss_pred hhhhceEeecccCCCCceEEEEEeeEEEeccCCCeeEEEEEcCCCceEEEECCEeeecCccHHHHHHHHHHHHHhhCCCC
Confidence 4568999998 45778899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhc-CCceeEEEEe
Q 019699 104 KTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR-KESYDVIIGD 182 (337)
Q Consensus 104 ~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~-~~~yDvIi~D 182 (337)
++||+||||+|++++++++|+++.+|++||||++|+++||+||+.....++|||++++++||++|+++. +++||+||+|
T Consensus 93 krVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvIi~D 172 (308)
T PLN02366 93 KKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAIIVD 172 (308)
T ss_pred CeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEEEEc
Confidence 999999999999999999998889999999999999999999985444578999999999999999876 5789999999
Q ss_pred CCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhhc-CceeEEEeeccccC-CceE
Q 019699 183 LADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVF-KYVVPYSAHIPSFA-DTWG 260 (337)
Q Consensus 183 ~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~vF-~~v~~~~~~vP~~~-~~~~ 260 (337)
+++|. +|+..|++.+||+. ++++|+|||++++|.+++ |.+.+.++.+.++++++| +.+..|.+.+|+|+ +.|+
T Consensus 173 ~~dp~--~~~~~L~t~ef~~~-~~~~L~pgGvlv~q~~s~--~~~~~~~~~i~~tl~~~F~~~v~~~~~~vPsy~~g~w~ 247 (308)
T PLN02366 173 SSDPV--GPAQELFEKPFFES-VARALRPGGVVCTQAESM--WLHMDLIEDLIAICRETFKGSVNYAWTTVPTYPSGVIG 247 (308)
T ss_pred CCCCC--CchhhhhHHHHHHH-HHHhcCCCcEEEECcCCc--ccchHHHHHHHHHHHHHCCCceeEEEecCCCcCCCceE
Confidence 99987 67789999999999 899999999999999887 778889999999999999 57888889999995 6799
Q ss_pred EEEEecC-CCC-C-CH-HHHHH-HHHhccCCCceeeCHHHHHHhccCcHHHHHhhcCC
Q 019699 261 WIMASDS-PFT-L-SA-EELDM-KVKKNIKGENRYLDGKTISSSSTLSKAVRKSLDNE 313 (337)
Q Consensus 261 ~~~as~~-p~~-~-~~-~~l~~-r~~~~~~~~l~yy~~~~h~~~f~lP~~~~~~l~~~ 313 (337)
|++||++ +.. + .+ +.... +.+.+...+|||||+++|+++|+||+|++++|+..
T Consensus 248 f~~as~~~~~~~~~~~~~~~~~~~~~~~~~~~l~yy~~~~h~~~f~lp~~~~~~l~~~ 305 (308)
T PLN02366 248 FVLCSKEGPAVDFKHPVNPIDKLEGAGKAKRPLKFYNSEVHRAAFCLPSFAKRELESL 305 (308)
T ss_pred EEEEECCCccccccccccccchhhhhhcccCCCeEECHHHHHHHhcChHHHHHHHHhc
Confidence 9999997 211 0 00 11111 22223235799999999999999999999998753
No 4
>PRK00811 spermidine synthase; Provisional
Probab=100.00 E-value=3.9e-59 Score=439.63 Aligned_cols=278 Identities=37% Similarity=0.695 Sum_probs=251.0
Q ss_pred ccceEEeeeccchhcccccccEEEEeecCCCeEEEEEeCCCceEEEEcCccccccCChhhHHHHHHhHHHhcCCCCCeEE
Q 019699 28 KSCWYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIF 107 (337)
Q Consensus 28 ~~~w~~e~~~~~~~~~~~~~~~l~~~~s~~q~I~V~~~~~~G~~L~lDG~~q~~~~de~~Y~e~l~~~~l~~~~~p~~VL 107 (337)
..+||+|..+++.++.++++++|++++|+||+|.|++++++|++|++||..|+++++++.|||+|+|+|++.|++|++||
T Consensus 2 ~~~w~~e~~~~~~~~~~~~~~~l~~~~s~yq~i~v~~~~~~g~~l~lDg~~q~~~~de~~Y~e~l~h~~~~~~~~p~~VL 81 (283)
T PRK00811 2 MELWFTETLTDNYGQSFRVKKVLYEEKSPFQRIEIFETPEFGRLLALDGCVMTTERDEFIYHEMMTHVPLFAHPNPKRVL 81 (283)
T ss_pred CCcceeeccCCccceEEeeccEEEEcCCCCeeEEEEEcCCccEEEEECCeeeecCcchhhHHHHhhhHHHhhCCCCCEEE
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhh-ccCCCCCCCeEEEEccHHHHHhhcCCceeEEEEeCCCC
Q 019699 108 IMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVV-NKEAFSDPRLELVINDARAELESRKESYDVIIGDLADP 186 (337)
Q Consensus 108 iIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~-~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~D~~dp 186 (337)
+||||+|+++++++++++..+|++||||++++++|+++|+. ..+.+++||++++++||++|++...++||+||+|+++|
T Consensus 82 ~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi~D~~dp 161 (283)
T PRK00811 82 IIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVIIVDSTDP 161 (283)
T ss_pred EEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEEEECCCCC
Confidence 99999999999999998788999999999999999999974 33445799999999999999988778999999999998
Q ss_pred CCCCCCcCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhhcCceeEEEeecccc-CCceEEEEEe
Q 019699 187 IEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSF-ADTWGWIMAS 265 (337)
Q Consensus 187 ~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~vF~~v~~~~~~vP~~-~~~~~~~~as 265 (337)
. +|+..|++.+||+. ++++|+|||++++|.++| +.+.+.++.+.++++++|++|.+|...+|+| ++.|+|++||
T Consensus 162 ~--~~~~~l~t~ef~~~-~~~~L~~gGvlv~~~~~~--~~~~~~~~~i~~tl~~~F~~v~~~~~~vp~~~~~~w~f~~as 236 (283)
T PRK00811 162 V--GPAEGLFTKEFYEN-CKRALKEDGIFVAQSGSP--FYQADEIKDMHRKLKEVFPIVRPYQAAIPTYPSGLWSFTFAS 236 (283)
T ss_pred C--CchhhhhHHHHHHH-HHHhcCCCcEEEEeCCCc--ccCHHHHHHHHHHHHHHCCCEEEEEeECCcccCchheeEEee
Confidence 7 67679999999999 899999999999998877 5567889999999999999999999999999 5679999999
Q ss_pred cCCC--CCCHHHHHHHHHhccCCCceeeCHHHHHHhccCcHHHHHhhc
Q 019699 266 DSPF--TLSAEELDMKVKKNIKGENRYLDGKTISSSSTLSKAVRKSLD 311 (337)
Q Consensus 266 ~~p~--~~~~~~l~~r~~~~~~~~l~yy~~~~h~~~f~lP~~~~~~l~ 311 (337)
+.+. ..+.+.+.+|+.++. .++||||+++|+++|+||+++|++|+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~-~~~~yy~~~~h~~~f~lp~~~~~~~~ 283 (283)
T PRK00811 237 KNDDLKFLPLDVIEARFAERG-IKTRYYNPELHKAAFALPQFVKDALK 283 (283)
T ss_pred cCcccccCccccchhhHhhcc-CCCeEECHHHHHHHhcCcHHHHHhhC
Confidence 9532 233455666776542 36999999999999999999999874
No 5
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=3e-58 Score=430.33 Aligned_cols=277 Identities=38% Similarity=0.713 Sum_probs=251.3
Q ss_pred ccceEEeeeccchhcccccccEEEEeecCCCeEEEEEeCCCceEEEEcCccccccCChhhHHHHHHhHHHhcCCCCCeEE
Q 019699 28 KSCWYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIF 107 (337)
Q Consensus 28 ~~~w~~e~~~~~~~~~~~~~~~l~~~~s~~q~I~V~~~~~~G~~L~lDG~~q~~~~de~~Y~e~l~~~~l~~~~~p~~VL 107 (337)
.++|+.|..+++.+..+++++++++++|.||+|.++++..+|++|.+||..|+++++++.||||++|+|++.|++|++||
T Consensus 2 ~~~w~~e~~~~~~~~~~~v~~~l~~~ks~~q~i~i~~~~~~g~~l~ldg~~q~~e~de~~yhEml~h~~~~ah~~pk~VL 81 (282)
T COG0421 2 ADMWFTELYDPGLRLMFRVERVLYEEKSEYQDIEIFESEDFGKVLVLDGVVQLTERDEFIYHEMLAHVPLLAHPNPKRVL 81 (282)
T ss_pred CccceeeeecccccceeEeeeeeeeccCCceEEEEEeccccceEEEecChhhhccchhHHHHHHHHhchhhhCCCCCeEE
Confidence 57899999998999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEEEeCCCCC
Q 019699 108 IMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPI 187 (337)
Q Consensus 108 iIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~D~~dp~ 187 (337)
+||||+|+++|++++|.+++++++||||++|+++||+||+.......|||++++++||++|++++.++||+||+|++||.
T Consensus 82 iiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D~tdp~ 161 (282)
T COG0421 82 IIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIVDSTDPV 161 (282)
T ss_pred EECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEEcCCCCC
Confidence 99999999999999999999999999999999999999997654445999999999999999998889999999999995
Q ss_pred CCCCCcCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhhcCceeEEEeeccccC-CceEEEEEe-
Q 019699 188 EGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSFA-DTWGWIMAS- 265 (337)
Q Consensus 188 ~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~vF~~v~~~~~~vP~~~-~~~~~~~as- 265 (337)
+|+..|||.+||+. |+++|+++|++++|+++| +.+.+.+..+.+.++.+|+.+.+|...+|+|+ +.|+|+++|
T Consensus 162 --gp~~~Lft~eFy~~-~~~~L~~~Gi~v~q~~~~--~~~~~~~~~~~~~~~~vf~~~~~~~~~ipt~~~g~~~f~~~s~ 236 (282)
T COG0421 162 --GPAEALFTEEFYEG-CRRALKEDGIFVAQAGSP--FLQDEEIALAYRNVSRVFSIVPPYVAPIPTYPSGFWGFIVASF 236 (282)
T ss_pred --CcccccCCHHHHHH-HHHhcCCCcEEEEecCCc--ccchHHHHHHHHHHHhhccccccceeccceecCCceEEEEeec
Confidence 89999999999999 899999999999999887 67778899999999999999999999999996 459999999
Q ss_pred cCCCCCCH-HHHHHHHHhccCCCceeeCHHHHHHhccCcHHHHHhhc
Q 019699 266 DSPFTLSA-EELDMKVKKNIKGENRYLDGKTISSSSTLSKAVRKSLD 311 (337)
Q Consensus 266 ~~p~~~~~-~~l~~r~~~~~~~~l~yy~~~~h~~~f~lP~~~~~~l~ 311 (337)
+.++++.. +....|... ...++|||+++|.++|+||+++++.++
T Consensus 237 ~~~~~~~~~~~~~~~~~~--~~~~~yy~~~~h~~~f~lp~~~~~~~~ 281 (282)
T COG0421 237 NKAHPLKSLDALQARALA--LLTLKYYNEDIHDAAFALPKNLQDELK 281 (282)
T ss_pred CCCCcccchhHHHHHHhh--hhhhccCcHHHhhhhhcCCcchhhhcc
Confidence 55555432 222222221 246799999999999999999998875
No 6
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=100.00 E-value=1.4e-53 Score=399.49 Aligned_cols=268 Identities=35% Similarity=0.694 Sum_probs=240.9
Q ss_pred eEEeeeccchhcccccccEEEEeecCCCeEEEEEeCCCceEEEEcCccccccCChhhHHHHHHhHHHhcCCCCCeEEEEe
Q 019699 31 WYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMG 110 (337)
Q Consensus 31 w~~e~~~~~~~~~~~~~~~l~~~~s~~q~I~V~~~~~~G~~L~lDG~~q~~~~de~~Y~e~l~~~~l~~~~~p~~VLiIG 110 (337)
|++|..+++.++.++++++|++++|+||+|.|++++++|++|+|||..|+++.+++.|||+|+|++++.|++|++||+||
T Consensus 1 w~~~~~~~~~~~~~~~~~~l~~~~s~~q~i~v~~~~~~g~~l~ldg~~q~~~~~e~~y~e~l~~~~l~~~~~p~~VL~iG 80 (270)
T TIGR00417 1 WFTEYHDKNFGLTMKVKKVLYHEKSEFQDLEIFETEEFGNVLVLDGVVQTTERDEFIYHEMIAHVPLFTHPNPKHVLVIG 80 (270)
T ss_pred CceeecCCCceEEEEeeeEEEEccCCCeeEEEEEcCCCceEEEECCcccccCchHHHHHHHhhhhHhhcCCCCCEEEEEc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEEEeCCCCCCCC
Q 019699 111 GGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGG 190 (337)
Q Consensus 111 ~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~D~~dp~~~~ 190 (337)
+|+|+++++++++.+..++++||+|+++++.|+++|+...+.++++|++++++|+++|+++..++||+||+|.++|. +
T Consensus 81 ~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~D~~~~~--~ 158 (270)
T TIGR00417 81 GGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIVDSTDPV--G 158 (270)
T ss_pred CCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEEeCCCCC--C
Confidence 99999999999987778999999999999999999975445577899999999999999887889999999999886 5
Q ss_pred CCcCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhhcCceeEEEeeccccC-CceEEEEEec-CC
Q 019699 191 PCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSFA-DTWGWIMASD-SP 268 (337)
Q Consensus 191 p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~vF~~v~~~~~~vP~~~-~~~~~~~as~-~p 268 (337)
+...|++.+||+. ++++|+|||+++++.++| +...+.++.+.++++++|+++.+|.+.+|+|+ +.|+|++||+ ..
T Consensus 159 ~~~~l~~~ef~~~-~~~~L~pgG~lv~~~~~~--~~~~~~~~~~~~tl~~~F~~v~~~~~~vp~~~~g~~~~~~as~~~~ 235 (270)
T TIGR00417 159 PAETLFTKEFYEL-LKKALNEDGIFVAQSESP--WIQLELITDLKRDVKEAFPITEYYTANIPTYPSGLWTFTIGSKNKY 235 (270)
T ss_pred cccchhHHHHHHH-HHHHhCCCcEEEEcCCCc--ccCHHHHHHHHHHHHHHCCCeEEEEEEcCccccchhEEEEEECCCC
Confidence 6678999999999 899999999999998776 56788899999999999999999999999994 5799999999 33
Q ss_pred CCCCHHHHHHHHHhccCCCceeeCHHHHHHhccCcHH
Q 019699 269 FTLSAEELDMKVKKNIKGENRYLDGKTISSSSTLSKA 305 (337)
Q Consensus 269 ~~~~~~~l~~r~~~~~~~~l~yy~~~~h~~~f~lP~~ 305 (337)
.++..+ .+|++++...++||||+++|+++|+||+|
T Consensus 236 ~~~~~~--~~~~~~~~~~~~~~y~~~~h~~~f~lp~~ 270 (270)
T TIGR00417 236 DPLEVE--DRRISEFEDGKTKYYNPDIHKAAFVLPKW 270 (270)
T ss_pred CCCCcc--hhhhhhcccCCCeEECHHHHHHhcCCCCC
Confidence 343322 23455433346999999999999999975
No 7
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=100.00 E-value=4.3e-53 Score=390.72 Aligned_cols=234 Identities=46% Similarity=0.853 Sum_probs=217.0
Q ss_pred ceEEeeec---cchhcccccccEEEEeecCCCeEEEEEeCCCceEEEEcCccccccCChhhHHHHHHhHHHhcCCCCCeE
Q 019699 30 CWYEEEIE---ENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTI 106 (337)
Q Consensus 30 ~w~~e~~~---~~~~~~~~~~~~l~~~~s~~q~I~V~~~~~~G~~L~lDG~~q~~~~de~~Y~e~l~~~~l~~~~~p~~V 106 (337)
+||+|+++ ++.+.+|+++++|++++|+||+|+|++++.+|++|+|||..|+++++++.|||+|+|+|++.|++|++|
T Consensus 1 ~w~~e~~~~~~~~~~~~~~v~~vl~~~~s~yQ~i~i~~~~~~G~~l~ldg~~q~~e~de~~y~e~l~h~~~~~~~~p~~V 80 (246)
T PF01564_consen 1 MWFTEYYSQFDPGLGVSYRVEEVLYEEKSPYQHIEIFESSPFGRILVLDGDVQLSERDEFIYHEMLVHPPLLLHPNPKRV 80 (246)
T ss_dssp TEEEEEET-TSTTEEEEEEEEEEEEEEEESSSEEEEEEETTTEEEEEETTEEEEETTTHHHHHHHHHHHHHHHSSST-EE
T ss_pred CeEEEEeccCCCCceEEEEEEEEEEccCCCCCcEEEEEecCcCcEEEECCeEEEEEechHHHHHHHhhhHhhcCCCcCce
Confidence 69999998 899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCC-ceeEEEEeCCC
Q 019699 107 FIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKE-SYDVIIGDLAD 185 (337)
Q Consensus 107 LiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~-~yDvIi~D~~d 185 (337)
|+||+|+|++++++++|++.++|++|||||.|+++|++||+.....++|||++++++||+.||++..+ +||+||+|+++
T Consensus 81 LiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvIi~D~~d 160 (246)
T PF01564_consen 81 LIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVIIVDLTD 160 (246)
T ss_dssp EEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEEEEESSS
T ss_pred EEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEEEEeCCC
Confidence 99999999999999999888999999999999999999998655557899999999999999999887 99999999999
Q ss_pred CCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhhcCceeEEEeeccccCC-ceEEEEE
Q 019699 186 PIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSFAD-TWGWIMA 264 (337)
Q Consensus 186 p~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~vF~~v~~~~~~vP~~~~-~~~~~~a 264 (337)
|. +++..||+.|||+. ++++|+|||++++|.++| ..+...++.+.++++++|+.|.+|.+++|+|++ .|+|++|
T Consensus 161 p~--~~~~~l~t~ef~~~-~~~~L~~~Gv~v~~~~~~--~~~~~~~~~i~~tl~~~F~~v~~~~~~vP~~~~~~~~~~~~ 235 (246)
T PF01564_consen 161 PD--GPAPNLFTREFYQL-CKRRLKPDGVLVLQAGSP--FLHPELFKSILKTLRSVFPQVKPYTAYVPSYGSGWWSFASA 235 (246)
T ss_dssp TT--SCGGGGSSHHHHHH-HHHHEEEEEEEEEEEEET--TTTHHHHHHHHHHHHTTSSEEEEEEEECTTSCSSEEEEEEE
T ss_pred CC--CCcccccCHHHHHH-HHhhcCCCcEEEEEccCc--ccchHHHHHHHHHHHHhCCceEEEEEEcCeecccceeEEEE
Confidence 87 56667999999998 899999999999999776 567889999999999999999999999999976 4889999
Q ss_pred ecCC
Q 019699 265 SDSP 268 (337)
Q Consensus 265 s~~p 268 (337)
|+.+
T Consensus 236 s~~~ 239 (246)
T PF01564_consen 236 SKDI 239 (246)
T ss_dssp ESST
T ss_pred eCCC
Confidence 9986
No 8
>PRK03612 spermidine synthase; Provisional
Probab=100.00 E-value=1.1e-49 Score=403.61 Aligned_cols=289 Identities=30% Similarity=0.530 Sum_probs=249.7
Q ss_pred ceEEeeeccchhcccccccEEEEeecCCCeEEEEEeCC-Cc--eEEEEcCccccccCChhhHHHHHHhHHHhcCCCCCeE
Q 019699 30 CWYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKP-FG--KALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTI 106 (337)
Q Consensus 30 ~w~~e~~~~~~~~~~~~~~~l~~~~s~~q~I~V~~~~~-~G--~~L~lDG~~q~~~~de~~Y~e~l~~~~l~~~~~p~~V 106 (337)
.|..+.........++.++++++++|+||+|.|++++. +| +.|++||..|+++.|++.|||+++|++++.|++|++|
T Consensus 222 ~~~~~~~~~~~~~~~~~~~v~~~~~s~yq~i~v~~~~~~~~~~~~L~ldG~~q~s~~de~~y~e~l~~~~l~~~~~~~rV 301 (521)
T PRK03612 222 FVLADRIETTAEQLLYGDPVVYAEQTPYQRIVVTRRGNGRGPDLRLYLNGRLQFSSRDEYRYHEALVHPAMAASARPRRV 301 (521)
T ss_pred HHcccchhhHHHhHhccCeEEEEccCCCeEEEEEEecCCCCcceEEEECCEeeccCccHHHHHHHHHHHHHhhCCCCCeE
Confidence 35656555555667788999999999999999999876 36 8999999999999999999999999999999999999
Q ss_pred EEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhh--hh-hccCCCCCCCeEEEEccHHHHHhhcCCceeEEEEeC
Q 019699 107 FIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSY--LV-VNKEAFSDPRLELVINDARAELESRKESYDVIIGDL 183 (337)
Q Consensus 107 LiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~--f~-~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~D~ 183 (337)
|+||+|+|.+++++++|+++++|++||||+++++.||++ ++ .+.+.++|||++++++|+++|++..+++||+|++|.
T Consensus 302 L~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fDvIi~D~ 381 (521)
T PRK03612 302 LVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFDVIIVDL 381 (521)
T ss_pred EEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCCEEEEeC
Confidence 999999999999999987668999999999999999994 43 344567899999999999999988778999999999
Q ss_pred CCCCCCCC-CcCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhh-cCceeEEEeeccccCCceEE
Q 019699 184 ADPIEGGP-CYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV-FKYVVPYSAHIPSFADTWGW 261 (337)
Q Consensus 184 ~dp~~~~p-~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~v-F~~v~~~~~~vP~~~~~~~~ 261 (337)
++|. .| ..+++++|||+. ++++|+|||++++|.++| +.+.+.+.++.++++++ | .+.+|...+|+| +.|+|
T Consensus 382 ~~~~--~~~~~~L~t~ef~~~-~~~~L~pgG~lv~~~~~~--~~~~~~~~~i~~~l~~~gf-~v~~~~~~vps~-g~w~f 454 (521)
T PRK03612 382 PDPS--NPALGKLYSVEFYRL-LKRRLAPDGLLVVQSTSP--YFAPKAFWSIEATLEAAGL-ATTPYHVNVPSF-GEWGF 454 (521)
T ss_pred CCCC--CcchhccchHHHHHH-HHHhcCCCeEEEEecCCc--ccchHHHHHHHHHHHHcCC-EEEEEEeCCCCc-chhHH
Confidence 9876 33 258999999999 899999999999999877 56788899999999999 8 899999999999 48999
Q ss_pred EEEecCCCCCCHHHHHHHHHhccCCCceeeCHHHHHHhccCcHHHHHhhcCCCcccccCCccccccccccccc
Q 019699 262 IMASDSPFTLSAEELDMKVKKNIKGENRYLDGKTISSSSTLSKAVRKSLDNETQVYTEGSARFIYGYGSALKQ 334 (337)
Q Consensus 262 ~~as~~p~~~~~~~l~~r~~~~~~~~l~yy~~~~h~~~f~lP~~~~~~l~~~~~~~t~~~~~~~~~~~~~~~~ 334 (337)
++|||.+.+...+ . . ....++||||+++|+++|+||++++ .++.+|+|+++|.++.++-++.++
T Consensus 455 ~~as~~~~~~~~~--~---~-~~~~~~~~y~~~~h~~~f~lp~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 518 (521)
T PRK03612 455 VLAGAGARPPLAV--P---T-ELPVPLRFLDPALLAAAFVFPKDMR---RREVEPNTLNNPVLVRYYREEWRE 518 (521)
T ss_pred HeeeCCCCccccc--c---h-hcccCCcccCHHHHHHHhCCChhhh---hcCcCccccCCcceeHHHHHHHHH
Confidence 9999986543211 1 1 1245799999999999999999999 478999999999999987665443
No 9
>PRK01581 speE spermidine synthase; Validated
Probab=100.00 E-value=2.4e-47 Score=364.78 Aligned_cols=259 Identities=33% Similarity=0.525 Sum_probs=220.5
Q ss_pred eeecCCc-----ccccccccccccCCcccc---ceEEeeeccchhcccccccEEEEeecCCCeEEEEEeCCCceEEEEcC
Q 019699 5 SCSNGIS-----QANGADAKNVALTGYRKS---CWYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDG 76 (337)
Q Consensus 5 ~~~~~~~-----~~~~~~~~~~~~~~~~~~---~w~~e~~~~~~~~~~~~~~~l~~~~s~~q~I~V~~~~~~G~~L~lDG 76 (337)
+-+.||. |-|...++||.+-+-..+ .|- +.+ -..+-..+.++|++++|+||+|.|+++..+ .|+|||
T Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~vl~~~~S~yQ~I~I~et~~~--~L~LDG 124 (374)
T PRK01581 50 KQDRGIQYAETKQDNQVQSENVVIVPTDSHNLDIWD--EIS-LKEIQAGEHTNLFAEKSNYQNINLLQVSDI--RLYLDK 124 (374)
T ss_pred eeccCceeccCCccchhhccceEEeecCCCchhhhh--HHH-HHHHhhcccCEEEecCCCCceEEEEEcCCE--EEEECC
Confidence 4456664 456667788876544333 232 111 112223567999999999999999999976 699999
Q ss_pred ccccccCChhhHHHHHHhHHHhcCCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhh---hccCCC
Q 019699 77 KLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLV---VNKEAF 153 (337)
Q Consensus 77 ~~q~~~~de~~Y~e~l~~~~l~~~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~---~~~~~~ 153 (337)
.+|++++||++|||+|+|+|++.|++|++||+||||+|.+++++++++++.+|++||||++|+++|++++. .+++.+
T Consensus 125 ~~Q~se~DE~iYHE~Lvhp~m~~h~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~ 204 (374)
T PRK01581 125 QLQFSSVDEQIYHEALVHPIMSKVIDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAF 204 (374)
T ss_pred eeccccccHHHHHHHHHHHHHHhCCCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccC
Confidence 99999999999999999999999999999999999999999999999888999999999999999998543 345567
Q ss_pred CCCCeEEEEccHHHHHhhcCCceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHH
Q 019699 154 SDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSC 233 (337)
Q Consensus 154 ~d~rv~v~~~D~~~~l~~~~~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~ 233 (337)
++||++++++||++|++...++||+||+|+++|.. .+...||+.+||+. ++++|+|||++++|.++| +..+..+..
T Consensus 205 ~DpRV~vvi~Da~~fL~~~~~~YDVIIvDl~DP~~-~~~~~LyT~EFy~~-~~~~LkPgGV~V~Qs~sp--~~~~~~~~~ 280 (374)
T PRK01581 205 FDNRVNVHVCDAKEFLSSPSSLYDVIIIDFPDPAT-ELLSTLYTSELFAR-IATFLTEDGAFVCQSNSP--ADAPLVYWS 280 (374)
T ss_pred CCCceEEEECcHHHHHHhcCCCccEEEEcCCCccc-cchhhhhHHHHHHH-HHHhcCCCcEEEEecCCh--hhhHHHHHH
Confidence 89999999999999998888899999999998863 23578999999999 899999999999998877 556777888
Q ss_pred HHHHHhhhcCceeEEEeeccccCCceEEEEEecCCCCCC
Q 019699 234 IYNTLRQVFKYVVPYSAHIPSFADTWGWIMASDSPFTLS 272 (337)
Q Consensus 234 i~~~l~~vF~~v~~~~~~vP~~~~~~~~~~as~~p~~~~ 272 (337)
+.++++++|+.+.+|.+.+|+|++.|+|++||+.|..++
T Consensus 281 i~~tL~~af~~v~~y~t~vPsyg~~WgF~~as~~~~~~~ 319 (374)
T PRK01581 281 IGNTIEHAGLTVKSYHTIVPSFGTDWGFHIAANSAYVLD 319 (374)
T ss_pred HHHHHHHhCCceEEEEEecCCCCCceEEEEEeCCccccc
Confidence 999999999999999999999988899999999886654
No 10
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=7.2e-48 Score=352.86 Aligned_cols=282 Identities=28% Similarity=0.518 Sum_probs=251.4
Q ss_pred ccCCccccceEEeeec-----cchhcccccccEEEEeecCCCeEEEEEeCCCceEEEEcCccccccCChhhHHHHHHhHH
Q 019699 22 ALTGYRKSCWYEEEIE-----ENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPA 96 (337)
Q Consensus 22 ~~~~~~~~~w~~e~~~-----~~~~~~~~~~~~l~~~~s~~q~I~V~~~~~~G~~L~lDG~~q~~~~de~~Y~e~l~~~~ 96 (337)
+.-+....+||.|... |+.+++++++++|+.++|.||++.|+++..+|++|.+||..|.+++|++.|+||++|+|
T Consensus 36 s~h~~i~~GwF~e~~~~~~i~pg~a~tLkVe~vl~~ekS~~qdvlvf~s~tyg~vlvlDgviqlte~de~~Yqemi~~l~ 115 (337)
T KOG1562|consen 36 SSHPSIENGWFAEIHNKKDIWPGQALTLKVEKVLHDEKSDSQDVLVFESATYGKVLVLDGVIQLTERDEFAYQEMIAHLA 115 (337)
T ss_pred cccCcccCCeEeeecCCCCCCCCceeEEEeeeecccCchhHHHHHHHHHhhhheeeeeCCeeeCCccccccceeeeeccc
Confidence 4456677899998754 38899999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhc-CCc
Q 019699 97 LLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR-KES 175 (337)
Q Consensus 97 l~~~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~-~~~ 175 (337)
++.|++|++||+||+|+|+..|+..+|..++.++.+|||..|++..++|++.....+++|++.+++|||..|++.. .+.
T Consensus 116 l~s~~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~ 195 (337)
T KOG1562|consen 116 LCSHPNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENP 195 (337)
T ss_pred cccCCCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCC
Confidence 9999999999999999999999999999999999999999999999999997667799999999999999999987 689
Q ss_pred eeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhhcCceeEEEeecccc
Q 019699 176 YDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSF 255 (337)
Q Consensus 176 yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~vF~~v~~~~~~vP~~ 255 (337)
||+||+|+.+|. +|+..+|.+.||+. +++.|++||++++|..+- |.+.+..++..+..+.+|+.+..-.+.+|||
T Consensus 196 ~dVii~dssdpv--gpa~~lf~~~~~~~-v~~aLk~dgv~~~q~ec~--wl~~~~i~e~r~~~~~~f~~t~ya~ttvPTy 270 (337)
T KOG1562|consen 196 FDVIITDSSDPV--GPACALFQKPYFGL-VLDALKGDGVVCTQGECM--WLHLDYIKEGRSFCYVIFDLTAYAITTVPTY 270 (337)
T ss_pred ceEEEEecCCcc--chHHHHHHHHHHHH-HHHhhCCCcEEEEeccee--hHHHHHHHHHHHhHHHhcCccceeeecCCCC
Confidence 999999999998 89999999999998 899999999999998754 8899999999999999999876656789999
Q ss_pred C-CceEEEEEe-cCCC--------CCCHHHHHHHHHhccCCCceeeCHHHHHHhccCcHHHHHhhcC
Q 019699 256 A-DTWGWIMAS-DSPF--------TLSAEELDMKVKKNIKGENRYLDGKTISSSSTLSKAVRKSLDN 312 (337)
Q Consensus 256 ~-~~~~~~~as-~~p~--------~~~~~~l~~r~~~~~~~~l~yy~~~~h~~~f~lP~~~~~~l~~ 312 (337)
+ +..+|++|| ++|. +++..+. .++. ..+|+|||.++|+++|+||.|+++.+..
T Consensus 271 psg~igf~l~s~~~~~~~~~~p~n~i~~~e~-~~l~---~~~L~yyn~e~h~aaf~lPsf~~k~~~~ 333 (337)
T KOG1562|consen 271 PSGRIGFMLCSKLKPDGKYKTPGNPITCKEQ-LSLY---EEQLLYYNVEFHSAAFVLPSFAEKWLFY 333 (337)
T ss_pred ccceEEEEEecccCCCCCccCCCCccCHHHH-Hhhh---hhhhccCCchhceeeeechHHHHHHHHH
Confidence 5 678999999 3431 2322221 2222 2478999999999999999999998753
No 11
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=100.00 E-value=2e-45 Score=344.25 Aligned_cols=272 Identities=29% Similarity=0.513 Sum_probs=239.7
Q ss_pred chhcccccccEEEEeecCCCeEEEEEeCCCceEEEEcCccccccCChhhHHHHHHhHHHhcCCCCCeEEEEecchhHHHH
Q 019699 39 NLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAR 118 (337)
Q Consensus 39 ~~~~~~~~~~~l~~~~s~~q~I~V~~~~~~G~~L~lDG~~q~~~~de~~Y~e~l~~~~l~~~~~p~~VLiIG~G~G~~~~ 118 (337)
..++.+..++++|..+|+||+|.|.+.++ ...|++||..|.+++||+.|||.++|+++...+..++||++|||+|-.+|
T Consensus 227 ~~eqqlygdeIIh~~qspYQ~iVvTr~g~-d~rLYldG~LQfsTrDe~RYhEsLV~pals~~~~a~~vLvlGGGDGLAlR 305 (508)
T COG4262 227 TSEQQLYGDEIIHAIQSPYQRIVVTRRGD-DLRLYLDGGLQFSTRDEYRYHESLVYPALSSVRGARSVLVLGGGDGLALR 305 (508)
T ss_pred hHHHHhhcCceeeeccCccceEEEEEecC-ceEEEEcCceeeeechhhhhhheeeecccccccccceEEEEcCCchHHHH
Confidence 34456667899999999999999999876 37899999999999999999999999999888899999999999999999
Q ss_pred HHHhcCCCcEEEEEECChHHHHHHHhhh---hhccCCCCCCCeEEEEccHHHHHhhcCCceeEEEEeCCCCCCCCCCcCC
Q 019699 119 EILRHKTVEKVVMCDIDEEVVEFCKSYL---VVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKL 195 (337)
Q Consensus 119 ~ll~~~~~~~v~~VEid~~vi~~a~~~f---~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~D~~dp~~~~p~~~L 195 (337)
|++|++..++|+.||+||+|++.+++.. ..+++++.|||++++++|+.+|++...+.||+||+|.+||.... ...+
T Consensus 306 ellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~vIVDl~DP~tps-~~rl 384 (508)
T COG4262 306 ELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFDVVIVDLPDPSTPS-IGRL 384 (508)
T ss_pred HHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccccEEEEeCCCCCCcc-hhhh
Confidence 9999988999999999999999999654 35778899999999999999999999999999999999998432 3589
Q ss_pred chHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhhcCceeEEEeeccccCCceEEEEEecCCCCCCHHH
Q 019699 196 YTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSFADTWGWIMASDSPFTLSAEE 275 (337)
Q Consensus 196 ~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~vF~~v~~~~~~vP~~~~~~~~~~as~~p~~~~~~~ 275 (337)
|+.|||.. ++++|+++|++++|.++| +..++.+.++.+|+++.--.+.||.+++|+|++ |+|++|++.+..+.+
T Consensus 385 YS~eFY~l-l~~~l~e~Gl~VvQags~--y~tp~vfw~i~aTik~AG~~~~Pyhv~VPTFGe-WGf~l~~~~~~~fep-- 458 (508)
T COG4262 385 YSVEFYRL-LSRHLAETGLMVVQAGSP--YFTPRVFWRIDATIKSAGYRVWPYHVHVPTFGE-WGFILAAPGDADFEP-- 458 (508)
T ss_pred hhHHHHHH-HHHhcCcCceEEEecCCC--ccCCceeeeehhHHHhCcceeeeeEEecCcccc-cceeecccccCCCCC--
Confidence 99999998 899999999999999998 678999999999999998889999999999976 999999998754421
Q ss_pred HHHHHHhccCCCceeeCHHHHHHhccCcHHHHHhhc-CCCcccccCCcccccc
Q 019699 276 LDMKVKKNIKGENRYLDGKTISSSSTLSKAVRKSLD-NETQVYTEGSARFIYG 327 (337)
Q Consensus 276 l~~r~~~~~~~~l~yy~~~~h~~~f~lP~~~~~~l~-~~~~~~t~~~~~~~~~ 327 (337)
.. ....+++|.|.++..++|++.+. .. .+..++|.|||..+.+
T Consensus 459 ~~-----e~~~~t~FLd~e~~~a~~~fg~d----~prp~vepntL~~p~lV~y 502 (508)
T COG4262 459 PT-----EYRPPTRFLDAEVLHAAFVFGPD----MPRPQVEPNTLDNPSLVEY 502 (508)
T ss_pred Cc-----ccCcccchhhHHHHHHHHhcCCC----CCCCCCCccccCCHHHHHH
Confidence 00 12468999999999999988765 23 3678999999988764
No 12
>PRK04457 spermidine synthase; Provisional
Probab=99.97 E-value=1.6e-28 Score=229.15 Aligned_cols=215 Identities=21% Similarity=0.333 Sum_probs=172.0
Q ss_pred EEeecCCCeEEEEEeCCCceEEEEcC-cccccc------CChhhHHHHHHhHHHhcCCCCCeEEEEecchhHHHHHHHhc
Q 019699 51 HTGETRYQDIALLDTKPFGKALVIDG-KLQSAE------VDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRH 123 (337)
Q Consensus 51 ~~~~s~~q~I~V~~~~~~G~~L~lDG-~~q~~~------~de~~Y~e~l~~~~l~~~~~p~~VLiIG~G~G~~~~~ll~~ 123 (337)
...++.|+.|.|+|... .|+|.+|+ ..|+.. ...+.|+++|+ ..+..+++|++||+||+|+|.++++++++
T Consensus 10 ~~~~~~~~~i~v~e~~~-~R~L~f~~~~~qs~~~~~~P~~l~~~y~~~m~-~~l~~~~~~~~vL~IG~G~G~l~~~l~~~ 87 (262)
T PRK04457 10 RPAKAGFPEVGVSEEGG-VRSLHLGSDTVQSSMRIDDPSELELAYTRAMM-GFLLFNPRPQHILQIGLGGGSLAKFIYTY 87 (262)
T ss_pred ccccccCCCcEEEecCC-EEEEEECCCcceeeeecCCcccccCHHHHHHH-HHHhcCCCCCEEEEECCCHhHHHHHHHHh
Confidence 34567899999999987 49999998 477753 23468999886 35556788999999999999999999998
Q ss_pred CCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEEEeCCCCCCCCCCcCCchHHHHHH
Q 019699 124 KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEF 203 (337)
Q Consensus 124 ~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~ 203 (337)
.+..+|++||+||+++++|+++|..+. .++|++++++|+++|++...++||+|++|.++.. +++..+++.+||+.
T Consensus 88 ~p~~~v~~VEidp~vi~~A~~~f~~~~---~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~~~~~--~~~~~l~t~efl~~ 162 (262)
T PRK04457 88 LPDTRQTAVEINPQVIAVARNHFELPE---NGERFEVIEADGAEYIAVHRHSTDVILVDGFDGE--GIIDALCTQPFFDD 162 (262)
T ss_pred CCCCeEEEEECCHHHHHHHHHHcCCCC---CCCceEEEECCHHHHHHhCCCCCCEEEEeCCCCC--CCccccCcHHHHHH
Confidence 888899999999999999999987542 3689999999999999887789999999998654 44468899999999
Q ss_pred HhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhhcCceeEEEeeccccCCceEEEEEec-CCCCCCHHHHHHHHH
Q 019699 204 VVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSFADTWGWIMASD-SPFTLSAEELDMKVK 281 (337)
Q Consensus 204 ~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~vF~~v~~~~~~vP~~~~~~~~~~as~-~p~~~~~~~l~~r~~ 281 (337)
++++|+|||++++|. +...+.+..++++++++|+++.. . +|.....|.+++|++ .|...+...+.+|.+
T Consensus 163 -~~~~L~pgGvlvin~-----~~~~~~~~~~l~~l~~~F~~~~~-~--~~~~~~~N~v~~a~~~~~~~~~~~~l~~~a~ 232 (262)
T PRK04457 163 -CRNALSSDGIFVVNL-----WSRDKRYDRYLERLESSFEGRVL-E--LPAESHGNVAVFAFKSAPKELRWDKLRKRAK 232 (262)
T ss_pred -HHHhcCCCcEEEEEc-----CCCchhHHHHHHHHHHhcCCcEE-E--EecCCCccEEEEEECCCCCCcCHHHHHHHHH
Confidence 899999999999986 23344567888999999996432 2 233344577888987 464555577777755
No 13
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=99.70 E-value=2.6e-16 Score=141.07 Aligned_cols=170 Identities=22% Similarity=0.289 Sum_probs=140.9
Q ss_pred eEEEEcCccccccCChhhHHHHHHhHHHhcCCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhc
Q 019699 70 KALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVN 149 (337)
Q Consensus 70 ~~L~lDG~~q~~~~de~~Y~e~l~~~~l~~~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~ 149 (337)
-++.+||..|.......++..++..+.+.-..+..+||+.++|-|.++.+.++. +..+|..||-||.|+++|+-+ |+.
T Consensus 102 PTiEIdGIrMhrt~~tdP~~Dt~~Kv~~V~~~~G~rVLDtC~GLGYtAi~a~~r-GA~~VitvEkdp~VLeLa~lN-PwS 179 (287)
T COG2521 102 PTIEIDGIRMHRTKGTDPLEDTLAKVELVKVKRGERVLDTCTGLGYTAIEALER-GAIHVITVEKDPNVLELAKLN-PWS 179 (287)
T ss_pred CeEEEccEEEecccCcCcHHHHHhhhheeccccCCEeeeeccCccHHHHHHHHc-CCcEEEEEeeCCCeEEeeccC-CCC
Confidence 578999999987777778899988877766667899999999999999999996 456999999999999999876 443
Q ss_pred cCCCCCCCeEEEEccHHHHHhhcC-CceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCCCCc-CCC
Q 019699 150 KEAFSDPRLELVINDARAELESRK-ESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGI-FSH 227 (337)
Q Consensus 150 ~~~~~d~rv~v~~~D~~~~l~~~~-~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~-~~~ 227 (337)
.+ +.+++++++.+|+.+++++.+ ++||+||.|++--. .+.+||+.+||++ +.+.|++||-+.-..+.|+. ...
T Consensus 180 r~-l~~~~i~iilGD~~e~V~~~~D~sfDaIiHDPPRfS---~AgeLYseefY~E-l~RiLkrgGrlFHYvG~Pg~ryrG 254 (287)
T COG2521 180 RE-LFEIAIKIILGDAYEVVKDFDDESFDAIIHDPPRFS---LAGELYSEEFYRE-LYRILKRGGRLFHYVGNPGKRYRG 254 (287)
T ss_pred cc-ccccccEEecccHHHHHhcCCccccceEeeCCCccc---hhhhHhHHHHHHH-HHHHcCcCCcEEEEeCCCCccccc
Confidence 33 345689999999999999865 66999999997432 2358999999999 89999999999888887763 334
Q ss_pred hhHHHHHHHHHhhh-cCcee
Q 019699 228 TEVFSCIYNTLRQV-FKYVV 246 (337)
Q Consensus 228 ~~~~~~i~~~l~~v-F~~v~ 246 (337)
.+..+.+.+.|+++ |..|.
T Consensus 255 ~d~~~gVa~RLr~vGF~~v~ 274 (287)
T COG2521 255 LDLPKGVAERLRRVGFEVVK 274 (287)
T ss_pred CChhHHHHHHHHhcCceeee
Confidence 56778899999998 65443
No 14
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.54 E-value=1.9e-14 Score=115.96 Aligned_cols=109 Identities=20% Similarity=0.197 Sum_probs=85.8
Q ss_pred CCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEEEe
Q 019699 103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGD 182 (337)
Q Consensus 103 p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~D 182 (337)
..+||+||||+|.++.+++++.+..+|++||+||++++.|++.+.... ..+|++++.+|+ .+.....++||+|+++
T Consensus 2 ~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~---~~~~i~~~~~d~-~~~~~~~~~~D~v~~~ 77 (112)
T PF12847_consen 2 GGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEG---LSDRITFVQGDA-EFDPDFLEPFDLVICS 77 (112)
T ss_dssp TCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTT---TTTTEEEEESCC-HGGTTTSSCEEEEEEC
T ss_pred CCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcC---CCCCeEEEECcc-ccCcccCCCCCEEEEC
Confidence 578999999999999999996567899999999999999999984322 358999999999 5555556789999998
Q ss_pred C-CCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699 183 L-ADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (337)
Q Consensus 183 ~-~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~ 219 (337)
. .... .+ ..-...++++. ++++|+|||+++++.
T Consensus 78 ~~~~~~--~~-~~~~~~~~l~~-~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 78 GFTLHF--LL-PLDERRRVLER-IRRLLKPGGRLVINT 111 (112)
T ss_dssp SGSGGG--CC-HHHHHHHHHHH-HHHHEEEEEEEEEEE
T ss_pred CCcccc--cc-chhHHHHHHHH-HHHhcCCCcEEEEEE
Confidence 7 3211 11 01123568898 899999999999863
No 15
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=99.47 E-value=8e-14 Score=137.12 Aligned_cols=170 Identities=18% Similarity=0.219 Sum_probs=136.6
Q ss_pred hHHHHHHh-HHHhc------CCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeE
Q 019699 87 IYHESLVH-PALLH------HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLE 159 (337)
Q Consensus 87 ~Y~e~l~~-~~l~~------~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~ 159 (337)
.||.+|.. .+|.. +....++|++|.|+|.++..+..+.+..++++|||||.+++.|++||...+ +.|.+
T Consensus 273 ~~h~~m~~g~aL~~n~~~~~~~~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q----~~r~~ 348 (482)
T KOG2352|consen 273 QYHQMMIGGLALIMNRPPQKLDTGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQ----SDRNK 348 (482)
T ss_pred chhhhhhccceeccccCchhccccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhh----hhhhh
Confidence 58887753 23332 234678999999999999999988888999999999999999999998764 34899
Q ss_pred EEEccHHHHHhhc------CCceeEEEEeCCCCCC---CCCCcCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhH
Q 019699 160 LVINDARAELESR------KESYDVIIGDLADPIE---GGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEV 230 (337)
Q Consensus 160 v~~~D~~~~l~~~------~~~yDvIi~D~~dp~~---~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~ 230 (337)
+++.||.+|++++ ...||+++.|...+.. ..|+..+...+|++. ++..|.|.|++++|..++ +...
T Consensus 349 V~i~dGl~~~~~~~k~~~~~~~~dvl~~dvds~d~~g~~~pp~~fva~~~l~~-~k~~l~p~g~f~inlv~r----~~~~ 423 (482)
T KOG2352|consen 349 VHIADGLDFLQRTAKSQQEDICPDVLMVDVDSKDSHGMQCPPPAFVAQVALQP-VKMILPPRGMFIINLVTR----NSSF 423 (482)
T ss_pred hhHhhchHHHHHHhhccccccCCcEEEEECCCCCcccCcCCchHHHHHHHHHH-HhhccCccceEEEEEecC----Ccch
Confidence 9999999999875 3579999999864332 235567888999999 899999999999997543 5566
Q ss_pred HHHHHHHHhhhcCceeEEEeeccccCCceEEEEEecCCC
Q 019699 231 FSCIYNTLRQVFKYVVPYSAHIPSFADTWGWIMASDSPF 269 (337)
Q Consensus 231 ~~~i~~~l~~vF~~v~~~~~~vP~~~~~~~~~~as~~p~ 269 (337)
..++...|+++||....+... ++.|-+++|...|.
T Consensus 424 ~~~~~~~l~~vf~~l~~~~~~----~~~N~il~~~~~~~ 458 (482)
T KOG2352|consen 424 KDEVLMNLAKVFPQLYHHQLE----EDVNEILIGQMPPK 458 (482)
T ss_pred hHHHHHhhhhhhHHHhhhhcc----CCCceeEEeecChh
Confidence 778899999999997655432 46788899987764
No 16
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.45 E-value=6.1e-13 Score=108.10 Aligned_cols=110 Identities=26% Similarity=0.369 Sum_probs=85.3
Q ss_pred CeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhh-cCCceeEEEEe
Q 019699 104 KTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDVIIGD 182 (337)
Q Consensus 104 ~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~-~~~~yDvIi~D 182 (337)
.+||++|+|+|.++..++++. ..+++++|+||..++++++.++... -+++++++.+|..++.+. ..++||+|+.|
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~n 77 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRNG---LDDRVEVIVGDARDLPEPLPDGKFDLIVTN 77 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHCT---TTTTEEEEESHHHHHHHTCTTT-EEEEEE-
T ss_pred CEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHcc---CCceEEEEECchhhchhhccCceeEEEEEC
Confidence 589999999999999999986 6899999999999999999987643 246899999999998743 35889999999
Q ss_pred CCCCCCC-C-CCcCCchHHHHHHHhccccCCCceEEEe
Q 019699 183 LADPIEG-G-PCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (337)
Q Consensus 183 ~~dp~~~-~-p~~~L~t~ef~~~~~~~~L~p~Gvlv~~ 218 (337)
++..... . ....-...+|++. +.++|+|||++++-
T Consensus 78 pP~~~~~~~~~~~~~~~~~~~~~-~~~~L~~gG~~~~~ 114 (117)
T PF13659_consen 78 PPYGPRSGDKAALRRLYSRFLEA-AARLLKPGGVLVFI 114 (117)
T ss_dssp -STTSBTT----GGCHHHHHHHH-HHHHEEEEEEEEEE
T ss_pred CCCccccccchhhHHHHHHHHHH-HHHHcCCCeEEEEE
Confidence 9743210 0 1111234689998 89999999998875
No 17
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.38 E-value=1.4e-12 Score=113.99 Aligned_cols=129 Identities=19% Similarity=0.263 Sum_probs=93.2
Q ss_pred CCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEEE
Q 019699 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG 181 (337)
Q Consensus 102 ~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~ 181 (337)
..++||++|||+|.++..++++.+..+|+++|+++..++.+++++..+. ++ .++++..|..+.+. .++||+|++
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~--~~--~v~~~~~d~~~~~~--~~~fD~Iv~ 104 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNG--LE--NVEVVQSDLFEALP--DGKFDLIVS 104 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTT--CT--TEEEEESSTTTTCC--TTCEEEEEE
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcC--cc--cccccccccccccc--ccceeEEEE
Confidence 6789999999999999999998877789999999999999999988653 22 29999999877665 578999999
Q ss_pred eCCCCCCCCCC-cCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhhcCceeEE
Q 019699 182 DLADPIEGGPC-YKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPY 248 (337)
Q Consensus 182 D~~dp~~~~p~-~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~vF~~v~~~ 248 (337)
++|-.. +.. ......+|++. ++++|+|||.+.+-.... .. .+ +.+++.|..+...
T Consensus 105 NPP~~~--~~~~~~~~~~~~i~~-a~~~Lk~~G~l~lv~~~~---~~---~~---~~l~~~f~~~~~~ 160 (170)
T PF05175_consen 105 NPPFHA--GGDDGLDLLRDFIEQ-ARRYLKPGGRLFLVINSH---LG---YE---RLLKELFGDVEVV 160 (170)
T ss_dssp ---SBT--TSHCHHHHHHHHHHH-HHHHEEEEEEEEEEEETT---SC---HH---HHHHHHHS--EEE
T ss_pred ccchhc--ccccchhhHHHHHHH-HHHhccCCCEEEEEeecC---CC---hH---HHHHHhcCCEEEE
Confidence 987332 221 11234788998 799999999875433211 11 11 2378888876653
No 18
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.38 E-value=2.6e-11 Score=111.45 Aligned_cols=140 Identities=19% Similarity=0.273 Sum_probs=106.9
Q ss_pred HHHhHHHhcCCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHh
Q 019699 91 SLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELE 170 (337)
Q Consensus 91 ~l~~~~l~~~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~ 170 (337)
.+........+..++|||||+|.|.++..++++.+..+|++|||++++.+.|++....+. -.+|++++.+|.-+|.+
T Consensus 33 aiLL~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~---l~~ri~v~~~Di~~~~~ 109 (248)
T COG4123 33 AILLAAFAPVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNP---LEERIQVIEADIKEFLK 109 (248)
T ss_pred HHHHHhhcccccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCc---chhceeEehhhHHHhhh
Confidence 333334444455899999999999999999998666899999999999999999987653 25799999999999987
Q ss_pred hcC-CceeEEEEeCCCCC-CCC--CC---------cCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHH
Q 019699 171 SRK-ESYDVIIGDLADPI-EGG--PC---------YKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNT 237 (337)
Q Consensus 171 ~~~-~~yDvIi~D~~dp~-~~~--p~---------~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~ 237 (337)
... .+||+|+++++.-. ... +. ..+.-.++.+. ++++|+|+|.+++- ..++.+.++...
T Consensus 110 ~~~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~-a~~~lk~~G~l~~V-------~r~erl~ei~~~ 181 (248)
T COG4123 110 ALVFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRA-AAKLLKPGGRLAFV-------HRPERLAEIIEL 181 (248)
T ss_pred cccccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHH-HHHHccCCCEEEEE-------ecHHHHHHHHHH
Confidence 755 45999999997211 011 10 02333678887 89999999998864 245677788899
Q ss_pred Hhhh
Q 019699 238 LRQV 241 (337)
Q Consensus 238 l~~v 241 (337)
+++.
T Consensus 182 l~~~ 185 (248)
T COG4123 182 LKSY 185 (248)
T ss_pred HHhc
Confidence 9984
No 19
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=99.37 E-value=8.6e-12 Score=112.87 Aligned_cols=106 Identities=25% Similarity=0.340 Sum_probs=89.3
Q ss_pred CCCCCeEEEEecchhHHHHHHHhcCC-CcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEE-ccHHHHHhh-cCCce
Q 019699 100 HPNPKTIFIMGGGEGSTAREILRHKT-VEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI-NDARAELES-RKESY 176 (337)
Q Consensus 100 ~~~p~~VLiIG~G~G~~~~~ll~~~~-~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~-~D~~~~l~~-~~~~y 176 (337)
...+++||+||.+.|..+.+++..-+ ..+++.+|+|++.++.|+++|.... -+++++++. +|+.+.+.+ ..+.|
T Consensus 57 ~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag---~~~~i~~~~~gdal~~l~~~~~~~f 133 (219)
T COG4122 57 LSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAG---VDDRIELLLGGDALDVLSRLLDGSF 133 (219)
T ss_pred hcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcC---CcceEEEEecCcHHHHHHhccCCCc
Confidence 35899999999999999999988644 7799999999999999999997543 256799999 699999986 56899
Q ss_pred eEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699 177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (337)
Q Consensus 177 DvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~ 218 (337)
|+||+|+.-+. ..+||+. +-++|+|||++++.
T Consensus 134 DliFIDadK~~---------yp~~le~-~~~lLr~GGliv~D 165 (219)
T COG4122 134 DLVFIDADKAD---------YPEYLER-ALPLLRPGGLIVAD 165 (219)
T ss_pred cEEEEeCChhh---------CHHHHHH-HHHHhCCCcEEEEe
Confidence 99999985322 2589998 78999999999874
No 20
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.37 E-value=2.4e-11 Score=108.02 Aligned_cols=157 Identities=15% Similarity=0.232 Sum_probs=105.3
Q ss_pred hHHHHHHhHHHh--cCCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEcc
Q 019699 87 IYHESLVHPALL--HHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVIND 164 (337)
Q Consensus 87 ~Y~e~l~~~~l~--~~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D 164 (337)
.+++.++....+ ..+++.+||+||||+|..+..+++..+..+|++||+++.+++.|++...... + ++++++.+|
T Consensus 28 ~~~~~~~d~l~l~~~l~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~--l--~~i~~~~~d 103 (187)
T PRK00107 28 LWERHILDSLAIAPYLPGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELG--L--KNVTVVHGR 103 (187)
T ss_pred HHHHHHHHHHHHHhhcCCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcC--C--CCEEEEecc
Confidence 455555432222 1245789999999999999998876667899999999999999999876542 2 349999999
Q ss_pred HHHHHhhcCCceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhhcCc
Q 019699 165 ARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKY 244 (337)
Q Consensus 165 ~~~~l~~~~~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~vF~~ 244 (337)
+.++-. .++||+|+++... . -.+|++. +.+.|+|||.+++..+.. ....+.++...+. -.-
T Consensus 104 ~~~~~~--~~~fDlV~~~~~~----~------~~~~l~~-~~~~LkpGG~lv~~~~~~----~~~~l~~~~~~~~--~~~ 164 (187)
T PRK00107 104 AEEFGQ--EEKFDVVTSRAVA----S------LSDLVEL-CLPLLKPGGRFLALKGRD----PEEEIAELPKALG--GKV 164 (187)
T ss_pred HhhCCC--CCCccEEEEcccc----C------HHHHHHH-HHHhcCCCeEEEEEeCCC----hHHHHHHHHHhcC--ceE
Confidence 987533 5789999997531 1 1468887 799999999998875421 2222332222221 111
Q ss_pred eeEEEeeccccCCceEEEEEec
Q 019699 245 VVPYSAHIPSFADTWGWIMASD 266 (337)
Q Consensus 245 v~~~~~~vP~~~~~~~~~~as~ 266 (337)
...|...+|...+.--|++-.|
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~ 186 (187)
T PRK00107 165 EEVIELTLPGLDGERHLVIIRK 186 (187)
T ss_pred eeeEEEecCCCCCcEEEEEEec
Confidence 2334556777755555555544
No 21
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=99.36 E-value=5.5e-12 Score=113.63 Aligned_cols=105 Identities=22% Similarity=0.339 Sum_probs=85.2
Q ss_pred CCCCeEEEEecchhHHHHHHHhc-CCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhc-----CC
Q 019699 101 PNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR-----KE 174 (337)
Q Consensus 101 ~~p~~VLiIG~G~G~~~~~ll~~-~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~-----~~ 174 (337)
.+|++||+||++.|..+..+++. ++..+|+.+|+|++..+.|+++|.... + +.|++++.+|+.+++.+. .+
T Consensus 44 ~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag--~-~~~I~~~~gda~~~l~~l~~~~~~~ 120 (205)
T PF01596_consen 44 TRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAG--L-DDRIEVIEGDALEVLPELANDGEEG 120 (205)
T ss_dssp HT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTT--G-GGGEEEEES-HHHHHHHHHHTTTTT
T ss_pred cCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcC--C-CCcEEEEEeccHhhHHHHHhccCCC
Confidence 58899999999999999999975 456899999999999999999997532 2 469999999999988752 25
Q ss_pred ceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699 175 SYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (337)
Q Consensus 175 ~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~ 218 (337)
+||+||+|+.-. - -.++|.. +.++|++||++++.
T Consensus 121 ~fD~VFiDa~K~--------~-y~~y~~~-~~~ll~~ggvii~D 154 (205)
T PF01596_consen 121 QFDFVFIDADKR--------N-YLEYFEK-ALPLLRPGGVIIAD 154 (205)
T ss_dssp SEEEEEEESTGG--------G-HHHHHHH-HHHHEEEEEEEEEE
T ss_pred ceeEEEEccccc--------c-hhhHHHH-HhhhccCCeEEEEc
Confidence 799999998521 1 2468887 67899999999885
No 22
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.34 E-value=3.4e-11 Score=108.25 Aligned_cols=129 Identities=17% Similarity=0.163 Sum_probs=97.1
Q ss_pred CCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhh--cCCceeEE
Q 019699 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES--RKESYDVI 179 (337)
Q Consensus 102 ~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~--~~~~yDvI 179 (337)
+..+||+||||+|..+..+++..+..+|++||+++.+++.|++.+.... -++++++.+|+.+.+.. .+++||+|
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~----~~~v~~~~~d~~~~l~~~~~~~~~D~V 115 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEG----LTNLRLLCGDAVEVLLDMFPDGSLDRI 115 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcC----CCCEEEEecCHHHHHHHHcCccccceE
Confidence 5689999999999999999887666789999999999999999875432 26799999999444442 35789999
Q ss_pred EEeCCCCCCCCCC--cCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhh
Q 019699 180 IGDLADPIEGGPC--YKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV 241 (337)
Q Consensus 180 i~D~~dp~~~~p~--~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~v 241 (337)
++..++|+...+. ..+....|++. +.++|+|||++++... ....+..+.+.+++.
T Consensus 116 ~~~~~~p~~~~~~~~~~~~~~~~l~~-i~~~LkpgG~l~i~~~------~~~~~~~~~~~~~~~ 172 (202)
T PRK00121 116 YLNFPDPWPKKRHHKRRLVQPEFLAL-YARKLKPGGEIHFATD------WEGYAEYMLEVLSAE 172 (202)
T ss_pred EEECCCCCCCccccccccCCHHHHHH-HHHHcCCCCEEEEEcC------CHHHHHHHHHHHHhC
Confidence 9987766521111 11234789998 8999999999988642 345566666666653
No 23
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.34 E-value=3e-11 Score=107.77 Aligned_cols=130 Identities=13% Similarity=0.162 Sum_probs=99.5
Q ss_pred CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhc--CCceeE
Q 019699 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR--KESYDV 178 (337)
Q Consensus 101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~--~~~yDv 178 (337)
....++|+||||+|.++..+++..+..++++||+++++++.|++...... -++++++.+|+.+++... .+.+|.
T Consensus 15 ~~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~----l~ni~~i~~d~~~~~~~~~~~~~~d~ 90 (194)
T TIGR00091 15 NKAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLG----LKNLHVLCGDANELLDKFFPDGSLSK 90 (194)
T ss_pred CCCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhC----CCCEEEEccCHHHHHHhhCCCCceeE
Confidence 34568999999999999999987777899999999999999998765431 248999999998876442 358999
Q ss_pred EEEeCCCCCCCCCC--cCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhh
Q 019699 179 IIGDLADPIEGGPC--YKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV 241 (337)
Q Consensus 179 Ii~D~~dp~~~~p~--~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~v 241 (337)
|+++.++|+..... ..+...+|++. +.+.|+|||.+.+.+. ....+..+...+.+.
T Consensus 91 v~~~~pdpw~k~~h~~~r~~~~~~l~~-~~r~LkpgG~l~~~td------~~~~~~~~~~~~~~~ 148 (194)
T TIGR00091 91 VFLNFPDPWPKKRHNKRRITQPHFLKE-YANVLKKGGVIHFKTD------NEPLFEDMLKVLSEN 148 (194)
T ss_pred EEEECCCcCCCCCccccccCCHHHHHH-HHHHhCCCCEEEEEeC------CHHHHHHHHHHHHhC
Confidence 99999988732110 23555789998 8999999999988753 334455555565554
No 24
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.33 E-value=2.9e-11 Score=111.22 Aligned_cols=104 Identities=21% Similarity=0.269 Sum_probs=85.3
Q ss_pred CCCCeEEEEecchhHHHHHHHhc-CCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhc-----CC
Q 019699 101 PNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR-----KE 174 (337)
Q Consensus 101 ~~p~~VLiIG~G~G~~~~~ll~~-~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~-----~~ 174 (337)
..+++||+||+|+|..+..+++. ++..+|+++|+|++.++.|++++.... + +.+++++.+|+.+.+.+. .+
T Consensus 67 ~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~g--l-~~~i~~~~gda~~~L~~l~~~~~~~ 143 (234)
T PLN02781 67 MNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAG--V-DHKINFIQSDALSALDQLLNNDPKP 143 (234)
T ss_pred hCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC--C-CCcEEEEEccHHHHHHHHHhCCCCC
Confidence 56899999999999988888775 456799999999999999999987543 2 368999999999988652 36
Q ss_pred ceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEE
Q 019699 175 SYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT 217 (337)
Q Consensus 175 ~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~ 217 (337)
+||+|++|...+. | .++|+. +.+.|+|||++++
T Consensus 144 ~fD~VfiDa~k~~--------y-~~~~~~-~~~ll~~GG~ii~ 176 (234)
T PLN02781 144 EFDFAFVDADKPN--------Y-VHFHEQ-LLKLVKVGGIIAF 176 (234)
T ss_pred CCCEEEECCCHHH--------H-HHHHHH-HHHhcCCCeEEEE
Confidence 8999999975321 1 267887 7899999999886
No 25
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.30 E-value=1.9e-10 Score=113.17 Aligned_cols=191 Identities=16% Similarity=0.190 Sum_probs=119.2
Q ss_pred cCCCeEEEEEeCCCceEEEEcCccccccCChhhHHHHHHhHHHhcCCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEEC
Q 019699 55 TRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDI 134 (337)
Q Consensus 55 s~~q~I~V~~~~~~G~~L~lDG~~q~~~~de~~Y~e~l~~~~l~~~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEi 134 (337)
-|.|+|.=.... +|.-+.++-......++ +|.++...+...++..+|||||||+|.++..+++..+..+|+++|+
T Consensus 209 ePlqYIlG~~~F-~G~~f~V~p~vLIPRpe----TE~LVe~aL~~l~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDi 283 (423)
T PRK14966 209 EPVAYILGVREF-YGRRFAVNPNVLIPRPE----TEHLVEAVLARLPENGRVWDLGTGSGAVAVTVALERPDAFVRASDI 283 (423)
T ss_pred CCceeEeeeeee-cCcEEEeCCCccCCCcc----HHHHHHHhhhccCCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEEC
Confidence 467777665443 47777777655554444 3444332222223456999999999999999887766789999999
Q ss_pred ChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEEEeCCC-CCCC----------CCCcCCc----hHH
Q 019699 135 DEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLAD-PIEG----------GPCYKLY----TKS 199 (337)
Q Consensus 135 d~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~D~~d-p~~~----------~p~~~L~----t~e 199 (337)
|+++++.|+++.... ..+++++.+|..+......++||+|++|++. +... .|...|+ ..+
T Consensus 284 S~~ALe~AreNa~~~-----g~rV~fi~gDl~e~~l~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~ 358 (423)
T PRK14966 284 SPPALETARKNAADL-----GARVEFAHGSWFDTDMPSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLS 358 (423)
T ss_pred CHHHHHHHHHHHHHc-----CCcEEEEEcchhccccccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHH
Confidence 999999999987643 2379999999865422123579999999973 1100 1111122 123
Q ss_pred HHHHH---hccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhh-cCceeEEEeeccccCCceEEEEEec
Q 019699 200 FYEFV---VKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV-FKYVVPYSAHIPSFADTWGWIMASD 266 (337)
Q Consensus 200 f~~~~---~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~v-F~~v~~~~~~vP~~~~~~~~~~as~ 266 (337)
||+.+ +.++|+|||.+++..+. .+.+ .+.+.+++. |..+..+ ..+.+...++++.+
T Consensus 359 ~yr~Ii~~a~~~LkpgG~lilEiG~----~Q~e---~V~~ll~~~Gf~~v~v~----kDl~G~dR~v~~~~ 418 (423)
T PRK14966 359 CIRTLAQGAPDRLAEGGFLLLEHGF----DQGA---AVRGVLAENGFSGVETL----PDLAGLDRVTLGKY 418 (423)
T ss_pred HHHHHHHHHHHhcCCCcEEEEEECc----cHHH---HHHHHHHHCCCcEEEEE----EcCCCCcEEEEEEE
Confidence 44441 46899999999887642 2333 334444432 5544332 33444455666654
No 26
>PLN02476 O-methyltransferase
Probab=99.30 E-value=7.4e-11 Score=110.67 Aligned_cols=106 Identities=17% Similarity=0.251 Sum_probs=87.0
Q ss_pred CCCCCeEEEEecchhHHHHHHHhc-CCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhc-----C
Q 019699 100 HPNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR-----K 173 (337)
Q Consensus 100 ~~~p~~VLiIG~G~G~~~~~ll~~-~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~-----~ 173 (337)
...+++||+||+|+|..+.++++. ++..+|+.+|+|++..+.|+++|.... + .++++++.+|+.++|++. .
T Consensus 116 ~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aG--l-~~~I~li~GdA~e~L~~l~~~~~~ 192 (278)
T PLN02476 116 ILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAG--V-SHKVNVKHGLAAESLKSMIQNGEG 192 (278)
T ss_pred hcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC--C-CCcEEEEEcCHHHHHHHHHhcccC
Confidence 356899999999999999998874 345689999999999999999997542 2 369999999999998653 3
Q ss_pred CceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699 174 ESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (337)
Q Consensus 174 ~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~ 218 (337)
++||+||+|+..+. -.++|+. +.++|+|||++++.
T Consensus 193 ~~FD~VFIDa~K~~---------Y~~y~e~-~l~lL~~GGvIV~D 227 (278)
T PLN02476 193 SSYDFAFVDADKRM---------YQDYFEL-LLQLVRVGGVIVMD 227 (278)
T ss_pred CCCCEEEECCCHHH---------HHHHHHH-HHHhcCCCcEEEEe
Confidence 58999999985321 2478887 78999999999875
No 27
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.29 E-value=6e-11 Score=104.94 Aligned_cols=102 Identities=19% Similarity=0.245 Sum_probs=81.9
Q ss_pred CCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEEE
Q 019699 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG 181 (337)
Q Consensus 102 ~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~ 181 (337)
.+++||+||||+|.++..++...+..+|++||+++++++.+++...... -++++++.+|+.++. ..++||+|++
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~----~~~i~~i~~d~~~~~--~~~~fD~I~s 115 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELG----LNNVEIVNGRAEDFQ--HEEQFDVITS 115 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhC----CCCeEEEecchhhcc--ccCCccEEEe
Confidence 4789999999999999988776666899999999999999998765432 246999999998852 3478999999
Q ss_pred eCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCC
Q 019699 182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG 220 (337)
Q Consensus 182 D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~ 220 (337)
+... . -.++++. +.+.|+|||++++..+
T Consensus 116 ~~~~----~------~~~~~~~-~~~~LkpgG~lvi~~~ 143 (181)
T TIGR00138 116 RALA----S------LNVLLEL-TLNLLKVGGYFLAYKG 143 (181)
T ss_pred hhhh----C------HHHHHHH-HHHhcCCCCEEEEEcC
Confidence 8621 1 1367787 7899999999998764
No 28
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.27 E-value=4.5e-11 Score=97.45 Aligned_cols=105 Identities=20% Similarity=0.189 Sum_probs=84.1
Q ss_pred CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (337)
Q Consensus 101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi 180 (337)
....+||+||+|.|..+.+++++.+..+|+++|+++.+++.+++++.... -++++++.+|+...+....++||+|+
T Consensus 18 ~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~D~v~ 93 (124)
T TIGR02469 18 RPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFG----VSNIVIVEGDAPEALEDSLPEPDRVF 93 (124)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhC----CCceEEEeccccccChhhcCCCCEEE
Confidence 44579999999999999999987666899999999999999999876432 35789999998765544456899999
Q ss_pred EeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (337)
Q Consensus 181 ~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~ 219 (337)
++.... . ..++++. +.+.|+|||.++++.
T Consensus 94 ~~~~~~-------~--~~~~l~~-~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 94 IGGSGG-------L--LQEILEA-IWRRLRPGGRIVLNA 122 (124)
T ss_pred ECCcch-------h--HHHHHHH-HHHHcCCCCEEEEEe
Confidence 975311 1 2478888 899999999999874
No 29
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.27 E-value=3.3e-10 Score=111.74 Aligned_cols=116 Identities=24% Similarity=0.285 Sum_probs=86.6
Q ss_pred CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhc---CCcee
Q 019699 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR---KESYD 177 (337)
Q Consensus 101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~---~~~yD 177 (337)
.++++||++|+|+|+++..++.. +..+|++||+|+..++.|++++..++ ++..+++++.+|+++++++. .++||
T Consensus 219 ~~g~rVLDlfsgtG~~~l~aa~~-ga~~V~~VD~s~~al~~a~~N~~~Ng--l~~~~v~~i~~D~~~~l~~~~~~~~~fD 295 (396)
T PRK15128 219 VENKRVLNCFSYTGGFAVSALMG-GCSQVVSVDTSQEALDIARQNVELNK--LDLSKAEFVRDDVFKLLRTYRDRGEKFD 295 (396)
T ss_pred cCCCeEEEeccCCCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcC--CCCCcEEEEEccHHHHHHHHHhcCCCCC
Confidence 35789999999999998877664 46799999999999999999998763 33358999999999998652 46899
Q ss_pred EEEEeCCCCCCCCCCcCCch-----HHHHHHHhccccCCCceEEEeCCCC
Q 019699 178 VIIGDLADPIEGGPCYKLYT-----KSFYEFVVKPRLNPEGIFVTQAGPA 222 (337)
Q Consensus 178 vIi~D~~dp~~~~p~~~L~t-----~ef~~~~~~~~L~p~Gvlv~~~~~p 222 (337)
+||+|++.-.. .. ..+++ .++++. +.++|+|||++++-+.+.
T Consensus 296 lVilDPP~f~~-~k-~~l~~~~~~y~~l~~~-a~~lLk~gG~lv~~scs~ 342 (396)
T PRK15128 296 VIVMDPPKFVE-NK-SQLMGACRGYKDINML-AIQLLNPGGILLTFSCSG 342 (396)
T ss_pred EEEECCCCCCC-Ch-HHHHHHHHHHHHHHHH-HHHHcCCCeEEEEEeCCC
Confidence 99999974211 11 11211 234455 578999999988765443
No 30
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.26 E-value=2.6e-10 Score=100.91 Aligned_cols=124 Identities=15% Similarity=0.142 Sum_probs=91.1
Q ss_pred CCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEE
Q 019699 100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (337)
Q Consensus 100 ~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvI 179 (337)
.++..+||+||||+|.++..+++..+..+|+++|+++.+++.|++++.... -++++++.+|+...+ .++||+|
T Consensus 29 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~----~~~i~~~~~d~~~~~---~~~~D~v 101 (187)
T PRK08287 29 LHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFG----CGNIDIIPGEAPIEL---PGKADAI 101 (187)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhC----CCCeEEEecCchhhc---CcCCCEE
Confidence 456789999999999999999987667899999999999999999876432 246999999975433 3579999
Q ss_pred EEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhh-cCcee
Q 019699 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV-FKYVV 246 (337)
Q Consensus 180 i~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~v-F~~v~ 246 (337)
+++.... . ..++++. +.+.|+|||.++++... .+....+.+.+++. |..+.
T Consensus 102 ~~~~~~~-------~--~~~~l~~-~~~~Lk~gG~lv~~~~~------~~~~~~~~~~l~~~g~~~~~ 153 (187)
T PRK08287 102 FIGGSGG-------N--LTAIIDW-SLAHLHPGGRLVLTFIL------LENLHSALAHLEKCGVSELD 153 (187)
T ss_pred EECCCcc-------C--HHHHHHH-HHHhcCCCeEEEEEEec------HhhHHHHHHHHHHCCCCcce
Confidence 9875311 1 2467887 78999999999886421 22234555566554 44333
No 31
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.25 E-value=2.6e-11 Score=103.59 Aligned_cols=107 Identities=21% Similarity=0.297 Sum_probs=84.0
Q ss_pred CCCCeEEEEecchhHHHHHHH-hcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhc-CCceeE
Q 019699 101 PNPKTIFIMGGGEGSTAREIL-RHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR-KESYDV 178 (337)
Q Consensus 101 ~~p~~VLiIG~G~G~~~~~ll-~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~-~~~yDv 178 (337)
.+..+||++|||+|.++..++ +..+..++++||+++++++.|++.+.... -++++++.+|..+ +... .++||+
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~----~~ni~~~~~d~~~-l~~~~~~~~D~ 76 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELG----LDNIEFIQGDIED-LPQELEEKFDI 76 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTT----STTEEEEESBTTC-GCGCSSTTEEE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccc----ccccceEEeehhc-cccccCCCeeE
Confidence 356899999999999999999 55667899999999999999999876432 2489999999988 6532 278999
Q ss_pred EEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (337)
Q Consensus 179 Ii~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~ 219 (337)
|+++..-.. .-....+++. +.+.|+++|++++..
T Consensus 77 I~~~~~l~~------~~~~~~~l~~-~~~~lk~~G~~i~~~ 110 (152)
T PF13847_consen 77 IISNGVLHH------FPDPEKVLKN-IIRLLKPGGILIISD 110 (152)
T ss_dssp EEEESTGGG------TSHHHHHHHH-HHHHEEEEEEEEEEE
T ss_pred EEEcCchhh------ccCHHHHHHH-HHHHcCCCcEEEEEE
Confidence 999965321 1112468888 799999999998764
No 32
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.24 E-value=2e-10 Score=108.59 Aligned_cols=154 Identities=18% Similarity=0.219 Sum_probs=103.4
Q ss_pred CCCeEEEEEeCCCceEEEEcCccccccCChhhHHHHHHhHHH---hcCCCCCeEEEEecchhHHHHHHHhcCCCcEEEEE
Q 019699 56 RYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPAL---LHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMC 132 (337)
Q Consensus 56 ~~q~I~V~~~~~~G~~L~lDG~~q~~~~de~~Y~e~l~~~~l---~~~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~V 132 (337)
|-|+|.-...- +|..+.++.......++ .+.++.-.+ +....+.+||++|||+|.++..++++.+..+|+++
T Consensus 77 Pl~yi~g~~~f-~g~~f~v~~~vlipr~~----te~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~~~la~~~~~~~v~av 151 (284)
T TIGR03533 77 PVAYLTNEAWF-AGLEFYVDERVLIPRSP----IAELIEDGFAPWLEPEPVKRILDLCTGSGCIAIACAYAFPEAEVDAV 151 (284)
T ss_pred cHHHHcCCCee-cCcEEEECCCCccCCCc----hHHHHHHHHHHHhccCCCCEEEEEeCchhHHHHHHHHHCCCCEEEEE
Confidence 56666543322 36667777655444333 222221111 11234679999999999999999988767799999
Q ss_pred ECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEEEeCCCCC-CC----------CCCcCC------
Q 019699 133 DIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPI-EG----------GPCYKL------ 195 (337)
Q Consensus 133 Eid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~D~~dp~-~~----------~p~~~L------ 195 (337)
|+|+.+++.|+++...+. + +.+++++.+|..+.+. .++||+|++|++.-. .. .|...|
T Consensus 152 Dis~~al~~A~~n~~~~~--~-~~~i~~~~~D~~~~~~--~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dG 226 (284)
T TIGR03533 152 DISPDALAVAEINIERHG--L-EDRVTLIQSDLFAALP--GRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDG 226 (284)
T ss_pred ECCHHHHHHHHHHHHHcC--C-CCcEEEEECchhhccC--CCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcH
Confidence 999999999999976542 1 3589999999877653 357999999986211 00 011111
Q ss_pred --chHHHHHHHhccccCCCceEEEeCC
Q 019699 196 --YTKSFYEFVVKPRLNPEGIFVTQAG 220 (337)
Q Consensus 196 --~t~ef~~~~~~~~L~p~Gvlv~~~~ 220 (337)
+.+.+++. +.++|+|||.+++..+
T Consensus 227 l~~~~~il~~-a~~~L~~gG~l~~e~g 252 (284)
T TIGR03533 227 LDLVRRILAE-AADHLNENGVLVVEVG 252 (284)
T ss_pred HHHHHHHHHH-HHHhcCCCCEEEEEEC
Confidence 12456776 6889999999999875
No 33
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.24 E-value=5e-10 Score=104.59 Aligned_cols=113 Identities=20% Similarity=0.333 Sum_probs=84.6
Q ss_pred CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (337)
Q Consensus 101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi 180 (337)
.++.+||++|||+|.++..++++.+..+++++|+++.+++.|++++... ...+++++.+|..+.+. .++||+|+
T Consensus 107 ~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~----~~~~i~~~~~d~~~~~~--~~~fD~Iv 180 (275)
T PRK09328 107 KEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHG----LGARVEFLQGDWFEPLP--GGRFDLIV 180 (275)
T ss_pred cCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhC----CCCcEEEEEccccCcCC--CCceeEEE
Confidence 4567999999999999999999877789999999999999999987611 24689999999855432 36899999
Q ss_pred EeCCCCCC------------CCCCcCCch--------HHHHHHHhccccCCCceEEEeCC
Q 019699 181 GDLADPIE------------GGPCYKLYT--------KSFYEFVVKPRLNPEGIFVTQAG 220 (337)
Q Consensus 181 ~D~~dp~~------------~~p~~~L~t--------~ef~~~~~~~~L~p~Gvlv~~~~ 220 (337)
++++.-.. ..|...++. ..+++. +.+.|+|||.+++..+
T Consensus 181 ~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~-~~~~Lk~gG~l~~e~g 239 (275)
T PRK09328 181 SNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQ-APRYLKPGGWLLLEIG 239 (275)
T ss_pred ECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHH-HHHhcccCCEEEEEEC
Confidence 99862110 011111221 446666 5799999999998764
No 34
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.21 E-value=4e-10 Score=106.48 Aligned_cols=155 Identities=19% Similarity=0.287 Sum_probs=103.2
Q ss_pred cCCCeEEEEEeCCCceEEEEcCccccccCChhhHHHHHHhHHH--h-cCCCCCeEEEEecchhHHHHHHHhcCCCcEEEE
Q 019699 55 TRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPAL--L-HHPNPKTIFIMGGGEGSTAREILRHKTVEKVVM 131 (337)
Q Consensus 55 s~~q~I~V~~~~~~G~~L~lDG~~q~~~~de~~Y~e~l~~~~l--~-~~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~ 131 (337)
-|.|+|.=... -+|+-+.++-......++ +|.++...+ + ......+||++|||+|.++..++++.+..+|++
T Consensus 69 ~pl~yi~g~~~-f~g~~f~v~~~vliPr~e----te~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~~~~~~v~a 143 (284)
T TIGR00536 69 VPVAYLLGSKE-FYGLEFFVNEHVLIPRPE----TEELVEKALASLISQNPILHILDLGTGSGCIALALAYEFPNAEVIA 143 (284)
T ss_pred CCHHHHhCcce-EcCeEEEECCCCcCCCCc----cHHHHHHHHHHhhhcCCCCEEEEEeccHhHHHHHHHHHCCCCEEEE
Confidence 45666643322 247777777665554443 222222222 1 122226999999999999999998876779999
Q ss_pred EECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEEEeCCCCCCC-----------CCCcCC-----
Q 019699 132 CDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEG-----------GPCYKL----- 195 (337)
Q Consensus 132 VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~D~~dp~~~-----------~p~~~L----- 195 (337)
+|++++.++.|+++...+. + ..+++++.+|..+.+. .++||+|++|++.-... .|...|
T Consensus 144 vDis~~al~~a~~n~~~~~--~-~~~v~~~~~d~~~~~~--~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~d 218 (284)
T TIGR00536 144 VDISPDALAVAEENAEKNQ--L-EHRVEFIQSNLFEPLA--GQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDD 218 (284)
T ss_pred EECCHHHHHHHHHHHHHcC--C-CCcEEEEECchhccCc--CCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCc
Confidence 9999999999999876442 1 3479999999876543 23799999998621110 111111
Q ss_pred ---chHHHHHHHhccccCCCceEEEeCC
Q 019699 196 ---YTKSFYEFVVKPRLNPEGIFVTQAG 220 (337)
Q Consensus 196 ---~t~ef~~~~~~~~L~p~Gvlv~~~~ 220 (337)
+-+.+++. +.+.|+|||++++..+
T Consensus 219 gl~~~~~ii~~-a~~~L~~gG~l~~e~g 245 (284)
T TIGR00536 219 GLNILRQIIEL-APDYLKPNGFLVCEIG 245 (284)
T ss_pred HHHHHHHHHHH-HHHhccCCCEEEEEEC
Confidence 22456666 6789999999999875
No 35
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.21 E-value=8e-10 Score=98.85 Aligned_cols=130 Identities=18% Similarity=0.133 Sum_probs=97.1
Q ss_pred cCCCCCeEEEEecchhHHHHHHHhc-CCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCcee
Q 019699 99 HHPNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYD 177 (337)
Q Consensus 99 ~~~~p~~VLiIG~G~G~~~~~ll~~-~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yD 177 (337)
......+||++|+|+|.++.++++. .+..+|+++|+++.+++.+++++..+. . ..+++++.+|+.+++.....+||
T Consensus 37 ~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g--~-~~~v~~~~~d~~~~l~~~~~~~D 113 (198)
T PRK00377 37 RLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFG--V-LNNIVLIKGEAPEILFTINEKFD 113 (198)
T ss_pred CCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhC--C-CCCeEEEEechhhhHhhcCCCCC
Confidence 3356689999999999999998875 345689999999999999999876432 1 35789999999888766557899
Q ss_pred EEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhh-cCceeEE
Q 019699 178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV-FKYVVPY 248 (337)
Q Consensus 178 vIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~v-F~~v~~~ 248 (337)
.|+++.... . -.++++. +.++|+|||.+++... ..+.+..+.+.+++. | .+..+
T Consensus 114 ~V~~~~~~~---~------~~~~l~~-~~~~LkpgG~lv~~~~------~~~~~~~~~~~l~~~g~-~~~~~ 168 (198)
T PRK00377 114 RIFIGGGSE---K------LKEIISA-SWEIIKKGGRIVIDAI------LLETVNNALSALENIGF-NLEIT 168 (198)
T ss_pred EEEECCCcc---c------HHHHHHH-HHHHcCCCcEEEEEee------cHHHHHHHHHHHHHcCC-CeEEE
Confidence 999965211 1 1467887 7899999999987642 344566777777654 4 44433
No 36
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.21 E-value=4.5e-10 Score=107.33 Aligned_cols=156 Identities=17% Similarity=0.198 Sum_probs=103.5
Q ss_pred cCCCeEEEEEeCCCceEEEEcCccccccCChhhHHHHHHhH--HHhcCCCCCeEEEEecchhHHHHHHHhcCCCcEEEEE
Q 019699 55 TRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHP--ALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMC 132 (337)
Q Consensus 55 s~~q~I~V~~~~~~G~~L~lDG~~q~~~~de~~Y~e~l~~~--~l~~~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~V 132 (337)
-|.|+|.=...- +|..+.++-.+....++. .+.+... ..+....+.+||++|||+|.++..++++.+..+|+++
T Consensus 88 ~Pl~yi~g~~~F-~g~~f~v~~~vlipr~~t---e~lv~~~l~~~~~~~~~~~VLDlG~GsG~iai~la~~~p~~~V~av 163 (307)
T PRK11805 88 IPAAYLTNEAWF-CGLEFYVDERVLVPRSPI---AELIEDGFAPWLEDPPVTRILDLCTGSGCIAIACAYAFPDAEVDAV 163 (307)
T ss_pred ccHHHHcCcceE-cCcEEEECCCCcCCCCch---HHHHHHHHHHHhccCCCCEEEEEechhhHHHHHHHHHCCCCEEEEE
Confidence 366666543322 366677776554443331 1111111 1111122378999999999999999988777899999
Q ss_pred ECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEEEeCCC-CCC----------CCCCcCCc-----
Q 019699 133 DIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLAD-PIE----------GGPCYKLY----- 196 (337)
Q Consensus 133 Eid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~D~~d-p~~----------~~p~~~L~----- 196 (337)
|+|+.+++.|+++...+. + ..+++++.+|..+.+. .++||+|++|++. +.. ..|...|+
T Consensus 164 Dis~~al~~A~~n~~~~~--l-~~~i~~~~~D~~~~l~--~~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dG 238 (307)
T PRK11805 164 DISPDALAVAEINIERHG--L-EDRVTLIESDLFAALP--GRRYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDG 238 (307)
T ss_pred eCCHHHHHHHHHHHHHhC--C-CCcEEEEECchhhhCC--CCCccEEEECCCCCCccchhhcCHhhccCccceeeCCCch
Confidence 999999999999986542 1 3579999999887663 3579999999862 110 01211121
Q ss_pred ---hHHHHHHHhccccCCCceEEEeCC
Q 019699 197 ---TKSFYEFVVKPRLNPEGIFVTQAG 220 (337)
Q Consensus 197 ---t~ef~~~~~~~~L~p~Gvlv~~~~ 220 (337)
.+.+++. +.++|+|||.+++..+
T Consensus 239 l~~~~~i~~~-a~~~L~pgG~l~~E~g 264 (307)
T PRK11805 239 LDLVRRILAE-APDYLTEDGVLVVEVG 264 (307)
T ss_pred HHHHHHHHHH-HHHhcCCCCEEEEEEC
Confidence 2456776 6889999999999864
No 37
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.21 E-value=5.5e-10 Score=113.52 Aligned_cols=155 Identities=20% Similarity=0.324 Sum_probs=108.4
Q ss_pred cCCCeEEEEEeCCCceEEEEcCccccccCChhhHHHHHHhHHHhc--------------------------CCCCCeEEE
Q 019699 55 TRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLH--------------------------HPNPKTIFI 108 (337)
Q Consensus 55 s~~q~I~V~~~~~~G~~L~lDG~~q~~~~de~~Y~e~l~~~~l~~--------------------------~~~p~~VLi 108 (337)
-|.|+|.=...- +|+-+.+|-.+....++ +|.|+...+-. ..++.+||+
T Consensus 70 ePlqYI~G~~~F-~g~~f~V~~~VLIPRpe----TE~Lve~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VLD 144 (506)
T PRK01544 70 EPIAYITGVKEF-YSREFIVNKHVLIPRSD----TEVLVDVVFQCHSRESGNPEKKQLNPCFRGNDISSNCNDKFLNILE 144 (506)
T ss_pred CCHHHHhCcCEE-cCcEEEeCCCcccCCCc----HHHHHHHHHHHhhhccccccccccccccccccccccccCCCCEEEE
Confidence 466776654333 58889999888887666 55554433211 113568999
Q ss_pred EecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEEEeCCC-CC
Q 019699 109 MGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLAD-PI 187 (337)
Q Consensus 109 IG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~D~~d-p~ 187 (337)
||||+|.++..+++..+..+|+++|+|+.+++.|+++...+. + +.+++++.+|..+.+. .++||+|+++++. +.
T Consensus 145 lG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~--l-~~~v~~~~~D~~~~~~--~~~fDlIvsNPPYi~~ 219 (506)
T PRK01544 145 LGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYE--V-TDRIQIIHSNWFENIE--KQKFDFIVSNPPYISH 219 (506)
T ss_pred ccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcC--C-ccceeeeecchhhhCc--CCCccEEEECCCCCCc
Confidence 999999999999877667899999999999999999875432 1 3589999999876653 3579999999862 11
Q ss_pred CC-----------CCCcCCc----hHHHH----HHHhccccCCCceEEEeCC
Q 019699 188 EG-----------GPCYKLY----TKSFY----EFVVKPRLNPEGIFVTQAG 220 (337)
Q Consensus 188 ~~-----------~p~~~L~----t~ef~----~~~~~~~L~p~Gvlv~~~~ 220 (337)
.. .|...|+ ..++| +. +.+.|+|||.+++..+
T Consensus 220 ~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~-a~~~L~~gG~l~lEig 270 (506)
T PRK01544 220 SEKSEMAIETINYEPSIALFAEEDGLQAYFIIAEN-AKQFLKPNGKIILEIG 270 (506)
T ss_pred hhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHH-HHHhccCCCEEEEEEC
Confidence 00 1211233 22344 45 5689999999998764
No 38
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.21 E-value=6.2e-10 Score=105.02 Aligned_cols=153 Identities=22% Similarity=0.281 Sum_probs=104.0
Q ss_pred ecCCCeEEEEEeCCCceEEEEcCccccccCChhhHHHHHHhHHH--hcCCCCCeEEEEecchhHHHHHHHhcCCCcEEEE
Q 019699 54 ETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPAL--LHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVM 131 (337)
Q Consensus 54 ~s~~q~I~V~~~~~~G~~L~lDG~~q~~~~de~~Y~e~l~~~~l--~~~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~ 131 (337)
.-|-|+|.-... .+|..+.++-.+.....| +|.++...+ ..+... +||+||+|+|.++..++++.+..+|++
T Consensus 66 ~~P~~yi~g~~~-f~gl~~~v~~~vliPr~d----Te~Lve~~l~~~~~~~~-~ilDlGTGSG~iai~la~~~~~~~V~a 139 (280)
T COG2890 66 GEPVAYILGSAE-FGGLRFKVDEGVLIPRPD----TELLVEAALALLLQLDK-RILDLGTGSGAIAIALAKEGPDAEVIA 139 (280)
T ss_pred CCCHhHhhccCe-ecceeeeeCCCceecCCc----hHHHHHHHHHhhhhcCC-cEEEecCChHHHHHHHHhhCcCCeEEE
Confidence 334555554322 246778888777777677 444433222 112222 899999999999999999988889999
Q ss_pred EECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEEEeCCC-CCC---C-------CCCcCC-----
Q 019699 132 CDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLAD-PIE---G-------GPCYKL----- 195 (337)
Q Consensus 132 VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~D~~d-p~~---~-------~p~~~L----- 195 (337)
+||++..+++|+++...+. + .++.++.+|..+-+ .++||+|++++|- |.. . .|...|
T Consensus 140 ~Dis~~Al~~A~~Na~~~~--l--~~~~~~~~dlf~~~---~~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~d 212 (280)
T COG2890 140 VDISPDALALARENAERNG--L--VRVLVVQSDLFEPL---RGKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGD 212 (280)
T ss_pred EECCHHHHHHHHHHHHHcC--C--ccEEEEeeeccccc---CCceeEEEeCCCCCCCcccccChhhhccCHHHHHccCcc
Confidence 9999999999999987653 1 45666666654443 4599999999982 221 0 111011
Q ss_pred ---chHHHHHHHhccccCCCceEEEeCC
Q 019699 196 ---YTKSFYEFVVKPRLNPEGIFVTQAG 220 (337)
Q Consensus 196 ---~t~ef~~~~~~~~L~p~Gvlv~~~~ 220 (337)
..+.|... +.+.|+|+|++++..+
T Consensus 213 Gl~~~~~i~~~-a~~~l~~~g~l~le~g 239 (280)
T COG2890 213 GLEVYRRILGE-APDILKPGGVLILEIG 239 (280)
T ss_pred HHHHHHHHHHh-hHHHcCCCcEEEEEEC
Confidence 22456666 6899999999999875
No 39
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.20 E-value=8.5e-10 Score=101.38 Aligned_cols=113 Identities=17% Similarity=0.252 Sum_probs=85.1
Q ss_pred CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (337)
Q Consensus 101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi 180 (337)
+.+.+||++|||+|..+..+++..+..+++++|+++.+++.|++.+.... -++++++.+|+.+.+. .++||+|+
T Consensus 86 ~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~----~~~~~~~~~d~~~~~~--~~~fD~Vi 159 (251)
T TIGR03534 86 KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLG----LDNVTFLQSDWFEPLP--GGKFDLIV 159 (251)
T ss_pred cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcC----CCeEEEEECchhccCc--CCceeEEE
Confidence 45679999999999999999987667799999999999999999876432 2479999999877542 47899999
Q ss_pred EeCCCCCCCCC---CcC---------C--------chHHHHHHHhccccCCCceEEEeCC
Q 019699 181 GDLADPIEGGP---CYK---------L--------YTKSFYEFVVKPRLNPEGIFVTQAG 220 (337)
Q Consensus 181 ~D~~dp~~~~p---~~~---------L--------~t~ef~~~~~~~~L~p~Gvlv~~~~ 220 (337)
+|++-.....+ ... + .-..|++. +.+.|+|||.+++..+
T Consensus 160 ~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~-~~~~L~~gG~~~~~~~ 218 (251)
T TIGR03534 160 SNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQ-APRLLKPGGWLLLEIG 218 (251)
T ss_pred ECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHH-HHHhcccCCEEEEEEC
Confidence 99862210000 000 0 01357777 7899999999998753
No 40
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.20 E-value=1.1e-10 Score=109.65 Aligned_cols=125 Identities=18% Similarity=0.257 Sum_probs=95.4
Q ss_pred CCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEEEe
Q 019699 103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGD 182 (337)
Q Consensus 103 p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~D 182 (337)
..+|||+|||.|.++..+++..|..++++||+|...++.||+++..+. . ++.+++..|..+-+. ++||.||++
T Consensus 159 ~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~--~--~~~~v~~s~~~~~v~---~kfd~IisN 231 (300)
T COG2813 159 GGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANG--V--ENTEVWASNLYEPVE---GKFDLIISN 231 (300)
T ss_pred CCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcC--C--CccEEEEeccccccc---ccccEEEeC
Confidence 459999999999999999999889999999999999999999987653 1 222788888765554 489999999
Q ss_pred CCCCCCCCCC-cCCchHHHHHHHhccccCCCceE--EEeCCCCCcCCChhHHHHHHHHHhhhcCceeEE
Q 019699 183 LADPIEGGPC-YKLYTKSFYEFVVKPRLNPEGIF--VTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPY 248 (337)
Q Consensus 183 ~~dp~~~~p~-~~L~t~ef~~~~~~~~L~p~Gvl--v~~~~~p~~~~~~~~~~~i~~~l~~vF~~v~~~ 248 (337)
++-.. |.. .+-...++++. ++++|++||-| |+|.. + .....|+++|.+|...
T Consensus 232 PPfh~--G~~v~~~~~~~~i~~-A~~~L~~gGeL~iVan~~-l----------~y~~~L~~~Fg~v~~l 286 (300)
T COG2813 232 PPFHA--GKAVVHSLAQEIIAA-AARHLKPGGELWIVANRH-L----------PYEKKLKELFGNVEVL 286 (300)
T ss_pred CCccC--CcchhHHHHHHHHHH-HHHhhccCCEEEEEEcCC-C----------ChHHHHHHhcCCEEEE
Confidence 98543 321 12234589998 89999999965 45522 1 1235788899987654
No 41
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.19 E-value=6e-10 Score=97.85 Aligned_cols=129 Identities=24% Similarity=0.242 Sum_probs=102.8
Q ss_pred HHHHhHHHhcCCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHH
Q 019699 90 ESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAEL 169 (337)
Q Consensus 90 e~l~~~~l~~~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l 169 (337)
++++ +..+...+...+++||+|+|+++.+++...+..+|+++|-|++.++..+++.... .-++++++.+|+-+.|
T Consensus 23 Ral~-ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~f----g~~n~~vv~g~Ap~~L 97 (187)
T COG2242 23 RALT-LSKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARF----GVDNLEVVEGDAPEAL 97 (187)
T ss_pred HHHH-HHhhCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHh----CCCcEEEEeccchHhh
Confidence 4444 2334445567999999999999999997778899999999999999999987643 3589999999999999
Q ss_pred hhcCCceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhh
Q 019699 170 ESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV 241 (337)
Q Consensus 170 ~~~~~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~v 241 (337)
.+.+ ++|.||+...-. -.+.++. +..+|+|||.+++|.. ..+....+++.+++.
T Consensus 98 ~~~~-~~daiFIGGg~~----------i~~ile~-~~~~l~~ggrlV~nai------tlE~~~~a~~~~~~~ 151 (187)
T COG2242 98 PDLP-SPDAIFIGGGGN----------IEEILEA-AWERLKPGGRLVANAI------TLETLAKALEALEQL 151 (187)
T ss_pred cCCC-CCCEEEECCCCC----------HHHHHHH-HHHHcCcCCeEEEEee------cHHHHHHHHHHHHHc
Confidence 8765 899999986521 1366777 7899999999999963 445666677777766
No 42
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.19 E-value=2.4e-10 Score=104.55 Aligned_cols=126 Identities=22% Similarity=0.337 Sum_probs=103.2
Q ss_pred CCCCCeEEEEecchhHHHHHHHhc-CCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeE
Q 019699 100 HPNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV 178 (337)
Q Consensus 100 ~~~p~~VLiIG~G~G~~~~~ll~~-~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDv 178 (337)
.....+||+.|.|+|.++..++.. .+..+|+.+|++++..+.|++++... .+ ..++++..+|..+.... +.||+
T Consensus 92 i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~--~l-~d~v~~~~~Dv~~~~~~--~~vDa 166 (256)
T COG2519 92 ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEF--GL-GDRVTLKLGDVREGIDE--EDVDA 166 (256)
T ss_pred CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHh--cc-ccceEEEeccccccccc--cccCE
Confidence 356789999999999999999964 45689999999999999999998754 23 34599999999988754 48999
Q ss_pred EEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhh-cCceeEE
Q 019699 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV-FKYVVPY 248 (337)
Q Consensus 179 Ii~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~v-F~~v~~~ 248 (337)
|++|.++|| ++.+. ++++|+|||.+++.+ | .-++.+.++..|++. |-+...+
T Consensus 167 v~LDmp~PW-----------~~le~-~~~~Lkpgg~~~~y~--P----~veQv~kt~~~l~~~g~~~ie~~ 219 (256)
T COG2519 167 VFLDLPDPW-----------NVLEH-VSDALKPGGVVVVYS--P----TVEQVEKTVEALRERGFVDIEAV 219 (256)
T ss_pred EEEcCCChH-----------HHHHH-HHHHhCCCcEEEEEc--C----CHHHHHHHHHHHHhcCccchhhh
Confidence 999999988 56677 799999999999874 3 346777888888888 6655444
No 43
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.19 E-value=2.5e-10 Score=111.70 Aligned_cols=131 Identities=18% Similarity=0.228 Sum_probs=94.9
Q ss_pred CCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEEEe
Q 019699 103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGD 182 (337)
Q Consensus 103 p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~D 182 (337)
..+|||||||+|.++..+++..+..+|++||+++.+++.|++++..+... ...+++++.+|+...+. ..+||+|+++
T Consensus 229 ~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~-~~~~v~~~~~D~l~~~~--~~~fDlIlsN 305 (378)
T PRK15001 229 EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPE-ALDRCEFMINNALSGVE--PFRFNAVLCN 305 (378)
T ss_pred CCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcc-cCceEEEEEccccccCC--CCCEEEEEEC
Confidence 46999999999999999998877789999999999999999988654210 12478999999876542 3579999999
Q ss_pred CCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhhcCceeE
Q 019699 183 LADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVP 247 (337)
Q Consensus 183 ~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~vF~~v~~ 247 (337)
++.......... ....+++. ++++|+|||.+.+-.. .+. .....|++.|..+..
T Consensus 306 PPfh~~~~~~~~-ia~~l~~~-a~~~LkpGG~L~iV~n-----r~l----~y~~~L~~~fg~~~~ 359 (378)
T PRK15001 306 PPFHQQHALTDN-VAWEMFHH-ARRCLKINGELYIVAN-----RHL----DYFHKLKKIFGNCTT 359 (378)
T ss_pred cCcccCccCCHH-HHHHHHHH-HHHhcccCCEEEEEEe-----cCc----CHHHHHHHHcCCceE
Confidence 874331001111 23578888 7999999998776532 111 123567778887654
No 44
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.18 E-value=5.5e-10 Score=108.21 Aligned_cols=127 Identities=17% Similarity=0.215 Sum_probs=92.1
Q ss_pred CCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEEE
Q 019699 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG 181 (337)
Q Consensus 102 ~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~ 181 (337)
...+|||+|||+|.++..+++..+..+|+++|+|+.+++.|++.+..+. -..+++.+|+...+ .++||+|++
T Consensus 196 ~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~-----l~~~~~~~D~~~~~---~~~fDlIvs 267 (342)
T PRK09489 196 TKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANG-----LEGEVFASNVFSDI---KGRFDMIIS 267 (342)
T ss_pred CCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC-----CCCEEEEccccccc---CCCccEEEE
Confidence 4568999999999999999988777799999999999999999887542 23577888886543 468999999
Q ss_pred eCCCCCCCCCCc-CCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhhcCceeEE
Q 019699 182 DLADPIEGGPCY-KLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPY 248 (337)
Q Consensus 182 D~~dp~~~~p~~-~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~vF~~v~~~ 248 (337)
+++-.. +... .-...+|++. +.++|+|||.+.+-... +.. + -..+.+.|+.+...
T Consensus 268 NPPFH~--g~~~~~~~~~~~i~~-a~~~LkpgG~L~iVan~---~l~---y---~~~l~~~Fg~~~~l 323 (342)
T PRK09489 268 NPPFHD--GIQTSLDAAQTLIRG-AVRHLNSGGELRIVANA---FLP---Y---PDLLDETFGSHEVL 323 (342)
T ss_pred CCCccC--CccccHHHHHHHHHH-HHHhcCcCCEEEEEEeC---CCC---h---HHHHHHHcCCeEEE
Confidence 986433 2111 1123689998 89999999987553321 111 1 13566778877544
No 45
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.18 E-value=5.1e-10 Score=109.35 Aligned_cols=130 Identities=16% Similarity=0.182 Sum_probs=101.6
Q ss_pred CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhc-CCceeEE
Q 019699 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR-KESYDVI 179 (337)
Q Consensus 101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~-~~~yDvI 179 (337)
.....+|+||||+|..+..+++..+...+++||+++.+++.|.+...... -++++++.+|+..++... .+++|.|
T Consensus 121 ~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~g----L~NV~~i~~DA~~ll~~~~~~s~D~I 196 (390)
T PRK14121 121 NQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLN----LKNLLIINYDARLLLELLPSNSVEKI 196 (390)
T ss_pred CCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcC----CCcEEEEECCHHHhhhhCCCCceeEE
Confidence 34568999999999999999988778899999999999999988765431 257999999998775432 4789999
Q ss_pred EEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhh
Q 019699 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV 241 (337)
Q Consensus 180 i~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~v 241 (337)
++..++||...+...+...+|++. ++++|+|||.+.+.+. +.+.+..+...+.+.
T Consensus 197 ~lnFPdPW~KkrHRRlv~~~fL~e-~~RvLkpGG~l~l~TD------~~~y~~~~~e~~~~~ 251 (390)
T PRK14121 197 FVHFPVPWDKKPHRRVISEDFLNE-ALRVLKPGGTLELRTD------SELYFEFSLELFLKL 251 (390)
T ss_pred EEeCCCCccccchhhccHHHHHHH-HHHHcCCCcEEEEEEE------CHHHHHHHHHHHHhC
Confidence 999999984333235677899998 8999999999988753 344555555555443
No 46
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=99.18 E-value=7.6e-10 Score=108.37 Aligned_cols=115 Identities=17% Similarity=0.239 Sum_probs=90.4
Q ss_pred CCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhc---CCceeE
Q 019699 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR---KESYDV 178 (337)
Q Consensus 102 ~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~---~~~yDv 178 (337)
+.++||.+-+=+|+.+..++.- +..+||.||++...++.|++++.+++ ++..+.+++.+|+++|++.. +++||+
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~g-GA~~vt~VD~S~~al~~a~~N~~LNg--~~~~~~~~i~~Dvf~~l~~~~~~g~~fDl 293 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAALG-GASEVTSVDLSKRALEWARENAELNG--LDGDRHRFIVGDVFKWLRKAERRGEKFDL 293 (393)
T ss_pred cCCeEEEecccCcHHHHHHHhc-CCCceEEEeccHHHHHHHHHHHHhcC--CCccceeeehhhHHHHHHHHHhcCCcccE
Confidence 4899999999999999998874 56799999999999999999999874 55678999999999999875 359999
Q ss_pred EEEeCCCCCCCCCCcCCch--H---HHHHHHhccccCCCceEEEeCCCC
Q 019699 179 IIGDLADPIEGGPCYKLYT--K---SFYEFVVKPRLNPEGIFVTQAGPA 222 (337)
Q Consensus 179 Ii~D~~dp~~~~p~~~L~t--~---ef~~~~~~~~L~p~Gvlv~~~~~p 222 (337)
||+|+|.-.. ++ ..++. + +.... +.++|+|||++++-+.+.
T Consensus 294 IilDPPsF~r-~k-~~~~~~~rdy~~l~~~-~~~iL~pgG~l~~~s~~~ 339 (393)
T COG1092 294 IILDPPSFAR-SK-KQEFSAQRDYKDLNDL-ALRLLAPGGTLVTSSCSR 339 (393)
T ss_pred EEECCccccc-Cc-ccchhHHHHHHHHHHH-HHHHcCCCCEEEEEecCC
Confidence 9999984322 22 12222 2 23343 468999999998766543
No 47
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.18 E-value=9.5e-11 Score=104.53 Aligned_cols=126 Identities=15% Similarity=0.196 Sum_probs=97.5
Q ss_pred HHHHHhHHHhcCCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHH
Q 019699 89 HESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE 168 (337)
Q Consensus 89 ~e~l~~~~l~~~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~ 168 (337)
.+.+.++|+ ..+.+|.+||||.|..+..++++.|...|+++|-|++|++.|++.+ |++++..+|.+.|
T Consensus 20 ~dLla~Vp~---~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl---------p~~~f~~aDl~~w 87 (257)
T COG4106 20 RDLLARVPL---ERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL---------PDATFEEADLRTW 87 (257)
T ss_pred HHHHhhCCc---cccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC---------CCCceecccHhhc
Confidence 466777666 4788999999999999999999999999999999999999998864 6788999999998
Q ss_pred HhhcCCceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHH
Q 019699 169 LESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTL 238 (337)
Q Consensus 169 l~~~~~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l 238 (337)
- .....|+|+.++.-.| -| .| .+.|.. +-..|+|||++.+|. |+ ..+...+..+..+.
T Consensus 88 ~--p~~~~dllfaNAvlqW--lp-dH---~~ll~r-L~~~L~Pgg~LAVQm--Pd-N~depsH~~mr~~A 145 (257)
T COG4106 88 K--PEQPTDLLFANAVLQW--LP-DH---PELLPR-LVSQLAPGGVLAVQM--PD-NLDEPSHRLMRETA 145 (257)
T ss_pred C--CCCccchhhhhhhhhh--cc-cc---HHHHHH-HHHhhCCCceEEEEC--CC-ccCchhHHHHHHHH
Confidence 3 3467999999998666 33 22 245566 578999999999997 32 23334444444443
No 48
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.17 E-value=8.4e-10 Score=98.43 Aligned_cols=104 Identities=21% Similarity=0.210 Sum_probs=82.5
Q ss_pred CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (337)
Q Consensus 101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi 180 (337)
....+||++|||+|.++.++++..+..+|++||+|+++++.+++++.... -++++++.+|+.+.+......+|.|+
T Consensus 39 ~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~----~~~v~~~~~d~~~~~~~~~~~~d~v~ 114 (196)
T PRK07402 39 EPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFG----VKNVEVIEGSAPECLAQLAPAPDRVC 114 (196)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhC----CCCeEEEECchHHHHhhCCCCCCEEE
Confidence 45679999999999999999876556899999999999999999876432 24799999999776544445678888
Q ss_pred EeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (337)
Q Consensus 181 ~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~ 219 (337)
++... + -.++++. +.++|+|||.+++..
T Consensus 115 ~~~~~-----~-----~~~~l~~-~~~~LkpgG~li~~~ 142 (196)
T PRK07402 115 IEGGR-----P-----IKEILQA-VWQYLKPGGRLVATA 142 (196)
T ss_pred EECCc-----C-----HHHHHHH-HHHhcCCCeEEEEEe
Confidence 87421 1 1467887 789999999999875
No 49
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.17 E-value=1.8e-10 Score=106.98 Aligned_cols=100 Identities=18% Similarity=0.182 Sum_probs=80.6
Q ss_pred CCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEE
Q 019699 100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (337)
Q Consensus 100 ~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvI 179 (337)
...+.+||+||||+|.+++.+++..+..+|+++|+++.+++.|++. +++++.+|+.++. ..++||+|
T Consensus 27 ~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~-----------~~~~~~~d~~~~~--~~~~fD~v 93 (255)
T PRK14103 27 AERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER-----------GVDARTGDVRDWK--PKPDTDVV 93 (255)
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc-----------CCcEEEcChhhCC--CCCCceEE
Confidence 3567899999999999999999876667999999999999999762 4778999987763 24689999
Q ss_pred EEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (337)
Q Consensus 180 i~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~ 219 (337)
++...-.+ -+ -...+++. +.++|+|||.+++..
T Consensus 94 ~~~~~l~~--~~----d~~~~l~~-~~~~LkpgG~l~~~~ 126 (255)
T PRK14103 94 VSNAALQW--VP----EHADLLVR-WVDELAPGSWIAVQV 126 (255)
T ss_pred EEehhhhh--CC----CHHHHHHH-HHHhCCCCcEEEEEc
Confidence 99876433 11 12567888 799999999998874
No 50
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.17 E-value=8.1e-10 Score=102.63 Aligned_cols=111 Identities=14% Similarity=0.167 Sum_probs=82.5
Q ss_pred CCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhh-cCCceeEEE
Q 019699 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDVII 180 (337)
Q Consensus 102 ~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~-~~~~yDvIi 180 (337)
.+.+||++|||+|.++..+++..+..+|++||+|+.+++.|++++..+ +++++.+|..+++.. ..++||+|+
T Consensus 86 ~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~-------~~~~~~~D~~~~l~~~~~~~fDlVv 158 (251)
T TIGR03704 86 GTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADA-------GGTVHEGDLYDALPTALRGRVDILA 158 (251)
T ss_pred CCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc-------CCEEEEeechhhcchhcCCCEeEEE
Confidence 346899999999999999988766679999999999999999987643 147899998887643 235799999
Q ss_pred EeCCC-CCCC-----------CCCcCCc--------hHHHHHHHhccccCCCceEEEeCC
Q 019699 181 GDLAD-PIEG-----------GPCYKLY--------TKSFYEFVVKPRLNPEGIFVTQAG 220 (337)
Q Consensus 181 ~D~~d-p~~~-----------~p~~~L~--------t~ef~~~~~~~~L~p~Gvlv~~~~ 220 (337)
+|++- |... .|...|+ -+.+++. +.+.|+|||.+++-.+
T Consensus 159 ~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~-a~~~L~~gG~l~l~~~ 217 (251)
T TIGR03704 159 ANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAG-APDWLAPGGHLLVETS 217 (251)
T ss_pred ECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHH-HHHhcCCCCEEEEEEC
Confidence 99972 2110 1111111 2456666 6799999999988653
No 51
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.16 E-value=2.4e-10 Score=106.03 Aligned_cols=101 Identities=18% Similarity=0.296 Sum_probs=82.7
Q ss_pred CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (337)
Q Consensus 101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi 180 (337)
.++.+||+||||+|.++..+++..+..+|++||+++.+++.|++.+ ++++++.+|+..+.. .++||+|+
T Consensus 30 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~---------~~~~~~~~d~~~~~~--~~~fD~v~ 98 (258)
T PRK01683 30 ENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL---------PDCQFVEADIASWQP--PQALDLIF 98 (258)
T ss_pred cCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC---------CCCeEEECchhccCC--CCCccEEE
Confidence 4578999999999999999998766789999999999999999863 467899999887642 36899999
Q ss_pred EeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (337)
Q Consensus 181 ~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~ 219 (337)
++..-.+. + -...+++. +.++|+|||.++++.
T Consensus 99 ~~~~l~~~--~----d~~~~l~~-~~~~LkpgG~~~~~~ 130 (258)
T PRK01683 99 ANASLQWL--P----DHLELFPR-LVSLLAPGGVLAVQM 130 (258)
T ss_pred EccChhhC--C----CHHHHHHH-HHHhcCCCcEEEEEC
Confidence 98764431 1 12578888 799999999999875
No 52
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=99.15 E-value=2.5e-10 Score=105.61 Aligned_cols=106 Identities=15% Similarity=0.148 Sum_probs=87.3
Q ss_pred CCCCCeEEEEecchhHHHHHHHhc-CCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhc------
Q 019699 100 HPNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR------ 172 (337)
Q Consensus 100 ~~~p~~VLiIG~G~G~~~~~ll~~-~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~------ 172 (337)
..++++||+||.+.|..+..+++- ++..+|+.+|+|++..+.|+++|.... + ..+++++.+|+.+.|.+.
T Consensus 77 ~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag--~-~~~I~~~~G~a~e~L~~l~~~~~~ 153 (247)
T PLN02589 77 LINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAG--V-AHKIDFREGPALPVLDQMIEDGKY 153 (247)
T ss_pred HhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCC--C-CCceEEEeccHHHHHHHHHhcccc
Confidence 357899999999999999888764 456799999999999999999997542 2 479999999999998763
Q ss_pred CCceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699 173 KESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (337)
Q Consensus 173 ~~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~ 218 (337)
.++||+||+|+.- ..| .++|+. +.++|++||++++.
T Consensus 154 ~~~fD~iFiDadK--------~~Y-~~y~~~-~l~ll~~GGviv~D 189 (247)
T PLN02589 154 HGTFDFIFVDADK--------DNY-INYHKR-LIDLVKVGGVIGYD 189 (247)
T ss_pred CCcccEEEecCCH--------HHh-HHHHHH-HHHhcCCCeEEEEc
Confidence 3689999999752 122 478887 78999999999874
No 53
>PLN03075 nicotianamine synthase; Provisional
Probab=99.15 E-value=9.1e-10 Score=103.99 Aligned_cols=153 Identities=16% Similarity=0.151 Sum_probs=99.5
Q ss_pred CCCCeEEEEecchhHHH-H-HHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeE
Q 019699 101 PNPKTIFIMGGGEGSTA-R-EILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV 178 (337)
Q Consensus 101 ~~p~~VLiIG~G~G~~~-~-~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDv 178 (337)
..|++||+||+|.|.+. . .+.++.+..+++.+|+|++.++.||+++.... .+ .+|++++.+|+.+.... .++||+
T Consensus 122 ~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~-gL-~~rV~F~~~Da~~~~~~-l~~FDl 198 (296)
T PLN03075 122 GVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDP-DL-SKRMFFHTADVMDVTES-LKEYDV 198 (296)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhcc-Cc-cCCcEEEECchhhcccc-cCCcCE
Confidence 37899999999977443 3 33346778899999999999999999985311 11 47899999999885322 367999
Q ss_pred EEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCCC-CcCCChhHHHHHHHHHhhhcCceeEEEeeccccCC
Q 019699 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPA-GIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSFAD 257 (337)
Q Consensus 179 Ii~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p-~~~~~~~~~~~i~~~l~~vF~~v~~~~~~vP~~~~ 257 (337)
|++++-..+.. -.-.+.++. +.++|+|||++++....- ..+..+.... ..++ -|.. +...-|+-+-
T Consensus 199 VF~~ALi~~dk-----~~k~~vL~~-l~~~LkPGG~Lvlr~~~G~r~~LYp~v~~---~~~~-gf~~---~~~~~P~~~v 265 (296)
T PLN03075 199 VFLAALVGMDK-----EEKVKVIEH-LGKHMAPGALLMLRSAHGARAFLYPVVDP---CDLR-GFEV---LSVFHPTDEV 265 (296)
T ss_pred EEEeccccccc-----ccHHHHHHH-HHHhcCCCcEEEEecccchHhhcCCCCCh---hhCC-CeEE---EEEECCCCCc
Confidence 99996433210 112578888 799999999999986311 0001111000 1122 3332 3333455334
Q ss_pred ceEEEEEecCCC
Q 019699 258 TWGWIMASDSPF 269 (337)
Q Consensus 258 ~~~~~~as~~p~ 269 (337)
.|.++++.|...
T Consensus 266 ~Nsvi~~r~~~~ 277 (296)
T PLN03075 266 INSVIIARKPGG 277 (296)
T ss_pred eeeEEEEEeecC
Confidence 578999998654
No 54
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.15 E-value=4.6e-10 Score=104.23 Aligned_cols=106 Identities=22% Similarity=0.344 Sum_probs=82.9
Q ss_pred CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (337)
Q Consensus 101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi 180 (337)
+.+.+||++|||+|..+..+++. ..+|++||+++++++.|++...... ..++++++.+|..+......++||+|+
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~--g~~v~~vD~s~~~l~~a~~~~~~~g---~~~~v~~~~~d~~~l~~~~~~~fD~V~ 117 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAEL--GHQVILCDLSAEMIQRAKQAAEAKG---VSDNMQFIHCAAQDIAQHLETPVDLIL 117 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcC---CccceEEEEcCHHHHhhhcCCCCCEEE
Confidence 56789999999999999999986 3689999999999999999875431 246899999999876444457899999
Q ss_pred EeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (337)
Q Consensus 181 ~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~ 218 (337)
+...-.....| ..+++. +.+.|+|||++++.
T Consensus 118 ~~~vl~~~~~~------~~~l~~-~~~~LkpgG~l~i~ 148 (255)
T PRK11036 118 FHAVLEWVADP------KSVLQT-LWSVLRPGGALSLM 148 (255)
T ss_pred ehhHHHhhCCH------HHHHHH-HHHHcCCCeEEEEE
Confidence 87542211112 467888 79999999998764
No 55
>PLN02672 methionine S-methyltransferase
Probab=99.13 E-value=2.3e-09 Score=116.18 Aligned_cols=172 Identities=17% Similarity=0.143 Sum_probs=111.8
Q ss_pred ceEEEEcCccccccCChhhHHHHHHhHHHhcCC----CCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHh
Q 019699 69 GKALVIDGKLQSAEVDEFIYHESLVHPALLHHP----NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKS 144 (337)
Q Consensus 69 G~~L~lDG~~q~~~~de~~Y~e~l~~~~l~~~~----~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~ 144 (337)
|..|.++-.+.....+ +|.++.. +-.++ .+++||+||||+|.++..+++..+..+|++|||++++++.|++
T Consensus 86 ~l~~~V~p~VLIPRpe----TE~lve~-L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~ 160 (1082)
T PLN02672 86 KLTMMEIPSIFIPEDW----SFTFYEG-LNRHPDSIFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWI 160 (1082)
T ss_pred CCceeeCCCcccCchh----HHHHHHH-HHhcccccCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHH
Confidence 5556666666666554 4444432 22232 2468999999999999999987766799999999999999999
Q ss_pred hhhhccCC------------CCCCCeEEEEccHHHHHhhcCCceeEEEEeCCC-CCC-----------CC---------C
Q 019699 145 YLVVNKEA------------FSDPRLELVINDARAELESRKESYDVIIGDLAD-PIE-----------GG---------P 191 (337)
Q Consensus 145 ~f~~~~~~------------~~d~rv~v~~~D~~~~l~~~~~~yDvIi~D~~d-p~~-----------~~---------p 191 (337)
+...+... ....|++++.+|..+.+.....+||+|+++++- +.. .. |
T Consensus 161 Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p 240 (1082)
T PLN02672 161 NLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCRDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSN 240 (1082)
T ss_pred HHHHcCcccccccccccccccccccEEEEECchhhhccccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCc
Confidence 98653210 012489999999988875433479999999982 110 01 1
Q ss_pred CcCCch-------HHHHHHH---hccccCCCceEEEeCCCCCcCCChhHHH-HHHHHHhhhcCceeEEEee
Q 019699 192 CYKLYT-------KSFYEFV---VKPRLNPEGIFVTQAGPAGIFSHTEVFS-CIYNTLRQVFKYVVPYSAH 251 (337)
Q Consensus 192 ~~~L~t-------~ef~~~~---~~~~L~p~Gvlv~~~~~p~~~~~~~~~~-~i~~~l~~vF~~v~~~~~~ 251 (337)
...|+. .+||+.+ +.++|+|||.++++.+. .+.+.+. .+.+. .-|..+..|...
T Consensus 241 ~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEiG~----~q~~~v~~~l~~~--~gf~~~~~~~~~ 305 (1082)
T PLN02672 241 YCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNMGG----RPGQAVCERLFER--RGFRITKLWQTK 305 (1082)
T ss_pred cccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEECc----cHHHHHHHHHHHH--CCCCeeEEeeeh
Confidence 122322 2344442 45799999999999862 2333333 23332 237777766543
No 56
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.12 E-value=4.3e-10 Score=104.06 Aligned_cols=107 Identities=17% Similarity=0.292 Sum_probs=80.9
Q ss_pred CCCCeEEEEecchhHHHHHHHh--cCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeE
Q 019699 101 PNPKTIFIMGGGEGSTAREILR--HKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV 178 (337)
Q Consensus 101 ~~p~~VLiIG~G~G~~~~~ll~--~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDv 178 (337)
++..+||+||||+|..+..+++ ..+..++++||+++.+++.|++.+.... ...+++++.+|..+.. ...||+
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~---~~~~v~~~~~d~~~~~---~~~~D~ 128 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYK---APTPVDVIEGDIRDIA---IENASM 128 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcC---CCCCeEEEeCChhhCC---CCCCCE
Confidence 5668999999999999988877 3456899999999999999999876432 1358999999986542 245999
Q ss_pred EEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (337)
Q Consensus 179 Ii~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~ 218 (337)
|++...-... .+ -....+++. +.+.|+|||.+++.
T Consensus 129 vv~~~~l~~l-~~---~~~~~~l~~-i~~~LkpGG~l~l~ 163 (247)
T PRK15451 129 VVLNFTLQFL-EP---SERQALLDK-IYQGLNPGGALVLS 163 (247)
T ss_pred EehhhHHHhC-CH---HHHHHHHHH-HHHhcCCCCEEEEE
Confidence 9887542210 01 112468888 89999999998875
No 57
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.12 E-value=1.7e-09 Score=94.96 Aligned_cols=108 Identities=17% Similarity=0.191 Sum_probs=81.1
Q ss_pred CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (337)
Q Consensus 101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi 180 (337)
.++++||++|||+|.++..+++..+ +|+++|+++++++.+++++..+ ..+++++.+|..+.. .++||+|+
T Consensus 18 ~~~~~vLdlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~-----~~~~~~~~~d~~~~~---~~~fD~Vi 87 (179)
T TIGR00537 18 LKPDDVLEIGAGTGLVAIRLKGKGK--CILTTDINPFAVKELRENAKLN-----NVGLDVVMTDLFKGV---RGKFDVIL 87 (179)
T ss_pred cCCCeEEEeCCChhHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHc-----CCceEEEEccccccc---CCcccEEE
Confidence 4567899999999999999998643 8999999999999999988653 246888999976654 35899999
Q ss_pred EeCCCCCCCCCC---------------cCCchHHHHHHHhccccCCCceEEEeC
Q 019699 181 GDLADPIEGGPC---------------YKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (337)
Q Consensus 181 ~D~~dp~~~~p~---------------~~L~t~ef~~~~~~~~L~p~Gvlv~~~ 219 (337)
++++........ .......|++. +.++|+|||.+++..
T Consensus 88 ~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~Lk~gG~~~~~~ 140 (179)
T TIGR00537 88 FNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDE-LPEILKEGGRVQLIQ 140 (179)
T ss_pred ECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHh-HHHhhCCCCEEEEEE
Confidence 998632110000 00113568888 799999999887754
No 58
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.11 E-value=5.2e-09 Score=97.04 Aligned_cols=161 Identities=16% Similarity=0.154 Sum_probs=100.7
Q ss_pred eEEEEcCccccccCChhhHHHHHHhHHHhcCCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhc
Q 019699 70 KALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVN 149 (337)
Q Consensus 70 ~~L~lDG~~q~~~~de~~Y~e~l~~~~l~~~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~ 149 (337)
..+.+|-.+.+.... +.-+.++.+.-......+++||++|||+|.++..+.+. +..+|+++|+|+.+++.|++++..+
T Consensus 88 ~~i~i~p~~afgtg~-h~tt~~~l~~l~~~~~~~~~VLDiGcGsG~l~i~~~~~-g~~~v~giDis~~~l~~A~~n~~~~ 165 (250)
T PRK00517 88 INIELDPGMAFGTGT-HPTTRLCLEALEKLVLPGKTVLDVGCGSGILAIAAAKL-GAKKVLAVDIDPQAVEAARENAELN 165 (250)
T ss_pred EEEEECCCCccCCCC-CHHHHHHHHHHHhhcCCCCEEEEeCCcHHHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHc
Confidence 456777655443322 12223332211111346789999999999999887775 3457999999999999999988654
Q ss_pred cCCCCCCCeEEEEccHHHHHhhcCCceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChh
Q 019699 150 KEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTE 229 (337)
Q Consensus 150 ~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~ 229 (337)
. . ..++.+..+|. +||+|+++.... . -..+++. +.++|+|||.+++... ...
T Consensus 166 ~--~-~~~~~~~~~~~---------~fD~Vvani~~~-------~--~~~l~~~-~~~~LkpgG~lilsgi------~~~ 217 (250)
T PRK00517 166 G--V-ELNVYLPQGDL---------KADVIVANILAN-------P--LLELAPD-LARLLKPGGRLILSGI------LEE 217 (250)
T ss_pred C--C-CceEEEccCCC---------CcCEEEEcCcHH-------H--HHHHHHH-HHHhcCCCcEEEEEEC------cHh
Confidence 2 1 23444444432 799999876421 1 1356777 7899999999998642 122
Q ss_pred HHHHHHHHHhhh-cCceeEEEeeccccCCceEEEEEec
Q 019699 230 VFSCIYNTLRQV-FKYVVPYSAHIPSFADTWGWIMASD 266 (337)
Q Consensus 230 ~~~~i~~~l~~v-F~~v~~~~~~vP~~~~~~~~~~as~ 266 (337)
....+.+.+++. |....... .+.|..+++.|
T Consensus 218 ~~~~v~~~l~~~Gf~~~~~~~------~~~W~~~~~~~ 249 (250)
T PRK00517 218 QADEVLEAYEEAGFTLDEVLE------RGEWVALVGKK 249 (250)
T ss_pred hHHHHHHHHHHCCCEEEEEEE------eCCEEEEEEEe
Confidence 344566667665 54433222 24587776654
No 59
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.11 E-value=8.7e-10 Score=116.27 Aligned_cols=116 Identities=16% Similarity=0.188 Sum_probs=88.6
Q ss_pred CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (337)
Q Consensus 101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi 180 (337)
.++++||++|+|+|+++..+++. +..+|++||+++..++.|++++..++ ++..+++++.+|+.+|++...++||+||
T Consensus 537 ~~g~rVLDlf~gtG~~sl~aa~~-Ga~~V~~vD~s~~al~~a~~N~~~ng--~~~~~v~~i~~D~~~~l~~~~~~fDlIi 613 (702)
T PRK11783 537 AKGKDFLNLFAYTGTASVHAALG-GAKSTTTVDMSNTYLEWAERNFALNG--LSGRQHRLIQADCLAWLKEAREQFDLIF 613 (702)
T ss_pred cCCCeEEEcCCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhC--CCccceEEEEccHHHHHHHcCCCcCEEE
Confidence 35789999999999999999986 46689999999999999999997763 3335899999999999976667899999
Q ss_pred EeCCCCCCCCCCcCCc-----hHHHHHHHhccccCCCceEEEeCC
Q 019699 181 GDLADPIEGGPCYKLY-----TKSFYEFVVKPRLNPEGIFVTQAG 220 (337)
Q Consensus 181 ~D~~dp~~~~p~~~L~-----t~ef~~~~~~~~L~p~Gvlv~~~~ 220 (337)
+|++.-.........+ -.+.++. +.++|+|||++++.+.
T Consensus 614 lDPP~f~~~~~~~~~~~~~~~y~~l~~~-a~~lL~~gG~l~~~~~ 657 (702)
T PRK11783 614 IDPPTFSNSKRMEDSFDVQRDHVALIKD-AKRLLRPGGTLYFSNN 657 (702)
T ss_pred ECCCCCCCCCccchhhhHHHHHHHHHHH-HHHHcCCCCEEEEEeC
Confidence 9987321100000111 1345565 5789999999987654
No 60
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.10 E-value=5.2e-09 Score=93.96 Aligned_cols=146 Identities=14% Similarity=0.095 Sum_probs=95.5
Q ss_pred eEEEEEeCCCceEEEEcCccccccCChhhHHHHHHhHHHhcCCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHH
Q 019699 59 DIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEV 138 (337)
Q Consensus 59 ~I~V~~~~~~G~~L~lDG~~q~~~~de~~Y~e~l~~~~l~~~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~v 138 (337)
.+.|+.....|+-|..-.........+..+..++..+ ....+..+||++|+|+|.++.+++... ..+|++||+|+..
T Consensus 12 ~mrIi~g~~~g~~l~~~~~~~~Rp~~d~v~e~l~~~l--~~~~~~~~vLDl~~GsG~l~l~~lsr~-a~~V~~vE~~~~a 88 (199)
T PRK10909 12 QIRIIGGQWRGRKLPVPDSPGLRPTTDRVRETLFNWL--APVIVDARCLDCFAGSGALGLEALSRY-AAGATLLEMDRAV 88 (199)
T ss_pred CEEEEeeccCCCEeCCCCCCCcCcCCHHHHHHHHHHH--hhhcCCCEEEEcCCCccHHHHHHHHcC-CCEEEEEECCHHH
Confidence 3667666656776654111101101112222222221 111345799999999999999876654 5799999999999
Q ss_pred HHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEEEeCCCCCCCCCCcCCchHHHHHHHhc--cccCCCceEE
Q 019699 139 VEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVK--PRLNPEGIFV 216 (337)
Q Consensus 139 i~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~--~~L~p~Gvlv 216 (337)
++.+++++..+. -.+++++.+|+.+++....+.||+|++|++... + + ..+.++. +. ..|+|+|+++
T Consensus 89 ~~~a~~Nl~~~~----~~~v~~~~~D~~~~l~~~~~~fDlV~~DPPy~~--g----~-~~~~l~~-l~~~~~l~~~~iv~ 156 (199)
T PRK10909 89 AQQLIKNLATLK----AGNARVVNTNALSFLAQPGTPHNVVFVDPPFRK--G----L-LEETINL-LEDNGWLADEALIY 156 (199)
T ss_pred HHHHHHHHHHhC----CCcEEEEEchHHHHHhhcCCCceEEEECCCCCC--C----h-HHHHHHH-HHHCCCcCCCcEEE
Confidence 999999987653 137999999999988654457999999997321 2 1 2233343 33 4589999998
Q ss_pred EeC
Q 019699 217 TQA 219 (337)
Q Consensus 217 ~~~ 219 (337)
+..
T Consensus 157 ve~ 159 (199)
T PRK10909 157 VES 159 (199)
T ss_pred EEe
Confidence 875
No 61
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.09 E-value=2e-09 Score=98.05 Aligned_cols=107 Identities=13% Similarity=0.064 Sum_probs=82.2
Q ss_pred CCCCeEEEEecchhHHHHHHHhcC-CCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEE
Q 019699 101 PNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (337)
Q Consensus 101 ~~p~~VLiIG~G~G~~~~~ll~~~-~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvI 179 (337)
.+..+||+||||+|.++..++++. +..+|+++|+++.+++.|++.+... .-++++++.+|+.++. -..++||+|
T Consensus 44 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~----~~~~v~~~~~d~~~~~-~~~~~fD~V 118 (231)
T TIGR02752 44 QAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDA----GLHNVELVHGNAMELP-FDDNSFDYV 118 (231)
T ss_pred CCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhc----CCCceEEEEechhcCC-CCCCCccEE
Confidence 456899999999999999998763 5579999999999999999887532 1357999999987642 234789999
Q ss_pred EEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (337)
Q Consensus 180 i~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~ 219 (337)
++...-.. .+ ...++++. +.+.|+|||.+++..
T Consensus 119 ~~~~~l~~--~~----~~~~~l~~-~~~~Lk~gG~l~~~~ 151 (231)
T TIGR02752 119 TIGFGLRN--VP----DYMQVLRE-MYRVVKPGGKVVCLE 151 (231)
T ss_pred EEeccccc--CC----CHHHHHHH-HHHHcCcCeEEEEEE
Confidence 98764322 11 12467887 789999999987653
No 62
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.09 E-value=1.8e-10 Score=89.01 Aligned_cols=95 Identities=21% Similarity=0.227 Sum_probs=73.3
Q ss_pred EEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEEEeCCCC
Q 019699 107 FIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADP 186 (337)
Q Consensus 107 LiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~D~~dp 186 (337)
|+||+|+|..+..++++ +..+++++|+++++++.+++... ..+++++.+|..++ .-.+++||+|++...-.
T Consensus 1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~-------~~~~~~~~~d~~~l-~~~~~sfD~v~~~~~~~ 71 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLK-------NEGVSFRQGDAEDL-PFPDNSFDVVFSNSVLH 71 (95)
T ss_dssp EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTT-------TSTEEEEESBTTSS-SS-TT-EEEEEEESHGG
T ss_pred CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhccc-------ccCchheeehHHhC-cccccccccccccccee
Confidence 89999999999999998 57899999999999999999764 24566999997765 33468999999886532
Q ss_pred CCCCCCcCCchHHHHHHHhccccCCCceEEE
Q 019699 187 IEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT 217 (337)
Q Consensus 187 ~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~ 217 (337)
+. ---..++++ ++|.|+|||.+++
T Consensus 72 ~~------~~~~~~l~e-~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 72 HL------EDPEAALRE-IYRVLKPGGRLVI 95 (95)
T ss_dssp GS------SHHHHHHHH-HHHHEEEEEEEEE
T ss_pred ec------cCHHHHHHH-HHHHcCcCeEEeC
Confidence 20 123578888 8999999999875
No 63
>PRK14967 putative methyltransferase; Provisional
Probab=99.09 E-value=4.1e-09 Score=95.95 Aligned_cols=109 Identities=15% Similarity=0.200 Sum_probs=80.3
Q ss_pred CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (337)
Q Consensus 101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi 180 (337)
.+..+||++|||+|.++..+++. +..+|+++|+|+.+++.+++++...+ .+++++.+|..+++. .++||+|+
T Consensus 35 ~~~~~vLDlGcG~G~~~~~la~~-~~~~v~~vD~s~~~l~~a~~n~~~~~-----~~~~~~~~d~~~~~~--~~~fD~Vi 106 (223)
T PRK14967 35 GPGRRVLDLCTGSGALAVAAAAA-GAGSVTAVDISRRAVRSARLNALLAG-----VDVDVRRGDWARAVE--FRPFDVVV 106 (223)
T ss_pred CCCCeEEEecCCHHHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHhC-----CeeEEEECchhhhcc--CCCeeEEE
Confidence 34579999999999999998886 34599999999999999999876432 358899999877653 36899999
Q ss_pred EeCCCCCCC-------CCCc--------CCchHHHHHHHhccccCCCceEEEe
Q 019699 181 GDLADPIEG-------GPCY--------KLYTKSFYEFVVKPRLNPEGIFVTQ 218 (337)
Q Consensus 181 ~D~~dp~~~-------~p~~--------~L~t~ef~~~~~~~~L~p~Gvlv~~ 218 (337)
+|++..... ++.. ...-..|++. +.+.|++||.+++-
T Consensus 107 ~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-a~~~Lk~gG~l~~~ 158 (223)
T PRK14967 107 SNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDA-APALLAPGGSLLLV 158 (223)
T ss_pred ECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHH-HHHhcCCCcEEEEE
Confidence 997522100 0000 0012457777 78999999998864
No 64
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=99.06 E-value=2.4e-09 Score=98.99 Aligned_cols=145 Identities=19% Similarity=0.233 Sum_probs=100.4
Q ss_pred hhhHHHHHHhHH-HhcCCCCCeEEEEecchhHHHHHHHhc-CCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEE
Q 019699 85 EFIYHESLVHPA-LLHHPNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI 162 (337)
Q Consensus 85 e~~Y~e~l~~~~-l~~~~~p~~VLiIG~G~G~~~~~ll~~-~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~ 162 (337)
.-+|..-+..+. .+-..+..+||+.|.|+|+++..+++. .+..+|...|+.++-.+.|+++|.... -+.++++++
T Consensus 22 QIiYpkD~~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~g---l~~~v~~~~ 98 (247)
T PF08704_consen 22 QIIYPKDISYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHG---LDDNVTVHH 98 (247)
T ss_dssp ----HHHHHHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTT---CCTTEEEEE
T ss_pred ceeeCchHHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcC---CCCCceeEe
Confidence 345655443332 333467789999999999999999874 456799999999999999999997653 246899999
Q ss_pred ccHHH--HHhhcCCceeEEEEeCCCCCCCCCCcCCchHHHHHHHhcccc-CCCceEEEeCCCCCcCCChhHHHHHHHHHh
Q 019699 163 NDARA--ELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRL-NPEGIFVTQAGPAGIFSHTEVFSCIYNTLR 239 (337)
Q Consensus 163 ~D~~~--~l~~~~~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L-~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~ 239 (337)
.|..+ |-......+|.||+|.++||. .... +.++| ++||.+++.+ | ..++....+..|+
T Consensus 99 ~Dv~~~g~~~~~~~~~DavfLDlp~Pw~-----------~i~~-~~~~L~~~gG~i~~fs--P----~ieQv~~~~~~L~ 160 (247)
T PF08704_consen 99 RDVCEEGFDEELESDFDAVFLDLPDPWE-----------AIPH-AKRALKKPGGRICCFS--P----CIEQVQKTVEALR 160 (247)
T ss_dssp S-GGCG--STT-TTSEEEEEEESSSGGG-----------GHHH-HHHHE-EEEEEEEEEE--S----SHHHHHHHHHHHH
T ss_pred cceecccccccccCcccEEEEeCCCHHH-----------HHHH-HHHHHhcCCceEEEEC--C----CHHHHHHHHHHHH
Confidence 99853 422334789999999999983 2344 67899 8999999874 3 3567777788888
Q ss_pred hh-cCceeEEEe
Q 019699 240 QV-FKYVVPYSA 250 (337)
Q Consensus 240 ~v-F~~v~~~~~ 250 (337)
+. |.++..+.+
T Consensus 161 ~~gf~~i~~~Ev 172 (247)
T PF08704_consen 161 EHGFTDIETVEV 172 (247)
T ss_dssp HTTEEEEEEEEE
T ss_pred HCCCeeeEEEEE
Confidence 74 777655543
No 65
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.06 E-value=1.2e-09 Score=99.00 Aligned_cols=103 Identities=22% Similarity=0.212 Sum_probs=79.3
Q ss_pred CCCCCeEEEEecchhHHHHHHHhcCC-CcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeE
Q 019699 100 HPNPKTIFIMGGGEGSTAREILRHKT-VEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV 178 (337)
Q Consensus 100 ~~~p~~VLiIG~G~G~~~~~ll~~~~-~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDv 178 (337)
..+..+||+||||+|..+..+++..+ ..+|++||+++++++.|++++.... -++++++.+|+.+.+.. ...||+
T Consensus 75 ~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g----~~~v~~~~~d~~~~~~~-~~~fD~ 149 (215)
T TIGR00080 75 LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLG----LDNVIVIVGDGTQGWEP-LAPYDR 149 (215)
T ss_pred CCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCC----CCCeEEEECCcccCCcc-cCCCCE
Confidence 35668999999999999998887643 3579999999999999999886542 25799999999765432 368999
Q ss_pred EEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCC
Q 019699 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG 220 (337)
Q Consensus 179 Ii~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~ 220 (337)
|+++...+. .| +. +.+.|+|||.+++..+
T Consensus 150 Ii~~~~~~~--~~----------~~-~~~~L~~gG~lv~~~~ 178 (215)
T TIGR00080 150 IYVTAAGPK--IP----------EA-LIDQLKEGGILVMPVG 178 (215)
T ss_pred EEEcCCccc--cc----------HH-HHHhcCcCcEEEEEEc
Confidence 999865322 11 23 4678999999988653
No 66
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.05 E-value=3.8e-09 Score=97.03 Aligned_cols=108 Identities=19% Similarity=0.200 Sum_probs=84.4
Q ss_pred CCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEE
Q 019699 100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (337)
Q Consensus 100 ~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvI 179 (337)
+.++.+||+||||+|-++..+.+..+..+|+++|+++.|++.|++...... ...++++.+||.+ |.-.+++||+|
T Consensus 49 ~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~----~~~i~fv~~dAe~-LPf~D~sFD~v 123 (238)
T COG2226 49 IKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKG----VQNVEFVVGDAEN-LPFPDNSFDAV 123 (238)
T ss_pred CCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccC----ccceEEEEechhh-CCCCCCccCEE
Confidence 347899999999999999999998777899999999999999999875321 1229999999865 45557899999
Q ss_pred EEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (337)
Q Consensus 180 i~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~ 219 (337)
.+...-.+-.. -...+++ +.|+|+|||.+++.-
T Consensus 124 t~~fglrnv~d------~~~aL~E-~~RVlKpgG~~~vle 156 (238)
T COG2226 124 TISFGLRNVTD------IDKALKE-MYRVLKPGGRLLVLE 156 (238)
T ss_pred EeeehhhcCCC------HHHHHHH-HHHhhcCCeEEEEEE
Confidence 98865222111 2457788 789999999877653
No 67
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=1.8e-09 Score=96.78 Aligned_cols=103 Identities=25% Similarity=0.294 Sum_probs=82.9
Q ss_pred hcCCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCcee
Q 019699 98 LHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYD 177 (337)
Q Consensus 98 ~~~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yD 177 (337)
+...+..+||+||+|+|..+.-+++. +.+|+.||++++..+.|++++.... -.++.++++||..-... ...||
T Consensus 68 L~~~~g~~VLEIGtGsGY~aAvla~l--~~~V~siEr~~~L~~~A~~~L~~lg----~~nV~v~~gDG~~G~~~-~aPyD 140 (209)
T COG2518 68 LELKPGDRVLEIGTGSGYQAAVLARL--VGRVVSIERIEELAEQARRNLETLG----YENVTVRHGDGSKGWPE-EAPYD 140 (209)
T ss_pred hCCCCCCeEEEECCCchHHHHHHHHH--hCeEEEEEEcHHHHHHHHHHHHHcC----CCceEEEECCcccCCCC-CCCcC
Confidence 33456789999999999999888876 3599999999999999999987542 34599999999877654 36799
Q ss_pred EEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCC
Q 019699 178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG 220 (337)
Q Consensus 178 vIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~ 220 (337)
.|++.+.-+. -|. . +.+.|++||++++-.+
T Consensus 141 ~I~Vtaaa~~--vP~----------~-Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 141 RIIVTAAAPE--VPE----------A-LLDQLKPGGRLVIPVG 170 (209)
T ss_pred EEEEeeccCC--CCH----------H-HHHhcccCCEEEEEEc
Confidence 9999987654 341 1 4568999999999876
No 68
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.04 E-value=6e-10 Score=88.58 Aligned_cols=96 Identities=24% Similarity=0.428 Sum_probs=70.5
Q ss_pred EEEEecchhHHHHHHHhcC---CCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEEEe
Q 019699 106 IFIMGGGEGSTAREILRHK---TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGD 182 (337)
Q Consensus 106 VLiIG~G~G~~~~~ll~~~---~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~D 182 (337)
||++|||+|..++.+++.. +..++++||+|+++++.+++.+... .++++++.+|+.++ ....++||+|++-
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~-----~~~~~~~~~D~~~l-~~~~~~~D~v~~~ 74 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSED-----GPKVRFVQADARDL-PFSDGKFDLVVCS 74 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHT-----TTTSEEEESCTTCH-HHHSSSEEEEEE-
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhc-----CCceEEEECCHhHC-cccCCCeeEEEEc
Confidence 7999999999999999864 2379999999999999999987542 35899999999874 4456799999993
Q ss_pred -C-CCCCCCCCCcCCchHHHHHHHhccccCCCc
Q 019699 183 -L-ADPIEGGPCYKLYTKSFYEFVVKPRLNPEG 213 (337)
Q Consensus 183 -~-~dp~~~~p~~~L~t~ef~~~~~~~~L~p~G 213 (337)
. .... .+ ---..+++. +.++|+|||
T Consensus 75 ~~~~~~~--~~---~~~~~ll~~-~~~~l~pgG 101 (101)
T PF13649_consen 75 GLSLHHL--SP---EELEALLRR-IARLLRPGG 101 (101)
T ss_dssp TTGGGGS--SH---HHHHHHHHH-HHHTEEEEE
T ss_pred CCccCCC--CH---HHHHHHHHH-HHHHhCCCC
Confidence 3 1111 10 012568888 789999998
No 69
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.04 E-value=6.2e-09 Score=104.32 Aligned_cols=116 Identities=23% Similarity=0.204 Sum_probs=85.4
Q ss_pred CCCCCeEEEEecchhHHHHHHHhcC-CCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeE
Q 019699 100 HPNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV 178 (337)
Q Consensus 100 ~~~p~~VLiIG~G~G~~~~~ll~~~-~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDv 178 (337)
..+..+||++|+|.|+.+..++++. +..+|+++|+++..++.+++++...+ . .+++++.+|+.++.....++||+
T Consensus 248 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g--~--~~v~~~~~D~~~~~~~~~~~fD~ 323 (444)
T PRK14902 248 PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLG--L--TNIETKALDARKVHEKFAEKFDK 323 (444)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcC--C--CeEEEEeCCcccccchhcccCCE
Confidence 3456799999999999999988863 45799999999999999999886432 2 34999999998765433468999
Q ss_pred EEEeCCCCCCC----CCCcC-------C-----chHHHHHHHhccccCCCceEEEeCC
Q 019699 179 IIGDLADPIEG----GPCYK-------L-----YTKSFYEFVVKPRLNPEGIFVTQAG 220 (337)
Q Consensus 179 Ii~D~~dp~~~----~p~~~-------L-----~t~ef~~~~~~~~L~p~Gvlv~~~~ 220 (337)
|++|++-...+ .|... + ...++++. +.+.|+|||.++..+.
T Consensus 324 Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~-a~~~LkpGG~lvystc 380 (444)
T PRK14902 324 ILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILES-VAQYLKKGGILVYSTC 380 (444)
T ss_pred EEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHH-HHHHcCCCCEEEEEcC
Confidence 99998621100 11100 0 12467887 7899999999987653
No 70
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.04 E-value=8.4e-10 Score=101.44 Aligned_cols=107 Identities=21% Similarity=0.220 Sum_probs=72.3
Q ss_pred CCCCCeEEEEecchhHHHHHHHhcC-CCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeE
Q 019699 100 HPNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV 178 (337)
Q Consensus 100 ~~~p~~VLiIG~G~G~~~~~ll~~~-~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDv 178 (337)
..++.+|||+|||+|.++..++++. +..+|+++|+++.|++.|++...... ..+++++.+|+.+. .-.+++||+
T Consensus 45 ~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~----~~~i~~v~~da~~l-p~~d~sfD~ 119 (233)
T PF01209_consen 45 LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREG----LQNIEFVQGDAEDL-PFPDNSFDA 119 (233)
T ss_dssp --S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT------SEEEEE-BTTB---S-TT-EEE
T ss_pred CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhC----CCCeeEEEcCHHHh-cCCCCceeE
Confidence 3567899999999999999999873 45799999999999999999876432 24899999998763 334589999
Q ss_pred EEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (337)
Q Consensus 179 Ii~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~ 218 (337)
|++-..-.. -+ --...+++ +.|+|+|||.+++-
T Consensus 120 v~~~fglrn--~~----d~~~~l~E-~~RVLkPGG~l~il 152 (233)
T PF01209_consen 120 VTCSFGLRN--FP----DRERALRE-MYRVLKPGGRLVIL 152 (233)
T ss_dssp EEEES-GGG---S----SHHHHHHH-HHHHEEEEEEEEEE
T ss_pred EEHHhhHHh--hC----CHHHHHHH-HHHHcCCCeEEEEe
Confidence 998763211 11 12457888 79999999987754
No 71
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.04 E-value=1.7e-09 Score=101.08 Aligned_cols=109 Identities=14% Similarity=0.016 Sum_probs=80.6
Q ss_pred CCCCeEEEEecchhHHHHHHHhcC-CCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEE
Q 019699 101 PNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (337)
Q Consensus 101 ~~p~~VLiIG~G~G~~~~~ll~~~-~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvI 179 (337)
+++.+||+||||+|.++..++++. +..+|++||+++++++.|++....... ...++++++.+|+.+. .-.+++||+|
T Consensus 72 ~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~-~~~~~i~~~~~d~~~l-p~~~~sfD~V 149 (261)
T PLN02233 72 KMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAK-SCYKNIEWIEGDATDL-PFDDCYFDAI 149 (261)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhh-ccCCCeEEEEcccccC-CCCCCCEeEE
Confidence 456899999999999999888763 446999999999999999876542110 1235899999998653 2234689999
Q ss_pred EEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (337)
Q Consensus 180 i~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~ 218 (337)
++...-.. .+ -...++++ +.++|+|||.+++-
T Consensus 150 ~~~~~l~~--~~----d~~~~l~e-i~rvLkpGG~l~i~ 181 (261)
T PLN02233 150 TMGYGLRN--VV----DRLKAMQE-MYRVLKPGSRVSIL 181 (261)
T ss_pred EEeccccc--CC----CHHHHHHH-HHHHcCcCcEEEEE
Confidence 98654222 11 12578898 89999999988664
No 72
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.04 E-value=1e-08 Score=97.07 Aligned_cols=122 Identities=21% Similarity=0.257 Sum_probs=87.9
Q ss_pred CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (337)
Q Consensus 101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi 180 (337)
...++||++|||+|.++..+++. +..+|++||+|+.+++.|++++..+. -..++.+..+|.... ..++||+|+
T Consensus 158 ~~g~~VLDvGcGsG~lai~aa~~-g~~~V~avDid~~al~~a~~n~~~n~---~~~~~~~~~~~~~~~---~~~~fDlVv 230 (288)
T TIGR00406 158 LKDKNVIDVGCGSGILSIAALKL-GAAKVVGIDIDPLAVESARKNAELNQ---VSDRLQVKLIYLEQP---IEGKADVIV 230 (288)
T ss_pred CCCCEEEEeCCChhHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHcC---CCcceEEEecccccc---cCCCceEEE
Confidence 45689999999999999888876 45799999999999999999987543 134677777763222 246899999
Q ss_pred EeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhhcCce
Q 019699 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYV 245 (337)
Q Consensus 181 ~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~vF~~v 245 (337)
++.... . -.+++.. +.+.|+|||.+++..- .......+.+.+++.|..+
T Consensus 231 an~~~~-------~--l~~ll~~-~~~~LkpgG~li~sgi------~~~~~~~v~~~~~~~f~~~ 279 (288)
T TIGR00406 231 ANILAE-------V--IKELYPQ-FSRLVKPGGWLILSGI------LETQAQSVCDAYEQGFTVV 279 (288)
T ss_pred EecCHH-------H--HHHHHHH-HHHHcCCCcEEEEEeC------cHhHHHHHHHHHHccCcee
Confidence 986411 1 1467787 7899999999987531 1233456666666656543
No 73
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.03 E-value=1.7e-09 Score=97.31 Aligned_cols=102 Identities=20% Similarity=0.224 Sum_probs=77.7
Q ss_pred CCCCeEEEEecchhHHHHHHHhcC-CCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEE
Q 019699 101 PNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (337)
Q Consensus 101 ~~p~~VLiIG~G~G~~~~~ll~~~-~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvI 179 (337)
.+..+||+||||+|..+..+++.. ...+|+++|+++++++.|++++.... + ..+++++.+|+.+.+.. ..+||+|
T Consensus 71 ~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~--~-~~~v~~~~~d~~~~~~~-~~~fD~I 146 (205)
T PRK13944 71 RPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLG--Y-WGVVEVYHGDGKRGLEK-HAPFDAI 146 (205)
T ss_pred CCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcC--C-CCcEEEEECCcccCCcc-CCCccEE
Confidence 345799999999999998887753 24689999999999999999886432 1 24799999999876543 3689999
Q ss_pred EEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (337)
Q Consensus 180 i~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~ 219 (337)
+++...+. + .+. +.+.|+|||.+++..
T Consensus 147 i~~~~~~~-------~-----~~~-l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 147 IVTAAAST-------I-----PSA-LVRQLKDGGVLVIPV 173 (205)
T ss_pred EEccCcch-------h-----hHH-HHHhcCcCcEEEEEE
Confidence 99975321 1 123 467899999998864
No 74
>PLN02244 tocopherol O-methyltransferase
Probab=99.03 E-value=1.4e-09 Score=105.45 Aligned_cols=106 Identities=15% Similarity=0.197 Sum_probs=81.5
Q ss_pred CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (337)
Q Consensus 101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi 180 (337)
.++.+||+||||+|.++..+++.. ..+|++||+++.+++.|++...... ..++++++.+|+.+. .-..++||+|+
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~-g~~v~gvD~s~~~i~~a~~~~~~~g---~~~~v~~~~~D~~~~-~~~~~~FD~V~ 191 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY-GANVKGITLSPVQAARANALAAAQG---LSDKVSFQVADALNQ-PFEDGQFDLVW 191 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhcC---CCCceEEEEcCcccC-CCCCCCccEEE
Confidence 456899999999999999999865 4699999999999999998764321 135799999998663 22357899999
Q ss_pred EeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (337)
Q Consensus 181 ~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~ 218 (337)
+...... .+ -...+++. +.++|+|||.+++.
T Consensus 192 s~~~~~h--~~----d~~~~l~e-~~rvLkpGG~lvi~ 222 (340)
T PLN02244 192 SMESGEH--MP----DKRKFVQE-LARVAAPGGRIIIV 222 (340)
T ss_pred ECCchhc--cC----CHHHHHHH-HHHHcCCCcEEEEE
Confidence 8543211 11 13578898 79999999988874
No 75
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.03 E-value=2.1e-09 Score=97.42 Aligned_cols=103 Identities=19% Similarity=0.298 Sum_probs=81.7
Q ss_pred CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (337)
Q Consensus 101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi 180 (337)
..+++||+||||+|.++..+++..+..+++++|+++.+++.+++.+. ++++++.+|..+.. ...++||+|+
T Consensus 33 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~--------~~~~~~~~d~~~~~-~~~~~fD~vi 103 (240)
T TIGR02072 33 FIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS--------ENVQFICGDAEKLP-LEDSSFDLIV 103 (240)
T ss_pred CCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC--------CCCeEEecchhhCC-CCCCceeEEE
Confidence 45689999999999999999988767789999999999999988653 47889999987643 2346899999
Q ss_pred EeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (337)
Q Consensus 181 ~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~ 219 (337)
+...-.+... ...+++. +++.|+|||.+++..
T Consensus 104 ~~~~l~~~~~------~~~~l~~-~~~~L~~~G~l~~~~ 135 (240)
T TIGR02072 104 SNLALQWCDD------LSQALSE-LARVLKPGGLLAFST 135 (240)
T ss_pred EhhhhhhccC------HHHHHHH-HHHHcCCCcEEEEEe
Confidence 9875333111 2468888 799999999998764
No 76
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.02 E-value=3e-09 Score=97.71 Aligned_cols=108 Identities=19% Similarity=0.280 Sum_probs=81.5
Q ss_pred CCCCeEEEEecchhHHHHHHHhc--CCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeE
Q 019699 101 PNPKTIFIMGGGEGSTAREILRH--KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV 178 (337)
Q Consensus 101 ~~p~~VLiIG~G~G~~~~~ll~~--~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDv 178 (337)
++..+||+||||+|..+..++++ .+..++++||+++.+++.|++.+.... ...+++++.+|..++- ...+|+
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~---~~~~v~~~~~d~~~~~---~~~~d~ 125 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYH---SEIPVEILCNDIRHVE---IKNASM 125 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcC---CCCCeEEEECChhhCC---CCCCCE
Confidence 45679999999999999998875 246899999999999999999875321 2357999999987652 245898
Q ss_pred EEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (337)
Q Consensus 179 Ii~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~ 219 (337)
|++...-+. .+. --...+++. +.++|+|||.+++..
T Consensus 126 v~~~~~l~~--~~~--~~~~~~l~~-i~~~LkpgG~l~i~d 161 (239)
T TIGR00740 126 VILNFTLQF--LPP--EDRIALLTK-IYEGLNPNGVLVLSE 161 (239)
T ss_pred Eeeecchhh--CCH--HHHHHHHHH-HHHhcCCCeEEEEee
Confidence 887654222 110 012578898 899999999988763
No 77
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.01 E-value=2.1e-09 Score=97.30 Aligned_cols=102 Identities=25% Similarity=0.278 Sum_probs=78.2
Q ss_pred CCCCeEEEEecchhHHHHHHHhcC-CCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEE
Q 019699 101 PNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (337)
Q Consensus 101 ~~p~~VLiIG~G~G~~~~~ll~~~-~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvI 179 (337)
.+..+||+||+|+|..+..+++.. +..+|++||+++++++.|++.+.... -.+++++.+|+..... ....||+|
T Consensus 75 ~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g----~~~v~~~~gd~~~~~~-~~~~fD~I 149 (212)
T PRK13942 75 KEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLG----YDNVEVIVGDGTLGYE-ENAPYDRI 149 (212)
T ss_pred CCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcC----CCCeEEEECCcccCCC-cCCCcCEE
Confidence 466899999999999998887763 34699999999999999999886432 2579999999876443 23689999
Q ss_pred EEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCC
Q 019699 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG 220 (337)
Q Consensus 180 i~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~ 220 (337)
+++..-+. .| +. +.+.|+|||.+++..+
T Consensus 150 ~~~~~~~~--~~----------~~-l~~~LkpgG~lvi~~~ 177 (212)
T PRK13942 150 YVTAAGPD--IP----------KP-LIEQLKDGGIMVIPVG 177 (212)
T ss_pred EECCCccc--ch----------HH-HHHhhCCCcEEEEEEc
Confidence 99865321 11 23 4567999999988653
No 78
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.01 E-value=1.2e-09 Score=99.09 Aligned_cols=104 Identities=15% Similarity=0.197 Sum_probs=79.9
Q ss_pred CeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEEEeC
Q 019699 104 KTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDL 183 (337)
Q Consensus 104 ~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~D~ 183 (337)
++||+||||+|..+..++++.+..+++++|+++++++.+++.+.... -+++++++.+|..+.. ..++||+|++..
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~g---l~~~i~~~~~d~~~~~--~~~~fD~I~~~~ 75 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALG---LQGRIRIFYRDSAKDP--FPDTYDLVFGFE 75 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcC---CCcceEEEecccccCC--CCCCCCEeehHH
Confidence 58999999999999999987666799999999999999999875421 2468999999975431 246899999754
Q ss_pred CCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699 184 ADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (337)
Q Consensus 184 ~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~ 219 (337)
.-.. .+ . ...+++. +++.|+|||.+++..
T Consensus 76 ~l~~--~~--~--~~~~l~~-~~~~LkpgG~l~i~~ 104 (224)
T smart00828 76 VIHH--IK--D--KMDLFSN-ISRHLKDGGHLVLAD 104 (224)
T ss_pred HHHh--CC--C--HHHHHHH-HHHHcCCCCEEEEEE
Confidence 3211 01 1 2578998 899999999988753
No 79
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.00 E-value=2.7e-09 Score=95.42 Aligned_cols=104 Identities=13% Similarity=0.101 Sum_probs=78.0
Q ss_pred CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (337)
Q Consensus 101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi 180 (337)
.++.+||++|||.|..+..++++ ..+|+++|+++.+++.+++...... -++++++..|..++- ..++||+|+
T Consensus 29 ~~~~~vLDiGcG~G~~a~~La~~--g~~V~gvD~S~~~i~~a~~~~~~~~----~~~v~~~~~d~~~~~--~~~~fD~I~ 100 (197)
T PRK11207 29 VKPGKTLDLGCGNGRNSLYLAAN--GFDVTAWDKNPMSIANLERIKAAEN----LDNLHTAVVDLNNLT--FDGEYDFIL 100 (197)
T ss_pred CCCCcEEEECCCCCHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHHcC----CCcceEEecChhhCC--cCCCcCEEE
Confidence 35689999999999999999986 3689999999999999998765432 245888999976542 246799999
Q ss_pred EeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEE
Q 019699 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT 217 (337)
Q Consensus 181 ~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~ 217 (337)
+...-... .+ -....+++. ++++|+|||.+++
T Consensus 101 ~~~~~~~~-~~---~~~~~~l~~-i~~~LkpgG~~~~ 132 (197)
T PRK11207 101 STVVLMFL-EA---KTIPGLIAN-MQRCTKPGGYNLI 132 (197)
T ss_pred EecchhhC-CH---HHHHHHHHH-HHHHcCCCcEEEE
Confidence 87542210 11 113578888 8999999998543
No 80
>PRK04266 fibrillarin; Provisional
Probab=99.00 E-value=1.3e-08 Score=93.16 Aligned_cols=132 Identities=15% Similarity=0.151 Sum_probs=88.6
Q ss_pred CCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHH--hhcCCcee
Q 019699 100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAEL--ESRKESYD 177 (337)
Q Consensus 100 ~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l--~~~~~~yD 177 (337)
..+..+||++|||+|.++..+++..+..+|+++|+++.+++.+++.... .+++.++.+|+.... ....++||
T Consensus 70 i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~------~~nv~~i~~D~~~~~~~~~l~~~~D 143 (226)
T PRK04266 70 IKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEE------RKNIIPILADARKPERYAHVVEKVD 143 (226)
T ss_pred CCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhh------cCCcEEEECCCCCcchhhhccccCC
Confidence 3456799999999999999998875456899999999999876655321 257899999986421 11235699
Q ss_pred EEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC--CCCCcC-CChhHHHHHHHHHhhh-cCcee
Q 019699 178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA--GPAGIF-SHTEVFSCIYNTLRQV-FKYVV 246 (337)
Q Consensus 178 vIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~--~~p~~~-~~~~~~~~i~~~l~~v-F~~v~ 246 (337)
+|++|..+|+ . ...+++. +++.|+|||.+++.. .+.... ...+.++...+.+++. |..+.
T Consensus 144 ~i~~d~~~p~--~------~~~~L~~-~~r~LKpGG~lvI~v~~~~~d~~~~~~~~~~~~~~~l~~aGF~~i~ 207 (226)
T PRK04266 144 VIYQDVAQPN--Q------AEIAIDN-AEFFLKDGGYLLLAIKARSIDVTKDPKEIFKEEIRKLEEGGFEILE 207 (226)
T ss_pred EEEECCCChh--H------HHHHHHH-HHHhcCCCcEEEEEEecccccCcCCHHHHHHHHHHHHHHcCCeEEE
Confidence 9999976543 1 1235677 788999999988731 111101 1123344555677765 66544
No 81
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=98.99 E-value=1.6e-09 Score=95.98 Aligned_cols=110 Identities=19% Similarity=0.285 Sum_probs=80.1
Q ss_pred CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhc---CCcee
Q 019699 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR---KESYD 177 (337)
Q Consensus 101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~---~~~yD 177 (337)
-+..+|||+-+|+|.++.|++.+ +..+|+.||.|+..++..++++.... ...+.+++.+|+..++.+. ..+||
T Consensus 41 ~~g~~vLDLFaGSGalGlEALSR-GA~~v~fVE~~~~a~~~i~~N~~~l~---~~~~~~v~~~d~~~~l~~~~~~~~~fD 116 (183)
T PF03602_consen 41 LEGARVLDLFAGSGALGLEALSR-GAKSVVFVEKNRKAIKIIKKNLEKLG---LEDKIRVIKGDAFKFLLKLAKKGEKFD 116 (183)
T ss_dssp HTT-EEEETT-TTSHHHHHHHHT-T-SEEEEEES-HHHHHHHHHHHHHHT----GGGEEEEESSHHHHHHHHHHCTS-EE
T ss_pred cCCCeEEEcCCccCccHHHHHhc-CCCeEEEEECCHHHHHHHHHHHHHhC---CCcceeeeccCHHHHHHhhcccCCCce
Confidence 46789999999999999999997 57899999999999999999987432 1237999999999988654 68999
Q ss_pred EEEEeCCCCCCCCCCcCCchHHHHHHHh-ccccCCCceEEEeCC
Q 019699 178 VIIGDLADPIEGGPCYKLYTKSFYEFVV-KPRLNPEGIFVTQAG 220 (337)
Q Consensus 178 vIi~D~~dp~~~~p~~~L~t~ef~~~~~-~~~L~p~Gvlv~~~~ 220 (337)
+|++|+|-.. .++-.+.++.+. ...|+++|++++...
T Consensus 117 iIflDPPY~~------~~~~~~~l~~l~~~~~l~~~~~ii~E~~ 154 (183)
T PF03602_consen 117 IIFLDPPYAK------GLYYEELLELLAENNLLNEDGLIIIEHS 154 (183)
T ss_dssp EEEE--STTS------CHHHHHHHHHHHHTTSEEEEEEEEEEEE
T ss_pred EEEECCCccc------chHHHHHHHHHHHCCCCCCCEEEEEEec
Confidence 9999986432 121234445411 378999999999863
No 82
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.99 E-value=6.6e-09 Score=92.06 Aligned_cols=127 Identities=20% Similarity=0.261 Sum_probs=84.8
Q ss_pred CCCCeEEEEecchhHHHHHHHhcC-CCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHH-----Hh-h-c
Q 019699 101 PNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE-----LE-S-R 172 (337)
Q Consensus 101 ~~p~~VLiIG~G~G~~~~~ll~~~-~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~-----l~-~-~ 172 (337)
++..+||+||||+|+++..+++.. +..+|+++|+++.. . .++++++.+|..+. +. . .
T Consensus 31 ~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~--------~-------~~~i~~~~~d~~~~~~~~~l~~~~~ 95 (188)
T TIGR00438 31 KPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK--------P-------IENVDFIRGDFTDEEVLNKIRERVG 95 (188)
T ss_pred CCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc--------c-------CCCceEEEeeCCChhHHHHHHHHhC
Confidence 566899999999999998888764 45689999999854 1 14577887786432 11 1 2
Q ss_pred CCceeEEEEeCCCCCCCCCC-cCCc----hHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhhcCceeE
Q 019699 173 KESYDVIIGDLADPIEGGPC-YKLY----TKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVP 247 (337)
Q Consensus 173 ~~~yDvIi~D~~dp~~~~p~-~~L~----t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~vF~~v~~ 247 (337)
.++||+|++|.+.+....+. .++. ...+++. +.+.|+|||.+++... ..+.+..++..++..|..+..
T Consensus 96 ~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~-~~~~LkpgG~lvi~~~------~~~~~~~~l~~l~~~~~~~~~ 168 (188)
T TIGR00438 96 DDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDI-AKEVLKPKGNFVVKVF------QGEEIDEYLNELRKLFEKVKV 168 (188)
T ss_pred CCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHH-HHHHccCCCEEEEEEc------cCccHHHHHHHHHhhhceEEE
Confidence 46799999987522110110 1111 1467887 7899999999998642 223345677888878876655
Q ss_pred EE
Q 019699 248 YS 249 (337)
Q Consensus 248 ~~ 249 (337)
+.
T Consensus 169 ~~ 170 (188)
T TIGR00438 169 TK 170 (188)
T ss_pred eC
Confidence 43
No 83
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.98 E-value=4.8e-09 Score=93.87 Aligned_cols=126 Identities=18% Similarity=0.198 Sum_probs=96.3
Q ss_pred eEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhc--CCceeEEEEe
Q 019699 105 TIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR--KESYDVIIGD 182 (337)
Q Consensus 105 ~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~--~~~yDvIi~D 182 (337)
-+|+||||.|..+.++++..|...+.+||+....+..+.+..... .-+++.++.+||..++... +++.|-|.+.
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~----~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~ 95 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKR----GLKNVRFLRGDARELLRRLFPPGSVDRIYIN 95 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHH----TTSSEEEEES-CTTHHHHHSTTTSEEEEEEE
T ss_pred eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhh----cccceEEEEccHHHHHhhcccCCchheEEEe
Confidence 789999999999999999888899999999999998887776543 2479999999999988653 4799999999
Q ss_pred CCCCCCCCC--CcCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhh
Q 019699 183 LADPIEGGP--CYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV 241 (337)
Q Consensus 183 ~~dp~~~~p--~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~v 241 (337)
-+|||-... -..|.+.+|++. +.++|+|||.+.+.+. ..+.+..+.+.+.+.
T Consensus 96 FPDPWpK~rH~krRl~~~~fl~~-~~~~L~~gG~l~~~TD------~~~y~~~~~~~~~~~ 149 (195)
T PF02390_consen 96 FPDPWPKKRHHKRRLVNPEFLEL-LARVLKPGGELYFATD------VEEYAEWMLEQFEES 149 (195)
T ss_dssp S-----SGGGGGGSTTSHHHHHH-HHHHEEEEEEEEEEES-------HHHHHHHHHHHHHH
T ss_pred CCCCCcccchhhhhcCCchHHHH-HHHHcCCCCEEEEEeC------CHHHHHHHHHHHHhc
Confidence 999983211 136899999998 8999999999988753 456677777777764
No 84
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=98.98 E-value=5.5e-09 Score=98.52 Aligned_cols=124 Identities=16% Similarity=0.206 Sum_probs=85.1
Q ss_pred CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhh--cCCceeE
Q 019699 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES--RKESYDV 178 (337)
Q Consensus 101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~--~~~~yDv 178 (337)
.+.++||++-+=+|+++..+++ .+..+|+.||++...++.+++++..++ ++..+++++.+|+++|+++ ..++||+
T Consensus 122 ~~gkrvLnlFsYTGgfsv~Aa~-gGA~~v~~VD~S~~al~~a~~N~~lNg--~~~~~~~~~~~Dvf~~l~~~~~~~~fD~ 198 (286)
T PF10672_consen 122 AKGKRVLNLFSYTGGFSVAAAA-GGAKEVVSVDSSKRALEWAKENAALNG--LDLDRHRFIQGDVFKFLKRLKKGGRFDL 198 (286)
T ss_dssp CTTCEEEEET-TTTHHHHHHHH-TTESEEEEEES-HHHHHHHHHHHHHTT---CCTCEEEEES-HHHHHHHHHHTT-EEE
T ss_pred cCCCceEEecCCCCHHHHHHHH-CCCCEEEEEeCCHHHHHHHHHHHHHcC--CCccceEEEecCHHHHHHHHhcCCCCCE
Confidence 4578999999999999998887 457799999999999999999998874 4457899999999999875 3579999
Q ss_pred EEEeCCCCCCCCCCcCCchHH---HHHHHhccccCCCceEEEeCCCCCcCCChhHHHH
Q 019699 179 IIGDLADPIEGGPCYKLYTKS---FYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSC 233 (337)
Q Consensus 179 Ii~D~~dp~~~~p~~~L~t~e---f~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~ 233 (337)
||+|+|.-.. +. ..+ .+. ..+. +.+.|+|||++++-+.++. ...+.+.+
T Consensus 199 IIlDPPsF~k-~~-~~~-~~~y~~L~~~-a~~ll~~gG~l~~~scs~~--i~~~~l~~ 250 (286)
T PF10672_consen 199 IILDPPSFAK-SK-FDL-ERDYKKLLRR-AMKLLKPGGLLLTCSCSHH--ISPDFLLE 250 (286)
T ss_dssp EEE--SSEES-ST-CEH-HHHHHHHHHH-HHHTEEEEEEEEEEE--TT--S-HHHHHH
T ss_pred EEECCCCCCC-CH-HHH-HHHHHHHHHH-HHHhcCCCCEEEEEcCCcc--cCHHHHHH
Confidence 9999984221 11 111 222 3444 4689999999887665552 34444433
No 85
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.97 E-value=4.4e-08 Score=91.64 Aligned_cols=135 Identities=15% Similarity=0.135 Sum_probs=94.1
Q ss_pred CCCCeEEEEecchhHHHHHHHhcC-CCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEE
Q 019699 101 PNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (337)
Q Consensus 101 ~~p~~VLiIG~G~G~~~~~ll~~~-~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvI 179 (337)
.++.+||++|+|.|+.+..+++.. +...|+++|+++..++.+++++.... -.+++++..|+..+.. ..+.||+|
T Consensus 70 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g----~~~v~~~~~D~~~~~~-~~~~fD~V 144 (264)
T TIGR00446 70 DPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCG----VLNVAVTNFDGRVFGA-AVPKFDAI 144 (264)
T ss_pred CCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcC----CCcEEEecCCHHHhhh-hccCCCEE
Confidence 445789999999999998887753 23589999999999999999986542 2469999999987643 23569999
Q ss_pred EEeCCCCCC----CCCCc-------CC-----chHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhhcC
Q 019699 180 IGDLADPIE----GGPCY-------KL-----YTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFK 243 (337)
Q Consensus 180 i~D~~dp~~----~~p~~-------~L-----~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~vF~ 243 (337)
++|++-... ..|.. .+ ...++++. +.+.|+|||+++..+.+ ..++.-..+++.+.+.++
T Consensus 145 l~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~-a~~~lkpgG~lvYstcs----~~~~Ene~vv~~~l~~~~ 219 (264)
T TIGR00446 145 LLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDS-AFDALKPGGVLVYSTCS----LEPEENEAVVDYLLEKRP 219 (264)
T ss_pred EEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHH-HHHhcCCCCEEEEEeCC----CChHHHHHHHHHHHHhCC
Confidence 999872211 01110 00 23457777 68899999999866533 234444556666666666
Q ss_pred ce
Q 019699 244 YV 245 (337)
Q Consensus 244 ~v 245 (337)
..
T Consensus 220 ~~ 221 (264)
T TIGR00446 220 DV 221 (264)
T ss_pred Cc
Confidence 53
No 86
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=98.97 E-value=3.1e-09 Score=102.11 Aligned_cols=104 Identities=13% Similarity=0.183 Sum_probs=80.0
Q ss_pred CCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEEE
Q 019699 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG 181 (337)
Q Consensus 102 ~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~ 181 (337)
+..+||+||||+|..+..+++. ..+|++||+++++++.|+++..... ...+++++.+|+.++- ...++||+|++
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~--g~~V~GID~s~~~i~~Ar~~~~~~~---~~~~i~~~~~dae~l~-~~~~~FD~Vi~ 204 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARM--GATVTGVDAVDKNVKIARLHADMDP---VTSTIEYLCTTAEKLA-DEGRKFDAVLS 204 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHhcC---cccceeEEecCHHHhh-hccCCCCEEEE
Confidence 3468999999999999888764 4689999999999999998864321 1358999999987653 23578999998
Q ss_pred eCC-CCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699 182 DLA-DPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (337)
Q Consensus 182 D~~-dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~ 219 (337)
-.. .... . -.+|++. ++++|+|||.+++..
T Consensus 205 ~~vLeHv~-d------~~~~L~~-l~r~LkPGG~liist 235 (322)
T PLN02396 205 LEVIEHVA-N------PAEFCKS-LSALTIPNGATVLST 235 (322)
T ss_pred hhHHHhcC-C------HHHHHHH-HHHHcCCCcEEEEEE
Confidence 543 2221 1 2478998 899999999998875
No 87
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=98.97 E-value=1.6e-10 Score=91.37 Aligned_cols=99 Identities=19% Similarity=0.196 Sum_probs=60.0
Q ss_pred EEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEEEeCCCC
Q 019699 107 FIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADP 186 (337)
Q Consensus 107 LiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~D~~dp 186 (337)
|+||||+|.++..++++.+..+++++|+++.+++.|++.+..... ....++++...|..+. ...++||+|++-..-.
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~fD~V~~~~vl~ 77 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGN-DNFERLRFDVLDLFDY--DPPESFDLVVASNVLH 77 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT----EEEEE--SSS---C--CC----SEEEEE-TTS
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCC-cceeEEEeecCChhhc--ccccccceehhhhhHh
Confidence 799999999999999987789999999999999988888764320 0011333333332221 1125899999876533
Q ss_pred CCCCCCcCCchHHHHHHHhccccCCCceE
Q 019699 187 IEGGPCYKLYTKSFYEFVVKPRLNPEGIF 215 (337)
Q Consensus 187 ~~~~p~~~L~t~ef~~~~~~~~L~p~Gvl 215 (337)
+. -...++++. +++.|+|||+|
T Consensus 78 ~l------~~~~~~l~~-~~~~L~pgG~l 99 (99)
T PF08242_consen 78 HL------EDIEAVLRN-IYRLLKPGGIL 99 (99)
T ss_dssp --------S-HHHHHHH-HTTT-TSS-EE
T ss_pred hh------hhHHHHHHH-HHHHcCCCCCC
Confidence 21 123588998 89999999986
No 88
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=98.97 E-value=7.7e-09 Score=91.25 Aligned_cols=110 Identities=18% Similarity=0.220 Sum_probs=87.4
Q ss_pred CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCc--eeE
Q 019699 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKES--YDV 178 (337)
Q Consensus 101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~--yDv 178 (337)
-+..++||+-+|+|+++.|++.+ +..+++.||.|.+.+.+.+++..... ...+.+++..|+..+|+....+ ||+
T Consensus 42 i~g~~~LDlFAGSGaLGlEAlSR-GA~~~~~vE~~~~a~~~l~~N~~~l~---~~~~~~~~~~da~~~L~~~~~~~~FDl 117 (187)
T COG0742 42 IEGARVLDLFAGSGALGLEALSR-GAARVVFVEKDRKAVKILKENLKALG---LEGEARVLRNDALRALKQLGTREPFDL 117 (187)
T ss_pred cCCCEEEEecCCccHhHHHHHhC-CCceEEEEecCHHHHHHHHHHHHHhC---CccceEEEeecHHHHHHhcCCCCcccE
Confidence 46789999999999999999997 57899999999999999999976432 1478999999999999887666 999
Q ss_pred EEEeCCCCCCCCCCcCCc--hHHHHHHHhccccCCCceEEEeCC
Q 019699 179 IIGDLADPIEGGPCYKLY--TKSFYEFVVKPRLNPEGIFVTQAG 220 (337)
Q Consensus 179 Ii~D~~dp~~~~p~~~L~--t~ef~~~~~~~~L~p~Gvlv~~~~ 220 (337)
|++|+|... .+. ........-...|+|+|++++...
T Consensus 118 VflDPPy~~------~l~~~~~~~~~~~~~~~L~~~~~iv~E~~ 155 (187)
T COG0742 118 VFLDPPYAK------GLLDKELALLLLEENGWLKPGALIVVEHD 155 (187)
T ss_pred EEeCCCCcc------chhhHHHHHHHHHhcCCcCCCcEEEEEeC
Confidence 999997543 233 222222101578999999999864
No 89
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=98.96 E-value=3.2e-09 Score=99.78 Aligned_cols=106 Identities=20% Similarity=0.255 Sum_probs=75.5
Q ss_pred CCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEE
Q 019699 100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (337)
Q Consensus 100 ~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvI 179 (337)
..+..+||+||||.|+++..+++++ ..+|++|.++++-.+.+++...... + ..++++..+|.+++ +.+||.|
T Consensus 60 l~~G~~vLDiGcGwG~~~~~~a~~~-g~~v~gitlS~~Q~~~a~~~~~~~g--l-~~~v~v~~~D~~~~----~~~fD~I 131 (273)
T PF02353_consen 60 LKPGDRVLDIGCGWGGLAIYAAERY-GCHVTGITLSEEQAEYARERIREAG--L-EDRVEVRLQDYRDL----PGKFDRI 131 (273)
T ss_dssp --TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCST--S-SSTEEEEES-GGG-------S-SEE
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHc-CcEEEEEECCHHHHHHHHHHHHhcC--C-CCceEEEEeecccc----CCCCCEE
Confidence 3567899999999999999999987 4689999999999999999876432 2 36899999997654 3489998
Q ss_pred EEeC-CCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699 180 IGDL-ADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (337)
Q Consensus 180 i~D~-~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~ 219 (337)
++=- .... ++ -.-..||+. +.+.|+|||.++++.
T Consensus 132 vSi~~~Ehv--g~---~~~~~~f~~-~~~~LkpgG~~~lq~ 166 (273)
T PF02353_consen 132 VSIEMFEHV--GR---KNYPAFFRK-ISRLLKPGGRLVLQT 166 (273)
T ss_dssp EEESEGGGT--CG---GGHHHHHHH-HHHHSETTEEEEEEE
T ss_pred EEEechhhc--Ch---hHHHHHHHH-HHHhcCCCcEEEEEe
Confidence 8753 2221 11 123589998 899999999999885
No 90
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=98.95 E-value=6.5e-09 Score=96.07 Aligned_cols=100 Identities=13% Similarity=0.131 Sum_probs=76.5
Q ss_pred CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (337)
Q Consensus 101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi 180 (337)
..+.+||+||||+|.++..+.+. ..+++++|+++.+++.|++... ..+++.+|+... .-..++||+|+
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~~D~s~~~l~~a~~~~~---------~~~~~~~d~~~~-~~~~~~fD~V~ 108 (251)
T PRK10258 41 RKFTHVLDAGCGPGWMSRYWRER--GSQVTALDLSPPMLAQARQKDA---------ADHYLAGDIESL-PLATATFDLAW 108 (251)
T ss_pred cCCCeEEEeeCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhCC---------CCCEEEcCcccC-cCCCCcEEEEE
Confidence 35689999999999999888775 3789999999999999988642 235778887653 22346899999
Q ss_pred EeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (337)
Q Consensus 181 ~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~ 219 (337)
+...-.+... ..++++. +.+.|+|||.+++..
T Consensus 109 s~~~l~~~~d------~~~~l~~-~~~~Lk~gG~l~~~~ 140 (251)
T PRK10258 109 SNLAVQWCGN------LSTALRE-LYRVVRPGGVVAFTT 140 (251)
T ss_pred ECchhhhcCC------HHHHHHH-HHHHcCCCeEEEEEe
Confidence 9876443111 2467888 799999999998764
No 91
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=98.93 E-value=5.1e-09 Score=97.92 Aligned_cols=107 Identities=20% Similarity=0.250 Sum_probs=79.9
Q ss_pred cCCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeE
Q 019699 99 HHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV 178 (337)
Q Consensus 99 ~~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDv 178 (337)
...+..+||+||||+|..+..+++.. ..+|+++|+++.+++.|++.+.. .++++++.+|+.+. .-..++||+
T Consensus 49 ~l~~~~~VLDiGcG~G~~a~~la~~~-~~~v~giD~s~~~~~~a~~~~~~------~~~i~~~~~D~~~~-~~~~~~FD~ 120 (263)
T PTZ00098 49 ELNENSKVLDIGSGLGGGCKYINEKY-GAHVHGVDICEKMVNIAKLRNSD------KNKIEFEANDILKK-DFPENTFDM 120 (263)
T ss_pred CCCCCCEEEEEcCCCChhhHHHHhhc-CCEEEEEECCHHHHHHHHHHcCc------CCceEEEECCcccC-CCCCCCeEE
Confidence 33566899999999999999888765 46899999999999999987542 36899999997642 112468999
Q ss_pred EEEe-CCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699 179 IIGD-LADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (337)
Q Consensus 179 Ii~D-~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~ 219 (337)
|++- ..... +.. -...+++. +.+.|+|||.+++..
T Consensus 121 V~s~~~l~h~---~~~--d~~~~l~~-i~r~LkPGG~lvi~d 156 (263)
T PTZ00098 121 IYSRDAILHL---SYA--DKKKLFEK-CYKWLKPNGILLITD 156 (263)
T ss_pred EEEhhhHHhC---CHH--HHHHHHHH-HHHHcCCCcEEEEEE
Confidence 9983 32221 100 12468888 799999999998753
No 92
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=98.93 E-value=7.2e-09 Score=93.71 Aligned_cols=127 Identities=22% Similarity=0.367 Sum_probs=88.1
Q ss_pred CCCCeEEEEecchhHHHHHHHhcC-CCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHH--H----hh-c
Q 019699 101 PNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE--L----ES-R 172 (337)
Q Consensus 101 ~~p~~VLiIG~G~G~~~~~ll~~~-~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~--l----~~-~ 172 (337)
.+..+||+||||+|.++..+++.. +..+|++||+++. . ..++++++.+|+.+. + .. .
T Consensus 50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~-----------~----~~~~v~~i~~D~~~~~~~~~i~~~~~ 114 (209)
T PRK11188 50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM-----------D----PIVGVDFLQGDFRDELVLKALLERVG 114 (209)
T ss_pred CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc-----------c----CCCCcEEEecCCCChHHHHHHHHHhC
Confidence 456799999999999999998874 3468999999981 0 125689999998763 1 11 2
Q ss_pred CCceeEEEEeCCCCCCCCCCcCC-----chHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhhcCceeE
Q 019699 173 KESYDVIIGDLADPIEGGPCYKL-----YTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVP 247 (337)
Q Consensus 173 ~~~yDvIi~D~~dp~~~~p~~~L-----~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~vF~~v~~ 247 (337)
.+.||+|++|....+...+.... ...+.++. +.+.|+|||.+++-. + ..+.+..++..++..|..+..
T Consensus 115 ~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~-~~~~LkpGG~~vi~~-----~-~~~~~~~~l~~l~~~f~~v~~ 187 (209)
T PRK11188 115 DSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDM-CRDVLAPGGSFVVKV-----F-QGEGFDEYLREIRSLFTKVKV 187 (209)
T ss_pred CCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHH-HHHHcCCCCEEEEEE-----e-cCcCHHHHHHHHHhCceEEEE
Confidence 46899999997422211111000 12457787 789999999998853 1 223456677888889998876
Q ss_pred EE
Q 019699 248 YS 249 (337)
Q Consensus 248 ~~ 249 (337)
+.
T Consensus 188 ~K 189 (209)
T PRK11188 188 RK 189 (209)
T ss_pred EC
Confidence 54
No 93
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=98.92 E-value=4.3e-09 Score=95.72 Aligned_cols=102 Identities=17% Similarity=0.216 Sum_probs=75.9
Q ss_pred CCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEEE
Q 019699 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG 181 (337)
Q Consensus 102 ~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~ 181 (337)
..++|||||||+|.++..+++.. .+|+++|++++.|+.|+.+-.... =.++.......+... ..++||+|++
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~G--a~VtgiD~se~~I~~Ak~ha~e~g-----v~i~y~~~~~edl~~-~~~~FDvV~c 130 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARLG--ASVTGIDASEKPIEVAKLHALESG-----VNIDYRQATVEDLAS-AGGQFDVVTC 130 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHCC--CeeEEecCChHHHHHHHHhhhhcc-----ccccchhhhHHHHHh-cCCCccEEEE
Confidence 56899999999999999998863 899999999999999999865432 124455555555443 3489999987
Q ss_pred eC-CCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699 182 DL-ADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (337)
Q Consensus 182 D~-~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~ 219 (337)
-= -.+. ..| ..|.+. |.++++|||++++..
T Consensus 131 mEVlEHv-~dp------~~~~~~-c~~lvkP~G~lf~ST 161 (243)
T COG2227 131 MEVLEHV-PDP------ESFLRA-CAKLVKPGGILFLST 161 (243)
T ss_pred hhHHHcc-CCH------HHHHHH-HHHHcCCCcEEEEec
Confidence 52 2221 012 358888 799999999998764
No 94
>PRK14968 putative methyltransferase; Provisional
Probab=98.92 E-value=2.5e-08 Score=87.38 Aligned_cols=111 Identities=21% Similarity=0.235 Sum_probs=81.7
Q ss_pred CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (337)
Q Consensus 101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi 180 (337)
.+.++||++|||+|.++..+++. ..+++++|+++++++.+++.+.... ..+.+++++.+|..+.+. .++||+|+
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~--~~~~~~~~~~~d~~~~~~--~~~~d~vi 95 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKN--GKKVVGVDINPYAVECAKCNAKLNN--IRNNGVEVIRSDLFEPFR--GDKFDVIL 95 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhh--cceEEEEECCHHHHHHHHHHHHHcC--CCCcceEEEecccccccc--ccCceEEE
Confidence 46678999999999999999987 4789999999999999999876432 223338899999876543 24799999
Q ss_pred EeCCCCCCCCCCc----------------CCchHHHHHHHhccccCCCceEEEeC
Q 019699 181 GDLADPIEGGPCY----------------KLYTKSFYEFVVKPRLNPEGIFVTQA 219 (337)
Q Consensus 181 ~D~~dp~~~~p~~----------------~L~t~ef~~~~~~~~L~p~Gvlv~~~ 219 (337)
++++.... .+.. ......|++. +.++|+|+|.+++..
T Consensus 96 ~n~p~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~Lk~gG~~~~~~ 148 (188)
T PRK14968 96 FNPPYLPT-EEEEEWDDWLNYALSGGKDGREVIDRFLDE-VGRYLKPGGRILLLQ 148 (188)
T ss_pred ECCCcCCC-CchhhhhhhhhhhhccCcChHHHHHHHHHH-HHHhcCCCeEEEEEE
Confidence 98752110 1100 0112457888 789999999887765
No 95
>PHA03411 putative methyltransferase; Provisional
Probab=98.92 E-value=1.6e-08 Score=94.49 Aligned_cols=108 Identities=19% Similarity=0.201 Sum_probs=80.1
Q ss_pred CCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEEE
Q 019699 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG 181 (337)
Q Consensus 102 ~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~ 181 (337)
...+||++|||+|.++..++++.+..+|++||+|+.+++.|++.+ ++++++.+|++++.. .++||+|++
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~---------~~v~~v~~D~~e~~~--~~kFDlIIs 132 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL---------PEAEWITSDVFEFES--NEKFDVVIS 132 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC---------cCCEEEECchhhhcc--cCCCcEEEE
Confidence 357999999999999998888654579999999999999998853 468899999998863 368999999
Q ss_pred eCCCCCCCCCC--cC--Cc-----------hHHHHHHHhccccCCCceEEE-eCCCC
Q 019699 182 DLADPIEGGPC--YK--LY-----------TKSFYEFVVKPRLNPEGIFVT-QAGPA 222 (337)
Q Consensus 182 D~~dp~~~~p~--~~--L~-----------t~ef~~~~~~~~L~p~Gvlv~-~~~~p 222 (337)
+++-... .+. .. -+ -..|+.. +...|+|+|.+.+ ..+.|
T Consensus 133 NPPF~~l-~~~d~~~~~~~~GG~~g~~~l~~~~~l~~-v~~~L~p~G~~~~~yss~~ 187 (279)
T PHA03411 133 NPPFGKI-NTTDTKDVFEYTGGEFEFKVMTLGQKFAD-VGYFIVPTGSAGFAYSGRP 187 (279)
T ss_pred cCCcccc-CchhhhhhhhhccCccccccccHHHHHhh-hHheecCCceEEEEEeccc
Confidence 9973221 000 01 11 2467777 6889999996543 33434
No 96
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=98.91 E-value=2e-08 Score=89.47 Aligned_cols=107 Identities=18% Similarity=0.087 Sum_probs=81.9
Q ss_pred CCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhc---CCceeE
Q 019699 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR---KESYDV 178 (337)
Q Consensus 102 ~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~---~~~yDv 178 (337)
..++||++++|+|.++.+++.+. ..+|++||+|+..++.+++++..+. + ..+++++.+|+.++++.. ...||+
T Consensus 49 ~g~~vLDLfaGsG~lglea~srg-a~~v~~vE~~~~a~~~~~~N~~~~~--~-~~~~~~~~~D~~~~l~~~~~~~~~~dv 124 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRG-AKVAFLEEDDRKANQTLKENLALLK--S-GEQAEVVRNSALRALKFLAKKPTFDNV 124 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHhC--C-cccEEEEehhHHHHHHHhhccCCCceE
Confidence 46899999999999999999974 5689999999999999999987653 1 247999999999988642 234899
Q ss_pred EEEeCCCCCCCCCCcCCchHHHHHHHh-ccccCCCceEEEeC
Q 019699 179 IIGDLADPIEGGPCYKLYTKSFYEFVV-KPRLNPEGIFVTQA 219 (337)
Q Consensus 179 Ii~D~~dp~~~~p~~~L~t~ef~~~~~-~~~L~p~Gvlv~~~ 219 (337)
|+.|++... .+ ..+.+..+. ...|+++|++++..
T Consensus 125 v~~DPPy~~------~~-~~~~l~~l~~~~~l~~~~iiv~E~ 159 (189)
T TIGR00095 125 IYLDPPFFN------GA-LQALLELCENNWILEDTVLIVVEE 159 (189)
T ss_pred EEECcCCCC------Cc-HHHHHHHHHHCCCCCCCeEEEEEe
Confidence 999987432 11 233344311 35799999999875
No 97
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.91 E-value=3.2e-08 Score=98.80 Aligned_cols=136 Identities=16% Similarity=0.110 Sum_probs=94.1
Q ss_pred CCCCCeEEEEecchhHHHHHHHhcC-CCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeE
Q 019699 100 HPNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV 178 (337)
Q Consensus 100 ~~~p~~VLiIG~G~G~~~~~ll~~~-~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDv 178 (337)
..++.+||++|+|.|+.+..++... +..+|+++|+++..++.+++++...+ -.+++++.+|+..+-....++||.
T Consensus 235 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g----~~~v~~~~~Da~~l~~~~~~~fD~ 310 (431)
T PRK14903 235 LEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLK----LSSIEIKIADAERLTEYVQDTFDR 310 (431)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcC----CCeEEEEECchhhhhhhhhccCCE
Confidence 3456799999999999998888763 35689999999999999999876432 235899999998764333467999
Q ss_pred EEEeCCCCCCCCCC----cC-----------C--chHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhh
Q 019699 179 IIGDLADPIEGGPC----YK-----------L--YTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV 241 (337)
Q Consensus 179 Ii~D~~dp~~~~p~----~~-----------L--~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~v 241 (337)
|++|++-... |.. .. + ...+.+.. +.+.|+|||.++..+.+. .++....+++.+-+.
T Consensus 311 Vl~DaPCsg~-G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~-a~~~LkpGG~LvYsTCs~----~~eEne~vv~~fl~~ 384 (431)
T PRK14903 311 ILVDAPCTSL-GTARNHPEVLRRVNKEDFKKLSEIQLRIVSQ-AWKLLEKGGILLYSTCTV----TKEENTEVVKRFVYE 384 (431)
T ss_pred EEECCCCCCC-ccccCChHHHHhCCHHHHHHHHHHHHHHHHH-HHHhcCCCCEEEEEECCC----ChhhCHHHHHHHHHh
Confidence 9999873211 110 00 0 23556777 689999999988765432 333344455544444
Q ss_pred cCce
Q 019699 242 FKYV 245 (337)
Q Consensus 242 F~~v 245 (337)
+|..
T Consensus 385 ~~~~ 388 (431)
T PRK14903 385 QKDA 388 (431)
T ss_pred CCCc
Confidence 5554
No 98
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.91 E-value=4.7e-08 Score=97.59 Aligned_cols=115 Identities=20% Similarity=0.252 Sum_probs=83.8
Q ss_pred CCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhh-cCCceeE
Q 019699 100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDV 178 (337)
Q Consensus 100 ~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~-~~~~yDv 178 (337)
..+..+||++|+|+|+.+..+++..+..+|+++|+++..++.+++++...+ -+++++.+|+.+.... ..++||.
T Consensus 242 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g-----~~~~~~~~D~~~~~~~~~~~~fD~ 316 (427)
T PRK10901 242 PQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLG-----LKATVIVGDARDPAQWWDGQPFDR 316 (427)
T ss_pred CCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcC-----CCeEEEEcCcccchhhcccCCCCE
Confidence 345679999999999999999987544699999999999999999886532 2468999999764321 2367999
Q ss_pred EEEeCCCCCC----CCCCcCC------------chHHHHHHHhccccCCCceEEEeCC
Q 019699 179 IIGDLADPIE----GGPCYKL------------YTKSFYEFVVKPRLNPEGIFVTQAG 220 (337)
Q Consensus 179 Ii~D~~dp~~----~~p~~~L------------~t~ef~~~~~~~~L~p~Gvlv~~~~ 220 (337)
|++|++-... ..|.... ...++++. +.+.|+|||.++..+.
T Consensus 317 Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~-a~~~LkpGG~lvystc 373 (427)
T PRK10901 317 ILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDA-LWPLLKPGGTLLYATC 373 (427)
T ss_pred EEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHH-HHHhcCCCCEEEEEeC
Confidence 9999973210 0111000 11357887 7899999999987654
No 99
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.91 E-value=4.6e-09 Score=94.97 Aligned_cols=114 Identities=23% Similarity=0.281 Sum_probs=79.9
Q ss_pred hhHHHHHHhHHHhcCCCCCeEEEEecchhHHHHHHHhcC-CCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEcc
Q 019699 86 FIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVIND 164 (337)
Q Consensus 86 ~~Y~e~l~~~~l~~~~~p~~VLiIG~G~G~~~~~ll~~~-~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D 164 (337)
..+..++-++ ...+..+||+||+|+|..+.-+++.- +..+|+.||+++.+++.|++.+.... -.+++++.+|
T Consensus 59 ~~~a~~l~~L---~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~----~~nv~~~~gd 131 (209)
T PF01135_consen 59 SMVARMLEAL---DLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLG----IDNVEVVVGD 131 (209)
T ss_dssp HHHHHHHHHT---TC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHT----THSEEEEES-
T ss_pred HHHHHHHHHH---hcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhc----cCceeEEEcc
Confidence 3455555432 23566899999999999988777652 34579999999999999999987532 3489999999
Q ss_pred HHHHHhhcCCceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCC
Q 019699 165 ARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG 220 (337)
Q Consensus 165 ~~~~l~~~~~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~ 220 (337)
+..-+.. ...||.|++...-+. -| .. +.+.|++||++++-.+
T Consensus 132 g~~g~~~-~apfD~I~v~~a~~~--ip------~~-----l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 132 GSEGWPE-EAPFDRIIVTAAVPE--IP------EA-----LLEQLKPGGRLVAPIG 173 (209)
T ss_dssp GGGTTGG-G-SEEEEEESSBBSS----------HH-----HHHTEEEEEEEEEEES
T ss_pred hhhcccc-CCCcCEEEEeeccch--HH------HH-----HHHhcCCCcEEEEEEc
Confidence 9876544 357999999986432 23 12 3456999999998654
No 100
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=98.90 E-value=1.1e-08 Score=96.91 Aligned_cols=135 Identities=19% Similarity=0.269 Sum_probs=89.9
Q ss_pred CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (337)
Q Consensus 101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi 180 (337)
.+.++||++|||+|.++..+++. +..+|+++||||..++.|+++...|+ .. .++++.. ..+. ...+||+|+
T Consensus 160 ~~g~~vLDvG~GSGILaiaA~kl-GA~~v~a~DiDp~Av~~a~~N~~~N~--~~-~~~~v~~--~~~~---~~~~~dlvv 230 (295)
T PF06325_consen 160 KPGKRVLDVGCGSGILAIAAAKL-GAKKVVAIDIDPLAVEAARENAELNG--VE-DRIEVSL--SEDL---VEGKFDLVV 230 (295)
T ss_dssp STTSEEEEES-TTSHHHHHHHHT-TBSEEEEEESSCHHHHHHHHHHHHTT---T-TCEEESC--TSCT---CCS-EEEEE
T ss_pred cCCCEEEEeCCcHHHHHHHHHHc-CCCeEEEecCCHHHHHHHHHHHHHcC--CC-eeEEEEE--eccc---ccccCCEEE
Confidence 45689999999999999999986 57899999999999999999988764 22 3666531 1111 238899999
Q ss_pred EeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhhcCceeEEEeeccccCCceE
Q 019699 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSFADTWG 260 (337)
Q Consensus 181 ~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~vF~~v~~~~~~vP~~~~~~~ 260 (337)
.+...+ .| .+.... +.++|+|||.+++.. ... +....+.+.+++-|..+..- ..+.|.
T Consensus 231 ANI~~~-------vL--~~l~~~-~~~~l~~~G~lIlSG-----Il~-~~~~~v~~a~~~g~~~~~~~------~~~~W~ 288 (295)
T PF06325_consen 231 ANILAD-------VL--LELAPD-IASLLKPGGYLILSG-----ILE-EQEDEVIEAYKQGFELVEER------EEGEWV 288 (295)
T ss_dssp EES-HH-------HH--HHHHHH-CHHHEEEEEEEEEEE-----EEG-GGHHHHHHHHHTTEEEEEEE------EETTEE
T ss_pred ECCCHH-------HH--HHHHHH-HHHhhCCCCEEEEcc-----ccH-HHHHHHHHHHHCCCEEEEEE------EECCEE
Confidence 998621 11 244555 678999999999853 222 23456666665533322211 135688
Q ss_pred EEEEec
Q 019699 261 WIMASD 266 (337)
Q Consensus 261 ~~~as~ 266 (337)
-+++.|
T Consensus 289 ~l~~~K 294 (295)
T PF06325_consen 289 ALVFKK 294 (295)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 777665
No 101
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=98.90 E-value=3.3e-08 Score=87.67 Aligned_cols=136 Identities=15% Similarity=0.197 Sum_probs=92.2
Q ss_pred hcCCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCcee
Q 019699 98 LHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYD 177 (337)
Q Consensus 98 ~~~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yD 177 (337)
+..+.-.++|++|||.|.++..|+.+. .+++++|+++..++.||+.+.. -++++++..|.-++. ..++||
T Consensus 39 Lp~~ry~~alEvGCs~G~lT~~LA~rC--d~LlavDis~~Al~~Ar~Rl~~------~~~V~~~~~dvp~~~--P~~~FD 108 (201)
T PF05401_consen 39 LPRRRYRRALEVGCSIGVLTERLAPRC--DRLLAVDISPRALARARERLAG------LPHVEWIQADVPEFW--PEGRFD 108 (201)
T ss_dssp HTTSSEEEEEEE--TTSHHHHHHGGGE--EEEEEEES-HHHHHHHHHHTTT-------SSEEEEES-TTT-----SS-EE
T ss_pred cCccccceeEecCCCccHHHHHHHHhh--CceEEEeCCHHHHHHHHHhcCC------CCCeEEEECcCCCCC--CCCCee
Confidence 345566899999999999999999874 6899999999999999998753 278999999987775 357899
Q ss_pred EEEEeCCCCCCCCCCcCCch----HHHHHHHhccccCCCceEEEeCCCC---CcCCChhHHHHHHHHHhhhcCceeEEEe
Q 019699 178 VIIGDLADPIEGGPCYKLYT----KSFYEFVVKPRLNPEGIFVTQAGPA---GIFSHTEVFSCIYNTLRQVFKYVVPYSA 250 (337)
Q Consensus 178 vIi~D~~dp~~~~p~~~L~t----~ef~~~~~~~~L~p~Gvlv~~~~~p---~~~~~~~~~~~i~~~l~~vF~~v~~~~~ 250 (337)
+|++.-- ...|.. ..+.+. +.++|+|||.+++-.-.. ..|.+..-.+.+...|.+.|..|.-...
T Consensus 109 LIV~SEV-------lYYL~~~~~L~~~l~~-l~~~L~pgG~LV~g~~rd~~c~~wgh~~ga~tv~~~~~~~~~~~~~~~~ 180 (201)
T PF05401_consen 109 LIVLSEV-------LYYLDDAEDLRAALDR-LVAALAPGGHLVFGHARDANCRRWGHAAGAETVLEMLQEHLTEVERVEC 180 (201)
T ss_dssp EEEEES--------GGGSSSHHHHHHHHHH-HHHTEEEEEEEEEEEE-HHHHHHTT-S--HHHHHHHHHHHSEEEEEEEE
T ss_pred EEEEehH-------hHcCCCHHHHHHHHHH-HHHHhCCCCEEEEEEecCCcccccCcccchHHHHHHHHHHhhheeEEEE
Confidence 9998732 122222 235666 678999999998732100 0144555567788888888888766554
Q ss_pred e
Q 019699 251 H 251 (337)
Q Consensus 251 ~ 251 (337)
.
T Consensus 181 ~ 181 (201)
T PF05401_consen 181 R 181 (201)
T ss_dssp E
T ss_pred c
Confidence 3
No 102
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=98.89 E-value=1.5e-08 Score=94.75 Aligned_cols=106 Identities=21% Similarity=0.271 Sum_probs=79.2
Q ss_pred CCCCeEEEEecchhHHHHHHHhcC-CCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEE
Q 019699 101 PNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (337)
Q Consensus 101 ~~p~~VLiIG~G~G~~~~~ll~~~-~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvI 179 (337)
....+||+||+|+|..+..+++.. +..+|++||+++.+++.|+++..... -++++++.+|..+ +....+.||+|
T Consensus 76 ~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g----~~~v~~~~~d~~~-l~~~~~~fD~V 150 (272)
T PRK11873 76 KPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAG----YTNVEFRLGEIEA-LPVADNSVDVI 150 (272)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcC----CCCEEEEEcchhh-CCCCCCceeEE
Confidence 456899999999998887776653 34589999999999999999865431 2588999999754 33234689999
Q ss_pred EEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (337)
Q Consensus 180 i~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~ 218 (337)
+++..-.. .+ -....++. +.+.|+|||.+++.
T Consensus 151 i~~~v~~~--~~----d~~~~l~~-~~r~LkpGG~l~i~ 182 (272)
T PRK11873 151 ISNCVINL--SP----DKERVFKE-AFRVLKPGGRFAIS 182 (272)
T ss_pred EEcCcccC--CC----CHHHHHHH-HHHHcCCCcEEEEE
Confidence 98864222 11 12467888 79999999998874
No 103
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=98.89 E-value=1e-08 Score=91.54 Aligned_cols=102 Identities=15% Similarity=0.099 Sum_probs=73.8
Q ss_pred CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (337)
Q Consensus 101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi 180 (337)
..+.+||++|||+|..+..++++ ..+|+++|+++.+++.+++...... -++++...|...+ ..+++||+|+
T Consensus 29 ~~~~~vLDiGcG~G~~a~~la~~--g~~V~~iD~s~~~l~~a~~~~~~~~-----~~v~~~~~d~~~~--~~~~~fD~I~ 99 (195)
T TIGR00477 29 VAPCKTLDLGCGQGRNSLYLSLA--GYDVRAWDHNPASIASVLDMKAREN-----LPLRTDAYDINAA--ALNEDYDFIF 99 (195)
T ss_pred CCCCcEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHhC-----CCceeEeccchhc--cccCCCCEEE
Confidence 35689999999999999999986 3689999999999999988764321 1367777776432 1236799999
Q ss_pred EeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEE
Q 019699 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFV 216 (337)
Q Consensus 181 ~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv 216 (337)
+...-.. .+ .-...++++. ++++|+|||.++
T Consensus 100 ~~~~~~~--~~--~~~~~~~l~~-~~~~LkpgG~ll 130 (195)
T TIGR00477 100 STVVFMF--LQ--AGRVPEIIAN-MQAHTRPGGYNL 130 (195)
T ss_pred Eeccccc--CC--HHHHHHHHHH-HHHHhCCCcEEE
Confidence 8754221 11 0123468888 799999999744
No 104
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.88 E-value=7.1e-08 Score=96.48 Aligned_cols=115 Identities=16% Similarity=0.152 Sum_probs=84.1
Q ss_pred CCCCCeEEEEecchhHHHHHHHhcC-CCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhh---cCCc
Q 019699 100 HPNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES---RKES 175 (337)
Q Consensus 100 ~~~p~~VLiIG~G~G~~~~~ll~~~-~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~---~~~~ 175 (337)
..+..+||++|+|.|+.+..+++.. +..+|+++|+++..++.+++++...+ -.+++++.+|+.++... ..++
T Consensus 250 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g----~~~v~~~~~D~~~~~~~~~~~~~~ 325 (434)
T PRK14901 250 PQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLG----LKSIKILAADSRNLLELKPQWRGY 325 (434)
T ss_pred CCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcC----CCeEEEEeCChhhccccccccccc
Confidence 3456899999999999999888753 34689999999999999999886432 13599999999876421 2368
Q ss_pred eeEEEEeCCC-CCC---CCCCcC--C----------chHHHHHHHhccccCCCceEEEeC
Q 019699 176 YDVIIGDLAD-PIE---GGPCYK--L----------YTKSFYEFVVKPRLNPEGIFVTQA 219 (337)
Q Consensus 176 yDvIi~D~~d-p~~---~~p~~~--L----------~t~ef~~~~~~~~L~p~Gvlv~~~ 219 (337)
||.|++|++- ... ..|... . ...++++. +.+.|+|||.++..+
T Consensus 326 fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~-a~~~lkpgG~lvyst 384 (434)
T PRK14901 326 FDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLES-LAPLLKPGGTLVYAT 384 (434)
T ss_pred CCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHH-HHHhcCCCCEEEEEe
Confidence 9999999872 110 011100 0 02567888 789999999988665
No 105
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.88 E-value=4.1e-08 Score=98.45 Aligned_cols=133 Identities=17% Similarity=0.123 Sum_probs=91.7
Q ss_pred CCCCeEEEEecchhHHHHHHHhcC-CCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEE
Q 019699 101 PNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (337)
Q Consensus 101 ~~p~~VLiIG~G~G~~~~~ll~~~-~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvI 179 (337)
.+..+||++|+|+|+.+..++++. ...+|+++|+++..++.+++++...+ + .+++++.+|+..+.. ..+||+|
T Consensus 249 ~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g--~--~~v~~~~~Da~~~~~--~~~fD~V 322 (445)
T PRK14904 249 QPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALG--I--TIIETIEGDARSFSP--EEQPDAI 322 (445)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhC--C--CeEEEEeCccccccc--CCCCCEE
Confidence 455799999999999888877653 34589999999999999999886432 2 368999999988752 4679999
Q ss_pred EEeCCCCCCC----CCCc--CC----------chHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhhcC
Q 019699 180 IGDLADPIEG----GPCY--KL----------YTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFK 243 (337)
Q Consensus 180 i~D~~dp~~~----~p~~--~L----------~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~vF~ 243 (337)
++|++-...+ .|.. .+ ...++++. +.+.|+|||+++..+.+. .++.-..+++.+-+..+
T Consensus 323 l~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~-a~~~lkpgG~lvystcs~----~~~Ene~~v~~~l~~~~ 397 (445)
T PRK14904 323 LLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDH-AASLLKPGGVLVYATCSI----EPEENELQIEAFLQRHP 397 (445)
T ss_pred EEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHH-HHHhcCCCcEEEEEeCCC----ChhhHHHHHHHHHHhCC
Confidence 9998621110 1110 11 12357887 789999999999876543 23333444444444444
Q ss_pred c
Q 019699 244 Y 244 (337)
Q Consensus 244 ~ 244 (337)
.
T Consensus 398 ~ 398 (445)
T PRK14904 398 E 398 (445)
T ss_pred C
Confidence 3
No 106
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=98.88 E-value=1.9e-08 Score=94.96 Aligned_cols=137 Identities=20% Similarity=0.220 Sum_probs=93.3
Q ss_pred CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (337)
Q Consensus 101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi 180 (337)
.++++|||+|||+|.++..+++. +..+|.++||||..+++|+++...|... +..+.-..+...... .++||+|+
T Consensus 161 ~~g~~vlDvGcGSGILaIAa~kL-GA~~v~g~DiDp~AV~aa~eNa~~N~v~---~~~~~~~~~~~~~~~--~~~~DvIV 234 (300)
T COG2264 161 KKGKTVLDVGCGSGILAIAAAKL-GAKKVVGVDIDPQAVEAARENARLNGVE---LLVQAKGFLLLEVPE--NGPFDVIV 234 (300)
T ss_pred cCCCEEEEecCChhHHHHHHHHc-CCceEEEecCCHHHHHHHHHHHHHcCCc---hhhhcccccchhhcc--cCcccEEE
Confidence 47899999999999999999986 5789999999999999999998876421 122333333333332 26899999
Q ss_pred EeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhh-hcCceeEEEeeccccCCce
Q 019699 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQ-VFKYVVPYSAHIPSFADTW 259 (337)
Q Consensus 181 ~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~-vF~~v~~~~~~vP~~~~~~ 259 (337)
.+.-. .|. ..+... ++++|+|||.+++.. ... +....+...+.+ -|..+.... .+.|
T Consensus 235 ANILA----~vl-----~~La~~-~~~~lkpgg~lIlSG-----Il~-~q~~~V~~a~~~~gf~v~~~~~------~~eW 292 (300)
T COG2264 235 ANILA----EVL-----VELAPD-IKRLLKPGGRLILSG-----ILE-DQAESVAEAYEQAGFEVVEVLE------REEW 292 (300)
T ss_pred ehhhH----HHH-----HHHHHH-HHHHcCCCceEEEEe-----ehH-hHHHHHHHHHHhCCCeEeEEEe------cCCE
Confidence 99741 221 255666 688999999998764 222 235566677743 466544322 2457
Q ss_pred EEEEEe
Q 019699 260 GWIMAS 265 (337)
Q Consensus 260 ~~~~as 265 (337)
.-+.+-
T Consensus 293 ~~i~~k 298 (300)
T COG2264 293 VAIVGK 298 (300)
T ss_pred EEEEEE
Confidence 655443
No 107
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=98.87 E-value=1.8e-08 Score=91.48 Aligned_cols=108 Identities=19% Similarity=0.138 Sum_probs=81.9
Q ss_pred CCCCCeEEEEecchhHHHHHHHhcCC-CcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeE
Q 019699 100 HPNPKTIFIMGGGEGSTAREILRHKT-VEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV 178 (337)
Q Consensus 100 ~~~p~~VLiIG~G~G~~~~~ll~~~~-~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDv 178 (337)
..+..+||+||||+|..+..++++.+ ..+++++|+++.+++.+++.+.... .+++++++.+|..+.. ...+.||+
T Consensus 49 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~---~~~~~~~~~~d~~~~~-~~~~~~D~ 124 (239)
T PRK00216 49 VRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLG---LSGNVEFVQGDAEALP-FPDNSFDA 124 (239)
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccc---cccCeEEEecccccCC-CCCCCccE
Confidence 34568999999999999999988754 5899999999999999999875421 2467899999987643 23468999
Q ss_pred EEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (337)
Q Consensus 179 Ii~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~ 218 (337)
|++...-.. .+ ...++++. +.+.|+|||.+++-
T Consensus 125 I~~~~~l~~--~~----~~~~~l~~-~~~~L~~gG~li~~ 157 (239)
T PRK00216 125 VTIAFGLRN--VP----DIDKALRE-MYRVLKPGGRLVIL 157 (239)
T ss_pred EEEeccccc--CC----CHHHHHHH-HHHhccCCcEEEEE
Confidence 988654221 11 13578888 79999999987653
No 108
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=98.86 E-value=2.4e-08 Score=89.73 Aligned_cols=105 Identities=19% Similarity=0.154 Sum_probs=81.3
Q ss_pred CCCCCeEEEEecchhHHHHHHHhcCCC-cEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeE
Q 019699 100 HPNPKTIFIMGGGEGSTAREILRHKTV-EKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV 178 (337)
Q Consensus 100 ~~~p~~VLiIG~G~G~~~~~ll~~~~~-~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDv 178 (337)
...+.+||++|||.|..+..+++..+. .+++++|+++.+++.+++.+. ..++++++.+|..+.. ...++||+
T Consensus 37 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~------~~~~i~~~~~d~~~~~-~~~~~~D~ 109 (223)
T TIGR01934 37 VFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE------LPLNIEFIQADAEALP-FEDNSFDA 109 (223)
T ss_pred cCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc------cCCCceEEecchhcCC-CCCCcEEE
Confidence 446789999999999999999887654 589999999999999998765 1467899999987753 23468999
Q ss_pred EEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (337)
Q Consensus 179 Ii~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~ 218 (337)
|++...... .+ ....+++. +++.|+|||.+++.
T Consensus 110 i~~~~~~~~--~~----~~~~~l~~-~~~~L~~gG~l~~~ 142 (223)
T TIGR01934 110 VTIAFGLRN--VT----DIQKALRE-MYRVLKPGGRLVIL 142 (223)
T ss_pred EEEeeeeCC--cc----cHHHHHHH-HHHHcCCCcEEEEE
Confidence 988654221 11 13468888 79999999988764
No 109
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.86 E-value=2.1e-08 Score=87.31 Aligned_cols=102 Identities=17% Similarity=0.223 Sum_probs=77.0
Q ss_pred CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (337)
Q Consensus 101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi 180 (337)
.+..+||+||+|.|.++.+++++ ..++++||+|+.+++.+++.+.. .++++++.+|+.++... ...||+|+
T Consensus 12 ~~~~~vLEiG~G~G~lt~~l~~~--~~~v~~vE~~~~~~~~~~~~~~~------~~~v~ii~~D~~~~~~~-~~~~d~vi 82 (169)
T smart00650 12 RPGDTVLEIGPGKGALTEELLER--AARVTAIEIDPRLAPRLREKFAA------ADNLTVIHGDALKFDLP-KLQPYKVV 82 (169)
T ss_pred CCcCEEEEECCCccHHHHHHHhc--CCeEEEEECCHHHHHHHHHHhcc------CCCEEEEECchhcCCcc-ccCCCEEE
Confidence 44578999999999999999987 47899999999999999988742 36899999999887432 24699999
Q ss_pred EeCCCCCCCCCCcCCchHHHHHHHhcc-ccCCCceEEEeCC
Q 019699 181 GDLADPIEGGPCYKLYTKSFYEFVVKP-RLNPEGIFVTQAG 220 (337)
Q Consensus 181 ~D~~dp~~~~p~~~L~t~ef~~~~~~~-~L~p~Gvlv~~~~ 220 (337)
+|++-. ..+ +.+..++.. .+.++|++++|..
T Consensus 83 ~n~Py~--------~~~-~~i~~~l~~~~~~~~~~l~~q~e 114 (169)
T smart00650 83 GNLPYN--------IST-PILFKLLEEPPAFRDAVLMVQKE 114 (169)
T ss_pred ECCCcc--------cHH-HHHHHHHhcCCCcceEEEEEEHH
Confidence 997532 222 333332432 3558999999864
No 110
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=98.85 E-value=2.2e-08 Score=96.52 Aligned_cols=111 Identities=21% Similarity=0.054 Sum_probs=82.8
Q ss_pred CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (337)
Q Consensus 101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi 180 (337)
.+..+||++|||+|+++.+++.. ..+++++|+|+.+++.|++++.... -+.++++.+|+.+. ....+.||+|+
T Consensus 181 ~~g~~vLDp~cGtG~~lieaa~~--~~~v~g~Di~~~~~~~a~~nl~~~g----~~~i~~~~~D~~~l-~~~~~~~D~Iv 253 (329)
T TIGR01177 181 TEGDRVLDPFCGTGGFLIEAGLM--GAKVIGCDIDWKMVAGARINLEHYG----IEDFFVKRGDATKL-PLSSESVDAIA 253 (329)
T ss_pred CCcCEEEECCCCCCHHHHHHHHh--CCeEEEEcCCHHHHHHHHHHHHHhC----CCCCeEEecchhcC-CcccCCCCEEE
Confidence 45678999999999999987764 4789999999999999999876432 12388999998763 33357899999
Q ss_pred EeCCCCCCCCCCcCC---chHHHHHHHhccccCCCceEEEeC
Q 019699 181 GDLADPIEGGPCYKL---YTKSFYEFVVKPRLNPEGIFVTQA 219 (337)
Q Consensus 181 ~D~~dp~~~~p~~~L---~t~ef~~~~~~~~L~p~Gvlv~~~ 219 (337)
+|++-.......... .-.++++. +++.|+|||.+++..
T Consensus 254 ~dPPyg~~~~~~~~~~~~l~~~~l~~-~~r~Lk~gG~lv~~~ 294 (329)
T TIGR01177 254 TDPPYGRSTTAAGDGLESLYERSLEE-FHEVLKSEGWIVYAV 294 (329)
T ss_pred ECCCCcCcccccCCchHHHHHHHHHH-HHHHccCCcEEEEEE
Confidence 998743321111111 13578888 799999999888765
No 111
>PHA03412 putative methyltransferase; Provisional
Probab=98.85 E-value=2.4e-08 Score=91.40 Aligned_cols=103 Identities=12% Similarity=0.159 Sum_probs=73.5
Q ss_pred CCCeEEEEecchhHHHHHHHhcC---CCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeE
Q 019699 102 NPKTIFIMGGGEGSTAREILRHK---TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV 178 (337)
Q Consensus 102 ~p~~VLiIG~G~G~~~~~ll~~~---~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDv 178 (337)
...+||++|+|+|.++..+++.. +..+|++||||+.+++.|+++. ++++++.+|...+. ...+||+
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~---------~~~~~~~~D~~~~~--~~~~FDl 117 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV---------PEATWINADALTTE--FDTLFDM 117 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc---------cCCEEEEcchhccc--ccCCccE
Confidence 46799999999999999888752 2468999999999999999763 35789999987643 2468999
Q ss_pred EEEeCCCCCCCCC------CcCCchHHHHHHHhccccCCCceEEE
Q 019699 179 IIGDLADPIEGGP------CYKLYTKSFYEFVVKPRLNPEGIFVT 217 (337)
Q Consensus 179 Ii~D~~dp~~~~p------~~~L~t~ef~~~~~~~~L~p~Gvlv~ 217 (337)
||++++-...... ...+....|++. +.+ |.+.|.+++
T Consensus 118 IIsNPPY~~~~~~d~~ar~~g~~~~~~li~~-A~~-Ll~~G~~IL 160 (241)
T PHA03412 118 AISNPPFGKIKTSDFKGKYTGAEFEYKVIER-ASQ-IARQGTFII 160 (241)
T ss_pred EEECCCCCCccccccCCcccccHHHHHHHHH-HHH-HcCCCEEEe
Confidence 9999983211100 012344567777 566 555555554
No 112
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=98.85 E-value=1.9e-08 Score=97.13 Aligned_cols=103 Identities=16% Similarity=0.073 Sum_probs=78.3
Q ss_pred CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (337)
Q Consensus 101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi 180 (337)
....+||+||||+|.++..++++.+..+++++|+++++++.|++... .++++++.+|+.+. .-..+.||+|+
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~-------~~~i~~i~gD~e~l-p~~~~sFDvVI 183 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-------LKECKIIEGDAEDL-PFPTDYADRYV 183 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhh-------ccCCeEEeccHHhC-CCCCCceeEEE
Confidence 34579999999999999888887556799999999999999998653 24688999998653 22346899999
Q ss_pred EeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (337)
Q Consensus 181 ~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~ 218 (337)
+...-.. .+ -....+++ +.+.|+|||.+++-
T Consensus 184 s~~~L~~--~~----d~~~~L~e-~~rvLkPGG~LvIi 214 (340)
T PLN02490 184 SAGSIEY--WP----DPQRGIKE-AYRVLKIGGKACLI 214 (340)
T ss_pred EcChhhh--CC----CHHHHHHH-HHHhcCCCcEEEEE
Confidence 8653221 11 12357788 79999999998763
No 113
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=98.84 E-value=1.7e-08 Score=94.56 Aligned_cols=106 Identities=20% Similarity=0.290 Sum_probs=84.1
Q ss_pred CCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEE
Q 019699 100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (337)
Q Consensus 100 ~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvI 179 (337)
..+..+||+||||.|+++..+++++ ..+|++|.++++..+.+++-+...+ + ..+++++..|-+++ .++||-|
T Consensus 70 L~~G~~lLDiGCGWG~l~~~aA~~y-~v~V~GvTlS~~Q~~~~~~r~~~~g--l-~~~v~v~l~d~rd~----~e~fDrI 141 (283)
T COG2230 70 LKPGMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTLSEEQLAYAEKRIAARG--L-EDNVEVRLQDYRDF----EEPFDRI 141 (283)
T ss_pred CCCCCEEEEeCCChhHHHHHHHHHc-CCEEEEeeCCHHHHHHHHHHHHHcC--C-CcccEEEecccccc----cccccee
Confidence 4677999999999999999999988 5799999999999999999765432 2 25899999997665 3459999
Q ss_pred EEe-CCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699 180 IGD-LADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (337)
Q Consensus 180 i~D-~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~ 219 (337)
++= .+... ++ =.-..||+. +++.|+|||.+++++
T Consensus 142 vSvgmfEhv--g~---~~~~~ff~~-~~~~L~~~G~~llh~ 176 (283)
T COG2230 142 VSVGMFEHV--GK---ENYDDFFKK-VYALLKPGGRMLLHS 176 (283)
T ss_pred eehhhHHHh--Cc---ccHHHHHHH-HHhhcCCCceEEEEE
Confidence 874 34333 22 123579998 899999999999886
No 114
>PRK08317 hypothetical protein; Provisional
Probab=98.84 E-value=2.7e-08 Score=89.99 Aligned_cols=106 Identities=23% Similarity=0.233 Sum_probs=80.6
Q ss_pred CCCCCeEEEEecchhHHHHHHHhcC-CCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeE
Q 019699 100 HPNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV 178 (337)
Q Consensus 100 ~~~p~~VLiIG~G~G~~~~~ll~~~-~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDv 178 (337)
...+.+||++|||+|..+..++++. +..+++++|+++..++.+++.... ..++++++.+|....- -..++||+
T Consensus 17 ~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~-----~~~~~~~~~~d~~~~~-~~~~~~D~ 90 (241)
T PRK08317 17 VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAG-----LGPNVEFVRGDADGLP-FPDGSFDA 90 (241)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhC-----CCCceEEEecccccCC-CCCCCceE
Confidence 3566899999999999999998875 567999999999999999987322 2467899999876532 23468999
Q ss_pred EEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (337)
Q Consensus 179 Ii~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~ 218 (337)
|++...-..... ...+++. +.++|+|||.+++.
T Consensus 91 v~~~~~~~~~~~------~~~~l~~-~~~~L~~gG~l~~~ 123 (241)
T PRK08317 91 VRSDRVLQHLED------PARALAE-IARVLRPGGRVVVL 123 (241)
T ss_pred EEEechhhccCC------HHHHHHH-HHHHhcCCcEEEEE
Confidence 998764221101 2467888 79999999988764
No 115
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.84 E-value=3.1e-08 Score=76.08 Aligned_cols=103 Identities=23% Similarity=0.266 Sum_probs=78.8
Q ss_pred eEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEEEeCC
Q 019699 105 TIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLA 184 (337)
Q Consensus 105 ~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~D~~ 184 (337)
+++++|+|.|..+..+++ ....+++++|+++..++.+++..... ..++.+++.+|..++......+||+|+++.+
T Consensus 1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~ 75 (107)
T cd02440 1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAAAAL----LADNVEVLKGDAEELPPEADESFDVIISDPP 75 (107)
T ss_pred CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHhcc----cccceEEEEcChhhhccccCCceEEEEEccc
Confidence 589999999999999988 45689999999999999998532211 2468999999998886534578999999876
Q ss_pred CCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699 185 DPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (337)
Q Consensus 185 dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~ 218 (337)
.... .-....+++. +.+.|+++|.+++.
T Consensus 76 ~~~~-----~~~~~~~l~~-~~~~l~~~g~~~~~ 103 (107)
T cd02440 76 LHHL-----VEDLARFLEE-ARRLLKPGGVLVLT 103 (107)
T ss_pred eeeh-----hhHHHHHHHH-HHHHcCCCCEEEEE
Confidence 3210 1133567777 78899999998764
No 116
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.84 E-value=2.7e-08 Score=100.38 Aligned_cols=105 Identities=15% Similarity=0.150 Sum_probs=79.8
Q ss_pred CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (337)
Q Consensus 101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi 180 (337)
.++.+||+||||+|..+..++++. ..+|+++|+++.+++.|++.... ...+++++.+|..... -..++||+|+
T Consensus 265 ~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvDiS~~~l~~A~~~~~~-----~~~~v~~~~~d~~~~~-~~~~~fD~I~ 337 (475)
T PLN02336 265 KPGQKVLDVGCGIGGGDFYMAENF-DVHVVGIDLSVNMISFALERAIG-----RKCSVEFEVADCTKKT-YPDNSFDVIY 337 (475)
T ss_pred CCCCEEEEEeccCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhhc-----CCCceEEEEcCcccCC-CCCCCEEEEE
Confidence 456799999999999999988876 46899999999999999886532 1357999999976532 1246899999
Q ss_pred EeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (337)
Q Consensus 181 ~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~ 219 (337)
+...-.. -+ -...+++. +++.|+|||.+++..
T Consensus 338 s~~~l~h--~~----d~~~~l~~-~~r~LkpgG~l~i~~ 369 (475)
T PLN02336 338 SRDTILH--IQ----DKPALFRS-FFKWLKPGGKVLISD 369 (475)
T ss_pred ECCcccc--cC----CHHHHHHH-HHHHcCCCeEEEEEE
Confidence 8644211 01 12478888 899999999988753
No 117
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=98.82 E-value=2.3e-08 Score=94.64 Aligned_cols=103 Identities=16% Similarity=0.196 Sum_probs=76.9
Q ss_pred CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (337)
Q Consensus 101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi 180 (337)
.++++||+||||+|..+..+++. ..+|++||+++.+++.+++..... .-++++...|....- .+++||+|+
T Consensus 119 ~~~~~vLDlGcG~G~~~~~la~~--g~~V~avD~s~~ai~~~~~~~~~~-----~l~v~~~~~D~~~~~--~~~~fD~I~ 189 (287)
T PRK12335 119 VKPGKALDLGCGQGRNSLYLALL--GFDVTAVDINQQSLENLQEIAEKE-----NLNIRTGLYDINSAS--IQEEYDFIL 189 (287)
T ss_pred cCCCCEEEeCCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHc-----CCceEEEEechhccc--ccCCccEEE
Confidence 45679999999999999999885 368999999999999999876543 236888888875532 257899999
Q ss_pred EeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEE
Q 019699 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT 217 (337)
Q Consensus 181 ~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~ 217 (337)
+...-... .+ . ....+++. +.++|+|||.+++
T Consensus 190 ~~~vl~~l-~~--~-~~~~~l~~-~~~~LkpgG~~l~ 221 (287)
T PRK12335 190 STVVLMFL-NR--E-RIPAIIKN-MQEHTNPGGYNLI 221 (287)
T ss_pred EcchhhhC-CH--H-HHHHHHHH-HHHhcCCCcEEEE
Confidence 87642210 00 0 12467888 7999999998544
No 118
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.81 E-value=2.7e-08 Score=89.75 Aligned_cols=101 Identities=17% Similarity=0.157 Sum_probs=76.2
Q ss_pred CCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEE
Q 019699 100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (337)
Q Consensus 100 ~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvI 179 (337)
.....+||+||+|+|..+..+++.. .++++||+++++++.|++++.... -.+++++.+|+.+.+.. .++||+|
T Consensus 76 ~~~~~~VLeiG~GsG~~t~~la~~~--~~v~~vd~~~~~~~~a~~~~~~~~----~~~v~~~~~d~~~~~~~-~~~fD~I 148 (212)
T PRK00312 76 LKPGDRVLEIGTGSGYQAAVLAHLV--RRVFSVERIKTLQWEAKRRLKQLG----LHNVSVRHGDGWKGWPA-YAPFDRI 148 (212)
T ss_pred CCCCCEEEEECCCccHHHHHHHHHh--CEEEEEeCCHHHHHHHHHHHHHCC----CCceEEEECCcccCCCc-CCCcCEE
Confidence 3456899999999999988776653 489999999999999999886432 24589999998654332 3689999
Q ss_pred EEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCC
Q 019699 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG 220 (337)
Q Consensus 180 i~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~ 220 (337)
+++...+. + -+. +.+.|+|||.+++..+
T Consensus 149 ~~~~~~~~-------~-----~~~-l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 149 LVTAAAPE-------I-----PRA-LLEQLKEGGILVAPVG 176 (212)
T ss_pred EEccCchh-------h-----hHH-HHHhcCCCcEEEEEEc
Confidence 99864221 1 133 4678999999988754
No 119
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.80 E-value=9e-08 Score=87.52 Aligned_cols=112 Identities=19% Similarity=0.203 Sum_probs=94.4
Q ss_pred CCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhc--CCceeEEE
Q 019699 103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR--KESYDVII 180 (337)
Q Consensus 103 p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~--~~~yDvIi 180 (337)
..-+|+||+|.|....++++..|...+.+||+-..++..|.+...... -++++++..||.+++... +++.|-|.
T Consensus 49 ~pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~----l~Nlri~~~DA~~~l~~~~~~~sl~~I~ 124 (227)
T COG0220 49 APIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELG----LKNLRLLCGDAVEVLDYLIPDGSLDKIY 124 (227)
T ss_pred CcEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcC----CCcEEEEcCCHHHHHHhcCCCCCeeEEE
Confidence 357999999999999999999888999999999999998888765431 238999999999998774 34899999
Q ss_pred EeCCCCCCCCCC--cCCchHHHHHHHhccccCCCceEEEeC
Q 019699 181 GDLADPIEGGPC--YKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (337)
Q Consensus 181 ~D~~dp~~~~p~--~~L~t~ef~~~~~~~~L~p~Gvlv~~~ 219 (337)
+.-+|||--... ..|...+|++. +++.|+|||.+-+.+
T Consensus 125 i~FPDPWpKkRH~KRRl~~~~fl~~-~a~~Lk~gG~l~~aT 164 (227)
T COG0220 125 INFPDPWPKKRHHKRRLTQPEFLKL-YARKLKPGGVLHFAT 164 (227)
T ss_pred EECCCCCCCccccccccCCHHHHHH-HHHHccCCCEEEEEe
Confidence 999999932211 35899999998 899999999998875
No 120
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.80 E-value=1.6e-07 Score=93.79 Aligned_cols=137 Identities=20% Similarity=0.164 Sum_probs=89.5
Q ss_pred CCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHh-hcCCceeE
Q 019699 100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELE-SRKESYDV 178 (337)
Q Consensus 100 ~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~-~~~~~yDv 178 (337)
..+..+||++|+|.|+.+..+++..+..+|+++|+++..++.+++++...+ +. -++++..+|+..... ...++||.
T Consensus 236 ~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g--~~-~~v~~~~~d~~~~~~~~~~~~fD~ 312 (426)
T TIGR00563 236 PQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLG--LT-IKAETKDGDGRGPSQWAENEQFDR 312 (426)
T ss_pred CCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcC--CC-eEEEEeccccccccccccccccCE
Confidence 345689999999999999999886555799999999999999999886432 11 234446667653221 12467999
Q ss_pred EEEeCCC-CCC---CCCCcC--C----------chHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhhc
Q 019699 179 IIGDLAD-PIE---GGPCYK--L----------YTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVF 242 (337)
Q Consensus 179 Ii~D~~d-p~~---~~p~~~--L----------~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~vF 242 (337)
|++|++- ... ..|... . ...++++. +.+.|+|||.++..+.+- .++.-..+++.+-+.+
T Consensus 313 VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~-a~~~LkpgG~lvystcs~----~~~Ene~~v~~~l~~~ 387 (426)
T TIGR00563 313 ILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDA-IWPLLKTGGTLVYATCSV----LPEENSEQIKAFLQEH 387 (426)
T ss_pred EEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHH-HHHhcCCCcEEEEEeCCC----ChhhCHHHHHHHHHhC
Confidence 9999862 210 011100 0 12568888 789999999999776432 2333334445544455
Q ss_pred Cc
Q 019699 243 KY 244 (337)
Q Consensus 243 ~~ 244 (337)
|.
T Consensus 388 ~~ 389 (426)
T TIGR00563 388 PD 389 (426)
T ss_pred CC
Confidence 54
No 121
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.79 E-value=4.6e-08 Score=94.02 Aligned_cols=101 Identities=19% Similarity=0.173 Sum_probs=76.9
Q ss_pred CCCCeEEEEecchhHHHHHHHhcCC-CcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEE
Q 019699 101 PNPKTIFIMGGGEGSTAREILRHKT-VEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (337)
Q Consensus 101 ~~p~~VLiIG~G~G~~~~~ll~~~~-~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvI 179 (337)
.+..+||+||+|+|.++..+++..+ ..+|++||+++++++.|++.+.... -++++++.+|+.+.+... ..||+|
T Consensus 79 ~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g----~~nV~~i~gD~~~~~~~~-~~fD~I 153 (322)
T PRK13943 79 DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLG----IENVIFVCGDGYYGVPEF-APYDVI 153 (322)
T ss_pred CCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcC----CCcEEEEeCChhhccccc-CCccEE
Confidence 4567999999999999999888654 2479999999999999999876432 257999999988765433 579999
Q ss_pred EEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (337)
Q Consensus 180 i~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~ 219 (337)
+++...+. .... +.+.|+|||.+++..
T Consensus 154 i~~~g~~~------------ip~~-~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 154 FVTVGVDE------------VPET-WFTQLKEGGRVIVPI 180 (322)
T ss_pred EECCchHH------------hHHH-HHHhcCCCCEEEEEe
Confidence 99854221 1122 356899999988764
No 122
>PRK06922 hypothetical protein; Provisional
Probab=98.79 E-value=4.1e-08 Score=101.12 Aligned_cols=112 Identities=21% Similarity=0.166 Sum_probs=82.3
Q ss_pred CCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHh-hcCCceeEEE
Q 019699 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELE-SRKESYDVII 180 (337)
Q Consensus 102 ~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~-~~~~~yDvIi 180 (337)
.+.+||+||||+|..+..+++..+..+++++|+++.+++.|++..... ..+++++.+|+.+.-. -.+++||+|+
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~-----g~~ie~I~gDa~dLp~~fedeSFDvVV 492 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNE-----GRSWNVIKGDAINLSSSFEKESVDTIV 492 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhc-----CCCeEEEEcchHhCccccCCCCEEEEE
Confidence 568999999999999988888767789999999999999999875432 3578889999876321 1346899999
Q ss_pred EeCCCCC-------CCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699 181 GDLADPI-------EGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (337)
Q Consensus 181 ~D~~dp~-------~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~ 219 (337)
+...-++ .......-....+++. +.++|+|||.+++..
T Consensus 493 sn~vLH~L~syIp~~g~~f~~edl~kiLre-I~RVLKPGGrLII~D 537 (677)
T PRK06922 493 YSSILHELFSYIEYEGKKFNHEVIKKGLQS-AYEVLKPGGRIIIRD 537 (677)
T ss_pred EchHHHhhhhhcccccccccHHHHHHHHHH-HHHHcCCCcEEEEEe
Confidence 8753211 0000001123578888 799999999998864
No 123
>PTZ00146 fibrillarin; Provisional
Probab=98.79 E-value=1.9e-07 Score=88.05 Aligned_cols=151 Identities=17% Similarity=0.186 Sum_probs=95.1
Q ss_pred CCCCeEEEEecchhHHHHHHHhcC-CCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHH--HhhcCCcee
Q 019699 101 PNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE--LESRKESYD 177 (337)
Q Consensus 101 ~~p~~VLiIG~G~G~~~~~ll~~~-~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~--l~~~~~~yD 177 (337)
.+..+||++|||+|.++..+++.- +..+|.+||+++++.+-..+... ..+++..+.+|++.- .....+.+|
T Consensus 131 kpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak------~r~NI~~I~~Da~~p~~y~~~~~~vD 204 (293)
T PTZ00146 131 KPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAK------KRPNIVPIIEDARYPQKYRMLVPMVD 204 (293)
T ss_pred CCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhh------hcCCCEEEECCccChhhhhcccCCCC
Confidence 455799999999999999999874 24589999999875533222111 125788999998642 111235799
Q ss_pred EEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCCCCcCC--C-hhHHHHHHHHHhhh-cCceeEEEeecc
Q 019699 178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFS--H-TEVFSCIYNTLRQV-FKYVVPYSAHIP 253 (337)
Q Consensus 178 vIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~--~-~~~~~~i~~~l~~v-F~~v~~~~~~vP 253 (337)
+|++|...|+ . ...+..+ +++.|+|+|.|++-+....... . .+.+++-.+.|++. |..+... .++
T Consensus 205 vV~~Dva~pd--q------~~il~~n-a~r~LKpGG~~vI~ika~~id~g~~pe~~f~~ev~~L~~~GF~~~e~v--~L~ 273 (293)
T PTZ00146 205 VIFADVAQPD--Q------ARIVALN-AQYFLKNGGHFIISIKANCIDSTAKPEVVFASEVQKLKKEGLKPKEQL--TLE 273 (293)
T ss_pred EEEEeCCCcc--h------HHHHHHH-HHHhccCCCEEEEEEeccccccCCCHHHHHHHHHHHHHHcCCceEEEE--ecC
Confidence 9999996543 1 1234455 6889999999887432111111 1 22344445778877 8765543 345
Q ss_pred ccCCceEEEEEecCC
Q 019699 254 SFADTWGWIMASDSP 268 (337)
Q Consensus 254 ~~~~~~~~~~as~~p 268 (337)
.|.....++++..++
T Consensus 274 Py~~~h~~v~~~~~~ 288 (293)
T PTZ00146 274 PFERDHAVVIGVYRP 288 (293)
T ss_pred CccCCcEEEEEEEcC
Confidence 554445566665443
No 124
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.78 E-value=1.9e-07 Score=84.46 Aligned_cols=149 Identities=17% Similarity=0.215 Sum_probs=104.6
Q ss_pred CCCCeEEEEecchhHHHHHHHh-cCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhc-----CC
Q 019699 101 PNPKTIFIMGGGEGSTAREILR-HKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR-----KE 174 (337)
Q Consensus 101 ~~p~~VLiIG~G~G~~~~~ll~-~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~-----~~ 174 (337)
-+|+++|+||.-+|..+..++. .++..+|+++|+|++..+++.++..... -+.+++++++++.+-|.+. .+
T Consensus 72 ~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~ag---v~~KI~~i~g~a~esLd~l~~~~~~~ 148 (237)
T KOG1663|consen 72 LNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAG---VDHKITFIEGPALESLDELLADGESG 148 (237)
T ss_pred hCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhcc---ccceeeeeecchhhhHHHHHhcCCCC
Confidence 4789999999999988765554 4778899999999999999977655432 3578999999998877552 57
Q ss_pred ceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC----C---CCCcCCChhHHHHH---HHHHhhhcCc
Q 019699 175 SYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA----G---PAGIFSHTEVFSCI---YNTLRQVFKY 244 (337)
Q Consensus 175 ~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~----~---~p~~~~~~~~~~~i---~~~l~~vF~~ 244 (337)
+||.+|+|..- ..|. .+|.. +-+.|++||++++.- | .|. ......-..+ ++.-+.....
T Consensus 149 tfDfaFvDadK--------~nY~-~y~e~-~l~Llr~GGvi~~DNvl~~G~v~~p~-~~~~~~~~~~r~~~~~n~~l~~D 217 (237)
T KOG1663|consen 149 TFDFAFVDADK--------DNYS-NYYER-LLRLLRVGGVIVVDNVLWPGVVADPD-VNTPVRGRSIREALNLNKKLARD 217 (237)
T ss_pred ceeEEEEccch--------HHHH-HHHHH-HHhhcccccEEEEeccccCCcccCcc-cCCCcchhhhhhhhhhhhHhccC
Confidence 89999999752 3344 78888 678999999998742 2 221 1111111222 2444455666
Q ss_pred eeEEEeeccccCCceEEEEEec
Q 019699 245 VVPYSAHIPSFADTWGWIMASD 266 (337)
Q Consensus 245 v~~~~~~vP~~~~~~~~~~as~ 266 (337)
.+.|...+|.++| ..+|.+
T Consensus 218 ~rV~~s~~~igdG---~~i~~k 236 (237)
T KOG1663|consen 218 PRVYISLLPIGDG---ITICRK 236 (237)
T ss_pred cceeeEeeeccCc---eeeecc
Confidence 7777777787655 345544
No 125
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=98.76 E-value=5.8e-08 Score=88.58 Aligned_cols=104 Identities=17% Similarity=0.178 Sum_probs=80.7
Q ss_pred CCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEEE
Q 019699 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG 181 (337)
Q Consensus 102 ~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~ 181 (337)
...+||+||||+|.++..+.+. ..+++++|+++.+++.+++.+... ..+++++..|..++.....++||+|++
T Consensus 48 ~~~~vLdiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~fD~Ii~ 120 (233)
T PRK05134 48 FGKRVLDVGCGGGILSESMARL--GADVTGIDASEENIEVARLHALES-----GLKIDYRQTTAEELAAEHPGQFDVVTC 120 (233)
T ss_pred CCCeEEEeCCCCCHHHHHHHHc--CCeEEEEcCCHHHHHHHHHHHHHc-----CCceEEEecCHHHhhhhcCCCccEEEE
Confidence 4679999999999999988885 368999999999999999887543 235788889988876555578999998
Q ss_pred eCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699 182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (337)
Q Consensus 182 D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~ 219 (337)
...-.. .+ ...++++. +.+.|+|||.+++..
T Consensus 121 ~~~l~~--~~----~~~~~l~~-~~~~L~~gG~l~v~~ 151 (233)
T PRK05134 121 MEMLEH--VP----DPASFVRA-CAKLVKPGGLVFFST 151 (233)
T ss_pred hhHhhc--cC----CHHHHHHH-HHHHcCCCcEEEEEe
Confidence 653221 11 12467787 799999999988764
No 126
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=98.76 E-value=4.9e-08 Score=96.06 Aligned_cols=101 Identities=23% Similarity=0.373 Sum_probs=77.7
Q ss_pred CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (337)
Q Consensus 101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi 180 (337)
.++.+||+||||+|.++..++++.+ .+|+++|+++++++.|++... +..+++...|..+. .++||+|+
T Consensus 166 ~~g~rVLDIGcG~G~~a~~la~~~g-~~V~giDlS~~~l~~A~~~~~-------~l~v~~~~~D~~~l----~~~fD~Iv 233 (383)
T PRK11705 166 KPGMRVLDIGCGWGGLARYAAEHYG-VSVVGVTISAEQQKLAQERCA-------GLPVEIRLQDYRDL----NGQFDRIV 233 (383)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHhc-------cCeEEEEECchhhc----CCCCCEEE
Confidence 4567999999999999999998764 689999999999999998753 12478888887653 46899998
Q ss_pred EeCC-CCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699 181 GDLA-DPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (337)
Q Consensus 181 ~D~~-dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~ 219 (337)
+-.. ... +. -.-..+++. +.++|+|||.++++.
T Consensus 234 s~~~~ehv--g~---~~~~~~l~~-i~r~LkpGG~lvl~~ 267 (383)
T PRK11705 234 SVGMFEHV--GP---KNYRTYFEV-VRRCLKPDGLFLLHT 267 (383)
T ss_pred EeCchhhC--Ch---HHHHHHHHH-HHHHcCCCcEEEEEE
Confidence 7542 211 11 112478898 899999999998864
No 127
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=98.75 E-value=7.7e-08 Score=92.58 Aligned_cols=105 Identities=16% Similarity=0.136 Sum_probs=75.0
Q ss_pred CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (337)
Q Consensus 101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi 180 (337)
..+++||+||||+|..+..+++.. ...|++||+++.++..++..-.... .+++++++.+|..+. .. .++||+|+
T Consensus 121 l~g~~VLDIGCG~G~~~~~la~~g-~~~V~GiD~S~~~l~q~~a~~~~~~---~~~~i~~~~~d~e~l-p~-~~~FD~V~ 194 (322)
T PRK15068 121 LKGRTVLDVGCGNGYHMWRMLGAG-AKLVVGIDPSQLFLCQFEAVRKLLG---NDQRAHLLPLGIEQL-PA-LKAFDTVF 194 (322)
T ss_pred CCCCEEEEeccCCcHHHHHHHHcC-CCEEEEEcCCHHHHHHHHHHHHhcC---CCCCeEEEeCCHHHC-CC-cCCcCEEE
Confidence 356899999999999999999874 4579999999988864332111110 146899999987654 32 57899999
Q ss_pred EeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (337)
Q Consensus 181 ~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~ 218 (337)
+-..-..... ...+++. +++.|+|||.+++.
T Consensus 195 s~~vl~H~~d------p~~~L~~-l~~~LkpGG~lvl~ 225 (322)
T PRK15068 195 SMGVLYHRRS------PLDHLKQ-LKDQLVPGGELVLE 225 (322)
T ss_pred ECChhhccCC------HHHHHHH-HHHhcCCCcEEEEE
Confidence 8543111011 2468888 89999999999875
No 128
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=98.74 E-value=6e-08 Score=92.44 Aligned_cols=106 Identities=12% Similarity=0.123 Sum_probs=78.9
Q ss_pred CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (337)
Q Consensus 101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi 180 (337)
.+..+||+||||+|.++.+++++.|..+++++|+ |.+++.++++..... -.+|++++.+|..+. .. ..+|+|+
T Consensus 148 ~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~g---l~~rv~~~~~d~~~~--~~-~~~D~v~ 220 (306)
T TIGR02716 148 DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKG---VADRMRGIAVDIYKE--SY-PEADAVL 220 (306)
T ss_pred CCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCC---ccceEEEEecCccCC--CC-CCCCEEE
Confidence 4558999999999999999999877789999998 789999998875432 246899999997642 12 3479987
Q ss_pred EeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (337)
Q Consensus 181 ~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~ 218 (337)
+...-... .+ -.....++. +.+.|+|||.+++.
T Consensus 221 ~~~~lh~~-~~---~~~~~il~~-~~~~L~pgG~l~i~ 253 (306)
T TIGR02716 221 FCRILYSA-NE---QLSTIMCKK-AFDAMRSGGRLLIL 253 (306)
T ss_pred eEhhhhcC-Ch---HHHHHHHHH-HHHhcCCCCEEEEE
Confidence 65431110 11 112457888 79999999988765
No 129
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=98.73 E-value=6.2e-08 Score=90.86 Aligned_cols=95 Identities=19% Similarity=0.295 Sum_probs=71.2
Q ss_pred CCCCeEEEEecchhHHHHHHHhcCCC---cEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCcee
Q 019699 101 PNPKTIFIMGGGEGSTAREILRHKTV---EKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYD 177 (337)
Q Consensus 101 ~~p~~VLiIG~G~G~~~~~ll~~~~~---~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yD 177 (337)
....+||+||||+|..+..+++..+. .+++++|+++.+++.|++.. +++++.++|+.+. .-..++||
T Consensus 84 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~---------~~~~~~~~d~~~l-p~~~~sfD 153 (272)
T PRK11088 84 EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY---------PQVTFCVASSHRL-PFADQSLD 153 (272)
T ss_pred CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC---------CCCeEEEeecccC-CCcCCcee
Confidence 34578999999999999998875332 37999999999999998742 5678899997653 22347899
Q ss_pred EEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699 178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (337)
Q Consensus 178 vIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~ 219 (337)
+|++-.. | .+++. ++++|+|||.+++-.
T Consensus 154 ~I~~~~~------~-------~~~~e-~~rvLkpgG~li~~~ 181 (272)
T PRK11088 154 AIIRIYA------P-------CKAEE-LARVVKPGGIVITVT 181 (272)
T ss_pred EEEEecC------C-------CCHHH-HHhhccCCCEEEEEe
Confidence 9996432 2 12355 678899999998764
No 130
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=98.72 E-value=9.3e-08 Score=86.46 Aligned_cols=106 Identities=19% Similarity=0.164 Sum_probs=81.1
Q ss_pred CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (337)
Q Consensus 101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi 180 (337)
..+.+||+||||+|.++..+++.. .+++++|+++.+++.+++.+.... ..++++..+|+.++.....++||+|+
T Consensus 44 ~~~~~vLdlG~G~G~~~~~l~~~~--~~v~~iD~s~~~~~~a~~~~~~~~----~~~~~~~~~d~~~~~~~~~~~~D~i~ 117 (224)
T TIGR01983 44 LFGLRVLDVGCGGGLLSEPLARLG--ANVTGIDASEENIEVAKLHAKKDP----LLKIEYRCTSVEDLAEKGAKSFDVVT 117 (224)
T ss_pred CCCCeEEEECCCCCHHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHHcC----CCceEEEeCCHHHhhcCCCCCccEEE
Confidence 347899999999999999888753 469999999999999998876431 12688999999888655457899999
Q ss_pred EeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (337)
Q Consensus 181 ~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~ 219 (337)
+...-..... ...+++. +.+.|++||.+++..
T Consensus 118 ~~~~l~~~~~------~~~~l~~-~~~~L~~gG~l~i~~ 149 (224)
T TIGR01983 118 CMEVLEHVPD------PQAFIRA-CAQLLKPGGILFFST 149 (224)
T ss_pred ehhHHHhCCC------HHHHHHH-HHHhcCCCcEEEEEe
Confidence 8643211111 2467888 799999999887654
No 131
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.71 E-value=8.3e-08 Score=87.19 Aligned_cols=110 Identities=19% Similarity=0.299 Sum_probs=79.1
Q ss_pred CCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccC---C--------------------------
Q 019699 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKE---A-------------------------- 152 (337)
Q Consensus 102 ~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~---~-------------------------- 152 (337)
.++.+|+|||-.|.++..++++++...|.+||||+..|+.|+++...... .
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a~ 137 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRAF 137 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccccc
Confidence 57899999999999999999999889999999999999999998654210 0
Q ss_pred ---------CCCCCeEEEEccHHHHHhhcCCceeEEEEeCCCCCCC---CCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699 153 ---------FSDPRLELVINDARAELESRKESYDVIIGDLADPIEG---GPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (337)
Q Consensus 153 ---------~~d~rv~v~~~D~~~~l~~~~~~yDvIi~D~~dp~~~---~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~ 218 (337)
+...+..+-.. +||.....+||+|++=+-.-|-. +- ..| ..||+. +.++|.|||+|++.
T Consensus 138 t~~~p~n~~f~~~n~vle~~---dfl~~~~~~fDiIlcLSiTkWIHLNwgD-~GL--~~ff~k-is~ll~pgGiLvvE 208 (288)
T KOG2899|consen 138 TTDFPDNVWFQKENYVLESD---DFLDMIQPEFDIILCLSITKWIHLNWGD-DGL--RRFFRK-ISSLLHPGGILVVE 208 (288)
T ss_pred cccCCcchhcccccEEEecc---hhhhhccccccEEEEEEeeeeEeccccc-HHH--HHHHHH-HHHhhCcCcEEEEc
Confidence 00011112222 34444457899999876533310 00 122 579999 89999999999986
No 132
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.70 E-value=1.9e-07 Score=89.61 Aligned_cols=104 Identities=13% Similarity=0.172 Sum_probs=79.5
Q ss_pred CCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEEE
Q 019699 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG 181 (337)
Q Consensus 102 ~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~ 181 (337)
.+.+||++|||+|.++..++++ ..+|++||+++.+++.|+++...++ -++++++.+|+.++.....++||+|++
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~--~~~V~gvD~s~~av~~A~~n~~~~~----l~~v~~~~~D~~~~~~~~~~~~D~Vv~ 246 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATP--GMQLTGIEISAEAIACAKQSAAELG----LTNVQFQALDSTQFATAQGEVPDLVLV 246 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHcC----CCceEEEEcCHHHHHHhcCCCCeEEEE
Confidence 4689999999999999999985 3789999999999999999876542 257999999999987644457999999
Q ss_pred eCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCC
Q 019699 182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGP 221 (337)
Q Consensus 182 D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~ 221 (337)
|++.. +. ..+..+. + ..++|++++.+-+.+
T Consensus 247 dPPr~---G~-----~~~~~~~-l-~~~~~~~ivyvsc~p 276 (315)
T PRK03522 247 NPPRR---GI-----GKELCDY-L-SQMAPRFILYSSCNA 276 (315)
T ss_pred CCCCC---Cc-----cHHHHHH-H-HHcCCCeEEEEECCc
Confidence 97621 21 1233343 3 347788888776643
No 133
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.69 E-value=1.2e-07 Score=93.17 Aligned_cols=100 Identities=23% Similarity=0.278 Sum_probs=81.3
Q ss_pred CeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEEEeC
Q 019699 104 KTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDL 183 (337)
Q Consensus 104 ~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~D~ 183 (337)
.+||++++|+|..+..+++..+..+|+++|+|+..++.+++++..+. -.+++++.+|+..++.. .++||+|++|+
T Consensus 59 ~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~----~~~~~v~~~Da~~~l~~-~~~fD~V~lDP 133 (382)
T PRK04338 59 ESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNG----LENEKVFNKDANALLHE-ERKFDVVDIDP 133 (382)
T ss_pred CEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhC----CCceEEEhhhHHHHHhh-cCCCCEEEECC
Confidence 58999999999999998876556799999999999999999987653 23567999999998864 46799999998
Q ss_pred CCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699 184 ADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (337)
Q Consensus 184 ~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~ 219 (337)
+ . .+ .+|++. +-+.++++|++.+-+
T Consensus 134 ~-G---s~------~~~l~~-al~~~~~~gilyvSA 158 (382)
T PRK04338 134 F-G---SP------APFLDS-AIRSVKRGGLLCVTA 158 (382)
T ss_pred C-C---Cc------HHHHHH-HHHHhcCCCEEEEEe
Confidence 6 1 22 367776 457789999988753
No 134
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.69 E-value=2.1e-07 Score=93.32 Aligned_cols=103 Identities=15% Similarity=0.179 Sum_probs=79.4
Q ss_pred CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhh---cCCcee
Q 019699 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES---RKESYD 177 (337)
Q Consensus 101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~---~~~~yD 177 (337)
.+..+||++|||+|.++..+++.. .+|++||+++.+++.|++++..+. -.+++++.+|+.+++.. ..++||
T Consensus 296 ~~~~~VLDlgcGtG~~sl~la~~~--~~V~gvD~s~~al~~A~~n~~~~~----~~~v~~~~~d~~~~l~~~~~~~~~fD 369 (443)
T PRK13168 296 QPGDRVLDLFCGLGNFTLPLARQA--AEVVGVEGVEAMVERARENARRNG----LDNVTFYHANLEEDFTDQPWALGGFD 369 (443)
T ss_pred CCCCEEEEEeccCCHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcC----CCceEEEEeChHHhhhhhhhhcCCCC
Confidence 345799999999999999998863 689999999999999999876542 24699999999887743 235799
Q ss_pred EEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCC
Q 019699 178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG 220 (337)
Q Consensus 178 vIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~ 220 (337)
+|++|++-. +. .+..+. +. .|++++++.+.++
T Consensus 370 ~Vi~dPPr~---g~------~~~~~~-l~-~~~~~~ivyvSCn 401 (443)
T PRK13168 370 KVLLDPPRA---GA------AEVMQA-LA-KLGPKRIVYVSCN 401 (443)
T ss_pred EEEECcCCc---Ch------HHHHHH-HH-hcCCCeEEEEEeC
Confidence 999998632 21 244455 44 3799998888764
No 135
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=98.69 E-value=1.7e-08 Score=92.76 Aligned_cols=102 Identities=19% Similarity=0.334 Sum_probs=74.3
Q ss_pred CCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCC---CeEEEEccHHHHHhhcCCceeEE
Q 019699 103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDP---RLELVINDARAELESRKESYDVI 179 (337)
Q Consensus 103 p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~---rv~v~~~D~~~~l~~~~~~yDvI 179 (337)
.++||++|||+|.+...+++.. ++|+++|+.+++|++|+++-... ..++.+ |+++...|+.. ..++||+|
T Consensus 90 g~~ilDvGCGgGLLSepLArlg--a~V~GID~s~~~V~vA~~h~~~d-P~~~~~~~y~l~~~~~~~E~----~~~~fDaV 162 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLG--AQVTGIDASDDMVEVANEHKKMD-PVLEGAIAYRLEYEDTDVEG----LTGKFDAV 162 (282)
T ss_pred CceEEEeccCccccchhhHhhC--CeeEeecccHHHHHHHHHhhhcC-chhccccceeeehhhcchhh----ccccccee
Confidence 4789999999999999999863 89999999999999999993221 111111 56666666543 34569999
Q ss_pred EEeC-CCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699 180 IGDL-ADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (337)
Q Consensus 180 i~D~-~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~ 219 (337)
++-= ..+.. .| .+|.+. +.++|+|+|.+++-.
T Consensus 163 vcsevleHV~-dp------~~~l~~-l~~~lkP~G~lfitt 195 (282)
T KOG1270|consen 163 VCSEVLEHVK-DP------QEFLNC-LSALLKPNGRLFITT 195 (282)
T ss_pred eeHHHHHHHh-CH------HHHHHH-HHHHhCCCCceEeee
Confidence 8753 22221 22 588887 899999999988753
No 136
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=98.68 E-value=1.3e-07 Score=85.14 Aligned_cols=94 Identities=17% Similarity=0.224 Sum_probs=69.3
Q ss_pred CCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEE
Q 019699 100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (337)
Q Consensus 100 ~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvI 179 (337)
.+++.+||+||||+|..+..+.+..+..++++||+++++++.|++++ ++++++.+|+.+. ...++||+|
T Consensus 41 ~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~---------~~~~~~~~d~~~~--~~~~sfD~V 109 (204)
T TIGR03587 41 LPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL---------PNINIIQGSLFDP--FKDNFFDLV 109 (204)
T ss_pred cCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC---------CCCcEEEeeccCC--CCCCCEEEE
Confidence 45678999999999999999988755679999999999999999864 3567888887762 235789999
Q ss_pred EEeCCCCCCCCCCcCCchHHHHHHHhcccc
Q 019699 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRL 209 (337)
Q Consensus 180 i~D~~dp~~~~p~~~L~t~ef~~~~~~~~L 209 (337)
++...-... .| . .-..+++. +.+.+
T Consensus 110 ~~~~vL~hl-~p-~--~~~~~l~e-l~r~~ 134 (204)
T TIGR03587 110 LTKGVLIHI-NP-D--NLPTAYRE-LYRCS 134 (204)
T ss_pred EECChhhhC-CH-H--HHHHHHHH-HHhhc
Confidence 987642110 11 1 12356676 56666
No 137
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.68 E-value=4.9e-07 Score=90.32 Aligned_cols=103 Identities=17% Similarity=0.191 Sum_probs=80.3
Q ss_pred CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhc---CCcee
Q 019699 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR---KESYD 177 (337)
Q Consensus 101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~---~~~yD 177 (337)
.+..+||++|||.|.++..+++. ..+|++||+++.+++.|++++..+. -.+++++.+|+.+++... ..+||
T Consensus 291 ~~~~~vLDl~cG~G~~sl~la~~--~~~V~~vE~~~~av~~a~~n~~~~~----~~nv~~~~~d~~~~l~~~~~~~~~~D 364 (431)
T TIGR00479 291 QGEELVVDAYCGVGTFTLPLAKQ--AKSVVGIEVVPESVEKAQQNAELNG----IANVEFLAGTLETVLPKQPWAGQIPD 364 (431)
T ss_pred CCCCEEEEcCCCcCHHHHHHHHh--CCEEEEEEcCHHHHHHHHHHHHHhC----CCceEEEeCCHHHHHHHHHhcCCCCC
Confidence 44579999999999999999886 3689999999999999999987542 257999999999887542 35799
Q ss_pred EEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699 178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (337)
Q Consensus 178 vIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~ 219 (337)
+|++|++.. +. ..++++. +. .|+|++++.+.+
T Consensus 365 ~vi~dPPr~---G~-----~~~~l~~-l~-~l~~~~ivyvsc 396 (431)
T TIGR00479 365 VLLLDPPRK---GC-----AAEVLRT-II-ELKPERIVYVSC 396 (431)
T ss_pred EEEECcCCC---CC-----CHHHHHH-HH-hcCCCEEEEEcC
Confidence 999998631 21 2466665 44 488999876654
No 138
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.67 E-value=9.3e-08 Score=96.48 Aligned_cols=102 Identities=19% Similarity=0.204 Sum_probs=77.8
Q ss_pred CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHH-HhhcCCceeEE
Q 019699 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE-LESRKESYDVI 179 (337)
Q Consensus 101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~-l~~~~~~yDvI 179 (337)
.+.++||+||||+|..+..++++. .+|++||+++.+++.+++.... .++++++.+|+... +.-..++||+|
T Consensus 36 ~~~~~vLDlGcG~G~~~~~la~~~--~~v~giD~s~~~l~~a~~~~~~------~~~i~~~~~d~~~~~~~~~~~~fD~I 107 (475)
T PLN02336 36 YEGKSVLELGAGIGRFTGELAKKA--GQVIALDFIESVIKKNESINGH------YKNVKFMCADVTSPDLNISDGSVDLI 107 (475)
T ss_pred cCCCEEEEeCCCcCHHHHHHHhhC--CEEEEEeCCHHHHHHHHHHhcc------CCceEEEEecccccccCCCCCCEEEE
Confidence 345799999999999999999863 6899999999999987763221 36789999998642 22234789999
Q ss_pred EEeCCCCCCCCCCcCCc---hHHHHHHHhccccCCCceEEEe
Q 019699 180 IGDLADPIEGGPCYKLY---TKSFYEFVVKPRLNPEGIFVTQ 218 (337)
Q Consensus 180 i~D~~dp~~~~p~~~L~---t~ef~~~~~~~~L~p~Gvlv~~ 218 (337)
++...-. ++. ..++++. +++.|+|||.+++.
T Consensus 108 ~~~~~l~-------~l~~~~~~~~l~~-~~r~Lk~gG~l~~~ 141 (475)
T PLN02336 108 FSNWLLM-------YLSDKEVENLAER-MVKWLKVGGYIFFR 141 (475)
T ss_pred ehhhhHH-------hCCHHHHHHHHHH-HHHhcCCCeEEEEE
Confidence 9986422 222 2578888 79999999999874
No 139
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.67 E-value=3.9e-07 Score=89.50 Aligned_cols=102 Identities=10% Similarity=0.136 Sum_probs=80.4
Q ss_pred CCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEEE
Q 019699 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG 181 (337)
Q Consensus 102 ~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~ 181 (337)
.+++||++|||+|.++.+++.. ..+|++||+|+..++.|+++...+. -++++++.+|+.+++....++||+|++
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~~--~~~v~~vE~~~~av~~a~~N~~~~~----~~~~~~~~~d~~~~~~~~~~~~D~vi~ 306 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAGP--DTQLTGIEIESEAIACAQQSAQMLG----LDNLSFAALDSAKFATAQMSAPELVLV 306 (374)
T ss_pred CCCEEEEccCCccHHHHHHhhc--CCeEEEEECCHHHHHHHHHHHHHcC----CCcEEEEECCHHHHHHhcCCCCCEEEE
Confidence 4579999999999999999864 3789999999999999999986543 137999999999988654356999999
Q ss_pred eCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699 182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (337)
Q Consensus 182 D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~ 219 (337)
|++.. |. ..++.+. +. .++|++++.+.+
T Consensus 307 DPPr~---G~-----~~~~l~~-l~-~~~p~~ivyvsc 334 (374)
T TIGR02085 307 NPPRR---GI-----GKELCDY-LS-QMAPKFILYSSC 334 (374)
T ss_pred CCCCC---CC-----cHHHHHH-HH-hcCCCeEEEEEe
Confidence 98631 21 2456665 43 589999888765
No 140
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=98.66 E-value=1.9e-07 Score=89.43 Aligned_cols=103 Identities=18% Similarity=0.140 Sum_probs=74.3
Q ss_pred CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHH---HhhhhhccCCCCCCCeEEEEccHHHHHhhcCCcee
Q 019699 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFC---KSYLVVNKEAFSDPRLELVINDARAELESRKESYD 177 (337)
Q Consensus 101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a---~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yD 177 (337)
.+.++||+||||+|..+..+++.. ...|++||+++.++..+ +++.. .++++.+...|..+. .. ..+||
T Consensus 120 ~~g~~VLDvGCG~G~~~~~~~~~g-~~~v~GiDpS~~ml~q~~~~~~~~~------~~~~v~~~~~~ie~l-p~-~~~FD 190 (314)
T TIGR00452 120 LKGRTILDVGCGSGYHMWRMLGHG-AKSLVGIDPTVLFLCQFEAVRKLLD------NDKRAILEPLGIEQL-HE-LYAFD 190 (314)
T ss_pred CCCCEEEEeccCCcHHHHHHHHcC-CCEEEEEcCCHHHHHHHHHHHHHhc------cCCCeEEEECCHHHC-CC-CCCcC
Confidence 456899999999999998888764 46899999999988653 33321 246788888876543 22 35799
Q ss_pred EEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699 178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (337)
Q Consensus 178 vIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~ 219 (337)
+|++...-.....| .++++. +++.|+|||.+++..
T Consensus 191 ~V~s~gvL~H~~dp------~~~L~e-l~r~LkpGG~Lvlet 225 (314)
T TIGR00452 191 TVFSMGVLYHRKSP------LEHLKQ-LKHQLVIKGELVLET 225 (314)
T ss_pred EEEEcchhhccCCH------HHHHHH-HHHhcCCCCEEEEEE
Confidence 99987542211112 468888 899999999998763
No 141
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=98.66 E-value=2.6e-07 Score=84.70 Aligned_cols=108 Identities=22% Similarity=0.234 Sum_probs=79.7
Q ss_pred CCCCeEEEEecchhHHHHHHHhcCCC------cEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCC
Q 019699 101 PNPKTIFIMGGGEGSTAREILRHKTV------EKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKE 174 (337)
Q Consensus 101 ~~p~~VLiIG~G~G~~~~~ll~~~~~------~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~ 174 (337)
.+..++|+++||+|-++..+++|-+. .+|+++||+|.++..+++.-.. ..-..++++.++.+||.+. .-.+.
T Consensus 99 ~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~-~~l~~~~~~~w~~~dAE~L-pFdd~ 176 (296)
T KOG1540|consen 99 GKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKK-RPLKASSRVEWVEGDAEDL-PFDDD 176 (296)
T ss_pred CCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhh-cCCCcCCceEEEeCCcccC-CCCCC
Confidence 44579999999999999999998655 7999999999999999987522 1223467899999998653 34457
Q ss_pred ceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEE
Q 019699 175 SYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT 217 (337)
Q Consensus 175 ~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~ 217 (337)
.||...+...--. -+ + -..-++. +.|.|||||.+.+
T Consensus 177 s~D~yTiafGIRN--~t--h--~~k~l~E-AYRVLKpGGrf~c 212 (296)
T KOG1540|consen 177 SFDAYTIAFGIRN--VT--H--IQKALRE-AYRVLKPGGRFSC 212 (296)
T ss_pred cceeEEEecceec--CC--C--HHHHHHH-HHHhcCCCcEEEE
Confidence 8998877643111 01 1 1245666 7899999998864
No 142
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=98.66 E-value=1.7e-07 Score=91.77 Aligned_cols=101 Identities=22% Similarity=0.196 Sum_probs=84.8
Q ss_pred CCeEEEEecchhHHHHHHHhc-CCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEEE
Q 019699 103 PKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG 181 (337)
Q Consensus 103 p~~VLiIG~G~G~~~~~ll~~-~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~ 181 (337)
+.+|||+.+|+|..+.++++. .+..+|+++|+|+..++.++++...+. -.+++++.+|+..++....++||+|++
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~----~~~~~v~~~Da~~~l~~~~~~fDvIdl 120 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNS----VENIEVPNEDAANVLRYRNRKFHVIDI 120 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhC----CCcEEEEchhHHHHHHHhCCCCCEEEe
Confidence 358999999999999999987 356899999999999999999987763 236899999999999876678999999
Q ss_pred eCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699 182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (337)
Q Consensus 182 D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~ 218 (337)
|++. .| .+|++. +-+.++++|++.+-
T Consensus 121 DPfG----s~------~~fld~-al~~~~~~glL~vT 146 (374)
T TIGR00308 121 DPFG----TP------APFVDS-AIQASAERGLLLVT 146 (374)
T ss_pred CCCC----Cc------HHHHHH-HHHhcccCCEEEEE
Confidence 9852 22 268887 67889999988776
No 143
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.64 E-value=6e-08 Score=87.35 Aligned_cols=102 Identities=23% Similarity=0.318 Sum_probs=71.1
Q ss_pred CCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCe-EEEEccHHHHHhhcCCceeEEE
Q 019699 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRL-ELVINDARAELESRKESYDVII 180 (337)
Q Consensus 102 ~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv-~v~~~D~~~~l~~~~~~yDvIi 180 (337)
...++|++|+|-|.++..++.+. ..+|++||..+..++.|++++... .+++ +++..-..+|.. ...+||+|-
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~-f~~VDlVEp~~~Fl~~a~~~l~~~-----~~~v~~~~~~gLQ~f~P-~~~~YDlIW 127 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPV-FDEVDLVEPVEKFLEQAKEYLGKD-----NPRVGEFYCVGLQDFTP-EEGKYDLIW 127 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC--SEEEEEES-HHHHHHHHHHTCCG-----GCCEEEEEES-GGG-----TT-EEEEE
T ss_pred CcceEEecccccchhHHHHHHHh-cCEeEEeccCHHHHHHHHHHhccc-----CCCcceEEecCHhhccC-CCCcEeEEE
Confidence 45899999999999999887654 589999999999999999987642 2455 455554455543 346899999
Q ss_pred EeCCCCCCCCCCcCCch---HHHHHHHhccccCCCceEEEe
Q 019699 181 GDLADPIEGGPCYKLYT---KSFYEFVVKPRLNPEGIFVTQ 218 (337)
Q Consensus 181 ~D~~dp~~~~p~~~L~t---~ef~~~~~~~~L~p~Gvlv~~ 218 (337)
+-..- .+|.. .+|++. |++.|+|+|++++-
T Consensus 128 ~QW~l-------ghLTD~dlv~fL~R-Ck~~L~~~G~IvvK 160 (218)
T PF05891_consen 128 IQWCL-------GHLTDEDLVAFLKR-CKQALKPNGVIVVK 160 (218)
T ss_dssp EES-G-------GGS-HHHHHHHHHH-HHHHEEEEEEEEEE
T ss_pred ehHhh-------ccCCHHHHHHHHHH-HHHhCcCCcEEEEE
Confidence 98642 35544 468999 79999999999984
No 144
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.61 E-value=3.2e-07 Score=87.48 Aligned_cols=111 Identities=14% Similarity=0.112 Sum_probs=76.3
Q ss_pred CCCCeEEEEecchhHHHHHHHhcCC-CcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCC----c
Q 019699 101 PNPKTIFIMGGGEGSTAREILRHKT-VEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKE----S 175 (337)
Q Consensus 101 ~~p~~VLiIG~G~G~~~~~ll~~~~-~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~----~ 175 (337)
+.+.+||++|||+|..++.+++... ..++++||+++++++.|++.+... +..-+++.+.+|..+.+.-... .
T Consensus 62 ~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~---~p~~~v~~i~gD~~~~~~~~~~~~~~~ 138 (301)
T TIGR03438 62 GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAAD---YPQLEVHGICADFTQPLALPPEPAAGR 138 (301)
T ss_pred CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhh---CCCceEEEEEEcccchhhhhcccccCC
Confidence 4568999999999999999998743 468999999999999998876531 1123466688998764422211 2
Q ss_pred eeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699 176 YDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (337)
Q Consensus 176 yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~ 219 (337)
..+++++++-... + .--...|++. ++++|+|||.+++-.
T Consensus 139 ~~~~~~gs~~~~~--~--~~e~~~~L~~-i~~~L~pgG~~lig~ 177 (301)
T TIGR03438 139 RLGFFPGSTIGNF--T--PEEAVAFLRR-IRQLLGPGGGLLIGV 177 (301)
T ss_pred eEEEEecccccCC--C--HHHHHHHHHH-HHHhcCCCCEEEEec
Confidence 3345555432210 1 1113468998 899999999998754
No 145
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=98.61 E-value=1.3e-07 Score=80.35 Aligned_cols=96 Identities=23% Similarity=0.248 Sum_probs=68.4
Q ss_pred CCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEE
Q 019699 100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (337)
Q Consensus 100 ~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvI 179 (337)
.++.++||+||||.|.+++.+.+.. .+++++|+++.+++. .. +.....+... .....++||+|
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~~~g~D~~~~~~~~--~~------------~~~~~~~~~~-~~~~~~~fD~i 82 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKRG--FEVTGVDISPQMIEK--RN------------VVFDNFDAQD-PPFPDGSFDLI 82 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHTT--SEEEEEESSHHHHHH--TT------------SEEEEEECHT-HHCHSSSEEEE
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHhC--CEEEEEECCHHHHhh--hh------------hhhhhhhhhh-hhccccchhhH
Confidence 4678899999999999999997653 499999999999988 11 1111111111 12235789999
Q ss_pred EEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (337)
Q Consensus 180 i~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~ 219 (337)
++...-.. -+ .-..+++. ++++|+|||.+++..
T Consensus 83 ~~~~~l~~--~~----d~~~~l~~-l~~~LkpgG~l~~~~ 115 (161)
T PF13489_consen 83 ICNDVLEH--LP----DPEEFLKE-LSRLLKPGGYLVISD 115 (161)
T ss_dssp EEESSGGG--SS----HHHHHHHH-HHHCEEEEEEEEEEE
T ss_pred hhHHHHhh--cc----cHHHHHHH-HHHhcCCCCEEEEEE
Confidence 99864221 11 23578898 899999999998875
No 146
>PRK05785 hypothetical protein; Provisional
Probab=98.61 E-value=5.6e-07 Score=82.34 Aligned_cols=92 Identities=17% Similarity=0.175 Sum_probs=67.9
Q ss_pred CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (337)
Q Consensus 101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi 180 (337)
+.+.+||+||||+|.+++.+.+.. ..+|++||+++++++.|++. ...+.+|+.+ +.-.+++||+|+
T Consensus 50 ~~~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~~Ml~~a~~~------------~~~~~~d~~~-lp~~d~sfD~v~ 115 (226)
T PRK05785 50 GRPKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAENMLKMNLVA------------DDKVVGSFEA-LPFRDKSFDVVM 115 (226)
T ss_pred CCCCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCHHHHHHHHhc------------cceEEechhh-CCCCCCCEEEEE
Confidence 347899999999999999998875 46899999999999999863 1245677754 333458899999
Q ss_pred EeCCCCCCCCCCcCCchHHHHHHHhccccCCCc
Q 019699 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEG 213 (337)
Q Consensus 181 ~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~G 213 (337)
+...-... + -....+++ ++++|+|.+
T Consensus 116 ~~~~l~~~--~----d~~~~l~e-~~RvLkp~~ 141 (226)
T PRK05785 116 SSFALHAS--D----NIEKVIAE-FTRVSRKQV 141 (226)
T ss_pred ecChhhcc--C----CHHHHHHH-HHHHhcCce
Confidence 97642211 1 12467787 789999943
No 147
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.61 E-value=4.6e-07 Score=79.72 Aligned_cols=101 Identities=18% Similarity=0.182 Sum_probs=76.7
Q ss_pred CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (337)
Q Consensus 101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi 180 (337)
-+.+.|+|+|||+|.++..++.. +..+|.+||+||+.+++++++.... ..+++++++|..++ ..++|.+|
T Consensus 44 l~g~~V~DlG~GTG~La~ga~~l-Ga~~V~~vdiD~~a~ei~r~N~~~l-----~g~v~f~~~dv~~~----~~~~dtvi 113 (198)
T COG2263 44 LEGKTVLDLGAGTGILAIGAALL-GASRVLAVDIDPEALEIARANAEEL-----LGDVEFVVADVSDF----RGKFDTVI 113 (198)
T ss_pred cCCCEEEEcCCCcCHHHHHHHhc-CCcEEEEEecCHHHHHHHHHHHHhh-----CCceEEEEcchhhc----CCccceEE
Confidence 45678999999999999888765 5689999999999999999987642 36899999997665 47899999
Q ss_pred EeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (337)
Q Consensus 181 ~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~ 218 (337)
+|++... . ..+ -.++|+.. +.+.- +.++.+.
T Consensus 114 mNPPFG~--~-~rh-aDr~Fl~~-Ale~s--~vVYsiH 144 (198)
T COG2263 114 MNPPFGS--Q-RRH-ADRPFLLK-ALEIS--DVVYSIH 144 (198)
T ss_pred ECCCCcc--c-ccc-CCHHHHHH-HHHhh--heEEEee
Confidence 9997433 1 123 56788876 43322 4555554
No 148
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.61 E-value=8.4e-08 Score=87.17 Aligned_cols=130 Identities=18% Similarity=0.215 Sum_probs=88.5
Q ss_pred CCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEE
Q 019699 100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (337)
Q Consensus 100 ~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvI 179 (337)
++.-+-++++|+|+|.+++-++.|+ ++|+++|+++.++++|+++++..- .+-..++...|...++.. +++-|+|
T Consensus 31 ~~~h~~a~DvG~G~Gqa~~~iae~~--k~VIatD~s~~mL~~a~k~~~~~y---~~t~~~ms~~~~v~L~g~-e~SVDlI 104 (261)
T KOG3010|consen 31 TEGHRLAWDVGTGNGQAARGIAEHY--KEVIATDVSEAMLKVAKKHPPVTY---CHTPSTMSSDEMVDLLGG-EESVDLI 104 (261)
T ss_pred CCCcceEEEeccCCCcchHHHHHhh--hhheeecCCHHHHHHhhcCCCccc---ccCCccccccccccccCC-Ccceeee
Confidence 4555689999999999999999996 789999999999999999986431 233344555555555532 5889999
Q ss_pred EEeCCCCCCCCCCcCCchHHHHHHHhccccCCCc-eEEEeCCCCCcCCChhHHHHHHHHHhhhcC
Q 019699 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEG-IFVTQAGPAGIFSHTEVFSCIYNTLRQVFK 243 (337)
Q Consensus 180 i~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~G-vlv~~~~~p~~~~~~~~~~~i~~~l~~vF~ 243 (337)
++--.-+|- --.+||+. +++.|+++| +++++...-.....++...-+++...+-.|
T Consensus 105 ~~Aqa~HWF-------dle~fy~~-~~rvLRk~Gg~iavW~Y~dd~v~~pE~dsv~~r~~~~~~p 161 (261)
T KOG3010|consen 105 TAAQAVHWF-------DLERFYKE-AYRVLRKDGGLIAVWNYNDDFVDWPEFDSVMLRLYDSTLP 161 (261)
T ss_pred hhhhhHHhh-------chHHHHHH-HHHHcCCCCCEEEEEEccCCCcCCHHHHHHHHHHhhccCc
Confidence 987554441 23589998 899999877 777765321112234444444444444444
No 149
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=98.61 E-value=1.8e-07 Score=84.82 Aligned_cols=110 Identities=14% Similarity=0.096 Sum_probs=74.8
Q ss_pred CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhcc--------CCCCCCCeEEEEccHHHHHhhc
Q 019699 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNK--------EAFSDPRLELVINDARAELESR 172 (337)
Q Consensus 101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~--------~~~~d~rv~v~~~D~~~~l~~~ 172 (337)
++..+||++|||.|.-+..++++ .-+|++||+++..++.+.+...... ......+++++++|..++-...
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~--G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~ 110 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQ--GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAAD 110 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhC--CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCccc
Confidence 45679999999999999999986 3689999999999997543211100 0112457999999987763322
Q ss_pred CCceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEE
Q 019699 173 KESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT 217 (337)
Q Consensus 173 ~~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~ 217 (337)
.++||.|+--..-.. -| .. ....+++. +.+.|+|||.+++
T Consensus 111 ~~~fD~i~D~~~~~~--l~-~~-~R~~~~~~-l~~lLkpgG~~ll 150 (213)
T TIGR03840 111 LGPVDAVYDRAALIA--LP-EE-MRQRYAAH-LLALLPPGARQLL 150 (213)
T ss_pred CCCcCEEEechhhcc--CC-HH-HHHHHHHH-HHHHcCCCCeEEE
Confidence 357998875433111 11 11 13457887 8999999996443
No 150
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=98.58 E-value=5.4e-07 Score=81.58 Aligned_cols=102 Identities=17% Similarity=0.182 Sum_probs=73.4
Q ss_pred CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (337)
Q Consensus 101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi 180 (337)
...++||+||||+|.++..+++. ..+|+++|+++++++.|++.+.... ...++++..+|+.+. .++||+|+
T Consensus 54 ~~~~~vLDiGcG~G~~~~~la~~--~~~v~gvD~s~~~i~~a~~~~~~~~---~~~~i~~~~~d~~~~----~~~fD~ii 124 (219)
T TIGR02021 54 LKGKRVLDAGCGTGLLSIELAKR--GAIVKAVDISEQMVQMARNRAQGRD---VAGNVEFEVNDLLSL----CGEFDIVV 124 (219)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcC---CCCceEEEECChhhC----CCCcCEEE
Confidence 45789999999999999999885 3589999999999999999876431 124799999997653 27899998
Q ss_pred EeCC-CCCCCCCCcCCchHHHHHHHhccccCCCceEEE
Q 019699 181 GDLA-DPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT 217 (337)
Q Consensus 181 ~D~~-dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~ 217 (337)
+-.. ... +... -...++. +.+.+++++++.+
T Consensus 125 ~~~~l~~~---~~~~--~~~~l~~-i~~~~~~~~~i~~ 156 (219)
T TIGR02021 125 CMDVLIHY---PASD--MAKALGH-LASLTKERVIFTF 156 (219)
T ss_pred EhhHHHhC---CHHH--HHHHHHH-HHHHhCCCEEEEE
Confidence 7432 211 1011 1346676 6777777666554
No 151
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=98.57 E-value=1.8e-07 Score=83.26 Aligned_cols=106 Identities=19% Similarity=0.244 Sum_probs=79.7
Q ss_pred CCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeE-EEEccHHHHHhhcCCceeEEE
Q 019699 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLE-LVINDARAELESRKESYDVII 180 (337)
Q Consensus 102 ~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~-v~~~D~~~~l~~~~~~yDvIi 180 (337)
....||++|||+|.--...- ..+..+||++|-++.|-+.+.+-+... ..+++. ++++||++..+-.+.+||+|+
T Consensus 76 ~K~~vLEvgcGtG~Nfkfy~-~~p~~svt~lDpn~~mee~~~ks~~E~----k~~~~~~fvva~ge~l~~l~d~s~DtVV 150 (252)
T KOG4300|consen 76 GKGDVLEVGCGTGANFKFYP-WKPINSVTCLDPNEKMEEIADKSAAEK----KPLQVERFVVADGENLPQLADGSYDTVV 150 (252)
T ss_pred CccceEEecccCCCCccccc-CCCCceEEEeCCcHHHHHHHHHHHhhc----cCcceEEEEeechhcCcccccCCeeeEE
Confidence 34578999999998776532 236889999999999999999887654 246777 999999887655678999998
Q ss_pred EeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (337)
Q Consensus 181 ~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~ 219 (337)
.-.-- +..---.+-+++ +++.|+|||++++--
T Consensus 151 ~TlvL------CSve~~~k~L~e-~~rlLRpgG~iifiE 182 (252)
T KOG4300|consen 151 CTLVL------CSVEDPVKQLNE-VRRLLRPGGRIIFIE 182 (252)
T ss_pred EEEEE------eccCCHHHHHHH-HHHhcCCCcEEEEEe
Confidence 87631 111112466778 799999999887653
No 152
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.56 E-value=3.3e-06 Score=82.56 Aligned_cols=100 Identities=14% Similarity=0.189 Sum_probs=76.0
Q ss_pred CCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhc----------
Q 019699 103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR---------- 172 (337)
Q Consensus 103 p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~---------- 172 (337)
+.+||+++||+|.++..+++. ..+|++||+++.+++.|+++...++ -.+++++.+|+.++++..
T Consensus 207 ~~~vLDl~~G~G~~sl~la~~--~~~v~~vE~~~~ai~~a~~N~~~~~----~~~v~~~~~d~~~~l~~~~~~~~~~~~~ 280 (362)
T PRK05031 207 KGDLLELYCGNGNFTLALARN--FRRVLATEISKPSVAAAQYNIAANG----IDNVQIIRMSAEEFTQAMNGVREFNRLK 280 (362)
T ss_pred CCeEEEEeccccHHHHHHHhh--CCEEEEEECCHHHHHHHHHHHHHhC----CCcEEEEECCHHHHHHHHhhcccccccc
Confidence 357999999999999988875 3689999999999999999886653 247999999999988642
Q ss_pred -----CCceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCC
Q 019699 173 -----KESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG 220 (337)
Q Consensus 173 -----~~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~ 220 (337)
..+||+|++|++. .|. ..+..+. + +++++++.+.+.
T Consensus 281 ~~~~~~~~~D~v~lDPPR---~G~-----~~~~l~~-l---~~~~~ivyvSC~ 321 (362)
T PRK05031 281 GIDLKSYNFSTIFVDPPR---AGL-----DDETLKL-V---QAYERILYISCN 321 (362)
T ss_pred cccccCCCCCEEEECCCC---CCC-----cHHHHHH-H---HccCCEEEEEeC
Confidence 1259999999873 132 2344454 3 347888877653
No 153
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.55 E-value=3.8e-06 Score=81.93 Aligned_cols=100 Identities=14% Similarity=0.163 Sum_probs=76.0
Q ss_pred CCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhc---------C
Q 019699 103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR---------K 173 (337)
Q Consensus 103 p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~---------~ 173 (337)
+.+||++|||+|.++..+++.. .+|++||+++++++.|+++...+. -.+++++.+|+.+++... .
T Consensus 198 ~~~vlDl~~G~G~~sl~la~~~--~~v~~vE~~~~av~~a~~n~~~~~----~~~v~~~~~d~~~~~~~~~~~~~~~~~~ 271 (353)
T TIGR02143 198 KGDLLELYCGNGNFSLALAQNF--RRVLATEIAKPSVNAAQYNIAANN----IDNVQIIRMSAEEFTQAMNGVREFRRLK 271 (353)
T ss_pred CCcEEEEeccccHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHHHcC----CCcEEEEEcCHHHHHHHHhhcccccccc
Confidence 4579999999999999888764 589999999999999999987653 246999999999988641 1
Q ss_pred ------CceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCC
Q 019699 174 ------ESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG 220 (337)
Q Consensus 174 ------~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~ 220 (337)
.+||+|++|++. .|. ..+..+. + +++++++.+.+.
T Consensus 272 ~~~~~~~~~d~v~lDPPR---~G~-----~~~~l~~-l---~~~~~ivYvsC~ 312 (353)
T TIGR02143 272 GIDLKSYNCSTIFVDPPR---AGL-----DPDTCKL-V---QAYERILYISCN 312 (353)
T ss_pred ccccccCCCCEEEECCCC---CCC-----cHHHHHH-H---HcCCcEEEEEcC
Confidence 248999999873 132 2344444 3 347888887753
No 154
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=98.55 E-value=5.9e-07 Score=78.55 Aligned_cols=111 Identities=21% Similarity=0.370 Sum_probs=73.7
Q ss_pred CCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEEE
Q 019699 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG 181 (337)
Q Consensus 102 ~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~ 181 (337)
+..+||++|+|.|.++..+++..=...+++||-+++.+++|+.--...+ + +..+++...|...- ....++||+|+-
T Consensus 67 ~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~--~-~n~I~f~q~DI~~~-~~~~~qfdlvlD 142 (227)
T KOG1271|consen 67 QADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDG--F-SNEIRFQQLDITDP-DFLSGQFDLVLD 142 (227)
T ss_pred cccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcC--C-CcceeEEEeeccCC-cccccceeEEee
Confidence 3449999999999999999986323459999999999999876543322 2 23488888887542 223467777753
Q ss_pred eCC-CCCC---CCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699 182 DLA-DPIE---GGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (337)
Q Consensus 182 D~~-dp~~---~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~ 219 (337)
-.+ |... .++-..+ .-++.. +.+.|+|||++++-+
T Consensus 143 KGT~DAisLs~d~~~~r~--~~Y~d~-v~~ll~~~gifvItS 181 (227)
T KOG1271|consen 143 KGTLDAISLSPDGPVGRL--VVYLDS-VEKLLSPGGIFVITS 181 (227)
T ss_pred cCceeeeecCCCCcccce--eeehhh-HhhccCCCcEEEEEe
Confidence 222 1110 1222222 234454 789999999999875
No 155
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=98.53 E-value=1.2e-06 Score=79.40 Aligned_cols=74 Identities=20% Similarity=0.197 Sum_probs=59.1
Q ss_pred CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (337)
Q Consensus 101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi 180 (337)
.++.+||+||||+|.++..++++. .+++++|+++.+++.|++.+.... ...+++++.+|. .. ..+.||+|+
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~--~~v~~~D~s~~~i~~a~~~~~~~~---~~~~i~~~~~d~-~~---~~~~fD~v~ 132 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRG--AKVVASDISPQMVEEARERAPEAG---LAGNITFEVGDL-ES---LLGRFDTVV 132 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHhcC---CccCcEEEEcCc-hh---ccCCcCEEE
Confidence 456899999999999999998864 469999999999999999876432 125889999992 22 346799998
Q ss_pred EeC
Q 019699 181 GDL 183 (337)
Q Consensus 181 ~D~ 183 (337)
+..
T Consensus 133 ~~~ 135 (230)
T PRK07580 133 CLD 135 (230)
T ss_pred Ecc
Confidence 754
No 156
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=98.52 E-value=4.3e-07 Score=80.94 Aligned_cols=105 Identities=19% Similarity=0.161 Sum_probs=73.2
Q ss_pred CCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEE
Q 019699 100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (337)
Q Consensus 100 ~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvI 179 (337)
+.++.++|+||||.|.-+..+++. .-.|++||+++..++.+++..... +=.++....|..++- .+++||+|
T Consensus 28 ~~~~g~~LDlgcG~GRNalyLA~~--G~~VtAvD~s~~al~~l~~~a~~~-----~l~i~~~~~Dl~~~~--~~~~yD~I 98 (192)
T PF03848_consen 28 LLKPGKALDLGCGEGRNALYLASQ--GFDVTAVDISPVALEKLQRLAEEE-----GLDIRTRVADLNDFD--FPEEYDFI 98 (192)
T ss_dssp TS-SSEEEEES-TTSHHHHHHHHT--T-EEEEEESSHHHHHHHHHHHHHT-----T-TEEEEE-BGCCBS---TTTEEEE
T ss_pred hcCCCcEEEcCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHhhc-----CceeEEEEecchhcc--ccCCcCEE
Confidence 456899999999999999999997 368999999999999887754332 223888888865542 24689999
Q ss_pred EEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (337)
Q Consensus 180 i~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~ 218 (337)
++...-.. -+ ..+ -...++. +++.++|||++++.
T Consensus 99 ~st~v~~f--L~-~~~-~~~i~~~-m~~~~~pGG~~li~ 132 (192)
T PF03848_consen 99 VSTVVFMF--LQ-REL-RPQIIEN-MKAATKPGGYNLIV 132 (192)
T ss_dssp EEESSGGG--S--GGG-HHHHHHH-HHHTEEEEEEEEEE
T ss_pred EEEEEecc--CC-HHH-HHHHHHH-HHhhcCCcEEEEEE
Confidence 98643211 11 112 2457787 79999999987764
No 157
>PRK06202 hypothetical protein; Provisional
Probab=98.50 E-value=6.4e-07 Score=81.89 Aligned_cols=103 Identities=16% Similarity=0.128 Sum_probs=69.9
Q ss_pred CCCCeEEEEecchhHHHHHHHhc----CCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCce
Q 019699 101 PNPKTIFIMGGGEGSTAREILRH----KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESY 176 (337)
Q Consensus 101 ~~p~~VLiIG~G~G~~~~~ll~~----~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~y 176 (337)
.++.+||+||||+|.++..++++ .+..+|++||+++++++.|++... .+++++...|+... ...+++|
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~-------~~~~~~~~~~~~~l-~~~~~~f 130 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPR-------RPGVTFRQAVSDEL-VAEGERF 130 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccc-------cCCCeEEEEecccc-cccCCCc
Confidence 56789999999999998888753 234589999999999999988643 23456666654332 2245789
Q ss_pred eEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699 177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (337)
Q Consensus 177 DvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~ 218 (337)
|+|++...-.. -+.. ...++++. +.+.++ |.++++
T Consensus 131 D~V~~~~~lhh--~~d~--~~~~~l~~-~~r~~~--~~~~i~ 165 (232)
T PRK06202 131 DVVTSNHFLHH--LDDA--EVVRLLAD-SAALAR--RLVLHN 165 (232)
T ss_pred cEEEECCeeec--CChH--HHHHHHHH-HHHhcC--eeEEEe
Confidence 99999864221 1100 12468888 787777 445555
No 158
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=98.50 E-value=4.8e-07 Score=82.40 Aligned_cols=107 Identities=12% Similarity=0.058 Sum_probs=74.4
Q ss_pred CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhcc--------CCCCCCCeEEEEccHHHHHhhc
Q 019699 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNK--------EAFSDPRLELVINDARAELESR 172 (337)
Q Consensus 101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~--------~~~~d~rv~v~~~D~~~~l~~~ 172 (337)
++..+||++|||.|.-+..++++ ..+|++||+++..++.+.+.-.... ......+++++.+|..++-...
T Consensus 36 ~~~~rvL~~gCG~G~da~~LA~~--G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~ 113 (218)
T PRK13255 36 PAGSRVLVPLCGKSLDMLWLAEQ--GHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAAD 113 (218)
T ss_pred CCCCeEEEeCCCChHhHHHHHhC--CCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCccc
Confidence 45579999999999999999986 3689999999999997643211110 0123578999999998774333
Q ss_pred CCceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCce
Q 019699 173 KESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGI 214 (337)
Q Consensus 173 ~~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gv 214 (337)
...||.|+--..-.. -| .. ....+++. +.+.|+|||.
T Consensus 114 ~~~fd~v~D~~~~~~--l~-~~-~R~~~~~~-l~~lL~pgG~ 150 (218)
T PRK13255 114 LADVDAVYDRAALIA--LP-EE-MRERYVQQ-LAALLPAGCR 150 (218)
T ss_pred CCCeeEEEehHhHhh--CC-HH-HHHHHHHH-HHHHcCCCCe
Confidence 357999884332110 11 11 13568888 8999999985
No 159
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=98.50 E-value=3.1e-07 Score=86.03 Aligned_cols=111 Identities=15% Similarity=0.180 Sum_probs=72.4
Q ss_pred CCCeEEEEecchhH----HHHHHHhcCC-----CcEEEEEECChHHHHHHHhhhh-h-----------------ccCCC-
Q 019699 102 NPKTIFIMGGGEGS----TAREILRHKT-----VEKVVMCDIDEEVVEFCKSYLV-V-----------------NKEAF- 153 (337)
Q Consensus 102 ~p~~VLiIG~G~G~----~~~~ll~~~~-----~~~v~~VEid~~vi~~a~~~f~-~-----------------~~~~~- 153 (337)
.+.+|+++|||+|. ++..++++.+ ..+|+++|||+.+++.|++-.- . ..+.+
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 45799999999996 4445554422 3689999999999999998421 0 00000
Q ss_pred ----CCCCeEEEEccHHHHHhhcCCceeEEEEeCC-CCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699 154 ----SDPRLELVINDARAELESRKESYDVIIGDLA-DPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (337)
Q Consensus 154 ----~d~rv~v~~~D~~~~l~~~~~~yDvIi~D~~-dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~ 219 (337)
-..++++...|..+.- ...++||+|++--. ... . .-.....++. +.++|+|||.+++-.
T Consensus 179 v~~~ir~~V~F~~~dl~~~~-~~~~~fD~I~crnvl~yf--~---~~~~~~~l~~-l~~~L~pGG~L~lg~ 242 (264)
T smart00138 179 VKPELKERVRFAKHNLLAES-PPLGDFDLIFCRNVLIYF--D---EPTQRKLLNR-FAEALKPGGYLFLGH 242 (264)
T ss_pred EChHHhCcCEEeeccCCCCC-CccCCCCEEEechhHHhC--C---HHHHHHHHHH-HHHHhCCCeEEEEEC
Confidence 0136788888876531 12478999998422 111 0 0112468888 799999999999853
No 160
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.45 E-value=3.7e-07 Score=81.96 Aligned_cols=100 Identities=25% Similarity=0.405 Sum_probs=74.4
Q ss_pred CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (337)
Q Consensus 101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi 180 (337)
.+...||++.+|-|.++..++++...+.|.++|++|..++..+++...++ + +.++.++.+|+++++. ...+|.|+
T Consensus 100 ~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNk--v-~~~i~~~~~D~~~~~~--~~~~drvi 174 (200)
T PF02475_consen 100 KPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNK--V-ENRIEVINGDAREFLP--EGKFDRVI 174 (200)
T ss_dssp -TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT----TTTEEEEES-GGG-----TT-EEEEE
T ss_pred CcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcC--C-CCeEEEEcCCHHHhcC--ccccCEEE
Confidence 56789999999999999999997777899999999999999999988774 2 4689999999999987 57899999
Q ss_pred EeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEE
Q 019699 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFV 216 (337)
Q Consensus 181 ~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv 216 (337)
++.+.. +.+|+.. +.++++++|++.
T Consensus 175 m~lp~~----------~~~fl~~-~~~~~~~~g~ih 199 (200)
T PF02475_consen 175 MNLPES----------SLEFLDA-ALSLLKEGGIIH 199 (200)
T ss_dssp E--TSS----------GGGGHHH-HHHHEEEEEEEE
T ss_pred ECChHH----------HHHHHHH-HHHHhcCCcEEE
Confidence 998631 2367776 678899999874
No 161
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.44 E-value=5.1e-07 Score=82.96 Aligned_cols=97 Identities=23% Similarity=0.236 Sum_probs=74.3
Q ss_pred CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (337)
Q Consensus 101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi 180 (337)
+..++||+||||.|..+.++++.+|..++++.|+ |.|++.+++ .+|++++.+|.+ ...+. +|+|+
T Consensus 99 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~----------~~rv~~~~gd~f---~~~P~-~D~~~ 163 (241)
T PF00891_consen 99 SGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE----------ADRVEFVPGDFF---DPLPV-ADVYL 163 (241)
T ss_dssp TTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH----------TTTEEEEES-TT---TCCSS-ESEEE
T ss_pred cCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc----------ccccccccccHH---hhhcc-cccee
Confidence 4568999999999999999999888999999999 999999988 379999999975 44455 99999
Q ss_pred EeCC-CCCCCCCCcCCchHHHHHHHhccccCCC--ceEEEe
Q 019699 181 GDLA-DPIEGGPCYKLYTKSFYEFVVKPRLNPE--GIFVTQ 218 (337)
Q Consensus 181 ~D~~-dp~~~~p~~~L~t~ef~~~~~~~~L~p~--Gvlv~~ 218 (337)
+--. ..+ .+ =-....+++ +++.|+|| |.+++.
T Consensus 164 l~~vLh~~--~d---~~~~~iL~~-~~~al~pg~~g~llI~ 198 (241)
T PF00891_consen 164 LRHVLHDW--SD---EDCVKILRN-AAAALKPGKDGRLLII 198 (241)
T ss_dssp EESSGGGS---H---HHHHHHHHH-HHHHSEECTTEEEEEE
T ss_pred eehhhhhc--ch---HHHHHHHHH-HHHHhCCCCCCeEEEE
Confidence 8654 222 11 112457888 79999988 977765
No 162
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=98.44 E-value=2.2e-06 Score=79.31 Aligned_cols=117 Identities=18% Similarity=0.248 Sum_probs=83.3
Q ss_pred CCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEE----ccHHHHHhhcCCc
Q 019699 100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI----NDARAELESRKES 175 (337)
Q Consensus 100 ~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~----~D~~~~l~~~~~~ 175 (337)
|-.+..+|++|||+|+++..+++.-+..+|++||.++..+.+|.++..... -..++.+++ +|...-.+...++
T Consensus 146 ~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~---l~g~i~v~~~~me~d~~~~~~l~~~~ 222 (328)
T KOG2904|consen 146 HSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLK---LSGRIEVIHNIMESDASDEHPLLEGK 222 (328)
T ss_pred hcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHh---hcCceEEEecccccccccccccccCc
Confidence 456678999999999999999987778899999999999999999876432 135777774 4443333333488
Q ss_pred eeEEEEeCCC-CCCC-----------CCCcCCc--------hHHHHHHHhccccCCCceEEEeCC
Q 019699 176 YDVIIGDLAD-PIEG-----------GPCYKLY--------TKSFYEFVVKPRLNPEGIFVTQAG 220 (337)
Q Consensus 176 yDvIi~D~~d-p~~~-----------~p~~~L~--------t~ef~~~~~~~~L~p~Gvlv~~~~ 220 (337)
+|+|+++++. +..+ .|...|. -..++.. +.|+|.|||.+.++..
T Consensus 223 ~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~-a~R~Lq~gg~~~le~~ 286 (328)
T KOG2904|consen 223 IDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLL-ATRMLQPGGFEQLELV 286 (328)
T ss_pred eeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHh-hHhhcccCCeEEEEec
Confidence 9999999972 1111 1111111 1235665 6899999999998864
No 163
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=98.41 E-value=8.3e-06 Score=82.22 Aligned_cols=134 Identities=17% Similarity=0.173 Sum_probs=94.7
Q ss_pred CCCCeEEEEecchhHHHHHHHhcC-CCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEE
Q 019699 101 PNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (337)
Q Consensus 101 ~~p~~VLiIG~G~G~~~~~ll~~~-~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvI 179 (337)
.++.+|||+|+|.|+=+..++... ....|+++|+++.=++..++++...+ -.++.+...|+..+-......||.|
T Consensus 112 ~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G----~~nv~v~~~D~~~~~~~~~~~fD~I 187 (470)
T PRK11933 112 NAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCG----VSNVALTHFDGRVFGAALPETFDAI 187 (470)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcC----CCeEEEEeCchhhhhhhchhhcCeE
Confidence 456899999999999988888753 34589999999999999999876432 3568999999987755556789999
Q ss_pred EEeCCCCCCCCCCc----C-------------CchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhhc
Q 019699 180 IGDLADPIEGGPCY----K-------------LYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVF 242 (337)
Q Consensus 180 i~D~~dp~~~~p~~----~-------------L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~vF 242 (337)
++|++-... |... . -...+.+.. +.++|+|||++|-.+.+ ..++.-+.+++.+-+-+
T Consensus 188 LvDaPCSG~-G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~-A~~~LkpGG~LVYSTCT----~~~eENE~vV~~~L~~~ 261 (470)
T PRK11933 188 LLDAPCSGE-GTVRKDPDALKNWSPESNLEIAATQRELIES-AFHALKPGGTLVYSTCT----LNREENQAVCLWLKETY 261 (470)
T ss_pred EEcCCCCCC-cccccCHHHhhhCCHHHHHHHHHHHHHHHHH-HHHHcCCCcEEEEECCC----CCHHHHHHHHHHHHHHC
Confidence 999983211 1110 0 112567777 67899999999755432 24555556666555455
Q ss_pred Cc
Q 019699 243 KY 244 (337)
Q Consensus 243 ~~ 244 (337)
+.
T Consensus 262 ~~ 263 (470)
T PRK11933 262 PD 263 (470)
T ss_pred CC
Confidence 54
No 164
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=98.41 E-value=9.9e-07 Score=78.14 Aligned_cols=73 Identities=18% Similarity=0.243 Sum_probs=61.7
Q ss_pred CCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhc-CCceeE
Q 019699 100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR-KESYDV 178 (337)
Q Consensus 100 ~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~-~~~yDv 178 (337)
.++..|||+||||+|.++..+.+.. ..+..+||||++-+..|.+ ..+.++.+|.-+-|... +++||.
T Consensus 11 I~pgsrVLDLGCGdG~LL~~L~~~k-~v~g~GvEid~~~v~~cv~-----------rGv~Viq~Dld~gL~~f~d~sFD~ 78 (193)
T PF07021_consen 11 IEPGSRVLDLGCGDGELLAYLKDEK-QVDGYGVEIDPDNVAACVA-----------RGVSVIQGDLDEGLADFPDQSFDY 78 (193)
T ss_pred cCCCCEEEecCCCchHHHHHHHHhc-CCeEEEEecCHHHHHHHHH-----------cCCCEEECCHHHhHhhCCCCCccE
Confidence 3567899999999999999888865 5789999999998888765 35789999999888764 588999
Q ss_pred EEEeCC
Q 019699 179 IIGDLA 184 (337)
Q Consensus 179 Ii~D~~ 184 (337)
||+.-+
T Consensus 79 VIlsqt 84 (193)
T PF07021_consen 79 VILSQT 84 (193)
T ss_pred EehHhH
Confidence 998865
No 165
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.41 E-value=2.8e-06 Score=80.82 Aligned_cols=102 Identities=20% Similarity=0.295 Sum_probs=74.6
Q ss_pred CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (337)
Q Consensus 101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi 180 (337)
.+..+||+||+|.|.++..+++. ..+|++||+|+.+++.+++.+.... ..++++++.+|+.++- -..||+|+
T Consensus 35 ~~~~~VLEIG~G~G~LT~~Ll~~--~~~V~avEiD~~li~~l~~~~~~~~---~~~~v~ii~~Dal~~~---~~~~d~Vv 106 (294)
T PTZ00338 35 KPTDTVLEIGPGTGNLTEKLLQL--AKKVIAIEIDPRMVAELKKRFQNSP---LASKLEVIEGDALKTE---FPYFDVCV 106 (294)
T ss_pred CCcCEEEEecCchHHHHHHHHHh--CCcEEEEECCHHHHHHHHHHHHhcC---CCCcEEEEECCHhhhc---ccccCEEE
Confidence 45578999999999999999986 3689999999999999999875431 1468999999997752 24689999
Q ss_pred EeCCCCCCCCCCcCCchHHHHHHHhcc-ccCCCceEEEeC
Q 019699 181 GDLADPIEGGPCYKLYTKSFYEFVVKP-RLNPEGIFVTQA 219 (337)
Q Consensus 181 ~D~~dp~~~~p~~~L~t~ef~~~~~~~-~L~p~Gvlv~~~ 219 (337)
.+++... .+...++. +.. ..-...++++|-
T Consensus 107 aNlPY~I--------stpil~~l-l~~~~~~~~~vlm~Qk 137 (294)
T PTZ00338 107 ANVPYQI--------SSPLVFKL-LAHRPLFRCAVLMFQK 137 (294)
T ss_pred ecCCccc--------CcHHHHHH-HhcCCCCceeeeeehH
Confidence 9886432 23445554 432 222356777763
No 166
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.40 E-value=7.1e-06 Score=83.68 Aligned_cols=129 Identities=15% Similarity=0.108 Sum_probs=96.8
Q ss_pred CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhc-CCceeEE
Q 019699 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR-KESYDVI 179 (337)
Q Consensus 101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~-~~~yDvI 179 (337)
.+..-+|+||||.|..+.++++..|...+.+||+....+..+.+..... +-.++.++.+|+..+.... +++.|.|
T Consensus 346 ~~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~----~l~N~~~~~~~~~~~~~~~~~~sv~~i 421 (506)
T PRK01544 346 EKRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQ----NITNFLLFPNNLDLILNDLPNNSLDGI 421 (506)
T ss_pred CCCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHc----CCCeEEEEcCCHHHHHHhcCcccccEE
Confidence 3456799999999999999998878899999999999877665543321 1257888988876554443 4779999
Q ss_pred EEeCCCCCCCC--CCcCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhh
Q 019699 180 IGDLADPIEGG--PCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQ 240 (337)
Q Consensus 180 i~D~~dp~~~~--p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~ 240 (337)
++..+|||-.. .-..+.+.+|++. +++.|+|||.+-+.+. +.+++..+...+.+
T Consensus 422 ~i~FPDPWpKkrh~krRl~~~~fl~~-~~~~Lk~gG~i~~~TD------~~~y~~~~~~~~~~ 477 (506)
T PRK01544 422 YILFPDPWIKNKQKKKRIFNKERLKI-LQDKLKDNGNLVFASD------IENYFYEAIELIQQ 477 (506)
T ss_pred EEECCCCCCCCCCccccccCHHHHHH-HHHhcCCCCEEEEEcC------CHHHHHHHHHHHHh
Confidence 99999998311 1236899999998 8999999999987752 34555555555543
No 167
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=98.37 E-value=8.8e-06 Score=78.10 Aligned_cols=104 Identities=16% Similarity=0.096 Sum_probs=70.5
Q ss_pred CCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccC-CCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKE-AFSDPRLELVINDARAELESRKESYDVII 180 (337)
Q Consensus 102 ~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~-~~~d~rv~v~~~D~~~~l~~~~~~yDvIi 180 (337)
++.+||+||||+|.++..+++. ..+|+++|+++.+++.|++....... .....++++...|.... .++||+|+
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~--g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l----~~~fD~Vv 217 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE--GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL----SGKYDTVT 217 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc----CCCcCEEE
Confidence 4679999999999999999985 36899999999999999998653210 01134678888886432 47899998
Q ss_pred EeCC-CCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699 181 GDLA-DPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (337)
Q Consensus 181 ~D~~-dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~ 218 (337)
+-.. .+. |... -.++++. +. .+.++|+++..
T Consensus 218 ~~~vL~H~---p~~~--~~~ll~~-l~-~l~~g~liIs~ 249 (315)
T PLN02585 218 CLDVLIHY---PQDK--ADGMIAH-LA-SLAEKRLIISF 249 (315)
T ss_pred EcCEEEec---CHHH--HHHHHHH-HH-hhcCCEEEEEe
Confidence 6432 111 1111 1245665 44 46677776643
No 168
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.35 E-value=2.1e-06 Score=86.10 Aligned_cols=106 Identities=19% Similarity=0.310 Sum_probs=72.5
Q ss_pred CCeEEEEecchhHHHHHHHhc----CCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeE
Q 019699 103 PKTIFIMGGGEGSTAREILRH----KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV 178 (337)
Q Consensus 103 p~~VLiIG~G~G~~~~~ll~~----~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDv 178 (337)
.+.||+||+|.|.+...+++. ....+|.+||-++..+...++....+ .+ +.+|+++.+|.+++- .+++.|+
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n--~w-~~~V~vi~~d~r~v~--lpekvDI 261 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNAN--GW-GDKVTVIHGDMREVE--LPEKVDI 261 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHT--TT-TTTEEEEES-TTTSC--HSS-EEE
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhc--CC-CCeEEEEeCcccCCC--CCCceeE
Confidence 467999999999998776653 23579999999998887766543322 23 468999999988873 3579999
Q ss_pred EEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (337)
Q Consensus 179 Ii~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~ 218 (337)
||+..-... + ..+ ...|.+.. ..+.|+|+|+++-+
T Consensus 262 IVSElLGsf--g-~nE-l~pE~Lda-~~rfLkp~Gi~IP~ 296 (448)
T PF05185_consen 262 IVSELLGSF--G-DNE-LSPECLDA-ADRFLKPDGIMIPS 296 (448)
T ss_dssp EEE---BTT--B-TTT-SHHHHHHH-GGGGEEEEEEEESS
T ss_pred EEEeccCCc--c-ccc-cCHHHHHH-HHhhcCCCCEEeCc
Confidence 999986432 2 133 34577777 78999999998744
No 169
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.34 E-value=4.4e-06 Score=80.21 Aligned_cols=82 Identities=17% Similarity=0.242 Sum_probs=61.0
Q ss_pred CCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEE-ccHHHHHh---hcCCcee
Q 019699 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI-NDARAELE---SRKESYD 177 (337)
Q Consensus 102 ~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~-~D~~~~l~---~~~~~yD 177 (337)
...++||||+|+|++...++......+++++|||+..++.|+++...+. .+ ..+++++. .|....+. ...++||
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np-~l-~~~I~~~~~~~~~~i~~~i~~~~~~fD 191 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANP-GL-NGAIRLRLQKDSKAIFKGIIHKNERFD 191 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcc-CC-cCcEEEEEccchhhhhhcccccCCceE
Confidence 4589999999999887766654446789999999999999999987651 12 35788864 34433333 2356899
Q ss_pred EEEEeCCC
Q 019699 178 VIIGDLAD 185 (337)
Q Consensus 178 vIi~D~~d 185 (337)
+|+++++.
T Consensus 192 livcNPPf 199 (321)
T PRK11727 192 ATLCNPPF 199 (321)
T ss_pred EEEeCCCC
Confidence 99999973
No 170
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=98.30 E-value=7.5e-06 Score=77.33 Aligned_cols=114 Identities=18% Similarity=0.219 Sum_probs=79.9
Q ss_pred hhHHHHHHhHHHhcCCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHH---HHHhhhhhccCCCCCCCeEEEE
Q 019699 86 FIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVE---FCKSYLVVNKEAFSDPRLELVI 162 (337)
Q Consensus 86 ~~Y~e~l~~~~l~~~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~---~a~~~f~~~~~~~~d~rv~v~~ 162 (337)
+-+.+..-|++ .-..++||+||||.|..+-.+++. +.+.|+++|-++...- +++++++. ++++ ...
T Consensus 102 ~KW~rl~p~l~---~L~gk~VLDIGC~nGY~~frM~~~-GA~~ViGiDP~~lf~~QF~~i~~~lg~------~~~~-~~l 170 (315)
T PF08003_consen 102 WKWDRLLPHLP---DLKGKRVLDIGCNNGYYSFRMLGR-GAKSVIGIDPSPLFYLQFEAIKHFLGQ------DPPV-FEL 170 (315)
T ss_pred chHHHHHhhhC---CcCCCEEEEecCCCcHHHHHHhhc-CCCEEEEECCChHHHHHHHHHHHHhCC------CccE-EEc
Confidence 55677666653 236789999999999999999986 4688999998887643 33333321 2232 333
Q ss_pred ccHHHHHhhcCCceeEEEEeCC-CCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699 163 NDARAELESRKESYDVIIGDLA-DPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (337)
Q Consensus 163 ~D~~~~l~~~~~~yDvIi~D~~-dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~ 219 (337)
..+.+.|.. .+.||+||+-.- -+. ..| .+.++. +++.|++||.+++.+
T Consensus 171 plgvE~Lp~-~~~FDtVF~MGVLYHr-r~P------l~~L~~-Lk~~L~~gGeLvLET 219 (315)
T PF08003_consen 171 PLGVEDLPN-LGAFDTVFSMGVLYHR-RSP------LDHLKQ-LKDSLRPGGELVLET 219 (315)
T ss_pred Ccchhhccc-cCCcCEEEEeeehhcc-CCH------HHHHHH-HHHhhCCCCEEEEEE
Confidence 567788876 688999998753 111 123 356677 799999999999775
No 171
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.29 E-value=4.2e-06 Score=77.77 Aligned_cols=74 Identities=18% Similarity=0.219 Sum_probs=62.3
Q ss_pred CCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCC--ceeEEE
Q 019699 103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKE--SYDVII 180 (337)
Q Consensus 103 p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~--~yDvIi 180 (337)
...||+||.|.|+++..+++.. .+|++||||+.+++..++.+.. .++++++.+|+.++= ..+ .++.|+
T Consensus 31 ~d~VlEIGpG~GaLT~~Ll~~~--~~v~aiEiD~~l~~~L~~~~~~------~~n~~vi~~DaLk~d--~~~l~~~~~vV 100 (259)
T COG0030 31 GDNVLEIGPGLGALTEPLLERA--ARVTAIEIDRRLAEVLKERFAP------YDNLTVINGDALKFD--FPSLAQPYKVV 100 (259)
T ss_pred CCeEEEECCCCCHHHHHHHhhc--CeEEEEEeCHHHHHHHHHhccc------ccceEEEeCchhcCc--chhhcCCCEEE
Confidence 5799999999999999999973 6799999999999999998752 368999999998752 122 689999
Q ss_pred EeCCCC
Q 019699 181 GDLADP 186 (337)
Q Consensus 181 ~D~~dp 186 (337)
.+++..
T Consensus 101 aNlPY~ 106 (259)
T COG0030 101 ANLPYN 106 (259)
T ss_pred EcCCCc
Confidence 998743
No 172
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.26 E-value=2.8e-06 Score=73.77 Aligned_cols=75 Identities=23% Similarity=0.264 Sum_probs=56.2
Q ss_pred eEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcC-C-ceeEEEEe
Q 019699 105 TIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRK-E-SYDVIIGD 182 (337)
Q Consensus 105 ~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~-~-~yDvIi~D 182 (337)
.|+|+.||.|+-+..+++.. .+|++||+||.-++.|+.+....+ -..|++++.+|..+.+++.. . .||+|+++
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~--~~Viaidid~~~~~~a~hNa~vYG---v~~~I~~i~gD~~~~~~~~~~~~~~D~vFlS 76 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTF--DRVIAIDIDPERLECAKHNAEVYG---VADNIDFICGDFFELLKRLKSNKIFDVVFLS 76 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT---EEEEEES-HHHHHHHHHHHHHTT----GGGEEEEES-HHHHGGGB------SEEEE-
T ss_pred EEEEeccCcCHHHHHHHHhC--CeEEEEECCHHHHHHHHHHHHHcC---CCCcEEEEeCCHHHHHhhccccccccEEEEC
Confidence 58999999999999999974 689999999999999999976542 14789999999999987643 2 28999999
Q ss_pred CC
Q 019699 183 LA 184 (337)
Q Consensus 183 ~~ 184 (337)
+|
T Consensus 77 PP 78 (163)
T PF09445_consen 77 PP 78 (163)
T ss_dssp --
T ss_pred CC
Confidence 84
No 173
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.24 E-value=9.5e-06 Score=70.12 Aligned_cols=105 Identities=19% Similarity=0.244 Sum_probs=80.6
Q ss_pred CCCCeEEEEecchhHHHHHHHhcC-CCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHH---HHhh-cCCc
Q 019699 101 PNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA---ELES-RKES 175 (337)
Q Consensus 101 ~~p~~VLiIG~G~G~~~~~ll~~~-~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~---~l~~-~~~~ 175 (337)
.....||++|-|+|.+++.+++|. ..+.++++|.+++.+....+.+ |.++++.+|+.. ++.+ .+..
T Consensus 47 esglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~---------p~~~ii~gda~~l~~~l~e~~gq~ 117 (194)
T COG3963 47 ESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY---------PGVNIINGDAFDLRTTLGEHKGQF 117 (194)
T ss_pred ccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC---------CCccccccchhhHHHHHhhcCCCe
Confidence 456799999999999999999973 3568999999999999888865 345699999865 3433 3567
Q ss_pred eeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699 176 YDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (337)
Q Consensus 176 yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~ 219 (337)
||.||+-.+--. -| .-.+.+.++. +..+|..||.++.-.
T Consensus 118 ~D~viS~lPll~--~P--~~~~iaile~-~~~rl~~gg~lvqft 156 (194)
T COG3963 118 FDSVISGLPLLN--FP--MHRRIAILES-LLYRLPAGGPLVQFT 156 (194)
T ss_pred eeeEEecccccc--Cc--HHHHHHHHHH-HHHhcCCCCeEEEEE
Confidence 999999986322 22 2235678888 788999999887644
No 174
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.24 E-value=2.8e-07 Score=83.20 Aligned_cols=100 Identities=21% Similarity=0.308 Sum_probs=73.8
Q ss_pred CCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHh-hcCCceeEEEE
Q 019699 103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELE-SRKESYDVIIG 181 (337)
Q Consensus 103 p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~-~~~~~yDvIi~ 181 (337)
-+++|+||||+|.++-.+... ..++++|||+.+|++.|.+.-.. =++.++|+..|++ ..+++||+|..
T Consensus 126 F~~~lDLGCGTGL~G~~lR~~--a~~ltGvDiS~nMl~kA~eKg~Y---------D~L~~Aea~~Fl~~~~~er~DLi~A 194 (287)
T COG4976 126 FRRMLDLGCGTGLTGEALRDM--ADRLTGVDISENMLAKAHEKGLY---------DTLYVAEAVLFLEDLTQERFDLIVA 194 (287)
T ss_pred cceeeecccCcCcccHhHHHH--HhhccCCchhHHHHHHHHhccch---------HHHHHHHHHHHhhhccCCcccchhh
Confidence 589999999999998877654 57899999999999999874211 1467788889998 46789999975
Q ss_pred eCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCC
Q 019699 182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG 220 (337)
Q Consensus 182 D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~ 220 (337)
----+.- | .| ..+|-. +...|+|||.|.+.+.
T Consensus 195 aDVl~Yl-G---~L--e~~~~~-aa~~L~~gGlfaFSvE 226 (287)
T COG4976 195 ADVLPYL-G---AL--EGLFAG-AAGLLAPGGLFAFSVE 226 (287)
T ss_pred hhHHHhh-c---ch--hhHHHH-HHHhcCCCceEEEEec
Confidence 3211110 1 12 235555 6899999999998764
No 175
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=98.23 E-value=3.2e-06 Score=70.24 Aligned_cols=93 Identities=22% Similarity=0.309 Sum_probs=66.1
Q ss_pred CCeEEEEccHHHHHhhcCCceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHH
Q 019699 156 PRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIY 235 (337)
Q Consensus 156 ~rv~v~~~D~~~~l~~~~~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~ 235 (337)
-+++++++|+++.+++...++|+|+.|.++|.. .| .|.+.++|+. +++++++||++++.+.. ..+.
T Consensus 31 v~L~L~~gDa~~~l~~l~~~~Da~ylDgFsP~~-nP--elWs~e~~~~-l~~~~~~~~~l~Tys~a----------~~Vr 96 (124)
T PF05430_consen 31 VTLTLWFGDAREMLPQLDARFDAWYLDGFSPAK-NP--ELWSEELFKK-LARLSKPGGTLATYSSA----------GAVR 96 (124)
T ss_dssp EEEEEEES-HHHHHHHB-T-EEEEEE-SS-TTT-SG--GGSSHHHHHH-HHHHEEEEEEEEES--B----------HHHH
T ss_pred EEEEEEEcHHHHHHHhCcccCCEEEecCCCCcC-Cc--ccCCHHHHHH-HHHHhCCCcEEEEeech----------HHHH
Confidence 356789999999999888999999999998863 44 7999999999 89999999999986521 2456
Q ss_pred HHHhhhcCceeEEEeeccccCCceEEEEEec
Q 019699 236 NTLRQVFKYVVPYSAHIPSFADTWGWIMASD 266 (337)
Q Consensus 236 ~~l~~vF~~v~~~~~~vP~~~~~~~~~~as~ 266 (337)
+.|.++-=.|. ..|.+++-..++.|++
T Consensus 97 ~~L~~aGF~v~----~~~g~g~Kr~~~~a~~ 123 (124)
T PF05430_consen 97 RALQQAGFEVE----KVPGFGRKREMLRAVK 123 (124)
T ss_dssp HHHHHCTEEEE----EEE-STTSSEEEEEEC
T ss_pred HHHHHcCCEEE----EcCCCCCcchheEEEc
Confidence 67777633332 3567776667788876
No 176
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.23 E-value=4e-06 Score=78.13 Aligned_cols=74 Identities=18% Similarity=0.362 Sum_probs=61.6
Q ss_pred CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (337)
Q Consensus 101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi 180 (337)
.+..+||+||+|.|.++..+++.. .+|++||+|+.+++.+++.+.. .++++++.+|+.++- -..||.|+
T Consensus 28 ~~~~~VLEIG~G~G~lt~~L~~~~--~~v~~vEid~~~~~~l~~~~~~------~~~v~ii~~D~~~~~---~~~~d~Vv 96 (258)
T PRK14896 28 TDGDPVLEIGPGKGALTDELAKRA--KKVYAIELDPRLAEFLRDDEIA------AGNVEIIEGDALKVD---LPEFNKVV 96 (258)
T ss_pred CCcCeEEEEeCccCHHHHHHHHhC--CEEEEEECCHHHHHHHHHHhcc------CCCEEEEEeccccCC---chhceEEE
Confidence 356899999999999999999873 6899999999999999987642 368999999987642 23589999
Q ss_pred EeCCC
Q 019699 181 GDLAD 185 (337)
Q Consensus 181 ~D~~d 185 (337)
.+++.
T Consensus 97 ~NlPy 101 (258)
T PRK14896 97 SNLPY 101 (258)
T ss_pred EcCCc
Confidence 99864
No 177
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.21 E-value=5.1e-06 Score=78.06 Aligned_cols=74 Identities=18% Similarity=0.265 Sum_probs=59.5
Q ss_pred CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (337)
Q Consensus 101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi 180 (337)
.+..+||+||||+|.++..++++. .+|+++|+|+++++.+++.+. +++++++.+|+.++--. .-.+|.|+
T Consensus 41 ~~~~~VLEiG~G~G~lt~~L~~~~--~~v~avE~d~~~~~~~~~~~~-------~~~v~~i~~D~~~~~~~-~~~~~~vv 110 (272)
T PRK00274 41 QPGDNVLEIGPGLGALTEPLLERA--AKVTAVEIDRDLAPILAETFA-------EDNLTIIEGDALKVDLS-ELQPLKVV 110 (272)
T ss_pred CCcCeEEEeCCCccHHHHHHHHhC--CcEEEEECCHHHHHHHHHhhc-------cCceEEEEChhhcCCHH-HcCcceEE
Confidence 456799999999999999999985 389999999999999988652 26899999998875211 11158999
Q ss_pred EeCC
Q 019699 181 GDLA 184 (337)
Q Consensus 181 ~D~~ 184 (337)
.+++
T Consensus 111 ~NlP 114 (272)
T PRK00274 111 ANLP 114 (272)
T ss_pred EeCC
Confidence 8875
No 178
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.17 E-value=5.6e-06 Score=73.98 Aligned_cols=120 Identities=21% Similarity=0.228 Sum_probs=83.7
Q ss_pred hhHHHHHHhHHHhcCCCCCeEEEEecchhHHHHHHHhc--CCCcEEEEEECChHHHHHHHhhhhhc------cCCCCCCC
Q 019699 86 FIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRH--KTVEKVVMCDIDEEVVEFCKSYLVVN------KEAFSDPR 157 (337)
Q Consensus 86 ~~Y~e~l~~~~l~~~~~p~~VLiIG~G~G~~~~~ll~~--~~~~~v~~VEid~~vi~~a~~~f~~~------~~~~~d~r 157 (337)
..|.++|-.+--. ..+.-+.|++|.|+|.++.-+... .+....++||.-+++++.+++++... ..-++.++
T Consensus 67 ~mha~~le~L~~~-L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~ 145 (237)
T KOG1661|consen 67 HMHATALEYLDDH-LQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGE 145 (237)
T ss_pred HHHHHHHHHHHHh-hccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCc
Confidence 4566655432211 245578999999999887665543 22334599999999999999987532 23466789
Q ss_pred eEEEEccHHHHHhhcCCceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCC
Q 019699 158 LELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG 220 (337)
Q Consensus 158 v~v~~~D~~~~l~~~~~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~ 220 (337)
+.++++|++.--. ...+||.|.+-+..+. .| +. +-..|+++|-+++-.+
T Consensus 146 l~ivvGDgr~g~~-e~a~YDaIhvGAaa~~--~p----------q~-l~dqL~~gGrllip~~ 194 (237)
T KOG1661|consen 146 LSIVVGDGRKGYA-EQAPYDAIHVGAAASE--LP----------QE-LLDQLKPGGRLLIPVG 194 (237)
T ss_pred eEEEeCCccccCC-ccCCcceEEEccCccc--cH----------HH-HHHhhccCCeEEEeec
Confidence 9999999987544 3578999999976543 23 23 3467889888877543
No 179
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=98.17 E-value=6.3e-06 Score=73.30 Aligned_cols=72 Identities=21% Similarity=0.303 Sum_probs=56.6
Q ss_pred CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHh-hcCCceeEE
Q 019699 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELE-SRKESYDVI 179 (337)
Q Consensus 101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~-~~~~~yDvI 179 (337)
+...+||+||||+|.++..+++.. ..++++||+++++++.+++ .+++++.+|+.+.+. ..+++||+|
T Consensus 12 ~~~~~iLDiGcG~G~~~~~l~~~~-~~~~~giD~s~~~i~~a~~-----------~~~~~~~~d~~~~l~~~~~~sfD~V 79 (194)
T TIGR02081 12 PPGSRVLDLGCGDGELLALLRDEK-QVRGYGIEIDQDGVLACVA-----------RGVNVIQGDLDEGLEAFPDKSFDYV 79 (194)
T ss_pred CCCCEEEEeCCCCCHHHHHHHhcc-CCcEEEEeCCHHHHHHHHH-----------cCCeEEEEEhhhcccccCCCCcCEE
Confidence 356799999999999998887764 4578999999999998864 246788889876543 234689999
Q ss_pred EEeCC
Q 019699 180 IGDLA 184 (337)
Q Consensus 180 i~D~~ 184 (337)
++...
T Consensus 80 i~~~~ 84 (194)
T TIGR02081 80 ILSQT 84 (194)
T ss_pred EEhhH
Confidence 99764
No 180
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.17 E-value=5.2e-05 Score=75.74 Aligned_cols=103 Identities=19% Similarity=0.256 Sum_probs=83.8
Q ss_pred CCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhc--CCceeEE
Q 019699 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR--KESYDVI 179 (337)
Q Consensus 102 ~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~--~~~yDvI 179 (337)
...+|||+=||.|.++..+++. ..+|++||++++.++.|+++...++ -.+++++.+|+.++.... ...+|+|
T Consensus 293 ~~~~vlDlYCGvG~f~l~lA~~--~~~V~gvEi~~~aV~~A~~NA~~n~----i~N~~f~~~~ae~~~~~~~~~~~~d~V 366 (432)
T COG2265 293 GGERVLDLYCGVGTFGLPLAKR--VKKVHGVEISPEAVEAAQENAAANG----IDNVEFIAGDAEEFTPAWWEGYKPDVV 366 (432)
T ss_pred CCCEEEEeccCCChhhhhhccc--CCEEEEEecCHHHHHHHHHHHHHcC----CCcEEEEeCCHHHHhhhccccCCCCEE
Confidence 4578999999999999999964 6899999999999999999987663 245999999999998775 3678999
Q ss_pred EEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCC
Q 019699 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG 220 (337)
Q Consensus 180 i~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~ 220 (337)
++|++-. |. ..++.+. + ..++|..++-+.+.
T Consensus 367 vvDPPR~---G~-----~~~~lk~-l-~~~~p~~IvYVSCN 397 (432)
T COG2265 367 VVDPPRA---GA-----DREVLKQ-L-AKLKPKRIVYVSCN 397 (432)
T ss_pred EECCCCC---CC-----CHHHHHH-H-HhcCCCcEEEEeCC
Confidence 9998632 32 3577776 3 47889998887764
No 181
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.16 E-value=4.8e-05 Score=73.42 Aligned_cols=106 Identities=25% Similarity=0.278 Sum_probs=87.2
Q ss_pred CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (337)
Q Consensus 101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi 180 (337)
.++..||++-+|-|.++..++++.. .+|.++||||..++..+++..+|+- ..+++.+.+|++++..+. ..+|-||
T Consensus 187 ~~GE~V~DmFAGVGpfsi~~Ak~g~-~~V~A~diNP~A~~~L~eNi~LN~v---~~~v~~i~gD~rev~~~~-~~aDrIi 261 (341)
T COG2520 187 KEGETVLDMFAGVGPFSIPIAKKGR-PKVYAIDINPDAVEYLKENIRLNKV---EGRVEPILGDAREVAPEL-GVADRII 261 (341)
T ss_pred cCCCEEEEccCCcccchhhhhhcCC-ceEEEEecCHHHHHHHHHHHHhcCc---cceeeEEeccHHHhhhcc-ccCCEEE
Confidence 4589999999999999999998753 4499999999999999999988752 456999999999998765 7899999
Q ss_pred EeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCCC
Q 019699 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPA 222 (337)
Q Consensus 181 ~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p 222 (337)
+..+. .+.+|+.. +.+.|+++|++-.....+
T Consensus 262 m~~p~----------~a~~fl~~-A~~~~k~~g~iHyy~~~~ 292 (341)
T COG2520 262 MGLPK----------SAHEFLPL-ALELLKDGGIIHYYEFVP 292 (341)
T ss_pred eCCCC----------cchhhHHH-HHHHhhcCcEEEEEeccc
Confidence 99863 12467776 778999999988765433
No 182
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=98.12 E-value=3.9e-06 Score=73.72 Aligned_cols=125 Identities=19% Similarity=0.301 Sum_probs=73.5
Q ss_pred CCCeEEEEecchhHHHHHHHhcC-CCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccH-----HHHHhh----
Q 019699 102 NPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDA-----RAELES---- 171 (337)
Q Consensus 102 ~p~~VLiIG~G~G~~~~~ll~~~-~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~-----~~~l~~---- 171 (337)
.+.+||+||++.|+++..++++. +..+|.+||+.+. .- -+.+..+.+|. .+.+.+
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~------~~---------~~~~~~i~~d~~~~~~~~~i~~~~~~ 87 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM------DP---------LQNVSFIQGDITNPENIKDIRKLLPE 87 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST------GS----------TTEEBTTGGGEEEEHSHHGGGSHGT
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEecccc------cc---------ccceeeeecccchhhHHHhhhhhccc
Confidence 67999999999999999999875 4689999999886 10 12333333332 223322
Q ss_pred cCCceeEEEEeCCCCCCCCCC------cCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhhcCce
Q 019699 172 RKESYDVIIGDLADPIEGGPC------YKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYV 245 (337)
Q Consensus 172 ~~~~yDvIi~D~~dp~~~~p~------~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~vF~~v 245 (337)
..+++|+|++|........+. ..|.. .-+.. +.+.|++||.+++..- ...+. ..+...++..|..+
T Consensus 88 ~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~-~~l~~-a~~~L~~gG~~v~K~~-----~~~~~-~~~~~~l~~~F~~v 159 (181)
T PF01728_consen 88 SGEKFDLVLSDMAPNVSGDRNIDEFISIRLIL-SQLLL-ALELLKPGGTFVIKVF-----KGPEI-EELIYLLKRCFSKV 159 (181)
T ss_dssp TTCSESEEEE-------SSHHSSHHHHHHHHH-HHHHH-HHHHHCTTEEEEEEES-----SSTTS-HHHHHHHHHHHHHE
T ss_pred cccCcceeccccccCCCCchhhHHHHHHHHHH-HHHHH-HHhhhcCCCEEEEEec-----cCccH-HHHHHHHHhCCeEE
Confidence 236899999999532211100 01111 12222 3467999998887642 22222 36777888888888
Q ss_pred eEEE
Q 019699 246 VPYS 249 (337)
Q Consensus 246 ~~~~ 249 (337)
..+.
T Consensus 160 ~~~K 163 (181)
T PF01728_consen 160 KIVK 163 (181)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7664
No 183
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=98.09 E-value=3.7e-05 Score=69.04 Aligned_cols=119 Identities=15% Similarity=0.129 Sum_probs=88.5
Q ss_pred ChhhHHHHHHhHHHhcCCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEc
Q 019699 84 DEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVIN 163 (337)
Q Consensus 84 de~~Y~e~l~~~~l~~~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~ 163 (337)
-|..|.++++.. ++ .+..+||.||.|-|.+...+.+.++. +-..+|-.|+|.+--|++-.. +..+|.+..+
T Consensus 86 WEtpiMha~A~a-i~--tkggrvLnVGFGMgIidT~iQe~~p~-~H~IiE~hp~V~krmr~~gw~-----ek~nViil~g 156 (271)
T KOG1709|consen 86 WETPIMHALAEA-IS--TKGGRVLNVGFGMGIIDTFIQEAPPD-EHWIIEAHPDVLKRMRDWGWR-----EKENVIILEG 156 (271)
T ss_pred hhhHHHHHHHHH-Hh--hCCceEEEeccchHHHHHHHhhcCCc-ceEEEecCHHHHHHHHhcccc-----cccceEEEec
Confidence 355566666542 22 67899999999999999999887764 567899999999999887543 2356777766
Q ss_pred cHHHHHhhc-CCceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699 164 DARAELESR-KESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (337)
Q Consensus 164 D~~~~l~~~-~~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~ 218 (337)
--.+.+.+. ++.||-|+-|.+.+. .--+++|++. +-+.|+|+|++..-
T Consensus 157 ~WeDvl~~L~d~~FDGI~yDTy~e~------yEdl~~~hqh-~~rLLkP~gv~Syf 205 (271)
T KOG1709|consen 157 RWEDVLNTLPDKHFDGIYYDTYSEL------YEDLRHFHQH-VVRLLKPEGVFSYF 205 (271)
T ss_pred chHhhhccccccCcceeEeechhhH------HHHHHHHHHH-HhhhcCCCceEEEe
Confidence 555555443 466999999998543 1124789998 79999999999754
No 184
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.09 E-value=2.6e-05 Score=72.44 Aligned_cols=73 Identities=22% Similarity=0.371 Sum_probs=59.6
Q ss_pred CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCcee---
Q 019699 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYD--- 177 (337)
Q Consensus 101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yD--- 177 (337)
.++.+||+||+|+|.++..+++.. .+++++|+|+.+++.+++.+.. +++++++.+|+.++-. ..||
T Consensus 28 ~~~~~VLEiG~G~G~lt~~L~~~~--~~v~~iE~d~~~~~~l~~~~~~------~~~v~v~~~D~~~~~~---~~~d~~~ 96 (253)
T TIGR00755 28 LEGDVVLEIGPGLGALTEPLLKRA--KKVTAIEIDPRLAEILRKLLSL------YERLEVIEGDALKVDL---PDFPKQL 96 (253)
T ss_pred CCcCEEEEeCCCCCHHHHHHHHhC--CcEEEEECCHHHHHHHHHHhCc------CCcEEEEECchhcCCh---hHcCCcc
Confidence 456899999999999999999875 4699999999999999987642 4789999999876422 2466
Q ss_pred EEEEeCC
Q 019699 178 VIIGDLA 184 (337)
Q Consensus 178 vIi~D~~ 184 (337)
+|+.+++
T Consensus 97 ~vvsNlP 103 (253)
T TIGR00755 97 KVVSNLP 103 (253)
T ss_pred eEEEcCC
Confidence 8888875
No 185
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.09 E-value=2.4e-05 Score=71.57 Aligned_cols=110 Identities=13% Similarity=0.073 Sum_probs=76.5
Q ss_pred CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhc--------cCCCCCCCeEEEEccHHHHHh--
Q 019699 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVN--------KEAFSDPRLELVINDARAELE-- 170 (337)
Q Consensus 101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~--------~~~~~d~rv~v~~~D~~~~l~-- 170 (337)
++..+||+.|||.|.-+..++.+. -+|++||+++..++.+.+-.... ...+...+++++++|.+++=.
T Consensus 42 ~~~~rvLvPgCGkg~D~~~LA~~G--~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~ 119 (226)
T PRK13256 42 NDSSVCLIPMCGCSIDMLFFLSKG--VKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIA 119 (226)
T ss_pred CCCCeEEEeCCCChHHHHHHHhCC--CcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccc
Confidence 456899999999999999999873 57999999999999876522110 001234689999999987621
Q ss_pred hcCCceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEE
Q 019699 171 SRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT 217 (337)
Q Consensus 171 ~~~~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~ 217 (337)
...++||+|+--.+--. -|+ . ....+.+. +.+.|+|||.++.
T Consensus 120 ~~~~~fD~VyDra~~~A--lpp-~-~R~~Y~~~-l~~lL~pgg~lll 161 (226)
T PRK13256 120 NNLPVFDIWYDRGAYIA--LPN-D-LRTNYAKM-MLEVCSNNTQILL 161 (226)
T ss_pred cccCCcCeeeeehhHhc--CCH-H-HHHHHHHH-HHHHhCCCcEEEE
Confidence 22357999875443211 121 2 24567777 7999999997654
No 186
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.06 E-value=3e-05 Score=71.71 Aligned_cols=93 Identities=15% Similarity=0.257 Sum_probs=67.0
Q ss_pred CCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEEE
Q 019699 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG 181 (337)
Q Consensus 102 ~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~ 181 (337)
...++|+||+|+|.++..+..++ .+|.+-|+++.|....++ ..++++-.| +| .+.+.+||+|.+
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f--~~v~aTE~S~~Mr~rL~~-----------kg~~vl~~~--~w-~~~~~~fDvIsc 157 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLF--KEVYATEASPPMRWRLSK-----------KGFTVLDID--DW-QQTDFKFDVISC 157 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhc--ceEEeecCCHHHHHHHHh-----------CCCeEEehh--hh-hccCCceEEEee
Confidence 46789999999999999998875 679999999999765544 234455333 33 345678999976
Q ss_pred -eCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699 182 -DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (337)
Q Consensus 182 -D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~ 218 (337)
+.-|-.. .| ...++. +++.|+|+|++++-
T Consensus 158 LNvLDRc~-~P------~~LL~~-i~~~l~p~G~lilA 187 (265)
T PF05219_consen 158 LNVLDRCD-RP------LTLLRD-IRRALKPNGRLILA 187 (265)
T ss_pred hhhhhccC-CH------HHHHHH-HHHHhCCCCEEEEE
Confidence 3333221 23 356677 79999999988764
No 187
>PRK10742 putative methyltransferase; Provisional
Probab=98.05 E-value=5.8e-05 Score=69.68 Aligned_cols=81 Identities=17% Similarity=0.117 Sum_probs=67.6
Q ss_pred eEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhc-c-CCCCC---CCeEEEEccHHHHHhhcCCceeEE
Q 019699 105 TIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVN-K-EAFSD---PRLELVINDARAELESRKESYDVI 179 (337)
Q Consensus 105 ~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~-~-~~~~d---~rv~v~~~D~~~~l~~~~~~yDvI 179 (337)
+|||+-+|.|..+.+++.. .++|++||-+|.+..+.++.+... . ..... .|++++.+|..+||+.....||+|
T Consensus 91 ~VLD~TAGlG~Da~~las~--G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~~~~fDVV 168 (250)
T PRK10742 91 DVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQVV 168 (250)
T ss_pred EEEECCCCccHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhCCCCCcEE
Confidence 8999999999999999987 356999999999999999887642 1 11112 579999999999999877789999
Q ss_pred EEeCCCCC
Q 019699 180 IGDLADPI 187 (337)
Q Consensus 180 i~D~~dp~ 187 (337)
++|+..|.
T Consensus 169 YlDPMfp~ 176 (250)
T PRK10742 169 YLDPMFPH 176 (250)
T ss_pred EECCCCCC
Confidence 99998665
No 188
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.05 E-value=0.00013 Score=64.08 Aligned_cols=127 Identities=21% Similarity=0.222 Sum_probs=90.6
Q ss_pred CCCCeEEEEecchhHHHHHHHhc-CCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEE
Q 019699 101 PNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (337)
Q Consensus 101 ~~p~~VLiIG~G~G~~~~~ll~~-~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvI 179 (337)
.+++=+|+||+|+|.+...+.+. .+.....+.||||...++.++-...+ .-++.++..|...-|+. ++-|++
T Consensus 42 ~~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n-----~~~~~~V~tdl~~~l~~--~~VDvL 114 (209)
T KOG3191|consen 42 HNPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCN-----RVHIDVVRTDLLSGLRN--ESVDVL 114 (209)
T ss_pred cCceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhc-----CCccceeehhHHhhhcc--CCccEE
Confidence 34788999999999999888775 24456789999999999988765544 34688999999888876 889999
Q ss_pred EEeCC-CCCCCCCC--------------cCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhh
Q 019699 180 IGDLA-DPIEGGPC--------------YKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV 241 (337)
Q Consensus 180 i~D~~-dp~~~~p~--------------~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~v 241 (337)
+.+++ .|....+- ..-.+..++.. +...|+|.|++.+.... ....+++++.+++-
T Consensus 115 vfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~-v~~iLSp~Gv~Ylv~~~------~N~p~ei~k~l~~~ 184 (209)
T KOG3191|consen 115 VFNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQ-VPDILSPRGVFYLVALR------ANKPKEILKILEKK 184 (209)
T ss_pred EECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhh-hhhhcCcCceEEeeehh------hcCHHHHHHHHhhc
Confidence 99987 33221221 11224567777 78999999999877532 22234566666544
No 189
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.03 E-value=2.5e-05 Score=68.51 Aligned_cols=108 Identities=23% Similarity=0.326 Sum_probs=64.7
Q ss_pred CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHH--h-hcCCcee
Q 019699 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAEL--E-SRKESYD 177 (337)
Q Consensus 101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l--~-~~~~~yD 177 (337)
..+++||+||+|.|..+..+++..+..+|++-|.++ +++.++.+...+.. ...+++++..-|--+-+ . ....+||
T Consensus 44 ~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~-~~~~~v~v~~L~Wg~~~~~~~~~~~~~D 121 (173)
T PF10294_consen 44 FRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGS-LLDGRVSVRPLDWGDELDSDLLEPHSFD 121 (173)
T ss_dssp TTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT---------EEEE--TTS-HHHHHHS-SSBS
T ss_pred cCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccc-cccccccCcEEEecCcccccccccccCC
Confidence 467899999999999998888875578999999999 99999998876532 23466776664432211 1 1246899
Q ss_pred EEEE-eCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699 178 VIIG-DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (337)
Q Consensus 178 vIi~-D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~ 218 (337)
+||. |.... .-.-..+.+. +++.|+++|.+++-
T Consensus 122 ~IlasDv~Y~-------~~~~~~L~~t-l~~ll~~~~~vl~~ 155 (173)
T PF10294_consen 122 VILASDVLYD-------EELFEPLVRT-LKRLLKPNGKVLLA 155 (173)
T ss_dssp EEEEES--S--------GGGHHHHHHH-HHHHBTT-TTEEEE
T ss_pred EEEEecccch-------HHHHHHHHHH-HHHHhCCCCEEEEE
Confidence 9986 43311 1123567776 78999999975544
No 190
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.00 E-value=1.6e-05 Score=72.43 Aligned_cols=108 Identities=14% Similarity=0.131 Sum_probs=75.3
Q ss_pred CCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHh-hhhhcc-------CCCCCCCeEEEEccHHHHHhh
Q 019699 100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKS-YLVVNK-------EAFSDPRLELVINDARAELES 171 (337)
Q Consensus 100 ~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~-~f~~~~-------~~~~d~rv~v~~~D~~~~l~~ 171 (337)
.+.+.+||+.|||.|.-+..++++ .-+|++||+++..++.+.+ +...+. ....+.+++++.+|.+++=..
T Consensus 35 ~~~~~rvLvPgCG~g~D~~~La~~--G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~ 112 (218)
T PF05724_consen 35 LKPGGRVLVPGCGKGYDMLWLAEQ--GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPE 112 (218)
T ss_dssp TSTSEEEEETTTTTSCHHHHHHHT--TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGS
T ss_pred CCCCCeEEEeCCCChHHHHHHHHC--CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChh
Confidence 355679999999999999999987 3689999999999998843 321110 012456899999999885443
Q ss_pred cCCceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCce
Q 019699 172 RKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGI 214 (337)
Q Consensus 172 ~~~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gv 214 (337)
..++||+|+=-.+--. -| .-....+.+. ++++|+|||.
T Consensus 113 ~~g~fD~iyDr~~l~A--lp--p~~R~~Ya~~-l~~ll~p~g~ 150 (218)
T PF05724_consen 113 DVGKFDLIYDRTFLCA--LP--PEMRERYAQQ-LASLLKPGGR 150 (218)
T ss_dssp CHHSEEEEEECSSTTT--S---GGGHHHHHHH-HHHCEEEEEE
T ss_pred hcCCceEEEEeccccc--CC--HHHHHHHHHH-HHHHhCCCCc
Confidence 3368999985444211 22 1234567777 8999999998
No 191
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.00 E-value=2.2e-05 Score=69.31 Aligned_cols=112 Identities=21% Similarity=0.220 Sum_probs=74.9
Q ss_pred CCCCeEEEEecchhHHHHHHHhcCCCcE---------EEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhh
Q 019699 101 PNPKTIFIMGGGEGSTAREILRHKTVEK---------VVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES 171 (337)
Q Consensus 101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~---------v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~ 171 (337)
.+...|||--||+|+++.|.+....... +.++|+|+++++.|++++.... -...+.+...|+.++- .
T Consensus 27 ~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag---~~~~i~~~~~D~~~l~-~ 102 (179)
T PF01170_consen 27 RPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAG---VEDYIDFIQWDARELP-L 102 (179)
T ss_dssp -TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT----CGGEEEEE--GGGGG-G
T ss_pred CCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcc---cCCceEEEecchhhcc-c
Confidence 4457899999999999999876533333 8999999999999999986432 1346889999987764 3
Q ss_pred cCCceeEEEEeCCCCCCCCC---CcCCchHHHHHHHhccccCCCceEEEe
Q 019699 172 RKESYDVIIGDLADPIEGGP---CYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (337)
Q Consensus 172 ~~~~yDvIi~D~~dp~~~~p---~~~L~t~ef~~~~~~~~L~p~Gvlv~~ 218 (337)
..+.+|+|++|++-....+. ...|| ..|++. +++.|++..++++.
T Consensus 103 ~~~~~d~IvtnPPyG~r~~~~~~~~~ly-~~~~~~-~~~~l~~~~v~l~~ 150 (179)
T PF01170_consen 103 PDGSVDAIVTNPPYGRRLGSKKDLEKLY-RQFLRE-LKRVLKPRAVFLTT 150 (179)
T ss_dssp TTSBSCEEEEE--STTSHCHHHHHHHHH-HHHHHH-HHCHSTTCEEEEEE
T ss_pred ccCCCCEEEECcchhhhccCHHHHHHHH-HHHHHH-HHHHCCCCEEEEEE
Confidence 35789999999975442111 01333 357777 68899995566554
No 192
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=97.98 E-value=3.4e-05 Score=81.23 Aligned_cols=114 Identities=15% Similarity=0.125 Sum_probs=78.9
Q ss_pred CCCeEEEEecchhHHHHHHHhcC-------C-----CcEEEEEECChH---HHHHH-----------Hhhhhh-------
Q 019699 102 NPKTIFIMGGGEGSTAREILRHK-------T-----VEKVVMCDIDEE---VVEFC-----------KSYLVV------- 148 (337)
Q Consensus 102 ~p~~VLiIG~G~G~~~~~ll~~~-------~-----~~~v~~VEid~~---vi~~a-----------~~~f~~------- 148 (337)
..-+||++|.|+|.-.....+.. + ..+++.+|.+|- -+..+ ++....
T Consensus 57 ~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 136 (662)
T PRK01747 57 RRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPG 136 (662)
T ss_pred CcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCC
Confidence 34789999999997544433211 1 247889998652 22211 111100
Q ss_pred -ccCCCCCC--CeEEEEccHHHHHhhcCCceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699 149 -NKEAFSDP--RLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (337)
Q Consensus 149 -~~~~~~d~--rv~v~~~D~~~~l~~~~~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~ 219 (337)
+.-.+++. +++++++|+++.+++...++|+|+.|.|+|.. .| .+.+.++|+. ++++++|||++++.+
T Consensus 137 ~~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~-np--~~W~~~~~~~-l~~~~~~~~~~~t~t 206 (662)
T PRK01747 137 CHRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAK-NP--DMWSPNLFNA-LARLARPGATLATFT 206 (662)
T ss_pred ceEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCcc-Ch--hhccHHHHHH-HHHHhCCCCEEEEee
Confidence 00112333 45688999999998877789999999998863 44 8999999999 899999999999764
No 193
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=97.97 E-value=4.2e-05 Score=72.72 Aligned_cols=77 Identities=23% Similarity=0.171 Sum_probs=64.5
Q ss_pred CCCeEEEEecchhHHHHHHHhcCC-CcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCC---cee
Q 019699 102 NPKTIFIMGGGEGSTAREILRHKT-VEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKE---SYD 177 (337)
Q Consensus 102 ~p~~VLiIG~G~G~~~~~ll~~~~-~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~---~yD 177 (337)
+...++|+++|.|+-+..+++..+ ..+|+++|+|+++++.|++.+.. ..|++++.+|..++.....+ ++|
T Consensus 19 pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~------~~ri~~i~~~f~~l~~~l~~~~~~vD 92 (296)
T PRK00050 19 PDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP------FGRFTLVHGNFSNLKEVLAEGLGKVD 92 (296)
T ss_pred CCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc------CCcEEEEeCCHHHHHHHHHcCCCccC
Confidence 346899999999999999998753 57999999999999999987532 25899999999988654333 799
Q ss_pred EEEEeCC
Q 019699 178 VIIGDLA 184 (337)
Q Consensus 178 vIi~D~~ 184 (337)
.|+.|+-
T Consensus 93 gIl~DLG 99 (296)
T PRK00050 93 GILLDLG 99 (296)
T ss_pred EEEECCC
Confidence 9999985
No 194
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=97.95 E-value=1.1e-05 Score=64.50 Aligned_cols=97 Identities=22% Similarity=0.160 Sum_probs=45.4
Q ss_pred EEEecchhHHHHHHHhcCC-C--cEEEEEECChH---HHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcC-CceeEE
Q 019699 107 FIMGGGEGSTAREILRHKT-V--EKVVMCDIDEE---VVEFCKSYLVVNKEAFSDPRLELVINDARAELESRK-ESYDVI 179 (337)
Q Consensus 107 LiIG~G~G~~~~~ll~~~~-~--~~v~~VEid~~---vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~-~~yDvI 179 (337)
|+||...|.++..+++... . .++++||..+. .-+..++ .. -..+++++.+|..+++.+.. ++||+|
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~-~~------~~~~~~~~~g~s~~~l~~~~~~~~dli 73 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKK-AG------LSDRVEFIQGDSPDFLPSLPDGPIDLI 73 (106)
T ss_dssp --------------------------EEEESS-------------GG------G-BTEEEEES-THHHHHHHHH--EEEE
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhh-cC------CCCeEEEEEcCcHHHHHHcCCCCEEEE
Confidence 6799888988877776422 2 37999999995 3333333 11 13579999999999987765 899999
Q ss_pred EEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (337)
Q Consensus 180 i~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~ 218 (337)
++|..... . .....++. +..+|+|||++++.
T Consensus 74 ~iDg~H~~------~-~~~~dl~~-~~~~l~~ggviv~d 104 (106)
T PF13578_consen 74 FIDGDHSY------E-AVLRDLEN-ALPRLAPGGVIVFD 104 (106)
T ss_dssp EEES---H------H-HHHHHHHH-HGGGEEEEEEEEEE
T ss_pred EECCCCCH------H-HHHHHHHH-HHHHcCCCeEEEEe
Confidence 99985211 1 23456676 78999999999875
No 195
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=97.87 E-value=5.3e-05 Score=68.35 Aligned_cols=125 Identities=18% Similarity=0.180 Sum_probs=84.3
Q ss_pred CCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEEE
Q 019699 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG 181 (337)
Q Consensus 102 ~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~ 181 (337)
.+.=+|+||||+|..+..+... .-..++|||+|.|++.|.+- ... -.++.+|--+-+.-.+++||.+|+
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~--Gh~wiGvDiSpsML~~a~~~-e~e--------gdlil~DMG~GlpfrpGtFDg~IS 118 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDS--GHQWIGVDISPSMLEQAVER-ELE--------GDLILCDMGEGLPFRPGTFDGVIS 118 (270)
T ss_pred CCcEEEEeccCCCcchheeccC--CceEEeecCCHHHHHHHHHh-hhh--------cCeeeeecCCCCCCCCCccceEEE
Confidence 3678999999999998777653 36789999999999999862 111 134555544555556799998887
Q ss_pred eCCCCCC-------CCCCcCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHH-HHhhhcCc
Q 019699 182 DLADPIE-------GGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYN-TLRQVFKY 244 (337)
Q Consensus 182 D~~dp~~-------~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~-~l~~vF~~ 244 (337)
=+.-.|- ..|...| ..||.. +..+|+.++..++|..+. +......+.. .+++-|..
T Consensus 119 ISAvQWLcnA~~s~~~P~~Rl--~~FF~t-Ly~~l~rg~raV~QfYpe----n~~q~d~i~~~a~~aGF~G 182 (270)
T KOG1541|consen 119 ISAVQWLCNADKSLHVPKKRL--LRFFGT-LYSCLKRGARAVLQFYPE----NEAQIDMIMQQAMKAGFGG 182 (270)
T ss_pred eeeeeeecccCccccChHHHH--HHHhhh-hhhhhccCceeEEEeccc----chHHHHHHHHHHHhhccCC
Confidence 6653331 1221222 368998 799999999999997532 3334444444 45555765
No 196
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=97.83 E-value=2.8e-05 Score=70.49 Aligned_cols=101 Identities=26% Similarity=0.427 Sum_probs=78.6
Q ss_pred CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCe--EEEEccHHHHHhhcCCceeE
Q 019699 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRL--ELVINDARAELESRKESYDV 178 (337)
Q Consensus 101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv--~v~~~D~~~~l~~~~~~yDv 178 (337)
..-..+++||||-|.+.+.+.+. ++++++++|.+..|++.|+.- +||.+ ...++| .++|.-..+++|+
T Consensus 71 k~fp~a~diGcs~G~v~rhl~~e-~vekli~~DtS~~M~~s~~~~--------qdp~i~~~~~v~D-EE~Ldf~ens~DL 140 (325)
T KOG2940|consen 71 KSFPTAFDIGCSLGAVKRHLRGE-GVEKLIMMDTSYDMIKSCRDA--------QDPSIETSYFVGD-EEFLDFKENSVDL 140 (325)
T ss_pred hhCcceeecccchhhhhHHHHhc-chhheeeeecchHHHHHhhcc--------CCCceEEEEEecc-hhcccccccchhh
Confidence 34467999999999999999987 489999999999999999863 35554 446677 5777666789999
Q ss_pred EEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (337)
Q Consensus 179 Ii~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~ 218 (337)
||+...-+|. ++| ...+.. |+..|+|+|+|+..
T Consensus 141 iisSlslHW~----NdL--Pg~m~~-ck~~lKPDg~Fias 173 (325)
T KOG2940|consen 141 IISSLSLHWT----NDL--PGSMIQ-CKLALKPDGLFIAS 173 (325)
T ss_pred hhhhhhhhhh----ccC--chHHHH-HHHhcCCCccchhH
Confidence 9999886663 122 134455 79999999999864
No 197
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=97.80 E-value=0.00013 Score=70.13 Aligned_cols=144 Identities=22% Similarity=0.103 Sum_probs=98.3
Q ss_pred hHHHHHHhHHHhcCCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEc-cH
Q 019699 87 IYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVIN-DA 165 (337)
Q Consensus 87 ~Y~e~l~~~~l~~~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~-D~ 165 (337)
.+.+.|+.++. ...+..|||=-||+|+++.|+.-. ..++.+.|||..+++-|+.++.... -+...++.. |+
T Consensus 184 ~lAR~mVNLa~--v~~G~~vlDPFcGTGgiLiEagl~--G~~viG~Did~~mv~gak~Nl~~y~----i~~~~~~~~~Da 255 (347)
T COG1041 184 RLARAMVNLAR--VKRGELVLDPFCGTGGILIEAGLM--GARVIGSDIDERMVRGAKINLEYYG----IEDYPVLKVLDA 255 (347)
T ss_pred HHHHHHHHHhc--cccCCEeecCcCCccHHHHhhhhc--CceEeecchHHHHHhhhhhhhhhhC----cCceeEEEeccc
Confidence 34566665333 355679999999999999998764 4789999999999999999997642 234555555 76
Q ss_pred HHHHhhcCCceeEEEEeCCCCCCCC-CC---cCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhh
Q 019699 166 RAELESRKESYDVIIGDLADPIEGG-PC---YKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV 241 (337)
Q Consensus 166 ~~~l~~~~~~yDvIi~D~~dp~~~~-p~---~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~v 241 (337)
.. +.-.++++|.|++|++-...+. .. ..|| .++++. +.++|++||.+++... . ..........
T Consensus 256 ~~-lpl~~~~vdaIatDPPYGrst~~~~~~l~~Ly-~~~le~-~~evLk~gG~~vf~~p----~------~~~~~~~~~~ 322 (347)
T COG1041 256 TN-LPLRDNSVDAIATDPPYGRSTKIKGEGLDELY-EEALES-ASEVLKPGGRIVFAAP----R------DPRHELEELG 322 (347)
T ss_pred cc-CCCCCCccceEEecCCCCcccccccccHHHHH-HHHHHH-HHHHhhcCcEEEEecC----C------cchhhHhhcC
Confidence 53 3333346999999998543221 11 1333 578888 7999999999998752 1 1122345556
Q ss_pred cCceeEEEee
Q 019699 242 FKYVVPYSAH 251 (337)
Q Consensus 242 F~~v~~~~~~ 251 (337)
|+.+..+...
T Consensus 323 f~v~~~~~~~ 332 (347)
T COG1041 323 FKVLGRFTMR 332 (347)
T ss_pred ceEEEEEEEe
Confidence 7777666543
No 198
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=97.80 E-value=0.0004 Score=61.61 Aligned_cols=98 Identities=22% Similarity=0.398 Sum_probs=71.1
Q ss_pred eEEEEecchhH--HHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEEEe
Q 019699 105 TIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGD 182 (337)
Q Consensus 105 ~VLiIG~G~G~--~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~D 182 (337)
+++|||.|+|- ++..++ .|..+++.||-...=+...+.-.... .=++++++.+.+.+ .....+||+|++-
T Consensus 51 ~~lDiGSGaGfPGipLaI~--~p~~~~~LvEs~~KK~~FL~~~~~~L----~L~nv~v~~~R~E~--~~~~~~fd~v~aR 122 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIA--RPDLQVTLVESVGKKVAFLKEVVREL----GLSNVEVINGRAEE--PEYRESFDVVTAR 122 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH---TTSEEEEEESSHHHHHHHHHHHHHH----T-SSEEEEES-HHH--TTTTT-EEEEEEE
T ss_pred eEEecCCCCCChhHHHHHh--CCCCcEEEEeCCchHHHHHHHHHHHh----CCCCEEEEEeeecc--cccCCCccEEEee
Confidence 89999999994 444444 46789999999998776665543321 12579999999888 4456899999999
Q ss_pred CCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCC
Q 019699 183 LADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGP 221 (337)
Q Consensus 183 ~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~ 221 (337)
+..+. ..++.. +...|+++|.+++.-|.
T Consensus 123 Av~~l----------~~l~~~-~~~~l~~~G~~l~~KG~ 150 (184)
T PF02527_consen 123 AVAPL----------DKLLEL-ARPLLKPGGRLLAYKGP 150 (184)
T ss_dssp SSSSH----------HHHHHH-HGGGEEEEEEEEEEESS
T ss_pred hhcCH----------HHHHHH-HHHhcCCCCEEEEEcCC
Confidence 87432 256676 78899999999887653
No 199
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=97.77 E-value=8.5e-05 Score=72.43 Aligned_cols=79 Identities=20% Similarity=0.239 Sum_probs=55.8
Q ss_pred CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhh---------
Q 019699 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES--------- 171 (337)
Q Consensus 101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~--------- 171 (337)
+.+.+|||+-||.|.++..+++. ..+|++||+++..++.|+++...+. -.+++++.+++.++...
T Consensus 195 ~~~~~vlDlycG~G~fsl~la~~--~~~V~gvE~~~~av~~A~~Na~~N~----i~n~~f~~~~~~~~~~~~~~~r~~~~ 268 (352)
T PF05958_consen 195 LSKGDVLDLYCGVGTFSLPLAKK--AKKVIGVEIVEEAVEDARENAKLNG----IDNVEFIRGDAEDFAKALAKAREFNR 268 (352)
T ss_dssp T-TTEEEEES-TTTCCHHHHHCC--SSEEEEEES-HHHHHHHHHHHHHTT------SEEEEE--SHHCCCHHCCS-GGTT
T ss_pred cCCCcEEEEeecCCHHHHHHHhh--CCeEEEeeCCHHHHHHHHHHHHHcC----CCcceEEEeeccchhHHHHhhHHHHh
Confidence 34458999999999999999886 4799999999999999999988763 35799998887655321
Q ss_pred ------cCCceeEEEEeCCC
Q 019699 172 ------RKESYDVIIGDLAD 185 (337)
Q Consensus 172 ------~~~~yDvIi~D~~d 185 (337)
...++|+|++|+|-
T Consensus 269 ~~~~~~~~~~~d~vilDPPR 288 (352)
T PF05958_consen 269 LKGIDLKSFKFDAVILDPPR 288 (352)
T ss_dssp GGGS-GGCTTESEEEE---T
T ss_pred hhhhhhhhcCCCEEEEcCCC
Confidence 12368999999863
No 200
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=97.77 E-value=0.00027 Score=66.50 Aligned_cols=109 Identities=17% Similarity=0.314 Sum_probs=64.1
Q ss_pred CCCeEEEEecchhHHHH-HHHh-cCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEE
Q 019699 102 NPKTIFIMGGGEGSTAR-EILR-HKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (337)
Q Consensus 102 ~p~~VLiIG~G~G~~~~-~ll~-~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvI 179 (337)
.|++|+.||+|.--++. .+++ |.....|+.+|+||+.++.+++-..... .+ ..+++++.+|+...-.+ -..||+|
T Consensus 120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~-~L-~~~m~f~~~d~~~~~~d-l~~~DvV 196 (276)
T PF03059_consen 120 PPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDL-GL-SKRMSFITADVLDVTYD-LKEYDVV 196 (276)
T ss_dssp ---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH----HH--SSEEEEES-GGGG-GG-----SEE
T ss_pred ccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcc-cc-cCCeEEEecchhccccc-cccCCEE
Confidence 47899999999765544 3433 3445789999999999999998765111 11 57899999998764322 3589999
Q ss_pred EEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (337)
Q Consensus 180 i~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~ 219 (337)
++.+.-.....+ ..+.+++ +.++++||..+++-.
T Consensus 197 ~lAalVg~~~e~-----K~~Il~~-l~~~m~~ga~l~~Rs 230 (276)
T PF03059_consen 197 FLAALVGMDAEP-----KEEILEH-LAKHMAPGARLVVRS 230 (276)
T ss_dssp EE-TT-S----S-----HHHHHHH-HHHHS-TTSEEEEEE
T ss_pred EEhhhcccccch-----HHHHHHH-HHhhCCCCcEEEEec
Confidence 999874321112 3578888 799999999999874
No 201
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=97.77 E-value=0.0002 Score=66.45 Aligned_cols=132 Identities=18% Similarity=0.170 Sum_probs=96.7
Q ss_pred HhcCCCCCeEEEEecchhHHHHHHHhc-CCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHH--HHhhcC
Q 019699 97 LLHHPNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA--ELESRK 173 (337)
Q Consensus 97 l~~~~~p~~VLiIG~G~G~~~~~ll~~-~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~--~l~~~~ 173 (337)
++.......||+-|.|+|++..++++. .|-.++...|..+.-.+.|++.|..+. -..++++.+.|... |..+ .
T Consensus 100 ~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hg---i~~~vt~~hrDVc~~GF~~k-s 175 (314)
T KOG2915|consen 100 MLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHG---IGDNVTVTHRDVCGSGFLIK-S 175 (314)
T ss_pred HhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhC---CCcceEEEEeecccCCcccc-c
Confidence 444456689999999999999999885 356799999999999999999987653 25689999988653 3332 5
Q ss_pred CceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhh-cCceeEEE
Q 019699 174 ESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV-FKYVVPYS 249 (337)
Q Consensus 174 ~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~v-F~~v~~~~ 249 (337)
..+|.|++|.+.||.+-| + +..+|+.+|..+++. +|+ .++.++....|++. |-++....
T Consensus 176 ~~aDaVFLDlPaPw~AiP--h----------a~~~lk~~g~r~csF-SPC----IEQvqrtce~l~~~gf~~i~~vE 235 (314)
T KOG2915|consen 176 LKADAVFLDLPAPWEAIP--H----------AAKILKDEGGRLCSF-SPC----IEQVQRTCEALRSLGFIEIETVE 235 (314)
T ss_pred cccceEEEcCCChhhhhh--h----------hHHHhhhcCceEEec-cHH----HHHHHHHHHHHHhCCCceEEEEE
Confidence 789999999999996555 1 345888888655554 332 45666666677764 66655443
No 202
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=97.75 E-value=6.8e-05 Score=71.89 Aligned_cols=105 Identities=14% Similarity=0.212 Sum_probs=72.8
Q ss_pred CCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEEE
Q 019699 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG 181 (337)
Q Consensus 102 ~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~ 181 (337)
+.+.||++|||+|.+..+.++.. ..+|.+||-+. +++.|++-+..+. + +..++++.+...+.. -..++.|+|++
T Consensus 60 ~dK~VlDVGcGtGILS~F~akAG-A~~V~aVe~S~-ia~~a~~iv~~N~--~-~~ii~vi~gkvEdi~-LP~eKVDiIvS 133 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAKAG-ARKVYAVEASS-IADFARKIVKDNG--L-EDVITVIKGKVEDIE-LPVEKVDIIVS 133 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHHhC-cceEEEEechH-HHHHHHHHHHhcC--c-cceEEEeecceEEEe-cCccceeEEee
Confidence 57899999999999999999874 78999999976 4588888776543 2 357888888876651 12489999999
Q ss_pred eCCCCCCCCCCcCCchHHHHHHHhccccCCCceEE
Q 019699 182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFV 216 (337)
Q Consensus 182 D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv 216 (337)
..--.. --.+.++..-.|.. .+.|+|||++.
T Consensus 134 EWMGy~--Ll~EsMldsVl~AR--dkwL~~~G~i~ 164 (346)
T KOG1499|consen 134 EWMGYF--LLYESMLDSVLYAR--DKWLKEGGLIY 164 (346)
T ss_pred hhhhHH--HHHhhhhhhhhhhh--hhccCCCceEc
Confidence 853111 00011222222322 47899999885
No 203
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=97.75 E-value=0.00019 Score=73.64 Aligned_cols=79 Identities=16% Similarity=0.229 Sum_probs=57.7
Q ss_pred CCCeEEEEecchhHHHHHHHhcCC--------CcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHH----
Q 019699 102 NPKTIFIMGGGEGSTAREILRHKT--------VEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAEL---- 169 (337)
Q Consensus 102 ~p~~VLiIG~G~G~~~~~ll~~~~--------~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l---- 169 (337)
...+||+.|||+|+++..++++.. ...+.++|||+..++.|+..+.... +...++..+|.....
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~----~~~~~i~~~d~l~~~~~~~ 106 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFA----LLEINVINFNSLSYVLLNI 106 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcC----CCCceeeeccccccccccc
Confidence 456999999999999988876531 2578999999999999998875432 223566666654321
Q ss_pred hhcCCceeEEEEeCC
Q 019699 170 ESRKESYDVIIGDLA 184 (337)
Q Consensus 170 ~~~~~~yDvIi~D~~ 184 (337)
....++||+||.++|
T Consensus 107 ~~~~~~fD~IIgNPP 121 (524)
T TIGR02987 107 ESYLDLFDIVITNPP 121 (524)
T ss_pred ccccCcccEEEeCCC
Confidence 112358999999997
No 204
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=97.70 E-value=0.00013 Score=67.68 Aligned_cols=78 Identities=19% Similarity=0.297 Sum_probs=62.5
Q ss_pred CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (337)
Q Consensus 101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi 180 (337)
.++.-||+||.|+|.++..+++. .++|++||+||.++....+.+.... ...+++++.+|. ++..-..||++|
T Consensus 57 k~tD~VLEvGPGTGnLT~~lLe~--~kkVvA~E~Dprmvael~krv~gtp---~~~kLqV~~gD~---lK~d~P~fd~cV 128 (315)
T KOG0820|consen 57 KPTDVVLEVGPGTGNLTVKLLEA--GKKVVAVEIDPRMVAELEKRVQGTP---KSGKLQVLHGDF---LKTDLPRFDGCV 128 (315)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHh--cCeEEEEecCcHHHHHHHHHhcCCC---ccceeeEEeccc---ccCCCcccceee
Confidence 45678999999999999999986 4899999999999987777664321 247899999995 444447899999
Q ss_pred EeCCCC
Q 019699 181 GDLADP 186 (337)
Q Consensus 181 ~D~~dp 186 (337)
.+.+..
T Consensus 129 sNlPyq 134 (315)
T KOG0820|consen 129 SNLPYQ 134 (315)
T ss_pred ccCCcc
Confidence 998743
No 205
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=97.68 E-value=8.6e-05 Score=69.36 Aligned_cols=75 Identities=24% Similarity=0.428 Sum_probs=61.6
Q ss_pred CCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhc--CCceeEE
Q 019699 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR--KESYDVI 179 (337)
Q Consensus 102 ~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~--~~~yDvI 179 (337)
+...||+||.|.|.++++++++. .++++||+|+..++..++.+. .+++++++.+|+.++-... ......|
T Consensus 30 ~~~~VlEiGpG~G~lT~~L~~~~--~~v~~vE~d~~~~~~L~~~~~------~~~~~~vi~~D~l~~~~~~~~~~~~~~v 101 (262)
T PF00398_consen 30 EGDTVLEIGPGPGALTRELLKRG--KRVIAVEIDPDLAKHLKERFA------SNPNVEVINGDFLKWDLYDLLKNQPLLV 101 (262)
T ss_dssp TTSEEEEESSTTSCCHHHHHHHS--SEEEEEESSHHHHHHHHHHCT------TCSSEEEEES-TTTSCGGGHCSSSEEEE
T ss_pred CCCEEEEeCCCCccchhhHhccc--CcceeecCcHhHHHHHHHHhh------hcccceeeecchhccccHHhhcCCceEE
Confidence 67899999999999999999975 899999999999999988765 2689999999998763222 2466788
Q ss_pred EEeCC
Q 019699 180 IGDLA 184 (337)
Q Consensus 180 i~D~~ 184 (337)
+.+++
T Consensus 102 v~NlP 106 (262)
T PF00398_consen 102 VGNLP 106 (262)
T ss_dssp EEEET
T ss_pred EEEec
Confidence 88875
No 206
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=97.67 E-value=0.00013 Score=63.15 Aligned_cols=80 Identities=10% Similarity=-0.039 Sum_probs=56.7
Q ss_pred EEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEEEeCCCCCCCCCCcCCchHHHHHHHhcccc
Q 019699 130 VMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRL 209 (337)
Q Consensus 130 ~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L 209 (337)
++||++++|++.|++....... ...++++++.+|+.+. ...+++||+|++...-.+ -+ -..+++++ ++++|
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~-~~~~~i~~~~~d~~~l-p~~~~~fD~v~~~~~l~~--~~----d~~~~l~e-i~rvL 71 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKAR-SCYKCIEWIEGDAIDL-PFDDCEFDAVTMGYGLRN--VV----DRLRAMKE-MYRVL 71 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccc-cCCCceEEEEechhhC-CCCCCCeeEEEecchhhc--CC----CHHHHHHH-HHHHc
Confidence 4799999999999876542110 0125799999998764 444578999998653222 11 13578898 89999
Q ss_pred CCCceEEEe
Q 019699 210 NPEGIFVTQ 218 (337)
Q Consensus 210 ~p~Gvlv~~ 218 (337)
+|||.+++.
T Consensus 72 kpGG~l~i~ 80 (160)
T PLN02232 72 KPGSRVSIL 80 (160)
T ss_pred CcCeEEEEE
Confidence 999988765
No 207
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=97.67 E-value=5.9e-05 Score=71.87 Aligned_cols=117 Identities=16% Similarity=0.183 Sum_probs=71.9
Q ss_pred cCCCCCeEEEEecchhHHHHHHHhc-------CCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhh
Q 019699 99 HHPNPKTIFIMGGGEGSTAREILRH-------KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES 171 (337)
Q Consensus 99 ~~~~p~~VLiIG~G~G~~~~~ll~~-------~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~ 171 (337)
......+||+-.||+|+++.++.++ ....++.++|+|+..+.+|+-++.... .......+..+|...--..
T Consensus 43 ~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~--~~~~~~~i~~~d~l~~~~~ 120 (311)
T PF02384_consen 43 NPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHG--IDNSNINIIQGDSLENDKF 120 (311)
T ss_dssp TT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTT--HHCBGCEEEES-TTTSHSC
T ss_pred hccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhc--ccccccccccccccccccc
Confidence 3344568999999999998888763 246789999999999999998765432 1123456888887543222
Q ss_pred c-CCceeEEEEeCCCCCC--CCC--C-----------cCCchHHHHHHHhccccCCCceEEEe
Q 019699 172 R-KESYDVIIGDLADPIE--GGP--C-----------YKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (337)
Q Consensus 172 ~-~~~yDvIi~D~~dp~~--~~p--~-----------~~L~t~ef~~~~~~~~L~p~Gvlv~~ 218 (337)
. .++||+|++++|-... ... . ..-....|.+. +-+.|+++|.+++-
T Consensus 121 ~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~-~l~~Lk~~G~~~~I 182 (311)
T PF02384_consen 121 IKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEH-ALSLLKPGGRAAII 182 (311)
T ss_dssp TST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHH-HHHTEEEEEEEEEE
T ss_pred ccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHH-HHhhcccccceeEE
Confidence 2 4689999999973221 000 0 00011247787 67899999976543
No 208
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=97.63 E-value=8.6e-05 Score=71.75 Aligned_cols=114 Identities=22% Similarity=0.277 Sum_probs=68.9
Q ss_pred CCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhh-hccCCCC-----CCCeEEEEccHHH-HHhh---
Q 019699 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLV-VNKEAFS-----DPRLELVINDARA-ELES--- 171 (337)
Q Consensus 102 ~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~-~~~~~~~-----d~rv~v~~~D~~~-~l~~--- 171 (337)
++.+||+||||-|+-+.-..+. .+..++++||++..|+.|++... ....... +=...++.+|... -|..
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~-~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~ 140 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKA-KIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLP 140 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHT-T-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSS
T ss_pred CCCeEEEecCCCchhHHHHHhc-CCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhcc
Confidence 6689999999977754444443 47899999999999999888662 1110000 1135677888752 1221
Q ss_pred -cCCceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699 172 -RKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (337)
Q Consensus 172 -~~~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~ 219 (337)
...+||+|-+-..-+. .-...-.-+.|++. +.++|+|||+++.-.
T Consensus 141 ~~~~~FDvVScQFalHY--~Fese~~ar~~l~N-vs~~Lk~GG~FIgT~ 186 (331)
T PF03291_consen 141 PRSRKFDVVSCQFALHY--AFESEEKARQFLKN-VSSLLKPGGYFIGTT 186 (331)
T ss_dssp STTS-EEEEEEES-GGG--GGSSHHHHHHHHHH-HHHTEEEEEEEEEEE
T ss_pred ccCCCcceeehHHHHHH--hcCCHHHHHHHHHH-HHHhcCCCCEEEEEe
Confidence 2358999988765221 00001122458999 799999999998754
No 209
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=97.59 E-value=0.00043 Score=63.47 Aligned_cols=68 Identities=12% Similarity=0.061 Sum_probs=44.9
Q ss_pred EEEEcCccccccCChhhHHHHHHhHHHhcCCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHH
Q 019699 71 ALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEF 141 (337)
Q Consensus 71 ~L~lDG~~q~~~~de~~Y~e~l~~~~l~~~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~ 141 (337)
.+.++|......+..+-..+++.+.+. ..+.+.||++|||+|.++..++++ +..+|++||+++.++..
T Consensus 46 ~I~v~~~~~~vsr~~~kL~~~l~~~~~--~~~~~~vlDiG~gtG~~t~~l~~~-ga~~v~avD~~~~~l~~ 113 (228)
T TIGR00478 46 KIELLQNPLFVSRGGEKLKEALEEFNI--DVKNKIVLDVGSSTGGFTDCALQK-GAKEVYGVDVGYNQLAE 113 (228)
T ss_pred EEeccCccchhhhhHHHHHHHHHhcCC--CCCCCEEEEcccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHH
Confidence 344554322222333334444443322 235678999999999999999987 57899999999977654
No 210
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=97.58 E-value=0.00026 Score=69.64 Aligned_cols=104 Identities=29% Similarity=0.361 Sum_probs=77.5
Q ss_pred CCeEEEEecchhHHHHHHHhc-CCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEEE
Q 019699 103 PKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG 181 (337)
Q Consensus 103 p~~VLiIG~G~G~~~~~ll~~-~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~ 181 (337)
+-+||+-=+|+|.=+...++. .+..+|++-|+|++.++..++++..+. ..+.++++...|+...+.....+||+|=+
T Consensus 50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~--~~~~~~~v~~~DAn~ll~~~~~~fD~IDl 127 (377)
T PF02005_consen 50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNG--LEDERIEVSNMDANVLLYSRQERFDVIDL 127 (377)
T ss_dssp -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT---SGCCEEEEES-HHHHHCHSTT-EEEEEE
T ss_pred CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhcc--ccCceEEEehhhHHHHhhhccccCCEEEe
Confidence 458999888899776555555 667899999999999999999988764 23348999999999998766789999999
Q ss_pred eCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699 182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (337)
Q Consensus 182 D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~ 219 (337)
|++- .| ..|++. +-+.++.||++++.+
T Consensus 128 DPfG----Sp------~pflds-A~~~v~~gGll~vTa 154 (377)
T PF02005_consen 128 DPFG----SP------APFLDS-ALQAVKDGGLLCVTA 154 (377)
T ss_dssp --SS------------HHHHHH-HHHHEEEEEEEEEEE
T ss_pred CCCC----Cc------cHhHHH-HHHHhhcCCEEEEec
Confidence 9872 22 368887 678999999998764
No 211
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=97.52 E-value=0.0022 Score=62.66 Aligned_cols=141 Identities=17% Similarity=0.136 Sum_probs=94.6
Q ss_pred HHhcCCC-CCeEEEEecchhHHHHHHHhcCC--CcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhc
Q 019699 96 ALLHHPN-PKTIFIMGGGEGSTAREILRHKT--VEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR 172 (337)
Q Consensus 96 ~l~~~~~-p~~VLiIG~G~G~~~~~ll~~~~--~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~ 172 (337)
+.+..+. ..+|||++++-|+=+..++..-. ...|+++|+|+.=++..++++...+ -.++.++..|++.+....
T Consensus 149 a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG----~~nv~~~~~d~~~~~~~~ 224 (355)
T COG0144 149 ALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLG----VRNVIVVNKDARRLAELL 224 (355)
T ss_pred HHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcC----CCceEEEecccccccccc
Confidence 4444444 58999999999987777776533 3457999999999999888876432 245889999998775543
Q ss_pred C--CceeEEEEeCCCCCC----CCCCc------------CCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHH
Q 019699 173 K--ESYDVIIGDLADPIE----GGPCY------------KLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCI 234 (337)
Q Consensus 173 ~--~~yDvIi~D~~dp~~----~~p~~------------~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i 234 (337)
. .+||.|++|++-... ..|.. .-+..+++.. +.+.|+|||+|+.-+.+. .++.-..+
T Consensus 225 ~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~-a~~~lk~GG~LVYSTCS~----~~eENE~v 299 (355)
T COG0144 225 PGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAA-ALKLLKPGGVLVYSTCSL----TPEENEEV 299 (355)
T ss_pred cccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHH-HHHhcCCCCEEEEEccCC----chhcCHHH
Confidence 3 369999999972211 01211 1124567777 688999999998765432 34444555
Q ss_pred HHHHhhhcCce
Q 019699 235 YNTLRQVFKYV 245 (337)
Q Consensus 235 ~~~l~~vF~~v 245 (337)
++.+-+-.+..
T Consensus 300 V~~~L~~~~~~ 310 (355)
T COG0144 300 VERFLERHPDF 310 (355)
T ss_pred HHHHHHhCCCc
Confidence 65555555543
No 212
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=97.52 E-value=0.00063 Score=72.20 Aligned_cols=82 Identities=13% Similarity=0.080 Sum_probs=63.1
Q ss_pred CCCeEEEEecchhHHHHHHHhc----C--------------------------------------CCcEEEEEECChHHH
Q 019699 102 NPKTIFIMGGGEGSTAREILRH----K--------------------------------------TVEKVVMCDIDEEVV 139 (337)
Q Consensus 102 ~p~~VLiIG~G~G~~~~~ll~~----~--------------------------------------~~~~v~~VEid~~vi 139 (337)
....++|-+||+|+++.|++.. + ...+++++|+|+.++
T Consensus 190 ~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~av 269 (702)
T PRK11783 190 EGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRVI 269 (702)
T ss_pred CCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHHH
Confidence 3578999999999999888652 0 123699999999999
Q ss_pred HHHHhhhhhccCCCCCCCeEEEEccHHHHHhhc-CCceeEEEEeCCCC
Q 019699 140 EFCKSYLVVNKEAFSDPRLELVINDARAELESR-KESYDVIIGDLADP 186 (337)
Q Consensus 140 ~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~-~~~yDvIi~D~~dp 186 (337)
+.|+++....+ + ..++++..+|+.++-... .++||+|++|+|..
T Consensus 270 ~~A~~N~~~~g--~-~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg 314 (702)
T PRK11783 270 QAARKNARRAG--V-AELITFEVKDVADLKNPLPKGPTGLVISNPPYG 314 (702)
T ss_pred HHHHHHHHHcC--C-CcceEEEeCChhhcccccccCCCCEEEECCCCc
Confidence 99999987543 2 357899999998764322 25799999999743
No 213
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=97.51 E-value=0.00014 Score=64.05 Aligned_cols=98 Identities=24% Similarity=0.283 Sum_probs=72.5
Q ss_pred CeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEEEeC
Q 019699 104 KTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDL 183 (337)
Q Consensus 104 ~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~D~ 183 (337)
.-+.++|+|+|.++..+++. .++|.++|.||...+.|++++..++ +.+++++.+|++.|=- +.-|+||+..
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~--A~rViAiE~dPk~a~~a~eN~~v~g----~~n~evv~gDA~~y~f---e~ADvvicEm 104 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHA--AERVIAIEKDPKRARLAEENLHVPG----DVNWEVVVGDARDYDF---ENADVVICEM 104 (252)
T ss_pred hceeeccCCcchHHHHHHhh--hceEEEEecCcHHHHHhhhcCCCCC----CcceEEEecccccccc---cccceeHHHH
Confidence 57899999999998776664 6899999999999999999986553 6789999999998732 5689999877
Q ss_pred CCCCCCCCCcCCchHH---HHHHHhccccCCCceEEEe
Q 019699 184 ADPIEGGPCYKLYTKS---FYEFVVKPRLNPEGIFVTQ 218 (337)
Q Consensus 184 ~dp~~~~p~~~L~t~e---f~~~~~~~~L~p~Gvlv~~ 218 (337)
-|.. |...+ .... +-+-|+.+|.++-|
T Consensus 105 lDTa-------Li~E~qVpV~n~-vleFLr~d~tiiPq 134 (252)
T COG4076 105 LDTA-------LIEEKQVPVINA-VLEFLRYDPTIIPQ 134 (252)
T ss_pred hhHH-------hhcccccHHHHH-HHHHhhcCCccccH
Confidence 5421 22222 2233 23466778877644
No 214
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=97.48 E-value=0.00054 Score=62.87 Aligned_cols=98 Identities=24% Similarity=0.319 Sum_probs=57.4
Q ss_pred CCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhh-cCCceeEEE
Q 019699 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDVII 180 (337)
Q Consensus 102 ~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~-~~~~yDvIi 180 (337)
..++||.||=.+.......+... .++|++||||+.+++..++..... .-.++.+..|.++-|.. ..++||+++
T Consensus 44 ~gk~il~lGDDDLtSlA~al~~~-~~~I~VvDiDeRll~fI~~~a~~~-----gl~i~~~~~DlR~~LP~~~~~~fD~f~ 117 (243)
T PF01861_consen 44 EGKRILFLGDDDLTSLALALTGL-PKRITVVDIDERLLDFINRVAEEE-----GLPIEAVHYDLRDPLPEELRGKFDVFF 117 (243)
T ss_dssp TT-EEEEES-TT-HHHHHHHHT---SEEEEE-S-HHHHHHHHHHHHHH-----T--EEEE---TTS---TTTSS-BSEEE
T ss_pred cCCEEEEEcCCcHHHHHHHhhCC-CCeEEEEEcCHHHHHHHHHHHHHc-----CCceEEEEecccccCCHHHhcCCCEEE
Confidence 57999999998887766666554 479999999999999988876543 12499999999988765 368999999
Q ss_pred EeCCCCCCCCCCcCCchHHHHHHHhccccCCCc
Q 019699 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEG 213 (337)
Q Consensus 181 ~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~G 213 (337)
.|++.... | . .-|... .-+.|+..|
T Consensus 118 TDPPyT~~-G--~----~LFlsR-gi~~Lk~~g 142 (243)
T PF01861_consen 118 TDPPYTPE-G--L----KLFLSR-GIEALKGEG 142 (243)
T ss_dssp E---SSHH-H--H----HHHHHH-HHHTB-STT
T ss_pred eCCCCCHH-H--H----HHHHHH-HHHHhCCCC
Confidence 99863210 1 1 235666 457888777
No 215
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=97.45 E-value=0.00063 Score=61.73 Aligned_cols=144 Identities=18% Similarity=0.258 Sum_probs=90.2
Q ss_pred CCCCeEEEEecchhHHHHHHHhcC-CCcEEEEEECChH----HHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhh--cC
Q 019699 101 PNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEE----VVEFCKSYLVVNKEAFSDPRLELVINDARAELES--RK 173 (337)
Q Consensus 101 ~~p~~VLiIG~G~G~~~~~ll~~~-~~~~v~~VEid~~----vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~--~~ 173 (337)
.+..+||-+|+++|++...+..-- +...|.+||.++. .+++|++ .+|+--+.+||+.--+- .-
T Consensus 72 k~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~----------R~NIiPIl~DAr~P~~Y~~lv 141 (229)
T PF01269_consen 72 KPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKK----------RPNIIPILEDARHPEKYRMLV 141 (229)
T ss_dssp -TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHH----------STTEEEEES-TTSGGGGTTTS
T ss_pred CCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhcc----------CCceeeeeccCCChHHhhccc
Confidence 346799999999999999998863 3668999999994 5566665 37888899999854322 13
Q ss_pred CceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe--CCCCCc-CCChhHHHHHHHHHhhh-cCceeEEE
Q 019699 174 ESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ--AGPAGI-FSHTEVFSCIYNTLRQV-FKYVVPYS 249 (337)
Q Consensus 174 ~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~--~~~p~~-~~~~~~~~~i~~~l~~v-F~~v~~~~ 249 (337)
+..|+|+.|...|. . .+-+..+ ++.-|++||.+++- +.+-.. ....+.+++..+.|++. |.-...
T Consensus 142 ~~VDvI~~DVaQp~--Q------a~I~~~N-a~~fLk~gG~~~i~iKa~siD~t~~p~~vf~~e~~~L~~~~~~~~e~-- 210 (229)
T PF01269_consen 142 EMVDVIFQDVAQPD--Q------ARIAALN-ARHFLKPGGHLIISIKARSIDSTADPEEVFAEEVKKLKEEGFKPLEQ-- 210 (229)
T ss_dssp --EEEEEEE-SSTT--H------HHHHHHH-HHHHEEEEEEEEEEEEHHHH-SSSSHHHHHHHHHHHHHCTTCEEEEE--
T ss_pred ccccEEEecCCChH--H------HHHHHHH-HHhhccCCcEEEEEEecCcccCcCCHHHHHHHHHHHHHHcCCChheE--
Confidence 68999999998654 1 1334455 56789999977653 221111 12346788888899874 554332
Q ss_pred eeccccCCceEEEEEe
Q 019699 250 AHIPSFADTWGWIMAS 265 (337)
Q Consensus 250 ~~vP~~~~~~~~~~as 265 (337)
..+..|.....+++|.
T Consensus 211 i~LePy~~dH~~vv~~ 226 (229)
T PF01269_consen 211 ITLEPYERDHAMVVGR 226 (229)
T ss_dssp EE-TTTSTTEEEEEEE
T ss_pred eccCCCCCCcEEEEEE
Confidence 2344454334455553
No 216
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=97.45 E-value=0.00066 Score=64.55 Aligned_cols=115 Identities=17% Similarity=0.190 Sum_probs=75.2
Q ss_pred CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCC--CCCeEEEEccHHHH-----HhhcC
Q 019699 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFS--DPRLELVINDARAE-----LESRK 173 (337)
Q Consensus 101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~--d~rv~v~~~D~~~~-----l~~~~ 173 (337)
+....+|++|||-|+-++-..+. ++..++++||...-|+-|++.........+ -=.+.++.+|...- +...+
T Consensus 116 ~~~~~~~~LgCGKGGDLlKw~kA-gI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~d 194 (389)
T KOG1975|consen 116 KRGDDVLDLGCGKGGDLLKWDKA-GIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKD 194 (389)
T ss_pred ccccccceeccCCcccHhHhhhh-cccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCC
Confidence 56678999999999887776664 578999999999999999886542211100 01367888887543 21123
Q ss_pred CceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699 174 ESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (337)
Q Consensus 174 ~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~ 219 (337)
.+||+|-+-..-+..-.. .---+-++++ +.++|+|||+++-..
T Consensus 195 p~fDivScQF~~HYaFet--ee~ar~~l~N-va~~LkpGG~FIgTi 237 (389)
T KOG1975|consen 195 PRFDIVSCQFAFHYAFET--EESARIALRN-VAKCLKPGGVFIGTI 237 (389)
T ss_pred CCcceeeeeeeEeeeecc--HHHHHHHHHH-HHhhcCCCcEEEEec
Confidence 449999776542210000 0011347788 789999999998653
No 217
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=97.45 E-value=0.0015 Score=61.81 Aligned_cols=138 Identities=13% Similarity=0.090 Sum_probs=94.6
Q ss_pred CCCCeEEEEecchhHHHHHHHhcC-CCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhc-CCceeE
Q 019699 101 PNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR-KESYDV 178 (337)
Q Consensus 101 ~~p~~VLiIG~G~G~~~~~ll~~~-~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~-~~~yDv 178 (337)
....+|||++++.|+=+..++... ....|+++|+++.=+...++++... .-.++.+...|+..+.... ...||.
T Consensus 84 ~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~----g~~~v~~~~~D~~~~~~~~~~~~fd~ 159 (283)
T PF01189_consen 84 QPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRL----GVFNVIVINADARKLDPKKPESKFDR 159 (283)
T ss_dssp TTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHT----T-SSEEEEESHHHHHHHHHHTTTEEE
T ss_pred cccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhc----CCceEEEEeeccccccccccccccch
Confidence 345789999999999887777653 3579999999999999988887643 2457888889999886543 346999
Q ss_pred EEEeCCCCCC----CCCCc------------CCchHHHHHHHhcccc----CCCceEEEeCCCCCcCCChhHHHHHHHHH
Q 019699 179 IIGDLADPIE----GGPCY------------KLYTKSFYEFVVKPRL----NPEGIFVTQAGPAGIFSHTEVFSCIYNTL 238 (337)
Q Consensus 179 Ii~D~~dp~~----~~p~~------------~L~t~ef~~~~~~~~L----~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l 238 (337)
|++|++-... ..|.. .-...+.++. +.+.+ +|||.++--+.+ . .++.-..+++.+
T Consensus 160 VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~-a~~~~~~~~k~gG~lvYsTCS---~-~~eENE~vV~~f 234 (283)
T PF01189_consen 160 VLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDN-AAKLLNIDFKPGGRLVYSTCS---L-SPEENEEVVEKF 234 (283)
T ss_dssp EEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHH-HHHCEHHHBEEEEEEEEEESH---H-HGGGTHHHHHHH
T ss_pred hhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHH-HHHhhcccccCCCeEEEEecc---H-HHHHHHHHHHHH
Confidence 9999972211 11210 1123567777 68899 999999865532 1 334444556655
Q ss_pred hhhcCceeE
Q 019699 239 RQVFKYVVP 247 (337)
Q Consensus 239 ~~vF~~v~~ 247 (337)
-+.+|+...
T Consensus 235 l~~~~~~~l 243 (283)
T PF01189_consen 235 LKRHPDFEL 243 (283)
T ss_dssp HHHSTSEEE
T ss_pred HHhCCCcEE
Confidence 555676543
No 218
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.37 E-value=0.001 Score=64.31 Aligned_cols=102 Identities=25% Similarity=0.315 Sum_probs=81.9
Q ss_pred CCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEEEe
Q 019699 103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGD 182 (337)
Q Consensus 103 p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~D 182 (337)
+++||+-=+|+|.=+...+..-+..+|++-||+|+.+++.+++...+. .....++..|+-.++.+....||+|=+|
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~----~~~~~v~n~DAN~lm~~~~~~fd~IDiD 128 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNS----GEDAEVINKDANALLHELHRAFDVIDID 128 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcC----cccceeecchHHHHHHhcCCCccEEecC
Confidence 889999999999877666655445599999999999999999998762 2345566699999998878899999999
Q ss_pred CCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699 183 LADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (337)
Q Consensus 183 ~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~ 219 (337)
++- .| .+|.+. +.+..+.+|++++-+
T Consensus 129 PFG----SP------aPFlDa-A~~s~~~~G~l~vTA 154 (380)
T COG1867 129 PFG----SP------APFLDA-ALRSVRRGGLLCVTA 154 (380)
T ss_pred CCC----CC------chHHHH-HHHHhhcCCEEEEEe
Confidence 882 23 257777 678888999998764
No 219
>PRK04148 hypothetical protein; Provisional
Probab=97.34 E-value=0.00058 Score=57.43 Aligned_cols=69 Identities=22% Similarity=0.167 Sum_probs=46.7
Q ss_pred CCCCeEEEEecchhH-HHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEE
Q 019699 101 PNPKTIFIMGGGEGS-TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (337)
Q Consensus 101 ~~p~~VLiIG~G~G~-~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvI 179 (337)
.+++++|+||+|.|. ++..+.+. ..+|+++|+|+..++.+++. .++++.+|.++-=.+.-+.+|+|
T Consensus 15 ~~~~kileIG~GfG~~vA~~L~~~--G~~ViaIDi~~~aV~~a~~~-----------~~~~v~dDlf~p~~~~y~~a~li 81 (134)
T PRK04148 15 GKNKKIVELGIGFYFKVAKKLKES--GFDVIVIDINEKAVEKAKKL-----------GLNAFVDDLFNPNLEIYKNAKLI 81 (134)
T ss_pred ccCCEEEEEEecCCHHHHHHHHHC--CCEEEEEECCHHHHHHHHHh-----------CCeEEECcCCCCCHHHHhcCCEE
Confidence 456899999999996 77777654 36899999999999988764 24556666432111111446666
Q ss_pred EEe
Q 019699 180 IGD 182 (337)
Q Consensus 180 i~D 182 (337)
.+-
T Consensus 82 ysi 84 (134)
T PRK04148 82 YSI 84 (134)
T ss_pred EEe
Confidence 654
No 220
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.33 E-value=0.00034 Score=59.35 Aligned_cols=92 Identities=17% Similarity=0.079 Sum_probs=64.3
Q ss_pred CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (337)
Q Consensus 101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi 180 (337)
-+.+++++||||.|-+..... .+..+.|.++||||+.++++.++..... -+..+...|...... ....||..+
T Consensus 47 iEgkkl~DLgcgcGmLs~a~s-m~~~e~vlGfDIdpeALEIf~rNaeEfE-----vqidlLqcdildle~-~~g~fDtav 119 (185)
T KOG3420|consen 47 IEGKKLKDLGCGCGMLSIAFS-MPKNESVLGFDIDPEALEIFTRNAEEFE-----VQIDLLQCDILDLEL-KGGIFDTAV 119 (185)
T ss_pred ccCcchhhhcCchhhhHHHhh-cCCCceEEeeecCHHHHHHHhhchHHhh-----hhhheeeeeccchhc-cCCeEeeEE
Confidence 467999999999999885544 4677899999999999999999864321 123555555443322 247899999
Q ss_pred EeCCCCCCCCCCcCCchHHHHHH
Q 019699 181 GDLADPIEGGPCYKLYTKSFYEF 203 (337)
Q Consensus 181 ~D~~dp~~~~p~~~L~t~ef~~~ 203 (337)
+|++.... ..-...+|.+.
T Consensus 120 iNppFGTk----~~~aDm~fv~~ 138 (185)
T KOG3420|consen 120 INPPFGTK----KKGADMEFVSA 138 (185)
T ss_pred ecCCCCcc----cccccHHHHHH
Confidence 99875431 12244577775
No 221
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=97.30 E-value=0.0071 Score=54.93 Aligned_cols=133 Identities=17% Similarity=0.223 Sum_probs=82.1
Q ss_pred CCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEEEe
Q 019699 103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGD 182 (337)
Q Consensus 103 p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~D 182 (337)
+++++|||.|.|-=+.-++-..+..++|.+|-...=+...++-... ++-++++++.+.+.++-.+... ||+|.+-
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~e----L~L~nv~i~~~RaE~~~~~~~~-~D~vtsR 142 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKE----LGLENVEIVHGRAEEFGQEKKQ-YDVVTSR 142 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHH----hCCCCeEEehhhHhhccccccc-CcEEEee
Confidence 7999999999995443333223456799999998866655443221 2346899999998888543223 9999998
Q ss_pred CCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhh-cCceeEEEeecccc
Q 019699 183 LADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV-FKYVVPYSAHIPSF 255 (337)
Q Consensus 183 ~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~v-F~~v~~~~~~vP~~ 255 (337)
+..+. ..+... +...|++||.+++.-+.. ..+.+.+.-+.+... |.....+....|.-
T Consensus 143 Ava~L----------~~l~e~-~~pllk~~g~~~~~k~~~----~~~e~~e~~~a~~~~~~~~~~~~~~~~p~~ 201 (215)
T COG0357 143 AVASL----------NVLLEL-CLPLLKVGGGFLAYKGLA----GKDELPEAEKAILPLGGQVEKVFSLTVPEL 201 (215)
T ss_pred hccch----------HHHHHH-HHHhcccCCcchhhhHHh----hhhhHHHHHHHHHhhcCcEEEEEEeecCCC
Confidence 87432 123343 678899999876543321 223344444444444 33333444455654
No 222
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=97.29 E-value=0.0003 Score=66.05 Aligned_cols=166 Identities=16% Similarity=0.157 Sum_probs=110.7
Q ss_pred ccccccEEEEeecCCCeEEEEEeCCCceEEEEcCccccccCChhhHHHHHHhHHHhcCCCCCeEEEEecchhHHHHHHHh
Q 019699 43 SFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILR 122 (337)
Q Consensus 43 ~~~~~~~l~~~~s~~q~I~V~~~~~~G~~L~lDG~~q~~~~de~~Y~e~l~~~~l~~~~~p~~VLiIG~G~G~~~~~ll~ 122 (337)
.++...|+..+.+++|++.+.. +..|.++.+++.....+.+ ..|.+.|+-- -+.++|.++|| +|....+.++
T Consensus 121 npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~s-k~y~p~la~g-----y~~~~v~l~iG-DG~~fl~~~~ 192 (337)
T KOG1562|consen 121 NPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESS-KQYLPTLACG-----YEGKKVKLLIG-DGFLFLEDLK 192 (337)
T ss_pred CCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHH-HHHhHHHhcc-----cCCCceEEEec-cHHHHHHHhc
Confidence 4566779999999999999988 6688999998877666555 4566665521 45678999888 9998888887
Q ss_pred cCCCcEEEEEECChHHHHHHHhh----hhhccCCCCCCCeEEEEccHHHHHhh---cCCceeEEEEeCCC-CCCCCCCcC
Q 019699 123 HKTVEKVVMCDIDEEVVEFCKSY----LVVNKEAFSDPRLELVINDARAELES---RKESYDVIIGDLAD-PIEGGPCYK 194 (337)
Q Consensus 123 ~~~~~~v~~VEid~~vi~~a~~~----f~~~~~~~~d~rv~v~~~D~~~~l~~---~~~~yDvIi~D~~d-p~~~~p~~~ 194 (337)
+. ...|+++|+|.-+..++..| |+.-..++....+.+.++|...+..+ ...+||-++-|..+ ++.+.|-..
T Consensus 193 ~~-~~dVii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ec~wl~~~~i~e~r~~~~~~f~~t~ya~ttvPTyp 271 (337)
T KOG1562|consen 193 EN-PFDVIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQGECMWLHLDYIKEGRSFCYVIFDLTAYAITTVPTYP 271 (337)
T ss_pred cC-CceEEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEecceehHHHHHHHHHHHhHHHhcCccceeeecCCCCc
Confidence 65 37899999999998888775 44334567788999999987654332 12455555555442 222122111
Q ss_pred CchHHHHHHHhccccCCCceEEEeCC
Q 019699 195 LYTKSFYEFVVKPRLNPEGIFVTQAG 220 (337)
Q Consensus 195 L~t~ef~~~~~~~~L~p~Gvlv~~~~ 220 (337)
.-.. -|.. +. .|+|+|-+..+..
T Consensus 272 sg~i-gf~l-~s-~~~~~~~~~~p~n 294 (337)
T KOG1562|consen 272 SGRI-GFML-CS-KLKPDGKYKTPGN 294 (337)
T ss_pred cceE-EEEE-ec-ccCCCCCccCCCC
Confidence 0000 1111 23 3999999877653
No 223
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=97.24 E-value=0.0018 Score=61.95 Aligned_cols=103 Identities=20% Similarity=0.327 Sum_probs=75.8
Q ss_pred CCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEEE
Q 019699 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG 181 (337)
Q Consensus 102 ~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~ 181 (337)
..+-||++|+|+|.+...++.. +.++|.+||-+. |.+-|++....+ .-..|+.++.|-..+. +.+++-|+||+
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqA-GA~~vYAvEAS~-MAqyA~~Lv~~N---~~~~rItVI~GKiEdi--eLPEk~DviIS 249 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQA-GAKKVYAVEASE-MAQYARKLVASN---NLADRITVIPGKIEDI--ELPEKVDVIIS 249 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHh-CcceEEEEehhH-HHHHHHHHHhcC---CccceEEEccCccccc--cCchhccEEEe
Confidence 3678999999999998877764 688999999964 888888876544 2347899998875443 34689999998
Q ss_pred eCCCCCCCCCCcCCchH---HHHHHHhccccCCCceEEEeC
Q 019699 182 DLADPIEGGPCYKLYTK---SFYEFVVKPRLNPEGIFVTQA 219 (337)
Q Consensus 182 D~~dp~~~~p~~~L~t~---ef~~~~~~~~L~p~Gvlv~~~ 219 (337)
.+- | ..|+.+ |-|-. +++.|+|+|.+.-..
T Consensus 250 EPM-----G--~mL~NERMLEsYl~-Ark~l~P~GkMfPT~ 282 (517)
T KOG1500|consen 250 EPM-----G--YMLVNERMLESYLH-ARKWLKPNGKMFPTV 282 (517)
T ss_pred ccc-----h--hhhhhHHHHHHHHH-HHhhcCCCCcccCcc
Confidence 853 1 234443 44555 589999999876443
No 224
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=97.23 E-value=0.0039 Score=58.73 Aligned_cols=130 Identities=16% Similarity=0.192 Sum_probs=88.3
Q ss_pred CCCCCeEEEEecchhHHHHHHHhcCCC--cEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHH--HhhcCCc
Q 019699 100 HPNPKTIFIMGGGEGSTAREILRHKTV--EKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE--LESRKES 175 (337)
Q Consensus 100 ~~~p~~VLiIG~G~G~~~~~ll~~~~~--~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~--l~~~~~~ 175 (337)
...|-+||+|.+|.|.-...++...+. .+|..+|.++.-++..++...... + ..-+++..+|+++. +.....+
T Consensus 133 ~g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~g--L-~~i~~f~~~dAfd~~~l~~l~p~ 209 (311)
T PF12147_consen 133 QGRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERG--L-EDIARFEQGDAFDRDSLAALDPA 209 (311)
T ss_pred cCCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcC--C-ccceEEEecCCCCHhHhhccCCC
Confidence 467899999999999988887775443 799999999999999998765432 2 23459999999875 4444567
Q ss_pred eeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhh
Q 019699 176 YDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV 241 (337)
Q Consensus 176 yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~v 241 (337)
.+++|+..-... -|.+.+.. .-+.. +.++|.|||.++. ++.| | |+ .++-+.+.|.++
T Consensus 210 P~l~iVsGL~El--F~Dn~lv~-~sl~g-l~~al~pgG~lIy-TgQP--w-HP-Qle~IAr~LtsH 266 (311)
T PF12147_consen 210 PTLAIVSGLYEL--FPDNDLVR-RSLAG-LARALEPGGYLIY-TGQP--W-HP-QLEMIARVLTSH 266 (311)
T ss_pred CCEEEEecchhh--CCcHHHHH-HHHHH-HHHHhCCCcEEEE-cCCC--C-Cc-chHHHHHHHhcc
Confidence 898887643111 01122222 23455 6789999998874 4444 4 33 345555666654
No 225
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=97.20 E-value=0.0015 Score=58.66 Aligned_cols=135 Identities=16% Similarity=0.114 Sum_probs=83.5
Q ss_pred CCCC-eEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccC-CCCCCCeEEEEccH-HHHHh---hcCC
Q 019699 101 PNPK-TIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKE-AFSDPRLELVINDA-RAELE---SRKE 174 (337)
Q Consensus 101 ~~p~-~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~-~~~d~rv~v~~~D~-~~~l~---~~~~ 174 (337)
+... +||+||+|+|.-+.+++++.|..+-.--|.|+....-.+.|...... ... +-+.+=+.+. ..+.. ...+
T Consensus 23 ~~~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~-~P~~lDv~~~~w~~~~~~~~~~~ 101 (204)
T PF06080_consen 23 PDSGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVR-PPLALDVSAPPWPWELPAPLSPE 101 (204)
T ss_pred CccCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccC-CCeEeecCCCCCccccccccCCC
Confidence 3344 59999999999999999998888888999999987666666543211 111 2233322221 22211 1246
Q ss_pred ceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCCCCcC---CChhHHHHHHHHHhhhcC
Q 019699 175 SYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIF---SHTEVFSCIYNTLRQVFK 243 (337)
Q Consensus 175 ~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~---~~~~~~~~i~~~l~~vF~ 243 (337)
.||+|++--.-+. .| ---+..+|+. +.++|++||+|++.. |... ...+.-...-+.|++.-|
T Consensus 102 ~~D~i~~~N~lHI--~p--~~~~~~lf~~-a~~~L~~gG~L~~YG--PF~~~G~~ts~SN~~FD~sLr~rdp 166 (204)
T PF06080_consen 102 SFDAIFCINMLHI--SP--WSAVEGLFAG-AARLLKPGGLLFLYG--PFNRDGKFTSESNAAFDASLRSRDP 166 (204)
T ss_pred CcceeeehhHHHh--cC--HHHHHHHHHH-HHHhCCCCCEEEEeC--CcccCCEeCCcHHHHHHHHHhcCCC
Confidence 8999998655333 22 1124678888 799999999999874 2111 123344455566666544
No 226
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.12 E-value=0.0038 Score=60.29 Aligned_cols=116 Identities=11% Similarity=0.067 Sum_probs=75.1
Q ss_pred CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (337)
Q Consensus 101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi 180 (337)
.+..++||||++.|+.+..++++. .+|++||..+---. ..++++|+.+.+|+..|... .+.+|+++
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~rG--~~V~AVD~g~l~~~-----------L~~~~~V~h~~~d~fr~~p~-~~~vDwvV 275 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRRG--MFVTAVDNGPMAQS-----------LMDTGQVEHLRADGFKFRPP-RKNVDWLV 275 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHcC--CEEEEEechhcCHh-----------hhCCCCEEEEeccCcccCCC-CCCCCEEE
Confidence 456899999999999999999873 49999996541111 12579999999999999754 57899999
Q ss_pred EeCCCCCCCCCCcCCchHHHHHHHhccccCCC--ceEEEeCCCCCcCCChhHHHHHHHHHhhhc
Q 019699 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPE--GIFVTQAGPAGIFSHTEVFSCIYNTLRQVF 242 (337)
Q Consensus 181 ~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~--Gvlv~~~~~p~~~~~~~~~~~i~~~l~~vF 242 (337)
+|... .| . ..++. +.+.|..| .-.++|.--|. ...-+..+.....+.+.+
T Consensus 276 cDmve----~P-~-----rva~l-m~~Wl~~g~cr~aIfnLKlpm-k~r~~~v~~~l~~i~~~l 327 (357)
T PRK11760 276 CDMVE----KP-A-----RVAEL-MAQWLVNGWCREAIFNLKLPM-KKRYEEVRQCLELIEEQL 327 (357)
T ss_pred Eeccc----CH-H-----HHHHH-HHHHHhcCcccEEEEEEEcCC-CCCHHHHHHHHHHHHHHH
Confidence 99874 23 1 22333 44455433 24455553331 223344444444555444
No 227
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.11 E-value=0.0036 Score=56.32 Aligned_cols=126 Identities=21% Similarity=0.275 Sum_probs=82.3
Q ss_pred CCCCeEEEEecchhHHHHHHHhcCC-CcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHH-----HHhh-cC
Q 019699 101 PNPKTIFIMGGGEGSTAREILRHKT-VEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA-----ELES-RK 173 (337)
Q Consensus 101 ~~p~~VLiIG~G~G~~~~~ll~~~~-~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~-----~l~~-~~ 173 (337)
.+...|++||+.-|+.+..+++.-+ ...|++||++|-- ..+.|.++.+|... -|.. .+
T Consensus 44 ~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~---------------~~~~V~~iq~d~~~~~~~~~l~~~l~ 108 (205)
T COG0293 44 KPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK---------------PIPGVIFLQGDITDEDTLEKLLEALG 108 (205)
T ss_pred cCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc---------------cCCCceEEeeeccCccHHHHHHHHcC
Confidence 4568999999999999999888643 2359999998721 12568888877642 2222 22
Q ss_pred -CceeEEEEeCCCCCCCCCC--cCCch----HHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhhcCcee
Q 019699 174 -ESYDVIIGDLADPIEGGPC--YKLYT----KSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVV 246 (337)
Q Consensus 174 -~~yDvIi~D~~dp~~~~p~--~~L~t----~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~vF~~v~ 246 (337)
...|+|++|...... |-. .+..+ .--++. +...|+++|.+++-. .+.+....+++.++..|..|.
T Consensus 109 ~~~~DvV~sD~ap~~~-g~~~~Dh~r~~~L~~~a~~~-a~~vL~~~G~fv~K~------fqg~~~~~~l~~~~~~F~~v~ 180 (205)
T COG0293 109 GAPVDVVLSDMAPNTS-GNRSVDHARSMYLCELALEF-ALEVLKPGGSFVAKV------FQGEDFEDLLKALRRLFRKVK 180 (205)
T ss_pred CCCcceEEecCCCCcC-CCccccHHHHHHHHHHHHHH-HHHeeCCCCeEEEEE------EeCCCHHHHHHHHHHhhceeE
Confidence 447999999873221 210 11111 112232 457899999998753 233445678899999999887
Q ss_pred EEE
Q 019699 247 PYS 249 (337)
Q Consensus 247 ~~~ 249 (337)
...
T Consensus 181 ~~K 183 (205)
T COG0293 181 IFK 183 (205)
T ss_pred Eec
Confidence 654
No 228
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=97.09 E-value=0.0012 Score=63.41 Aligned_cols=96 Identities=20% Similarity=0.225 Sum_probs=70.8
Q ss_pred CCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEEEe
Q 019699 103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGD 182 (337)
Q Consensus 103 p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~D 182 (337)
-.-.+|+|+|.|.+++.++.+++ +|.+++.|...+-.++.++. |.++-+.+|+++-+ .+-|+|++-
T Consensus 178 v~~avDvGgGiG~v~k~ll~~fp--~ik~infdlp~v~~~a~~~~--------~gV~~v~gdmfq~~----P~~daI~mk 243 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKYP--HIKGINFDLPFVLAAAPYLA--------PGVEHVAGDMFQDT----PKGDAIWMK 243 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhCC--CCceeecCHHHHHhhhhhhc--------CCcceecccccccC----CCcCeEEEE
Confidence 36789999999999999999875 49999999888877777653 33888889976543 345688876
Q ss_pred CC-CCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699 183 LA-DPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (337)
Q Consensus 183 ~~-dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~ 218 (337)
.- ..|.+ ..+ ..|+++ |++.|.|+|.+++-
T Consensus 244 WiLhdwtD---edc--vkiLkn-C~~sL~~~GkIiv~ 274 (342)
T KOG3178|consen 244 WILHDWTD---EDC--VKILKN-CKKSLPPGGKIIVV 274 (342)
T ss_pred eecccCCh---HHH--HHHHHH-HHHhCCCCCEEEEE
Confidence 54 22211 122 479999 79999999977653
No 229
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=97.05 E-value=0.0029 Score=56.76 Aligned_cols=127 Identities=15% Similarity=0.151 Sum_probs=64.4
Q ss_pred hhHHHHHHhHHHhcC---CCCCeEEEEecchhH----HHHHHHh---c-CC-CcEEEEEECChHHHHHHHhh--------
Q 019699 86 FIYHESLVHPALLHH---PNPKTIFIMGGGEGS----TAREILR---H-KT-VEKVVMCDIDEEVVEFCKSY-------- 145 (337)
Q Consensus 86 ~~Y~e~l~~~~l~~~---~~p~~VLiIG~G~G~----~~~~ll~---~-~~-~~~v~~VEid~~vi~~a~~~-------- 145 (337)
|..-+..+.++++.. ..+-+|+..||++|. ++..+.. . .+ ..+|.+.|||+.+++.|++=
T Consensus 12 f~~l~~~vlp~~~~~~~~~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~ 91 (196)
T PF01739_consen 12 FEALRDEVLPPLLARARPGRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLR 91 (196)
T ss_dssp HHHHHHHHH-------CS-S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGT
T ss_pred HHHHHHHHHHhhccccCCCCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHh
Confidence 333333443445422 356799999999994 3333333 1 11 35899999999999999862
Q ss_pred ----------h-hhccCCCC-----CCCeEEEEccHHHHHhhcCCceeEEEEeCC-CCCCCCCCcCCchHHHHHHHhccc
Q 019699 146 ----------L-VVNKEAFS-----DPRLELVINDARAELESRKESYDVIIGDLA-DPIEGGPCYKLYTKSFYEFVVKPR 208 (337)
Q Consensus 146 ----------f-~~~~~~~~-----d~rv~v~~~D~~~~l~~~~~~yDvIi~D~~-dp~~~~p~~~L~t~ef~~~~~~~~ 208 (337)
| ....+.+. ..++++...|..+ .....++||+|++--- --. ..-.....++. +.+.
T Consensus 92 ~~~~~~~~ryf~~~~~~~~~v~~~lr~~V~F~~~NL~~-~~~~~~~fD~I~CRNVlIYF-----~~~~~~~vl~~-l~~~ 164 (196)
T PF01739_consen 92 GLPPAYLRRYFTERDGGGYRVKPELRKMVRFRRHNLLD-PDPPFGRFDLIFCRNVLIYF-----DPETQQRVLRR-LHRS 164 (196)
T ss_dssp TS-HHHHHHHEEEE-CCCTTE-HHHHTTEEEEE--TT--S------EEEEEE-SSGGGS------HHHHHHHHHH-HGGG
T ss_pred hhHHHHHHHhccccCCCceeEChHHcCceEEEecccCC-CCcccCCccEEEecCEEEEe-----CHHHHHHHHHH-HHHH
Confidence 2 11000110 1467777777666 2223478999998632 000 01113457777 7899
Q ss_pred cCCCceEEEeC
Q 019699 209 LNPEGIFVTQA 219 (337)
Q Consensus 209 L~p~Gvlv~~~ 219 (337)
|+|||.|++-.
T Consensus 165 L~pgG~L~lG~ 175 (196)
T PF01739_consen 165 LKPGGYLFLGH 175 (196)
T ss_dssp EEEEEEEEE-T
T ss_pred cCCCCEEEEec
Confidence 99999998743
No 230
>KOG2730 consensus Methylase [General function prediction only]
Probab=97.02 E-value=0.0038 Score=56.53 Aligned_cols=78 Identities=19% Similarity=0.193 Sum_probs=54.1
Q ss_pred CCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhh---cCCceeE
Q 019699 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES---RKESYDV 178 (337)
Q Consensus 102 ~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~---~~~~yDv 178 (337)
.+..|++.-+|.|+-....+.++ ..|.++||||.=+..||.+....+ ..+ |++++.||..+.... .+..+|+
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~--~~VisIdiDPikIa~AkhNaeiYG--I~~-rItFI~GD~ld~~~~lq~~K~~~~~ 168 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQG--PYVIAIDIDPVKIACARHNAEVYG--VPD-RITFICGDFLDLASKLKADKIKYDC 168 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhC--CeEEEEeccHHHHHHHhccceeec--CCc-eeEEEechHHHHHHHHhhhhheeee
Confidence 55667775555444444444433 469999999999999999987653 234 999999998776544 3455778
Q ss_pred EEEeCC
Q 019699 179 IIGDLA 184 (337)
Q Consensus 179 Ii~D~~ 184 (337)
++..++
T Consensus 169 vf~spp 174 (263)
T KOG2730|consen 169 VFLSPP 174 (263)
T ss_pred eecCCC
Confidence 877653
No 231
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=96.93 E-value=0.0011 Score=60.68 Aligned_cols=107 Identities=25% Similarity=0.385 Sum_probs=71.6
Q ss_pred CCCeEEEEecchhHHHHHHHhcCCC--cEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHH-Hhh--cCCce
Q 019699 102 NPKTIFIMGGGEGSTAREILRHKTV--EKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE-LES--RKESY 176 (337)
Q Consensus 102 ~p~~VLiIG~G~G~~~~~ll~~~~~--~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~-l~~--~~~~y 176 (337)
.+.++|+||||.|.+..-+++..+. -+|.++|.+|..+++.+++-... ..|+...+-|.-.- +.. ..+..
T Consensus 71 ~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~-----e~~~~afv~Dlt~~~~~~~~~~~sv 145 (264)
T KOG2361|consen 71 SAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYD-----ESRVEAFVWDLTSPSLKEPPEEGSV 145 (264)
T ss_pred ChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccc-----hhhhcccceeccchhccCCCCcCcc
Confidence 3458999999999999999997665 78999999999999999875432 24555444443211 222 24678
Q ss_pred eEEEEeCC-CCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699 177 DVIIGDLA-DPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (337)
Q Consensus 177 DvIi~D~~-dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~ 219 (337)
|+|.+--. +.. .| ... ..-+.+ +.++|+|||.+++--
T Consensus 146 D~it~IFvLSAi--~p-ek~--~~a~~n-l~~llKPGG~llfrD 183 (264)
T KOG2361|consen 146 DIITLIFVLSAI--HP-EKM--QSVIKN-LRTLLKPGGSLLFRD 183 (264)
T ss_pred ceEEEEEEEecc--Ch-HHH--HHHHHH-HHHHhCCCcEEEEee
Confidence 87754332 111 22 221 234566 689999999998764
No 232
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=96.82 E-value=0.0034 Score=63.22 Aligned_cols=106 Identities=18% Similarity=0.348 Sum_probs=76.8
Q ss_pred CCeEEEEecchhHHHHHHHhc----CCCcEEEEEECChHHHHHHHh-hhhhccCCCCCCCeEEEEccHHHHHhhcCCcee
Q 019699 103 PKTIFIMGGGEGSTAREILRH----KTVEKVVMCDIDEEVVEFCKS-YLVVNKEAFSDPRLELVINDARAELESRKESYD 177 (337)
Q Consensus 103 p~~VLiIG~G~G~~~~~ll~~----~~~~~v~~VEid~~vi~~a~~-~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yD 177 (337)
...++++|+|-|-+.+..++. ....++.+||-+|..+-..+. .+.. + +.||+++.+|-|.|-.. .++-|
T Consensus 368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~----W-~~~Vtii~~DMR~w~ap-~eq~D 441 (649)
T KOG0822|consen 368 TTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFEC----W-DNRVTIISSDMRKWNAP-REQAD 441 (649)
T ss_pred eEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhh----h-cCeeEEEeccccccCCc-hhhcc
Confidence 456888999999887666652 223578899999998766554 2322 1 57999999999998632 37899
Q ss_pred EEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699 178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (337)
Q Consensus 178 vIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~ 219 (337)
+|++.+-... | ..+ .+.|-+.. +.+.|+|+||.+-..
T Consensus 442 I~VSELLGSF--G-DNE-LSPECLDG-~q~fLkpdgIsIP~s 478 (649)
T KOG0822|consen 442 IIVSELLGSF--G-DNE-LSPECLDG-AQKFLKPDGISIPSS 478 (649)
T ss_pred chHHHhhccc--c-Ccc-CCHHHHHH-HHhhcCCCceEccch
Confidence 9999886332 1 123 35688887 789999999987654
No 233
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=96.79 E-value=0.0046 Score=58.02 Aligned_cols=111 Identities=19% Similarity=0.193 Sum_probs=77.8
Q ss_pred CCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhh------------c---cC---------------
Q 019699 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVV------------N---KE--------------- 151 (337)
Q Consensus 102 ~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~------------~---~~--------------- 151 (337)
.+.+||+=|+|.|.++.++++. .-.+.+.|.+--|+=..+--+.. . .+
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~--G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPD 133 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKL--GYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPD 133 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhc--cceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCC
Confidence 4579999999999999999997 35899999999886544321110 0 00
Q ss_pred ------CCCCCCeEEEEccHHHHHhhc--CCceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCCC
Q 019699 152 ------AFSDPRLELVINDARAELESR--KESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPA 222 (337)
Q Consensus 152 ------~~~d~rv~v~~~D~~~~l~~~--~~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p 222 (337)
.-...++.+..||..++-... .++||+|+.--+-.. +..+ .++++. ++++|+|||+. +|.|+-
T Consensus 134 v~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDT----A~Ni--~~Yi~t-I~~lLkpgG~W-IN~GPL 204 (270)
T PF07942_consen 134 VDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDT----AENI--IEYIET-IEHLLKPGGYW-INFGPL 204 (270)
T ss_pred cCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeec----hHHH--HHHHHH-HHHHhccCCEE-EecCCc
Confidence 011357889999988776544 478999988765221 1233 378888 89999999965 587743
No 234
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=96.67 E-value=0.0063 Score=50.77 Aligned_cols=55 Identities=16% Similarity=0.215 Sum_probs=45.1
Q ss_pred EEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEcc
Q 019699 106 IFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVIND 164 (337)
Q Consensus 106 VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D 164 (337)
+|+||+|.|..+..+++..+..++.++|.+|...+.+++++..+. -++++++...
T Consensus 2 vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~----~~~v~~~~~a 56 (143)
T TIGR01444 2 VIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNN----LPNVVLLNAA 56 (143)
T ss_pred EEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcC----CCcEEEEEee
Confidence 799999999999999887766699999999999999999876542 1356666554
No 235
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=96.66 E-value=0.011 Score=57.73 Aligned_cols=111 Identities=22% Similarity=0.159 Sum_probs=79.7
Q ss_pred CCeEEEEecchhHHHHHHHhcCCC--------------------------------c-------EEEEEECChHHHHHHH
Q 019699 103 PKTIFIMGGGEGSTAREILRHKTV--------------------------------E-------KVVMCDIDEEVVEFCK 143 (337)
Q Consensus 103 p~~VLiIG~G~G~~~~~ll~~~~~--------------------------------~-------~v~~VEid~~vi~~a~ 143 (337)
.+..++==||+|+++.|++-.... . .+.++|||+.+++.|+
T Consensus 192 ~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~Ak 271 (381)
T COG0116 192 DEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEGAK 271 (381)
T ss_pred CCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHHHH
Confidence 368899999999999888765320 1 3779999999999999
Q ss_pred hhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEEEeCCCCCCCCC---CcCCchHHHHHHHhccccCCCceEEEeC
Q 019699 144 SYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGP---CYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (337)
Q Consensus 144 ~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~D~~dp~~~~p---~~~L~t~ef~~~~~~~~L~p~Gvlv~~~ 219 (337)
.+....+ -...+++..+|+..+-... +.+|+||+++|-..+-+- ...|| .+|-+. +++.++--+.+++-+
T Consensus 272 ~NA~~AG---v~d~I~f~~~d~~~l~~~~-~~~gvvI~NPPYGeRlg~~~~v~~LY-~~fg~~-lk~~~~~ws~~v~tt 344 (381)
T COG0116 272 ANARAAG---VGDLIEFKQADATDLKEPL-EEYGVVISNPPYGERLGSEALVAKLY-REFGRT-LKRLLAGWSRYVFTT 344 (381)
T ss_pred HHHHhcC---CCceEEEEEcchhhCCCCC-CcCCEEEeCCCcchhcCChhhHHHHH-HHHHHH-HHHHhcCCceEEEEc
Confidence 9865432 2467999999987663332 789999999985442111 11255 367776 788888877777653
No 236
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.65 E-value=0.034 Score=49.88 Aligned_cols=127 Identities=18% Similarity=0.244 Sum_probs=84.8
Q ss_pred CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHh--hcCCceeE
Q 019699 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELE--SRKESYDV 178 (337)
Q Consensus 101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~--~~~~~yDv 178 (337)
.+..+||-||+.+|++...+..--+...|.+||.++.+.+- .+.... +.+|+-=+.+||+.--+ ..-+.-|+
T Consensus 75 ~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~re---Ll~~a~---~R~Ni~PIL~DA~~P~~Y~~~Ve~VDv 148 (231)
T COG1889 75 KEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRE---LLDVAE---KRPNIIPILEDARKPEKYRHLVEKVDV 148 (231)
T ss_pred CCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHH---HHHHHH---hCCCceeeecccCCcHHhhhhcccccE
Confidence 56789999999999999999987666789999999986542 222111 24667778888863211 11256999
Q ss_pred EEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCc--eEEEeCCCCCcCCC-hhHHHHHHHHHhhhc
Q 019699 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEG--IFVTQAGPAGIFSH-TEVFSCIYNTLRQVF 242 (337)
Q Consensus 179 Ii~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~G--vlv~~~~~p~~~~~-~~~~~~i~~~l~~vF 242 (337)
|+.|...|.. .+-+-.+ +..-|+++| ++++.+.|-....+ .+.+++-.+.|++-+
T Consensus 149 iy~DVAQp~Q--------a~I~~~N-a~~FLk~~G~~~i~iKArSIdvT~dp~~vf~~ev~kL~~~~ 206 (231)
T COG1889 149 IYQDVAQPNQ--------AEILADN-AEFFLKKGGYVVIAIKARSIDVTADPEEVFKDEVEKLEEGG 206 (231)
T ss_pred EEEecCCchH--------HHHHHHH-HHHhcccCCeEEEEEEeecccccCCHHHHHHHHHHHHHhcC
Confidence 9999986641 1234455 577899999 55555443322222 456776777777664
No 237
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=96.52 E-value=0.016 Score=55.34 Aligned_cols=78 Identities=21% Similarity=0.209 Sum_probs=63.5
Q ss_pred CCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhh---cC-Ccee
Q 019699 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES---RK-ESYD 177 (337)
Q Consensus 102 ~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~---~~-~~yD 177 (337)
++..++|.=+|.|+-+..+++..+..+|.++|.|+.+++.|++.+... ..|++++.++..++.+. .+ +++|
T Consensus 20 ~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~-----~~R~~~i~~nF~~l~~~l~~~~~~~vD 94 (305)
T TIGR00006 20 PDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDF-----EGRVVLIHDNFANFFEHLDELLVTKID 94 (305)
T ss_pred CCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhc-----CCcEEEEeCCHHHHHHHHHhcCCCccc
Confidence 446899999999999999998754589999999999999999976432 36899999998876432 22 5799
Q ss_pred EEEEeCC
Q 019699 178 VIIGDLA 184 (337)
Q Consensus 178 vIi~D~~ 184 (337)
.|+.|+-
T Consensus 95 gIl~DLG 101 (305)
T TIGR00006 95 GILVDLG 101 (305)
T ss_pred EEEEecc
Confidence 9999985
No 238
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=96.52 E-value=0.023 Score=51.30 Aligned_cols=109 Identities=16% Similarity=0.139 Sum_probs=58.8
Q ss_pred CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhc-----cCCCCCCCeEEEEccHHH--HHhhcC
Q 019699 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVN-----KEAFSDPRLELVINDARA--ELESRK 173 (337)
Q Consensus 101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~-----~~~~~d~rv~v~~~D~~~--~l~~~~ 173 (337)
.+..-.+|||+|.|.+...++...+..+..+||+.+...+.|++..... .-.....+++++.+|..+ +....-
T Consensus 41 ~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~~~~~~ 120 (205)
T PF08123_consen 41 TPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDFVKDIW 120 (205)
T ss_dssp -TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHHHHHHG
T ss_pred CCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccHhHhhhh
Confidence 4456789999999999877776656788999999999999887643210 011234678899888653 222222
Q ss_pred CceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEE
Q 019699 174 ESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT 217 (337)
Q Consensus 174 ~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~ 217 (337)
..-|+|+++.+-- .+ .|. ..+.. ....|++|-.++.
T Consensus 121 s~AdvVf~Nn~~F---~~--~l~--~~L~~-~~~~lk~G~~IIs 156 (205)
T PF08123_consen 121 SDADVVFVNNTCF---DP--DLN--LALAE-LLLELKPGARIIS 156 (205)
T ss_dssp HC-SEEEE--TTT----H--HHH--HHHHH-HHTTS-TT-EEEE
T ss_pred cCCCEEEEecccc---CH--HHH--HHHHH-HHhcCCCCCEEEE
Confidence 4579999986521 11 111 12233 2356787776664
No 239
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=96.51 E-value=0.016 Score=52.26 Aligned_cols=140 Identities=16% Similarity=0.157 Sum_probs=88.2
Q ss_pred EEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEEEeCCC
Q 019699 106 IFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLAD 185 (337)
Q Consensus 106 VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~D~~d 185 (337)
|.||||-=|.++.++++.....++.++||++.-++.|++...... ...+++++.+||.+-+... +..|.|++-.
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~---l~~~i~~rlgdGL~~l~~~-e~~d~ivIAG-- 74 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYG---LEDRIEVRLGDGLEVLKPG-EDVDTIVIAG-- 74 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT----TTTEEEEE-SGGGG--GG-G---EEEEEE--
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcC---CcccEEEEECCcccccCCC-CCCCEEEEec--
Confidence 689999999999999998777899999999999999999986542 2469999999999988542 3369888873
Q ss_pred CCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhh-cCceeEEEeeccccCCceEEEEE
Q 019699 186 PIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV-FKYVVPYSAHIPSFADTWGWIMA 264 (337)
Q Consensus 186 p~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~v-F~~v~~~~~~vP~~~~~~~~~~a 264 (337)
.... ...++++. ....++..-.|++|-. .+. ..+.+.|.+. |..+.-..+. .-+....++.|
T Consensus 75 -----MGG~-lI~~ILe~-~~~~~~~~~~lILqP~-----~~~---~~LR~~L~~~gf~I~~E~lv~--e~~~~YeIi~~ 137 (205)
T PF04816_consen 75 -----MGGE-LIIEILEA-GPEKLSSAKRLILQPN-----THA---YELRRWLYENGFEIIDEDLVE--ENGRFYEIIVA 137 (205)
T ss_dssp -----E-HH-HHHHHHHH-TGGGGTT--EEEEEES-----S-H---HHHHHHHHHTTEEEEEEEEEE--ETTEEEEEEEE
T ss_pred -----CCHH-HHHHHHHh-hHHHhccCCeEEEeCC-----CCh---HHHHHHHHHCCCEEEEeEEEe--ECCEEEEEEEE
Confidence 3222 34577777 5667776667888731 222 3445566655 5544322211 10112345677
Q ss_pred ecCC
Q 019699 265 SDSP 268 (337)
Q Consensus 265 s~~p 268 (337)
++..
T Consensus 138 ~~~~ 141 (205)
T PF04816_consen 138 ERGE 141 (205)
T ss_dssp EESS
T ss_pred EeCC
Confidence 7654
No 240
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=96.43 E-value=0.0076 Score=57.19 Aligned_cols=111 Identities=19% Similarity=0.192 Sum_probs=64.7
Q ss_pred CCCeEEEEecchhH----HHHHHHhcC----CCcEEEEEECChHHHHHHHhhh-hhc--cC--------CC------C--
Q 019699 102 NPKTIFIMGGGEGS----TAREILRHK----TVEKVVMCDIDEEVVEFCKSYL-VVN--KE--------AF------S-- 154 (337)
Q Consensus 102 ~p~~VLiIG~G~G~----~~~~ll~~~----~~~~v~~VEid~~vi~~a~~~f-~~~--~~--------~~------~-- 154 (337)
.+-||...||++|. ++..+.+.. ...+|++.|||+.+++.|++-. +.. .+ -| .
T Consensus 115 ~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~ 194 (287)
T PRK10611 115 GEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEG 194 (287)
T ss_pred CCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCc
Confidence 45799999999994 333333321 1357999999999999998731 100 00 00 0
Q ss_pred --------CCCeEEEEccHHHHHhhcCCceeEEEEeC-CCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699 155 --------DPRLELVINDARAELESRKESYDVIIGDL-ADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (337)
Q Consensus 155 --------d~rv~v~~~D~~~~l~~~~~~yDvIi~D~-~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~ 218 (337)
..+|++...|..+.-....+.||+|++-- .-.. . .-.....++. +.+.|+|||.|++-
T Consensus 195 ~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF--~---~~~~~~vl~~-l~~~L~pgG~L~lG 261 (287)
T PRK10611 195 LVRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYF--D---KTTQERILRR-FVPLLKPDGLLFAG 261 (287)
T ss_pred eEEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcC--C---HHHHHHHHHH-HHHHhCCCcEEEEe
Confidence 12444444444321000136799999842 1111 0 0123467777 78999999998874
No 241
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=96.33 E-value=0.0037 Score=62.50 Aligned_cols=105 Identities=18% Similarity=0.199 Sum_probs=82.0
Q ss_pred CCCCeEEEEecchhHHH-HHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcC---Cce
Q 019699 101 PNPKTIFIMGGGEGSTA-REILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRK---ESY 176 (337)
Q Consensus 101 ~~p~~VLiIG~G~G~~~-~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~---~~y 176 (337)
.++-+||+.=+++|.-+ |++...+++.+|++-|.|+..++..+++...+. .+..++....|+...+-... ++|
T Consensus 108 ~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~---v~~ive~~~~DA~~lM~~~~~~~~~F 184 (525)
T KOG1253|consen 108 EKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNG---VEDIVEPHHSDANVLMYEHPMVAKFF 184 (525)
T ss_pred cCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcC---chhhcccccchHHHHHHhcccccccc
Confidence 45678898777777654 444445778899999999999999999887763 35688999999988765554 889
Q ss_pred eEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699 177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (337)
Q Consensus 177 DvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~ 219 (337)
|+|=+|++- .| ..|++. +-+.+++||+|++-+
T Consensus 185 DvIDLDPyG----s~------s~FLDs-Avqav~~gGLL~vT~ 216 (525)
T KOG1253|consen 185 DVIDLDPYG----SP------SPFLDS-AVQAVRDGGLLCVTC 216 (525)
T ss_pred ceEecCCCC----Cc------cHHHHH-HHHHhhcCCEEEEEe
Confidence 999999872 12 268887 788999999998754
No 242
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=96.26 E-value=0.026 Score=53.16 Aligned_cols=47 Identities=19% Similarity=0.329 Sum_probs=38.8
Q ss_pred CCCCeEEEEecchhHHHHHHHhcC-CCcEEEEEECChHHHHHHHhhhh
Q 019699 101 PNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLV 147 (337)
Q Consensus 101 ~~p~~VLiIG~G~G~~~~~ll~~~-~~~~v~~VEid~~vi~~a~~~f~ 147 (337)
-.|++|||+|+|.|+.+-.+.... ...++++||.++.++++++.-+.
T Consensus 32 f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~ 79 (274)
T PF09243_consen 32 FRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLR 79 (274)
T ss_pred CCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHh
Confidence 368999999999998776665543 46789999999999999998664
No 243
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=96.16 E-value=0.13 Score=48.35 Aligned_cols=148 Identities=16% Similarity=0.208 Sum_probs=90.7
Q ss_pred eEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhc-CCceeEEEEeC
Q 019699 105 TIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR-KESYDVIIGDL 183 (337)
Q Consensus 105 ~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~-~~~yDvIi~D~ 183 (337)
+|+++.+|.|++...+.+. +...+.++|+|+..++..+.+++.. ++.+|..++.... ...+|+|+.++
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~-G~~~v~a~e~~~~a~~~~~~N~~~~----------~~~~Di~~~~~~~~~~~~D~l~~gp 70 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKA-GFEIVAANEIDKSAAETYEANFPNK----------LIEGDITKIDEKDFIPDIDLLTGGF 70 (275)
T ss_pred cEEEEccCcchHHHHHHHc-CCEEEEEEeCCHHHHHHHHHhCCCC----------CccCccccCchhhcCCCCCEEEeCC
Confidence 6899999999998777664 4677889999999999999887521 5567766654433 45799999998
Q ss_pred CC-CCC-CC-------CCcCCchHHHHHHHhccccCCCceEEEeCCCCCcCC--ChhHHHHHHHHHhhhcCceeEEEeec
Q 019699 184 AD-PIE-GG-------PCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFS--HTEVFSCIYNTLRQVFKYVVPYSAHI 252 (337)
Q Consensus 184 ~d-p~~-~~-------p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~--~~~~~~~i~~~l~~vF~~v~~~~~~v 252 (337)
+= +.. .+ +-..|+ .+|++. + +.++|.=+++=|. ++... ..+.+..+.+.|++.-=.+.......
T Consensus 71 PCq~fS~ag~~~~~~d~r~~L~-~~~~~~-i-~~~~P~~~v~ENV--~g~~~~~~~~~~~~i~~~l~~~GY~~~~~~l~a 145 (275)
T cd00315 71 PCQPFSIAGKRKGFEDTRGTLF-FEIIRI-L-KEKKPKYFLLENV--KGLLTHDNGNTLKVILNTLEELGYNVYWKLLNA 145 (275)
T ss_pred CChhhhHHhhcCCCCCchHHHH-HHHHHH-H-HhcCCCEEEEEcC--cchhccCchHHHHHHHHHHHhCCcEEEEEEEEH
Confidence 62 110 01 111122 456664 4 4568876555454 22121 24567777777776532333333333
Q ss_pred cccC----CceEEEEEecCC
Q 019699 253 PSFA----DTWGWIMASDSP 268 (337)
Q Consensus 253 P~~~----~~~~~~~as~~p 268 (337)
..|+ ..-.|++|++..
T Consensus 146 ~~~GvPQ~R~R~~~ia~~~~ 165 (275)
T cd00315 146 SDYGVPQNRERVFIIGIRKD 165 (275)
T ss_pred HHcCCCCCCcEEEEEEEeCC
Confidence 3332 224578887643
No 244
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=95.99 E-value=0.11 Score=46.08 Aligned_cols=142 Identities=18% Similarity=0.187 Sum_probs=81.7
Q ss_pred CCCeEEEEecchhHHHHHHHhcC-CCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEc----cHHHHH---hh-c
Q 019699 102 NPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVIN----DARAEL---ES-R 172 (337)
Q Consensus 102 ~p~~VLiIG~G~G~~~~~ll~~~-~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~----D~~~~l---~~-~ 172 (337)
+..+||++|+..|+.+.-+.+.. |...|.+|||-+ .+|. +.++++.+ |-..+. +. .
T Consensus 69 p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh--------~~p~-------~Ga~~i~~~dvtdp~~~~ki~e~lp 133 (232)
T KOG4589|consen 69 PEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLH--------IEPP-------EGATIIQGNDVTDPETYRKIFEALP 133 (232)
T ss_pred CCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeee--------ccCC-------CCcccccccccCCHHHHHHHHHhCC
Confidence 45799999999999998777763 778899999832 1222 22333332 332221 11 2
Q ss_pred CCceeEEEEeCCCCCCCCCC--cCCchHH----HHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhhcCcee
Q 019699 173 KESYDVIIGDLADPIEGGPC--YKLYTKS----FYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVV 246 (337)
Q Consensus 173 ~~~yDvIi~D~~dp~~~~p~--~~L~t~e----f~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~vF~~v~ 246 (337)
..+-|+|++|-. |...|.. .+....| .+.- .-..+.|+|.++... |. ...-..+.+.|+++|..|+
T Consensus 134 ~r~VdvVlSDMa-pnaTGvr~~Dh~~~i~LC~s~l~~-al~~~~p~g~fvcK~-----w~-g~e~~~l~r~l~~~f~~Vk 205 (232)
T KOG4589|consen 134 NRPVDVVLSDMA-PNATGVRIRDHYRSIELCDSALLF-ALTLLIPNGSFVCKL-----WD-GSEEALLQRRLQAVFTNVK 205 (232)
T ss_pred CCcccEEEeccC-CCCcCcchhhHHHHHHHHHHHHHH-hhhhcCCCcEEEEEE-----ec-CCchHHHHHHHHHHhhhcE
Confidence 477999999986 2222321 1111111 1111 235688999999764 32 2233466788999999987
Q ss_pred EEEeeccccCC-ceEEEEEecC
Q 019699 247 PYSAHIPSFAD-TWGWIMASDS 267 (337)
Q Consensus 247 ~~~~~vP~~~~-~~~~~~as~~ 267 (337)
.+.- -.+.++ .-.+++|.+.
T Consensus 206 ~vKP-~Asr~eS~E~y~v~~~~ 226 (232)
T KOG4589|consen 206 KVKP-DASRDESAETYLVCLNF 226 (232)
T ss_pred eeCC-ccccccccceeeeeeec
Confidence 6541 112221 2346777653
No 245
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=95.94 E-value=0.086 Score=41.67 Aligned_cols=102 Identities=21% Similarity=0.217 Sum_probs=64.1
Q ss_pred EEEEecchhHHHHHHHhcCCC-cEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHH-HhhcC-CceeEEEEe
Q 019699 106 IFIMGGGEGSTAREILRHKTV-EKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE-LESRK-ESYDVIIGD 182 (337)
Q Consensus 106 VLiIG~G~G~~~~~ll~~~~~-~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~-l~~~~-~~yDvIi~D 182 (337)
++++|+|.|... .+.+.... ..++++|+++.+++.++..... .. ...+.+..+|.... +.-.. ..||++...
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 126 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEG-AG---LGLVDFVVADALGGVLPFEDSASFDLVISL 126 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-cC---CCceEEEEeccccCCCCCCCCCceeEEeee
Confidence 999999999876 33332221 3788899999999885543321 10 11167888887652 33223 479999333
Q ss_pred CCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCC
Q 019699 183 LADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG 220 (337)
Q Consensus 183 ~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~ 220 (337)
..... . . ....+.. +.+.|+|+|.+++...
T Consensus 127 ~~~~~---~--~--~~~~~~~-~~~~l~~~g~~~~~~~ 156 (257)
T COG0500 127 LVLHL---L--P--PAKALRE-LLRVLKPGGRLVLSDL 156 (257)
T ss_pred eehhc---C--C--HHHHHHH-HHHhcCCCcEEEEEec
Confidence 32211 0 1 3567777 7899999998877653
No 246
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=95.92 E-value=0.052 Score=51.50 Aligned_cols=78 Identities=23% Similarity=0.206 Sum_probs=62.3
Q ss_pred CCCeEEEEecchhHHHHHHHhcCC-CcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhh---c-CCce
Q 019699 102 NPKTIFIMGGGEGSTAREILRHKT-VEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES---R-KESY 176 (337)
Q Consensus 102 ~p~~VLiIG~G~G~~~~~ll~~~~-~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~---~-~~~y 176 (337)
+..-.+|.=.|.|+-++++++..+ ..+++++|.||.+++.|++.+... ++|++++.+....+... . -.++
T Consensus 23 ~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~-----~~r~~~v~~~F~~l~~~l~~~~i~~v 97 (314)
T COG0275 23 PDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEF-----DGRVTLVHGNFANLAEALKELGIGKV 97 (314)
T ss_pred CCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhcc-----CCcEEEEeCcHHHHHHHHHhcCCCce
Confidence 346788888999999999998754 557999999999999999987543 47999999876554322 2 3689
Q ss_pred eEEEEeCC
Q 019699 177 DVIIGDLA 184 (337)
Q Consensus 177 DvIi~D~~ 184 (337)
|-|+.|+-
T Consensus 98 DGiL~DLG 105 (314)
T COG0275 98 DGILLDLG 105 (314)
T ss_pred eEEEEecc
Confidence 99999985
No 247
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=95.92 E-value=0.031 Score=52.52 Aligned_cols=43 Identities=28% Similarity=0.325 Sum_probs=34.6
Q ss_pred CCCeEEEEecchh----HHHHHHHhcCC-----CcEEEEEECChHHHHHHHh
Q 019699 102 NPKTIFIMGGGEG----STAREILRHKT-----VEKVVMCDIDEEVVEFCKS 144 (337)
Q Consensus 102 ~p~~VLiIG~G~G----~~~~~ll~~~~-----~~~v~~VEid~~vi~~a~~ 144 (337)
.+-+|.-.||++| +++..+.++.+ ..+|++.|||..+++.|+.
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~ 147 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARA 147 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhc
Confidence 4789999999999 45555555542 4689999999999999986
No 248
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=95.90 E-value=0.0071 Score=55.55 Aligned_cols=82 Identities=21% Similarity=0.152 Sum_probs=48.1
Q ss_pred CeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCC-----CCCeEEEEccHHHHHhhcCCceeE
Q 019699 104 KTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFS-----DPRLELVINDARAELESRKESYDV 178 (337)
Q Consensus 104 ~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~-----d~rv~v~~~D~~~~l~~~~~~yDv 178 (337)
.+|||.=+|-|.=+.-++.. .++|+++|-+|-+..+.+.=+.......+ -.|++++.+|..+||+...+.||+
T Consensus 77 ~~VLDaTaGLG~Da~vlA~~--G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~~~~s~DV 154 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLASL--GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQPDNSFDV 154 (234)
T ss_dssp --EEETT-TTSHHHHHHHHH--T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCCHSS--SE
T ss_pred CEEEECCCcchHHHHHHHcc--CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhhcCCCCCE
Confidence 48999777777666555543 36899999999988887764432111001 138999999999999866789999
Q ss_pred EEEeCCCCC
Q 019699 179 IIGDLADPI 187 (337)
Q Consensus 179 Ii~D~~dp~ 187 (337)
|..|+-.|.
T Consensus 155 VY~DPMFp~ 163 (234)
T PF04445_consen 155 VYFDPMFPE 163 (234)
T ss_dssp EEE--S---
T ss_pred EEECCCCCC
Confidence 999986543
No 249
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=95.79 E-value=0.029 Score=53.72 Aligned_cols=79 Identities=22% Similarity=0.171 Sum_probs=56.7
Q ss_pred CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHH---Hhhc--CCc
Q 019699 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE---LESR--KES 175 (337)
Q Consensus 101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~---l~~~--~~~ 175 (337)
.+....+|.=.|.|+-+.++++..+..++.++|.||++++.|++.+... ++|++++.++..++ +... ..+
T Consensus 19 ~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~-----~~r~~~~~~~F~~l~~~l~~~~~~~~ 93 (310)
T PF01795_consen 19 KPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKF-----DDRFIFIHGNFSNLDEYLKELNGINK 93 (310)
T ss_dssp -TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCC-----CTTEEEEES-GGGHHHHHHHTTTTS-
T ss_pred CCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhc-----cceEEEEeccHHHHHHHHHHccCCCc
Confidence 3456788888899999999998766699999999999999999876532 57999999876543 4443 258
Q ss_pred eeEEEEeCC
Q 019699 176 YDVIIGDLA 184 (337)
Q Consensus 176 yDvIi~D~~ 184 (337)
+|.|+.|+-
T Consensus 94 ~dgiL~DLG 102 (310)
T PF01795_consen 94 VDGILFDLG 102 (310)
T ss_dssp EEEEEEE-S
T ss_pred cCEEEEccc
Confidence 999999984
No 250
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=95.73 E-value=0.052 Score=49.62 Aligned_cols=108 Identities=16% Similarity=0.172 Sum_probs=67.3
Q ss_pred hhhHHHHHHhHHHhcCCCCCeEEEEecchhHHHH--HHHhcCCCcEEEEE--ECChHHHHHHHhhhhhccCCCCCCCeEE
Q 019699 85 EFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAR--EILRHKTVEKVVMC--DIDEEVVEFCKSYLVVNKEAFSDPRLEL 160 (337)
Q Consensus 85 e~~Y~e~l~~~~l~~~~~p~~VLiIG~G~G~~~~--~ll~~~~~~~v~~V--Eid~~vi~~a~~~f~~~~~~~~d~rv~v 160 (337)
+.+|.+-+-+.|+....+.++||+||||.-+.-+ .+++. ..+|++| |+++++.++++ .+++++
T Consensus 7 ~~~~~~~~~~~pi~l~~~~~~VLVVGGG~VA~RK~~~Ll~~--gA~VtVVap~i~~el~~l~~-----------~~~i~~ 73 (223)
T PRK05562 7 EDIYNEENKYMFISLLSNKIKVLIIGGGKAAFIKGKTFLKK--GCYVYILSKKFSKEFLDLKK-----------YGNLKL 73 (223)
T ss_pred hHHhhccCCEeeeEEECCCCEEEEECCCHHHHHHHHHHHhC--CCEEEEEcCCCCHHHHHHHh-----------CCCEEE
Confidence 3466666666777777788999999999877643 34443 3667776 88888877654 246777
Q ss_pred EEccHHHHHhhcCCceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCC
Q 019699 161 VINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGP 221 (337)
Q Consensus 161 ~~~D~~~~l~~~~~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~ 221 (337)
+..+... ..-..+++||....|+. .-+. +.+..+..|+++.+...
T Consensus 74 ~~r~~~~---~dl~g~~LViaATdD~~------------vN~~-I~~~a~~~~~lvn~vd~ 118 (223)
T PRK05562 74 IKGNYDK---EFIKDKHLIVIATDDEK------------LNNK-IRKHCDRLYKLYIDCSD 118 (223)
T ss_pred EeCCCCh---HHhCCCcEEEECCCCHH------------HHHH-HHHHHHHcCCeEEEcCC
Confidence 7644321 11145888887765432 1222 34444455777766543
No 251
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=95.70 E-value=0.027 Score=50.78 Aligned_cols=104 Identities=16% Similarity=0.142 Sum_probs=53.0
Q ss_pred CCCCeEEEEecchhHHHHHHHh---cC-CCcEEEEEECChHHH-HHHHhhhhhccCCCCCCCeEEEEccHHH--HHhh--
Q 019699 101 PNPKTIFIMGGGEGSTAREILR---HK-TVEKVVMCDIDEEVV-EFCKSYLVVNKEAFSDPRLELVINDARA--ELES-- 171 (337)
Q Consensus 101 ~~p~~VLiIG~G~G~~~~~ll~---~~-~~~~v~~VEid~~vi-~~a~~~f~~~~~~~~d~rv~v~~~D~~~--~l~~-- 171 (337)
-+|+.|+++|.-.|+.+...+. .. +..+|.+||||-.-. ..+.+..|. .+|++++.||..+ .+.+
T Consensus 31 ~kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~------~~rI~~i~Gds~d~~~~~~v~ 104 (206)
T PF04989_consen 31 LKPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPM------SPRITFIQGDSIDPEIVDQVR 104 (206)
T ss_dssp H--SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----------TTEEEEES-SSSTHHHHTSG
T ss_pred hCCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccc------cCceEEEECCCCCHHHHHHHH
Confidence 4789999999999888765543 22 567999999975432 222222222 3899999999852 2222
Q ss_pred -c--CCceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699 172 -R--KESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (337)
Q Consensus 172 -~--~~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~ 218 (337)
. .....+||.|+.... .+.. .-++. +...+++|+.+++.
T Consensus 105 ~~~~~~~~vlVilDs~H~~-----~hvl--~eL~~-y~plv~~G~Y~IVe 146 (206)
T PF04989_consen 105 ELASPPHPVLVILDSSHTH-----EHVL--AELEA-YAPLVSPGSYLIVE 146 (206)
T ss_dssp SS----SSEEEEESS---------SSHH--HHHHH-HHHT--TT-EEEET
T ss_pred HhhccCCceEEEECCCccH-----HHHH--HHHHH-hCccCCCCCEEEEE
Confidence 1 245669999987422 1221 22333 46789999999875
No 252
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=95.70 E-value=0.04 Score=55.52 Aligned_cols=129 Identities=19% Similarity=0.204 Sum_probs=68.6
Q ss_pred EEcCccccccCChhhHHHHHHhH-HH-hcCCCCCeEEEEecchhHHHHHHHhcCCCcEEE--EEECChHHHHHHHhh-hh
Q 019699 73 VIDGKLQSAEVDEFIYHESLVHP-AL-LHHPNPKTIFIMGGGEGSTAREILRHKTVEKVV--MCDIDEEVVEFCKSY-LV 147 (337)
Q Consensus 73 ~lDG~~q~~~~de~~Y~e~l~~~-~l-~~~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~--~VEid~~vi~~a~~~-f~ 147 (337)
+-.|..|+... ...|.+.|..+ ++ .....-+.+|++|||.|+++..++.+. +..+. .-|..+..++.|-+. ++
T Consensus 87 FPgggt~F~~G-a~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~-V~t~s~a~~d~~~~qvqfaleRGvp 164 (506)
T PF03141_consen 87 FPGGGTMFPHG-ADHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERN-VTTMSFAPNDEHEAQVQFALERGVP 164 (506)
T ss_pred eCCCCccccCC-HHHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCC-ceEEEcccccCCchhhhhhhhcCcc
Confidence 33444554432 23566555432 33 133456889999999999999999863 33322 223444455555432 22
Q ss_pred hccCCCCCCCeEEEEccHHHHHhhcCCceeEEEEeCC-CCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCCC
Q 019699 148 VNKEAFSDPRLELVINDARAELESRKESYDVIIGDLA-DPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPA 222 (337)
Q Consensus 148 ~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~D~~-dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p 222 (337)
..-+.+ +.+-|.-..+.||+|=+.-. .+|. +-..+ ++-+ +.|+|+|||.++.. ++|
T Consensus 165 a~~~~~-----------~s~rLPfp~~~fDmvHcsrc~i~W~--~~~g~----~l~e-vdRvLRpGGyfv~S-~pp 221 (506)
T PF03141_consen 165 AMIGVL-----------GSQRLPFPSNAFDMVHCSRCLIPWH--PNDGF----LLFE-VDRVLRPGGYFVLS-GPP 221 (506)
T ss_pred hhhhhh-----------ccccccCCccchhhhhcccccccch--hcccc----eeeh-hhhhhccCceEEec-CCc
Confidence 110011 01112223578999866544 4552 11122 2223 58999999998754 444
No 253
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=95.63 E-value=0.063 Score=48.71 Aligned_cols=105 Identities=17% Similarity=0.148 Sum_probs=83.3
Q ss_pred CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (337)
Q Consensus 101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi 180 (337)
+...++.|||+--+.++.++.+..+...++++|+++.-++.|++++..+. ..+++++..+||..-++. ....|+|+
T Consensus 15 ~~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~---l~~~i~vr~~dgl~~l~~-~d~~d~iv 90 (226)
T COG2384 15 KQGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNN---LSERIDVRLGDGLAVLEL-EDEIDVIV 90 (226)
T ss_pred HcCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcC---CcceEEEeccCCccccCc-cCCcCEEE
Confidence 44556999999999999999998888999999999999999999998653 358999999999877754 35799999
Q ss_pred EeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (337)
Q Consensus 181 ~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~ 218 (337)
+-. ....+ -.++++. -++.|+.-=.++.|
T Consensus 91 IAG-------MGG~l-I~~ILee-~~~~l~~~~rlILQ 119 (226)
T COG2384 91 IAG-------MGGTL-IREILEE-GKEKLKGVERLILQ 119 (226)
T ss_pred EeC-------CcHHH-HHHHHHH-hhhhhcCcceEEEC
Confidence 873 32223 3577777 67788754467776
No 254
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=95.57 E-value=0.11 Score=51.23 Aligned_cols=139 Identities=14% Similarity=0.034 Sum_probs=93.5
Q ss_pred CCCeEEEEecchhHHHHHHHhc-CCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhh-cCCceeEE
Q 019699 102 NPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDVI 179 (337)
Q Consensus 102 ~p~~VLiIG~G~G~~~~~ll~~-~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~-~~~~yDvI 179 (337)
+..|||++++.-|+=+.+++.. .....|.+-|.+..=+...+.++...+ -.+..+.+.|+++|-.+ ...+||-|
T Consensus 241 ~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlG----v~ntiv~n~D~~ef~~~~~~~~fDRV 316 (460)
T KOG1122|consen 241 PGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLG----VTNTIVSNYDGREFPEKEFPGSFDRV 316 (460)
T ss_pred CCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhC----CCceEEEccCcccccccccCccccee
Confidence 4579999999888655555443 234579999999999988888876442 35678889999987433 34589999
Q ss_pred EEeCC-CCC--CCCCC-c------------CCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhhcC
Q 019699 180 IGDLA-DPI--EGGPC-Y------------KLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFK 243 (337)
Q Consensus 180 i~D~~-dp~--~~~p~-~------------~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~vF~ 243 (337)
++|++ +.. ..-+. . .-+.++.+.. +-+.+++||++|-.+.+. ..+.-..+++..-+-||
T Consensus 317 LLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~Llls-Ai~lv~~GGvLVYSTCSI----~~~ENE~vV~yaL~K~p 391 (460)
T KOG1122|consen 317 LLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLS-AIDLVKAGGVLVYSTCSI----TVEENEAVVDYALKKRP 391 (460)
T ss_pred eecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHH-HHhhccCCcEEEEEeeec----chhhhHHHHHHHHHhCC
Confidence 99997 321 00010 0 0122445555 468999999998765432 34455677777777889
Q ss_pred ceeEEE
Q 019699 244 YVVPYS 249 (337)
Q Consensus 244 ~v~~~~ 249 (337)
++..-.
T Consensus 392 ~~kL~p 397 (460)
T KOG1122|consen 392 EVKLVP 397 (460)
T ss_pred ceEecc
Confidence 887643
No 255
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=95.53 E-value=0.13 Score=50.11 Aligned_cols=98 Identities=23% Similarity=0.298 Sum_probs=65.5
Q ss_pred CCeEEEEecch-hHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHH-hhcC-CceeEE
Q 019699 103 PKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAEL-ESRK-ESYDVI 179 (337)
Q Consensus 103 p~~VLiIG~G~-G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l-~~~~-~~yDvI 179 (337)
..+|+++|+|. |.++..+++..+..+|+++|++++=+++|++++..... .++.-+ |...-+ ..+. ..+|++
T Consensus 169 ~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~--~~~~~~----~~~~~~~~~t~g~g~D~v 242 (350)
T COG1063 169 GGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVV--VNPSED----DAGAEILELTGGRGADVV 242 (350)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEe--ecCccc----cHHHHHHHHhCCCCCCEE
Confidence 34899999996 44557777778889999999999999999997653210 111111 333333 3333 369999
Q ss_pred EEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (337)
Q Consensus 180 i~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~ 219 (337)
|--+-. ...++. +-+.++++|.+++-.
T Consensus 243 ie~~G~------------~~~~~~-ai~~~r~gG~v~~vG 269 (350)
T COG1063 243 IEAVGS------------PPALDQ-ALEALRPGGTVVVVG 269 (350)
T ss_pred EECCCC------------HHHHHH-HHHHhcCCCEEEEEe
Confidence 855421 234455 568999999988664
No 256
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=95.52 E-value=0.11 Score=52.94 Aligned_cols=111 Identities=15% Similarity=0.180 Sum_probs=73.2
Q ss_pred CCCeEEEEecchhHHHHHHHhcCC----CcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHH----hhcC
Q 019699 102 NPKTIFIMGGGEGSTAREILRHKT----VEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAEL----ESRK 173 (337)
Q Consensus 102 ~p~~VLiIG~G~G~~~~~ll~~~~----~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l----~~~~ 173 (337)
...+|++-.||+|++.....++.. ...+.+.|+++....+|+.++-.+... . .+.+..+|-..-. ....
T Consensus 186 ~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~--~-~~~i~~~dtl~~~~~~~~~~~ 262 (489)
T COG0286 186 PRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIE--G-DANIRHGDTLSNPKHDDKDDK 262 (489)
T ss_pred CCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCC--c-cccccccccccCCcccccCCc
Confidence 446899999999998776665431 256899999999999999998765421 1 3455556543321 1134
Q ss_pred CceeEEEEeCCCC---CCC--------------C-CCcCCch-HHHHHHHhccccCCCceEE
Q 019699 174 ESYDVIIGDLADP---IEG--------------G-PCYKLYT-KSFYEFVVKPRLNPEGIFV 216 (337)
Q Consensus 174 ~~yDvIi~D~~dp---~~~--------------~-p~~~L~t-~ef~~~~~~~~L~p~Gvlv 216 (337)
++||.|+.+++.. |.. + +...--. .-|+++ +...|+|+|...
T Consensus 263 ~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h-~~~~l~~~g~aa 323 (489)
T COG0286 263 GKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQH-ILYKLKPGGRAA 323 (489)
T ss_pred cceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHH-HHHhcCCCceEE
Confidence 7799999999843 110 1 1111112 468888 789999988433
No 257
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=95.50 E-value=0.026 Score=53.76 Aligned_cols=80 Identities=16% Similarity=0.111 Sum_probs=47.0
Q ss_pred CCeEEEEecchhHH-HHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccH----HHHHhhcCCcee
Q 019699 103 PKTIFIMGGGEGST-AREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDA----RAELESRKESYD 177 (337)
Q Consensus 103 p~~VLiIG~G~G~~-~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~----~~~l~~~~~~yD 177 (337)
.-++||||+|.-++ +.-..+.+ .=++++.|||+..++.|++....+.. -..+++++...- ..-+....++||
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~-~W~fvaTdID~~sl~~A~~nv~~N~~--L~~~I~l~~~~~~~~i~~~i~~~~e~~d 179 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLY-GWSFVATDIDPKSLESARENVERNPN--LESRIELRKQKNPDNIFDGIIQPNERFD 179 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHHT-T---TTTEEEEE--ST-SSTTTSTT--S-EE
T ss_pred ceEeecCCccHHHHHHHHhhhhc-CCeEEEecCCHHHHHHHHHHHHhccc--cccceEEEEcCCccccchhhhcccceee
Confidence 46899999998765 33333444 46899999999999999999876521 257888876532 222333357899
Q ss_pred EEEEeCCC
Q 019699 178 VIIGDLAD 185 (337)
Q Consensus 178 vIi~D~~d 185 (337)
+.+++++.
T Consensus 180 ftmCNPPF 187 (299)
T PF05971_consen 180 FTMCNPPF 187 (299)
T ss_dssp EEEE----
T ss_pred EEecCCcc
Confidence 99999873
No 258
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=95.48 E-value=0.1 Score=53.40 Aligned_cols=109 Identities=19% Similarity=0.203 Sum_probs=63.4
Q ss_pred CCCeEEEEecchhH-HHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhcc--CCCCCCC-----eEEEEccHH----HHH
Q 019699 102 NPKTIFIMGGGEGS-TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNK--EAFSDPR-----LELVINDAR----AEL 169 (337)
Q Consensus 102 ~p~~VLiIG~G~G~-~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~--~~~~d~r-----v~v~~~D~~----~~l 169 (337)
.+.+|+++|+|.-+ .+...++..+. +|+++|.+++..+.+++.-.... +..++.. .+....|.. +.+
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~lGA-~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~~ 242 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSLGA-IVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMALF 242 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHHHHH
Confidence 58999999999655 45566666654 79999999999999998421100 0000000 011111211 111
Q ss_pred hhcCCceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699 170 ESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (337)
Q Consensus 170 ~~~~~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~ 218 (337)
.+..+.+|+||.-...|. .++..+++++. -+.++|||+++.-
T Consensus 243 ~~~~~gaDVVIetag~pg--~~aP~lit~~~-----v~~mkpGgvIVdv 284 (509)
T PRK09424 243 AEQAKEVDIIITTALIPG--KPAPKLITAEM-----VASMKPGSVIVDL 284 (509)
T ss_pred HhccCCCCEEEECCCCCc--ccCcchHHHHH-----HHhcCCCCEEEEE
Confidence 221246999998776554 22234545443 4568899988754
No 259
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=95.45 E-value=0.0049 Score=55.53 Aligned_cols=106 Identities=22% Similarity=0.265 Sum_probs=56.7
Q ss_pred CCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEE
Q 019699 100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (337)
Q Consensus 100 ~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvI 179 (337)
.|....|.|+|||++.++..+-. ..+|...|+-+ .+++ ++..|... +.-.++..|++
T Consensus 70 ~~~~~viaD~GCGdA~la~~~~~---~~~V~SfDLva-----------------~n~~--Vtacdia~-vPL~~~svDv~ 126 (219)
T PF05148_consen 70 RPKSLVIADFGCGDAKLAKAVPN---KHKVHSFDLVA-----------------PNPR--VTACDIAN-VPLEDESVDVA 126 (219)
T ss_dssp S-TTS-EEEES-TT-HHHHH--S------EEEEESS------------------SSTT--EEES-TTS--S--TT-EEEE
T ss_pred cCCCEEEEECCCchHHHHHhccc---CceEEEeeccC-----------------CCCC--EEEecCcc-CcCCCCceeEE
Confidence 45567899999999999977542 23577766632 1343 55566532 33345889999
Q ss_pred EEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe-CCCCCcCCChhHHHHHHHHHhhh
Q 019699 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ-AGPAGIFSHTEVFSCIYNTLRQV 241 (337)
Q Consensus 180 i~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~-~~~p~~~~~~~~~~~i~~~l~~v 241 (337)
|..++-- ... -.+|+++ +.|+|++||.|.+- ..|- +. ......+.+++.
T Consensus 127 VfcLSLM-----GTn--~~~fi~E-A~RvLK~~G~L~IAEV~SR--f~---~~~~F~~~~~~~ 176 (219)
T PF05148_consen 127 VFCLSLM-----GTN--WPDFIRE-ANRVLKPGGILKIAEVKSR--FE---NVKQFIKALKKL 176 (219)
T ss_dssp EEES--------SS---HHHHHHH-HHHHEEEEEEEEEEEEGGG---S----HHHHHHHHHCT
T ss_pred EEEhhhh-----CCC--cHHHHHH-HHheeccCcEEEEEEeccc--Cc---CHHHHHHHHHHC
Confidence 9988621 111 1478998 89999999988764 2221 22 234455566655
No 260
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.35 E-value=0.074 Score=48.84 Aligned_cols=98 Identities=19% Similarity=0.199 Sum_probs=65.8
Q ss_pred CCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhh--cCCcee
Q 019699 100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES--RKESYD 177 (337)
Q Consensus 100 ~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~--~~~~yD 177 (337)
..+.+.+|+||..+|+++--+++. +..+|.+||.--.-+..-- -.|||+.++..-=..++.. ..+.-|
T Consensus 77 ~~k~kv~LDiGsSTGGFTd~lLq~-gAk~VyavDVG~~Ql~~kL---------R~d~rV~~~E~tN~r~l~~~~~~~~~d 146 (245)
T COG1189 77 DVKGKVVLDIGSSTGGFTDVLLQR-GAKHVYAVDVGYGQLHWKL---------RNDPRVIVLERTNVRYLTPEDFTEKPD 146 (245)
T ss_pred CCCCCEEEEecCCCccHHHHHHHc-CCcEEEEEEccCCccCHhH---------hcCCcEEEEecCChhhCCHHHcccCCC
Confidence 467899999999999999998885 6899999998654333221 1478988776544445433 235789
Q ss_pred EEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEE
Q 019699 178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT 217 (337)
Q Consensus 178 vIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~ 217 (337)
+|++|.+.-. | ...+-. +...|+|+|-++.
T Consensus 147 ~~v~DvSFIS-------L--~~iLp~-l~~l~~~~~~~v~ 176 (245)
T COG1189 147 LIVIDVSFIS-------L--KLILPA-LLLLLKDGGDLVL 176 (245)
T ss_pred eEEEEeehhh-------H--HHHHHH-HHHhcCCCceEEE
Confidence 9999986311 1 122333 4566777775554
No 261
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=95.33 E-value=0.026 Score=56.92 Aligned_cols=80 Identities=23% Similarity=0.264 Sum_probs=61.8
Q ss_pred CCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcC----Cc
Q 019699 100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRK----ES 175 (337)
Q Consensus 100 ~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~----~~ 175 (337)
.+..+-+||+.||+|.++..++++ +.+|.+||++|..++-|+++-..+. -.+.++|.+-+.+-+.... ..
T Consensus 381 l~~~k~llDv~CGTG~iglala~~--~~~ViGvEi~~~aV~dA~~nA~~Ng----isNa~Fi~gqaE~~~~sl~~~~~~~ 454 (534)
T KOG2187|consen 381 LPADKTLLDVCCGTGTIGLALARG--VKRVIGVEISPDAVEDAEKNAQING----ISNATFIVGQAEDLFPSLLTPCCDS 454 (534)
T ss_pred CCCCcEEEEEeecCCceehhhhcc--ccceeeeecChhhcchhhhcchhcC----ccceeeeecchhhccchhcccCCCC
Confidence 356688999999999999998875 6899999999999999999866542 3578999996666544321 23
Q ss_pred ee-EEEEeCCC
Q 019699 176 YD-VIIGDLAD 185 (337)
Q Consensus 176 yD-vIi~D~~d 185 (337)
=+ +.|+|++-
T Consensus 455 ~~~v~iiDPpR 465 (534)
T KOG2187|consen 455 ETLVAIIDPPR 465 (534)
T ss_pred CceEEEECCCc
Confidence 34 77888763
No 262
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=95.26 E-value=0.05 Score=45.84 Aligned_cols=46 Identities=22% Similarity=0.268 Sum_probs=40.5
Q ss_pred CCCCeEEEEecchhHHHHHHHh-----cCCCcEEEEEECChHHHHHHHhhhh
Q 019699 101 PNPKTIFIMGGGEGSTAREILR-----HKTVEKVVMCDIDEEVVEFCKSYLV 147 (337)
Q Consensus 101 ~~p~~VLiIG~G~G~~~~~ll~-----~~~~~~v~~VEid~~vi~~a~~~f~ 147 (337)
.++..|+|+|+|-|.+++.++. . +..+|++||.++..++.+++...
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~-~~~~v~~iD~~~~~~~~a~~~~~ 74 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSS-PNLRVLGIDCNESLVESAQKRAQ 74 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcC-CCCeEEEEECCcHHHHHHHHHHH
Confidence 5678999999999999999888 5 46799999999999999988754
No 263
>PF14314 Methyltrans_Mon: Virus-capping methyltransferase
Probab=95.25 E-value=0.063 Score=56.24 Aligned_cols=160 Identities=14% Similarity=0.130 Sum_probs=93.4
Q ss_pred CCCCeEEEEecchhHHHHHHHhcCCCcEEE---EEECChHHHHHHHhhhhhccCCCCCCCeEEEEccH------------
Q 019699 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVV---MCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDA------------ 165 (337)
Q Consensus 101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~---~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~------------ 165 (337)
..++.+|..|=|+|++++.+++.++..++. ..|++.....-+.-.-|..-....+.+-+++..|-
T Consensus 321 i~~~d~l~~GDGSGGita~lLR~~p~sr~iFNSLL~~~~~~l~Gs~P~PPsAi~~~g~~~~Rcvn~~~~W~~pSDLs~~~ 400 (675)
T PF14314_consen 321 IKYRDALCGGDGSGGITACLLRMNPTSRGIFNSLLELDGSDLRGSHPSPPSAIMALGNDKSRCVNLDTCWEHPSDLSDPE 400 (675)
T ss_pred CCcceeEEEecCchHHHHHHHHhCcccceeeeccccccCCCCCCCCCCCcHHHhccCcccceeecchhhhcCccccCCcc
Confidence 456889999999999999999998888876 56776666555443332211112233444444332
Q ss_pred -HHHHh----hcCCceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhh
Q 019699 166 -RAELE----SRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQ 240 (337)
Q Consensus 166 -~~~l~----~~~~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~ 240 (337)
-+|.. +..-++|+|++|.-.... .. ....+.-.-+. +.+.|.++|.+++-+.-.. .... -..++..+..
T Consensus 401 TW~YF~~l~~~~~~~idLiv~DmEV~d~-~~-~~kIe~~l~~~-~~~ll~~~gtLIfKTYlt~-l~~~--~~~il~~lg~ 474 (675)
T PF14314_consen 401 TWKYFVSLKKQHNLSIDLIVMDMEVRDD-SI-IRKIEDNLRDY-VHSLLEEPGTLIFKTYLTR-LLSP--DYNILDLLGR 474 (675)
T ss_pred HHHHHHHHHhhcCCcccEEEEeceecCh-HH-HHHHHHHHHHH-HHHhcCCCcEEEEehhHhh-hhcc--hhhHHHHHHh
Confidence 12222 235679999999852211 10 01111111122 4567899999998762111 1111 2357788999
Q ss_pred hcCceeEEEeeccccCCceEEEEEec
Q 019699 241 VFKYVVPYSAHIPSFADTWGWIMASD 266 (337)
Q Consensus 241 vF~~v~~~~~~vP~~~~~~~~~~as~ 266 (337)
.|+.|..+.+..-+.-..=.++++++
T Consensus 475 ~F~~V~l~qT~~SSs~TSEVYlv~~~ 500 (675)
T PF14314_consen 475 YFKSVELVQTQFSSSFTSEVYLVFQK 500 (675)
T ss_pred hcCceEEEECCCCCCCceEEEEEEec
Confidence 99999988765443322224677765
No 264
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=95.23 E-value=0.14 Score=48.03 Aligned_cols=106 Identities=19% Similarity=0.301 Sum_probs=60.3
Q ss_pred CCCeEEEEecchh--HHHHHHHhc-CCCcEEEEEECChHHHHHHHhhhhhccCCCCCCC--eEEEEccHHH---HHhh--
Q 019699 102 NPKTIFIMGGGEG--STAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPR--LELVINDARA---ELES-- 171 (337)
Q Consensus 102 ~p~~VLiIG~G~G--~~~~~ll~~-~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~r--v~v~~~D~~~---~l~~-- 171 (337)
.-+..|+||+|-= ....++++. .+..+|+.||.||.++.-++..+.. +++ ..++.+|.++ .|..
T Consensus 68 GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~------~~~g~t~~v~aD~r~p~~iL~~p~ 141 (267)
T PF04672_consen 68 GIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLAD------NPRGRTAYVQADLRDPEAILAHPE 141 (267)
T ss_dssp ---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-------TTSEEEEEE--TT-HHHHHCSHH
T ss_pred CcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcC------CCCccEEEEeCCCCCHHHHhcCHH
Confidence 5689999999943 345666542 5679999999999999999987754 344 8999999874 2331
Q ss_pred c------CCceeEEEEeCCC--CCCCCCCcCCchHHHHHHHhccccCCCceEEEeCC
Q 019699 172 R------KESYDVIIGDLAD--PIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG 220 (337)
Q Consensus 172 ~------~~~yDvIi~D~~d--p~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~ 220 (337)
. ++..=++++.... +....| ....+. +.+.|.||..|++...
T Consensus 142 ~~~~lD~~rPVavll~~vLh~v~D~~dp------~~iv~~-l~d~lapGS~L~ish~ 191 (267)
T PF04672_consen 142 VRGLLDFDRPVAVLLVAVLHFVPDDDDP------AGIVAR-LRDALAPGSYLAISHA 191 (267)
T ss_dssp HHCC--TTS--EEEECT-GGGS-CGCTH------HHHHHH-HHCCS-TT-EEEEEEE
T ss_pred HHhcCCCCCCeeeeeeeeeccCCCccCH------HHHHHH-HHHhCCCCceEEEEec
Confidence 1 2333355554432 111122 467777 7899999999987653
No 265
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=95.18 E-value=0.066 Score=49.81 Aligned_cols=117 Identities=22% Similarity=0.255 Sum_probs=71.7
Q ss_pred ceEEEEcCccccccCCh------------hhHHHHHHhHHH--------------hcCCCCCeEEEEecchhHHHHHHHh
Q 019699 69 GKALVIDGKLQSAEVDE------------FIYHESLVHPAL--------------LHHPNPKTIFIMGGGEGSTAREILR 122 (337)
Q Consensus 69 G~~L~lDG~~q~~~~de------------~~Y~e~l~~~~l--------------~~~~~p~~VLiIG~G~G~~~~~ll~ 122 (337)
||.=+||..+.+++.++ ..||+-...-.. -..+...-|.++|||.+-++. .
T Consensus 121 grFR~lNEqLYt~~s~~A~~lfkedp~afdlYH~gfr~QV~kWP~nPld~ii~~ik~r~~~~vIaD~GCGEakiA~---~ 197 (325)
T KOG3045|consen 121 GRFRYLNEQLYTGTSSEAFDLFKEDPTAFDLYHAGFRSQVKKWPENPLDVIIRKIKRRPKNIVIADFGCGEAKIAS---S 197 (325)
T ss_pred cceehhhhhhccCCcHHHHHHHhcCcHHHHHHHHHHHHHHHhCCCChHHHHHHHHHhCcCceEEEecccchhhhhh---c
Confidence 56667787776655422 257764422111 012344568889999998886 1
Q ss_pred cCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEEEeCCCCCCCCCCcCCchHHHHH
Q 019699 123 HKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYE 202 (337)
Q Consensus 123 ~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~D~~dp~~~~p~~~L~t~ef~~ 202 (337)
. -..|...|+-+ .+-+++..|.++ +.-.+++.|+++..++- +...+ .+|+.
T Consensus 198 ~--~~kV~SfDL~a-------------------~~~~V~~cDm~~-vPl~d~svDvaV~CLSL-----Mgtn~--~df~k 248 (325)
T KOG3045|consen 198 E--RHKVHSFDLVA-------------------VNERVIACDMRN-VPLEDESVDVAVFCLSL-----MGTNL--ADFIK 248 (325)
T ss_pred c--ccceeeeeeec-------------------CCCceeeccccC-CcCccCcccEEEeeHhh-----hcccH--HHHHH
Confidence 1 13455555421 233456667665 44456889999988762 11233 48999
Q ss_pred HHhccccCCCceEEEe
Q 019699 203 FVVKPRLNPEGIFVTQ 218 (337)
Q Consensus 203 ~~~~~~L~p~Gvlv~~ 218 (337)
. +.|+|++||.+-+-
T Consensus 249 E-a~RiLk~gG~l~IA 263 (325)
T KOG3045|consen 249 E-ANRILKPGGLLYIA 263 (325)
T ss_pred H-HHHHhccCceEEEE
Confidence 9 89999999987653
No 266
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=95.09 E-value=0.063 Score=49.73 Aligned_cols=76 Identities=22% Similarity=0.320 Sum_probs=53.6
Q ss_pred CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (337)
Q Consensus 101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi 180 (337)
+.|.+|++||||.--++.-.....+...+.+.|||..++++...++... .++.++.+.|...- ......|+.+
T Consensus 104 ~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l-----~~~~~~~v~Dl~~~--~~~~~~DlaL 176 (251)
T PF07091_consen 104 PPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVL-----GVPHDARVRDLLSD--PPKEPADLAL 176 (251)
T ss_dssp ---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHT-----T-CEEEEEE-TTTS--HTTSEESEEE
T ss_pred CCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhh-----CCCcceeEeeeecc--CCCCCcchhh
Confidence 5689999999999888776666666679999999999999999998764 36778888875332 1346688887
Q ss_pred EeC
Q 019699 181 GDL 183 (337)
Q Consensus 181 ~D~ 183 (337)
+==
T Consensus 177 llK 179 (251)
T PF07091_consen 177 LLK 179 (251)
T ss_dssp EET
T ss_pred HHH
Confidence 653
No 267
>PRK11524 putative methyltransferase; Provisional
Probab=94.98 E-value=0.063 Score=50.71 Aligned_cols=66 Identities=20% Similarity=0.213 Sum_probs=45.6
Q ss_pred CCCCeEEEEccHHHHHhhc-CCceeEEEEeCCCCCC---CCCCcC-------CchHHHHHHHhccccCCCceEEEeCC
Q 019699 154 SDPRLELVINDARAELESR-KESYDVIIGDLADPIE---GGPCYK-------LYTKSFYEFVVKPRLNPEGIFVTQAG 220 (337)
Q Consensus 154 ~d~rv~v~~~D~~~~l~~~-~~~yDvIi~D~~dp~~---~~p~~~-------L~t~ef~~~~~~~~L~p~Gvlv~~~~ 220 (337)
.....+++.+|+.++++.. ++++|+|++|++-... ...... -+..+++.. +.++|+|+|.+++...
T Consensus 5 ~~~~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~rvLK~~G~i~i~~~ 81 (284)
T PRK11524 5 GNEAKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDE-CHRVLKKQGTMYIMNS 81 (284)
T ss_pred cCCCCEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHH-HHHHhCCCcEEEEEcC
Confidence 3456689999999998764 4789999999874220 001000 012467787 7999999999988753
No 268
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=94.79 E-value=0.16 Score=46.91 Aligned_cols=122 Identities=20% Similarity=0.245 Sum_probs=78.7
Q ss_pred CCCCeEEEEecchhHHHHHHHhc-CCCcEEEEEECChH----HHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhh--cC
Q 019699 101 PNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEE----VVEFCKSYLVVNKEAFSDPRLELVINDARAELES--RK 173 (337)
Q Consensus 101 ~~p~~VLiIG~G~G~~~~~ll~~-~~~~~v~~VEid~~----vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~--~~ 173 (337)
+...+||-||++.|++...+..- .+..-|.+||.++. .+.+|++ .+++--+++|++.--+- .-
T Consensus 155 kpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkk----------RtNiiPIiEDArhP~KYRmlV 224 (317)
T KOG1596|consen 155 KPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKK----------RTNIIPIIEDARHPAKYRMLV 224 (317)
T ss_pred cCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhc----------cCCceeeeccCCCchheeeee
Confidence 45689999999999999888775 34557889999874 4555554 46777789998642211 12
Q ss_pred CceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCCCCc---CCChhHHHHHHHHHhhh
Q 019699 174 ESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGI---FSHTEVFSCIYNTLRQV 241 (337)
Q Consensus 174 ~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~---~~~~~~~~~i~~~l~~v 241 (337)
.-.|+||.|.+.|..... ..| + +.--|+++|-+++..-.++. ......|+.-.+.|++-
T Consensus 225 gmVDvIFaDvaqpdq~Ri-vaL-------N-A~~FLk~gGhfvisikancidstv~ae~vFa~Ev~klqee 286 (317)
T KOG1596|consen 225 GMVDVIFADVAQPDQARI-VAL-------N-AQYFLKNGGHFVISIKANCIDSTVFAEAVFAAEVKKLQEE 286 (317)
T ss_pred eeEEEEeccCCCchhhhh-hhh-------h-hhhhhccCCeEEEEEecccccccccHHHHHHHHHHHHHHh
Confidence 468999999986652110 111 2 35579999988876533321 12234566666666643
No 269
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=94.60 E-value=0.059 Score=50.52 Aligned_cols=127 Identities=24% Similarity=0.299 Sum_probs=77.6
Q ss_pred CCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhh-cCCceeEEE
Q 019699 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDVII 180 (337)
Q Consensus 102 ~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~-~~~~yDvIi 180 (337)
+.++|+++|--+-.....++.. -.++|.+||||+..+..-.+..... .-.+++.+.-|.++-+.+ ..++||+++
T Consensus 152 ~gK~I~vvGDDDLtsia~aLt~-mpk~iaVvDIDERli~fi~k~aee~----g~~~ie~~~~Dlr~plpe~~~~kFDvfi 226 (354)
T COG1568 152 EGKEIFVVGDDDLTSIALALTG-MPKRIAVVDIDERLIKFIEKVAEEL----GYNNIEAFVFDLRNPLPEDLKRKFDVFI 226 (354)
T ss_pred CCCeEEEEcCchhhHHHHHhcC-CCceEEEEechHHHHHHHHHHHHHh----CccchhheeehhcccChHHHHhhCCeee
Confidence 4688999996554444444433 3489999999999999888765432 235688888898876644 358899999
Q ss_pred EeCCCCCCCCCCcCCchHHHHHHHhccccCCC---ceEEEeCCCCCcCCChhHHHHHHHHHhhhcCce
Q 019699 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPE---GIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYV 245 (337)
Q Consensus 181 ~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~---Gvlv~~~~~p~~~~~~~~~~~i~~~l~~vF~~v 245 (337)
.|++... ++. +-|+.. =-..|+.. |.+-+.... .....-.++.+.+-.-|..|
T Consensus 227 TDPpeTi---~al----k~FlgR-GI~tLkg~~~aGyfgiT~re----ssidkW~eiQr~lIn~~gvV 282 (354)
T COG1568 227 TDPPETI---KAL----KLFLGR-GIATLKGEGCAGYFGITRRE----SSIDKWREIQRILINEMGVV 282 (354)
T ss_pred cCchhhH---HHH----HHHHhc-cHHHhcCCCccceEeeeecc----ccHHHHHHHHHHHHHhcCee
Confidence 9986432 111 234433 23567766 555543211 11223345555555555543
No 270
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.58 E-value=0.05 Score=47.19 Aligned_cols=106 Identities=22% Similarity=0.208 Sum_probs=63.1
Q ss_pred CCeEEEEecchhHHH-HHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEE---EEccHHHHHhhcCCceeE
Q 019699 103 PKTIFIMGGGEGSTA-REILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLEL---VINDARAELESRKESYDV 178 (337)
Q Consensus 103 p~~VLiIG~G~G~~~-~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v---~~~D~~~~l~~~~~~yDv 178 (337)
.++||++|+|--+++ ..++..-+...|..-|-+++.++-.++-...+. ...-.+..+ .+.-+.. .....+||+
T Consensus 30 g~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~-~s~~tsc~vlrw~~~~aqs--q~eq~tFDi 106 (201)
T KOG3201|consen 30 GRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNM-ASSLTSCCVLRWLIWGAQS--QQEQHTFDI 106 (201)
T ss_pred HHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhccc-ccccceehhhHHHHhhhHH--HHhhCcccE
Confidence 589999999955544 445555678899999999999998887654331 011122222 2111111 122468999
Q ss_pred EEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (337)
Q Consensus 179 Ii~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~ 218 (337)
|+..-.-- ..-+.....+. ++..|+|.|.-++.
T Consensus 107 IlaADClF------fdE~h~sLvdt-Ik~lL~p~g~Al~f 139 (201)
T KOG3201|consen 107 ILAADCLF------FDEHHESLVDT-IKSLLRPSGRALLF 139 (201)
T ss_pred EEeccchh------HHHHHHHHHHH-HHHHhCcccceeEe
Confidence 98743200 01112334454 78999999986554
No 271
>PTZ00357 methyltransferase; Provisional
Probab=94.55 E-value=0.11 Score=54.21 Aligned_cols=104 Identities=19% Similarity=0.343 Sum_probs=65.1
Q ss_pred eEEEEecchhHHHHHHHhc----CCCcEEEEEECChHHHHHHHhhhhhccCCCC------CCCeEEEEccHHHHHhhc--
Q 019699 105 TIFIMGGGEGSTAREILRH----KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFS------DPRLELVINDARAELESR-- 172 (337)
Q Consensus 105 ~VLiIG~G~G~~~~~ll~~----~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~------d~rv~v~~~D~~~~l~~~-- 172 (337)
.|+++|+|=|-+....++. .-..+|.+||-||..+...+.... +...+. +.+|+++..|.|.|-...
T Consensus 703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~-N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~ 781 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWA-NDPEWTQLAYTFGHTLEVIVADGRTIATAAEN 781 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHh-cccccccccccCCCeEEEEeCccccccccccc
Confidence 5899999999887666653 223479999999663333322211 111122 468999999999984221
Q ss_pred --------CCceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCC----Cce
Q 019699 173 --------KESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNP----EGI 214 (337)
Q Consensus 173 --------~~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p----~Gv 214 (337)
-++.|+||+.+--.. | .++| +.|-+.. +.+.|++ +||
T Consensus 782 ~s~~~P~~~gKaDIVVSELLGSF--G-DNEL-SPECLDG-aQrfLKdiqhsdGI 830 (1072)
T PTZ00357 782 GSLTLPADFGLCDLIVSELLGSL--G-DNEL-SPECLEA-FHAQLEDIQLSRGI 830 (1072)
T ss_pred ccccccccccccceehHhhhccc--c-cccC-CHHHHHH-HHHhhhhhcccccc
Confidence 137999999885333 1 1233 4566665 5667765 776
No 272
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=94.55 E-value=0.42 Score=46.12 Aligned_cols=110 Identities=12% Similarity=0.071 Sum_probs=71.2
Q ss_pred CCCCeEEEEecchhHHHHHHHhcC----CCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEE--EEccH---HHHHhh
Q 019699 101 PNPKTIFIMGGGEGSTAREILRHK----TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLEL--VINDA---RAELES 171 (337)
Q Consensus 101 ~~p~~VLiIG~G~G~~~~~ll~~~----~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v--~~~D~---~~~l~~ 171 (337)
+.+..++++|+|+|.=.+.+++.. ...+.+.|||+.+.++.+.+.+... .-|.+++ +.+|- ..++..
T Consensus 75 ~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~----~~p~l~v~~l~gdy~~~l~~l~~ 150 (319)
T TIGR03439 75 PSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLG----NFSHVRCAGLLGTYDDGLAWLKR 150 (319)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhc----cCCCeEEEEEEecHHHHHhhccc
Confidence 455689999999998766555532 2357899999999999998887621 1366766 66654 445543
Q ss_pred --cCCceeEEEEeCC-CCCCCCCCcCCchHHHHHHHhcc-ccCCCceEEEeC
Q 019699 172 --RKESYDVIIGDLA-DPIEGGPCYKLYTKSFYEFVVKP-RLNPEGIFVTQA 219 (337)
Q Consensus 172 --~~~~yDvIi~D~~-dp~~~~p~~~L~t~ef~~~~~~~-~L~p~Gvlv~~~ 219 (337)
......+|+.=.+ -.+ ...--...|++. +++ .|+|+|.|++-.
T Consensus 151 ~~~~~~~r~~~flGSsiGN----f~~~ea~~fL~~-~~~~~l~~~d~lLiG~ 197 (319)
T TIGR03439 151 PENRSRPTTILWLGSSIGN----FSRPEAAAFLAG-FLATALSPSDSFLIGL 197 (319)
T ss_pred ccccCCccEEEEeCccccC----CCHHHHHHHHHH-HHHhhCCCCCEEEEec
Confidence 1234555554332 111 111123478998 788 999999988754
No 273
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=94.45 E-value=0.53 Score=40.27 Aligned_cols=143 Identities=20% Similarity=0.239 Sum_probs=78.9
Q ss_pred eEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhh----ccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699 105 TIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVV----NKEAFSDPRLELVINDARAELESRKESYDVII 180 (337)
Q Consensus 105 ~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~----~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi 180 (337)
+|.+||+|.++++....-.....+|++...+++.++..++.-.. ....+ .+++++ ..|..+.++ .-|+|+
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l-~~~i~~-t~dl~~a~~----~ad~Ii 74 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKL-PENIKA-TTDLEEALE----DADIII 74 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBE-ETTEEE-ESSHHHHHT----T-SEEE
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCccc-Cccccc-ccCHHHHhC----cccEEE
Confidence 68999999887764433222347899999999888776664221 10011 134543 567666664 469999
Q ss_pred EeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhhcCceeEEEeeccccC----
Q 019699 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSFA---- 256 (337)
Q Consensus 181 ~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~vF~~v~~~~~~vP~~~---- 256 (337)
+-.+. ..-+++++. ++..|+++=.++.-.. + + .......+.+.+++.++.-......-|++.
T Consensus 75 iavPs---------~~~~~~~~~-l~~~l~~~~~ii~~~K--G-~-~~~~~~~~~~~i~~~~~~~~~~~lsGP~~A~Ei~ 140 (157)
T PF01210_consen 75 IAVPS---------QAHREVLEQ-LAPYLKKGQIIISATK--G-F-EPGTLLLLSEVIEEILPIPRIAVLSGPSFAEEIA 140 (157)
T ss_dssp E-S-G---------GGHHHHHHH-HTTTSHTT-EEEETS---S-E-ETTEEEEHHHHHHHHHSSCGEEEEESS--HHHHH
T ss_pred ecccH---------HHHHHHHHH-HhhccCCCCEEEEecC--C-c-ccCCCccHHHHHHHHhhhcceEEeeCccHHHHHH
Confidence 88652 123688998 7889976666664432 1 1 111122333455556665433334557662
Q ss_pred --CceEEEEEecC
Q 019699 257 --DTWGWIMASDS 267 (337)
Q Consensus 257 --~~~~~~~as~~ 267 (337)
....+++||++
T Consensus 141 ~~~pt~~~~as~~ 153 (157)
T PF01210_consen 141 EGKPTAVVIASKN 153 (157)
T ss_dssp TT--EEEEEEESS
T ss_pred cCCCeEEEEEecc
Confidence 13456777764
No 274
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=94.40 E-value=0.21 Score=44.94 Aligned_cols=113 Identities=16% Similarity=0.163 Sum_probs=80.8
Q ss_pred CeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhh----ccCCCCCCCeEEEEccHHHHHhhc--CCcee
Q 019699 104 KTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVV----NKEAFSDPRLELVINDARAELESR--KESYD 177 (337)
Q Consensus 104 ~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~----~~~~~~d~rv~v~~~D~~~~l~~~--~~~yD 177 (337)
-...+||||-|+++.++.-.+|..-|.+.||--.|.+-.++.... +.+.+ -+++.+....+..|+.+. .++-+
T Consensus 62 vefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~-~~ni~vlr~namk~lpn~f~kgqLs 140 (249)
T KOG3115|consen 62 VEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQ-YPNISVLRTNAMKFLPNFFEKGQLS 140 (249)
T ss_pred ceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccc-cccceeeeccchhhccchhhhcccc
Confidence 468999999999999999999999999999999999988887542 11222 467888889999998764 34444
Q ss_pred EEEEeCCCCCC--CCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699 178 VIIGDLADPIE--GGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (337)
Q Consensus 178 vIi~D~~dp~~--~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~ 218 (337)
-++.-.+||.. .-....+.+...... ..-.|+++|++.+-
T Consensus 141 kmff~fpdpHfk~~khk~rii~~~l~~e-yay~l~~gg~~yti 182 (249)
T KOG3115|consen 141 KMFFLFPDPHFKARKHKWRIITSTLLSE-YAYVLREGGILYTI 182 (249)
T ss_pred cceeecCChhHhhhhccceeechhHHHH-HHhhhhcCceEEEE
Confidence 45555555531 111134555566666 56789999988764
No 275
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=94.16 E-value=0.49 Score=46.51 Aligned_cols=98 Identities=23% Similarity=0.396 Sum_probs=56.8
Q ss_pred CCCeEEEEecch-hHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699 102 NPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (337)
Q Consensus 102 ~p~~VLiIG~G~-G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi 180 (337)
.+.+|++||+|. |..+...++..+ .+|+++|.+++-.+.+.+.+.. .+.....+ .+.+.+.-..+|+||
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lG-a~V~v~d~~~~~~~~l~~~~g~--------~v~~~~~~-~~~l~~~l~~aDvVI 235 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLG-ATVTILDINIDRLRQLDAEFGG--------RIHTRYSN-AYEIEDAVKRADLLI 235 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCC-CeEEEEECCHHHHHHHHHhcCc--------eeEeccCC-HHHHHHHHccCCEEE
Confidence 567899999983 444455555554 4799999998876655543321 11111222 122332235689999
Q ss_pred EeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEE
Q 019699 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFV 216 (337)
Q Consensus 181 ~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv 216 (337)
.-..-|....| .+.+.+.++ .++++++++
T Consensus 236 ~a~~~~g~~~p--~lit~~~l~-----~mk~g~vIv 264 (370)
T TIGR00518 236 GAVLIPGAKAP--KLVSNSLVA-----QMKPGAVIV 264 (370)
T ss_pred EccccCCCCCC--cCcCHHHHh-----cCCCCCEEE
Confidence 86643321123 567776544 368888765
No 276
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=94.13 E-value=0.062 Score=48.00 Aligned_cols=100 Identities=22% Similarity=0.239 Sum_probs=68.1
Q ss_pred CCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEEE-
Q 019699 103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG- 181 (337)
Q Consensus 103 p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~- 181 (337)
.|+||++|.|+|..+....+. +...|...|++|..++..+-+-..+ .-.+.+...|..- .+..||+|+.
T Consensus 80 gkrVLd~gagsgLvaIAaa~a-GA~~v~a~d~~P~~~~ai~lNa~an-----gv~i~~~~~d~~g----~~~~~Dl~Lag 149 (218)
T COG3897 80 GKRVLDLGAGSGLVAIAAARA-GAAEVVAADIDPWLEQAIRLNAAAN-----GVSILFTHADLIG----SPPAFDLLLAG 149 (218)
T ss_pred cceeeecccccChHHHHHHHh-hhHHHHhcCCChHHHHHhhcchhhc-----cceeEEeeccccC----CCcceeEEEee
Confidence 699999999999998888775 5788999999999888887765544 2456777777532 4578999876
Q ss_pred eCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCCC
Q 019699 182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPA 222 (337)
Q Consensus 182 D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p 222 (337)
|.+... ..+. .... .+..|+..|.-++ .+.|
T Consensus 150 Dlfy~~----~~a~---~l~~--~~~~l~~~g~~vl-vgdp 180 (218)
T COG3897 150 DLFYNH----TEAD---RLIP--WKDRLAEAGAAVL-VGDP 180 (218)
T ss_pred ceecCc----hHHH---HHHH--HHHHHHhCCCEEE-EeCC
Confidence 555211 1111 1112 2556777886665 3344
No 277
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=94.05 E-value=3.8 Score=38.85 Aligned_cols=93 Identities=20% Similarity=0.222 Sum_probs=55.9
Q ss_pred CCeEEEEecch--hHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699 103 PKTIFIMGGGE--GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (337)
Q Consensus 103 p~~VLiIG~G~--G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi 180 (337)
-++|.+||+|. +.+++.+.+.....+|++++.+++..+.+++. .. ... ...+..+.+ +..|+||
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~-g~--------~~~-~~~~~~~~~----~~aDvVi 71 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARAREL-GL--------GDR-VTTSAAEAV----KGADLVI 71 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhC-CC--------Cce-ecCCHHHHh----cCCCEEE
Confidence 36899999985 33455555442224899999999888777653 11 001 122323333 4589999
Q ss_pred EeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCC
Q 019699 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG 220 (337)
Q Consensus 181 ~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~ 220 (337)
+-.+... ..++++. +...++++.+++ ..+
T Consensus 72 iavp~~~---------~~~v~~~-l~~~l~~~~iv~-dvg 100 (307)
T PRK07502 72 LCVPVGA---------SGAVAAE-IAPHLKPGAIVT-DVG 100 (307)
T ss_pred ECCCHHH---------HHHHHHH-HHhhCCCCCEEE-eCc
Confidence 8875321 2455666 566788887654 444
No 278
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=93.99 E-value=0.74 Score=43.56 Aligned_cols=174 Identities=17% Similarity=0.143 Sum_probs=93.4
Q ss_pred CCeEEEEecc--hhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699 103 PKTIFIMGGG--EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (337)
Q Consensus 103 p~~VLiIG~G--~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi 180 (337)
-.+|+++|+| +|.+++.+.+......|+..|.+..-.+.+.+. ... |... .+ .........|+||
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~l-gv~-----d~~~----~~---~~~~~~~~aD~Vi 69 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALEL-GVI-----DELT----VA---GLAEAAAEADLVI 69 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhc-Ccc-----cccc----cc---hhhhhcccCCEEE
Confidence 3589999998 566777777655455678888888777776542 111 1100 01 1112235689999
Q ss_pred EeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhhcCceeEEEeeccccCC---
Q 019699 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSFAD--- 257 (337)
Q Consensus 181 ~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~vF~~v~~~~~~vP~~~~--- 257 (337)
+..|-. .+.++.+. +...|++|-+++ -.++. -..+++.+++..+....|...=|.+|.
T Consensus 70 vavPi~---------~~~~~l~~-l~~~l~~g~iv~-Dv~S~--------K~~v~~a~~~~~~~~~~~vg~HPM~G~~~~ 130 (279)
T COG0287 70 VAVPIE---------ATEEVLKE-LAPHLKKGAIVT-DVGSV--------KSSVVEAMEKYLPGDVRFVGGHPMFGPEAD 130 (279)
T ss_pred EeccHH---------HHHHHHHH-hcccCCCCCEEE-ecccc--------cHHHHHHHHHhccCCCeeEecCCCCCCccc
Confidence 997522 25678887 677888877664 54432 135566777776552123222244432
Q ss_pred ----ceEEEEEecCCC-C-CCHHHHHHHHHhccCCCceeeCHHHHHHhc----cCcHHHHHh
Q 019699 258 ----TWGWIMASDSPF-T-LSAEELDMKVKKNIKGENRYLDGKTISSSS----TLSKAVRKS 309 (337)
Q Consensus 258 ----~~~~~~as~~p~-~-~~~~~l~~r~~~~~~~~l~yy~~~~h~~~f----~lP~~~~~~ 309 (337)
.+.+++-+..+. + -...++.+-+.. ....+-+-+++.|-..+ .||-++.-.
T Consensus 131 ~~lf~~~~~vltp~~~~~~~~~~~~~~~~~~-~ga~~v~~~~eeHD~~~a~vshLpH~~a~a 191 (279)
T COG0287 131 AGLFENAVVVLTPSEGTEKEWVEEVKRLWEA-LGARLVEMDAEEHDRVMAAVSHLPHAAALA 191 (279)
T ss_pred ccccCCCEEEEcCCCCCCHHHHHHHHHHHHH-cCCEEEEcChHHHhHHHHHHHHHHHHHHHH
Confidence 122233332221 1 011222222222 23467888999987765 355554433
No 279
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=93.94 E-value=0.4 Score=46.51 Aligned_cols=92 Identities=22% Similarity=0.248 Sum_probs=62.6
Q ss_pred CCCCeEEEEecc-hhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEE---ccHHHHHhhcCCce
Q 019699 101 PNPKTIFIMGGG-EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI---NDARAELESRKESY 176 (337)
Q Consensus 101 ~~p~~VLiIG~G-~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~---~D~~~~l~~~~~~y 176 (337)
.+.++|+++|.| -|.++..+++... .+|++++++++-.+.|++.-.. .++. .|..+-++ +.+
T Consensus 165 ~pG~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~~~K~e~a~~lGAd----------~~i~~~~~~~~~~~~---~~~ 230 (339)
T COG1064 165 KPGKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRSEEKLELAKKLGAD----------HVINSSDSDALEAVK---EIA 230 (339)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcC-CeEEEEeCChHHHHHHHHhCCc----------EEEEcCCchhhHHhH---hhC
Confidence 456899999987 3455677777555 8999999999999999986321 2222 23333333 459
Q ss_pred eEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCC
Q 019699 177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG 220 (337)
Q Consensus 177 DvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~ 220 (337)
|+||.-.. +. .|-+ .-+.|+++|.+++-..
T Consensus 231 d~ii~tv~-~~-----------~~~~--~l~~l~~~G~~v~vG~ 260 (339)
T COG1064 231 DAIIDTVG-PA-----------TLEP--SLKALRRGGTLVLVGL 260 (339)
T ss_pred cEEEECCC-hh-----------hHHH--HHHHHhcCCEEEEECC
Confidence 99997765 21 2223 3468999999987653
No 280
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=93.74 E-value=0.43 Score=45.87 Aligned_cols=101 Identities=14% Similarity=0.146 Sum_probs=63.9
Q ss_pred CCCCeEEEEecch-hHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhc--CCcee
Q 019699 101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR--KESYD 177 (337)
Q Consensus 101 ~~p~~VLiIG~G~-G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~--~~~yD 177 (337)
....+||++|+|. |..+..+++-.+..+|+.+|+++.=+++||+ |+... .....+-. ..++.++-+++. ...+|
T Consensus 168 k~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~-~Ga~~-~~~~~~~~-~~~~~~~~v~~~~g~~~~d 244 (354)
T KOG0024|consen 168 KKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK-FGATV-TDPSSHKS-SPQELAELVEKALGKKQPD 244 (354)
T ss_pred ccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH-hCCeE-Eeeccccc-cHHHHHHHHHhhccccCCC
Confidence 3568999999995 5555666677888999999999999999999 54321 00111111 334445555442 25689
Q ss_pred EEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEE
Q 019699 178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT 217 (337)
Q Consensus 178 vIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~ 217 (337)
+.|--+-. .+ -++. .-..|+.+|.+++
T Consensus 245 ~~~dCsG~----~~--------~~~a-ai~a~r~gGt~vl 271 (354)
T KOG0024|consen 245 VTFDCSGA----EV--------TIRA-AIKATRSGGTVVL 271 (354)
T ss_pred eEEEccCc----hH--------HHHH-HHHHhccCCEEEE
Confidence 88854421 11 1222 3468999999554
No 281
>PRK10637 cysG siroheme synthase; Provisional
Probab=93.73 E-value=0.28 Score=49.61 Aligned_cols=99 Identities=16% Similarity=0.212 Sum_probs=59.5
Q ss_pred HhHHHhcCCCCCeEEEEecchhHHH--HHHHhcCCCcEEEEE--ECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHH
Q 019699 93 VHPALLHHPNPKTIFIMGGGEGSTA--REILRHKTVEKVVMC--DIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE 168 (337)
Q Consensus 93 ~~~~l~~~~~p~~VLiIG~G~G~~~--~~ll~~~~~~~v~~V--Eid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~ 168 (337)
.+.|++..-+.++||+||||.-+.- +.+++. ..+|++| |+++++-++++ ..+++++..+..
T Consensus 2 ~~~P~~~~l~~~~vlvvGgG~vA~rk~~~ll~~--ga~v~visp~~~~~~~~l~~-----------~~~i~~~~~~~~-- 66 (457)
T PRK10637 2 DHLPIFCQLRDRDCLLVGGGDVAERKARLLLDA--GARLTVNALAFIPQFTAWAD-----------AGMLTLVEGPFD-- 66 (457)
T ss_pred CeeceEEEcCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEcCCCCHHHHHHHh-----------CCCEEEEeCCCC--
Confidence 3467777778899999999987664 344443 4577776 77777765543 246666664432
Q ss_pred HhhcCCceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCC
Q 019699 169 LESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG 220 (337)
Q Consensus 169 l~~~~~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~ 220 (337)
...-+.+++||....|+. .....++ ..+..|+++-...
T Consensus 67 -~~dl~~~~lv~~at~d~~--------~n~~i~~-----~a~~~~~lvN~~d 104 (457)
T PRK10637 67 -ESLLDTCWLAIAATDDDA--------VNQRVSE-----AAEARRIFCNVVD 104 (457)
T ss_pred -hHHhCCCEEEEECCCCHH--------HhHHHHH-----HHHHcCcEEEECC
Confidence 221245788887765432 1233333 3445688874443
No 282
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=93.73 E-value=0.75 Score=39.96 Aligned_cols=90 Identities=18% Similarity=0.302 Sum_probs=46.9
Q ss_pred CCCCeEEEEecchhHH--HHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeE
Q 019699 101 PNPKTIFIMGGGEGST--AREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV 178 (337)
Q Consensus 101 ~~p~~VLiIG~G~G~~--~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDv 178 (337)
-..++|+++|-|.-+- ++.+... ..+|+++|+|| +.+.+.+.. .+++. . +.+.-...|+
T Consensus 21 l~Gk~vvV~GYG~vG~g~A~~lr~~--Ga~V~V~e~DP--i~alqA~~d---------Gf~v~--~----~~~a~~~adi 81 (162)
T PF00670_consen 21 LAGKRVVVIGYGKVGKGIARALRGL--GARVTVTEIDP--IRALQAAMD---------GFEVM--T----LEEALRDADI 81 (162)
T ss_dssp -TTSEEEEE--SHHHHHHHHHHHHT--T-EEEEE-SSH--HHHHHHHHT---------T-EEE-------HHHHTTT-SE
T ss_pred eCCCEEEEeCCCcccHHHHHHHhhC--CCEEEEEECCh--HHHHHhhhc---------CcEec--C----HHHHHhhCCE
Confidence 3578999999997543 4444443 47999999999 444444332 12322 2 2222356898
Q ss_pred EEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCCC
Q 019699 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPA 222 (337)
Q Consensus 179 Ii~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p 222 (337)
||.-.- . ....+.+.|+. |+ +|.++.|.++.
T Consensus 82 ~vtaTG------~-~~vi~~e~~~~-----mk-dgail~n~Gh~ 112 (162)
T PF00670_consen 82 FVTATG------N-KDVITGEHFRQ-----MK-DGAILANAGHF 112 (162)
T ss_dssp EEE-SS------S-SSSB-HHHHHH-----S--TTEEEEESSSS
T ss_pred EEECCC------C-ccccCHHHHHH-----hc-CCeEEeccCcC
Confidence 887642 2 24456666664 44 56677898754
No 283
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=93.57 E-value=0.058 Score=49.05 Aligned_cols=60 Identities=17% Similarity=0.265 Sum_probs=47.9
Q ss_pred CCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHH
Q 019699 103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE 168 (337)
Q Consensus 103 p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~ 168 (337)
..=|..||-|.|++.+.++.. +.+++.+||+|+..+.-.+..-.. .+.++.+|++|+..|
T Consensus 51 ~~~v~eIgPgpggitR~il~a-~~~RL~vVE~D~RFip~LQ~L~EA-----a~~~~~IHh~D~LR~ 110 (326)
T KOG0821|consen 51 NAYVYEIGPGPGGITRSILNA-DVARLLVVEKDTRFIPGLQMLSEA-----APGKLRIHHGDVLRF 110 (326)
T ss_pred cceeEEecCCCCchhHHHHhc-chhheeeeeeccccChHHHHHhhc-----CCcceEEecccccee
Confidence 346889999999999999986 578999999999988766543221 246899999999766
No 284
>PRK13699 putative methylase; Provisional
Probab=93.29 E-value=0.2 Score=45.93 Aligned_cols=61 Identities=10% Similarity=0.133 Sum_probs=42.1
Q ss_pred eEEEEccHHHHHhhc-CCceeEEEEeCCCCC--CC--C-CC-cC---CchHHHHHHHhccccCCCceEEEeC
Q 019699 158 LELVINDARAELESR-KESYDVIIGDLADPI--EG--G-PC-YK---LYTKSFYEFVVKPRLNPEGIFVTQA 219 (337)
Q Consensus 158 v~v~~~D~~~~l~~~-~~~yDvIi~D~~dp~--~~--~-p~-~~---L~t~ef~~~~~~~~L~p~Gvlv~~~ 219 (337)
.+++.+|+.+.++.. +++.|+||.|++-.. .. + .. .. -+..++++. +.++|+|||.+++..
T Consensus 2 ~~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E-~~RVLKpgg~l~if~ 72 (227)
T PRK13699 2 SRFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNE-MYRVLKKDALMVSFY 72 (227)
T ss_pred CeEEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHH-HHHHcCCCCEEEEEe
Confidence 368899999999775 588999999997421 00 1 00 01 112456677 689999999988754
No 285
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=93.29 E-value=0.5 Score=45.34 Aligned_cols=97 Identities=18% Similarity=0.308 Sum_probs=58.5
Q ss_pred CCCeEEEEecch-hHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699 102 NPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (337)
Q Consensus 102 ~p~~VLiIG~G~-G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi 180 (337)
..++||++|+|. |..+..+++..+..+|.+++.+++-.+.++++ +... .+ +.+ ..|..++++. .+.+|+||
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~l-Ga~~-vi-~~~----~~~~~~~~~~-~g~~D~vi 240 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREM-GADK-LV-NPQ----NDDLDHYKAE-KGYFDVSF 240 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHc-CCcE-Ee-cCC----cccHHHHhcc-CCCCCEEE
Confidence 467999998753 34456667766666899999999999999884 2210 01 110 1222333332 24599887
Q ss_pred EeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (337)
Q Consensus 181 ~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~ 219 (337)
|... .+ ..++. +.+.|+++|.++.-.
T Consensus 241 -d~~G----~~-------~~~~~-~~~~l~~~G~iv~~G 266 (343)
T PRK09880 241 -EVSG----HP-------SSINT-CLEVTRAKGVMVQVG 266 (343)
T ss_pred -ECCC----CH-------HHHHH-HHHHhhcCCEEEEEc
Confidence 5431 11 22344 457899999988653
No 286
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=93.23 E-value=1.5 Score=43.98 Aligned_cols=132 Identities=14% Similarity=0.147 Sum_probs=68.1
Q ss_pred CCCeEEEEecchhHH-HHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699 102 NPKTIFIMGGGEGST-AREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (337)
Q Consensus 102 ~p~~VLiIG~G~G~~-~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi 180 (337)
..++|+++|.|.-+. ....++..+ .+|+++|+|+.-...+... + +++. +..+.+ +..|+||
T Consensus 211 ~Gk~VlViG~G~IG~~vA~~lr~~G-a~ViV~d~dp~ra~~A~~~-G----------~~v~--~l~eal----~~aDVVI 272 (425)
T PRK05476 211 AGKVVVVAGYGDVGKGCAQRLRGLG-ARVIVTEVDPICALQAAMD-G----------FRVM--TMEEAA----ELGDIFV 272 (425)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCC-CEEEEEcCCchhhHHHHhc-C----------CEec--CHHHHH----hCCCEEE
Confidence 578999999986443 233344444 5899999999654443321 1 1111 222333 3589987
Q ss_pred EeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhhcCceeEEEeeccccCCceE
Q 019699 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSFADTWG 260 (337)
Q Consensus 181 ~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~vF~~v~~~~~~vP~~~~~~~ 260 (337)
.-. +. ...++.+ ..+.+++|++++ |.+....-.+.+.+.+.....+++=|++.-|.. |. +...
T Consensus 273 ~aT------G~-~~vI~~~-----~~~~mK~Gaili-NvG~~d~Eid~~~L~~~~~~~~~v~~~v~~y~~--~~--g~~i 335 (425)
T PRK05476 273 TAT------GN-KDVITAE-----HMEAMKDGAILA-NIGHFDNEIDVAALEELAVKWREIKPQVDEYTL--PD--GKRI 335 (425)
T ss_pred ECC------CC-HHHHHHH-----HHhcCCCCCEEE-EcCCCCCccChHHHhhcCcceeecCCCceEEEe--CC--CCEE
Confidence 543 11 1233332 235688888765 665432112222233222233455677766654 21 2334
Q ss_pred EEEEecCC
Q 019699 261 WIMASDSP 268 (337)
Q Consensus 261 ~~~as~~p 268 (337)
++++..++
T Consensus 336 ~lLa~Grl 343 (425)
T PRK05476 336 ILLAEGRL 343 (425)
T ss_pred EEEeCCcc
Confidence 55565443
No 287
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=93.22 E-value=0.4 Score=40.65 Aligned_cols=107 Identities=24% Similarity=0.211 Sum_probs=63.0
Q ss_pred EEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCC-ceeEEEEeCC-CCCCCC--CCcCCchHHHHHH
Q 019699 128 KVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKE-SYDVIIGDLA-DPIEGG--PCYKLYTKSFYEF 203 (337)
Q Consensus 128 ~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~-~yDvIi~D~~-dp~~~~--p~~~L~t~ef~~~ 203 (337)
+|.+.||.++.++.+++.+.... ...|++++.+.=....+-.+. +.|+++-++- -|..+- .-..-.|..-++.
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~---~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~ 77 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAG---LEDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEA 77 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT----GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcC---CCCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHH
Confidence 58899999999999999886432 124899988765443332334 8999999985 232110 0011234556776
Q ss_pred HhccccCCCceEEEeC--CCCCcCCChhHHHHHHHHHhhh
Q 019699 204 VVKPRLNPEGIFVTQA--GPAGIFSHTEVFSCIYNTLRQV 241 (337)
Q Consensus 204 ~~~~~L~p~Gvlv~~~--~~p~~~~~~~~~~~i~~~l~~v 241 (337)
+.+.|++||++++-. |+++ ..+....+.+.+++.
T Consensus 78 -al~lL~~gG~i~iv~Y~GH~g---G~eE~~av~~~~~~L 113 (140)
T PF06962_consen 78 -ALELLKPGGIITIVVYPGHPG---GKEESEAVEEFLASL 113 (140)
T ss_dssp -HHHHEEEEEEEEEEE--STCH---HHHHHHHHHHHHHTS
T ss_pred -HHHhhccCCEEEEEEeCCCCC---CHHHHHHHHHHHHhC
Confidence 678999999887654 3331 233444555555544
No 288
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=93.03 E-value=0.91 Score=40.87 Aligned_cols=96 Identities=15% Similarity=0.229 Sum_probs=56.0
Q ss_pred HHhcCCCCCeEEEEecchhHH--HHHHHhcCCCcEEEEEECC--hHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhh
Q 019699 96 ALLHHPNPKTIFIMGGGEGST--AREILRHKTVEKVVMCDID--EEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES 171 (337)
Q Consensus 96 ~l~~~~~p~~VLiIG~G~G~~--~~~ll~~~~~~~v~~VEid--~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~ 171 (337)
|++..-..++||+||+|.=+. ++.+++. ..+|++|+.+ +++.++++ ..+++++.++...-
T Consensus 2 P~~l~l~gk~vlVvGgG~va~rk~~~Ll~~--ga~VtVvsp~~~~~l~~l~~-----------~~~i~~~~~~~~~~--- 65 (205)
T TIGR01470 2 PVFANLEGRAVLVVGGGDVALRKARLLLKA--GAQLRVIAEELESELTLLAE-----------QGGITWLARCFDAD--- 65 (205)
T ss_pred CeEEEcCCCeEEEECcCHHHHHHHHHHHHC--CCEEEEEcCCCCHHHHHHHH-----------cCCEEEEeCCCCHH---
Confidence 444445678999999996554 4555553 4688888544 44444432 23677777664321
Q ss_pred cCCceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCC
Q 019699 172 RKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG 220 (337)
Q Consensus 172 ~~~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~ 220 (337)
.-..+|+||..+.++. + ....++. .+..|+++-.++
T Consensus 66 dl~~~~lVi~at~d~~-------l-n~~i~~~-----a~~~~ilvn~~d 101 (205)
T TIGR01470 66 ILEGAFLVIAATDDEE-------L-NRRVAHA-----ARARGVPVNVVD 101 (205)
T ss_pred HhCCcEEEEECCCCHH-------H-HHHHHHH-----HHHcCCEEEECC
Confidence 1246999998765431 1 2233343 345688874443
No 289
>PHA01634 hypothetical protein
Probab=92.91 E-value=0.22 Score=41.63 Aligned_cols=75 Identities=20% Similarity=0.139 Sum_probs=53.3
Q ss_pred CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (337)
Q Consensus 101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi 180 (337)
-..++|++||++-|.++..++.. +.+.|.++|.++...+..++....+.- -|..+-.. +| ...=+.||+-.
T Consensus 27 vk~KtV~dIGA~iGdSaiYF~l~-GAK~Vva~E~~~kl~k~~een~k~nnI--~DK~v~~~-----eW-~~~Y~~~Di~~ 97 (156)
T PHA01634 27 VYQRTIQIVGADCGSSALYFLLR-GASFVVQYEKEEKLRKKWEEVCAYFNI--CDKAVMKG-----EW-NGEYEDVDIFV 97 (156)
T ss_pred ecCCEEEEecCCccchhhHHhhc-CccEEEEeccCHHHHHHHHHHhhhhee--eeceeecc-----cc-cccCCCcceEE
Confidence 46789999999999999988864 689999999999999999887654310 01111100 12 11226799999
Q ss_pred EeCC
Q 019699 181 GDLA 184 (337)
Q Consensus 181 ~D~~ 184 (337)
+|.-
T Consensus 98 iDCe 101 (156)
T PHA01634 98 MDCE 101 (156)
T ss_pred EEcc
Confidence 9974
No 290
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=92.84 E-value=1.1 Score=43.78 Aligned_cols=111 Identities=19% Similarity=0.150 Sum_probs=65.4
Q ss_pred CCCCeEEEEecch-hHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEcc-HHHHHhhc--CCce
Q 019699 101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVIND-ARAELESR--KESY 176 (337)
Q Consensus 101 ~~p~~VLiIG~G~-G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D-~~~~l~~~--~~~y 176 (337)
.+..+||++|+|. |..+..+++..+..++++++.+++..+.++++... .-+.....| ..+-+... .+.+
T Consensus 183 ~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~~-------~vi~~~~~~~~~~~l~~~~~~~~~ 255 (386)
T cd08283 183 KPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLGA-------ETINFEEVDDVVEALRELTGGRGP 255 (386)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCc-------EEEcCCcchHHHHHHHHHcCCCCC
Confidence 4567899999887 77788888877666799999999999999986432 111111121 33333322 2469
Q ss_pred eEEEEeCCCCCCCCCCcCC---------chHHHHHHHhccccCCCceEEEeC
Q 019699 177 DVIIGDLADPIEGGPCYKL---------YTKSFYEFVVKPRLNPEGIFVTQA 219 (337)
Q Consensus 177 DvIi~D~~dp~~~~p~~~L---------~t~ef~~~~~~~~L~p~Gvlv~~~ 219 (337)
|+|+--........+..++ .+..-++. +.+.|+++|.++.-.
T Consensus 256 D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~G~iv~~g 306 (386)
T cd08283 256 DVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALRE-AIQAVRKGGTVSIIG 306 (386)
T ss_pred CEEEECCCCcccccccccccccccccccCchHHHHH-HHHHhccCCEEEEEc
Confidence 9887533211000000000 01233454 567899999987653
No 291
>COG4121 Uncharacterized conserved protein [Function unknown]
Probab=92.84 E-value=0.11 Score=48.19 Aligned_cols=113 Identities=17% Similarity=0.109 Sum_probs=78.4
Q ss_pred CCeEEEEecchhHHHHHHHhcC------------CCcEEEEEECChHHHHHHHh-------------hhhh-c-------
Q 019699 103 PKTIFIMGGGEGSTAREILRHK------------TVEKVVMCDIDEEVVEFCKS-------------YLVV-N------- 149 (337)
Q Consensus 103 p~~VLiIG~G~G~~~~~ll~~~------------~~~~v~~VEid~~vi~~a~~-------------~f~~-~------- 149 (337)
.-.|+++|.|+|.....+.+.. ....++.+|.+|....-++. ..+. .
T Consensus 59 ~~~i~E~gfgtglnfl~~~~~~~~~~~~~~~~~~~~l~~~S~e~~P~~~~~l~~l~~~pel~~~~~~l~~~~~~~~~~~~ 138 (252)
T COG4121 59 ILQILEIGFGTGLNFLTAHLAIGDARQAKLEVVLLDLKFDSIELDPFSPPKCPALWTVPFLCHLADALAPTGPLATYGCA 138 (252)
T ss_pred ceeehhhhcccchhHHHHHhhhhhhhhccccccccccceEEEEeCCCChhhhHHHhhhhhHHHHHHHHhhccCcccchhH
Confidence 3467889999997766555432 22356788888754332221 1110 0
Q ss_pred cCCC-CCCCeEEEEccHHHHHhhcCC---ceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699 150 KEAF-SDPRLELVINDARAELESRKE---SYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (337)
Q Consensus 150 ~~~~-~d~rv~v~~~D~~~~l~~~~~---~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~ 219 (337)
...+ ..-.+.++++|+.+.+..... ++|+.+.|.+.|.. .| .+++.|++.. ++++..+||.++..+
T Consensus 139 r~~~~g~~~l~l~~gd~~~~~p~~~~~~~~~dAwflDgFsP~k-NP--~mW~~e~l~~-~a~~~~~~~~l~t~s 208 (252)
T COG4121 139 AAVRHGLLLLGLVIGDAGDGIPPVPRRRPGTDAWFLDGFRPVK-NP--EMWEDELLNL-MARIPYRDPTLATFA 208 (252)
T ss_pred HhhhcchheeeeeeeehhhcCCcccccccCccEEecCCccccC-Ch--hhccHHHHHH-HHhhcCCCCceechH
Confidence 0112 234678999999999887766 79999999998874 44 7899999998 899999999998754
No 292
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=92.83 E-value=0.51 Score=43.31 Aligned_cols=140 Identities=22% Similarity=0.244 Sum_probs=83.7
Q ss_pred CCCeEEEEecchhHHHHHHHhc------CCCc---EEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHH------
Q 019699 102 NPKTIFIMGGGEGSTAREILRH------KTVE---KVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDAR------ 166 (337)
Q Consensus 102 ~p~~VLiIG~G~G~~~~~ll~~------~~~~---~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~------ 166 (337)
.-+||.++++.-|.+...+.+. ...+ .|++||+.+.+ | -+.|.-+.+|.-
T Consensus 41 gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~Ma--------P-------I~GV~qlq~DIT~~stae 105 (294)
T KOG1099|consen 41 GVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMA--------P-------IEGVIQLQGDITSASTAE 105 (294)
T ss_pred hhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCC--------c-------cCceEEeecccCCHhHHH
Confidence 3579999999999887655542 1112 39999996621 1 245666666652
Q ss_pred HHHhhc-CCceeEEEEeCCCCCCCCCCcCCchHHHHHH--------HhccccCCCceEEEeCCCCCcCCChhHHHHHHHH
Q 019699 167 AELESR-KESYDVIIGDLADPIEGGPCYKLYTKSFYEF--------VVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNT 237 (337)
Q Consensus 167 ~~l~~~-~~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~--------~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~ 237 (337)
..++.. .++-|+|++|.. |...|. ..+ .||.+. +...+|+|||.|+... +..+...-++..
T Consensus 106 ~Ii~hfggekAdlVvcDGA-PDvTGl-Hd~--DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKi------fRg~~tslLysq 175 (294)
T KOG1099|consen 106 AIIEHFGGEKADLVVCDGA-PDVTGL-HDL--DEYVQAQLLLAALNIATCVLKPGGSFVAKI------FRGRDTSLLYSQ 175 (294)
T ss_pred HHHHHhCCCCccEEEeCCC-CCcccc-ccH--HHHHHHHHHHHHHHHHhheecCCCeeehhh------hccCchHHHHHH
Confidence 223332 368999999986 322232 111 123221 1357899999999764 223334566788
Q ss_pred HhhhcCceeEEEeeccccC-CceEEEEEecC
Q 019699 238 LRQVFKYVVPYSAHIPSFA-DTWGWIMASDS 267 (337)
Q Consensus 238 l~~vF~~v~~~~~~vP~~~-~~~~~~~as~~ 267 (337)
|+..|..|..+.-. .+.. ..-.|++|..-
T Consensus 176 l~~ff~kv~~~KPr-sSR~sSiEaFvvC~~~ 205 (294)
T KOG1099|consen 176 LRKFFKKVTCAKPR-SSRNSSIEAFVVCLGY 205 (294)
T ss_pred HHHHhhceeeecCC-ccccccceeeeeeccc
Confidence 99999988766411 1111 23458999753
No 293
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=92.72 E-value=1.1 Score=45.96 Aligned_cols=106 Identities=20% Similarity=0.222 Sum_probs=62.5
Q ss_pred CCCeEEEEecchhHH-HHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCC--------CCCeEEEEccHHH----H
Q 019699 102 NPKTIFIMGGGEGST-AREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFS--------DPRLELVINDARA----E 168 (337)
Q Consensus 102 ~p~~VLiIG~G~G~~-~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~--------d~rv~v~~~D~~~----~ 168 (337)
.+.+||++|+|.-+. +..+++..+ ..|+++|.+++..+.+++. +...-..+ +.-.+..-.|..+ -
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~lG-A~V~v~d~~~~rle~a~~l-Ga~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~ 240 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSLG-AIVRAFDTRPEVKEQVQSM-GAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMEL 240 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHc-CCeEEeccccccccccccceeecCHHHHHHHHHH
Confidence 468999999986544 445555554 5699999999999998873 32100000 0011122122111 1
Q ss_pred HhhcCCceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEE
Q 019699 169 LESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFV 216 (337)
Q Consensus 169 l~~~~~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv 216 (337)
+.+.-+.+|+||.-.--|. .++..|.+++-. +.++||++++
T Consensus 241 ~~e~~~~~DIVI~TalipG--~~aP~Lit~emv-----~~MKpGsvIV 281 (511)
T TIGR00561 241 FAAQAKEVDIIITTALIPG--KPAPKLITEEMV-----DSMKAGSVIV 281 (511)
T ss_pred HHHHhCCCCEEEECcccCC--CCCCeeehHHHH-----hhCCCCCEEE
Confidence 2222366999987775444 334478887643 4688998876
No 294
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=92.69 E-value=1.6 Score=41.09 Aligned_cols=147 Identities=20% Similarity=0.278 Sum_probs=87.9
Q ss_pred eEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhc-CCceeEEEEeC
Q 019699 105 TIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR-KESYDVIIGDL 183 (337)
Q Consensus 105 ~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~-~~~yDvIi~D~ 183 (337)
+|+++-+|.|++..-+.+. +...+.++|+|+...+.-+.+|+ .+..+|..+.-... ++..|+|+.-+
T Consensus 2 ~~~dlFsG~Gg~~~g~~~a-g~~~~~a~e~~~~a~~~y~~N~~-----------~~~~~Di~~~~~~~l~~~~D~l~ggp 69 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQA-GFEVVWAVEIDPDACETYKANFP-----------EVICGDITEIDPSDLPKDVDLLIGGP 69 (335)
T ss_dssp EEEEET-TTTHHHHHHHHT-TEEEEEEEESSHHHHHHHHHHHT-----------EEEESHGGGCHHHHHHHT-SEEEEE-
T ss_pred cEEEEccCccHHHHHHHhc-CcEEEEEeecCHHHHHhhhhccc-----------ccccccccccccccccccceEEEecc
Confidence 6899999999998877765 35678899999999999888874 67788876653321 11599999887
Q ss_pred C-CCCC-CC-------CCcCCchHHHHHHHhccccCCCceEEEeCCCCCcCC--ChhHHHHHHHHHhhhcCceeEEEeec
Q 019699 184 A-DPIE-GG-------PCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFS--HTEVFSCIYNTLRQVFKYVVPYSAHI 252 (337)
Q Consensus 184 ~-dp~~-~~-------p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~--~~~~~~~i~~~l~~vF~~v~~~~~~v 252 (337)
+ .+.. .+ +-..|+ .+|++. + +.++|.-+++=|+. +... ....+..+.+.|.+.-=.+.......
T Consensus 70 PCQ~fS~ag~~~~~~d~r~~L~-~~~~~~-v-~~~~Pk~~~~ENV~--~l~~~~~~~~~~~i~~~l~~lGY~v~~~vlna 144 (335)
T PF00145_consen 70 PCQGFSIAGKRKGFDDPRNSLF-FEFLRI-V-KELKPKYFLLENVP--GLLSSKNGEVFKEILEELEELGYNVQWRVLNA 144 (335)
T ss_dssp --TTTSTTSTHHCCCCHTTSHH-HHHHHH-H-HHHS-SEEEEEEEG--GGGTGGGHHHHHHHHHHHHHTTEEEEEEEEEG
T ss_pred CCceEeccccccccccccchhh-HHHHHH-H-hhccceEEEecccc--eeeccccccccccccccccccceeehhccccH
Confidence 6 2221 11 112233 467775 4 56889887776652 2121 22457777777776521233333333
Q ss_pred cccC----CceEEEEEecCC
Q 019699 253 PSFA----DTWGWIMASDSP 268 (337)
Q Consensus 253 P~~~----~~~~~~~as~~p 268 (337)
-.|| ..-.|++|++..
T Consensus 145 ~~yGvPQ~R~R~fivg~r~~ 164 (335)
T PF00145_consen 145 ADYGVPQNRERVFIVGIRKD 164 (335)
T ss_dssp GGGTSSBE-EEEEEEEEEGG
T ss_pred hhCCCCCceeeEEEEEECCC
Confidence 3443 234588888653
No 295
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=92.57 E-value=1.1 Score=42.97 Aligned_cols=98 Identities=19% Similarity=0.293 Sum_probs=67.1
Q ss_pred CCCeEEEEecchh-HHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699 102 NPKTIFIMGGGEG-STAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (337)
Q Consensus 102 ~p~~VLiIG~G~G-~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi 180 (337)
.+.+|.+||+|-- .-+..++-- -...|+..|+|.+=++.....|. .|+++.......+-+ .-.++|++|
T Consensus 167 ~~~kv~iiGGGvvgtnaAkiA~g-lgA~Vtild~n~~rl~~ldd~f~--------~rv~~~~st~~~iee-~v~~aDlvI 236 (371)
T COG0686 167 LPAKVVVLGGGVVGTNAAKIAIG-LGADVTILDLNIDRLRQLDDLFG--------GRVHTLYSTPSNIEE-AVKKADLVI 236 (371)
T ss_pred CCccEEEECCccccchHHHHHhc-cCCeeEEEecCHHHHhhhhHhhC--------ceeEEEEcCHHHHHH-HhhhccEEE
Confidence 4678999999853 334444433 35789999999988877766553 467777777655533 336799999
Q ss_pred EeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEE
Q 019699 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFV 216 (337)
Q Consensus 181 ~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv 216 (337)
.-.--|-... ..|.++|.. +.++||++++
T Consensus 237 gaVLIpgaka--PkLvt~e~v-----k~MkpGsViv 265 (371)
T COG0686 237 GAVLIPGAKA--PKLVTREMV-----KQMKPGSVIV 265 (371)
T ss_pred EEEEecCCCC--ceehhHHHH-----HhcCCCcEEE
Confidence 8776554323 378777643 4689999886
No 296
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=92.34 E-value=0.42 Score=41.41 Aligned_cols=104 Identities=20% Similarity=0.197 Sum_probs=55.0
Q ss_pred CCCeEEEEecchhH-HHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCC-C--CCCCeEEEEccHHHH---------
Q 019699 102 NPKTIFIMGGGEGS-TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEA-F--SDPRLELVINDARAE--------- 168 (337)
Q Consensus 102 ~p~~VLiIG~G~G~-~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~-~--~d~rv~v~~~D~~~~--------- 168 (337)
.|.+|+++|+|.-+ -+.++++..+ .+++..|..++..+..+..+...-.. . ...+-. -|-..|
T Consensus 19 ~p~~vvv~G~G~vg~gA~~~~~~lG-a~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 94 (168)
T PF01262_consen 19 PPAKVVVTGAGRVGQGAAEIAKGLG-AEVVVPDERPERLRQLESLGAYFIEVDYEDHLERKD---FDKADYYEHPESYES 94 (168)
T ss_dssp -T-EEEEESTSHHHHHHHHHHHHTT--EEEEEESSHHHHHHHHHTTTEESEETTTTTTTSB----CCHHHCHHHCCHHHH
T ss_pred CCeEEEEECCCHHHHHHHHHHhHCC-CEEEeccCCHHHHHhhhcccCceEEEcccccccccc---cchhhhhHHHHHhHH
Confidence 57899999999544 3555665554 68999999999888777654321000 0 000000 111111
Q ss_pred -HhhcCCceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEE
Q 019699 169 -LESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFV 216 (337)
Q Consensus 169 -l~~~~~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv 216 (337)
+.+.-..+|+||+...-+.. .+..|+|++-.+. |+++-+++
T Consensus 95 ~f~~~i~~~d~vI~~~~~~~~--~~P~lvt~~~~~~-----m~~gsvIv 136 (168)
T PF01262_consen 95 NFAEFIAPADIVIGNGLYWGK--RAPRLVTEEMVKS-----MKPGSVIV 136 (168)
T ss_dssp HHHHHHHH-SEEEEHHHBTTS--S---SBEHHHHHT-----SSTTEEEE
T ss_pred HHHHHHhhCcEEeeecccCCC--CCCEEEEhHHhhc-----cCCCceEE
Confidence 11122569999987754432 2348899876543 55555544
No 297
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=92.31 E-value=4 Score=40.71 Aligned_cols=118 Identities=14% Similarity=0.084 Sum_probs=62.8
Q ss_pred CCCCeEEEEecchhHHH-HHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEE
Q 019699 101 PNPKTIFIMGGGEGSTA-REILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (337)
Q Consensus 101 ~~p~~VLiIG~G~G~~~-~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvI 179 (337)
...++|+++|.|.-+.. ...++.. ..+|+++|.||.-...++.. + .++. +..+.+ +..|+|
T Consensus 193 l~Gk~VvViG~G~IG~~vA~~ak~~-Ga~ViV~d~dp~r~~~A~~~-G----------~~v~--~leeal----~~aDVV 254 (406)
T TIGR00936 193 IAGKTVVVAGYGWCGKGIAMRARGM-GARVIVTEVDPIRALEAAMD-G----------FRVM--TMEEAA----KIGDIF 254 (406)
T ss_pred CCcCEEEEECCCHHHHHHHHHHhhC-cCEEEEEeCChhhHHHHHhc-C----------CEeC--CHHHHH----hcCCEE
Confidence 35789999999975443 3344444 45899999999654444321 1 1111 112223 346998
Q ss_pred EEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhhcCceeEEE
Q 019699 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYS 249 (337)
Q Consensus 180 i~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~vF~~v~~~~ 249 (337)
|.-. +. ..+++.+. ...+++|++++ |.+....-.+.+.+.+....-+.+-+++..|.
T Consensus 255 ItaT------G~-~~vI~~~~-----~~~mK~Gaili-N~G~~~~eId~~aL~~~~~~~~~~~~~v~~~~ 311 (406)
T TIGR00936 255 ITAT------GN-KDVIRGEH-----FENMKDGAIVA-NIGHFDVEIDVKALEELAVEKRNVRPQVDEYI 311 (406)
T ss_pred EECC------CC-HHHHHHHH-----HhcCCCCcEEE-EECCCCceeCHHHHHHHHhhccccccceEEEE
Confidence 7532 11 23344333 34578888765 65543211233333333333344556666665
No 298
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=92.24 E-value=0.92 Score=41.26 Aligned_cols=125 Identities=22% Similarity=0.287 Sum_probs=69.0
Q ss_pred hHHHHHHhHHHhcCCCCCeEEEEecchhHHHHH--HHhcCCCcEEEEEECChHHHHHHHhhhhhcc-C------------
Q 019699 87 IYHESLVHPALLHHPNPKTIFIMGGGEGSTARE--ILRHKTVEKVVMCDIDEEVVEFCKSYLVVNK-E------------ 151 (337)
Q Consensus 87 ~Y~e~l~~~~l~~~~~p~~VLiIG~G~G~~~~~--ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~-~------------ 151 (337)
++++.|.+ +....|-.+-+-+||+|.++.- +++......|.+-|||++++++|++++.+.. .
T Consensus 39 i~qR~l~~---l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~ 115 (246)
T PF11599_consen 39 IFQRALHY---LEGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELREL 115 (246)
T ss_dssp HHHHHHCT---SSS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHh---hcCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHH
Confidence 44555432 2235677899999999987643 4444556789999999999999999875321 0
Q ss_pred ------------------------CC-CCCCeEEEEccHHHHHh----hcCCceeEEEEeCCCC----CCC-CCCcCCch
Q 019699 152 ------------------------AF-SDPRLELVINDARAELE----SRKESYDVIIGDLADP----IEG-GPCYKLYT 197 (337)
Q Consensus 152 ------------------------~~-~d~rv~v~~~D~~~~l~----~~~~~yDvIi~D~~dp----~~~-~p~~~L~t 197 (337)
.. ......+...|..+.-. .....-|+||.|++.. |.. ++ .-=.
T Consensus 116 ~e~~~kps~~eAl~sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~--~~p~ 193 (246)
T PF11599_consen 116 YEQYGKPSHAEALESADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGS--GGPV 193 (246)
T ss_dssp HHHH--HHHHHHHHHHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS-----HHHH
T ss_pred HHHcCCchHHHHHHHHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCC--CCcH
Confidence 00 12335677777665321 2244579999999843 322 11 1123
Q ss_pred HHHHHHHhccccCCCceEEE
Q 019699 198 KSFYEFVVKPRLNPEGIFVT 217 (337)
Q Consensus 198 ~ef~~~~~~~~L~p~Gvlv~ 217 (337)
..++.. +...|.+++|+++
T Consensus 194 ~~ml~~-l~~vLp~~sVV~v 212 (246)
T PF11599_consen 194 AQMLNS-LAPVLPERSVVAV 212 (246)
T ss_dssp HHHHHH-HHCCS-TT-EEEE
T ss_pred HHHHHH-HHhhCCCCcEEEE
Confidence 568887 8999977778777
No 299
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=92.19 E-value=1.2 Score=43.49 Aligned_cols=139 Identities=16% Similarity=0.167 Sum_probs=79.8
Q ss_pred CCCCeEEEEecchhHHHHHHHhc--CC--CcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHH----H---
Q 019699 101 PNPKTIFIMGGGEGSTAREILRH--KT--VEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE----L--- 169 (337)
Q Consensus 101 ~~p~~VLiIG~G~G~~~~~ll~~--~~--~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~----l--- 169 (337)
.+..+||++++.-|+=+..+++. .. ...|++=|.|+.=....+.-... +.++.+.+...|+-.| +
T Consensus 154 ~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~----l~~~~~~v~~~~~~~~p~~~~~~~ 229 (375)
T KOG2198|consen 154 KPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKR----LPSPNLLVTNHDASLFPNIYLKDG 229 (375)
T ss_pred CCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhc----cCCcceeeecccceeccccccccC
Confidence 56689999999999877666653 22 23799999999866555443321 1245555555555332 1
Q ss_pred -hhcCCceeEEEEeCC---CCCC-CCC-------------CcCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHH
Q 019699 170 -ESRKESYDVIIGDLA---DPIE-GGP-------------CYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVF 231 (337)
Q Consensus 170 -~~~~~~yDvIi~D~~---dp~~-~~p-------------~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~ 231 (337)
......||-|++|.+ |... ..+ .-+......+.. .-+.|++||.+|-.+.+-+..-+....
T Consensus 230 ~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~r-gl~lLk~GG~lVYSTCSLnpieNEaVV 308 (375)
T KOG2198|consen 230 NDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRR-GLRLLKVGGRLVYSTCSLNPIENEAVV 308 (375)
T ss_pred chhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHH-HHHHhcCCCEEEEeccCCCchhhHHHH
Confidence 112357999999997 2110 000 001223345565 468999999998765432212333444
Q ss_pred HHHHHHHhhhcCc
Q 019699 232 SCIYNTLRQVFKY 244 (337)
Q Consensus 232 ~~i~~~l~~vF~~ 244 (337)
+.+++.+...|+-
T Consensus 309 ~~~L~~~~~~~~l 321 (375)
T KOG2198|consen 309 QEALQKVGGAVEL 321 (375)
T ss_pred HHHHHHhcCcccc
Confidence 5555444444443
No 300
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=91.90 E-value=0.95 Score=45.69 Aligned_cols=106 Identities=19% Similarity=0.269 Sum_probs=70.0
Q ss_pred CeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEEEeC
Q 019699 104 KTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDL 183 (337)
Q Consensus 104 ~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~D~ 183 (337)
.++|.+|||.-.+...+.+- +...|+.+|+++.+++....--. -..+-.++...|...-. -.++.||+||.-.
T Consensus 50 ~~~l~lGCGNS~l~e~ly~~-G~~dI~~iD~S~V~V~~m~~~~~-----~~~~~~~~~~~d~~~l~-fedESFdiVIdkG 122 (482)
T KOG2352|consen 50 FKILQLGCGNSELSEHLYKN-GFEDITNIDSSSVVVAAMQVRNA-----KERPEMQMVEMDMDQLV-FEDESFDIVIDKG 122 (482)
T ss_pred ceeEeecCCCCHHHHHHHhc-CCCCceeccccHHHHHHHHhccc-----cCCcceEEEEecchhcc-CCCcceeEEEecC
Confidence 48999999998888777764 56789999999999988765322 13466778888865432 2357899988655
Q ss_pred C-CCCCCCCCcCC---chHHHHHHHhccccCCCceEEE
Q 019699 184 A-DPIEGGPCYKL---YTKSFYEFVVKPRLNPEGIFVT 217 (337)
Q Consensus 184 ~-dp~~~~p~~~L---~t~ef~~~~~~~~L~p~Gvlv~ 217 (337)
+ |.....-...+ .-...+.. +.+.|+++|.++.
T Consensus 123 tlDal~~de~a~~~~~~v~~~~~e-Vsrvl~~~gk~~s 159 (482)
T KOG2352|consen 123 TLDALFEDEDALLNTAHVSNMLDE-VSRVLAPGGKYIS 159 (482)
T ss_pred ccccccCCchhhhhhHHhhHHHhh-HHHHhccCCEEEE
Confidence 4 21111100112 22234555 6899999998653
No 301
>PF06460 NSP13: Coronavirus NSP13; InterPro: IPR009461 This domain covers the NSP13 region of the coronavirus polyprotein. This protein has the predicted function of an mRNA cap-1 methyltransferase []. The human coronavirus 229E (HCoV-229E) replicase gene-encoded nonstructural protein 13 (nsp13) contains an N-terminal zinc-binding domain and a C-terminal superfamily 1 helicase domain []. All natural ribonucleotides and nucleotides are substrates of nsp13, with ATP, dATP, and GTP being hydrolyzed most efficiently. Using the NTPase active site, HCoV-229E nsp13 also mediates RNA 5'-triphosphatase activity, which may be involved in the capping of viral RNAs.; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0008168 methyltransferase activity, 0008233 peptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0016896 exoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2XYV_A 2XYR_A 3R24_A 2XYQ_A.
Probab=91.60 E-value=1.6 Score=40.82 Aligned_cols=154 Identities=16% Similarity=0.256 Sum_probs=72.8
Q ss_pred hhHHHHHHhHHH--hcCCCCCeEEEEecchh--H-HHHHHHhc--CCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCe
Q 019699 86 FIYHESLVHPAL--LHHPNPKTIFIMGGGEG--S-TAREILRH--KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRL 158 (337)
Q Consensus 86 ~~Y~e~l~~~~l--~~~~~p~~VLiIG~G~G--~-~~~~ll~~--~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv 158 (337)
.-|+++.-.+.- +..|...|||.+|+|+- . -+..++++ |...-++-.||++-|- +--
T Consensus 43 ~KYtQLCqYln~~tlaVP~nMrVlHlGAgSdkGvaPGt~VLrqwlP~~ailvDnDi~d~vS----------------Da~ 106 (299)
T PF06460_consen 43 AKYTQLCQYLNKTTLAVPHNMRVLHLGAGSDKGVAPGTAVLRQWLPEDAILVDNDIRDYVS----------------DAD 106 (299)
T ss_dssp HHHHHHHHHHTTS-----TT-EEEEES---TTSB-HHHHHHHHHS-TT-EEEEEESS--B-----------------SSS
T ss_pred HHHHHHHHHhccccEeeccCcEEEEecccccCCcCCchHHHHHhCCCCcEEEecchhhhcc----------------ccC
Confidence 346665443311 22477789999999853 2 23334443 3455566666644211 223
Q ss_pred EEEEccHHHHHhhcCCceeEEEEeCCCCCCCCC-CcCCchHHHHHH---HhccccCCCceEEEeCCCCCcCCChhHHHHH
Q 019699 159 ELVINDARAELESRKESYDVIIGDLADPIEGGP-CYKLYTKSFYEF---VVKPRLNPEGIFVTQAGPAGIFSHTEVFSCI 234 (337)
Q Consensus 159 ~v~~~D~~~~l~~~~~~yDvIi~D~~dp~~~~p-~~~L~t~ef~~~---~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i 234 (337)
..+.+|.+.|. .+.+||+||+|..|+....- ...--...||.. ++++.|+-||-+++...--+ | +.+
T Consensus 107 ~~~~~Dc~t~~--~~~k~DlIiSDmYd~~~k~~~~~n~~~~~fF~yl~~~i~~kLaLGGSvaiKiTE~S-w-~~~----- 177 (299)
T PF06460_consen 107 QSIVGDCRTYM--PPDKFDLIISDMYDGRTKNCDGENNSKEGFFTYLCGFIKEKLALGGSVAIKITEHS-W-NAQ----- 177 (299)
T ss_dssp EEEES-GGGEE--ESS-EEEEEE----TTS-SS-S------THHHHHHHHHHHHEEEEEEEEEEE-SSS----HH-----
T ss_pred CceeccccccC--CCCcccEEEEecccccccccccccCCccccHHHHHHHHHhhhhcCceEEEEeeccc-c-cHH-----
Confidence 56778887774 35789999999997542110 011111223332 25789999999988763221 3 232
Q ss_pred HHHHhhhcCceeEEEeeccccCCceEEEEEe
Q 019699 235 YNTLRQVFKYVVPYSAHIPSFADTWGWIMAS 265 (337)
Q Consensus 235 ~~~l~~vF~~v~~~~~~vP~~~~~~~~~~as 265 (337)
+-.|.+.|.....|.+.+-+-.. =.|+++-
T Consensus 178 Lyel~~~F~~wt~FcT~VNtSSS-EaFLigi 207 (299)
T PF06460_consen 178 LYELMGYFSWWTCFCTAVNTSSS-EAFLIGI 207 (299)
T ss_dssp HHHHHTTEEEEEEEEEGGGTTSS--EEEEEE
T ss_pred HHHHHhhcccEEEEecccCcccc-ceeEEee
Confidence 23566678888777766654322 3466664
No 302
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=91.57 E-value=2.5 Score=37.38 Aligned_cols=110 Identities=25% Similarity=0.306 Sum_probs=55.7
Q ss_pred eEEEEecchhHH--HHHHHhcCCCcEEEEEECChHHHHHHHhh-hhhccC--------CCCCCCeEEEEccHHHHHhhcC
Q 019699 105 TIFIMGGGEGST--AREILRHKTVEKVVMCDIDEEVVEFCKSY-LVVNKE--------AFSDPRLELVINDARAELESRK 173 (337)
Q Consensus 105 ~VLiIG~G~G~~--~~~ll~~~~~~~v~~VEid~~vi~~a~~~-f~~~~~--------~~~d~rv~v~~~D~~~~l~~~~ 173 (337)
+|-++|+|==++ +..+++. .-+|+++|+|++.++..++- .+.... .....|+++. .|..+.+
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~--G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t-~~~~~ai---- 74 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEK--GHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRAT-TDIEEAI---- 74 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHT--TSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEE-SEHHHHH----
T ss_pred EEEEECCCcchHHHHHHHHhC--CCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhh-hhhhhhh----
Confidence 789999994433 3444443 37899999999999887753 122110 0012344332 3444333
Q ss_pred CceeEEEEeCCCCCCC-CCCcCCchHHHHHHHhccccCCCceEEEeCCCC
Q 019699 174 ESYDVIIGDLADPIEG-GPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPA 222 (337)
Q Consensus 174 ~~yDvIi~D~~dp~~~-~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p 222 (337)
...|++|+..+.|... +.+..-+-..-.+. +.+.|+++-++++.+..|
T Consensus 75 ~~adv~~I~VpTP~~~~~~~Dls~v~~a~~~-i~~~l~~~~lvV~~STvp 123 (185)
T PF03721_consen 75 KDADVVFICVPTPSDEDGSPDLSYVESAIES-IAPVLRPGDLVVIESTVP 123 (185)
T ss_dssp HH-SEEEE----EBETTTSBETHHHHHHHHH-HHHHHCSCEEEEESSSSS
T ss_pred hccceEEEecCCCccccCCccHHHHHHHHHH-HHHHHhhcceEEEccEEE
Confidence 3478998888755421 11112222344555 578899988888887543
No 303
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=91.41 E-value=0.89 Score=40.70 Aligned_cols=35 Identities=31% Similarity=0.437 Sum_probs=24.6
Q ss_pred CCCeEEEEecch-hHHHHHHHhcCCCcEEEEEECCh
Q 019699 102 NPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDE 136 (337)
Q Consensus 102 ~p~~VLiIG~G~-G~~~~~ll~~~~~~~v~~VEid~ 136 (337)
...+||++|+|+ |+.....+...++.+++.+|-|.
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ 55 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDH 55 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCE
Confidence 457999999985 44333333345788999999883
No 304
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=91.41 E-value=0.9 Score=42.76 Aligned_cols=102 Identities=17% Similarity=0.272 Sum_probs=62.9
Q ss_pred CeEEEEecc--hhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhc------cCCCCC-------CCeEEEEccHHHH
Q 019699 104 KTIFIMGGG--EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVN------KEAFSD-------PRLELVINDARAE 168 (337)
Q Consensus 104 ~~VLiIG~G--~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~------~~~~~d-------~rv~v~~~D~~~~ 168 (337)
++|.+||+| ++.++..+++. ..+|+++|.|++.++.++++.... .+.... .+++. ..|..+-
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~--G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~~ 78 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVS--GFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSY-SLDLKAA 78 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCcHHHh
Confidence 589999998 44556666654 357999999999998877653210 000000 12322 2333222
Q ss_pred HhhcCCceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCC
Q 019699 169 LESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG 220 (337)
Q Consensus 169 l~~~~~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~ 220 (337)
+ +.-|+||.-.++.. -...++|+. +.+.++++.+++.+.+
T Consensus 79 ~----~~aD~Vi~avpe~~-------~~k~~~~~~-l~~~~~~~~il~~~tS 118 (288)
T PRK09260 79 V----ADADLVIEAVPEKL-------ELKKAVFET-ADAHAPAECYIATNTS 118 (288)
T ss_pred h----cCCCEEEEeccCCH-------HHHHHHHHH-HHhhCCCCcEEEEcCC
Confidence 3 45799998876431 123467777 6788888888878764
No 305
>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted.; PDB: 2OO3_A.
Probab=91.35 E-value=1.7 Score=40.39 Aligned_cols=122 Identities=17% Similarity=0.249 Sum_probs=70.7
Q ss_pred EEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhc---CCceeEEEEeC
Q 019699 107 FIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR---KESYDVIIGDL 183 (337)
Q Consensus 107 LiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~---~~~yDvIi~D~ 183 (337)
|..=-|+=.+++.+++. ..+..++|+-|.-.+..+++|.. +++++++..||.+-+... ..+==+|++|+
T Consensus 62 l~~YPGSP~ia~~llR~--qDrl~l~ELHp~d~~~L~~~~~~------~~~v~v~~~DG~~~l~allPP~~rRglVLIDP 133 (245)
T PF04378_consen 62 LRFYPGSPAIAARLLRE--QDRLVLFELHPQDFEALKKNFRR------DRRVRVHHRDGYEGLKALLPPPERRGLVLIDP 133 (245)
T ss_dssp --EEE-HHHHHHHHS-T--TSEEEEE--SHHHHHHHTTS--T------TS-EEEE-S-HHHHHHHH-S-TTS-EEEEE--
T ss_pred cCcCCCCHHHHHHhCCc--cceEEEEecCchHHHHHHHHhcc------CCccEEEeCchhhhhhhhCCCCCCCeEEEECC
Confidence 66777888889888874 57999999999999999888753 579999999999877652 45677999998
Q ss_pred CCCCCCCCCcCCchHHHHHHHhccccC--CCceEEEeCCCCCcCCChhHHHHHHHHHhhh-cCceeE
Q 019699 184 ADPIEGGPCYKLYTKSFYEFVVKPRLN--PEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV-FKYVVP 247 (337)
Q Consensus 184 ~dp~~~~p~~~L~t~ef~~~~~~~~L~--p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~v-F~~v~~ 247 (337)
+... + .=|. ..... +.+.++ +.|+++++- | ..+.+..+.+.+.|++. .+.+..
T Consensus 134 pYE~---~--~dy~-~v~~~-l~~a~kR~~~G~~~iWY--P--i~~~~~~~~~~~~l~~~~~~~~l~ 189 (245)
T PF04378_consen 134 PYEQ---K--DDYQ-RVVDA-LAKALKRWPTGVYAIWY--P--IKDRERVDRFLRALKALGIKKVLR 189 (245)
T ss_dssp ---S---T--THHH-HHHHH-HHHHHHH-TTSEEEEEE--E--ESSHHHHHHHHHHHHHH-SSE-EE
T ss_pred CCCC---c--hHHH-HHHHH-HHHHHHhcCCcEEEEEe--e--cccHHHHHHHHHHHHhcCCCCeEE
Confidence 6322 1 1111 11111 222232 589999885 2 44666777888888865 454433
No 306
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.33 E-value=0.26 Score=42.20 Aligned_cols=57 Identities=18% Similarity=0.267 Sum_probs=44.2
Q ss_pred HHHHHhHHHhcCCCC-CeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhh
Q 019699 89 HESLVHPALLHHPNP-KTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYL 146 (337)
Q Consensus 89 ~e~l~~~~l~~~~~p-~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f 146 (337)
.|.+.|+-.+...++ .+.++||.|+|.+....+++. ....++||++|-.+..+|-+-
T Consensus 58 teQv~nVLSll~~n~~GklvDlGSGDGRiVlaaar~g-~~~a~GvELNpwLVaysrl~a 115 (199)
T KOG4058|consen 58 TEQVENVLSLLRGNPKGKLVDLGSGDGRIVLAAARCG-LRPAVGVELNPWLVAYSRLHA 115 (199)
T ss_pred HHHHHHHHHHccCCCCCcEEeccCCCceeehhhhhhC-CCcCCceeccHHHHHHHHHHH
Confidence 566666533333444 789999999999999888874 578999999999999988653
No 307
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=91.26 E-value=1.6 Score=44.01 Aligned_cols=42 Identities=31% Similarity=0.443 Sum_probs=29.1
Q ss_pred eEEEEecchhHHHHHHHh----c---CCCcEEEEEECChHHHHH----HHhhhh
Q 019699 105 TIFIMGGGEGSTAREILR----H---KTVEKVVMCDIDEEVVEF----CKSYLV 147 (337)
Q Consensus 105 ~VLiIG~G~G~~~~~ll~----~---~~~~~v~~VEid~~vi~~----a~~~f~ 147 (337)
+|.+||+|+. .+..+.+ . .+..+|+.+|||++-++. +++++.
T Consensus 2 KI~iIGaGS~-~tp~li~~l~~~~~~l~~~ei~L~DId~~rl~~v~~l~~~~~~ 54 (437)
T cd05298 2 KIVIAGGGST-YTPGIVKSLLDRKEDFPLRELVLYDIDAERQEKVAEAVKILFK 54 (437)
T ss_pred eEEEECCcHH-HHHHHHHHHHhCcccCCCCEEEEECCCHHHHHHHHHHHHHHHH
Confidence 7899999996 5544432 2 356799999999975554 555543
No 308
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=90.95 E-value=2.7 Score=38.16 Aligned_cols=112 Identities=21% Similarity=0.180 Sum_probs=72.2
Q ss_pred HHHHHhHHHhcCCCCCeEEEEecchh----HHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEcc
Q 019699 89 HESLVHPALLHHPNPKTIFIMGGGEG----STAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVIND 164 (337)
Q Consensus 89 ~e~l~~~~l~~~~~p~~VLiIG~G~G----~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D 164 (337)
.|.+. +|..--+.+-++++.+++| +++..++.+....++++|-.|++-...+++.+.... ..+.++++++|
T Consensus 30 aEfIS--AlAAG~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~---~~~~vEfvvg~ 104 (218)
T PF07279_consen 30 AEFIS--ALAAGWNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAG---LSDVVEFVVGE 104 (218)
T ss_pred HHHHH--HHhccccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhcc---ccccceEEecC
Confidence 45443 3444456778888865543 345555555567899999999998888888775321 12457999998
Q ss_pred HH-HHHhhcCCceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEE
Q 019699 165 AR-AELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT 217 (337)
Q Consensus 165 ~~-~~l~~~~~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~ 217 (337)
.. +.+... ...|.+++|.-. .-+..++|+. ++ ++|.|.+++
T Consensus 105 ~~e~~~~~~-~~iDF~vVDc~~--------~d~~~~vl~~-~~--~~~~GaVVV 146 (218)
T PF07279_consen 105 APEEVMPGL-KGIDFVVVDCKR--------EDFAARVLRA-AK--LSPRGAVVV 146 (218)
T ss_pred CHHHHHhhc-cCCCEEEEeCCc--------hhHHHHHHHH-hc--cCCCceEEE
Confidence 54 566554 579999999752 1123466665 33 777775544
No 309
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=90.86 E-value=0.055 Score=48.77 Aligned_cols=94 Identities=19% Similarity=0.276 Sum_probs=61.7
Q ss_pred CCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEE
Q 019699 100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (337)
Q Consensus 100 ~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvI 179 (337)
...|.++|+||+|+|-+...+.-++ ++|.+-|++..|....++. +.+++- ..+|++ ++-+||+|
T Consensus 110 ~~~~~~lLDlGAGdGeit~~m~p~f--eevyATElS~tMr~rL~kk-----------~ynVl~--~~ew~~-t~~k~dli 173 (288)
T KOG3987|consen 110 GQEPVTLLDLGAGDGEITLRMAPTF--EEVYATELSWTMRDRLKKK-----------NYNVLT--EIEWLQ-TDVKLDLI 173 (288)
T ss_pred CCCCeeEEeccCCCcchhhhhcchH--HHHHHHHhhHHHHHHHhhc-----------CCceee--ehhhhh-cCceeehH
Confidence 3467999999999999998887664 6788999999988766542 233332 245553 45679999
Q ss_pred EE-eCCCCCCCCCCcCCchHHHHHHHhccccCC-CceEEE
Q 019699 180 IG-DLADPIEGGPCYKLYTKSFYEFVVKPRLNP-EGIFVT 217 (337)
Q Consensus 180 i~-D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p-~Gvlv~ 217 (337)
.+ +.-|-.. .| -..++. +..+|+| +|.+++
T Consensus 174 ~clNlLDRc~-~p------~kLL~D-i~~vl~psngrviv 205 (288)
T KOG3987|consen 174 LCLNLLDRCF-DP------FKLLED-IHLVLAPSNGRVIV 205 (288)
T ss_pred HHHHHHHhhc-Ch------HHHHHH-HHHHhccCCCcEEE
Confidence 65 2222110 22 134555 6788988 886554
No 310
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=90.86 E-value=0.97 Score=43.92 Aligned_cols=35 Identities=29% Similarity=0.506 Sum_probs=24.9
Q ss_pred CCCeEEEEecch-hHHHHHHHhcCCCcEEEEEECCh
Q 019699 102 NPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDE 136 (337)
Q Consensus 102 ~p~~VLiIG~G~-G~~~~~ll~~~~~~~v~~VEid~ 136 (337)
..++||+||+|+ |+.....+...++.+++.||-|.
T Consensus 23 ~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 23 REKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 457899999984 33333333445788999999985
No 311
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=90.78 E-value=3.8 Score=40.88 Aligned_cols=103 Identities=18% Similarity=0.244 Sum_probs=57.9
Q ss_pred CeEEEEecchhH--HHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhh----------
Q 019699 104 KTIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES---------- 171 (337)
Q Consensus 104 ~~VLiIG~G~G~--~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~---------- 171 (337)
++|.+||+|--+ ++..++++ .-+|+++|+|++.++..+.-. ..+...+..+.+++
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~--G~~V~~~D~~~~~v~~l~~g~-----------~~~~e~~l~~~l~~~~~~g~l~~~ 70 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASR--QKQVIGVDINQHAVDTINRGE-----------IHIVEPDLDMVVKTAVEGGYLRAT 70 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhC--CCEEEEEeCCHHHHHHHHCCC-----------CCcCCCCHHHHHHHHhhcCceeee
Confidence 589999999443 34445554 368999999999988643311 00111111111110
Q ss_pred -cCCceeEEEEeCCCCCCCCCCcCCc-hHHHHHHHhccccCCCceEEEeCC
Q 019699 172 -RKESYDVIIGDLADPIEGGPCYKLY-TKSFYEFVVKPRLNPEGIFVTQAG 220 (337)
Q Consensus 172 -~~~~yDvIi~D~~dp~~~~p~~~L~-t~ef~~~~~~~~L~p~Gvlv~~~~ 220 (337)
..+.-|+||+..+.|........+. -.+..+. +...|++|-+++..+.
T Consensus 71 ~~~~~aDvvii~vptp~~~~~~~dl~~v~~~~~~-i~~~l~~g~iVI~~ST 120 (415)
T PRK11064 71 TTPEPADAFLIAVPTPFKGDHEPDLTYVEAAAKS-IAPVLKKGDLVILEST 120 (415)
T ss_pred cccccCCEEEEEcCCCCCCCCCcChHHHHHHHHH-HHHhCCCCCEEEEeCC
Confidence 0135799999998663211111222 2334565 6778888777776664
No 312
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=90.75 E-value=5.9 Score=40.36 Aligned_cols=141 Identities=17% Similarity=0.170 Sum_probs=71.3
Q ss_pred CeEEEEecchhHHHHH--HHhcCCCcEEEEEECChHHHHHHHhhhh-hccCCCC-------CCCeEEEEccHHHHHhhcC
Q 019699 104 KTIFIMGGGEGSTARE--ILRHKTVEKVVMCDIDEEVVEFCKSYLV-VNKEAFS-------DPRLELVINDARAELESRK 173 (337)
Q Consensus 104 ~~VLiIG~G~G~~~~~--ll~~~~~~~v~~VEid~~vi~~a~~~f~-~~~~~~~-------d~rv~v~~~D~~~~l~~~~ 173 (337)
.+|.+||+|-.+++.. ++++....+|++||+|++.++..++-.. .....++ ..++++ ..|..+-+
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~-t~~~~~~i---- 76 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFF-STDVEKHV---- 76 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEE-EcCHHHHH----
Confidence 3699999997766544 3333224679999999999998765321 1100000 011111 11211111
Q ss_pred CceeEEEEeCCCCCCC-C-----CCcCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhhcCceeE
Q 019699 174 ESYDVIIGDLADPIEG-G-----PCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVP 247 (337)
Q Consensus 174 ~~yDvIi~D~~dp~~~-~-----p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~vF~~v~~ 247 (337)
..-|+||+..+.|... + .+..-+-.+..+. +.+.|+++-+++..+..| ....+ .+.+.+.+.-+....
T Consensus 77 ~~advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~-i~~~l~~~~lVv~~STvp--~Gtt~---~~~~~l~~~~~g~~f 150 (473)
T PLN02353 77 AEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARM-IADVSKSDKIVVEKSTVP--VKTAE---AIEKILTHNSKGINF 150 (473)
T ss_pred hcCCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHH-HHhhCCCCcEEEEeCCCC--CChHH---HHHHHHHhhCCCCCe
Confidence 3478888877655421 1 1111122344455 567888777777776543 22222 333444432222223
Q ss_pred EEeecccc
Q 019699 248 YSAHIPSF 255 (337)
Q Consensus 248 ~~~~vP~~ 255 (337)
+.++-|.+
T Consensus 151 ~v~~~PEr 158 (473)
T PLN02353 151 QILSNPEF 158 (473)
T ss_pred EEEECCCc
Confidence 34556666
No 313
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=90.57 E-value=0.34 Score=41.71 Aligned_cols=77 Identities=16% Similarity=0.173 Sum_probs=46.4
Q ss_pred HHhHHHhcCCCCCeEEEEecchhHH--HHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHH
Q 019699 92 LVHPALLHHPNPKTIFIMGGGEGST--AREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAEL 169 (337)
Q Consensus 92 l~~~~l~~~~~p~~VLiIG~G~G~~--~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l 169 (337)
|.+.|++..-+.++||+||||.=+. ++.+++. ..+|++| +|++.+..++. +.+++.. +.|-
T Consensus 2 ~~~~P~~l~l~~~~vlVvGGG~va~rka~~Ll~~--ga~V~VI--sp~~~~~l~~l----------~~i~~~~---~~~~ 64 (157)
T PRK06719 2 YNMYPLMFNLHNKVVVIIGGGKIAYRKASGLKDT--GAFVTVV--SPEICKEMKEL----------PYITWKQ---KTFS 64 (157)
T ss_pred CcccceEEEcCCCEEEEECCCHHHHHHHHHHHhC--CCEEEEE--cCccCHHHHhc----------cCcEEEe---cccC
Confidence 4457888778899999999997555 4455553 4688888 45544333321 1333332 2232
Q ss_pred hhcCCceeEEEEeCCC
Q 019699 170 ESRKESYDVIIGDLAD 185 (337)
Q Consensus 170 ~~~~~~yDvIi~D~~d 185 (337)
+..-..+|+|+.-..+
T Consensus 65 ~~dl~~a~lViaaT~d 80 (157)
T PRK06719 65 NDDIKDAHLIYAATNQ 80 (157)
T ss_pred hhcCCCceEEEECCCC
Confidence 2223668999986544
No 314
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=90.57 E-value=2.6 Score=33.45 Aligned_cols=91 Identities=25% Similarity=0.248 Sum_probs=56.4
Q ss_pred EEEEecchhH--HHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHH--HHhhc-CCceeEEE
Q 019699 106 IFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA--ELESR-KESYDVII 180 (337)
Q Consensus 106 VLiIG~G~G~--~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~--~l~~~-~~~yDvIi 180 (337)
|+++|+|.-+ +++.+.+ ...++++||.|++.++.+++. .+.++.+|+.+ .+++. -++.|.|+
T Consensus 1 vvI~G~g~~~~~i~~~L~~--~~~~vvvid~d~~~~~~~~~~-----------~~~~i~gd~~~~~~l~~a~i~~a~~vv 67 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKE--GGIDVVVIDRDPERVEELREE-----------GVEVIYGDATDPEVLERAGIEKADAVV 67 (116)
T ss_dssp EEEES-SHHHHHHHHHHHH--TTSEEEEEESSHHHHHHHHHT-----------TSEEEES-TTSHHHHHHTTGGCESEEE
T ss_pred eEEEcCCHHHHHHHHHHHh--CCCEEEEEECCcHHHHHHHhc-----------ccccccccchhhhHHhhcCccccCEEE
Confidence 5788887432 2333333 235899999999999888763 26788899864 35543 37799999
Q ss_pred EeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (337)
Q Consensus 181 ~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~ 219 (337)
+...+.. ..+ ..-. ..+.+.|...+++..
T Consensus 68 ~~~~~d~-----~n~---~~~~--~~r~~~~~~~ii~~~ 96 (116)
T PF02254_consen 68 ILTDDDE-----ENL---LIAL--LARELNPDIRIIARV 96 (116)
T ss_dssp EESSSHH-----HHH---HHHH--HHHHHTTTSEEEEEE
T ss_pred EccCCHH-----HHH---HHHH--HHHHHCCCCeEEEEE
Confidence 8876422 111 1111 245677888777775
No 315
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=90.50 E-value=0.58 Score=40.00 Aligned_cols=112 Identities=19% Similarity=0.217 Sum_probs=59.0
Q ss_pred HHhHHHhcCCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhh
Q 019699 92 LVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES 171 (337)
Q Consensus 92 l~~~~l~~~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~ 171 (337)
|-++.-....-+.-||++|.|.|-+=-.+....+..+|.+.|-.- . .| + .+. -|.-.++.||+++-+..
T Consensus 18 L~~a~~~v~~~~G~VlElGLGNGRTydHLRe~~p~R~I~vfDR~l---~---~h-p--~~~--P~~~~~ilGdi~~tl~~ 86 (160)
T PF12692_consen 18 LNWAAAQVAGLPGPVLELGLGNGRTYDHLREIFPDRRIYVFDRAL---A---CH-P--SST--PPEEDLILGDIRETLPA 86 (160)
T ss_dssp HHHHHHHTTT--S-EEEE--TTSHHHHHHHHH--SS-EEEEESS--------S--G--GG-----GGGEEES-HHHHHHH
T ss_pred HHHHHHHhcCCCCceEEeccCCCccHHHHHHhCCCCeEEEEeeec---c---cC-C--CCC--CchHheeeccHHHHhHH
Confidence 334444444556889999999999988888888889999998621 1 11 1 110 13346899999987765
Q ss_pred ---cCCceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEE
Q 019699 172 ---RKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT 217 (337)
Q Consensus 172 ---~~~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~ 217 (337)
.+.+--++=.|.-... +....-+...+.-++..+|++||+++-
T Consensus 87 ~~~~g~~a~laHaD~G~g~---~~~d~a~a~~lspli~~~la~gGi~vS 132 (160)
T PF12692_consen 87 LARFGAGAALAHADIGTGD---KEKDDATAAWLSPLIAPVLAPGGIMVS 132 (160)
T ss_dssp HHHH-S-EEEEEE----S----HHHHHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred HHhcCCceEEEEeecCCCC---cchhHHHHHhhhHHHHHHhcCCcEEEe
Confidence 3445556666664321 112222333444446899999999874
No 316
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=90.44 E-value=0.67 Score=41.07 Aligned_cols=44 Identities=23% Similarity=0.199 Sum_probs=35.2
Q ss_pred cCCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHh
Q 019699 99 HHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKS 144 (337)
Q Consensus 99 ~~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~ 144 (337)
...+..-|||--+|+|+++.++.+. ..+..++|++++.+++|++
T Consensus 188 ~t~~gdiVlDpF~GSGTT~~aa~~l--~R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 188 STNPGDIVLDPFAGSGTTAVAAEEL--GRRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp HS-TT-EEEETT-TTTHHHHHHHHT--T-EEEEEESSHHHHHHHHH
T ss_pred hhccceeeehhhhccChHHHHHHHc--CCeEEEEeCCHHHHHHhcC
Confidence 3466788999999999999998886 4789999999999999975
No 317
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=90.44 E-value=0.37 Score=46.81 Aligned_cols=107 Identities=20% Similarity=0.199 Sum_probs=61.0
Q ss_pred CCCeEEEEecchhHHHHHHHhc-CCCcEEEEEECChHHHHHHHh---hhhhccCCCCCCCeEEEEccHHHHHhhcCCcee
Q 019699 102 NPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKS---YLVVNKEAFSDPRLELVINDARAELESRKESYD 177 (337)
Q Consensus 102 ~p~~VLiIG~G~G~~~~~ll~~-~~~~~v~~VEid~~vi~~a~~---~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yD 177 (337)
.|+++|++|.|.|+-+.++-.- +...+++++|.+|.+-++.-. +..... .+-|..=+..|- .-+. ..+.|+
T Consensus 113 apqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~---td~r~s~vt~dR-l~lp-~ad~yt 187 (484)
T COG5459 113 APQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEK---TDWRASDVTEDR-LSLP-AADLYT 187 (484)
T ss_pred CcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhccccc---CCCCCCccchhc-cCCC-ccceee
Confidence 5899999999999877665553 556789999999986555433 221111 112222222231 1111 236788
Q ss_pred EEEEeC-CCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699 178 VIIGDL-ADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (337)
Q Consensus 178 vIi~D~-~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~ 218 (337)
+||+-- --|. +-...++ ...+. +...++|||.+|+-
T Consensus 188 l~i~~~eLl~d--~~ek~i~--~~ie~-lw~l~~~gg~lViv 224 (484)
T COG5459 188 LAIVLDELLPD--GNEKPIQ--VNIER-LWNLLAPGGHLVIV 224 (484)
T ss_pred hhhhhhhhccc--cCcchHH--HHHHH-HHHhccCCCeEEEE
Confidence 877632 1222 1112232 25566 67889999988764
No 318
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=90.14 E-value=1.1 Score=42.10 Aligned_cols=102 Identities=21% Similarity=0.305 Sum_probs=64.0
Q ss_pred CeEEEEecc--hhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhc------cCCCCC-------CCeEEEEccHHHH
Q 019699 104 KTIFIMGGG--EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVN------KEAFSD-------PRLELVINDARAE 168 (337)
Q Consensus 104 ~~VLiIG~G--~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~------~~~~~d-------~rv~v~~~D~~~~ 168 (337)
++|.+||+| ++.++..++++. .+|+++|++++.++.+++..... .+.+.. .++++ ..|. +-
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g--~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~-~~~~-~~ 79 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAG--YDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITG-TTDL-DD 79 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCC--CceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCCH-HH
Confidence 579999999 667777777652 48999999999987655432110 010100 13432 2332 21
Q ss_pred HhhcCCceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCC
Q 019699 169 LESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGP 221 (337)
Q Consensus 169 l~~~~~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~ 221 (337)
+ +..|+||.-.+.. .....++|+. +.+.++++.+++.++.+
T Consensus 80 ~----~~aDlVi~av~e~-------~~~k~~~~~~-l~~~~~~~~il~s~ts~ 120 (282)
T PRK05808 80 L----KDADLVIEAATEN-------MDLKKKIFAQ-LDEIAKPEAILATNTSS 120 (282)
T ss_pred h----ccCCeeeeccccc-------HHHHHHHHHH-HHhhCCCCcEEEECCCC
Confidence 2 4579999876532 1123578888 78899999988777643
No 319
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=89.84 E-value=1.3 Score=43.19 Aligned_cols=35 Identities=26% Similarity=0.330 Sum_probs=25.8
Q ss_pred CCCeEEEEecch-hHHHHHHHhcCCCcEEEEEECCh
Q 019699 102 NPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDE 136 (337)
Q Consensus 102 ~p~~VLiIG~G~-G~~~~~ll~~~~~~~v~~VEid~ 136 (337)
...+||++|+|+ |+.....+...++.+++.||-|.
T Consensus 27 ~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ 62 (355)
T PRK05597 27 FDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDT 62 (355)
T ss_pred hCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 457999999985 44444444456789999999886
No 320
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=89.66 E-value=4 Score=40.96 Aligned_cols=42 Identities=33% Similarity=0.615 Sum_probs=29.2
Q ss_pred eEEEEecchhHHHHHHHh----c---CCCcEEEEEECChHHHH----HHHhhhh
Q 019699 105 TIFIMGGGEGSTAREILR----H---KTVEKVVMCDIDEEVVE----FCKSYLV 147 (337)
Q Consensus 105 ~VLiIG~G~G~~~~~ll~----~---~~~~~v~~VEid~~vi~----~a~~~f~ 147 (337)
+|.+||+|+. .+..+.+ . .+..+|..+|||++-++ +|++.+.
T Consensus 2 KI~iIGgGS~-~tp~li~~l~~~~~~l~~~ei~L~Did~~Rl~~v~~l~~~~~~ 54 (425)
T cd05197 2 KIAIIGGGSS-FTPELVSGLLKTPEELPISEVTLYDIDEERLDIILTIAKRYVE 54 (425)
T ss_pred EEEEECCchH-hHHHHHHHHHcChhhCCCCEEEEEcCCHHHHHHHHHHHHHHHH
Confidence 7899999996 5544432 2 35689999999996554 4555544
No 321
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=89.58 E-value=1.1 Score=42.54 Aligned_cols=75 Identities=27% Similarity=0.445 Sum_probs=43.5
Q ss_pred EEEEecchhHHHHHHHhc---CCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEE----EEccHHHH--Hhhc--CC
Q 019699 106 IFIMGGGEGSTAREILRH---KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLEL----VINDARAE--LESR--KE 174 (337)
Q Consensus 106 VLiIG~G~G~~~~~ll~~---~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v----~~~D~~~~--l~~~--~~ 174 (337)
||+-|+ +|+++.++.++ ....++.++|.|+.-+-..++.+... +.++++++ +.+|.++. +... ..
T Consensus 1 VLVTGa-~GSIGseL~rql~~~~p~~lil~d~~E~~l~~l~~~l~~~---~~~~~v~~~~~~vigDvrd~~~l~~~~~~~ 76 (293)
T PF02719_consen 1 VLVTGA-GGSIGSELVRQLLRYGPKKLILFDRDENKLYELERELRSR---FPDPKVRFEIVPVIGDVRDKERLNRIFEEY 76 (293)
T ss_dssp EEEETT-TSHHHHHHHHHHHCCB-SEEEEEES-HHHHHHHHHHCHHH---C--TTCEEEEE--CTSCCHHHHHHHHTT--
T ss_pred CEEEcc-ccHHHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHHHhhc---ccccCcccccCceeecccCHHHHHHHHhhc
Confidence 566665 57777776654 34478999999998877766665321 12456654 58888754 3332 24
Q ss_pred ceeEEEEeCC
Q 019699 175 SYDVIIGDLA 184 (337)
Q Consensus 175 ~yDvIi~D~~ 184 (337)
+.|+||.-+.
T Consensus 77 ~pdiVfHaAA 86 (293)
T PF02719_consen 77 KPDIVFHAAA 86 (293)
T ss_dssp T-SEEEE---
T ss_pred CCCEEEEChh
Confidence 8999999886
No 322
>PLN02494 adenosylhomocysteinase
Probab=89.55 E-value=7.9 Score=39.36 Aligned_cols=118 Identities=8% Similarity=0.036 Sum_probs=62.4
Q ss_pred CCCeEEEEecchhHHH-HHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699 102 NPKTIFIMGGGEGSTA-REILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (337)
Q Consensus 102 ~p~~VLiIG~G~G~~~-~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi 180 (337)
..++|+++|.|.=+.. ...++..+ .+|+++|+|+.-...+... . +.+. +..+.+ +..|+|+
T Consensus 253 aGKtVvViGyG~IGr~vA~~aka~G-a~VIV~e~dp~r~~eA~~~-G----------~~vv--~leEal----~~ADVVI 314 (477)
T PLN02494 253 AGKVAVICGYGDVGKGCAAAMKAAG-ARVIVTEIDPICALQALME-G----------YQVL--TLEDVV----SEADIFV 314 (477)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC-CEEEEEeCCchhhHHHHhc-C----------Ceec--cHHHHH----hhCCEEE
Confidence 4789999999964432 22333344 5899999999654344332 0 1111 222333 3479998
Q ss_pred EeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHH-HHHhhhcCceeEEEe
Q 019699 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIY-NTLRQVFKYVVPYSA 250 (337)
Q Consensus 181 ~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~-~~l~~vF~~v~~~~~ 250 (337)
.... - .++...+. -+.|+++|+++ |.+.++.-.+...+.+.- -.-+.+.|++..|..
T Consensus 315 ~tTG------t-~~vI~~e~-----L~~MK~GAiLi-NvGr~~~eID~~aL~~~~~l~~~~i~~~vd~y~~ 372 (477)
T PLN02494 315 TTTG------N-KDIIMVDH-----MRKMKNNAIVC-NIGHFDNEIDMLGLETYPGVKRITIKPQTDRWVF 372 (477)
T ss_pred ECCC------C-ccchHHHH-----HhcCCCCCEEE-EcCCCCCccCHHHHhhccccceeccCCCceEEEc
Confidence 6321 1 23433333 34688888876 665432122333332220 112356688777754
No 323
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=89.47 E-value=0.4 Score=41.81 Aligned_cols=110 Identities=20% Similarity=0.296 Sum_probs=65.1
Q ss_pred EEEecchhHHHHHHHhcCC-CcEEEEEECChHHHHHHHhhhh--hccCCCCCCCeEEEEc-cHHHHHhh---cCCceeEE
Q 019699 107 FIMGGGEGSTAREILRHKT-VEKVVMCDIDEEVVEFCKSYLV--VNKEAFSDPRLELVIN-DARAELES---RKESYDVI 179 (337)
Q Consensus 107 LiIG~G~G~~~~~ll~~~~-~~~v~~VEid~~vi~~a~~~f~--~~~~~~~d~rv~v~~~-D~~~~l~~---~~~~yDvI 179 (337)
|.||=|+-+.+..++++.+ ..+|++--.|.+ -++.++|-. .+-..+....++++.+ ||.+.-+. ..++||.|
T Consensus 1 LlvGeGdfSFs~sL~~~~~~~~~l~ATs~ds~-~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrI 79 (166)
T PF10354_consen 1 LLVGEGDFSFSLSLARAFGSATNLVATSYDSE-EELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRI 79 (166)
T ss_pred CeeeccchHHHHHHHHHcCCCCeEEEeecCch-HHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEE
Confidence 6799999999999998755 556665555554 333333321 1111234455655543 54332221 24789999
Q ss_pred EEeCCCCCCC---CCC----cCCchHHHHHHHhccccCCCceEEEe
Q 019699 180 IGDLADPIEG---GPC----YKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (337)
Q Consensus 180 i~D~~dp~~~---~p~----~~L~t~ef~~~~~~~~L~p~Gvlv~~ 218 (337)
|-+-|..... +.. ..-.-..||+. ++++|+++|.+.+-
T Consensus 80 iFNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~S-a~~~L~~~G~IhVT 124 (166)
T PF10354_consen 80 IFNFPHVGGGSEDGKRNIRLNRELLRGFFKS-ASQLLKPDGEIHVT 124 (166)
T ss_pred EEeCCCCCCCccchhHHHHHHHHHHHHHHHH-HHHhcCCCCEEEEE
Confidence 9998853200 000 01122679999 89999999966554
No 324
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=89.25 E-value=1.8 Score=40.94 Aligned_cols=86 Identities=20% Similarity=0.293 Sum_probs=53.8
Q ss_pred CCCeEEEEecc-hhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699 102 NPKTIFIMGGG-EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (337)
Q Consensus 102 ~p~~VLiIG~G-~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi 180 (337)
..++||++|+| -|.++..+++..+...|.+++.+++-++.|+++... ++. + .....+|+||
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~~i------~~~---------~---~~~~g~Dvvi 205 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGYEVL------DPE---------K---DPRRDYRAIY 205 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhcccc------Chh---------h---ccCCCCCEEE
Confidence 45789999865 455566777777766788889988877776653111 110 0 0134689887
Q ss_pred EeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (337)
Q Consensus 181 ~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~ 218 (337)
|... ++ ..++. +-+.|+++|.+++-
T Consensus 206 -d~~G----~~-------~~~~~-~~~~l~~~G~iv~~ 230 (308)
T TIGR01202 206 -DASG----DP-------SLIDT-LVRRLAKGGEIVLA 230 (308)
T ss_pred -ECCC----CH-------HHHHH-HHHhhhcCcEEEEE
Confidence 5431 11 22344 45789999998854
No 325
>PRK07340 ornithine cyclodeaminase; Validated
Probab=88.96 E-value=15 Score=34.92 Aligned_cols=113 Identities=13% Similarity=0.159 Sum_probs=65.7
Q ss_pred eEEEEEeCCCceE-EEEcCccccccCChhhHHHHHHhHHHhcCCCCCeEEEEecchhHH--HHHHHhcCCCcEEEEEECC
Q 019699 59 DIALLDTKPFGKA-LVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGST--AREILRHKTVEKVVMCDID 135 (337)
Q Consensus 59 ~I~V~~~~~~G~~-L~lDG~~q~~~~de~~Y~e~l~~~~l~~~~~p~~VLiIG~G~G~~--~~~ll~~~~~~~v~~VEid 135 (337)
.+.+++... |+. .++||...+.-+..-. -.++ .-++..++.+++++||+|.=+- +..+....+..+|.+.+.+
T Consensus 84 ~i~l~d~~t-G~p~a~~d~~~lT~~RTaA~--sala-~~~La~~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~ 159 (304)
T PRK07340 84 EVVVADAAT-GERLFLLDGPTVTGRRTAAV--SLLA-ARTLAPAPPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRT 159 (304)
T ss_pred EEEEEECCC-CcEEEEEcChhHHHHHHHHH--HHHH-HHHhCCCCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCC
Confidence 566666655 543 4678877665443211 1111 1223446789999999975432 3333333566899999999
Q ss_pred hHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEEEeCCCC
Q 019699 136 EEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADP 186 (337)
Q Consensus 136 ~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~D~~dp 186 (337)
++-.+...+.+... .+.+...|..+-+ ...|+|++-.+.+
T Consensus 160 ~~~a~~~a~~~~~~-------~~~~~~~~~~~av----~~aDiVitaT~s~ 199 (304)
T PRK07340 160 AASAAAFCAHARAL-------GPTAEPLDGEAIP----EAVDLVVTATTSR 199 (304)
T ss_pred HHHHHHHHHHHHhc-------CCeeEECCHHHHh----hcCCEEEEccCCC
Confidence 87665544443311 1233345655555 4699999887643
No 326
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=88.81 E-value=3.2 Score=39.41 Aligned_cols=95 Identities=22% Similarity=0.231 Sum_probs=58.4
Q ss_pred CeEEEEec--chhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhh-cCCceeEEE
Q 019699 104 KTIFIMGG--GEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDVII 180 (337)
Q Consensus 104 ~~VLiIG~--G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~-~~~~yDvIi 180 (337)
.+||+.|+ |-|..+..++++.+..+|.++.-+++-.+.+++.++.. .-+.....|..+.+++ ..+.+|+|+
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~lGa~------~vi~~~~~~~~~~i~~~~~~gvd~vi 229 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSELGFD------AAINYKTDNVAERLRELCPEGVDVYF 229 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhcCCc------EEEECCCCCHHHHHHHHCCCCceEEE
Confidence 79999985 56677778888776447999998888777777644321 1111111233444433 235699988
Q ss_pred EeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (337)
Q Consensus 181 ~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~ 218 (337)
|... ++ . ++. +.+.|+++|.++.-
T Consensus 230 -d~~g----~~-------~-~~~-~~~~l~~~G~iv~~ 253 (345)
T cd08293 230 -DNVG----GE-------I-SDT-VISQMNENSHIILC 253 (345)
T ss_pred -ECCC----cH-------H-HHH-HHHHhccCCEEEEE
Confidence 5431 11 1 233 45789999998754
No 327
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=88.77 E-value=1.3 Score=44.06 Aligned_cols=69 Identities=19% Similarity=0.220 Sum_probs=57.0
Q ss_pred CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcC
Q 019699 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRK 173 (337)
Q Consensus 101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~ 173 (337)
..+.-|.++-+|.|-++.-+++. .++|++-|++|++++..+.+.+.+. .+..+++++..||..|+++..
T Consensus 248 k~gevv~D~FaGvGPfa~Pa~kK--~crV~aNDLNpesik~Lk~ni~lNk--v~~~~iei~Nmda~~Flr~e~ 316 (495)
T KOG2078|consen 248 KPGEVVCDVFAGVGPFALPAAKK--GCRVYANDLNPESIKWLKANIKLNK--VDPSAIEIFNMDAKDFLRQEP 316 (495)
T ss_pred CCcchhhhhhcCcCccccchhhc--CcEEEecCCCHHHHHHHHHhccccc--cchhheeeecccHHHHhhcCC
Confidence 45667888999999988888775 3899999999999999999988764 233459999999999997443
No 328
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=88.54 E-value=2.7 Score=40.36 Aligned_cols=94 Identities=19% Similarity=0.311 Sum_probs=54.9
Q ss_pred CCCeEEEEecch-hHHHHHHHhcCCCcEEEEEEC---ChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCcee
Q 019699 102 NPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDI---DEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYD 177 (337)
Q Consensus 102 ~p~~VLiIG~G~-G~~~~~ll~~~~~~~v~~VEi---d~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yD 177 (337)
...+||++|+|. |.++..+++..+. +|++++. +++-.+.++++-... -...+ .|..+ .+ ....+|
T Consensus 172 ~g~~vlI~G~G~vG~~a~q~ak~~G~-~vi~~~~~~~~~~~~~~~~~~Ga~~-v~~~~-------~~~~~-~~-~~~~~d 240 (355)
T cd08230 172 NPRRALVLGAGPIGLLAALLLRLRGF-EVYVLNRRDPPDPKADIVEELGATY-VNSSK-------TPVAE-VK-LVGEFD 240 (355)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEecCCCCHHHHHHHHHcCCEE-ecCCc-------cchhh-hh-hcCCCC
Confidence 568999998764 4456667777654 7998886 677788887642111 00001 11111 11 235699
Q ss_pred EEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699 178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (337)
Q Consensus 178 vIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~ 219 (337)
+||--... + ..+.. ..+.|+++|.+++-.
T Consensus 241 ~vid~~g~-----~-------~~~~~-~~~~l~~~G~~v~~G 269 (355)
T cd08230 241 LIIEATGV-----P-------PLAFE-ALPALAPNGVVILFG 269 (355)
T ss_pred EEEECcCC-----H-------HHHHH-HHHHccCCcEEEEEe
Confidence 88744321 1 23344 457899999887643
No 329
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=88.52 E-value=2.2 Score=38.56 Aligned_cols=34 Identities=26% Similarity=0.383 Sum_probs=24.7
Q ss_pred CCCeEEEEecch-hHHHHHHHhcCCCcEEEEEECC
Q 019699 102 NPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDID 135 (337)
Q Consensus 102 ~p~~VLiIG~G~-G~~~~~ll~~~~~~~v~~VEid 135 (337)
...+|++||+|+ |+.....+...++.+++.+|-|
T Consensus 27 ~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D 61 (212)
T PRK08644 27 KKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD 61 (212)
T ss_pred hCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 457899999884 4443333444578899999999
No 330
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=88.43 E-value=4.4 Score=37.61 Aligned_cols=96 Identities=17% Similarity=0.223 Sum_probs=56.4
Q ss_pred CCCeEEEEecch-hHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhh--cCCceeE
Q 019699 102 NPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES--RKESYDV 178 (337)
Q Consensus 102 ~p~~VLiIG~G~-G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~--~~~~yDv 178 (337)
+..+||++|+|. |.++..+++..+..+|++++.+++-.+.++++-... .+ ++ .+..+.+.+ ....+|+
T Consensus 120 ~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~--~i-~~------~~~~~~~~~~~~~~g~d~ 190 (280)
T TIGR03366 120 KGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGATA--LA-EP------EVLAERQGGLQNGRGVDV 190 (280)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCcE--ec-Cc------hhhHHHHHHHhCCCCCCE
Confidence 467999998753 334556667666666999999999888888752110 01 11 111122222 1346998
Q ss_pred EEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (337)
Q Consensus 179 Ii~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~ 219 (337)
|| |... .+ .-++. +.+.|+++|.++.-.
T Consensus 191 vi-d~~G----~~-------~~~~~-~~~~l~~~G~iv~~G 218 (280)
T TIGR03366 191 AL-EFSG----AT-------AAVRA-CLESLDVGGTAVLAG 218 (280)
T ss_pred EE-ECCC----Ch-------HHHHH-HHHHhcCCCEEEEec
Confidence 87 4331 11 22333 457899999988654
No 331
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=88.36 E-value=3 Score=40.22 Aligned_cols=99 Identities=18% Similarity=0.249 Sum_probs=59.7
Q ss_pred CCCCeEEEEecch-hHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhc-C-Ccee
Q 019699 101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR-K-ESYD 177 (337)
Q Consensus 101 ~~p~~VLiIG~G~-G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~-~-~~yD 177 (337)
....+||+.|+|. |..+..+++..+..+|++++.+++-.+.++++ +. +.-+.....|..+.+.+. . ..+|
T Consensus 175 ~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~-Ga------~~~i~~~~~~~~~~i~~~~~~~g~d 247 (358)
T TIGR03451 175 KRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREF-GA------THTVNSSGTDPVEAIRALTGGFGAD 247 (358)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc-CC------ceEEcCCCcCHHHHHHHHhCCCCCC
Confidence 4568999998653 33456667766656799999999999988764 21 111111123444444432 2 4589
Q ss_pred EEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699 178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (337)
Q Consensus 178 vIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~ 219 (337)
+|+ |... ++ +.++. +.+.|+++|.+++-.
T Consensus 248 ~vi-d~~g----~~-------~~~~~-~~~~~~~~G~iv~~G 276 (358)
T TIGR03451 248 VVI-DAVG----RP-------ETYKQ-AFYARDLAGTVVLVG 276 (358)
T ss_pred EEE-ECCC----CH-------HHHHH-HHHHhccCCEEEEEC
Confidence 887 5431 11 22333 456799999987643
No 332
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=88.30 E-value=1.8 Score=37.81 Aligned_cols=31 Identities=32% Similarity=0.444 Sum_probs=22.9
Q ss_pred eEEEEecch-hHH-HHHHHhcCCCcEEEEEECCh
Q 019699 105 TIFIMGGGE-GST-AREILRHKTVEKVVMCDIDE 136 (337)
Q Consensus 105 ~VLiIG~G~-G~~-~~~ll~~~~~~~v~~VEid~ 136 (337)
+||+||+|+ |+. +..+++ .+..+++.+|-|.
T Consensus 1 ~VlViG~GglGs~ia~~La~-~Gvg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLAR-SGVGNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHH-cCCCeEEEEeCCE
Confidence 589999984 443 444444 5788999999986
No 333
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=88.29 E-value=3.1 Score=37.94 Aligned_cols=71 Identities=32% Similarity=0.430 Sum_probs=49.8
Q ss_pred CeEEEEecch--hHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHH--HHHhhcC-CceeE
Q 019699 104 KTIFIMGGGE--GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDAR--AELESRK-ESYDV 178 (337)
Q Consensus 104 ~~VLiIG~G~--G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~--~~l~~~~-~~yDv 178 (337)
++++++|+|. +.+++.|.+. ...|+.+|.|++.++.... +..-.+++++|+. +.|++.+ ..+|+
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~--g~~Vv~Id~d~~~~~~~~~---------~~~~~~~v~gd~t~~~~L~~agi~~aD~ 69 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEE--GHNVVLIDRDEERVEEFLA---------DELDTHVVIGDATDEDVLEEAGIDDADA 69 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhC--CCceEEEEcCHHHHHHHhh---------hhcceEEEEecCCCHHHHHhcCCCcCCE
Confidence 4789999994 4456666654 3579999999988776322 0124677888885 4566653 78999
Q ss_pred EEEeCCC
Q 019699 179 IIGDLAD 185 (337)
Q Consensus 179 Ii~D~~d 185 (337)
++....+
T Consensus 70 vva~t~~ 76 (225)
T COG0569 70 VVAATGN 76 (225)
T ss_pred EEEeeCC
Confidence 9998764
No 334
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=88.14 E-value=3.1 Score=40.14 Aligned_cols=103 Identities=18% Similarity=0.203 Sum_probs=64.8
Q ss_pred CCeEEEEecc--hhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhc-----cCCC----CCCCeEEEEccHHHHHhh
Q 019699 103 PKTIFIMGGG--EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVN-----KEAF----SDPRLELVINDARAELES 171 (337)
Q Consensus 103 p~~VLiIG~G--~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~-----~~~~----~d~rv~v~~~D~~~~l~~ 171 (337)
.++|.+||+| +.+++..++.+ ..+|++.|.+++..+.+++.+... ...+ ...|+++. .|..+-+
T Consensus 7 i~~VaVIGaG~MG~giA~~~a~a--G~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~-~~l~~av-- 81 (321)
T PRK07066 7 IKTFAAIGSGVIGSGWVARALAH--GLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFV-ATIEACV-- 81 (321)
T ss_pred CCEEEEECcCHHHHHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceec-CCHHHHh--
Confidence 4789999999 55666666664 478999999999887766543210 0000 01244433 2322222
Q ss_pred cCCceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCC
Q 019699 172 RKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG 220 (337)
Q Consensus 172 ~~~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~ 220 (337)
..-|+|+-..++.. -..++.|+. +.+.++|+-++..|+.
T Consensus 82 --~~aDlViEavpE~l-------~vK~~lf~~-l~~~~~~~aIlaSnTS 120 (321)
T PRK07066 82 --ADADFIQESAPERE-------ALKLELHER-ISRAAKPDAIIASSTS 120 (321)
T ss_pred --cCCCEEEECCcCCH-------HHHHHHHHH-HHHhCCCCeEEEECCC
Confidence 45789998765321 124577888 7888999888887764
No 335
>PRK11524 putative methyltransferase; Provisional
Probab=88.10 E-value=1.4 Score=41.53 Aligned_cols=56 Identities=14% Similarity=0.013 Sum_probs=44.4
Q ss_pred HHHHhHHHhcCCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhh
Q 019699 90 ESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLV 147 (337)
Q Consensus 90 e~l~~~~l~~~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~ 147 (337)
+++-.+-.+...+..-|||--+|+|+++..+.+. ..+..++|||++.+++|++.+.
T Consensus 196 ~L~erlI~~~S~~GD~VLDPF~GSGTT~~AA~~l--gR~~IG~Ei~~~Y~~~a~~Rl~ 251 (284)
T PRK11524 196 ALLKRIILASSNPGDIVLDPFAGSFTTGAVAKAS--GRKFIGIEINSEYIKMGLRRLD 251 (284)
T ss_pred HHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHc--CCCEEEEeCCHHHHHHHHHHHH
Confidence 3343333334466788999999999999988876 4789999999999999999864
No 336
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=88.07 E-value=4.1 Score=35.75 Aligned_cols=100 Identities=18% Similarity=0.282 Sum_probs=58.9
Q ss_pred eEEEEecchhH--HHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhc------cCCCC-------CCCeEEEEccHHHHH
Q 019699 105 TIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVN------KEAFS-------DPRLELVINDARAEL 169 (337)
Q Consensus 105 ~VLiIG~G~G~--~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~------~~~~~-------d~rv~v~~~D~~~~l 169 (337)
+|.+||+|.=+ ++..++.+ ..+|+++|.|++.++.+++++... .+.+. -.++++ ..| +
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~--G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~-~~d----l 73 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARA--GYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISF-TTD----L 73 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHT--TSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEE-ESS----G
T ss_pred CEEEEcCCHHHHHHHHHHHhC--CCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhccc-ccC----H
Confidence 58899998533 44444444 479999999999999888875421 11111 123442 223 2
Q ss_pred hhcCCceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCC
Q 019699 170 ESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG 220 (337)
Q Consensus 170 ~~~~~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~ 220 (337)
.... ..|+||=..+... =..+++|+. +.+.+.|+-+|+.|+.
T Consensus 74 ~~~~-~adlViEai~E~l-------~~K~~~~~~-l~~~~~~~~ilasnTS 115 (180)
T PF02737_consen 74 EEAV-DADLVIEAIPEDL-------ELKQELFAE-LDEICPPDTILASNTS 115 (180)
T ss_dssp GGGC-TESEEEE-S-SSH-------HHHHHHHHH-HHCCS-TTSEEEE--S
T ss_pred HHHh-hhheehhhccccH-------HHHHHHHHH-HHHHhCCCceEEecCC
Confidence 2222 6888886654321 124689998 8999999999999974
No 337
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=88.00 E-value=1.5 Score=43.97 Aligned_cols=75 Identities=23% Similarity=0.327 Sum_probs=43.4
Q ss_pred eEEEEecchhHHH-HH---HHhc--CCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEE-EccHHHHHhhcCCcee
Q 019699 105 TIFIMGGGEGSTA-RE---ILRH--KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELV-INDARAELESRKESYD 177 (337)
Q Consensus 105 ~VLiIG~G~G~~~-~~---ll~~--~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~-~~D~~~~l~~~~~~yD 177 (337)
+|.+||+|+-+.+ .. ++.. ....+|..+|+|++.++...+......... ....++. ..|..+-++ .-|
T Consensus 2 KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~-~~~~~I~~ttD~~eal~----~AD 76 (423)
T cd05297 2 KIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEEL-GAPLKIEATTDRREALD----GAD 76 (423)
T ss_pred eEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHhc-CCCeEEEEeCCHHHHhc----CCC
Confidence 6899999994443 22 3311 234589999999988777655432111001 1223443 556444443 468
Q ss_pred EEEEeCC
Q 019699 178 VIIGDLA 184 (337)
Q Consensus 178 vIi~D~~ 184 (337)
+||.-..
T Consensus 77 ~Vi~ai~ 83 (423)
T cd05297 77 FVINTIQ 83 (423)
T ss_pred EEEEeeE
Confidence 8888775
No 338
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=87.79 E-value=8.8 Score=36.83 Aligned_cols=81 Identities=19% Similarity=0.284 Sum_probs=48.9
Q ss_pred CCCCCeEEEEecch-hHHHHHHHhcCCC-cEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCcee
Q 019699 100 HPNPKTIFIMGGGE-GSTAREILRHKTV-EKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYD 177 (337)
Q Consensus 100 ~~~p~~VLiIG~G~-G~~~~~ll~~~~~-~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yD 177 (337)
...+++|.+||+|. |......+...+. .++..+|++++..+.-..-+.... .+. .++++..+|-.+ + +.-|
T Consensus 3 ~~~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~-~~~-~~~~i~~~~~~~-~----~~ad 75 (315)
T PRK00066 3 KKQHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAV-PFT-SPTKIYAGDYSD-C----KDAD 75 (315)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhc-ccc-CCeEEEeCCHHH-h----CCCC
Confidence 35678999999986 5555444443333 479999998876543333222111 122 346666555332 2 4589
Q ss_pred EEEEeCCCCC
Q 019699 178 VIIGDLADPI 187 (337)
Q Consensus 178 vIi~D~~dp~ 187 (337)
+||+-+-.|.
T Consensus 76 ivIitag~~~ 85 (315)
T PRK00066 76 LVVITAGAPQ 85 (315)
T ss_pred EEEEecCCCC
Confidence 9999876554
No 339
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=87.63 E-value=18 Score=31.42 Aligned_cols=109 Identities=16% Similarity=0.180 Sum_probs=62.1
Q ss_pred CCCCeEEEEecch-hHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEE
Q 019699 101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (337)
Q Consensus 101 ~~p~~VLiIG~G~-G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvI 179 (337)
-..++|.+||.|. |......++-++ .+|.+++..+.-...+... .+ ...+..+.++ +.|+|
T Consensus 34 l~g~tvgIiG~G~IG~~vA~~l~~fG-~~V~~~d~~~~~~~~~~~~-----------~~--~~~~l~ell~----~aDiv 95 (178)
T PF02826_consen 34 LRGKTVGIIGYGRIGRAVARRLKAFG-MRVIGYDRSPKPEEGADEF-----------GV--EYVSLDELLA----QADIV 95 (178)
T ss_dssp STTSEEEEESTSHHHHHHHHHHHHTT--EEEEEESSCHHHHHHHHT-----------TE--EESSHHHHHH----H-SEE
T ss_pred cCCCEEEEEEEcCCcCeEeeeeecCC-ceeEEecccCChhhhcccc-----------cc--eeeehhhhcc----hhhhh
Confidence 3578999999974 333333444454 6999999999866622221 11 2234455554 48999
Q ss_pred EEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhh
Q 019699 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQ 240 (337)
Q Consensus 180 i~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~ 240 (337)
++-.+... . -.++++.++|+. +++|.+ ++|.+-.. .-+. ..+++.|++
T Consensus 96 ~~~~plt~--~-T~~li~~~~l~~-----mk~ga~-lvN~aRG~-~vde---~aL~~aL~~ 143 (178)
T PF02826_consen 96 SLHLPLTP--E-TRGLINAEFLAK-----MKPGAV-LVNVARGE-LVDE---DALLDALES 143 (178)
T ss_dssp EE-SSSST--T-TTTSBSHHHHHT-----STTTEE-EEESSSGG-GB-H---HHHHHHHHT
T ss_pred hhhhcccc--c-cceeeeeeeeec-----cccceE-EEeccchh-hhhh---hHHHHHHhh
Confidence 99987321 1 247888888774 565555 55864221 1222 345566665
No 340
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=87.37 E-value=3.5 Score=39.95 Aligned_cols=99 Identities=15% Similarity=0.147 Sum_probs=59.0
Q ss_pred CCCCeEEEEecch-hHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhh-cCCceeE
Q 019699 101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDV 178 (337)
Q Consensus 101 ~~p~~VLiIG~G~-G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~-~~~~yDv 178 (337)
....+||++|+|. |.++..+++..+..+|++++.+++-.+.++++ ... .-+.....|..+.+.+ ..+.+|+
T Consensus 190 ~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~-Ga~------~~i~~~~~~~~~~i~~~~~~g~d~ 262 (371)
T cd08281 190 RPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALAREL-GAT------ATVNAGDPNAVEQVRELTGGGVDY 262 (371)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHc-CCc------eEeCCCchhHHHHHHHHhCCCCCE
Confidence 3457999998653 34456667766655799999999999998774 211 0011111233333433 2336998
Q ss_pred EEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (337)
Q Consensus 179 Ii~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~ 219 (337)
|| |... .+ +.++. +-+.|+++|.++.-.
T Consensus 263 vi-d~~G----~~-------~~~~~-~~~~l~~~G~iv~~G 290 (371)
T cd08281 263 AF-EMAG----SV-------PALET-AYEITRRGGTTVTAG 290 (371)
T ss_pred EE-ECCC----Ch-------HHHHH-HHHHHhcCCEEEEEc
Confidence 88 4431 11 22333 456899999887643
No 341
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=87.30 E-value=6.2 Score=35.40 Aligned_cols=98 Identities=21% Similarity=0.326 Sum_probs=59.7
Q ss_pred CCCCeEEEEecch-hHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHH-hhcCCceeE
Q 019699 101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAEL-ESRKESYDV 178 (337)
Q Consensus 101 ~~p~~VLiIG~G~-G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l-~~~~~~yDv 178 (337)
.+..+||+.|+|+ |..+..+++..+ .+|++++.+++-.+.+++..... .+ .....+...-+ ....+.+|+
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~g-~~v~~~~~~~~~~~~~~~~g~~~--~~-----~~~~~~~~~~~~~~~~~~~d~ 204 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAAG-ARVIVTDRSDEKLELAKELGADH--VI-----DYKEEDLEEELRLTGGGGADV 204 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcC-CeEEEEcCCHHHHHHHHHhCCce--ec-----cCCcCCHHHHHHHhcCCCCCE
Confidence 5678999999986 656666777654 78999999998888776542110 01 11111121111 123467999
Q ss_pred EEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (337)
Q Consensus 179 Ii~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~ 219 (337)
|+.....+ ...+. +.+.|+++|.++...
T Consensus 205 vi~~~~~~------------~~~~~-~~~~l~~~G~~v~~~ 232 (271)
T cd05188 205 VIDAVGGP------------ETLAQ-ALRLLRPGGRIVVVG 232 (271)
T ss_pred EEECCCCH------------HHHHH-HHHhcccCCEEEEEc
Confidence 98543210 23344 467889999988654
No 342
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=87.13 E-value=3.1 Score=40.43 Aligned_cols=35 Identities=34% Similarity=0.563 Sum_probs=24.5
Q ss_pred CCCeEEEEecch-hHHHHHHHhcCCCcEEEEEECCh
Q 019699 102 NPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDE 136 (337)
Q Consensus 102 ~p~~VLiIG~G~-G~~~~~ll~~~~~~~v~~VEid~ 136 (337)
...+||++|+|+ |+.....+...++.+++.||-|.
T Consensus 23 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (339)
T PRK07688 23 REKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY 58 (339)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence 457899999985 33333333345788999999983
No 343
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=87.06 E-value=2.8 Score=39.40 Aligned_cols=103 Identities=20% Similarity=0.303 Sum_probs=62.6
Q ss_pred CCeEEEEecchh--HHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhc------cCCCCC-------CCeEEEEccHHH
Q 019699 103 PKTIFIMGGGEG--STAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVN------KEAFSD-------PRLELVINDARA 167 (337)
Q Consensus 103 p~~VLiIG~G~G--~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~------~~~~~d-------~rv~v~~~D~~~ 167 (337)
-++|.+||+|.= .++..+++. ..+|+++|.+++.++.+.+.+... .+.+.. .++++. .|. +
T Consensus 4 ~~kI~vIGaG~mG~~iA~~la~~--G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~-~ 79 (292)
T PRK07530 4 IKKVGVIGAGQMGNGIAHVCALA--GYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTA-TDL-E 79 (292)
T ss_pred CCEEEEECCcHHHHHHHHHHHHC--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEee-CCH-H
Confidence 368999999943 455555554 358999999999888765432210 111110 233332 332 2
Q ss_pred HHhhcCCceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCC
Q 019699 168 ELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGP 221 (337)
Q Consensus 168 ~l~~~~~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~ 221 (337)
-+ ...|+||.-.++.. -....+|+. +...++++.+++.++.+
T Consensus 80 ~~----~~aD~Vieavpe~~-------~~k~~~~~~-l~~~~~~~~ii~s~ts~ 121 (292)
T PRK07530 80 DL----ADCDLVIEAATEDE-------TVKRKIFAQ-LCPVLKPEAILATNTSS 121 (292)
T ss_pred Hh----cCCCEEEEcCcCCH-------HHHHHHHHH-HHhhCCCCcEEEEcCCC
Confidence 22 35799998876421 123467777 78889999888767643
No 344
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=86.94 E-value=2 Score=38.95 Aligned_cols=76 Identities=13% Similarity=0.212 Sum_probs=42.2
Q ss_pred HHHhcCCCCCeEEEEecchhHHHH--HHHhcCCCcEEEEEECC--hHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHh
Q 019699 95 PALLHHPNPKTIFIMGGGEGSTAR--EILRHKTVEKVVMCDID--EEVVEFCKSYLVVNKEAFSDPRLELVINDARAELE 170 (337)
Q Consensus 95 ~~l~~~~~p~~VLiIG~G~G~~~~--~ll~~~~~~~v~~VEid--~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~ 170 (337)
+|++..-+.++||++|||+-+.-+ .+++. .++|++|=.+ +++-.+..+ .++.++. + .|-.
T Consensus 4 lPl~~~l~~k~VlvvGgG~va~rKa~~ll~~--ga~v~Vvs~~~~~el~~~~~~-----------~~i~~~~-~--~~~~ 67 (210)
T COG1648 4 LPLFLDLEGKKVLVVGGGSVALRKARLLLKA--GADVTVVSPEFEPELKALIEE-----------GKIKWIE-R--EFDA 67 (210)
T ss_pred cceEEEcCCCEEEEECCCHHHHHHHHHHHhc--CCEEEEEcCCccHHHHHHHHh-----------cCcchhh-c--ccCh
Confidence 466666678899999999888753 34443 4666665333 333332222 2233332 1 2222
Q ss_pred hcCCceeEEEEeCCCC
Q 019699 171 SRKESYDVIIGDLADP 186 (337)
Q Consensus 171 ~~~~~yDvIi~D~~dp 186 (337)
..-..+++||....|+
T Consensus 68 ~~~~~~~lviaAt~d~ 83 (210)
T COG1648 68 EDLDDAFLVIAATDDE 83 (210)
T ss_pred hhhcCceEEEEeCCCH
Confidence 2223389999887654
No 345
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=86.83 E-value=2 Score=42.16 Aligned_cols=34 Identities=26% Similarity=0.378 Sum_probs=25.4
Q ss_pred CCCeEEEEecch-hHHHHHHHhcCCCcEEEEEECC
Q 019699 102 NPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDID 135 (337)
Q Consensus 102 ~p~~VLiIG~G~-G~~~~~ll~~~~~~~v~~VEid 135 (337)
..++||++|+|+ |......+...++.+++.||-|
T Consensus 134 ~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d 168 (376)
T PRK08762 134 LEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD 168 (376)
T ss_pred hcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 567999999984 4444444445678999999998
No 346
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=86.73 E-value=3.7 Score=36.65 Aligned_cols=34 Identities=18% Similarity=0.389 Sum_probs=23.9
Q ss_pred CCeEEEEecch-hHHHHHHHhcCCCcEEEEEECCh
Q 019699 103 PKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDE 136 (337)
Q Consensus 103 p~~VLiIG~G~-G~~~~~ll~~~~~~~v~~VEid~ 136 (337)
..+||++|+|+ |+-....+...++.+++.+|-|.
T Consensus 19 ~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~ 53 (198)
T cd01485 19 SAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRL 53 (198)
T ss_pred hCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence 47899999985 33333333346889999999874
No 347
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=86.69 E-value=1.8 Score=37.68 Aligned_cols=104 Identities=16% Similarity=0.228 Sum_probs=59.0
Q ss_pred CCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeE-EEEccHHHHHhhcCCceeEEEE
Q 019699 103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLE-LVINDARAELESRKESYDVIIG 181 (337)
Q Consensus 103 p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~-v~~~D~~~~l~~~~~~yDvIi~ 181 (337)
.++++++|..-=-+-..+++| +..+|..||-++--++ .+ +. .|+. +...|..+-.++..++||.+.+
T Consensus 2 ~~~g~V~GS~~PwvEv~aL~~-GA~~iltveyn~L~i~--~~--------~~-dr~ssi~p~df~~~~~~y~~~fD~~as 69 (177)
T PF03269_consen 2 GKSGLVVGSMQPWVEVMALQH-GAAKILTVEYNKLEIQ--EE--------FR-DRLSSILPVDFAKNWQKYAGSFDFAAS 69 (177)
T ss_pred CceEEEEecCCchhhHHHHHc-CCceEEEEeecccccC--cc--------cc-cccccccHHHHHHHHHHhhccchhhhe
Confidence 578999999865555555665 5788999998762211 11 11 2332 2223333333445678998876
Q ss_pred eCC-CCCC----CCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699 182 DLA-DPIE----GGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (337)
Q Consensus 182 D~~-dp~~----~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~ 219 (337)
-.. ++.. ..|....-...-+.. +++.||+||.+.+-.
T Consensus 70 ~~siEh~GLGRYGDPidp~Gdl~~m~~-i~~vLK~GG~L~l~v 111 (177)
T PF03269_consen 70 FSSIEHFGLGRYGDPIDPIGDLRAMAK-IKCVLKPGGLLFLGV 111 (177)
T ss_pred echhccccccccCCCCCccccHHHHHH-HHHhhccCCeEEEEe
Confidence 554 2210 122222223344555 689999999887653
No 348
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=86.68 E-value=14 Score=29.22 Aligned_cols=109 Identities=20% Similarity=0.198 Sum_probs=68.3
Q ss_pred eEEEEecchhHHH--HHHHhcCCCcEEE-EEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEEE
Q 019699 105 TIFIMGGGEGSTA--REILRHKTVEKVV-MCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG 181 (337)
Q Consensus 105 ~VLiIG~G~G~~~--~~ll~~~~~~~v~-~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~ 181 (337)
||.+||+|..+.. ..+.+..+..+++ ++|.+++-.+.+.+.+. +. ...|..+.+... ..|+|++
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~----------~~-~~~~~~~ll~~~--~~D~V~I 68 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKYG----------IP-VYTDLEELLADE--DVDAVII 68 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTT----------SE-EESSHHHHHHHT--TESEEEE
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhc----------cc-chhHHHHHHHhh--cCCEEEE
Confidence 7899999876443 3444443445655 88999987776655432 22 667777777653 6999999
Q ss_pred eCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhhc
Q 019699 182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVF 242 (337)
Q Consensus 182 D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~vF 242 (337)
-.+... + ++. +...|+-|--+++.- | ...+.+..+++.+..++.-
T Consensus 69 ~tp~~~------h------~~~-~~~~l~~g~~v~~EK--P-~~~~~~~~~~l~~~a~~~~ 113 (120)
T PF01408_consen 69 ATPPSS------H------AEI-AKKALEAGKHVLVEK--P-LALTLEEAEELVEAAKEKG 113 (120)
T ss_dssp ESSGGG------H------HHH-HHHHHHTTSEEEEES--S-SSSSHHHHHHHHHHHHHHT
T ss_pred ecCCcc------h------HHH-HHHHHHcCCEEEEEc--C-CcCCHHHHHHHHHHHHHhC
Confidence 876321 1 222 455666666555554 2 1346677777777776543
No 349
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=86.62 E-value=2.6 Score=39.83 Aligned_cols=101 Identities=12% Similarity=0.296 Sum_probs=64.6
Q ss_pred CeEEEEecc--hhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhh------ccCCCCC-------CCeEEEEccHHHH
Q 019699 104 KTIFIMGGG--EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVV------NKEAFSD-------PRLELVINDARAE 168 (337)
Q Consensus 104 ~~VLiIG~G--~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~------~~~~~~d-------~rv~v~~~D~~~~ 168 (337)
++|-+||+| +++++..+++. ..+|+++|.+++.++.+++.... ..+.+.+ .|+++ ..|. +-
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~--G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~-~~~~-~~ 81 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARA--GVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRF-TTDL-GD 81 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhC--CCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEe-eCCH-HH
Confidence 589999999 66677777765 46899999999999887665321 1111111 12322 2332 22
Q ss_pred HhhcCCceeEEEEeCCCCCCCCCCcCCchHHHHHHHhcccc-CCCceEEEeCC
Q 019699 169 LESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRL-NPEGIFVTQAG 220 (337)
Q Consensus 169 l~~~~~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L-~p~Gvlv~~~~ 220 (337)
+ ..-|+||--.++.. -..++.|.. +.+.+ +|+-+++.|+.
T Consensus 82 ~----~~~d~ViEav~E~~-------~~K~~l~~~-l~~~~~~~~~il~snTS 122 (286)
T PRK07819 82 F----ADRQLVIEAVVEDE-------AVKTEIFAE-LDKVVTDPDAVLASNTS 122 (286)
T ss_pred h----CCCCEEEEecccCH-------HHHHHHHHH-HHHhhCCCCcEEEECCC
Confidence 2 45799998776422 124567787 77778 78888888864
No 350
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=86.62 E-value=4.2 Score=38.28 Aligned_cols=100 Identities=19% Similarity=0.336 Sum_probs=60.1
Q ss_pred CeEEEEecc--hhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhh---------ccCCCCC-------CCeEEEEccH
Q 019699 104 KTIFIMGGG--EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVV---------NKEAFSD-------PRLELVINDA 165 (337)
Q Consensus 104 ~~VLiIG~G--~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~---------~~~~~~d-------~rv~v~~~D~ 165 (337)
++|.+||+| +++++..++++ ..+|+++|.+++.++.+++.... ..+.... .+++.. .|.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~--G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~ 80 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFART--GYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTS-TSY 80 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEee-CCH
Confidence 689999999 44556666654 35899999999999876553211 0000000 122221 222
Q ss_pred HHHHhhcCCceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699 166 RAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (337)
Q Consensus 166 ~~~l~~~~~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~ 219 (337)
+-+ ...|+||.-.+... -...++|+. +.+.++++.+++.++
T Consensus 81 -~~~----~~aDlVieav~e~~-------~~k~~~~~~-l~~~~~~~~il~S~t 121 (291)
T PRK06035 81 -ESL----SDADFIVEAVPEKL-------DLKRKVFAE-LERNVSPETIIASNT 121 (291)
T ss_pred -HHh----CCCCEEEEcCcCcH-------HHHHHHHHH-HHhhCCCCeEEEEcC
Confidence 212 34799998775321 123577887 788888888887664
No 351
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=86.60 E-value=3.5 Score=36.79 Aligned_cols=35 Identities=14% Similarity=0.203 Sum_probs=23.9
Q ss_pred CCCeEEEEecch-hHHHHHHHhcCCCcEEEEEECCh
Q 019699 102 NPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDE 136 (337)
Q Consensus 102 ~p~~VLiIG~G~-G~~~~~ll~~~~~~~v~~VEid~ 136 (337)
...+||++|+|+ |+-....+...++.+++.+|-|.
T Consensus 20 ~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ 55 (197)
T cd01492 20 RSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRT 55 (197)
T ss_pred HhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence 347899999875 33233333346789999999874
No 352
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=86.56 E-value=4.4 Score=40.52 Aligned_cols=43 Identities=16% Similarity=0.218 Sum_probs=32.0
Q ss_pred CCCeEEEEecchhHH-HHHHHhcCCCcEEEEEECChHHHHHHHhh
Q 019699 102 NPKTIFIMGGGEGST-AREILRHKTVEKVVMCDIDEEVVEFCKSY 145 (337)
Q Consensus 102 ~p~~VLiIG~G~G~~-~~~ll~~~~~~~v~~VEid~~vi~~a~~~ 145 (337)
..++|+++|+|.=+. ...+++..+ .+|+++|+|+.-.+.|++.
T Consensus 201 ~GktVvViG~G~IG~~va~~ak~~G-a~ViV~d~d~~R~~~A~~~ 244 (413)
T cd00401 201 AGKVAVVAGYGDVGKGCAQSLRGQG-ARVIVTEVDPICALQAAME 244 (413)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC-CEEEEEECChhhHHHHHhc
Confidence 578999999997544 333445454 4899999999888887763
No 353
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=86.53 E-value=4.8 Score=38.46 Aligned_cols=98 Identities=18% Similarity=0.210 Sum_probs=58.9
Q ss_pred CCCCeEEEEecc-hhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhh--cCCcee
Q 019699 101 PNPKTIFIMGGG-EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES--RKESYD 177 (337)
Q Consensus 101 ~~p~~VLiIG~G-~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~--~~~~yD 177 (337)
...++||+.|+| .|..+..++++.+...+++++.+++-.+.++++ +.. .-+.....|..+.+.+ ..+.+|
T Consensus 165 ~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~-g~~------~~v~~~~~~~~~~i~~~~~~~~~d 237 (351)
T cd08285 165 KLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKEY-GAT------DIVDYKNGDVVEQILKLTGGKGVD 237 (351)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc-CCc------eEecCCCCCHHHHHHHHhCCCCCc
Confidence 456899999765 344456677777766799999999888888874 211 1111111232232322 234699
Q ss_pred EEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699 178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (337)
Q Consensus 178 vIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~ 218 (337)
+|+--.. ++ ..+.. +.++|+++|.++.-
T Consensus 238 ~vld~~g-----~~-------~~~~~-~~~~l~~~G~~v~~ 265 (351)
T cd08285 238 AVIIAGG-----GQ-------DTFEQ-ALKVLKPGGTISNV 265 (351)
T ss_pred EEEECCC-----CH-------HHHHH-HHHHhhcCCEEEEe
Confidence 8874322 11 23444 56789999988753
No 354
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=86.40 E-value=4.9 Score=33.38 Aligned_cols=84 Identities=14% Similarity=0.289 Sum_probs=49.2
Q ss_pred CCCCeEEEEecchhH--HHHHHHhcCCCcEEEEEECChHHHH-HHHhhhhhccCCCCCCCeEEEEc-cHHHHHhhcCCce
Q 019699 101 PNPKTIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVE-FCKSYLVVNKEAFSDPRLELVIN-DARAELESRKESY 176 (337)
Q Consensus 101 ~~p~~VLiIG~G~G~--~~~~ll~~~~~~~v~~VEid~~vi~-~a~~~f~~~~~~~~d~rv~v~~~-D~~~~l~~~~~~y 176 (337)
-+.++||+||+|+-+ ++..++++ +..+|+++--+.+=.+ +++++ + ...++++.- |..+.+ ..+
T Consensus 10 l~~~~vlviGaGg~ar~v~~~L~~~-g~~~i~i~nRt~~ra~~l~~~~-~-------~~~~~~~~~~~~~~~~----~~~ 76 (135)
T PF01488_consen 10 LKGKRVLVIGAGGAARAVAAALAAL-GAKEITIVNRTPERAEALAEEF-G-------GVNIEAIPLEDLEEAL----QEA 76 (135)
T ss_dssp GTTSEEEEESSSHHHHHHHHHHHHT-TSSEEEEEESSHHHHHHHHHHH-T-------GCSEEEEEGGGHCHHH----HTE
T ss_pred cCCCEEEEECCHHHHHHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHc-C-------ccccceeeHHHHHHHH----hhC
Confidence 467899999997532 23444444 6788999999976444 44443 1 234555433 322233 469
Q ss_pred eEEEEeCCCCCCCCCCcCCchHHHHHH
Q 019699 177 DVIIGDLADPIEGGPCYKLYTKSFYEF 203 (337)
Q Consensus 177 DvIi~D~~dp~~~~p~~~L~t~ef~~~ 203 (337)
|+||.-.+.+. ...+.+.+..
T Consensus 77 DivI~aT~~~~------~~i~~~~~~~ 97 (135)
T PF01488_consen 77 DIVINATPSGM------PIITEEMLKK 97 (135)
T ss_dssp SEEEE-SSTTS------TSSTHHHHTT
T ss_pred CeEEEecCCCC------cccCHHHHHH
Confidence 99998876432 2455555443
No 355
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=86.36 E-value=6.1 Score=37.19 Aligned_cols=35 Identities=29% Similarity=0.451 Sum_probs=27.7
Q ss_pred CCCeEEEEecc-hhHHHHHHHhcCCCcEEEEEECCh
Q 019699 102 NPKTIFIMGGG-EGSTAREILRHKTVEKVVMCDIDE 136 (337)
Q Consensus 102 ~p~~VLiIG~G-~G~~~~~ll~~~~~~~v~~VEid~ 136 (337)
...+||++|+| -|+...+.+...++.+++.||-|.
T Consensus 29 ~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~ 64 (268)
T PRK15116 29 ADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDD 64 (268)
T ss_pred cCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCE
Confidence 56799999998 466666666667789999999884
No 356
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=86.10 E-value=3.1 Score=33.52 Aligned_cols=87 Identities=21% Similarity=0.233 Sum_probs=58.1
Q ss_pred chhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhc-C-CceeEEEEeCCCCCCC
Q 019699 112 GEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR-K-ESYDVIIGDLADPIEG 189 (337)
Q Consensus 112 G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~-~-~~yDvIi~D~~dp~~~ 189 (337)
|-|..+..++++.+ .+|++++.++.-.+.++++-...- +.....|..+.+++. + +.+|+||--...
T Consensus 1 ~vG~~a~q~ak~~G-~~vi~~~~~~~k~~~~~~~Ga~~~-------~~~~~~~~~~~i~~~~~~~~~d~vid~~g~---- 68 (130)
T PF00107_consen 1 GVGLMAIQLAKAMG-AKVIATDRSEEKLELAKELGADHV-------IDYSDDDFVEQIRELTGGRGVDVVIDCVGS---- 68 (130)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEESSHHHHHHHHHTTESEE-------EETTTSSHHHHHHHHTTTSSEEEEEESSSS----
T ss_pred ChHHHHHHHHHHcC-CEEEEEECCHHHHHHHHhhccccc-------ccccccccccccccccccccceEEEEecCc----
Confidence 45788888899887 899999999999999998642110 011112245555553 2 479999855421
Q ss_pred CCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699 190 GPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (337)
Q Consensus 190 ~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~ 219 (337)
.+-++. +-++|+++|.+++-.
T Consensus 69 --------~~~~~~-~~~~l~~~G~~v~vg 89 (130)
T PF00107_consen 69 --------GDTLQE-AIKLLRPGGRIVVVG 89 (130)
T ss_dssp --------HHHHHH-HHHHEEEEEEEEEES
T ss_pred --------HHHHHH-HHHHhccCCEEEEEE
Confidence 134455 567899999988765
No 357
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=86.07 E-value=0.62 Score=43.10 Aligned_cols=45 Identities=31% Similarity=0.387 Sum_probs=35.4
Q ss_pred CCeEEEEecchhHHHHHHHhcC--------CCcEEEEEECChHHHHHHHhhhh
Q 019699 103 PKTIFIMGGGEGSTAREILRHK--------TVEKVVMCDIDEEVVEFCKSYLV 147 (337)
Q Consensus 103 p~~VLiIG~G~G~~~~~ll~~~--------~~~~v~~VEid~~vi~~a~~~f~ 147 (337)
+-+|+++|+|.|.+++-++++. ...+++.||++|...+.-++.+.
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~ 71 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLS 71 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCC
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhh
Confidence 5799999999999998888742 23589999999999998888764
No 358
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=86.06 E-value=3.5 Score=41.95 Aligned_cols=104 Identities=17% Similarity=0.207 Sum_probs=57.0
Q ss_pred CCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEE
Q 019699 100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (337)
Q Consensus 100 ~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvI 179 (337)
...-++|+++.+|.|+++.++.+.+ |.+.-.-|. .....++.- + |-.+-=+.-|--+-+...+++||+|
T Consensus 363 ~~~iRNVMDMnAg~GGFAAAL~~~~----VWVMNVVP~---~~~ntL~vI---y-dRGLIG~yhDWCE~fsTYPRTYDLl 431 (506)
T PF03141_consen 363 WGRIRNVMDMNAGYGGFAAALIDDP----VWVMNVVPV---SGPNTLPVI---Y-DRGLIGVYHDWCEAFSTYPRTYDLL 431 (506)
T ss_pred ccceeeeeeecccccHHHHHhccCC----ceEEEeccc---CCCCcchhh---h-hcccchhccchhhccCCCCcchhhe
Confidence 4567899999999999999998753 322222111 111111110 0 1111111223334444567999999
Q ss_pred EEeCC-CCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699 180 IGDLA-DPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (337)
Q Consensus 180 i~D~~-dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~ 219 (337)
=.+.- +... ..+ . -...+-+ +.|+|+|+|.+++.-
T Consensus 432 HA~~lfs~~~-~rC--~-~~~illE-mDRILRP~G~~iiRD 467 (506)
T PF03141_consen 432 HADGLFSLYK-DRC--E-MEDILLE-MDRILRPGGWVIIRD 467 (506)
T ss_pred ehhhhhhhhc-ccc--c-HHHHHHH-hHhhcCCCceEEEec
Confidence 87753 2221 111 1 1334444 689999999999863
No 359
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=85.98 E-value=3.4 Score=43.49 Aligned_cols=71 Identities=27% Similarity=0.422 Sum_probs=50.4
Q ss_pred CCeEEEEecch-hHH-HHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHH--HHhhcC-Ccee
Q 019699 103 PKTIFIMGGGE-GST-AREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA--ELESRK-ESYD 177 (337)
Q Consensus 103 p~~VLiIG~G~-G~~-~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~--~l~~~~-~~yD 177 (337)
..+|+++|+|. |.. ++.+.+. ..+++++|.|++-++.++++ ..+++.+|+.+ .+++.+ ++.|
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~--g~~vvvID~d~~~v~~~~~~-----------g~~v~~GDat~~~~L~~agi~~A~ 466 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSS--GVKMTVLDHDPDHIETLRKF-----------GMKVFYGDATRMDLLESAGAAKAE 466 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhC--CCCEEEEECCHHHHHHHHhc-----------CCeEEEEeCCCHHHHHhcCCCcCC
Confidence 36899999984 333 3344432 35799999999999988763 35789999864 455433 6899
Q ss_pred EEEEeCCCC
Q 019699 178 VIIGDLADP 186 (337)
Q Consensus 178 vIi~D~~dp 186 (337)
++++-..|+
T Consensus 467 ~vvv~~~d~ 475 (621)
T PRK03562 467 VLINAIDDP 475 (621)
T ss_pred EEEEEeCCH
Confidence 999887654
No 360
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=85.93 E-value=5.4 Score=38.07 Aligned_cols=100 Identities=20% Similarity=0.192 Sum_probs=57.4
Q ss_pred CCCCeEEEEecch-hHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhc-CCceeE
Q 019699 101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR-KESYDV 178 (337)
Q Consensus 101 ~~p~~VLiIG~G~-G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~-~~~yDv 178 (337)
...++||+.|+|. |..+..+++..+...|.+++.+++-.+.++++ +.. ..+ .....+..+..+.. ...+|.
T Consensus 159 ~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~-Ga~-~~i-----~~~~~~~~~~~~~~~~~~~d~ 231 (347)
T PRK10309 159 CEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKSL-GAM-QTF-----NSREMSAPQIQSVLRELRFDQ 231 (347)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc-CCc-eEe-----cCcccCHHHHHHHhcCCCCCe
Confidence 4568999998653 23345566666655688999999988888764 211 001 11111212222222 246886
Q ss_pred EEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (337)
Q Consensus 179 Ii~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~ 219 (337)
+++|... ++ ..+.. .-+.|+++|.+++-.
T Consensus 232 ~v~d~~G----~~-------~~~~~-~~~~l~~~G~iv~~G 260 (347)
T PRK10309 232 LILETAG----VP-------QTVEL-AIEIAGPRAQLALVG 260 (347)
T ss_pred EEEECCC----CH-------HHHHH-HHHHhhcCCEEEEEc
Confidence 7778652 11 23344 457899999987653
No 361
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=85.87 E-value=4.6 Score=41.47 Aligned_cols=105 Identities=15% Similarity=0.317 Sum_probs=66.6
Q ss_pred CCCCeEEEEecc--hhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhh------ccCCCCC-------CCeEEEEccH
Q 019699 101 PNPKTIFIMGGG--EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVV------NKEAFSD-------PRLELVINDA 165 (337)
Q Consensus 101 ~~p~~VLiIG~G--~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~------~~~~~~d-------~rv~v~~~D~ 165 (337)
.+.++|-+||+| +++++..+++. .-.|++.|.+++.++.++++... ..+.+.. .|++.. .|.
T Consensus 5 ~~i~~V~VIGaG~MG~gIA~~la~a--G~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~-~~~ 81 (507)
T PRK08268 5 PSIATVAVIGAGAMGAGIAQVAAQA--GHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPV-EAL 81 (507)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CCH
Confidence 355789999999 55677777765 36899999999999887655431 1111100 134433 232
Q ss_pred HHHHhhcCCceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCC
Q 019699 166 RAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGP 221 (337)
Q Consensus 166 ~~~l~~~~~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~ 221 (337)
.. + ..-|+||--.++.. -....+|+. +.+.++++.+++.|+++
T Consensus 82 ~~-~----~~aDlViEav~E~~-------~vK~~vf~~-l~~~~~~~ailasntSt 124 (507)
T PRK08268 82 AD-L----ADCDLVVEAIVERL-------DVKQALFAQ-LEAIVSPDCILATNTSS 124 (507)
T ss_pred HH-h----CCCCEEEEcCcccH-------HHHHHHHHH-HHhhCCCCcEEEECCCC
Confidence 22 2 35799998877532 123466777 67778888888878653
No 362
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=85.85 E-value=4.8 Score=37.89 Aligned_cols=103 Identities=18% Similarity=0.239 Sum_probs=62.4
Q ss_pred CCeEEEEecc--hhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhh-----c-cCCCCC-------CCeEEEEccHHH
Q 019699 103 PKTIFIMGGG--EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVV-----N-KEAFSD-------PRLELVINDARA 167 (337)
Q Consensus 103 p~~VLiIG~G--~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~-----~-~~~~~d-------~rv~v~~~D~~~ 167 (337)
-++|.+||+| +..++..++++ ..+|+++|.+++.++.+++.+.. . .+.+.. .+++ ...|. +
T Consensus 4 ~~~V~vIG~G~mG~~iA~~l~~~--G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~-~ 79 (295)
T PLN02545 4 IKKVGVVGAGQMGSGIAQLAAAA--GMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIR-CTTNL-E 79 (295)
T ss_pred cCEEEEECCCHHHHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceE-eeCCH-H
Confidence 4689999999 55666777665 36899999999988766554321 0 000100 1122 22332 2
Q ss_pred HHhhcCCceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCC
Q 019699 168 ELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGP 221 (337)
Q Consensus 168 ~l~~~~~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~ 221 (337)
-+ +.-|+||.-.++.. .+ ...+|+. +.+.++++.+++.++.+
T Consensus 80 ~~----~~aD~Vieav~e~~------~~-k~~v~~~-l~~~~~~~~il~s~tS~ 121 (295)
T PLN02545 80 EL----RDADFIIEAIVESE------DL-KKKLFSE-LDRICKPSAILASNTSS 121 (295)
T ss_pred Hh----CCCCEEEEcCccCH------HH-HHHHHHH-HHhhCCCCcEEEECCCC
Confidence 22 34699998876421 11 3467777 67788888888777643
No 363
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=85.70 E-value=3.4 Score=32.67 Aligned_cols=91 Identities=19% Similarity=0.341 Sum_probs=49.8
Q ss_pred CCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEE
Q 019699 100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (337)
Q Consensus 100 ~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvI 179 (337)
.-+.++||+||+|.-+..+.-.-.....+|+++.-+. +.++ .+++++..+.. ..-..+|+|
T Consensus 4 ~l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~---~~~~------------~~i~~~~~~~~----~~l~~~~lV 64 (103)
T PF13241_consen 4 DLKGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI---EFSE------------GLIQLIRREFE----EDLDGADLV 64 (103)
T ss_dssp --TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE---HHHH------------TSCEEEESS-G----GGCTTESEE
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch---hhhh------------hHHHHHhhhHH----HHHhhheEE
Confidence 3567899999999877754433333458999988776 2222 24455444322 223569999
Q ss_pred EEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCCC
Q 019699 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPA 222 (337)
Q Consensus 180 i~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p 222 (337)
+....++. .....++ ..+.-|+++-....|
T Consensus 65 ~~at~d~~--------~n~~i~~-----~a~~~~i~vn~~D~p 94 (103)
T PF13241_consen 65 FAATDDPE--------LNEAIYA-----DARARGILVNVVDDP 94 (103)
T ss_dssp EE-SS-HH--------HHHHHHH-----HHHHTTSEEEETT-C
T ss_pred EecCCCHH--------HHHHHHH-----HHhhCCEEEEECCCc
Confidence 97765431 1233444 344578887555444
No 364
>PTZ00117 malate dehydrogenase; Provisional
Probab=85.55 E-value=10 Score=36.49 Aligned_cols=107 Identities=21% Similarity=0.284 Sum_probs=57.9
Q ss_pred CCCeEEEEecch-hHHHHHHHhcCCCcEEEEEECChHHHHHHHhh-hhhccCCCCCCCeEEEE-ccHHHHHhhcCCceeE
Q 019699 102 NPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSY-LVVNKEAFSDPRLELVI-NDARAELESRKESYDV 178 (337)
Q Consensus 102 ~p~~VLiIG~G~-G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~-f~~~~~~~~d~rv~v~~-~D~~~~l~~~~~~yDv 178 (337)
+..+|.+||+|. |.....++...+..++..+|++++..+ +... +... ........++.. +|-. -+ ..-|+
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~-g~~lDl~~~-~~~~~~~~~i~~~~d~~-~l----~~ADi 76 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQ-GKALDLKHF-STLVGSNINILGTNNYE-DI----KDSDV 76 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccch-hHHHHHhhh-ccccCCCeEEEeCCCHH-Hh----CCCCE
Confidence 346899999998 776666665545467999999987654 2221 1111 111223345554 5532 33 34699
Q ss_pred EEEeCCCCCCCCCC-cC------CchHHHHHHHhccccCCCceEEE
Q 019699 179 IIGDLADPIEGGPC-YK------LYTKSFYEFVVKPRLNPEGIFVT 217 (337)
Q Consensus 179 Ii~D~~dp~~~~p~-~~------L~t~ef~~~~~~~~L~p~Gvlv~ 217 (337)
|++-.-.+...+.. .. -.-+++.+. +.+ ..|++++++
T Consensus 77 VVitag~~~~~g~~r~dll~~n~~i~~~i~~~-i~~-~~p~a~viv 120 (319)
T PTZ00117 77 VVITAGVQRKEEMTREDLLTINGKIMKSVAES-VKK-YCPNAFVIC 120 (319)
T ss_pred EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHH-HHH-HCCCeEEEE
Confidence 99877433311110 00 111345555 443 478996654
No 365
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=85.54 E-value=29 Score=34.15 Aligned_cols=118 Identities=14% Similarity=0.181 Sum_probs=71.7
Q ss_pred CCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHH-HHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEV-VEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (337)
Q Consensus 102 ~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~v-i~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi 180 (337)
..|.|++.|-|..+=+.......-..+|.+.|+||-- ++++- +.+++...+ +....-|++|
T Consensus 208 aGK~vVV~GYG~vGrG~A~~~rg~GA~ViVtEvDPI~AleA~M------------dGf~V~~m~------~Aa~~gDifi 269 (420)
T COG0499 208 AGKNVVVAGYGWVGRGIAMRLRGMGARVIVTEVDPIRALEAAM------------DGFRVMTME------EAAKTGDIFV 269 (420)
T ss_pred cCceEEEecccccchHHHHHhhcCCCeEEEEecCchHHHHHhh------------cCcEEEEhH------HhhhcCCEEE
Confidence 5789999999987655554444446899999999953 23322 223443322 2223357777
Q ss_pred EeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhhcCceeEEEe
Q 019699 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSA 250 (337)
Q Consensus 181 ~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~vF~~v~~~~~ 250 (337)
.-.-. ....+.|-+.. ++ +|.++.|.|+-+.--+...+++.....+++-|.|.-|..
T Consensus 270 T~TGn-------kdVi~~eh~~~-----Mk-DgaIl~N~GHFd~EI~~~~L~~~~~~~~~vr~~V~ey~l 326 (420)
T COG0499 270 TATGN-------KDVIRKEHFEK-----MK-DGAILANAGHFDVEIDVAGLEELAVEKREVRPQVDEYEL 326 (420)
T ss_pred EccCC-------cCccCHHHHHh-----cc-CCeEEecccccceeccHHHHHHhhhhHhccccCceEEEc
Confidence 65422 24445555554 33 677778988643333455566666677888888887753
No 366
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=85.29 E-value=3.2 Score=37.75 Aligned_cols=35 Identities=31% Similarity=0.453 Sum_probs=24.0
Q ss_pred CCCeEEEEecch-hHHHHHHHhcCCCcEEEEEECCh
Q 019699 102 NPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDE 136 (337)
Q Consensus 102 ~p~~VLiIG~G~-G~~~~~ll~~~~~~~v~~VEid~ 136 (337)
...+|+++|+|+ |+.....+...++.+++.||-|.
T Consensus 20 ~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ 55 (228)
T cd00757 20 KNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDV 55 (228)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 357999999984 33333334445789999997664
No 367
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=85.17 E-value=11 Score=35.96 Aligned_cols=96 Identities=19% Similarity=0.208 Sum_probs=53.7
Q ss_pred CCCeEEEEecchhH-HHHHHHhcCCCcEEEEEECChHH-HHHHHhhhhhccCCCCCCCeEEEE-ccHHHHHhhcCCceeE
Q 019699 102 NPKTIFIMGGGEGS-TAREILRHKTVEKVVMCDIDEEV-VEFCKSYLVVNKEAFSDPRLELVI-NDARAELESRKESYDV 178 (337)
Q Consensus 102 ~p~~VLiIG~G~G~-~~~~ll~~~~~~~v~~VEid~~v-i~~a~~~f~~~~~~~~d~rv~v~~-~D~~~~l~~~~~~yDv 178 (337)
..++|++||+|.=+ .....++..+..+|++++.+++- .++++++ +. .++. .|..+.+ ..+|+
T Consensus 177 ~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~-g~----------~~~~~~~~~~~l----~~aDv 241 (311)
T cd05213 177 KGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKEL-GG----------NAVPLDELLELL----NEADV 241 (311)
T ss_pred cCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHc-CC----------eEEeHHHHHHHH----hcCCE
Confidence 57899999986422 22222333456789999999864 4666654 11 1221 2333333 35899
Q ss_pred EEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCCC
Q 019699 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPA 222 (337)
Q Consensus 179 Ii~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p 222 (337)
||.-.+.+. | .+.+.. +.+....+|.+++....|
T Consensus 242 Vi~at~~~~---~------~~~~~~-~~~~~~~~~~~viDlavP 275 (311)
T cd05213 242 VISATGAPH---Y------AKIVER-AMKKRSGKPRLIVDLAVP 275 (311)
T ss_pred EEECCCCCc---h------HHHHHH-HHhhCCCCCeEEEEeCCC
Confidence 998876432 1 233333 222222367888887544
No 368
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=85.13 E-value=5 Score=36.83 Aligned_cols=35 Identities=31% Similarity=0.399 Sum_probs=26.8
Q ss_pred CCCeEEEEecc-hhHHHHHHHhcCCCcEEEEEECCh
Q 019699 102 NPKTIFIMGGG-EGSTAREILRHKTVEKVVMCDIDE 136 (337)
Q Consensus 102 ~p~~VLiIG~G-~G~~~~~ll~~~~~~~v~~VEid~ 136 (337)
...+||++|+| .|+...+.+.+.++.+++.||-|.
T Consensus 10 ~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~ 45 (231)
T cd00755 10 RNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDV 45 (231)
T ss_pred hCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence 34689999997 455555556667899999999875
No 369
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=85.04 E-value=6.7 Score=37.14 Aligned_cols=103 Identities=17% Similarity=0.305 Sum_probs=59.1
Q ss_pred CCeEEEEecc--hhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCC--------CCeEEEEccHHHHHhhc
Q 019699 103 PKTIFIMGGG--EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSD--------PRLELVINDARAELESR 172 (337)
Q Consensus 103 p~~VLiIG~G--~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d--------~rv~v~~~D~~~~l~~~ 172 (337)
-++|.+||+| ++.++..+++. ..+|+++|.+++.++.+++......+.... .++++ ..|..+.+
T Consensus 4 ~~~I~vIGaG~mG~~iA~~l~~~--g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~--- 77 (311)
T PRK06130 4 IQNLAIIGAGTMGSGIAALFARK--GLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRM-EAGLAAAV--- 77 (311)
T ss_pred ccEEEEECCCHHHHHHHHHHHhC--CCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEE-eCCHHHHh---
Confidence 3689999999 44556666553 357999999999988877642210000000 11222 23333333
Q ss_pred CCceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCC
Q 019699 173 KESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG 220 (337)
Q Consensus 173 ~~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~ 220 (337)
+..|+||.-.+... -...+++.. +...++++-+++.++.
T Consensus 78 -~~aDlVi~av~~~~-------~~~~~v~~~-l~~~~~~~~ii~s~ts 116 (311)
T PRK06130 78 -SGADLVIEAVPEKL-------ELKRDVFAR-LDGLCDPDTIFATNTS 116 (311)
T ss_pred -ccCCEEEEeccCcH-------HHHHHHHHH-HHHhCCCCcEEEECCC
Confidence 35799998875321 113456666 5666666666655543
No 370
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=84.97 E-value=1.4 Score=41.38 Aligned_cols=102 Identities=22% Similarity=0.278 Sum_probs=61.5
Q ss_pred CeEEEEecchh--HHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhh------ccCCCCC--------CCeEEEEccHHH
Q 019699 104 KTIFIMGGGEG--STAREILRHKTVEKVVMCDIDEEVVEFCKSYLVV------NKEAFSD--------PRLELVINDARA 167 (337)
Q Consensus 104 ~~VLiIG~G~G--~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~------~~~~~~d--------~rv~v~~~D~~~ 167 (337)
++|.+||+|.- +++..+++. ..+|+++|.+++.++.+++.... ....+.. .++++ ..|..+
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~--G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~d~~~ 80 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFH--GFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITL-TTDLAE 80 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEE-eCCHHH
Confidence 68999999843 344444443 35899999999988877654311 0001110 23432 344333
Q ss_pred HHhhcCCceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCC
Q 019699 168 ELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG 220 (337)
Q Consensus 168 ~l~~~~~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~ 220 (337)
.+ +.-|+||.-.+... -...++|+. +...++++-+++.|.+
T Consensus 81 a~----~~aDlVieavpe~~-------~~k~~~~~~-l~~~~~~~~ii~sntS 121 (287)
T PRK08293 81 AV----KDADLVIEAVPEDP-------EIKGDFYEE-LAKVAPEKTIFATNSS 121 (287)
T ss_pred Hh----cCCCEEEEeccCCH-------HHHHHHHHH-HHhhCCCCCEEEECcc
Confidence 33 34699998876321 123567777 6778888888777754
No 371
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=84.92 E-value=1.8 Score=41.18 Aligned_cols=76 Identities=14% Similarity=0.243 Sum_probs=51.5
Q ss_pred CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhc-----CCc
Q 019699 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR-----KES 175 (337)
Q Consensus 101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~-----~~~ 175 (337)
....+|..||.|+..++..+.+.| .+|++|||++.-+.+-+-.+..... + |+ ++|...|+... ..-
T Consensus 62 g~ghrivtigSGGcn~L~ylsr~P--a~id~VDlN~ahiAln~lklaA~R~-L--p~----h~dl~r~~a~a~t~~n~~~ 132 (414)
T COG5379 62 GIGHRIVTIGSGGCNMLAYLSRAP--ARIDVVDLNPAHIALNRLKLAAFRH-L--PS----HEDLVRFFALAGTRRNSQA 132 (414)
T ss_pred CCCcEEEEecCCcchHHHHhhcCC--ceeEEEeCCHHHHHHHHHHHHHHhh-c--cc----chhhHHHhhhhcccccchh
Confidence 566789999999887888877754 6899999999998887665432210 0 11 23667776432 345
Q ss_pred eeEEEEeCCC
Q 019699 176 YDVIIGDLAD 185 (337)
Q Consensus 176 yDvIi~D~~d 185 (337)
||+-+..--+
T Consensus 133 yD~flae~ld 142 (414)
T COG5379 133 YDRFLAEHLD 142 (414)
T ss_pred hhcccccccc
Confidence 8887765443
No 372
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=84.85 E-value=5.5 Score=39.65 Aligned_cols=73 Identities=25% Similarity=0.268 Sum_probs=49.2
Q ss_pred CCCeEEEEecchhH--HHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHH--HHHhhc-CCce
Q 019699 102 NPKTIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDAR--AELESR-KESY 176 (337)
Q Consensus 102 ~p~~VLiIG~G~G~--~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~--~~l~~~-~~~y 176 (337)
..++++++|+|.=+ +++.+.++ ...++++|.|++.++..++.+ +.+.++.+|+. +.|++. -+++
T Consensus 230 ~~~~iiIiG~G~~g~~l~~~L~~~--~~~v~vid~~~~~~~~~~~~~---------~~~~~i~gd~~~~~~L~~~~~~~a 298 (453)
T PRK09496 230 PVKRVMIVGGGNIGYYLAKLLEKE--GYSVKLIERDPERAEELAEEL---------PNTLVLHGDGTDQELLEEEGIDEA 298 (453)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC--CCeEEEEECCHHHHHHHHHHC---------CCCeEEECCCCCHHHHHhcCCccC
Confidence 46899999997433 23333332 357999999999888766532 24678888884 344433 3679
Q ss_pred eEEEEeCCC
Q 019699 177 DVIIGDLAD 185 (337)
Q Consensus 177 DvIi~D~~d 185 (337)
|.|++-..+
T Consensus 299 ~~vi~~~~~ 307 (453)
T PRK09496 299 DAFIALTND 307 (453)
T ss_pred CEEEECCCC
Confidence 999876653
No 373
>PF06690 DUF1188: Protein of unknown function (DUF1188); InterPro: IPR009573 This family consists of several hypothetical archaeal proteins of around 260 residues in length, which seem to be specific to Methanobacterium, Methanococcus and Methanopyrus species. The function of this family is unknown.
Probab=84.66 E-value=2.5 Score=38.92 Aligned_cols=64 Identities=22% Similarity=0.300 Sum_probs=43.5
Q ss_pred CCCCeEEEEecc-hhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEE
Q 019699 101 PNPKTIFIMGGG-EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (337)
Q Consensus 101 ~~p~~VLiIG~G-~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvI 179 (337)
.+-+++|++|+= +|......+... .+|++|||.|.+.++. ++++++. .++......||+|
T Consensus 40 ~~~k~~lI~G~YltG~~iA~~L~~~--~eV~lvDI~p~lk~ll------------~~~i~F~-----~~~~~~~~~~DlI 100 (252)
T PF06690_consen 40 EEFKQALIFGAYLTGNFIASALSKK--CEVTLVDIHPHLKELL------------NENIKFM-----EFRNGLEGNPDLI 100 (252)
T ss_pred cccceEEEEEEEeehHHHHHHhccC--ceEEEEeCcHHHHHHh------------cCCCcee-----eccCCCCCCCCEE
Confidence 344699999984 555555555533 3899999999888765 2455544 3444445689998
Q ss_pred EEeCC
Q 019699 180 IGDLA 184 (337)
Q Consensus 180 i~D~~ 184 (337)
| |.+
T Consensus 101 I-D~T 104 (252)
T PF06690_consen 101 I-DTT 104 (252)
T ss_pred E-ECC
Confidence 8 776
No 374
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=84.64 E-value=13 Score=35.25 Aligned_cols=78 Identities=23% Similarity=0.319 Sum_probs=44.3
Q ss_pred CeEEEEecch-hHHHHHHHhcCCC-cEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEEE
Q 019699 104 KTIFIMGGGE-GSTAREILRHKTV-EKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG 181 (337)
Q Consensus 104 ~~VLiIG~G~-G~~~~~ll~~~~~-~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~ 181 (337)
++|.+||+|. |......+...+. .++..+|++++..+....-+.... .+.....++..+|... + ...|+||+
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~-~~~~~~~~i~~~~~~~-l----~~aDIVIi 74 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDAL-AFLPSPVKIKAGDYSD-C----KDADIVVI 74 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHh-hccCCCeEEEcCCHHH-h----CCCCEEEE
Confidence 4799999985 3333333333333 489999999887654333222110 0112334555555332 2 46999999
Q ss_pred eCCCCC
Q 019699 182 DLADPI 187 (337)
Q Consensus 182 D~~dp~ 187 (337)
-...|.
T Consensus 75 tag~~~ 80 (306)
T cd05291 75 TAGAPQ 80 (306)
T ss_pred ccCCCC
Confidence 887654
No 375
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=84.59 E-value=17 Score=35.00 Aligned_cols=78 Identities=19% Similarity=0.342 Sum_probs=44.5
Q ss_pred CCCeEEEEecch-hHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhh-ccCCCCCCCeEEEE-ccHHHHHhhcCCceeE
Q 019699 102 NPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVV-NKEAFSDPRLELVI-NDARAELESRKESYDV 178 (337)
Q Consensus 102 ~p~~VLiIG~G~-G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~-~~~~~~d~rv~v~~-~D~~~~l~~~~~~yDv 178 (337)
+.++|.+||+|. |.....++...+...+..+|++++..+ ++. +.. ....+.+...++.. +|- +-+ ..-|+
T Consensus 5 ~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~~~-~~~-ld~~~~~~~~~~~~~I~~~~d~-~~l----~~aDi 77 (321)
T PTZ00082 5 KRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQ-GKA-LDISHSNVIAGSNSKVIGTNNY-EDI----AGSDV 77 (321)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCchhh-HHH-HHHHhhhhccCCCeEEEECCCH-HHh----CCCCE
Confidence 346899999997 444444444444456999999998642 111 110 01112233456664 663 222 35799
Q ss_pred EEEeCCCC
Q 019699 179 IIGDLADP 186 (337)
Q Consensus 179 Ii~D~~dp 186 (337)
||.-...+
T Consensus 78 VI~tag~~ 85 (321)
T PTZ00082 78 VIVTAGLT 85 (321)
T ss_pred EEECCCCC
Confidence 99876544
No 376
>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]
Probab=84.56 E-value=9.5 Score=35.55 Aligned_cols=121 Identities=14% Similarity=0.225 Sum_probs=85.1
Q ss_pred EEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhc---CCceeEEEEeC
Q 019699 107 FIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR---KESYDVIIGDL 183 (337)
Q Consensus 107 LiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~---~~~yDvIi~D~ 183 (337)
|-.=.|+=-+++.+++- ..++...|+-|.=..+.++.|. .|.|+++..+||..-+... +++=-+|++|+
T Consensus 93 l~~YpGSP~lA~~llR~--qDRl~l~ELHp~D~~~L~~~f~------~d~~vrv~~~DG~~~l~a~LPP~erRglVLIDP 164 (279)
T COG2961 93 LRYYPGSPLLARQLLRE--QDRLVLTELHPSDAPLLRNNFA------GDRRVRVLRGDGFLALKAHLPPKERRGLVLIDP 164 (279)
T ss_pred cccCCCCHHHHHHHcch--hceeeeeecCccHHHHHHHHhC------CCcceEEEecCcHHHHhhhCCCCCcceEEEeCC
Confidence 77778888899998873 5789999999999999998886 3789999999998877653 46678999998
Q ss_pred CCCCCCCCCcCCch--HHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhh-cCcee
Q 019699 184 ADPIEGGPCYKLYT--KSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV-FKYVV 246 (337)
Q Consensus 184 ~dp~~~~p~~~L~t--~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~v-F~~v~ 246 (337)
+.... .-|. .+-++. ..++ -++|+++++. | ..+.+.++.+.+.+++. .+.+.
T Consensus 165 PfE~~-----~eY~rvv~~l~~-~~kR-f~~g~yaiWY--P--ik~r~~~~~f~~~L~~~~i~kiL 219 (279)
T COG2961 165 PFELK-----DEYQRVVEALAE-AYKR-FATGTYAIWY--P--IKDRRQIRRFLRALEALGIRKIL 219 (279)
T ss_pred Ccccc-----cHHHHHHHHHHH-HHHh-hcCceEEEEE--e--ecchHHHHHHHHHHhhcCcccee
Confidence 64321 1111 112222 1111 2589999985 2 34667788888888876 33433
No 377
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=84.52 E-value=2.6 Score=40.43 Aligned_cols=145 Identities=14% Similarity=0.185 Sum_probs=82.5
Q ss_pred EEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEEEeCC-
Q 019699 106 IFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLA- 184 (337)
Q Consensus 106 VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~D~~- 184 (337)
|+++-+|.|++..-+.+. +..-+.++|+|+..++.-+.+++. +++.+|..+.-...-...|+++..++
T Consensus 1 vidLF~G~GG~~~Gl~~a-G~~~~~a~e~~~~a~~ty~~N~~~----------~~~~~Di~~~~~~~~~~~dvl~gg~PC 69 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQA-GFKCVFASEIDKYAQKTYEANFGN----------KVPFGDITKISPSDIPDFDILLGGFPC 69 (315)
T ss_pred CEEEecCccHHHHHHHHc-CCeEEEEEeCCHHHHHHHHHhCCC----------CCCccChhhhhhhhCCCcCEEEecCCC
Confidence 578888888887766553 455567899999999998887642 34567776654332346899998876
Q ss_pred CCCC-CC-------CCcCCchHHHHHHHhccccCCCceEEEeCCCCCcC--CChhHHHHHHHHHhhhcCceeEEEeeccc
Q 019699 185 DPIE-GG-------PCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIF--SHTEVFSCIYNTLRQVFKYVVPYSAHIPS 254 (337)
Q Consensus 185 dp~~-~~-------p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~--~~~~~~~~i~~~l~~vF~~v~~~~~~vP~ 254 (337)
.+.. .+ +-..| -.+|++. + +.++|.=+++=|. +... .....+..+.+.|++.-=.+......-..
T Consensus 70 q~fS~ag~~~~~~d~r~~L-~~~~~r~-i-~~~~P~~~v~ENV--~~l~~~~~~~~~~~i~~~l~~~GY~v~~~~l~a~d 144 (315)
T TIGR00675 70 QPFSIAGKRKGFEDTRGTL-FFEIVRI-L-KEKKPKFFLLENV--KGLVSHDKGRTFKVIIETLEELGYKVYYKVLNAKD 144 (315)
T ss_pred cccchhcccCCCCCchhhH-HHHHHHH-H-hhcCCCEEEeecc--HHHHhcccchHHHHHHHHHHhCCCEEEEEEEcHHH
Confidence 1211 11 11122 2456664 4 4678875555454 2111 12345666777776542122222222223
Q ss_pred cC----CceEEEEEec
Q 019699 255 FA----DTWGWIMASD 266 (337)
Q Consensus 255 ~~----~~~~~~~as~ 266 (337)
|+ ..=.|++|++
T Consensus 145 yGvPQ~R~R~f~ia~r 160 (315)
T TIGR00675 145 FGVPQNRERIYIVGFR 160 (315)
T ss_pred CCCCCCccEEEEEEEe
Confidence 32 2245788876
No 378
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=84.39 E-value=2.3 Score=38.08 Aligned_cols=75 Identities=20% Similarity=0.286 Sum_probs=42.6
Q ss_pred HHhcCCCCCeEEEEecchhHH--HHHHHhcCCCcEEEEEECC--hHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhh
Q 019699 96 ALLHHPNPKTIFIMGGGEGST--AREILRHKTVEKVVMCDID--EEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES 171 (337)
Q Consensus 96 ~l~~~~~p~~VLiIG~G~G~~--~~~ll~~~~~~~v~~VEid--~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~ 171 (337)
|++..-+.++||+||+|.=+. ++.+++. ..+|++|+-+ +++.+++.+ .++++... .|...
T Consensus 3 Pl~l~l~~k~vLVIGgG~va~~ka~~Ll~~--ga~V~VIs~~~~~~l~~l~~~-----------~~i~~~~~---~~~~~ 66 (202)
T PRK06718 3 PLMIDLSNKRVVIVGGGKVAGRRAITLLKY--GAHIVVISPELTENLVKLVEE-----------GKIRWKQK---EFEPS 66 (202)
T ss_pred ceEEEcCCCEEEEECCCHHHHHHHHHHHHC--CCeEEEEcCCCCHHHHHHHhC-----------CCEEEEec---CCChh
Confidence 565666789999999986554 3455554 3688888532 333333322 23444322 22222
Q ss_pred cCCceeEEEEeCCCC
Q 019699 172 RKESYDVIIGDLADP 186 (337)
Q Consensus 172 ~~~~yDvIi~D~~dp 186 (337)
.-..+|+||+-..++
T Consensus 67 ~l~~adlViaaT~d~ 81 (202)
T PRK06718 67 DIVDAFLVIAATNDP 81 (202)
T ss_pred hcCCceEEEEcCCCH
Confidence 225689988876543
No 379
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=84.36 E-value=14 Score=35.38 Aligned_cols=77 Identities=19% Similarity=0.269 Sum_probs=45.1
Q ss_pred eEEEEecch-hHHHHH-HHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCC-CCeEEEEccHHHHHhhcCCceeEEEE
Q 019699 105 TIFIMGGGE-GSTARE-ILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSD-PRLELVINDARAELESRKESYDVIIG 181 (337)
Q Consensus 105 ~VLiIG~G~-G~~~~~-ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d-~rv~v~~~D~~~~l~~~~~~yDvIi~ 181 (337)
+|-+||+|. |..... ++...-..++..+|++++..+.-..-+.. ...+.. .++++..+|-. -+ +.-|+|++
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~-~~~~~~~~~~~i~~~~y~-~~----~~aDivvi 74 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHH-ATALTYSTNTKIRAGDYD-DC----ADADIIVI 74 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHh-hhccCCCCCEEEEECCHH-Hh----CCCCEEEE
Confidence 578999986 555433 44444346899999987654332222221 112222 35777777732 22 45899999
Q ss_pred eCCCCC
Q 019699 182 DLADPI 187 (337)
Q Consensus 182 D~~dp~ 187 (337)
-+-.|.
T Consensus 75 taG~~~ 80 (307)
T cd05290 75 TAGPSI 80 (307)
T ss_pred CCCCCC
Confidence 776554
No 380
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=84.35 E-value=34 Score=31.63 Aligned_cols=159 Identities=14% Similarity=0.179 Sum_probs=77.8
Q ss_pred HHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEEEeCCCCCCCCCCcCC
Q 019699 116 TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKL 195 (337)
Q Consensus 116 ~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~D~~dp~~~~p~~~L 195 (337)
+++.+.+.....+|.++|.++...+.|++.--. .-...+ .+.+ ..+|+||+-.+- -
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~~----------~~~~~~-~~~~----~~~DlvvlavP~---------~ 56 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALELGII----------DEASTD-IEAV----EDADLVVLAVPV---------S 56 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHHTTSS----------SEEESH-HHHG----GCCSEEEE-S-H---------H
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHHCCCe----------eeccCC-HhHh----cCCCEEEEcCCH---------H
Confidence 356666665568999999999999998764111 111222 3334 346999998751 1
Q ss_pred chHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhhcCceeEEEeeccccCC--------------ceEE
Q 019699 196 YTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSFAD--------------TWGW 261 (337)
Q Consensus 196 ~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~vF~~v~~~~~~vP~~~~--------------~~~~ 261 (337)
...++++. +...|+++.+++ -.++. .. .+.+.+++..|.-..|...=|.+|. .-.+
T Consensus 57 ~~~~~l~~-~~~~~~~~~iv~-Dv~Sv----K~----~~~~~~~~~~~~~~~~v~~HPM~G~e~~G~~~a~~~lf~g~~~ 126 (258)
T PF02153_consen 57 AIEDVLEE-IAPYLKPGAIVT-DVGSV----KA----PIVEAMERLLPEGVRFVGGHPMAGPEKSGPEAADADLFEGRNW 126 (258)
T ss_dssp HHHHHHHH-HHCGS-TTSEEE-E--S-----CH----HHHHHHHHHHTSSGEEEEEEESCSTSSSSGGG-TTTTTTTSEE
T ss_pred HHHHHHHH-hhhhcCCCcEEE-EeCCC----CH----HHHHHHHHhcCcccceeecCCCCCCccccchhhcccccCCCeE
Confidence 24577887 678888876654 55432 12 3344555555511112111133321 2345
Q ss_pred EEEecCCCC-CCHHHHHHHHHhccCCCceeeCHHHHHHhc----cCcHHHHHh
Q 019699 262 IMASDSPFT-LSAEELDMKVKKNIKGENRYLDGKTISSSS----TLSKAVRKS 309 (337)
Q Consensus 262 ~~as~~p~~-~~~~~l~~r~~~~~~~~l~yy~~~~h~~~f----~lP~~~~~~ 309 (337)
+++-....+ -..+.+.+ +-+.+....-+.+++-|-.++ .||-.+--.
T Consensus 127 il~p~~~~~~~~~~~~~~-l~~~~Ga~~~~~~~eeHD~~~A~vshlpH~~a~a 178 (258)
T PF02153_consen 127 ILCPGEDTDPEALELVEE-LWEALGARVVEMDAEEHDRIMAYVSHLPHLLASA 178 (258)
T ss_dssp EEEECTTS-HHHHHHHHH-HHHHCT-EEEE--HHHHHHHHHHHTHHHHHHHHH
T ss_pred EEeCCCCChHHHHHHHHH-HHHHCCCEEEEcCHHHHHHHHHHHHHHHHHHHHH
Confidence 555332111 01122222 223334466788999997765 455544433
No 381
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=84.22 E-value=6 Score=40.92 Aligned_cols=79 Identities=25% Similarity=0.430 Sum_probs=56.2
Q ss_pred CCCeEEEEecchhHHHHHHHhc---CCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHH--Hhh--cCC
Q 019699 102 NPKTIFIMGGGEGSTAREILRH---KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE--LES--RKE 174 (337)
Q Consensus 102 ~p~~VLiIG~G~G~~~~~ll~~---~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~--l~~--~~~ 174 (337)
..|+||+-|+| |+++.++.+. ...+++.+.|.|+.-+..-++.+... +.+.++..+++|.++. +.. .+-
T Consensus 249 ~gK~vLVTGag-GSiGsel~~qil~~~p~~i~l~~~~E~~~~~i~~el~~~---~~~~~~~~~igdVrD~~~~~~~~~~~ 324 (588)
T COG1086 249 TGKTVLVTGGG-GSIGSELCRQILKFNPKEIILFSRDEYKLYLIDMELREK---FPELKLRFYIGDVRDRDRVERAMEGH 324 (588)
T ss_pred CCCEEEEeCCC-CcHHHHHHHHHHhcCCCEEEEecCchHHHHHHHHHHHhh---CCCcceEEEecccccHHHHHHHHhcC
Confidence 45788887765 7776665543 34589999999999887766665432 2357899999999865 222 235
Q ss_pred ceeEEEEeCC
Q 019699 175 SYDVIIGDLA 184 (337)
Q Consensus 175 ~yDvIi~D~~ 184 (337)
+-|+|+.-+.
T Consensus 325 kvd~VfHAAA 334 (588)
T COG1086 325 KVDIVFHAAA 334 (588)
T ss_pred CCceEEEhhh
Confidence 6999999886
No 382
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=84.21 E-value=9.5 Score=36.13 Aligned_cols=98 Identities=20% Similarity=0.233 Sum_probs=56.5
Q ss_pred CCCCeEEEEecch-hHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhh-c-CCcee
Q 019699 101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-R-KESYD 177 (337)
Q Consensus 101 ~~p~~VLiIG~G~-G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~-~-~~~yD 177 (337)
....+||++|+|. |..+..+++..+..+|++++.+++-.+.++++ ... .-+.....+ .+-+.+ . ...+|
T Consensus 162 ~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~-ga~------~~i~~~~~~-~~~~~~~~~~~~~d 233 (339)
T cd08239 162 SGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKAL-GAD------FVINSGQDD-VQEIRELTSGAGAD 233 (339)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-CCC------EEEcCCcch-HHHHHHHhCCCCCC
Confidence 3478999998653 23345566766655599999999988888764 211 001111122 222222 2 24699
Q ss_pred EEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699 178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (337)
Q Consensus 178 vIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~ 219 (337)
+||--... + ..+.. ..+.|+++|.+++-.
T Consensus 234 ~vid~~g~-----~-------~~~~~-~~~~l~~~G~~v~~g 262 (339)
T cd08239 234 VAIECSGN-----T-------AARRL-ALEAVRPWGRLVLVG 262 (339)
T ss_pred EEEECCCC-----H-------HHHHH-HHHHhhcCCEEEEEc
Confidence 98843321 1 22233 356899999988653
No 383
>PRK08618 ornithine cyclodeaminase; Validated
Probab=84.10 E-value=28 Score=33.44 Aligned_cols=115 Identities=18% Similarity=0.281 Sum_probs=67.5
Q ss_pred CeEEEEEeCCCceE-EEEcCccccccCChhhHHHHHHhHHHhcCCCCCeEEEEecchhH--HHHHHHhcCCCcEEEEEEC
Q 019699 58 QDIALLDTKPFGKA-LVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGS--TAREILRHKTVEKVVMCDI 134 (337)
Q Consensus 58 q~I~V~~~~~~G~~-L~lDG~~q~~~~de~~Y~e~l~~~~l~~~~~p~~VLiIG~G~G~--~~~~ll~~~~~~~v~~VEi 134 (337)
+.|.+++... |+. ..+||...+.-+..- .-.++ .-.+..+.++++++||+|.=+ .+..++...+..+|.+++.
T Consensus 85 g~i~l~d~~t-G~p~a~~d~~~lT~~RTaa--~sala-~~~la~~~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r 160 (325)
T PRK08618 85 GTVILSDFET-GEVLAILDGTYLTQIRTGA--LSGVA-TKYLAREDAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSR 160 (325)
T ss_pred EEEEEEeCCC-CceEEEEccchhhhhhHHH--HHHHH-HHHhcCCCCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECC
Confidence 3577777765 554 467887766644321 11111 233445778999999998543 2334444456789999999
Q ss_pred ChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEEEeCCC
Q 019699 135 DEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLAD 185 (337)
Q Consensus 135 d~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~D~~d 185 (337)
+++-.+...+.+... + .-++. ...|..+.+ ...|+|++-.+.
T Consensus 161 ~~~~a~~~~~~~~~~---~-~~~~~-~~~~~~~~~----~~aDiVi~aT~s 202 (325)
T PRK08618 161 TFEKAYAFAQEIQSK---F-NTEIY-VVNSADEAI----EEADIIVTVTNA 202 (325)
T ss_pred CHHHHHHHHHHHHHh---c-CCcEE-EeCCHHHHH----hcCCEEEEccCC
Confidence 987665444433211 0 11222 346655555 358999987754
No 384
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=83.95 E-value=8.8 Score=35.93 Aligned_cols=96 Identities=20% Similarity=0.254 Sum_probs=59.1
Q ss_pred CCCCeEEEEec--chhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhh-cCCcee
Q 019699 101 PNPKTIFIMGG--GEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYD 177 (337)
Q Consensus 101 ~~p~~VLiIG~--G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~-~~~~yD 177 (337)
.+..+||+.|+ |-|..+..+++..+ .+|.++.-+++-.+.++++ +.. .-+.....|..+.+.. ..+.+|
T Consensus 142 ~~g~~vlI~ga~g~vG~~aiqlA~~~G-~~vi~~~~s~~~~~~l~~~-Ga~------~vi~~~~~~~~~~v~~~~~~gvd 213 (329)
T cd08294 142 KAGETVVVNGAAGAVGSLVGQIAKIKG-CKVIGCAGSDDKVAWLKEL-GFD------AVFNYKTVSLEEALKEAAPDGID 213 (329)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHc-CCC------EEEeCCCccHHHHHHHHCCCCcE
Confidence 45679999984 56667777888765 4788999888888888873 321 0011111233333332 235699
Q ss_pred EEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699 178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (337)
Q Consensus 178 vIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~ 218 (337)
+|+ |... + +.++. ..+.|+++|.++.-
T Consensus 214 ~vl-d~~g----~--------~~~~~-~~~~l~~~G~iv~~ 240 (329)
T cd08294 214 CYF-DNVG----G--------EFSST-VLSHMNDFGRVAVC 240 (329)
T ss_pred EEE-ECCC----H--------HHHHH-HHHhhccCCEEEEE
Confidence 888 5431 1 12344 46789999998754
No 385
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=83.95 E-value=8.8 Score=39.40 Aligned_cols=104 Identities=17% Similarity=0.255 Sum_probs=65.2
Q ss_pred CCCeEEEEecc--hhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhh------ccCCCC-------CCCeEEEEccHH
Q 019699 102 NPKTIFIMGGG--EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVV------NKEAFS-------DPRLELVINDAR 166 (337)
Q Consensus 102 ~p~~VLiIG~G--~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~------~~~~~~-------d~rv~v~~~D~~ 166 (337)
+.++|.+||+| +.+++..+++. ..+|+++|.+++.++.+++.... ..+.+. -.|++.. .|..
T Consensus 4 ~~~kV~VIGaG~MG~gIA~~la~a--G~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~-~~~~ 80 (503)
T TIGR02279 4 NVVTVAVIGAGAMGAGIAQVAASA--GHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPV-TDLH 80 (503)
T ss_pred CccEEEEECcCHHHHHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEe-CCHH
Confidence 45789999999 34566666664 36899999999999876554321 011110 0233332 3322
Q ss_pred HHHhhcCCceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCC
Q 019699 167 AELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGP 221 (337)
Q Consensus 167 ~~l~~~~~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~ 221 (337)
-+ ..-|+||.-.++.. -..+++|+. +.+.++++-+++.|+.+
T Consensus 81 -~l----~~aDlVIEav~E~~-------~vK~~vf~~-l~~~~~~~~IlasnTSt 122 (503)
T TIGR02279 81 -AL----ADAGLVIEAIVENL-------EVKKALFAQ-LEELCPADTIIASNTSS 122 (503)
T ss_pred -Hh----CCCCEEEEcCcCcH-------HHHHHHHHH-HHhhCCCCeEEEECCCC
Confidence 22 35799998877532 124567777 67888888888878754
No 386
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=83.91 E-value=1.9 Score=41.45 Aligned_cols=109 Identities=15% Similarity=0.200 Sum_probs=64.3
Q ss_pred CCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhh------------hh---ccCC---------------
Q 019699 103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYL------------VV---NKEA--------------- 152 (337)
Q Consensus 103 p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f------------~~---~~~~--------------- 152 (337)
+-++|+=|+|.|.++.+++..... +-+=|.+--|+=...=-+ |+ ..+.
T Consensus 151 ki~iLvPGaGlGRLa~dla~~G~~--~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD~ 228 (369)
T KOG2798|consen 151 KIRILVPGAGLGRLAYDLACLGFK--CQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPDI 228 (369)
T ss_pred CceEEecCCCchhHHHHHHHhccc--ccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCccc
Confidence 568999999999999999886533 333366554432211000 00 0000
Q ss_pred --C----CCCCeEEEEccHHHHHhhcC--CceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCC
Q 019699 153 --F----SDPRLELVINDARAELESRK--ESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGP 221 (337)
Q Consensus 153 --~----~d~rv~v~~~D~~~~l~~~~--~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~ 221 (337)
. .-..+.+..||..++..... +.||+|+...+-.. +... .|+++. +.+.|+|||+.+ |.|+
T Consensus 229 ~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDT----a~Ni--leYi~t-I~~iLk~GGvWi-NlGP 297 (369)
T KOG2798|consen 229 HPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDT----AHNI--LEYIDT-IYKILKPGGVWI-NLGP 297 (369)
T ss_pred cccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeec----hHHH--HHHHHH-HHHhccCCcEEE-eccc
Confidence 0 01123445677666554432 57999988866221 1222 388998 899999999875 7654
No 387
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=83.76 E-value=8.4 Score=36.43 Aligned_cols=98 Identities=15% Similarity=0.187 Sum_probs=57.0
Q ss_pred CCCCeEEEEecc-hhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhh--cCCcee
Q 019699 101 PNPKTIFIMGGG-EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES--RKESYD 177 (337)
Q Consensus 101 ~~p~~VLiIG~G-~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~--~~~~yD 177 (337)
.+..+||+.|+| .|..+..+++..+...+.+++.++.-.+.++++- . +.-+.....+..+.+.+ ..+.+|
T Consensus 166 ~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~g-~------~~vi~~~~~~~~~~i~~~~~~~~~d 238 (347)
T cd05278 166 KPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEAG-A------TDIINPKNGDIVEQILELTGGRGVD 238 (347)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhC-C------cEEEcCCcchHHHHHHHHcCCCCCc
Confidence 346789886654 2455666777665457888888888888777642 1 11111112233333433 125699
Q ss_pred EEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699 178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (337)
Q Consensus 178 vIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~ 218 (337)
+|+ |... + .+.++. ..+.|+++|.++.-
T Consensus 239 ~vl-d~~g----~-------~~~~~~-~~~~l~~~G~~v~~ 266 (347)
T cd05278 239 CVI-EAVG----F-------EETFEQ-AVKVVRPGGTIANV 266 (347)
T ss_pred EEE-EccC----C-------HHHHHH-HHHHhhcCCEEEEE
Confidence 887 4321 1 134454 56789999988753
No 388
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=83.75 E-value=38 Score=36.19 Aligned_cols=92 Identities=23% Similarity=0.231 Sum_probs=53.7
Q ss_pred CCeEEEEecch--hHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699 103 PKTIFIMGGGE--GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (337)
Q Consensus 103 p~~VLiIG~G~--G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi 180 (337)
-++|.+||+|. +.+++.+.+.....+|.++|.+++-++.++++ ... +. ...|..+.+ ...|+||
T Consensus 3 ~~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~~~-g~~-----~~----~~~~~~~~~----~~aDvVi 68 (735)
T PRK14806 3 FGRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELAVSL-GVI-----DR----GEEDLAEAV----SGADVIV 68 (735)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHHHC-CCC-----Cc----ccCCHHHHh----cCCCEEE
Confidence 36899999884 33445554432124699999999887776653 110 00 112323333 3579999
Q ss_pred EeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (337)
Q Consensus 181 ~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~ 219 (337)
+-.+.. ...+.++. ++..++++- +++..
T Consensus 69 lavp~~---------~~~~vl~~-l~~~~~~~~-ii~d~ 96 (735)
T PRK14806 69 LAVPVL---------AMEKVLAD-LKPLLSEHA-IVTDV 96 (735)
T ss_pred ECCCHH---------HHHHHHHH-HHHhcCCCc-EEEEc
Confidence 886521 23566676 677777654 44444
No 389
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=83.66 E-value=2.1 Score=42.86 Aligned_cols=54 Identities=15% Similarity=0.388 Sum_probs=41.5
Q ss_pred eEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEE
Q 019699 105 TIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI 162 (337)
Q Consensus 105 ~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~ 162 (337)
-||+||.|+|.+...+++.. ...|+++|.=..|+++|++-...+ ++ .++++++.
T Consensus 69 ~vLdigtGTGLLSmMAvrag-aD~vtA~EvfkPM~d~arkI~~kn--g~-SdkI~vIn 122 (636)
T KOG1501|consen 69 FVLDIGTGTGLLSMMAVRAG-ADSVTACEVFKPMVDLARKIMHKN--GM-SDKINVIN 122 (636)
T ss_pred EEEEccCCccHHHHHHHHhc-CCeEEeehhhchHHHHHHHHHhcC--CC-ccceeeec
Confidence 57899999999988887764 678999999999999999976433 22 23555554
No 390
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=83.60 E-value=38 Score=31.57 Aligned_cols=88 Identities=25% Similarity=0.214 Sum_probs=54.1
Q ss_pred eEEEEecch--hHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEEEe
Q 019699 105 TIFIMGGGE--GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGD 182 (337)
Q Consensus 105 ~VLiIG~G~--G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~D 182 (337)
+|.+||+|. |.+++.+.+. ..+|.++|.+++.++.+++.-. +.....+. +.+ ...|+||+-
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~--g~~V~~~d~~~~~~~~a~~~g~----------~~~~~~~~-~~~----~~aDlVila 64 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSL--GHTVYGVSRRESTCERAIERGL----------VDEASTDL-SLL----KDCDLVILA 64 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHCCC----------cccccCCH-hHh----cCCCEEEEc
Confidence 689999983 5566666654 2579999999988887765310 11111121 222 457999998
Q ss_pred CCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCC
Q 019699 183 LADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG 220 (337)
Q Consensus 183 ~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~ 220 (337)
.+... ..++++. +...++++- +++..+
T Consensus 65 vp~~~---------~~~~~~~-l~~~l~~~~-ii~d~~ 91 (279)
T PRK07417 65 LPIGL---------LLPPSEQ-LIPALPPEA-IVTDVG 91 (279)
T ss_pred CCHHH---------HHHHHHH-HHHhCCCCc-EEEeCc
Confidence 76321 2356676 667777664 445654
No 391
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=83.46 E-value=10 Score=35.73 Aligned_cols=97 Identities=20% Similarity=0.237 Sum_probs=58.6
Q ss_pred CCCCeEEEEec--chhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEE-ccHHHHHhhc-CCce
Q 019699 101 PNPKTIFIMGG--GEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI-NDARAELESR-KESY 176 (337)
Q Consensus 101 ~~p~~VLiIG~--G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~-~D~~~~l~~~-~~~y 176 (337)
.+..+||+.|+ |-|..+..+++..+ .+|.++.-+++-.+.++++ +.. .-+.... .+..+.++.. .+.+
T Consensus 137 ~~g~~VLI~ga~g~vG~~aiqlAk~~G-~~Vi~~~~s~~~~~~~~~l-Ga~------~vi~~~~~~~~~~~~~~~~~~gv 208 (325)
T TIGR02825 137 KGGETVMVNAAAGAVGSVVGQIAKLKG-CKVVGAAGSDEKVAYLKKL-GFD------VAFNYKTVKSLEETLKKASPDGY 208 (325)
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHc-CCC------EEEeccccccHHHHHHHhCCCCe
Confidence 45689999984 56777778888765 4788888888888888763 221 0001111 1223333332 3469
Q ss_pred eEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699 177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (337)
Q Consensus 177 DvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~ 219 (337)
|+|+ |.. +. +.+.. ..++|+++|.++.-.
T Consensus 209 dvv~-d~~-----G~-------~~~~~-~~~~l~~~G~iv~~G 237 (325)
T TIGR02825 209 DCYF-DNV-----GG-------EFSNT-VIGQMKKFGRIAICG 237 (325)
T ss_pred EEEE-ECC-----CH-------HHHHH-HHHHhCcCcEEEEec
Confidence 9988 543 11 11234 457899999998643
No 392
>PRK06223 malate dehydrogenase; Reviewed
Probab=83.35 E-value=16 Score=34.54 Aligned_cols=78 Identities=26% Similarity=0.292 Sum_probs=42.7
Q ss_pred CeEEEEecch-hHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEE-ccHHHHHhhcCCceeEEEE
Q 019699 104 KTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI-NDARAELESRKESYDVIIG 181 (337)
Q Consensus 104 ~~VLiIG~G~-G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~-~D~~~~l~~~~~~yDvIi~ 181 (337)
.+|.+||+|. |......+...+..+|..+|++++..+....-+... ........++.. +|- +-+ ..-|+||+
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~-~~~~~~~~~i~~~~d~-~~~----~~aDiVii 76 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEA-APVEGFDTKITGTNDY-EDI----AGSDVVVI 76 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhh-hhhcCCCcEEEeCCCH-HHH----CCCCEEEE
Confidence 5899999997 665555444333228999999998654321111110 011111234443 443 222 34699998
Q ss_pred eCCCCC
Q 019699 182 DLADPI 187 (337)
Q Consensus 182 D~~dp~ 187 (337)
-...|.
T Consensus 77 ~~~~p~ 82 (307)
T PRK06223 77 TAGVPR 82 (307)
T ss_pred CCCCCC
Confidence 775554
No 393
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=83.18 E-value=12 Score=37.02 Aligned_cols=103 Identities=19% Similarity=0.205 Sum_probs=59.5
Q ss_pred CCCeEEEEe--cchhHHHHHHHhcC--CCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEE----ccHHHHHhhc-
Q 019699 102 NPKTIFIMG--GGEGSTAREILRHK--TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI----NDARAELESR- 172 (337)
Q Consensus 102 ~p~~VLiIG--~G~G~~~~~ll~~~--~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~----~D~~~~l~~~- 172 (337)
...+||++| ++-|..+..+++.. +..+|++++.+++-++.+++.++.... .......++. .|..+.+.+.
T Consensus 175 ~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~-~~Ga~~~~i~~~~~~~~~~~v~~~t 253 (410)
T cd08238 175 PGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAA-SRGIELLYVNPATIDDLHATLMELT 253 (410)
T ss_pred CCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhcccccc-ccCceEEEECCCccccHHHHHHHHh
Confidence 347899997 44666777777764 235799999999999999986432110 0000111121 2344444432
Q ss_pred -CCceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699 173 -KESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (337)
Q Consensus 173 -~~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~ 218 (337)
...+|+|+..... + ..++. .-+.|+++|.+++.
T Consensus 254 ~g~g~D~vid~~g~-----~-------~~~~~-a~~~l~~~G~~v~~ 287 (410)
T cd08238 254 GGQGFDDVFVFVPV-----P-------ELVEE-ADTLLAPDGCLNFF 287 (410)
T ss_pred CCCCCCEEEEcCCC-----H-------HHHHH-HHHHhccCCeEEEE
Confidence 2469988865421 1 22333 45678988866544
No 394
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=82.76 E-value=13 Score=32.25 Aligned_cols=95 Identities=17% Similarity=0.205 Sum_probs=53.8
Q ss_pred CCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (337)
Q Consensus 101 ~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi 180 (337)
.+..+|+.||+=+-.....- ...+..++...|+|...-....+.|-... ++.| .++.+...++||+||
T Consensus 24 ~~~~~iaclstPsl~~~l~~-~~~~~~~~~Lle~D~RF~~~~~~~F~fyD--~~~p---------~~~~~~l~~~~d~vv 91 (162)
T PF10237_consen 24 LDDTRIACLSTPSLYEALKK-ESKPRIQSFLLEYDRRFEQFGGDEFVFYD--YNEP---------EELPEELKGKFDVVV 91 (162)
T ss_pred CCCCEEEEEeCcHHHHHHHh-hcCCCccEEEEeecchHHhcCCcceEECC--CCCh---------hhhhhhcCCCceEEE
Confidence 45689999998764443322 13456789999999977664433111110 0111 122222357899999
Q ss_pred EeCCCCCCCCCCcCCchHHHH----HHHhccccCCCceEEEe
Q 019699 181 GDLADPIEGGPCYKLYTKSFY----EFVVKPRLNPEGIFVTQ 218 (337)
Q Consensus 181 ~D~~dp~~~~p~~~L~t~ef~----~~~~~~~L~p~Gvlv~~ 218 (337)
+|++- .+.|.. +. ++..+++++.++.-
T Consensus 92 ~DPPF----------l~~ec~~k~a~t-i~~L~k~~~kii~~ 122 (162)
T PF10237_consen 92 IDPPF----------LSEECLTKTAET-IRLLLKPGGKIILC 122 (162)
T ss_pred ECCCC----------CCHHHHHHHHHH-HHHHhCccceEEEe
Confidence 99853 223333 33 45556777766643
No 395
>PLN02740 Alcohol dehydrogenase-like
Probab=82.71 E-value=13 Score=36.21 Aligned_cols=45 Identities=27% Similarity=0.319 Sum_probs=33.7
Q ss_pred CCCCeEEEEecch-hHHHHHHHhcCCCcEEEEEECChHHHHHHHhh
Q 019699 101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSY 145 (337)
Q Consensus 101 ~~p~~VLiIG~G~-G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~ 145 (337)
....+||++|+|. |..+..+++..+..+|++++.+++-.+.++++
T Consensus 197 ~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~~ 242 (381)
T PLN02740 197 QAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKEM 242 (381)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHc
Confidence 4567999998753 33445666766655799999999999999774
No 396
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=82.62 E-value=10 Score=35.97 Aligned_cols=86 Identities=14% Similarity=0.267 Sum_probs=50.2
Q ss_pred CCCeEEEEecchhHH-HHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEE-EccHHHHHhhcCCceeEE
Q 019699 102 NPKTIFIMGGGEGST-AREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELV-INDARAELESRKESYDVI 179 (337)
Q Consensus 102 ~p~~VLiIG~G~G~~-~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~-~~D~~~~l~~~~~~yDvI 179 (337)
.+++|++||.|.-+. +...++..+ .+|++++.++.-.+.++.. + .+.+ ..+..+.+ ..+|+|
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~G-a~V~v~~r~~~~~~~~~~~-G----------~~~~~~~~l~~~l----~~aDiV 214 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKALG-ANVTVGARKSAHLARITEM-G----------LSPFHLSELAEEV----GKIDII 214 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHc-C----------CeeecHHHHHHHh----CCCCEE
Confidence 578999999985433 333444444 5999999998766655542 1 1111 12222333 469999
Q ss_pred EEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEE
Q 019699 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFV 216 (337)
Q Consensus 180 i~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv 216 (337)
|.-.+ . .+.+.+.+ +.++++++++
T Consensus 215 I~t~p--~------~~i~~~~l-----~~~~~g~vII 238 (296)
T PRK08306 215 FNTIP--A------LVLTKEVL-----SKMPPEALII 238 (296)
T ss_pred EECCC--h------hhhhHHHH-----HcCCCCcEEE
Confidence 98542 1 23344433 4577877665
No 397
>COG4017 Uncharacterized protein conserved in archaea [Function unknown]
Probab=82.51 E-value=2.4 Score=37.90 Aligned_cols=66 Identities=23% Similarity=0.350 Sum_probs=45.1
Q ss_pred cCCCCCeEEEEecc-hhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCcee
Q 019699 99 HHPNPKTIFIMGGG-EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYD 177 (337)
Q Consensus 99 ~~~~p~~VLiIG~G-~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yD 177 (337)
..+++++||++|.- +|....+++.. ..+|+++||.|.+- .+++ +++++. +-+.-..+.||
T Consensus 41 ~~~E~~~vli~G~YltG~~~a~~Ls~--~~~vtv~Di~p~~r----~~lp--------~~v~Fr-----~~~~~~~G~~D 101 (254)
T COG4017 41 EGEEFKEVLIFGVYLTGNYTAQMLSK--ADKVTVVDIHPFMR----GFLP--------NNVKFR-----NLLKFIRGEVD 101 (254)
T ss_pred cccCcceEEEEEeeehhHHHHHHhcc--cceEEEecCCHHHH----hcCC--------CCccHh-----hhcCCCCCcee
Confidence 35789999999985 67777777764 57899999999653 3332 233332 22333458899
Q ss_pred EEEEeCC
Q 019699 178 VIIGDLA 184 (337)
Q Consensus 178 vIi~D~~ 184 (337)
+|+ |++
T Consensus 102 liv-DlT 107 (254)
T COG4017 102 LIV-DLT 107 (254)
T ss_pred EEE-ecc
Confidence 987 776
No 398
>PRK06141 ornithine cyclodeaminase; Validated
Probab=82.24 E-value=47 Score=31.70 Aligned_cols=113 Identities=17% Similarity=0.237 Sum_probs=65.2
Q ss_pred eEEEEEeCCCceE-EEEcCccccccCChhhHHHHHHhHHHhcCCCCCeEEEEecchhHHHH--HHHhcCCCcEEEEEECC
Q 019699 59 DIALLDTKPFGKA-LVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAR--EILRHKTVEKVVMCDID 135 (337)
Q Consensus 59 ~I~V~~~~~~G~~-L~lDG~~q~~~~de~~Y~e~l~~~~l~~~~~p~~VLiIG~G~G~~~~--~ll~~~~~~~v~~VEid 135 (337)
-|.+++... |+. ..+||...+.-+..-. -.+. .-.+..++.++|++||+|.=+... .++...+..+|.+...+
T Consensus 84 ~v~l~d~~t-G~p~ai~d~~~lT~~RTaa~--sala-~~~La~~~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs 159 (314)
T PRK06141 84 TYLLFDGRT-GEPLALVDGTELTARRTAAA--SALA-ASYLARKDASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRD 159 (314)
T ss_pred EEEEEECCC-CCEEEEEcCcchhcchhHHH--HHHH-HHHhCCCCCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCC
Confidence 466777665 554 4678887776554211 1111 123445788999999997544332 23333467899999999
Q ss_pred hHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEEEeCCC
Q 019699 136 EEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLAD 185 (337)
Q Consensus 136 ~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~D~~d 185 (337)
++-.+...+.+... ..++.. ..+..+-+ ...|+|++-.+.
T Consensus 160 ~~~a~~~a~~~~~~-----g~~~~~-~~~~~~av----~~aDIVi~aT~s 199 (314)
T PRK06141 160 PAKAEALAAELRAQ-----GFDAEV-VTDLEAAV----RQADIISCATLS 199 (314)
T ss_pred HHHHHHHHHHHHhc-----CCceEE-eCCHHHHH----hcCCEEEEeeCC
Confidence 87655444433221 112332 35554444 458999665543
No 399
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=82.13 E-value=9.8 Score=36.45 Aligned_cols=44 Identities=25% Similarity=0.428 Sum_probs=33.7
Q ss_pred CCCCeEEEEecch-hHHHHHHHhcCCCcEEEEEECChHHHHHHHhh
Q 019699 101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSY 145 (337)
Q Consensus 101 ~~p~~VLiIG~G~-G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~ 145 (337)
....+||++|+|. |..+..+++..+. +|++++.+++-.+.++++
T Consensus 165 ~~g~~VlV~G~G~vG~~a~~~a~~~G~-~vi~~~~~~~~~~~~~~~ 209 (349)
T TIGR03201 165 KKGDLVIVIGAGGVGGYMVQTAKAMGA-AVVAIDIDPEKLEMMKGF 209 (349)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHHh
Confidence 4568999999865 4556667776654 799999999999888764
No 400
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=81.90 E-value=25 Score=33.71 Aligned_cols=109 Identities=18% Similarity=0.240 Sum_probs=55.8
Q ss_pred CCCeEEEEecch-hHH-HHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEE-ccHHHHHhhcCCceeE
Q 019699 102 NPKTIFIMGGGE-GST-AREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI-NDARAELESRKESYDV 178 (337)
Q Consensus 102 ~p~~VLiIG~G~-G~~-~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~-~D~~~~l~~~~~~yDv 178 (337)
...+|.+||+|. |.. +..++...-..++..+|++++..+....-+... ..+... .+++. +|..+ + ..-|+
T Consensus 2 ~~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~-~~~~~~-~~v~~~~dy~~-~----~~adi 74 (312)
T cd05293 2 PRNKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHG-SAFLKN-PKIEADKDYSV-T----ANSKV 74 (312)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHh-hccCCC-CEEEECCCHHH-h----CCCCE
Confidence 346899999874 322 333333344468999999886544322222211 112222 25664 66443 3 45799
Q ss_pred EEEeCCCCCCCCCC-cCCch------HHHHHHHhccccCCCceEEEeC
Q 019699 179 IIGDLADPIEGGPC-YKLYT------KSFYEFVVKPRLNPEGIFVTQA 219 (337)
Q Consensus 179 Ii~D~~dp~~~~p~-~~L~t------~ef~~~~~~~~L~p~Gvlv~~~ 219 (337)
|++-+-.+...+.. ..|+. +++-+. +++ -+|+|++++-+
T Consensus 75 vvitaG~~~k~g~~R~dll~~N~~i~~~~~~~-i~~-~~p~~~vivvs 120 (312)
T cd05293 75 VIVTAGARQNEGESRLDLVQRNVDIFKGIIPK-LVK-YSPNAILLVVS 120 (312)
T ss_pred EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHH-HHH-hCCCcEEEEcc
Confidence 99876544421111 01111 223333 333 38899876543
No 401
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=81.89 E-value=2.5 Score=41.25 Aligned_cols=48 Identities=25% Similarity=0.352 Sum_probs=39.5
Q ss_pred CCCCCeEEEEecchhHHHHHHHhc----C----CCcEEEEEECChHHHHHHHhhhh
Q 019699 100 HPNPKTIFIMGGGEGSTAREILRH----K----TVEKVVMCDIDEEVVEFCKSYLV 147 (337)
Q Consensus 100 ~~~p~~VLiIG~G~G~~~~~ll~~----~----~~~~v~~VEid~~vi~~a~~~f~ 147 (337)
.|.|..+++||.|.|.+++-+++. . ...++..||++|+..+.-|+.+.
T Consensus 75 ~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~ 130 (370)
T COG1565 75 RPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLK 130 (370)
T ss_pred CCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHh
Confidence 366789999999999998777764 1 46789999999999988887764
No 402
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=81.75 E-value=14 Score=35.05 Aligned_cols=37 Identities=22% Similarity=0.302 Sum_probs=25.0
Q ss_pred CCCCeEEEEecchhHHHHHH-HhcCCCcEEEEEECChH
Q 019699 101 PNPKTIFIMGGGEGSTAREI-LRHKTVEKVVMCDIDEE 137 (337)
Q Consensus 101 ~~p~~VLiIG~G~G~~~~~l-l~~~~~~~v~~VEid~~ 137 (337)
...++||+||+|+-+-+... +...+..+|+++..+++
T Consensus 122 ~~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~~ 159 (288)
T PRK12749 122 IKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDE 159 (288)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCcc
Confidence 35689999999765433222 22246789999999864
No 403
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=81.53 E-value=20 Score=34.19 Aligned_cols=107 Identities=18% Similarity=0.277 Sum_probs=56.1
Q ss_pred eEEEEecch-hHHH-HHHHhcCCCcEEEEEECChHHHHH-HHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEEE
Q 019699 105 TIFIMGGGE-GSTA-REILRHKTVEKVVMCDIDEEVVEF-CKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG 181 (337)
Q Consensus 105 ~VLiIG~G~-G~~~-~~ll~~~~~~~v~~VEid~~vi~~-a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~ 181 (337)
+|.+||+|. |... ..++......++..+|++++..+. +...... ..+. +..++..+|-.. + ...|+|++
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~--~~~~-~~~~i~~~d~~~-l----~~aDiVii 73 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHG--TPFV-KPVRIYAGDYAD-C----KGADVVVI 73 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHcc--cccc-CCeEEeeCCHHH-h----CCCCEEEE
Confidence 689999986 4333 333343324689999999876652 3222111 1122 224555555322 2 45799999
Q ss_pred eCCCCCCCCCCc-CC--chHHHHHHHhc--cccCCCceEEEeC
Q 019699 182 DLADPIEGGPCY-KL--YTKSFYEFVVK--PRLNPEGIFVTQA 219 (337)
Q Consensus 182 D~~dp~~~~p~~-~L--~t~ef~~~~~~--~~L~p~Gvlv~~~ 219 (337)
-+..+...+... .| .+...++.++. +...|+|++++-.
T Consensus 74 ta~~~~~~~~~r~dl~~~n~~i~~~~~~~l~~~~~~giiiv~t 116 (308)
T cd05292 74 TAGANQKPGETRLDLLKRNVAIFKEIIPQILKYAPDAILLVVT 116 (308)
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 887665322110 01 12233333111 2366889877543
No 404
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=81.38 E-value=5.6 Score=38.33 Aligned_cols=124 Identities=19% Similarity=0.267 Sum_probs=79.4
Q ss_pred CCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcC-C-ceeEEE
Q 019699 103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRK-E-SYDVII 180 (337)
Q Consensus 103 p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~-~-~yDvIi 180 (337)
..+++++-+|.|++..-+... +..-+.++||||..++.-+.+|+. -.++..|..++..+.- . .+|+|+
T Consensus 3 ~~~~idLFsG~GG~~lGf~~a-gf~~~~a~Eid~~a~~ty~~n~~~---------~~~~~~di~~~~~~~~~~~~~Dvli 72 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEA-GFEIVFANEIDPPAVATYKANFPH---------GDIILGDIKELDGEALRKSDVDVLI 72 (328)
T ss_pred CceEEeeccCCchHHHHHHhc-CCeEEEEEecCHHHHHHHHHhCCC---------CceeechHhhcChhhccccCCCEEE
Confidence 357999999999888766664 356788999999999999888753 3456677776654432 2 789999
Q ss_pred EeCCC-CCC-CC-------CCcCCchHHHHHHHhccccCCCceEEEeCCCCCcCCC-hhHHHHHHHHHhhh
Q 019699 181 GDLAD-PIE-GG-------PCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSH-TEVFSCIYNTLRQV 241 (337)
Q Consensus 181 ~D~~d-p~~-~~-------p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~-~~~~~~i~~~l~~v 241 (337)
--++= +.. .+ +-..| ..+|.+. + ..++|.-+++=|. |++..+ ...++.+.+.|++.
T Consensus 73 gGpPCQ~FS~aG~r~~~~D~R~~L-~~~~~r~-I-~~~~P~~fv~ENV--~gl~~~~~~~~~~i~~~L~~~ 138 (328)
T COG0270 73 GGPPCQDFSIAGKRRGYDDPRGSL-FLEFIRL-I-EQLRPKFFVLENV--KGLLSSKGQTFDEIKKELEEL 138 (328)
T ss_pred eCCCCcchhhcCcccCCcCcccee-eHHHHHH-H-HhhCCCEEEEecC--chHHhcCchHHHHHHHHHHHc
Confidence 88762 111 11 21223 3577775 3 5788833333233 333322 34677777777766
No 405
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=81.36 E-value=2.5 Score=38.50 Aligned_cols=91 Identities=18% Similarity=0.184 Sum_probs=53.8
Q ss_pred CCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHH-Hh-hcCCceeEEE
Q 019699 103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE-LE-SRKESYDVII 180 (337)
Q Consensus 103 p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~-l~-~~~~~yDvIi 180 (337)
+-++|+||+=+...... . .+.-.|+.+|+++.- | .|...|..+. +. ...++||+|.
T Consensus 52 ~lrlLEVGals~~N~~s--~-~~~fdvt~IDLns~~-----------------~--~I~qqDFm~rplp~~~~e~FdvIs 109 (219)
T PF11968_consen 52 KLRLLEVGALSTDNACS--T-SGWFDVTRIDLNSQH-----------------P--GILQQDFMERPLPKNESEKFDVIS 109 (219)
T ss_pred cceEEeecccCCCCccc--c-cCceeeEEeecCCCC-----------------C--CceeeccccCCCCCCcccceeEEE
Confidence 46999999975443332 2 234569999997722 2 2334443332 21 1357899998
Q ss_pred EeCCCCCCCCCCcCCchHHHHHHHhccccCCCce-----EEEeC
Q 019699 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGI-----FVTQA 219 (337)
Q Consensus 181 ~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gv-----lv~~~ 219 (337)
+.+--.. -| ..--.-+..+. +.+.|+|+|. +.+-.
T Consensus 110 ~SLVLNf--VP-~p~~RG~Ml~r-~~~fL~~~g~~~~~~LFlVl 149 (219)
T PF11968_consen 110 LSLVLNF--VP-DPKQRGEMLRR-AHKFLKPPGLSLFPSLFLVL 149 (219)
T ss_pred EEEEEee--CC-CHHHHHHHHHH-HHHHhCCCCccCcceEEEEe
Confidence 8874111 11 11223467777 7899999999 65544
No 406
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=81.34 E-value=3 Score=41.00 Aligned_cols=104 Identities=18% Similarity=0.217 Sum_probs=68.7
Q ss_pred CCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE-
Q 019699 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII- 180 (337)
Q Consensus 102 ~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi- 180 (337)
++.+++++|+|-|...+++.... .+.++.+++++.-+..+....... .. +.+..+.+.|..+-. ..+..||.+-
T Consensus 110 ~~~~~~~~~~g~~~~~~~i~~f~-~~~~~Gl~~n~~e~~~~~~~~~~~--~l-~~k~~~~~~~~~~~~-fedn~fd~v~~ 184 (364)
T KOG1269|consen 110 PGSKVLDVGTGVGGPSRYIAVFK-KAGVVGLDNNAYEAFRANELAKKA--YL-DNKCNFVVADFGKMP-FEDNTFDGVRF 184 (364)
T ss_pred ccccccccCcCcCchhHHHHHhc-cCCccCCCcCHHHHHHHHHHHHHH--Hh-hhhcceehhhhhcCC-CCccccCcEEE
Confidence 34589999999999999988764 578888888887776666553211 11 233344666543321 2357799874
Q ss_pred EeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (337)
Q Consensus 181 ~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~ 218 (337)
+|..-. .| .....|+. +.+.++|||+++..
T Consensus 185 ld~~~~---~~----~~~~~y~E-i~rv~kpGG~~i~~ 214 (364)
T KOG1269|consen 185 LEVVCH---AP----DLEKVYAE-IYRVLKPGGLFIVK 214 (364)
T ss_pred Eeeccc---CC----cHHHHHHH-HhcccCCCceEEeH
Confidence 455422 12 23568888 78999999999863
No 407
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=81.30 E-value=9.8 Score=35.64 Aligned_cols=98 Identities=21% Similarity=0.324 Sum_probs=58.8
Q ss_pred CCCCeEEEEecc-hhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhh-cCCceeE
Q 019699 101 PNPKTIFIMGGG-EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDV 178 (337)
Q Consensus 101 ~~p~~VLiIG~G-~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~-~~~~yDv 178 (337)
....+||+.|+| .|..+.++++..+ .+|++++.+++..+.++++ +.. .-+.....+..+.++. ..+.+|+
T Consensus 164 ~~~~~vli~g~g~vG~~~~~la~~~G-~~V~~~~~s~~~~~~~~~~-g~~------~~~~~~~~~~~~~~~~~~~~~~D~ 235 (338)
T cd08254 164 KPGETVLVIGLGGLGLNAVQIAKAMG-AAVIAVDIKEEKLELAKEL-GAD------EVLNSLDDSPKDKKAAGLGGGFDV 235 (338)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcC-CEEEEEcCCHHHHHHHHHh-CCC------EEEcCCCcCHHHHHHHhcCCCceE
Confidence 446799998765 3666777777664 5699999999988888663 211 0011111122222322 2467998
Q ss_pred EEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (337)
Q Consensus 179 Ii~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~ 219 (337)
++.-.. . .+.++. +.+.|+++|.++.-.
T Consensus 236 vid~~g------~------~~~~~~-~~~~l~~~G~~v~~g 263 (338)
T cd08254 236 IFDFVG------T------QPTFED-AQKAVKPGGRIVVVG 263 (338)
T ss_pred EEECCC------C------HHHHHH-HHHHhhcCCEEEEEC
Confidence 774321 1 123455 568899999988653
No 408
>PLN02256 arogenate dehydrogenase
Probab=81.04 E-value=52 Score=31.38 Aligned_cols=169 Identities=12% Similarity=0.052 Sum_probs=86.5
Q ss_pred CCCCeEEEEecc--hhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeE
Q 019699 101 PNPKTIFIMGGG--EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV 178 (337)
Q Consensus 101 ~~p~~VLiIG~G--~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDv 178 (337)
+...+|.+||+| +|.+++.+.+. + .+|.+++.++. .+.++++ .+.. ..|..+.+. ...|+
T Consensus 34 ~~~~kI~IIG~G~mG~slA~~L~~~-G-~~V~~~d~~~~-~~~a~~~-----------gv~~-~~~~~e~~~---~~aDv 95 (304)
T PLN02256 34 SRKLKIGIVGFGNFGQFLAKTFVKQ-G-HTVLATSRSDY-SDIAAEL-----------GVSF-FRDPDDFCE---EHPDV 95 (304)
T ss_pred CCCCEEEEEeeCHHHHHHHHHHHhC-C-CEEEEEECccH-HHHHHHc-----------CCee-eCCHHHHhh---CCCCE
Confidence 456799999988 34455555543 2 57999999874 3444332 1111 344444432 34799
Q ss_pred EEEeCCCCCCCCCCcCCchHHHHHHHh-ccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhhcCceeEEEeeccccCC
Q 019699 179 IIGDLADPIEGGPCYKLYTKSFYEFVV-KPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSFAD 257 (337)
Q Consensus 179 Ii~D~~dp~~~~p~~~L~t~ef~~~~~-~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~vF~~v~~~~~~vP~~~~ 257 (337)
||+-.+.. ...++++. + ...++++. +++..++. + ..+.+.+++.++.-..|...-|.++.
T Consensus 96 Vilavp~~---------~~~~vl~~-l~~~~l~~~~-iviDv~Sv-----K---~~~~~~~~~~l~~~~~~V~~HPmaG~ 156 (304)
T PLN02256 96 VLLCTSIL---------STEAVLRS-LPLQRLKRST-LFVDVLSV-----K---EFPKNLLLQVLPEEFDILCTHPMFGP 156 (304)
T ss_pred EEEecCHH---------HHHHHHHh-hhhhccCCCC-EEEecCCc-----h---HHHHHHHHHhCCCCCeEEecCCCCCC
Confidence 99976521 13455665 4 34577765 45565431 1 23455677666543234334455532
Q ss_pred c--------eEEEEEecC--CCCCCHHHH--HHHHHhccCCCceeeCHHHHHHhccCcHHH
Q 019699 258 T--------WGWIMASDS--PFTLSAEEL--DMKVKKNIKGENRYLDGKTISSSSTLSKAV 306 (337)
Q Consensus 258 ~--------~~~~~as~~--p~~~~~~~l--~~r~~~~~~~~l~yy~~~~h~~~f~lP~~~ 306 (337)
. -.++++... |...+.+.+ .+++-+.+....-..+++-|-..++.-.++
T Consensus 157 e~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~l~~~lGa~v~~~~~eeHD~~vA~iShL 217 (304)
T PLN02256 157 ESGKGGWAGLPFVYDKVRIGDEGEREARCERFLDIFEEEGCRMVEMSCEEHDRYAAGSQFI 217 (304)
T ss_pred CCCccccCCCeEEEecceecCCCCCHHHHHHHHHHHHHCCCEEEEeCHHHHhHHHHhhhhH
Confidence 1 112222110 111122221 122333344577889999998766543333
No 409
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=80.92 E-value=12 Score=35.41 Aligned_cols=96 Identities=17% Similarity=0.273 Sum_probs=56.9
Q ss_pred CCCeEEEEecch-hHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699 102 NPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (337)
Q Consensus 102 ~p~~VLiIG~G~-G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi 180 (337)
+..+||+.|+|+ |..+..+++..+..++++++.++...+.++++- .. ..++ ....+..... .....+|+|+
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~g-~~-~vi~-----~~~~~~~~~~-~~~~~vd~vl 236 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAMG-AD-ETVN-----LARDPLAAYA-ADKGDFDVVF 236 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcC-CC-EEEc-----CCchhhhhhh-ccCCCccEEE
Confidence 568999987765 556667777765557999999988888877642 11 0000 0001112222 1234599987
Q ss_pred EeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (337)
Q Consensus 181 ~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~ 218 (337)
.-.. + ...++. +.+.|+++|.++.-
T Consensus 237 d~~g-----~-------~~~~~~-~~~~L~~~G~~v~~ 261 (339)
T cd08232 237 EASG-----A-------PAALAS-ALRVVRPGGTVVQV 261 (339)
T ss_pred ECCC-----C-------HHHHHH-HHHHHhcCCEEEEE
Confidence 5332 1 123344 56789999998754
No 410
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=80.76 E-value=17 Score=30.23 Aligned_cols=76 Identities=21% Similarity=0.280 Sum_probs=44.4
Q ss_pred CeEEEEecchh---HHHHHHHhcCCCcEEEEEECC--hHHHHHHHhhhhhccCCCCCCCeEEEEccHH------HH---H
Q 019699 104 KTIFIMGGGEG---STAREILRHKTVEKVVMCDID--EEVVEFCKSYLVVNKEAFSDPRLELVINDAR------AE---L 169 (337)
Q Consensus 104 ~~VLiIG~G~G---~~~~~ll~~~~~~~v~~VEid--~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~------~~---l 169 (337)
|.||+.|+++| .+++.++++ +..+|..+.-+ .+-.+...+.+... ..++.++..|.. .. +
T Consensus 1 k~~lItGa~~giG~~~a~~l~~~-g~~~v~~~~r~~~~~~~~~l~~~l~~~-----~~~~~~~~~D~~~~~~~~~~~~~~ 74 (167)
T PF00106_consen 1 KTVLITGASSGIGRALARALARR-GARVVILTSRSEDSEGAQELIQELKAP-----GAKITFIECDLSDPESIRALIEEV 74 (167)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHT-TTEEEEEEESSCHHHHHHHHHHHHHHT-----TSEEEEEESETTSHHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhc-CceEEEEeeeccccccccccccccccc-----cccccccccccccccccccccccc
Confidence 46788888644 234455554 45688888888 33333332222221 367788877742 22 2
Q ss_pred hhcCCceeEEEEeCCC
Q 019699 170 ESRKESYDVIIGDLAD 185 (337)
Q Consensus 170 ~~~~~~yDvIi~D~~d 185 (337)
.......|++|..+..
T Consensus 75 ~~~~~~ld~li~~ag~ 90 (167)
T PF00106_consen 75 IKRFGPLDILINNAGI 90 (167)
T ss_dssp HHHHSSESEEEEECSC
T ss_pred cccccccccccccccc
Confidence 2234679999988764
No 411
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=80.70 E-value=29 Score=33.53 Aligned_cols=143 Identities=12% Similarity=0.059 Sum_probs=75.5
Q ss_pred CCCCeEEEEecchhHHH--HHHHhcCCCcEEEEEECChHHHHHHHhhhh---hccCCCC-CCCeEEEEccHHHHHhhcCC
Q 019699 101 PNPKTIFIMGGGEGSTA--REILRHKTVEKVVMCDIDEEVVEFCKSYLV---VNKEAFS-DPRLELVINDARAELESRKE 174 (337)
Q Consensus 101 ~~p~~VLiIG~G~G~~~--~~ll~~~~~~~v~~VEid~~vi~~a~~~f~---~~~~~~~-d~rv~v~~~D~~~~l~~~~~ 174 (337)
....+|.+||+|.-+.+ ..+.+ .+ .++.+..+++.++..++.-. ....... .+++++ ..|..+-+ +
T Consensus 5 ~~~mkI~IiGaGa~G~alA~~La~-~g--~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~-t~d~~~a~----~ 76 (341)
T PRK12439 5 KREPKVVVLGGGSWGTTVASICAR-RG--PTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRA-TTDFAEAA----N 76 (341)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHH-CC--CEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEE-ECCHHHHH----h
Confidence 44568999999965543 33333 22 46777799998887775321 1000000 123332 34433333 4
Q ss_pred ceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCc-eEEEeCCCCCcCCChhHHHHHHHHHhhhcCceeEEEeecc
Q 019699 175 SYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEG-IFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIP 253 (337)
Q Consensus 175 ~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~G-vlv~~~~~p~~~~~~~~~~~i~~~l~~vF~~v~~~~~~vP 253 (337)
..|+||+-.+. .+.++.++. ++..|+++. ++.++-|-. .... ..+.+.++++++........-|
T Consensus 77 ~aDlVilavps---------~~~~~vl~~-i~~~l~~~~~vIsl~kGi~--~~t~---~~~se~i~~~l~~~~~~~l~GP 141 (341)
T PRK12439 77 CADVVVMGVPS---------HGFRGVLTE-LAKELRPWVPVVSLVKGLE--QGTN---MRMSQIIEEVLPGHPAGILAGP 141 (341)
T ss_pred cCCEEEEEeCH---------HHHHHHHHH-HHhhcCCCCEEEEEEeCCc--CCCC---CcHHHHHHHHcCCCCeEEEECC
Confidence 57999988652 134677787 788888876 334444421 1112 2233455556654333334456
Q ss_pred ccC-----Cc-eEEEEEec
Q 019699 254 SFA-----DT-WGWIMASD 266 (337)
Q Consensus 254 ~~~-----~~-~~~~~as~ 266 (337)
.+. +. ...++++.
T Consensus 142 ~~a~ev~~g~~t~~via~~ 160 (341)
T PRK12439 142 NIAREVAEGYAAAAVLAMP 160 (341)
T ss_pred CHHHHHHcCCCeEEEEEeC
Confidence 662 11 23566775
No 412
>PRK13699 putative methylase; Provisional
Probab=80.67 E-value=5.3 Score=36.52 Aligned_cols=46 Identities=15% Similarity=0.090 Sum_probs=39.3
Q ss_pred CCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhh
Q 019699 100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLV 147 (337)
Q Consensus 100 ~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~ 147 (337)
..+..-||+--+|+|+++.++.+. ..+..++||+++..+.+++.+.
T Consensus 161 s~~g~~vlDpf~Gsgtt~~aa~~~--~r~~~g~e~~~~y~~~~~~r~~ 206 (227)
T PRK13699 161 THPNAIVLDPFAGSGSTCVAALQS--GRRYIGIELLEQYHRAGQQRLA 206 (227)
T ss_pred CCCCCEEEeCCCCCCHHHHHHHHc--CCCEEEEecCHHHHHHHHHHHH
Confidence 356678999999999999988875 3679999999999999988764
No 413
>PRK06545 prephenate dehydrogenase; Validated
Probab=80.66 E-value=58 Score=31.67 Aligned_cols=92 Identities=22% Similarity=0.315 Sum_probs=50.8
Q ss_pred CeEEEEecc--hhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEEE
Q 019699 104 KTIFIMGGG--EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG 181 (337)
Q Consensus 104 ~~VLiIG~G--~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~ 181 (337)
++|.+||+| +|.+++.+.+.. ..+.+++.|+.-.+.++.. .. +.. + -...|..+. -...|+||+
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~G--~~v~i~~~~~~~~~~~~a~-~~--~~~-~----~~~~~~~~~----~~~aDlVil 66 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAAG--PDVFIIGYDPSAAQLARAL-GF--GVI-D----ELAADLQRA----AAEADLIVL 66 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhcC--CCeEEEEeCCCHHHHHHHh-cC--CCC-c----ccccCHHHH----hcCCCEEEE
Confidence 479999998 456666666543 3566777777655554421 10 000 1 011222222 246899999
Q ss_pred eCCCCCCCCCCcCCchHHHHHHHhcc-ccCCCceEEEeCC
Q 019699 182 DLADPIEGGPCYKLYTKSFYEFVVKP-RLNPEGIFVTQAG 220 (337)
Q Consensus 182 D~~dp~~~~p~~~L~t~ef~~~~~~~-~L~p~Gvlv~~~~ 220 (337)
-.+.. ...++++. +.. .++++ .+++..+
T Consensus 67 avP~~---------~~~~vl~~-l~~~~l~~~-~ivtDv~ 95 (359)
T PRK06545 67 AVPVD---------ATAALLAE-LADLELKPG-VIVTDVG 95 (359)
T ss_pred eCCHH---------HHHHHHHH-HhhcCCCCC-cEEEeCc
Confidence 87531 13567777 565 47776 4555554
No 414
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=80.33 E-value=18 Score=36.18 Aligned_cols=99 Identities=22% Similarity=0.305 Sum_probs=54.8
Q ss_pred CCCCeEEEEecchhH-H-HHHHHhcCCCcEEEEEECChHHHH-HHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCcee
Q 019699 101 PNPKTIFIMGGGEGS-T-AREILRHKTVEKVVMCDIDEEVVE-FCKSYLVVNKEAFSDPRLELVINDARAELESRKESYD 177 (337)
Q Consensus 101 ~~p~~VLiIG~G~G~-~-~~~ll~~~~~~~v~~VEid~~vi~-~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yD 177 (337)
...++|+++|+|.=+ . ++.+.. .+..+|++++.+++-.+ +++++ +. . .+-..|..+.+ ..+|
T Consensus 178 l~~~~VlViGaG~iG~~~a~~L~~-~G~~~V~v~~rs~~ra~~la~~~-g~-------~--~i~~~~l~~~l----~~aD 242 (417)
T TIGR01035 178 LKGKKALLIGAGEMGELVAKHLLR-KGVGKILIANRTYERAEDLAKEL-GG-------E--AVKFEDLEEYL----AEAD 242 (417)
T ss_pred ccCCEEEEECChHHHHHHHHHHHH-CCCCEEEEEeCCHHHHHHHHHHc-CC-------e--EeeHHHHHHHH----hhCC
Confidence 356899999986432 2 233333 45678999999986543 44432 11 0 11113333333 3699
Q ss_pred EEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCCC
Q 019699 178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPA 222 (337)
Q Consensus 178 vIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p 222 (337)
+||.-...+ ..+.+.+.++. +. .-++.+.+++....|
T Consensus 243 vVi~aT~s~------~~ii~~e~l~~-~~-~~~~~~~~viDla~P 279 (417)
T TIGR01035 243 IVISSTGAP------HPIVSKEDVER-AL-RERTRPLFIIDIAVP 279 (417)
T ss_pred EEEECCCCC------CceEcHHHHHH-HH-hcCCCCeEEEEeCCC
Confidence 999876533 24566776665 21 112345666665443
No 415
>PRK08507 prephenate dehydrogenase; Validated
Probab=80.07 E-value=37 Score=31.52 Aligned_cols=89 Identities=19% Similarity=0.161 Sum_probs=52.8
Q ss_pred eEEEEecch--hHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEEEe
Q 019699 105 TIFIMGGGE--GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGD 182 (337)
Q Consensus 105 ~VLiIG~G~--G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~D 182 (337)
+|.+||+|. +.+++.+.+.....+|.++|.+++-.+.+++. +.. + ...+..+ +. + .|+||+-
T Consensus 2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~-g~~-----~-----~~~~~~~-~~---~-aD~Vila 65 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALEL-GLV-----D-----EIVSFEE-LK---K-CDVIFLA 65 (275)
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHC-CCC-----c-----ccCCHHH-Hh---c-CCEEEEe
Confidence 689999984 55666666543234799999999887766542 110 0 0112222 21 2 7999998
Q ss_pred CCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCC
Q 019699 183 LADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGP 221 (337)
Q Consensus 183 ~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~ 221 (337)
.+... ..+.+.. +.. ++++.+++ ..++
T Consensus 66 vp~~~---------~~~~~~~-l~~-l~~~~iv~-d~gs 92 (275)
T PRK08507 66 IPVDA---------IIEILPK-LLD-IKENTTII-DLGS 92 (275)
T ss_pred CcHHH---------HHHHHHH-Hhc-cCCCCEEE-ECcc
Confidence 76321 2455666 566 77776554 5543
No 416
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=80.05 E-value=20 Score=32.69 Aligned_cols=76 Identities=24% Similarity=0.329 Sum_probs=51.8
Q ss_pred EEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEE-----ccHHHHHhhcCCceeEEEEeCCCCCCCCCCcCCchHHHHH
Q 019699 128 KVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI-----NDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYE 202 (337)
Q Consensus 128 ~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~-----~D~~~~l~~~~~~yDvIi~D~~dp~~~~p~~~L~t~ef~~ 202 (337)
+|-.||=|+.|.++-++|.... |.++++- +.|+..++... -|+|++|.+-|...| .+|+.
T Consensus 2 ~VLIiEDD~mVaeih~~yv~~~------~gF~~vg~A~~~~ea~~~i~~~~--pDLILLDiYmPd~~G-------i~lL~ 66 (224)
T COG4565 2 NVLIIEDDPMVAEIHRRYVKQI------PGFSVVGTAGTLEEAKMIIEEFK--PDLILLDIYMPDGNG-------IELLP 66 (224)
T ss_pred cEEEEcCchHHHHHHHHHHHhC------CCceEEEeeccHHHHHHHHHhhC--CCEEEEeeccCCCcc-------HHHHH
Confidence 4778999999999999998643 4454432 34555665433 399999999776333 36777
Q ss_pred HHhccccCCCceEEEeC
Q 019699 203 FVVKPRLNPEGIFVTQA 219 (337)
Q Consensus 203 ~~~~~~L~p~Gvlv~~~ 219 (337)
. ++..=-+..++++.+
T Consensus 67 ~-ir~~~~~~DVI~iTA 82 (224)
T COG4565 67 E-LRSQHYPVDVIVITA 82 (224)
T ss_pred H-HHhcCCCCCEEEEec
Confidence 7 565555666776654
No 417
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=79.79 E-value=27 Score=32.94 Aligned_cols=75 Identities=16% Similarity=0.189 Sum_probs=42.4
Q ss_pred CCCCeEEEEecchhHH-HHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEE-ccHHHHHhhcCCceeE
Q 019699 101 PNPKTIFIMGGGEGST-AREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI-NDARAELESRKESYDV 178 (337)
Q Consensus 101 ~~p~~VLiIG~G~G~~-~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~-~D~~~~l~~~~~~yDv 178 (337)
...++||+||+|+-+- ....+...+..+|++++.+++-.+...+.+... .+...+.. .+..+. -..+|+
T Consensus 125 ~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~-----~~~~~~~~~~~~~~~----~~~aDi 195 (284)
T PRK12549 125 ASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNAR-----FPAARATAGSDLAAA----LAAADG 195 (284)
T ss_pred ccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhh-----CCCeEEEeccchHhh----hCCCCE
Confidence 4568999999986433 223333345778999999976555443333211 12233332 222111 245899
Q ss_pred EEEeCC
Q 019699 179 IIGDLA 184 (337)
Q Consensus 179 Ii~D~~ 184 (337)
||.-.+
T Consensus 196 VInaTp 201 (284)
T PRK12549 196 LVHATP 201 (284)
T ss_pred EEECCc
Confidence 887765
No 418
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=79.70 E-value=8.7 Score=39.75 Aligned_cols=93 Identities=11% Similarity=0.159 Sum_probs=58.3
Q ss_pred CeEEEEecchhH--HHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHH--HHhhcC-CceeE
Q 019699 104 KTIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA--ELESRK-ESYDV 178 (337)
Q Consensus 104 ~~VLiIG~G~G~--~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~--~l~~~~-~~yDv 178 (337)
.+++++|+|.=+ +++.+.++ ..+++++|.|++.++.+++. ..+++.+|+.+ .+++.+ ++.|.
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~--g~~vvvId~d~~~~~~~~~~-----------g~~~i~GD~~~~~~L~~a~i~~a~~ 484 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAA--GIPLVVIETSRTRVDELRER-----------GIRAVLGNAANEEIMQLAHLDCARW 484 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHC--CCCEEEEECCHHHHHHHHHC-----------CCeEEEcCCCCHHHHHhcCccccCE
Confidence 688999998532 23444333 35799999999998888752 36788888864 344433 68998
Q ss_pred EEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (337)
Q Consensus 179 Ii~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~ 219 (337)
+++...+... . ..... +.+.++|+-.++...
T Consensus 485 viv~~~~~~~-----~---~~iv~--~~~~~~~~~~iiar~ 515 (558)
T PRK10669 485 LLLTIPNGYE-----A---GEIVA--SAREKRPDIEIIARA 515 (558)
T ss_pred EEEEcCChHH-----H---HHHHH--HHHHHCCCCeEEEEE
Confidence 8887664321 1 11112 234456777666654
No 419
>PRK06046 alanine dehydrogenase; Validated
Probab=79.61 E-value=48 Score=31.83 Aligned_cols=113 Identities=15% Similarity=0.185 Sum_probs=66.8
Q ss_pred eEEEEEeCCCceE-EEEcCccccccCChhhHHHHHHhHHHhcCCCCCeEEEEecch-hH-HHHHHHhcCCCcEEEEEECC
Q 019699 59 DIALLDTKPFGKA-LVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGE-GS-TAREILRHKTVEKVVMCDID 135 (337)
Q Consensus 59 ~I~V~~~~~~G~~-L~lDG~~q~~~~de~~Y~e~l~~~~l~~~~~p~~VLiIG~G~-G~-~~~~ll~~~~~~~v~~VEid 135 (337)
-|.+++... |+. ..+||...+.-+..- .-.++ .-.+..++++++.+||+|. |. .++.+...++..+|.+++.+
T Consensus 88 ~i~L~d~~t-G~p~aild~~~lT~~RTaA--~sala-~~~La~~~~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~ 163 (326)
T PRK06046 88 VIILNSPET-GFPLAIMDGTYLTDMRTGA--AGGVA-AKYLARKDSKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRT 163 (326)
T ss_pred EEEEEeCCC-CceEEEEcCccHHHHHHHH--HHHHH-HHHhCCCCCCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCC
Confidence 566777665 554 467887766533311 11111 1334567889999999985 22 23445445678899999999
Q ss_pred hHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEEEeCCC
Q 019699 136 EEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLAD 185 (337)
Q Consensus 136 ~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi~D~~d 185 (337)
++-.+...+.+... + ..+++ ...|..+.+ + .|+|++-.+.
T Consensus 164 ~~~~~~~~~~~~~~---~-~~~v~-~~~~~~~~l----~-aDiVv~aTps 203 (326)
T PRK06046 164 KSSAEKFVERMSSV---V-GCDVT-VAEDIEEAC----D-CDILVTTTPS 203 (326)
T ss_pred HHHHHHHHHHHHhh---c-CceEE-EeCCHHHHh----h-CCEEEEecCC
Confidence 98776655544311 0 11232 245655544 2 7999987653
No 420
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=79.50 E-value=17 Score=34.71 Aligned_cols=44 Identities=9% Similarity=0.094 Sum_probs=32.9
Q ss_pred CCCCeEEEEecc-hhHHHHHHHhcCCCcEEEEEECChHHHHHHHhh
Q 019699 101 PNPKTIFIMGGG-EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSY 145 (337)
Q Consensus 101 ~~p~~VLiIG~G-~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~ 145 (337)
....+||+.|+| .|..+..+++..+ .+|++++.+++-.+.+++.
T Consensus 164 ~~g~~VlV~G~g~iG~~a~~~a~~~G-~~vi~~~~~~~~~~~a~~~ 208 (329)
T TIGR02822 164 PPGGRLGLYGFGGSAHLTAQVALAQG-ATVHVMTRGAAARRLALAL 208 (329)
T ss_pred CCCCEEEEEcCCHHHHHHHHHHHHCC-CeEEEEeCChHHHHHHHHh
Confidence 446799999964 4445566677665 4799999999888988884
No 421
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=79.49 E-value=20 Score=35.80 Aligned_cols=101 Identities=16% Similarity=0.252 Sum_probs=54.2
Q ss_pred CCCCeEEEEecchhH-HHHHHHhcCCCcEEEEEECChHHHH-HHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeE
Q 019699 101 PNPKTIFIMGGGEGS-TAREILRHKTVEKVVMCDIDEEVVE-FCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV 178 (337)
Q Consensus 101 ~~p~~VLiIG~G~G~-~~~~ll~~~~~~~v~~VEid~~vi~-~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDv 178 (337)
...++||+||+|.=+ .....+...+..+|++++.+++-.+ +++++ +. .+ +...|..+.+ ..+|+
T Consensus 180 ~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~-g~--------~~-~~~~~~~~~l----~~aDv 245 (423)
T PRK00045 180 LSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAEEF-GG--------EA-IPLDELPEAL----AEADI 245 (423)
T ss_pred ccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHc-CC--------cE-eeHHHHHHHh----ccCCE
Confidence 356899999987433 2222333345668999999986544 55442 10 11 1113333333 46899
Q ss_pred EEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCCC
Q 019699 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPA 222 (337)
Q Consensus 179 Ii~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p 222 (337)
||.-.+.+ ..+.+.+.++. ..+.=+.++.+++....|
T Consensus 246 VI~aT~s~------~~~i~~~~l~~-~~~~~~~~~~vviDla~P 282 (423)
T PRK00045 246 VISSTGAP------HPIIGKGMVER-ALKARRHRPLLLVDLAVP 282 (423)
T ss_pred EEECCCCC------CcEEcHHHHHH-HHhhccCCCeEEEEeCCC
Confidence 99776533 24456666654 211101244666665443
No 422
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=79.47 E-value=8.1 Score=40.50 Aligned_cols=94 Identities=17% Similarity=0.249 Sum_probs=61.8
Q ss_pred CeEEEEecchhH-H-HHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHH--HHhhcC-CceeE
Q 019699 104 KTIFIMGGGEGS-T-AREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA--ELESRK-ESYDV 178 (337)
Q Consensus 104 ~~VLiIG~G~G~-~-~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~--~l~~~~-~~yDv 178 (337)
.+|+++|+|.=+ . ++.+.++ ..+++++|.|++.++.++++ ..+++.+|+.+ .+++.+ ++.|+
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~--g~~vvvID~d~~~v~~~~~~-----------g~~v~~GDat~~~~L~~agi~~A~~ 467 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMAN--KMRITVLERDISAVNLMRKY-----------GYKVYYGDATQLELLRAAGAEKAEA 467 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhC--CCCEEEEECCHHHHHHHHhC-----------CCeEEEeeCCCHHHHHhcCCccCCE
Confidence 589999988433 2 3444433 35799999999999988763 35688999864 455543 68999
Q ss_pred EEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCC
Q 019699 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG 220 (337)
Q Consensus 179 Ii~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~ 220 (337)
+++-..++. ..+ ..-+ ..+.+.|+..++....
T Consensus 468 vv~~~~d~~-----~n~---~i~~--~~r~~~p~~~IiaRa~ 499 (601)
T PRK03659 468 IVITCNEPE-----DTM---KIVE--LCQQHFPHLHILARAR 499 (601)
T ss_pred EEEEeCCHH-----HHH---HHHH--HHHHHCCCCeEEEEeC
Confidence 998876543 111 1122 2356788887777653
No 423
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=79.40 E-value=15 Score=35.36 Aligned_cols=97 Identities=15% Similarity=0.175 Sum_probs=58.5
Q ss_pred CCCCeEEEEec--chhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEE-ccHHHHHhh-cCCce
Q 019699 101 PNPKTIFIMGG--GEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI-NDARAELES-RKESY 176 (337)
Q Consensus 101 ~~p~~VLiIG~--G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~-~D~~~~l~~-~~~~y 176 (337)
.+..+||+.|+ |-|.++..+++..+ .+|.+++.+++-.+.+++-++.. .-+.... .|..+.++. ..+.+
T Consensus 157 ~~g~~VlV~GaaG~vG~~aiqlAk~~G-~~Vi~~~~~~~k~~~~~~~lGa~------~vi~~~~~~~~~~~i~~~~~~gv 229 (348)
T PLN03154 157 KKGDSVFVSAASGAVGQLVGQLAKLHG-CYVVGSAGSSQKVDLLKNKLGFD------EAFNYKEEPDLDAALKRYFPEGI 229 (348)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHcC-CEEEEEcCCHHHHHHHHHhcCCC------EEEECCCcccHHHHHHHHCCCCc
Confidence 45679999986 46667777888765 57888998888888776433321 0011111 133333433 23469
Q ss_pred eEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699 177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (337)
Q Consensus 177 DvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~ 218 (337)
|+|+ |.. +. ..+.. +.+.|+++|.+++-
T Consensus 230 D~v~-d~v-----G~-------~~~~~-~~~~l~~~G~iv~~ 257 (348)
T PLN03154 230 DIYF-DNV-----GG-------DMLDA-ALLNMKIHGRIAVC 257 (348)
T ss_pred EEEE-ECC-----CH-------HHHHH-HHHHhccCCEEEEE
Confidence 9888 543 11 12233 45789999998864
No 424
>PRK15076 alpha-galactosidase; Provisional
Probab=79.29 E-value=14 Score=37.05 Aligned_cols=76 Identities=22% Similarity=0.277 Sum_probs=43.7
Q ss_pred CeEEEEecch-hHHHH---HHH--hcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEE-EccHHHHHhhcCCce
Q 019699 104 KTIFIMGGGE-GSTAR---EIL--RHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELV-INDARAELESRKESY 176 (337)
Q Consensus 104 ~~VLiIG~G~-G~~~~---~ll--~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~-~~D~~~~l~~~~~~y 176 (337)
.+|.+||+|+ |.+.. -++ ......+|+.+|+|++-.+.++..+...... .....++. ..|..+-++. -
T Consensus 2 ~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l~~~~~~~-~~~~~~i~~ttD~~eal~d----A 76 (431)
T PRK15076 2 PKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIVARKLAES-LGASAKITATTDRREALQG----A 76 (431)
T ss_pred cEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHHHHHHHHh-cCCCeEEEEECCHHHHhCC----C
Confidence 4799999999 53332 222 2233458999999999888655554321111 12334555 5564444432 4
Q ss_pred eEEEEeCC
Q 019699 177 DVIIGDLA 184 (337)
Q Consensus 177 DvIi~D~~ 184 (337)
|+|+.-.-
T Consensus 77 DfVv~ti~ 84 (431)
T PRK15076 77 DYVINAIQ 84 (431)
T ss_pred CEEeEeee
Confidence 66666554
No 425
>PRK06949 short chain dehydrogenase; Provisional
Probab=79.19 E-value=13 Score=33.35 Aligned_cols=77 Identities=13% Similarity=0.183 Sum_probs=45.7
Q ss_pred CCCeEEEEecchhHHHHHHHhcC--CCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHH------HHHh---
Q 019699 102 NPKTIFIMGGGEGSTAREILRHK--TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDAR------AELE--- 170 (337)
Q Consensus 102 ~p~~VLiIG~G~G~~~~~ll~~~--~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~------~~l~--- 170 (337)
..++||+.|++ |++++.+++.. ...+|+++..+++-++.....+... ..+++++..|.. +.++
T Consensus 8 ~~k~ilItGas-g~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~ 81 (258)
T PRK06949 8 EGKVALVTGAS-SGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAE-----GGAAHVVSLDVTDYQSIKAAVAHAE 81 (258)
T ss_pred CCCEEEEECCC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-----CCcEEEEEecCCCHHHHHHHHHHHH
Confidence 45788998864 44444433321 2357999999988766555443221 245777777653 2222
Q ss_pred hcCCceeEEEEeCC
Q 019699 171 SRKESYDVIIGDLA 184 (337)
Q Consensus 171 ~~~~~yDvIi~D~~ 184 (337)
+..++.|+||....
T Consensus 82 ~~~~~~d~li~~ag 95 (258)
T PRK06949 82 TEAGTIDILVNNSG 95 (258)
T ss_pred HhcCCCCEEEECCC
Confidence 12356899998875
No 426
>PLN02827 Alcohol dehydrogenase-like
Probab=79.13 E-value=19 Score=35.07 Aligned_cols=99 Identities=14% Similarity=0.169 Sum_probs=57.2
Q ss_pred CCCCeEEEEecch-hHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEE--ccHHHHHhh-cCCce
Q 019699 101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI--NDARAELES-RKESY 176 (337)
Q Consensus 101 ~~p~~VLiIG~G~-G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~--~D~~~~l~~-~~~~y 176 (337)
....+||+.|+|. |..+..+++..+...|++++.+++-.+.++++ +.. .-+.... .|..+.+++ ....+
T Consensus 192 ~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~l-Ga~------~~i~~~~~~~~~~~~v~~~~~~g~ 264 (378)
T PLN02827 192 SKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKTF-GVT------DFINPNDLSEPIQQVIKRMTGGGA 264 (378)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc-CCc------EEEcccccchHHHHHHHHHhCCCC
Confidence 4568999998653 33445666766666799999999888888764 211 0011111 133344433 22369
Q ss_pred eEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCC-ceEEEeC
Q 019699 177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPE-GIFVTQA 219 (337)
Q Consensus 177 DvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~-Gvlv~~~ 219 (337)
|+|| |... .+ ..+.. +-+.|+++ |.+++-.
T Consensus 265 d~vi-d~~G----~~-------~~~~~-~l~~l~~g~G~iv~~G 295 (378)
T PLN02827 265 DYSF-ECVG----DT-------GIATT-ALQSCSDGWGLTVTLG 295 (378)
T ss_pred CEEE-ECCC----Ch-------HHHHH-HHHhhccCCCEEEEEC
Confidence 9887 4431 11 12233 34678898 9987643
No 427
>TIGR01627 A_thal_3515 uncharacterized plant-specific domain TIGR01627. This model represents an uncharacterized domain found in both Arabidopsis thaliana (at least 10 copies) and Oryza sativa. Most member proteins have only a short stretch of sequence N-terminal to this domain, but one has a long N-terminal extension that includes a protein kinase domain (pfam00069).
Probab=78.79 E-value=18 Score=32.88 Aligned_cols=51 Identities=14% Similarity=0.223 Sum_probs=41.6
Q ss_pred HHHhcCCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhh
Q 019699 95 PALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLV 147 (337)
Q Consensus 95 ~~l~~~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~ 147 (337)
...+.+..|-+.|+.|.|-....-..+.|. .+-+.+|=|+..++.+++.++
T Consensus 32 ~~VL~~raPCN~LVFGLghdsllW~aLN~g--GrTvFLEEd~~~i~~~~~~~p 82 (225)
T TIGR01627 32 SDVLTRRSPCNILVFGLAHQYLMWSSLNHR--GRTVFIEEEKIMIAKAEVNPP 82 (225)
T ss_pred HHHHHhcCCceEEEeccCcchHHHHHhcCC--CeeEEecCCHHHHHHHhhcCC
Confidence 345556788999999999999988888874 567889999999998887654
No 428
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=78.71 E-value=8.2 Score=36.78 Aligned_cols=33 Identities=21% Similarity=0.392 Sum_probs=21.9
Q ss_pred eEEEEecch-hHHHHHHHhcCCCcEEEEEECChH
Q 019699 105 TIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEE 137 (337)
Q Consensus 105 ~VLiIG~G~-G~~~~~ll~~~~~~~v~~VEid~~ 137 (337)
+||+||+|+ |+-....+...++.+++.||-|--
T Consensus 1 kVlVVGaGGlG~eilknLal~Gvg~I~IvD~D~V 34 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALSGFRNIHVIDMDTI 34 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEe
Confidence 689999873 322223333467899999998753
No 429
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=78.43 E-value=15 Score=30.61 Aligned_cols=74 Identities=16% Similarity=0.149 Sum_probs=42.9
Q ss_pred CCCCeEEEEecch--hHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeE
Q 019699 101 PNPKTIFIMGGGE--GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV 178 (337)
Q Consensus 101 ~~p~~VLiIG~G~--G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDv 178 (337)
.++++|+++|+|. ..+++.+.+. +..+|++++.+++-.+...+.+... .+.....|..+. -+..|+
T Consensus 17 ~~~~~i~iiG~G~~g~~~a~~l~~~-g~~~v~v~~r~~~~~~~~~~~~~~~-------~~~~~~~~~~~~----~~~~Dv 84 (155)
T cd01065 17 LKGKKVLILGAGGAARAVAYALAEL-GAAKIVIVNRTLEKAKALAERFGEL-------GIAIAYLDLEEL----LAEADL 84 (155)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHC-CCCEEEEEcCCHHHHHHHHHHHhhc-------ccceeecchhhc----cccCCE
Confidence 4578999999863 2334444443 2468999999987665543333210 011222332222 356999
Q ss_pred EEEeCCCC
Q 019699 179 IIGDLADP 186 (337)
Q Consensus 179 Ii~D~~dp 186 (337)
|++..+.+
T Consensus 85 vi~~~~~~ 92 (155)
T cd01065 85 IINTTPVG 92 (155)
T ss_pred EEeCcCCC
Confidence 99988754
No 430
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=78.38 E-value=50 Score=33.74 Aligned_cols=88 Identities=19% Similarity=0.249 Sum_probs=51.4
Q ss_pred CCCeEEEEecchhH-HHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699 102 NPKTIFIMGGGEGS-TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (337)
Q Consensus 102 ~p~~VLiIG~G~G~-~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi 180 (337)
..++|+++|.|.=+ .....++..+ .+|+++|.|+.-...+... .+++. +..+.+ +..|+|+
T Consensus 253 aGKtVgVIG~G~IGr~vA~rL~a~G-a~ViV~e~dp~~a~~A~~~-----------G~~~~--~leell----~~ADIVI 314 (476)
T PTZ00075 253 AGKTVVVCGYGDVGKGCAQALRGFG-ARVVVTEIDPICALQAAME-----------GYQVV--TLEDVV----ETADIFV 314 (476)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC-CEEEEEeCCchhHHHHHhc-----------Cceec--cHHHHH----hcCCEEE
Confidence 57899999999632 2222333344 5899999998765333321 11211 222333 4689999
Q ss_pred EeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCC
Q 019699 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG 220 (337)
Q Consensus 181 ~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~ 220 (337)
+-.. . .++++.+.++ .++|+++++ |.+
T Consensus 315 ~atG-----t--~~iI~~e~~~-----~MKpGAiLI-NvG 341 (476)
T PTZ00075 315 TATG-----N--KDIITLEHMR-----RMKNNAIVG-NIG 341 (476)
T ss_pred ECCC-----c--ccccCHHHHh-----ccCCCcEEE-EcC
Confidence 7632 1 2566655443 578888775 765
No 431
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=78.38 E-value=21 Score=33.82 Aligned_cols=97 Identities=20% Similarity=0.224 Sum_probs=58.9
Q ss_pred CCCCeEEEEec--chhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEE-ccHHHHHhh-cCCce
Q 019699 101 PNPKTIFIMGG--GEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI-NDARAELES-RKESY 176 (337)
Q Consensus 101 ~~p~~VLiIG~--G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~-~D~~~~l~~-~~~~y 176 (337)
....+||+.|+ |-|..+..+++..+ .+|+++..+++-.+.+++.++.. .-+.... .|..+.+.. ..+.+
T Consensus 150 ~~g~~VlI~Ga~G~vG~~aiqlAk~~G-~~Vi~~~~~~~~~~~~~~~lGa~------~vi~~~~~~~~~~~i~~~~~~gv 222 (338)
T cd08295 150 KKGETVFVSAASGAVGQLVGQLAKLKG-CYVVGSAGSDEKVDLLKNKLGFD------DAFNYKEEPDLDAALKRYFPNGI 222 (338)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHhcCCc------eeEEcCCcccHHHHHHHhCCCCc
Confidence 45689999985 56667777888765 46888888888888887733321 0011001 133333333 23569
Q ss_pred eEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699 177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (337)
Q Consensus 177 DvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~ 218 (337)
|+|+ |... + ..+.. +.+.|+++|.++.-
T Consensus 223 d~v~-d~~g----~--------~~~~~-~~~~l~~~G~iv~~ 250 (338)
T cd08295 223 DIYF-DNVG----G--------KMLDA-VLLNMNLHGRIAAC 250 (338)
T ss_pred EEEE-ECCC----H--------HHHHH-HHHHhccCcEEEEe
Confidence 9888 5431 1 12334 46789999998854
No 432
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=78.38 E-value=8.7 Score=38.09 Aligned_cols=74 Identities=20% Similarity=0.305 Sum_probs=46.3
Q ss_pred CeEEEEecch-hHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHH--HhhcCCceeEEE
Q 019699 104 KTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE--LESRKESYDVII 180 (337)
Q Consensus 104 ~~VLiIG~G~-G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~--l~~~~~~yDvIi 180 (337)
++||+||+|. |....+-+...+..+|++++-+++-.+.+.... +++++.+.=|+.+. +...-+.+|++|
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~--------~~~v~~~~vD~~d~~al~~li~~~d~VI 73 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELI--------GGKVEALQVDAADVDALVALIKDFDLVI 73 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhc--------cccceeEEecccChHHHHHHHhcCCEEE
Confidence 5899999963 333333323344589999999987766665532 34677776666433 322224569999
Q ss_pred EeCCC
Q 019699 181 GDLAD 185 (337)
Q Consensus 181 ~D~~d 185 (337)
.-++.
T Consensus 74 n~~p~ 78 (389)
T COG1748 74 NAAPP 78 (389)
T ss_pred EeCCc
Confidence 87763
No 433
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=78.25 E-value=8 Score=38.06 Aligned_cols=34 Identities=24% Similarity=0.447 Sum_probs=24.5
Q ss_pred CCCeEEEEecch-hHHHHHHHhcCCCcEEEEEECC
Q 019699 102 NPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDID 135 (337)
Q Consensus 102 ~p~~VLiIG~G~-G~~~~~ll~~~~~~~v~~VEid 135 (337)
...+||+||+|+ |+.....+...++.+++.+|-|
T Consensus 40 ~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D 74 (370)
T PRK05600 40 HNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDD 74 (370)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 457899999985 3333333344578899999988
No 434
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=78.13 E-value=37 Score=31.58 Aligned_cols=109 Identities=21% Similarity=0.220 Sum_probs=62.7
Q ss_pred CCCCCeEEEEecchhHHHH---HHHhcC--CCcEEEEEECCh--------------------------HHHHHHHhhhhh
Q 019699 100 HPNPKTIFIMGGGEGSTAR---EILRHK--TVEKVVMCDIDE--------------------------EVVEFCKSYLVV 148 (337)
Q Consensus 100 ~~~p~~VLiIG~G~G~~~~---~ll~~~--~~~~v~~VEid~--------------------------~vi~~a~~~f~~ 148 (337)
..-|..++++|.--|+++. .+++.. +..++.+.|-=+ .-.+..+++|..
T Consensus 72 ~~vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~ 151 (248)
T PF05711_consen 72 EDVPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFAR 151 (248)
T ss_dssp TTS-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCC
T ss_pred cCCCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHH
Confidence 3568999999998887553 344322 345677766321 123444444432
Q ss_pred ccCCCCCCCeEEEEccHHHHHhhc-CCceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699 149 NKEAFSDPRLELVINDARAELESR-KESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (337)
Q Consensus 149 ~~~~~~d~rv~v~~~D~~~~l~~~-~~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~ 219 (337)
. .+.+++++++.|+..+-+... .+++-++-+|.--- .| |.+-+.. +..+|.|||++++.-
T Consensus 152 ~--gl~~~~v~~vkG~F~dTLp~~p~~~IAll~lD~DlY---es-----T~~aLe~-lyprl~~GGiIi~DD 212 (248)
T PF05711_consen 152 Y--GLLDDNVRFVKGWFPDTLPDAPIERIALLHLDCDLY---ES-----TKDALEF-LYPRLSPGGIIIFDD 212 (248)
T ss_dssp T--TTSSTTEEEEES-HHHHCCC-TT--EEEEEE---SH---HH-----HHHHHHH-HGGGEEEEEEEEESS
T ss_pred c--CCCcccEEEECCcchhhhccCCCccEEEEEEeccch---HH-----HHHHHHH-HHhhcCCCeEEEEeC
Confidence 2 234679999999998888754 36788888885210 11 5677777 789999999999874
No 435
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=77.95 E-value=7.2 Score=43.46 Aligned_cols=51 Identities=24% Similarity=0.285 Sum_probs=31.0
Q ss_pred ChhhHHHHHHhHHHhc--CCCCCeEEEEecchhHHHHHHHh---cCCCcEEEEEECCh
Q 019699 84 DEFIYHESLVHPALLH--HPNPKTIFIMGGGEGSTAREILR---HKTVEKVVMCDIDE 136 (337)
Q Consensus 84 de~~Y~e~l~~~~l~~--~~~p~~VLiIG~G~G~~~~~ll~---~~~~~~v~~VEid~ 136 (337)
|+..|.+.+.....-. .-...+||++|+|+ ++.++++ ..++.+++.+|-|.
T Consensus 3 d~~lYsRQi~l~G~eaq~kL~~s~VLIiG~gG--LG~EiaKnL~laGVg~iti~D~d~ 58 (1008)
T TIGR01408 3 DEALYSRQLYVLGDEAMQKMAKSNVLISGMGG--LGLEIAKNLVLAGVKSVTLHDTEK 58 (1008)
T ss_pred hHhhhhhHHHhcCHHHHHHHhhCcEEEECCCH--HHHHHHHHHHHcCCCeEEEEeCCe
Confidence 4556766543222111 12347899999964 4444443 35789999999775
No 436
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=77.71 E-value=5.7 Score=39.27 Aligned_cols=44 Identities=5% Similarity=0.086 Sum_probs=34.7
Q ss_pred cCCCCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHh
Q 019699 99 HHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKS 144 (337)
Q Consensus 99 ~~~~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~ 144 (337)
...+..+||.|.+|+..++..+++.| ++|++||+||.-..+.+-
T Consensus 32 ~i~~~d~vl~ItSaG~N~L~yL~~~P--~~I~aVDlNp~Q~aLleL 75 (380)
T PF11899_consen 32 NIGPDDRVLTITSAGCNALDYLLAGP--KRIHAVDLNPAQNALLEL 75 (380)
T ss_pred CCCCCCeEEEEccCCchHHHHHhcCC--ceEEEEeCCHHHHHHHHH
Confidence 33556789999999888888877653 799999999997776653
No 437
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=77.52 E-value=34 Score=33.64 Aligned_cols=78 Identities=18% Similarity=0.252 Sum_probs=46.0
Q ss_pred CCCCeEEEEe-cc--hhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCcee
Q 019699 101 PNPKTIFIMG-GG--EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYD 177 (337)
Q Consensus 101 ~~p~~VLiIG-~G--~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yD 177 (337)
|..++|.+|| .| +|.+++.+.+. + -.|++++.++. .+..+.+ ...|
T Consensus 96 ~~~~~I~IiGG~GlmG~slA~~l~~~-G-~~V~~~d~~~~-------------------------~~~~~~~----~~aD 144 (374)
T PRK11199 96 PDLRPVVIVGGKGQLGRLFAKMLTLS-G-YQVRILEQDDW-------------------------DRAEDIL----ADAG 144 (374)
T ss_pred cccceEEEEcCCChhhHHHHHHHHHC-C-CeEEEeCCCcc-------------------------hhHHHHH----hcCC
Confidence 3458999999 45 34445555553 2 56888887531 1122223 3579
Q ss_pred EEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCC
Q 019699 178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGP 221 (337)
Q Consensus 178 vIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~ 221 (337)
+||+-.+... ..+.++. +.. ++||.++ +..++
T Consensus 145 lVilavP~~~---------~~~~~~~-l~~-l~~~~iv-~Dv~S 176 (374)
T PRK11199 145 MVIVSVPIHL---------TEEVIAR-LPP-LPEDCIL-VDLTS 176 (374)
T ss_pred EEEEeCcHHH---------HHHHHHH-HhC-CCCCcEE-EECCC
Confidence 9999886321 3566777 566 7765554 45443
No 438
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=77.29 E-value=21 Score=31.97 Aligned_cols=76 Identities=17% Similarity=0.257 Sum_probs=44.6
Q ss_pred CCCeEEEEecchhHHH----HHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHH-----------
Q 019699 102 NPKTIFIMGGGEGSTA----REILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDAR----------- 166 (337)
Q Consensus 102 ~p~~VLiIG~G~G~~~----~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~----------- 166 (337)
+.++||+.|+. |.++ +++++. ..+|.+++.+++-.+...+.+... ...+++++..|..
T Consensus 11 ~~k~vlItG~~-g~iG~~la~~l~~~--G~~Vi~~~r~~~~~~~~~~~l~~~----~~~~~~~~~~d~~~~~~~~~~~~~ 83 (247)
T PRK08945 11 KDRIILVTGAG-DGIGREAALTYARH--GATVILLGRTEEKLEAVYDEIEAA----GGPQPAIIPLDLLTATPQNYQQLA 83 (247)
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHC--CCcEEEEeCCHHHHHHHHHHHHhc----CCCCceEEEecccCCCHHHHHHHH
Confidence 56789999865 4444 444443 358999999886554443333221 1245666655542
Q ss_pred HHHhhcCCceeEEEEeCC
Q 019699 167 AELESRKESYDVIIGDLA 184 (337)
Q Consensus 167 ~~l~~~~~~yDvIi~D~~ 184 (337)
+.+.+...+.|+||..+.
T Consensus 84 ~~~~~~~~~id~vi~~Ag 101 (247)
T PRK08945 84 DTIEEQFGRLDGVLHNAG 101 (247)
T ss_pred HHHHHHhCCCCEEEECCc
Confidence 122223357999998875
No 439
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=77.21 E-value=19 Score=34.22 Aligned_cols=98 Identities=23% Similarity=0.276 Sum_probs=56.9
Q ss_pred CCCCeEEEEecch-hHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEcc----HHHHHhhc-CC
Q 019699 101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVIND----ARAELESR-KE 174 (337)
Q Consensus 101 ~~p~~VLiIG~G~-G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D----~~~~l~~~-~~ 174 (337)
.+..+||+.|+|+ |..+.++++..+...|.++.-+++-.+.+++. +.. .-+.....+ ..+..+.. ++
T Consensus 161 ~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~~-g~~------~vi~~~~~~~~~~~~~~~~~~~~~ 233 (343)
T cd05285 161 RPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKEL-GAT------HTVNVRTEDTPESAEKIAELLGGK 233 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc-CCc------EEeccccccchhHHHHHHHHhCCC
Confidence 4568999987654 55667777777655588998888887777663 211 000111112 11122212 35
Q ss_pred ceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699 175 SYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (337)
Q Consensus 175 ~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~ 218 (337)
.+|+|+--... ....+. ..+.|+++|.++.-
T Consensus 234 ~~d~vld~~g~------------~~~~~~-~~~~l~~~G~~v~~ 264 (343)
T cd05285 234 GPDVVIECTGA------------ESCIQT-AIYATRPGGTVVLV 264 (343)
T ss_pred CCCEEEECCCC------------HHHHHH-HHHHhhcCCEEEEE
Confidence 59998854321 113344 46789999988754
No 440
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=76.61 E-value=4.2 Score=36.59 Aligned_cols=114 Identities=15% Similarity=0.025 Sum_probs=58.9
Q ss_pred CCCCeEEEEecchhHHHHHHHhcC-CCcEEEEEECChHHHHHHHhhhhhccCCCC---CCCeEEEEccHHHHHhhcCCce
Q 019699 101 PNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFS---DPRLELVINDARAELESRKESY 176 (337)
Q Consensus 101 ~~p~~VLiIG~G~G~~~~~ll~~~-~~~~v~~VEid~~vi~~a~~~f~~~~~~~~---d~rv~v~~~D~~~~l~~~~~~y 176 (337)
.....|.++=-|+|.+++-+..+- +...|..+--+ ++...+..+-+....... -.+++.+-.+...+. ..+.-
T Consensus 47 kpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~-e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~--~pq~~ 123 (238)
T COG4798 47 KPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPA-ELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALG--APQKL 123 (238)
T ss_pred CCCCEEEEEecCCccHhhhhchhcCCceeEEEecch-hhcccccchhhhhhhhhhhhhhhhhhhhCCcccccC--CCCcc
Confidence 566789999999999999888763 23355544332 222222222110000000 112333333322222 23556
Q ss_pred eEEEEeCCCCCCC-CCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699 177 DVIIGDLADPIEG-GPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (337)
Q Consensus 177 DvIi~D~~dp~~~-~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~ 218 (337)
|+++....+.... -+...-+-..+++. +.+.|||||++++.
T Consensus 124 d~~~~~~~yhdmh~k~i~~~~A~~vna~-vf~~LKPGGv~~V~ 165 (238)
T COG4798 124 DLVPTAQNYHDMHNKNIHPATAAKVNAA-VFKALKPGGVYLVE 165 (238)
T ss_pred cccccchhhhhhhccccCcchHHHHHHH-HHHhcCCCcEEEEE
Confidence 6666554432210 00012234568887 78999999999875
No 441
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=76.59 E-value=28 Score=34.66 Aligned_cols=106 Identities=18% Similarity=0.154 Sum_probs=63.5
Q ss_pred CeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhh---------c--
Q 019699 104 KTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES---------R-- 172 (337)
Q Consensus 104 ~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~---------~-- 172 (337)
.+|-+||+|-=+++..+.-.....+|+++|||+..++...+= +..+..-|.-+.++. +
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G-----------~~~i~e~~~~~~v~~~v~~g~lraTtd 78 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNRG-----------ESYIEEPDLDEVVKEAVESGKLRATTD 78 (436)
T ss_pred eEEEEEccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhCC-----------cceeecCcHHHHHHHHHhcCCceEecC
Confidence 689999999666654443322346899999999999876541 111111111111111 1
Q ss_pred C---CceeEEEEeCCCCCCC--CCCcCCchHHHHHHHhccccCCCceEEEeCCCC
Q 019699 173 K---ESYDVIIGDLADPIEG--GPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPA 222 (337)
Q Consensus 173 ~---~~yDvIi~D~~dp~~~--~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p 222 (337)
. ..-|++|+-.+.|... .| .--|-..--+. ++..|++|-++++.+..|
T Consensus 79 ~~~l~~~dv~iI~VPTPl~~~~~p-Dls~v~~aa~s-Ia~~L~kG~LVIlEST~~ 131 (436)
T COG0677 79 PEELKECDVFIICVPTPLKKYREP-DLSYVESAARS-IAPVLKKGDLVILESTTP 131 (436)
T ss_pred hhhcccCCEEEEEecCCcCCCCCC-ChHHHHHHHHH-HHHhcCCCCEEEEecCCC
Confidence 1 3689999988866532 22 11122333444 578999999999988654
No 442
>PRK07904 short chain dehydrogenase; Provisional
Probab=76.17 E-value=20 Score=32.66 Aligned_cols=80 Identities=19% Similarity=0.304 Sum_probs=45.5
Q ss_pred CCCCCeEEEEecchhHHHHHHHhc---CCCcEEEEEECChHH-HHHHHhhhhhccCCCCCCCeEEEEccHHH------HH
Q 019699 100 HPNPKTIFIMGGGEGSTAREILRH---KTVEKVVMCDIDEEV-VEFCKSYLVVNKEAFSDPRLELVINDARA------EL 169 (337)
Q Consensus 100 ~~~p~~VLiIG~G~G~~~~~ll~~---~~~~~v~~VEid~~v-i~~a~~~f~~~~~~~~d~rv~v~~~D~~~------~l 169 (337)
..++++||+.|+++ +++++++++ .+..+|+++..++.- .+...+.+... ...+++++..|..+ .+
T Consensus 5 ~~~~~~vlItGas~-giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~----~~~~v~~~~~D~~~~~~~~~~~ 79 (253)
T PRK07904 5 VGNPQTILLLGGTS-EIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAA----GASSVEVIDFDALDTDSHPKVI 79 (253)
T ss_pred cCCCcEEEEEcCCc-HHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhc----CCCceEEEEecCCChHHHHHHH
Confidence 35778999999854 444444432 123688898887753 43333322221 12367777777532 12
Q ss_pred hhc--CCceeEEEEeCC
Q 019699 170 ESR--KESYDVIIGDLA 184 (337)
Q Consensus 170 ~~~--~~~yDvIi~D~~ 184 (337)
+.. .+..|++|....
T Consensus 80 ~~~~~~g~id~li~~ag 96 (253)
T PRK07904 80 DAAFAGGDVDVAIVAFG 96 (253)
T ss_pred HHHHhcCCCCEEEEeee
Confidence 211 257999988764
No 443
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=76.12 E-value=80 Score=30.74 Aligned_cols=146 Identities=11% Similarity=0.085 Sum_probs=76.2
Q ss_pred eEEEEecchhHHHHHHHhcCCC--------cEEEEEEC-----ChHHHHHHHhhhhhc---cCCCCCCCeEEEEccHHHH
Q 019699 105 TIFIMGGGEGSTAREILRHKTV--------EKVVMCDI-----DEEVVEFCKSYLVVN---KEAFSDPRLELVINDARAE 168 (337)
Q Consensus 105 ~VLiIG~G~G~~~~~ll~~~~~--------~~v~~VEi-----d~~vi~~a~~~f~~~---~~~~~d~rv~v~~~D~~~~ 168 (337)
+|.+||+|..+++....-.... .+|++... ++++.+...+..... .+.--.++++. ..|..+.
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~a-t~dl~ea 79 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVA-VPDLVEA 79 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEE-ECCHHHH
Confidence 5889999988776444221112 57888877 667777665432110 00001234444 4565555
Q ss_pred HhhcCCceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeCCCCCcCCChhHHHHHHHHHhhhcCceeEE
Q 019699 169 LESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPY 248 (337)
Q Consensus 169 l~~~~~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~~~~~~~~~i~~~l~~vF~~v~~~ 248 (337)
++ .-|+|++-.++. +-+++.+. ++..|+++- +++... .+..........+.+.+++.|+. ...
T Consensus 80 l~----~ADiIIlAVPs~---------~i~~vl~~-l~~~l~~~~-~iVs~t-KGie~~~~~~~~~se~i~e~l~~-~~~ 142 (342)
T TIGR03376 80 AK----GADILVFVIPHQ---------FLEGICKQ-LKGHVKPNA-RAISCI-KGLEVSKDGVKLLSDIIEEELGI-PCG 142 (342)
T ss_pred Hh----cCCEEEEECChH---------HHHHHHHH-HHhhcCCCC-EEEEEe-CCcccCCCcCccHHHHHHHHhCC-CeE
Confidence 53 468999887532 22466777 677887654 333331 11111111233444555666632 223
Q ss_pred EeeccccC------CceEEEEEecCC
Q 019699 249 SAHIPSFA------DTWGWIMASDSP 268 (337)
Q Consensus 249 ~~~vP~~~------~~~~~~~as~~p 268 (337)
...-|++. ..-..++||+.+
T Consensus 143 ~lsGP~~A~Eva~~~pt~~~ia~~~~ 168 (342)
T TIGR03376 143 VLSGANLANEVAKEKFSETTVGYRDP 168 (342)
T ss_pred EeeCcchHHHHHcCCCceEEEEeCCC
Confidence 34557763 123567888764
No 444
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=75.90 E-value=4.8 Score=39.80 Aligned_cols=58 Identities=14% Similarity=0.229 Sum_probs=44.1
Q ss_pred CCeEEEEccHHHHHhhc-CCceeE-EEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699 156 PRLELVINDARAELESR-KESYDV-IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (337)
Q Consensus 156 ~rv~v~~~D~~~~l~~~-~~~yDv-Ii~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~ 219 (337)
+|++++.++..++|++. +++||. |++|..|-. .+ ..+ .+.++. +.+.++|||.++..+
T Consensus 275 drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm--~~--~~~-~~~~~~-l~~~~~pgaRV~~Rs 334 (380)
T PF11899_consen 275 DRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWM--DP--EQL-NEEWQE-LARTARPGARVLWRS 334 (380)
T ss_pred CeEEEEeccHHHHHHhCCCCCeeEEEecchhhhC--CH--HHH-HHHHHH-HHHHhCCCCEEEEee
Confidence 79999999999999875 688995 566877643 11 222 356677 789999999998865
No 445
>PRK06194 hypothetical protein; Provisional
Probab=75.73 E-value=21 Score=32.88 Aligned_cols=76 Identities=17% Similarity=0.202 Sum_probs=44.7
Q ss_pred CCeEEEEecchh---HHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHH--H----h---
Q 019699 103 PKTIFIMGGGEG---STAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE--L----E--- 170 (337)
Q Consensus 103 p~~VLiIG~G~G---~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~--l----~--- 170 (337)
.++||+.|+++| .++++++++ ..+|++++.+++-.+...+.+.. ...++.++..|..+. + +
T Consensus 6 ~k~vlVtGasggIG~~la~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~~~~D~~d~~~~~~~~~~~~ 78 (287)
T PRK06194 6 GKVAVITGAASGFGLAFARIGAAL--GMKLVLADVQQDALDRAVAELRA-----QGAEVLGVRTDVSDAAQVEALADAAL 78 (287)
T ss_pred CCEEEEeCCccHHHHHHHHHHHHC--CCEEEEEeCChHHHHHHHHHHHh-----cCCeEEEEECCCCCHHHHHHHHHHHH
Confidence 468898887543 233444443 35899999987655444333221 134677788876432 1 1
Q ss_pred hcCCceeEEEEeCCC
Q 019699 171 SRKESYDVIIGDLAD 185 (337)
Q Consensus 171 ~~~~~yDvIi~D~~d 185 (337)
+..++.|+||..+..
T Consensus 79 ~~~g~id~vi~~Ag~ 93 (287)
T PRK06194 79 ERFGAVHLLFNNAGV 93 (287)
T ss_pred HHcCCCCEEEECCCC
Confidence 112468999998863
No 446
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=75.58 E-value=18 Score=33.77 Aligned_cols=92 Identities=16% Similarity=0.224 Sum_probs=51.3
Q ss_pred eEEEEecchhHH--HHHHHhcCCCcEEEEEECChHHHHHHHhh-hhhccCCCCCCCeEE---EEccHHHHHhhcCCceeE
Q 019699 105 TIFIMGGGEGST--AREILRHKTVEKVVMCDIDEEVVEFCKSY-LVVNKEAFSDPRLEL---VINDARAELESRKESYDV 178 (337)
Q Consensus 105 ~VLiIG~G~G~~--~~~ll~~~~~~~v~~VEid~~vi~~a~~~-f~~~~~~~~d~rv~v---~~~D~~~~l~~~~~~yDv 178 (337)
+|++||+|.-+. +..+.+. ..+|+.++. ++-++..++. +.... .+....+ ...|. ....+.+|+
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~--g~~V~~~~r-~~~~~~~~~~g~~~~~---~~~~~~~~~~~~~~~----~~~~~~~d~ 71 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEA--GRDVTFLVR-PKRAKALRERGLVIRS---DHGDAVVPGPVITDP----EELTGPFDL 71 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHC--CCceEEEec-HHHHHHHHhCCeEEEe---CCCeEEecceeecCH----HHccCCCCE
Confidence 699999986544 4444443 357999998 6666665543 11111 0111111 11221 112267999
Q ss_pred EEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEE
Q 019699 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFV 216 (337)
Q Consensus 179 Ii~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv 216 (337)
||+-...+. ..+..+. ++..+.++.+++
T Consensus 72 vilavk~~~---------~~~~~~~-l~~~~~~~~~ii 99 (305)
T PRK12921 72 VILAVKAYQ---------LDAAIPD-LKPLVGEDTVII 99 (305)
T ss_pred EEEEecccC---------HHHHHHH-HHhhcCCCCEEE
Confidence 999875321 3456676 677788877654
No 447
>PRK08328 hypothetical protein; Provisional
Probab=75.47 E-value=4.1 Score=37.25 Aligned_cols=35 Identities=20% Similarity=0.338 Sum_probs=25.5
Q ss_pred CCCeEEEEecch-hHHHHHHHhcCCCcEEEEEECCh
Q 019699 102 NPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDE 136 (337)
Q Consensus 102 ~p~~VLiIG~G~-G~~~~~ll~~~~~~~v~~VEid~ 136 (337)
...+||++|+|+ |+.....+...++.+++.||-|.
T Consensus 26 ~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ 61 (231)
T PRK08328 26 KKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQT 61 (231)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 457899999884 55444444556789999998664
No 448
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=74.72 E-value=16 Score=35.22 Aligned_cols=97 Identities=21% Similarity=0.262 Sum_probs=58.5
Q ss_pred CCCCeEEEEec--chhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhc-C-Cce
Q 019699 101 PNPKTIFIMGG--GEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR-K-ESY 176 (337)
Q Consensus 101 ~~p~~VLiIG~--G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~-~-~~y 176 (337)
...++||+.|+ |-|.++..++++.+. .+.++--.++-.+.+++.... .-+.....|..+-+++. . +.+
T Consensus 141 ~~g~~VLV~gaaGgVG~~aiQlAk~~G~-~~v~~~~s~~k~~~~~~lGAd-------~vi~y~~~~~~~~v~~~t~g~gv 212 (326)
T COG0604 141 KPGETVLVHGAAGGVGSAAIQLAKALGA-TVVAVVSSSEKLELLKELGAD-------HVINYREEDFVEQVRELTGGKGV 212 (326)
T ss_pred CCCCEEEEecCCchHHHHHHHHHHHcCC-cEEEEecCHHHHHHHHhcCCC-------EEEcCCcccHHHHHHHHcCCCCc
Confidence 34789999995 556788899998765 444444445444477775432 12233344545555432 2 469
Q ss_pred eEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699 177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (337)
Q Consensus 177 DvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~ 219 (337)
|+|+ |+- +. +.+.. ..+.|+++|.++.-.
T Consensus 213 Dvv~-D~v-----G~-------~~~~~-~l~~l~~~G~lv~ig 241 (326)
T COG0604 213 DVVL-DTV-----GG-------DTFAA-SLAALAPGGRLVSIG 241 (326)
T ss_pred eEEE-ECC-----CH-------HHHHH-HHHHhccCCEEEEEe
Confidence 9998 432 21 23333 357899999988654
No 449
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=74.72 E-value=36 Score=32.75 Aligned_cols=45 Identities=22% Similarity=0.311 Sum_probs=33.1
Q ss_pred CCCCeEEEEecch-hHHHHHHHhcCCCcEEEEEECChHHHHHHHhh
Q 019699 101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSY 145 (337)
Q Consensus 101 ~~p~~VLiIG~G~-G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~ 145 (337)
....+||++|+|. |..+..+++..+..+|++++.+++-.+.++++
T Consensus 183 ~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~~ 228 (365)
T cd08277 183 EPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKEF 228 (365)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc
Confidence 4568999997653 23445567776666899999999988888764
No 450
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=74.56 E-value=35 Score=32.50 Aligned_cols=76 Identities=20% Similarity=0.242 Sum_probs=41.5
Q ss_pred CeEEEEecch-hHHHHHHHhcCCCcEEEEEECChHHHHHHHh--hhhhccCCCCCCCeEEEE-ccHHHHHhhcCCceeEE
Q 019699 104 KTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKS--YLVVNKEAFSDPRLELVI-NDARAELESRKESYDVI 179 (337)
Q Consensus 104 ~~VLiIG~G~-G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~--~f~~~~~~~~d~rv~v~~-~D~~~~l~~~~~~yDvI 179 (337)
.+|-+||+|. |.....++...+..+|+++|++++..+ ++. ... .........++.. +|..+ + ..-|+|
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~l~~-g~a~d~~~--~~~~~~~~~~i~~t~d~~~-~----~~aDiV 73 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEGIPQ-GKALDMYE--ASPVGGFDTKVTGTNNYAD-T----ANSDIV 73 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCChhH-HHHHhhhh--hhhccCCCcEEEecCCHHH-h----CCCCEE
Confidence 4799999986 444444433333337999999887543 221 111 1111111234433 56433 3 346999
Q ss_pred EEeCCCCC
Q 019699 180 IGDLADPI 187 (337)
Q Consensus 180 i~D~~dp~ 187 (337)
|+-+..|.
T Consensus 74 Iitag~p~ 81 (305)
T TIGR01763 74 VITAGLPR 81 (305)
T ss_pred EEcCCCCC
Confidence 99887654
No 451
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=74.29 E-value=23 Score=33.49 Aligned_cols=105 Identities=24% Similarity=0.324 Sum_probs=51.6
Q ss_pred EEEEecch-hHHHHHHHhcCCCcEEEEEECChHHHHHHHhh-hhhccCCCCCCCeEEEE-ccHHHHHhhcCCceeEEEEe
Q 019699 106 IFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSY-LVVNKEAFSDPRLELVI-NDARAELESRKESYDVIIGD 182 (337)
Q Consensus 106 VLiIG~G~-G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~-f~~~~~~~~d~rv~v~~-~D~~~~l~~~~~~yDvIi~D 182 (337)
|-+||+|. |.....++...+..+|+++|+|++..+ ++.. +... ........++.. .| .+-+ ..-|+||+-
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e~~~~-g~~~dl~~~-~~~~~~~~~I~~t~d-~~~l----~dADiVIit 73 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVEGLPQ-GKALDISQA-APILGSDTKVTGTND-YEDI----AGSDVVVIT 73 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCCcHHH-HHHHHHHHh-hhhcCCCeEEEEcCC-HHHh----CCCCEEEEe
Confidence 46899986 544444444333228999999987542 1111 1110 111122345543 45 2223 346999987
Q ss_pred CCCCCCCCCC-------cCCchHHHHHHHhccccCCCceEEEeC
Q 019699 183 LADPIEGGPC-------YKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (337)
Q Consensus 183 ~~dp~~~~p~-------~~L~t~ef~~~~~~~~L~p~Gvlv~~~ 219 (337)
...|...+.. ..-.-+++++. +.+ ..|++++++.+
T Consensus 74 ~g~p~~~~~~r~e~~~~n~~i~~~i~~~-i~~-~~p~~~iIv~s 115 (300)
T cd01339 74 AGIPRKPGMSRDDLLGTNAKIVKEVAEN-IKK-YAPNAIVIVVT 115 (300)
T ss_pred cCCCCCcCCCHHHHHHHHHHHHHHHHHH-HHH-HCCCeEEEEec
Confidence 6544321110 00011345555 444 55888876554
No 452
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=74.09 E-value=11 Score=36.83 Aligned_cols=72 Identities=29% Similarity=0.381 Sum_probs=41.6
Q ss_pred EEEEecch-h-HHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHH--HhhcCCceeEEEE
Q 019699 106 IFIMGGGE-G-STAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE--LESRKESYDVIIG 181 (337)
Q Consensus 106 VLiIG~G~-G-~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~--l~~~~~~yDvIi~ 181 (337)
||+||+|. | .+++.|+++.+..+|++.+.+.+-.+...+.+ ...+++.+.-|..+. |.+.-+..|+||.
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~-------~~~~~~~~~~d~~~~~~l~~~~~~~dvVin 73 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKL-------LGDRVEAVQVDVNDPESLAELLRGCDVVIN 73 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT---------TTTTEEEEE--TTTHHHHHHHHTTSSEEEE
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhc-------cccceeEEEEecCCHHHHHHHHhcCCEEEE
Confidence 78999841 2 23455555554449999999998876655432 246788888776532 3333355799998
Q ss_pred eCC
Q 019699 182 DLA 184 (337)
Q Consensus 182 D~~ 184 (337)
-+.
T Consensus 74 ~~g 76 (386)
T PF03435_consen 74 CAG 76 (386)
T ss_dssp -SS
T ss_pred CCc
Confidence 764
No 453
>PRK12829 short chain dehydrogenase; Provisional
Probab=74.06 E-value=48 Score=29.76 Aligned_cols=76 Identities=17% Similarity=0.340 Sum_probs=45.1
Q ss_pred CCCCeEEEEecchhHHHHHHHhc--CCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHH---------HH
Q 019699 101 PNPKTIFIMGGGEGSTAREILRH--KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA---------EL 169 (337)
Q Consensus 101 ~~p~~VLiIG~G~G~~~~~ll~~--~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~---------~l 169 (337)
-+.+++|+.|+. |++++.++++ ....+|+++..+++..+...+.++ +.+++++..|..+ .+
T Consensus 9 ~~~~~vlItGa~-g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~-------~~~~~~~~~D~~~~~~~~~~~~~~ 80 (264)
T PRK12829 9 LDGLRVLVTGGA-SGIGRAIAEAFAEAGARVHVCDVSEAALAATAARLP-------GAKVTATVADVADPAQVERVFDTA 80 (264)
T ss_pred cCCCEEEEeCCC-CcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHh-------cCceEEEEccCCCHHHHHHHHHHH
Confidence 356889999885 4454444432 113579999998876554433221 1256777777542 11
Q ss_pred hhcCCceeEEEEeCC
Q 019699 170 ESRKESYDVIIGDLA 184 (337)
Q Consensus 170 ~~~~~~yDvIi~D~~ 184 (337)
.+.-...|+||..+.
T Consensus 81 ~~~~~~~d~vi~~ag 95 (264)
T PRK12829 81 VERFGGLDVLVNNAG 95 (264)
T ss_pred HHHhCCCCEEEECCC
Confidence 112246899998875
No 454
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=74.04 E-value=4.1 Score=42.92 Aligned_cols=34 Identities=18% Similarity=0.354 Sum_probs=25.4
Q ss_pred CCeEEEEecch-hHHHHHHHhcCCCcEEEEEECCh
Q 019699 103 PKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDE 136 (337)
Q Consensus 103 p~~VLiIG~G~-G~~~~~ll~~~~~~~v~~VEid~ 136 (337)
..+||++|+|+ |+.....+...++.+++.||-|.
T Consensus 338 ~~kVLIvGaGGLGs~VA~~La~~GVg~ItlVD~D~ 372 (664)
T TIGR01381 338 QLKVLLLGAGTLGCNVARCLIGWGVRHITFVDNGK 372 (664)
T ss_pred cCeEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCE
Confidence 57999999996 55444444446899999999664
No 455
>PRK06172 short chain dehydrogenase; Provisional
Probab=74.00 E-value=53 Score=29.42 Aligned_cols=75 Identities=20% Similarity=0.194 Sum_probs=45.7
Q ss_pred CCCeEEEEecchhHHHHH----HHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHH------HHhh
Q 019699 102 NPKTIFIMGGGEGSTARE----ILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA------ELES 171 (337)
Q Consensus 102 ~p~~VLiIG~G~G~~~~~----ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~------~l~~ 171 (337)
..+++|+.|++ |+++.+ +++. ..+|..++.+++-.+...+.+... +.++.++..|..+ .++.
T Consensus 6 ~~k~ilItGas-~~iG~~ia~~l~~~--G~~v~~~~r~~~~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~i~~~~~~ 77 (253)
T PRK06172 6 SGKVALVTGGA-AGIGRATALAFARE--GAKVVVADRDAAGGEETVALIREA-----GGEALFVACDVTRDAEVKALVEQ 77 (253)
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHhc-----CCceEEEEcCCCCHHHHHHHHHH
Confidence 45788888875 444444 4443 357999999887655444433221 3467777777632 2222
Q ss_pred ---cCCceeEEEEeCC
Q 019699 172 ---RKESYDVIIGDLA 184 (337)
Q Consensus 172 ---~~~~yDvIi~D~~ 184 (337)
.-.+.|+||..+.
T Consensus 78 ~~~~~g~id~li~~ag 93 (253)
T PRK06172 78 TIAAYGRLDYAFNNAG 93 (253)
T ss_pred HHHHhCCCCEEEECCC
Confidence 2246899998875
No 456
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=73.99 E-value=19 Score=34.20 Aligned_cols=98 Identities=13% Similarity=0.246 Sum_probs=55.0
Q ss_pred CeEEEEecc--hhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhh-----h-ccCCCC-------CCCeEEEEccHHHH
Q 019699 104 KTIFIMGGG--EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLV-----V-NKEAFS-------DPRLELVINDARAE 168 (337)
Q Consensus 104 ~~VLiIG~G--~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~-----~-~~~~~~-------d~rv~v~~~D~~~~ 168 (337)
++|.+||+| ++.++..++++ ..+|+++|.+++.++.+++... . ..+..+ -.++++ ..|..+.
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~--G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~-~~~~~~a 79 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARA--GHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRV-TDSLADA 79 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHC--CCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEE-ECcHHHh
Confidence 479999998 33456666664 3589999999988877654211 0 011110 013333 2343333
Q ss_pred HhhcCCceeEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEE
Q 019699 169 LESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFV 216 (337)
Q Consensus 169 l~~~~~~yDvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv 216 (337)
+ ...|+|+...++.. -...++|+. +.+.+.++-+++
T Consensus 80 ~----~~ad~Vi~avpe~~-------~~k~~~~~~-l~~~~~~~~ii~ 115 (308)
T PRK06129 80 V----ADADYVQESAPENL-------ELKRALFAE-LDALAPPHAILA 115 (308)
T ss_pred h----CCCCEEEECCcCCH-------HHHHHHHHH-HHHhCCCcceEE
Confidence 3 35799998876432 123456676 566655554444
No 457
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=73.97 E-value=49 Score=31.49 Aligned_cols=100 Identities=15% Similarity=0.165 Sum_probs=55.9
Q ss_pred eEEEEecchhHH--HHHHHhcCCCcEEEEEECChHHHHHHHhh---hhhccCCCCCCCeEEEEccHHHHHhhcCCceeEE
Q 019699 105 TIFIMGGGEGST--AREILRHKTVEKVVMCDIDEEVVEFCKSY---LVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (337)
Q Consensus 105 ~VLiIG~G~G~~--~~~ll~~~~~~~v~~VEid~~vi~~a~~~---f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvI 179 (337)
+|.+||+|.=+. +..+.+. ..+|+.++.+++.++..++. .....+..-.+++++. .|..+-+ .+..|+|
T Consensus 2 kI~IiGaGa~G~ala~~L~~~--g~~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~---~~~~Dli 75 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSK--KISVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISVK-SAIDEVL---SDNATCI 75 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHC--CCeEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEe-CCHHHHH---hCCCCEE
Confidence 589999885433 3444443 35799999999887766652 1110000011233332 3433332 2468999
Q ss_pred EEeCCCCCCCCCCcCCchHHHHHHHhcc-ccCCCc-eEEEeCC
Q 019699 180 IGDLADPIEGGPCYKLYTKSFYEFVVKP-RLNPEG-IFVTQAG 220 (337)
Q Consensus 180 i~D~~dp~~~~p~~~L~t~ef~~~~~~~-~L~p~G-vlv~~~~ 220 (337)
|+-.++. ...+.++. ++. .++++. +++++.|
T Consensus 76 iiavks~---------~~~~~l~~-l~~~~l~~~~~vv~~~nG 108 (326)
T PRK14620 76 ILAVPTQ---------QLRTICQQ-LQDCHLKKNTPILICSKG 108 (326)
T ss_pred EEEeCHH---------HHHHHHHH-HHHhcCCCCCEEEEEEcC
Confidence 9987532 23566777 666 778776 4444443
No 458
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=73.60 E-value=54 Score=30.94 Aligned_cols=64 Identities=16% Similarity=0.244 Sum_probs=36.0
Q ss_pred cCccccccCChhhHHHHHHhHHHhcCCCCCeEEEEecchhHHH--HHHHhcCCCcEEEEEECChHHHHH
Q 019699 75 DGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTA--REILRHKTVEKVVMCDIDEEVVEF 141 (337)
Q Consensus 75 DG~~q~~~~de~~Y~e~l~~~~l~~~~~p~~VLiIG~G~G~~~--~~ll~~~~~~~v~~VEid~~vi~~ 141 (337)
||.+.-..-|...+-+.|.. .....+.++||+||+|+-+-+ ..+++ .+..+|++++.+++=.+.
T Consensus 101 ~g~l~G~NTD~~Gf~~~L~~--~~~~~~~k~vlilGaGGaarAi~~aL~~-~g~~~i~i~nR~~~ka~~ 166 (283)
T PRK14027 101 TGHTTGHNTDVSGFGRGMEE--GLPNAKLDSVVQVGAGGVGNAVAYALVT-HGVQKLQVADLDTSRAQA 166 (283)
T ss_pred CCcEEEEcCCHHHHHHHHHh--cCcCcCCCeEEEECCcHHHHHHHHHHHH-CCCCEEEEEcCCHHHHHH
Confidence 45444333444344444432 111234689999999765433 33333 456789999998754433
No 459
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=73.58 E-value=29 Score=32.65 Aligned_cols=38 Identities=16% Similarity=0.178 Sum_probs=25.1
Q ss_pred CCCeEEEEecchhHHH-HHHHhcCCCcEEEEEECChHHH
Q 019699 102 NPKTIFIMGGGEGSTA-REILRHKTVEKVVMCDIDEEVV 139 (337)
Q Consensus 102 ~p~~VLiIG~G~G~~~-~~ll~~~~~~~v~~VEid~~vi 139 (337)
+.++||+||+|+-+-+ ...+...+..+|+++.-+++=.
T Consensus 124 ~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka 162 (282)
T TIGR01809 124 AGFRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKL 162 (282)
T ss_pred CCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHH
Confidence 5689999998754332 2222334677899999986533
No 460
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=73.55 E-value=76 Score=29.26 Aligned_cols=16 Identities=38% Similarity=0.515 Sum_probs=12.3
Q ss_pred HhhcCCceeEEEEeCC
Q 019699 169 LESRKESYDVIIGDLA 184 (337)
Q Consensus 169 l~~~~~~yDvIi~D~~ 184 (337)
+....++||+||+|.+
T Consensus 206 l~~l~~~yD~ViiD~p 221 (274)
T TIGR03029 206 LNKVMGDYDVVIVDTP 221 (274)
T ss_pred HHHHHhcCCEEEEeCC
Confidence 3334578999999986
No 461
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=73.04 E-value=23 Score=33.67 Aligned_cols=97 Identities=18% Similarity=0.140 Sum_probs=53.7
Q ss_pred CeEEEEecch-hH-HHHHHHhcCCCcEEEEEECChHHHHHHHhh--hhhccCCCCCCCeEE--EEccHHHHHhhcCCcee
Q 019699 104 KTIFIMGGGE-GS-TAREILRHKTVEKVVMCDIDEEVVEFCKSY--LVVNKEAFSDPRLEL--VINDARAELESRKESYD 177 (337)
Q Consensus 104 ~~VLiIG~G~-G~-~~~~ll~~~~~~~v~~VEid~~vi~~a~~~--f~~~~~~~~d~rv~v--~~~D~~~~l~~~~~~yD 177 (337)
.+|++||+|. |+ ++..+.+. ...|+.|.-.++-++..++. +.... ......+ ...+ ....+.||
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~--G~~V~lv~r~~~~~~~i~~~~Gl~i~~---~g~~~~~~~~~~~-----~~~~~~~D 72 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARA--GLPVRLILRDRQRLAAYQQAGGLTLVE---QGQASLYAIPAET-----ADAAEPIH 72 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhC--CCCeEEEEechHHHHHHhhcCCeEEee---CCcceeeccCCCC-----cccccccC
Confidence 4799999873 44 44555443 35799999887655555432 11110 0111111 0111 11125799
Q ss_pred EEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceE-EEeCC
Q 019699 178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIF-VTQAG 220 (337)
Q Consensus 178 vIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvl-v~~~~ 220 (337)
+||+-.-. ..+.+.++. ++.++.++..+ .+|-|
T Consensus 73 ~viv~vK~---------~~~~~al~~-l~~~l~~~t~vv~lQNG 106 (305)
T PRK05708 73 RLLLACKA---------YDAEPAVAS-LAHRLAPGAELLLLQNG 106 (305)
T ss_pred EEEEECCH---------HhHHHHHHH-HHhhCCCCCEEEEEeCC
Confidence 99988632 224566777 78899998854 45544
No 462
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=72.97 E-value=9.6 Score=36.18 Aligned_cols=34 Identities=21% Similarity=0.338 Sum_probs=23.5
Q ss_pred CCCeEEEEecchhHH--HHHHHhcCCCcEEEEEECCh
Q 019699 102 NPKTIFIMGGGEGST--AREILRHKTVEKVVMCDIDE 136 (337)
Q Consensus 102 ~p~~VLiIG~G~G~~--~~~ll~~~~~~~v~~VEid~ 136 (337)
...+||++|+|+-+. +..++ ..++.+++.+|-|.
T Consensus 18 ~~s~VLIvG~gGLG~EiaKnLa-laGVg~itI~D~d~ 53 (286)
T cd01491 18 QKSNVLISGLGGLGVEIAKNLI-LAGVKSVTLHDTKP 53 (286)
T ss_pred hcCcEEEEcCCHHHHHHHHHHH-HcCCCeEEEEcCCc
Confidence 346899999974322 33333 35789999999875
No 463
>PRK07102 short chain dehydrogenase; Provisional
Probab=72.95 E-value=22 Score=31.79 Aligned_cols=74 Identities=19% Similarity=0.147 Sum_probs=44.0
Q ss_pred CeEEEEecchhHHH----HHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHH------HHhhcC
Q 019699 104 KTIFIMGGGEGSTA----REILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA------ELESRK 173 (337)
Q Consensus 104 ~~VLiIG~G~G~~~----~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~------~l~~~~ 173 (337)
++||+.|+. |+++ +++++. ..+|++++.++.-.+...+.+... ...+++++..|..+ +++...
T Consensus 2 ~~vlItGas-~giG~~~a~~l~~~--G~~Vi~~~r~~~~~~~~~~~~~~~----~~~~~~~~~~Dl~~~~~~~~~~~~~~ 74 (243)
T PRK07102 2 KKILIIGAT-SDIARACARRYAAA--GARLYLAARDVERLERLADDLRAR----GAVAVSTHELDILDTASHAAFLDSLP 74 (243)
T ss_pred cEEEEEcCC-cHHHHHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHh----cCCeEEEEecCCCChHHHHHHHHHHh
Confidence 578999865 4444 444443 357999999886544332222211 13577888777643 333333
Q ss_pred CceeEEEEeCC
Q 019699 174 ESYDVIIGDLA 184 (337)
Q Consensus 174 ~~yDvIi~D~~ 184 (337)
.++|+++..+.
T Consensus 75 ~~~d~vv~~ag 85 (243)
T PRK07102 75 ALPDIVLIAVG 85 (243)
T ss_pred hcCCEEEECCc
Confidence 46899998764
No 464
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=72.92 E-value=48 Score=31.88 Aligned_cols=99 Identities=17% Similarity=0.225 Sum_probs=57.0
Q ss_pred CCCCeEEEEecch-hHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhh-cCCceeE
Q 019699 101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDV 178 (337)
Q Consensus 101 ~~p~~VLiIG~G~-G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~-~~~~yDv 178 (337)
...++||+.|+|. |..+..+++..+...+++++.+++-.+.++++ ... ..+ .....+..+.+.+ ....+|+
T Consensus 185 ~~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~~-g~~-~~i-----~~~~~~~~~~v~~~~~~~~d~ 257 (365)
T cd08278 185 RPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKEL-GAT-HVI-----NPKEEDLVAAIREITGGGVDY 257 (365)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc-CCc-EEe-----cCCCcCHHHHHHHHhCCCCcE
Confidence 3468899997643 44556666766666799999999888877763 210 000 0001122222222 2456998
Q ss_pred EEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (337)
Q Consensus 179 Ii~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~ 219 (337)
|+--... + ..+.. +.+.|+++|.++.-.
T Consensus 258 vld~~g~-----~-------~~~~~-~~~~l~~~G~~v~~g 285 (365)
T cd08278 258 ALDTTGV-----P-------AVIEQ-AVDALAPRGTLALVG 285 (365)
T ss_pred EEECCCC-----c-------HHHHH-HHHHhccCCEEEEeC
Confidence 8843321 1 12334 467899999987643
No 465
>PLN02427 UDP-apiose/xylose synthase
Probab=72.84 E-value=14 Score=35.99 Aligned_cols=78 Identities=21% Similarity=0.260 Sum_probs=44.6
Q ss_pred CCCeEEEEecchhHHHHHHHhc---CCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHH--HhhcCCce
Q 019699 102 NPKTIFIMGGGEGSTAREILRH---KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE--LESRKESY 176 (337)
Q Consensus 102 ~p~~VLiIG~G~G~~~~~ll~~---~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~--l~~~~~~y 176 (337)
++++||+.|+ +|.+++.+++. .+..+|.+++.++.-++. ..+.... ...++++++.+|..+. +.+.-..+
T Consensus 13 ~~~~VlVTGg-tGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~~---l~~~~~~-~~~~~~~~~~~Dl~d~~~l~~~~~~~ 87 (386)
T PLN02427 13 KPLTICMIGA-GGFIGSHLCEKLMTETPHKVLALDVYNDKIKH---LLEPDTV-PWSGRIQFHRINIKHDSRLEGLIKMA 87 (386)
T ss_pred cCcEEEEECC-cchHHHHHHHHHHhcCCCEEEEEecCchhhhh---hhccccc-cCCCCeEEEEcCCCChHHHHHHhhcC
Confidence 4578999886 56565555443 123578988876543221 1111000 0125799999987542 33323458
Q ss_pred eEEEEeCC
Q 019699 177 DVIIGDLA 184 (337)
Q Consensus 177 DvIi~D~~ 184 (337)
|+||.-+.
T Consensus 88 d~ViHlAa 95 (386)
T PLN02427 88 DLTINLAA 95 (386)
T ss_pred CEEEEccc
Confidence 99998765
No 466
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=72.83 E-value=43 Score=31.82 Aligned_cols=99 Identities=19% Similarity=0.202 Sum_probs=56.9
Q ss_pred CCCCeEEEEecch-hHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhh-cC-Ccee
Q 019699 101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RK-ESYD 177 (337)
Q Consensus 101 ~~p~~VLiIG~G~-G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~-~~-~~yD 177 (337)
...++||+.|+|. |..+..+++..+..+|.+++.+++-.+.++++ +.. .-+.....|..+.+.+ .. +.+|
T Consensus 171 ~~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~~-ga~------~~i~~~~~~~~~~l~~~~~~~~~d 243 (351)
T cd08233 171 KPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEEL-GAT------IVLDPTEVDVVAEVRKLTGGGGVD 243 (351)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-CCC------EEECCCccCHHHHHHHHhCCCCCC
Confidence 4567999997642 33345556655555899999999988888764 211 1111112233333432 22 3499
Q ss_pred EEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEeC
Q 019699 178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (337)
Q Consensus 178 vIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~~ 219 (337)
+|+--... + .-++. +.+.|+++|.++.-.
T Consensus 244 ~vid~~g~-----~-------~~~~~-~~~~l~~~G~~v~~g 272 (351)
T cd08233 244 VSFDCAGV-----Q-------ATLDT-AIDALRPRGTAVNVA 272 (351)
T ss_pred EEEECCCC-----H-------HHHHH-HHHhccCCCEEEEEc
Confidence 99854321 1 12344 457899999887643
No 467
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=72.74 E-value=9 Score=36.82 Aligned_cols=81 Identities=16% Similarity=0.130 Sum_probs=44.1
Q ss_pred CCCeEEEEecchhHHHHHHHhcC--CCcEEEEEECChHHHHH-HHhhhhhccCCCCCCCeEEEEccHHH--HHhhcCCce
Q 019699 102 NPKTIFIMGGGEGSTAREILRHK--TVEKVVMCDIDEEVVEF-CKSYLVVNKEAFSDPRLELVINDARA--ELESRKESY 176 (337)
Q Consensus 102 ~p~~VLiIG~G~G~~~~~ll~~~--~~~~v~~VEid~~vi~~-a~~~f~~~~~~~~d~rv~v~~~D~~~--~l~~~~~~y 176 (337)
..++||+.|+ +|.++..+.++. ...+|++++....-... ......... ...-.+++++.+|..+ .+...-+..
T Consensus 14 ~~~~vlVtGa-tGfiG~~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~Di~d~~~l~~~~~~~ 91 (348)
T PRK15181 14 APKRWLITGV-AGFIGSGLLEELLFLNQTVIGLDNFSTGYQHNLDDVRTSVS-EEQWSRFIFIQGDIRKFTDCQKACKNV 91 (348)
T ss_pred cCCEEEEECC-ccHHHHHHHHHHHHCCCEEEEEeCCCCcchhhhhhhhhccc-cccCCceEEEEccCCCHHHHHHHhhCC
Confidence 4478999987 565554444431 13579999875432111 111111100 0012468889999864 233323458
Q ss_pred eEEEEeCC
Q 019699 177 DVIIGDLA 184 (337)
Q Consensus 177 DvIi~D~~ 184 (337)
|+||.-+.
T Consensus 92 d~ViHlAa 99 (348)
T PRK15181 92 DYVLHQAA 99 (348)
T ss_pred CEEEECcc
Confidence 99998775
No 468
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=72.63 E-value=33 Score=28.36 Aligned_cols=95 Identities=23% Similarity=0.365 Sum_probs=51.5
Q ss_pred EEEEecch-hHHHHHHHhcCCCcEEEEEECChHHHHHHHhh-hhhccCCCCCCCe--EEEEccHHHHHhhcCCceeEEEE
Q 019699 106 IFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSY-LVVNKEAFSDPRL--ELVINDARAELESRKESYDVIIG 181 (337)
Q Consensus 106 VLiIG~G~-G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~-f~~~~~~~~d~rv--~v~~~D~~~~l~~~~~~yDvIi~ 181 (337)
|+++|+|. |.+....++. ...+|+.+.-.+ -.+..++. +...... .+..+ .....+. ....+.||+||+
T Consensus 1 I~I~G~GaiG~~~a~~L~~-~g~~V~l~~r~~-~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~----~~~~~~~D~viv 73 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQ-AGHDVTLVSRSP-RLEAIKEQGLTITGPD-GDETVQPPIVISAP----SADAGPYDLVIV 73 (151)
T ss_dssp EEEESTSHHHHHHHHHHHH-TTCEEEEEESHH-HHHHHHHHCEEEEETT-EEEEEEEEEEESSH----GHHHSTESEEEE
T ss_pred CEEECcCHHHHHHHHHHHH-CCCceEEEEccc-cHHhhhheeEEEEecc-cceecccccccCcc----hhccCCCcEEEE
Confidence 68899884 3333333333 357899999988 55544432 2221100 01111 1111111 123478999999
Q ss_pred eCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEE
Q 019699 182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT 217 (337)
Q Consensus 182 D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~ 217 (337)
-.-. .-..+.++. ++..+.++..+++
T Consensus 74 ~vKa---------~~~~~~l~~-l~~~~~~~t~iv~ 99 (151)
T PF02558_consen 74 AVKA---------YQLEQALQS-LKPYLDPNTTIVS 99 (151)
T ss_dssp -SSG---------GGHHHHHHH-HCTGEETTEEEEE
T ss_pred Eecc---------cchHHHHHH-HhhccCCCcEEEE
Confidence 8642 224567787 7999999975544
No 469
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=72.50 E-value=14 Score=32.67 Aligned_cols=71 Identities=27% Similarity=0.407 Sum_probs=43.4
Q ss_pred eEEEEecchhHHHHHHHh----c--CCCcEEEEEECChHHHHH----HHhhhhhccCCCCCCCeEE-EEccHHHHHhhcC
Q 019699 105 TIFIMGGGEGSTAREILR----H--KTVEKVVMCDIDEEVVEF----CKSYLVVNKEAFSDPRLEL-VINDARAELESRK 173 (337)
Q Consensus 105 ~VLiIG~G~G~~~~~ll~----~--~~~~~v~~VEid~~vi~~----a~~~f~~~~~~~~d~rv~v-~~~D~~~~l~~~~ 173 (337)
|+.+||+|+-.++..+.. . .+..++..+|+|++=++. +++.+... .+.+++ ...|-++-|+
T Consensus 1 KI~iIGaGS~~~~~~l~~~l~~~~~l~~~ei~L~Did~~RL~~~~~~~~~~~~~~-----~~~~~v~~ttd~~eAl~--- 72 (183)
T PF02056_consen 1 KITIIGAGSTYFPLLLLGDLLRTEELSGSEIVLMDIDEERLEIVERLARRMVEEA-----GADLKVEATTDRREALE--- 72 (183)
T ss_dssp EEEEETTTSCCHHHHHHHHHHCTTTSTEEEEEEE-SCHHHHHHHHHHHHHHHHHC-----TTSSEEEEESSHHHHHT---
T ss_pred CEEEECCchHhhHHHHHHHHhcCccCCCcEEEEEcCCHHHHHHHHHHHHHHHHhc-----CCCeEEEEeCCHHHHhC---
Confidence 578999998877654442 1 345689999999976654 44444332 234554 3467666664
Q ss_pred CceeEEEEeCC
Q 019699 174 ESYDVIIGDLA 184 (337)
Q Consensus 174 ~~yDvIi~D~~ 184 (337)
-.|.||+-.-
T Consensus 73 -gADfVi~~ir 82 (183)
T PF02056_consen 73 -GADFVINQIR 82 (183)
T ss_dssp -TESEEEE---
T ss_pred -CCCEEEEEee
Confidence 3788887553
No 470
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=72.37 E-value=7.2 Score=36.27 Aligned_cols=42 Identities=24% Similarity=0.210 Sum_probs=29.3
Q ss_pred CCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhh
Q 019699 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSY 145 (337)
Q Consensus 102 ~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~ 145 (337)
++++||.+|+|+|-.+..++.+. ..++.+-|+-. +++..+..
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~-~~~v~ltD~~~-~~~~L~~~ 127 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLL-GAEVVLTDLPK-VVENLKFN 127 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHh-cceeccCCchh-hHHHHHHh
Confidence 57789999999997777777764 46777777744 44444433
No 471
>PRK06153 hypothetical protein; Provisional
Probab=72.27 E-value=4.6 Score=40.00 Aligned_cols=34 Identities=26% Similarity=0.412 Sum_probs=26.4
Q ss_pred CCCeEEEEecc-hhHHHHHHHhcCCCcEEEEEECC
Q 019699 102 NPKTIFIMGGG-EGSTAREILRHKTVEKVVMCDID 135 (337)
Q Consensus 102 ~p~~VLiIG~G-~G~~~~~ll~~~~~~~v~~VEid 135 (337)
...+|++||+| .|+...+.+.+-++.+++.||-|
T Consensus 175 ~~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D 209 (393)
T PRK06153 175 EGQRIAIIGLGGTGSYILDLVAKTPVREIHLFDGD 209 (393)
T ss_pred hhCcEEEEcCCccHHHHHHHHHHcCCCEEEEECCC
Confidence 45799999987 45556666666689999999988
No 472
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=72.20 E-value=40 Score=25.51 Aligned_cols=87 Identities=17% Similarity=0.212 Sum_probs=51.1
Q ss_pred eEEEEecchh--HHHHHHHhcC-CCcEEEEE-ECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEEE
Q 019699 105 TIFIMGGGEG--STAREILRHK-TVEKVVMC-DIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (337)
Q Consensus 105 ~VLiIG~G~G--~~~~~ll~~~-~~~~v~~V-Eid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvIi 180 (337)
+|.+||+|.= .+++-++++. ...+|..+ +.+++-.+..++.++ +++...|-.+.++ ..|+||
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~----------~~~~~~~~~~~~~----~advvi 66 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYG----------VQATADDNEEAAQ----EADVVI 66 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCT----------TEEESEEHHHHHH----HTSEEE
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhc----------cccccCChHHhhc----cCCEEE
Confidence 5788988843 3445555542 23688856 999998776655433 3344445566664 479999
Q ss_pred EeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEE
Q 019699 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFV 216 (337)
Q Consensus 181 ~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv 216 (337)
+-.+.. . -.+.++. + ..+.++.+++
T Consensus 67 lav~p~-------~--~~~v~~~-i-~~~~~~~~vi 91 (96)
T PF03807_consen 67 LAVKPQ-------Q--LPEVLSE-I-PHLLKGKLVI 91 (96)
T ss_dssp E-S-GG-------G--HHHHHHH-H-HHHHTTSEEE
T ss_pred EEECHH-------H--HHHHHHH-H-hhccCCCEEE
Confidence 987521 1 2356665 5 4566666554
No 473
>PRK10458 DNA cytosine methylase; Provisional
Probab=72.18 E-value=13 Score=37.87 Aligned_cols=127 Identities=16% Similarity=0.202 Sum_probs=76.7
Q ss_pred CCeEEEEecchhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHH--------------
Q 019699 103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE-------------- 168 (337)
Q Consensus 103 p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~-------------- 168 (337)
.-+++++-+|.|++..-+-.. +...|-++|+|+...+.-+.+++. +|...++.+|..+.
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~a-G~~~v~a~Eid~~A~~TY~~N~~~------~p~~~~~~~DI~~i~~~~~~~~~~~~~~ 160 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAI-GGQCVFTSEWNKHAVRTYKANWYC------DPATHRFNEDIRDITLSHKEGVSDEEAA 160 (467)
T ss_pred CceEEEeCcCccHHHHHHHHc-CCEEEEEEechHHHHHHHHHHcCC------CCccceeccChhhCccccccccchhhhh
Confidence 458999999999998887664 456778999999999888887632 23334444555443
Q ss_pred --HhhcCCceeEEEEeCC-CCCC-CCC----------------CcCCchHHHHHHHhccccCCCceEEEeCCCCCcC--C
Q 019699 169 --LESRKESYDVIIGDLA-DPIE-GGP----------------CYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIF--S 226 (337)
Q Consensus 169 --l~~~~~~yDvIi~D~~-dp~~-~~p----------------~~~L~t~ef~~~~~~~~L~p~Gvlv~~~~~p~~~--~ 226 (337)
+.......|+++.-++ -+.. .+. -..|+ .+|.+. + +.++|.-+++=|+. +.. .
T Consensus 161 ~~~~~~~p~~DvL~gGpPCQ~FS~AG~~k~~~~gr~~g~~~d~rg~Lf-~~~~ri-i-~~~kPk~fvlENV~--gl~s~~ 235 (467)
T PRK10458 161 EHIRQHIPDHDVLLAGFPCQPFSLAGVSKKNSLGRAHGFECETQGTLF-FDVARI-I-DAKRPAIFVLENVK--NLKSHD 235 (467)
T ss_pred hhhhccCCCCCEEEEcCCCCccchhcccccccccccccccCCccccHH-HHHHHH-H-HHhCCCEEEEeCcH--hhhccc
Confidence 1111235899888775 2221 111 00122 456664 3 46788866665542 212 2
Q ss_pred ChhHHHHHHHHHhhh
Q 019699 227 HTEVFSCIYNTLRQV 241 (337)
Q Consensus 227 ~~~~~~~i~~~l~~v 241 (337)
....+..+++.|.+.
T Consensus 236 ~g~~f~~i~~~L~~l 250 (467)
T PRK10458 236 KGKTFRIIMQTLDEL 250 (467)
T ss_pred ccHHHHHHHHHHHHc
Confidence 334677788888765
No 474
>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1. APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.
Probab=72.16 E-value=12 Score=37.56 Aligned_cols=33 Identities=15% Similarity=0.323 Sum_probs=25.3
Q ss_pred CCCeEEEEecchhHHHHHHHhc---CCCcEEEEEECCh
Q 019699 102 NPKTIFIMGGGEGSTAREILRH---KTVEKVVMCDIDE 136 (337)
Q Consensus 102 ~p~~VLiIG~G~G~~~~~ll~~---~~~~~v~~VEid~ 136 (337)
...+||+||+|+ ++.|+++. +++.+++.||-+.
T Consensus 19 ~~s~VlliG~gg--lGsEilKNLvL~GIg~~tIvD~~~ 54 (425)
T cd01493 19 ESAHVCLLNATA--TGTEILKNLVLPGIGSFTIVDGSK 54 (425)
T ss_pred hhCeEEEEcCcH--HHHHHHHHHHHcCCCeEEEECCCc
Confidence 357899999864 66666663 7899999998764
No 475
>PRK07454 short chain dehydrogenase; Provisional
Probab=72.04 E-value=34 Score=30.45 Aligned_cols=75 Identities=11% Similarity=0.097 Sum_probs=44.3
Q ss_pred CCCeEEEEecchhHHH----HHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHH------Hh-
Q 019699 102 NPKTIFIMGGGEGSTA----REILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE------LE- 170 (337)
Q Consensus 102 ~p~~VLiIG~G~G~~~----~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~------l~- 170 (337)
+.+++|+.|+ +|+++ ++++++ ..+|.+++.++.-.+...+.... ...++.++..|..+. ++
T Consensus 5 ~~k~vlItG~-sg~iG~~la~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~~~~D~~~~~~~~~~~~~ 76 (241)
T PRK07454 5 SMPRALITGA-SSGIGKATALAFAKA--GWDLALVARSQDALEALAAELRS-----TGVKAAAYSIDLSNPEAIAPGIAE 76 (241)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHh-----CCCcEEEEEccCCCHHHHHHHHHH
Confidence 4578888886 44444 444443 35899999988655433332221 134677788776322 11
Q ss_pred --hcCCceeEEEEeCC
Q 019699 171 --SRKESYDVIIGDLA 184 (337)
Q Consensus 171 --~~~~~yDvIi~D~~ 184 (337)
+...+.|+||..+.
T Consensus 77 ~~~~~~~id~lv~~ag 92 (241)
T PRK07454 77 LLEQFGCPDVLINNAG 92 (241)
T ss_pred HHHHcCCCCEEEECCC
Confidence 12246899998775
No 476
>PLN00203 glutamyl-tRNA reductase
Probab=71.65 E-value=53 Score=33.93 Aligned_cols=101 Identities=15% Similarity=0.195 Sum_probs=54.6
Q ss_pred CCeEEEEecchh--HHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEE-ccHHHHHhhcCCceeEE
Q 019699 103 PKTIFIMGGGEG--STAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI-NDARAELESRKESYDVI 179 (337)
Q Consensus 103 p~~VLiIG~G~G--~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~-~D~~~~l~~~~~~yDvI 179 (337)
.++|++||+|.= .+++.+.. .+..+|++++.+++-.+...+.++. ..+.+.. .|..+.+ ...|+|
T Consensus 266 ~kkVlVIGAG~mG~~~a~~L~~-~G~~~V~V~nRs~era~~La~~~~g-------~~i~~~~~~dl~~al----~~aDVV 333 (519)
T PLN00203 266 SARVLVIGAGKMGKLLVKHLVS-KGCTKMVVVNRSEERVAALREEFPD-------VEIIYKPLDEMLACA----AEADVV 333 (519)
T ss_pred CCEEEEEeCHHHHHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHhCC-------CceEeecHhhHHHHH----hcCCEE
Confidence 689999999632 22333333 3556899999998766544433221 1122221 2322333 468999
Q ss_pred EEeCCCCCCCCCCcCCchHHHHHHHhccccCC--CceEEEeCCCC
Q 019699 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNP--EGIFVTQAGPA 222 (337)
Q Consensus 180 i~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p--~Gvlv~~~~~p 222 (337)
|+-.+.+ ..+++.+.++. +...=+. .-.+++...-|
T Consensus 334 IsAT~s~------~pvI~~e~l~~-~~~~~~~~~~~~~~IDLAvP 371 (519)
T PLN00203 334 FTSTSSE------TPLFLKEHVEA-LPPASDTVGGKRLFVDISVP 371 (519)
T ss_pred EEccCCC------CCeeCHHHHHH-hhhcccccCCCeEEEEeCCC
Confidence 9876533 24667777776 3211111 12566665443
No 477
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=71.54 E-value=54 Score=30.78 Aligned_cols=99 Identities=14% Similarity=0.212 Sum_probs=56.6
Q ss_pred CCCCeEEEEecch-hHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCceeEE
Q 019699 101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (337)
Q Consensus 101 ~~p~~VLiIG~G~-G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDvI 179 (337)
....+||+.|+|. |..+..++++....+|+++.-+++-.+.++++ ... ..++ .+- ..+..+.+.+..+.+|++
T Consensus 161 ~~g~~vlV~g~g~vG~~~~~la~~~~g~~v~~~~~~~~~~~~~~~~-g~~-~v~~-~~~---~~~~~~~v~~~~~~~d~v 234 (338)
T PRK09422 161 KPGQWIAIYGAGGLGNLALQYAKNVFNAKVIAVDINDDKLALAKEV-GAD-LTIN-SKR---VEDVAKIIQEKTGGAHAA 234 (338)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHc-CCc-EEec-ccc---cccHHHHHHHhcCCCcEE
Confidence 4567999998542 33445555642235799999999988888664 221 0010 000 022233344333358877
Q ss_pred EEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (337)
Q Consensus 180 i~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~ 218 (337)
+.+...+ +.+.. +.+.|+++|.++.-
T Consensus 235 i~~~~~~------------~~~~~-~~~~l~~~G~~v~~ 260 (338)
T PRK09422 235 VVTAVAK------------AAFNQ-AVDAVRAGGRVVAV 260 (338)
T ss_pred EEeCCCH------------HHHHH-HHHhccCCCEEEEE
Confidence 7665321 23444 56789999998754
No 478
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=71.53 E-value=22 Score=32.12 Aligned_cols=77 Identities=18% Similarity=0.186 Sum_probs=45.2
Q ss_pred CCCeEEEEecchhHHHHHHHhcC--CCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHH---------HHh
Q 019699 102 NPKTIFIMGGGEGSTAREILRHK--TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA---------ELE 170 (337)
Q Consensus 102 ~p~~VLiIG~G~G~~~~~ll~~~--~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~---------~l~ 170 (337)
..+++|+.|+ +|+++..++++. ...+|.+++-++.-.+...+.+... ..++.++..|..+ .+.
T Consensus 11 ~~k~ilItGa-~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~-----~~~~~~~~~Dl~d~~~i~~~~~~~~ 84 (259)
T PRK08213 11 SGKTALVTGG-SRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEAL-----GIDALWIAADVADEADIERLAEETL 84 (259)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhc-----CCeEEEEEccCCCHHHHHHHHHHHH
Confidence 3578888885 455554444321 1357999999887665555443221 2456677776642 111
Q ss_pred hcCCceeEEEEeCC
Q 019699 171 SRKESYDVIIGDLA 184 (337)
Q Consensus 171 ~~~~~yDvIi~D~~ 184 (337)
+.....|+||..+.
T Consensus 85 ~~~~~id~vi~~ag 98 (259)
T PRK08213 85 ERFGHVDILVNNAG 98 (259)
T ss_pred HHhCCCCEEEECCC
Confidence 12246899999875
No 479
>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein. Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.
Probab=71.53 E-value=16 Score=38.33 Aligned_cols=76 Identities=16% Similarity=0.076 Sum_probs=44.7
Q ss_pred CCCeEEEEecch-hHHHHHHHhcCCCcEEEEEECChH---------HHHHHHhhhhhccCCCCCCCeEEEEcc---HHHH
Q 019699 102 NPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEE---------VVEFCKSYLVVNKEAFSDPRLELVIND---ARAE 168 (337)
Q Consensus 102 ~p~~VLiIG~G~-G~~~~~ll~~~~~~~v~~VEid~~---------vi~~a~~~f~~~~~~~~d~rv~v~~~D---~~~~ 168 (337)
+..+|++||.|+ |......+...+..++.+||-|.. .++.|+++ |+.+.+..-+ ...+
T Consensus 128 R~akVlVlG~Gg~~s~lv~sL~~sG~~~I~~vd~D~v~SNlnRIgEl~e~A~~~---------n~~v~v~~i~~~~~~dl 198 (637)
T TIGR03693 128 RNAKILAAGSGDFLTKLVRSLIDSGFPRFHAIVTDAEEHALDRIHELAEIAEET---------DDALLVQEIDFAEDQHL 198 (637)
T ss_pred hcccEEEEecCchHHHHHHHHHhcCCCcEEEEeccccchhhhHHHHHHHHHHHh---------CCCCceEeccCCcchhH
Confidence 357899999998 444444444567889999987764 34455541 2333322211 1122
Q ss_pred HhhcCCceeEEEEeCCCCC
Q 019699 169 LESRKESYDVIIGDLADPI 187 (337)
Q Consensus 169 l~~~~~~yDvIi~D~~dp~ 187 (337)
. ..-+.||+||.=+.+|.
T Consensus 199 ~-ev~~~~DiVi~vsDdy~ 216 (637)
T TIGR03693 199 H-EAFEPADWVLYVSDNGD 216 (637)
T ss_pred H-HhhcCCcEEEEECCCCC
Confidence 1 22267999998776554
No 480
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=71.16 E-value=50 Score=31.34 Aligned_cols=98 Identities=16% Similarity=0.126 Sum_probs=50.9
Q ss_pred CCCeEEEEecch--hHHHHHHHhcCCCcEEEEEECChHHHHHHHhh-hhhccCCCCCCCeEEEEccHHHHHhhcCCceeE
Q 019699 102 NPKTIFIMGGGE--GSTAREILRHKTVEKVVMCDIDEEVVEFCKSY-LVVNKEAFSDPRLELVINDARAELESRKESYDV 178 (337)
Q Consensus 102 ~p~~VLiIG~G~--G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~-f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yDv 178 (337)
...+|++||+|. +.++..+.+. ..+|+.+.-++. +..++. +.... .+...++..-.+..... ....||+
T Consensus 4 ~~m~I~IiG~GaiG~~lA~~L~~~--g~~V~~~~r~~~--~~~~~~g~~~~~---~~~~~~~~~~~~~~~~~-~~~~~D~ 75 (313)
T PRK06249 4 ETPRIGIIGTGAIGGFYGAMLARA--GFDVHFLLRSDY--EAVRENGLQVDS---VHGDFHLPPVQAYRSAE-DMPPCDW 75 (313)
T ss_pred cCcEEEEECCCHHHHHHHHHHHHC--CCeEEEEEeCCH--HHHHhCCeEEEe---CCCCeeecCceEEcchh-hcCCCCE
Confidence 346899999883 3344444443 367888888762 333322 11110 01111111000000111 1257999
Q ss_pred EEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEE
Q 019699 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT 217 (337)
Q Consensus 179 Ii~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~ 217 (337)
||+-..... +.+.++. ++..++++++++.
T Consensus 76 vilavK~~~---------~~~~~~~-l~~~~~~~~~iv~ 104 (313)
T PRK06249 76 VLVGLKTTA---------NALLAPL-IPQVAAPDAKVLL 104 (313)
T ss_pred EEEEecCCC---------hHhHHHH-HhhhcCCCCEEEE
Confidence 999875321 2456666 6788999996643
No 481
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=71.00 E-value=24 Score=33.04 Aligned_cols=73 Identities=21% Similarity=0.271 Sum_probs=40.8
Q ss_pred CCCCeEEEEecchhHHHHHHH---hcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhcCCcee
Q 019699 101 PNPKTIFIMGGGEGSTAREIL---RHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYD 177 (337)
Q Consensus 101 ~~p~~VLiIG~G~G~~~~~ll---~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~~~~yD 177 (337)
...++||++|+| ++++.++ ...+..+|+++..+++-.+...+.+... ..+.+ ..+..+ .-..+|
T Consensus 121 ~~~k~vlVlGaG--g~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~~------~~~~~-~~~~~~----~~~~~D 187 (278)
T PRK00258 121 LKGKRILILGAG--GAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGAL------GKAEL-DLELQE----ELADFD 187 (278)
T ss_pred CCCCEEEEEcCc--HHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhc------cceee-cccchh----ccccCC
Confidence 456899999985 3333332 2344578999999987554443333211 11232 112111 225699
Q ss_pred EEEEeCCCC
Q 019699 178 VIIGDLADP 186 (337)
Q Consensus 178 vIi~D~~dp 186 (337)
+||.-.+.+
T Consensus 188 ivInaTp~g 196 (278)
T PRK00258 188 LIINATSAG 196 (278)
T ss_pred EEEECCcCC
Confidence 999887643
No 482
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=70.99 E-value=26 Score=33.27 Aligned_cols=75 Identities=23% Similarity=0.271 Sum_probs=42.9
Q ss_pred EEEEecch-hHHHHHHHhcCC-CcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEE-ccHHHHHhhcCCceeEEEEe
Q 019699 106 IFIMGGGE-GSTAREILRHKT-VEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI-NDARAELESRKESYDVIIGD 182 (337)
Q Consensus 106 VLiIG~G~-G~~~~~ll~~~~-~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~-~D~~~~l~~~~~~yDvIi~D 182 (337)
|.+||+|. |......+...+ ..+++.+|++++.++....-+......+ ...++.. +| .+-+ ...|+||+-
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~--~~~~i~~~~~-~~~l----~~aDiVIit 73 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFL--ATGTIVRGGD-YADA----ADADIVVIT 73 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhcccc--CCCeEEECCC-HHHh----CCCCEEEEc
Confidence 46889986 544444443333 3579999999887655444333211111 2344443 44 2222 458999998
Q ss_pred CCCCC
Q 019699 183 LADPI 187 (337)
Q Consensus 183 ~~dp~ 187 (337)
...|.
T Consensus 74 ag~p~ 78 (300)
T cd00300 74 AGAPR 78 (300)
T ss_pred CCCCC
Confidence 87554
No 483
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=70.90 E-value=27 Score=31.49 Aligned_cols=78 Identities=8% Similarity=0.115 Sum_probs=45.4
Q ss_pred CCCeEEEEecchhHHHHHHHhcC--CCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHH------HHhh--
Q 019699 102 NPKTIFIMGGGEGSTAREILRHK--TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA------ELES-- 171 (337)
Q Consensus 102 ~p~~VLiIG~G~G~~~~~ll~~~--~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~------~l~~-- 171 (337)
+.++||+.|+ +|++++.++++. ...+|.+++.++.-.+...+.+... ..++.++..|..+ .++.
T Consensus 9 ~~k~vlItGa-~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~ 82 (255)
T PRK07523 9 TGRRALVTGS-SQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQ-----GLSAHALAFDVTDHDAVRAAIDAFE 82 (255)
T ss_pred CCCEEEEECC-cchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhc-----CceEEEEEccCCCHHHHHHHHHHHH
Confidence 4578999986 455555544431 2357999999876554443333211 2456666666532 2221
Q ss_pred -cCCceeEEEEeCCC
Q 019699 172 -RKESYDVIIGDLAD 185 (337)
Q Consensus 172 -~~~~yDvIi~D~~d 185 (337)
.-...|+||..+..
T Consensus 83 ~~~~~~d~li~~ag~ 97 (255)
T PRK07523 83 AEIGPIDILVNNAGM 97 (255)
T ss_pred HhcCCCCEEEECCCC
Confidence 23568999988753
No 484
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=70.86 E-value=44 Score=33.15 Aligned_cols=114 Identities=12% Similarity=0.027 Sum_probs=56.1
Q ss_pred cCCCCCeEEEEec-ch-hHHHHHHHhcCCCc------EEEEE--ECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHH
Q 019699 99 HHPNPKTIFIMGG-GE-GSTAREILRHKTVE------KVVMC--DIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE 168 (337)
Q Consensus 99 ~~~~p~~VLiIG~-G~-G~~~~~ll~~~~~~------~v~~V--Eid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~ 168 (337)
..++|-+|.+||+ |. |......+...+.. .+..+ |++++..+.-..-+......+. .++++..+|..++
T Consensus 40 ~~~~p~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~~~-~~v~i~~~~y~~~ 118 (387)
T TIGR01757 40 SWKKTVNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLYPLL-REVSIGIDPYEVF 118 (387)
T ss_pred cCCCCeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhhhhc-CceEEecCCHHHh
Confidence 4567899999999 75 54444434332222 34445 6666654432222211110121 2455555553332
Q ss_pred HhhcCCceeEEEEeCCCCCCCCCC-cCCc--hHHHHHHH---hccccCCCceEEEe
Q 019699 169 LESRKESYDVIIGDLADPIEGGPC-YKLY--TKSFYEFV---VKPRLNPEGIFVTQ 218 (337)
Q Consensus 169 l~~~~~~yDvIi~D~~dp~~~~p~-~~L~--t~ef~~~~---~~~~L~p~Gvlv~~ 218 (337)
+.-|+||+-+..|...+.. ..|+ +...++.+ +++.-+|+|++++-
T Consensus 119 -----kdaDIVVitAG~prkpg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVV 169 (387)
T TIGR01757 119 -----EDADWALLIGAKPRGPGMERADLLDINGQIFADQGKALNAVASKNCKVLVV 169 (387)
T ss_pred -----CCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEc
Confidence 4589999977665421110 0111 12233331 34444589977654
No 485
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=70.85 E-value=38 Score=32.63 Aligned_cols=98 Identities=12% Similarity=0.082 Sum_probs=56.1
Q ss_pred CCCCeEEEEecch-hHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEc--cHHHHHhh-cCCce
Q 019699 101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVIN--DARAELES-RKESY 176 (337)
Q Consensus 101 ~~p~~VLiIG~G~-G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~--D~~~~l~~-~~~~y 176 (337)
.+..+||+.|+|. |..+..+++..+...|++++.+++-.+.++++ ... .-+..... |..+.+.+ ..+.+
T Consensus 182 ~~g~~vlI~g~g~vG~~a~~~a~~~G~~~v~~~~~~~~~~~~~~~~-g~~------~~v~~~~~~~~~~~~l~~~~~~~~ 254 (365)
T cd05279 182 TPGSTCAVFGLGGVGLSVIMGCKAAGASRIIAVDINKDKFEKAKQL-GAT------ECINPRDQDKPIVEVLTEMTDGGV 254 (365)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHh-CCC------eecccccccchHHHHHHHHhCCCC
Confidence 4468999987642 23345566666666788999888888888653 321 11111112 33333332 23569
Q ss_pred eEEEEeCCCCCCCCCCcCCchHHHHHHHhccccC-CCceEEEe
Q 019699 177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLN-PEGIFVTQ 218 (337)
Q Consensus 177 DvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~-p~Gvlv~~ 218 (337)
|+|+ |... .+ ..+.. ..+.|+ ++|.++.-
T Consensus 255 d~vi-d~~g----~~-------~~~~~-~~~~l~~~~G~~v~~ 284 (365)
T cd05279 255 DYAF-EVIG----SA-------DTLKQ-ALDATRLGGGTSVVV 284 (365)
T ss_pred cEEE-ECCC----CH-------HHHHH-HHHHhccCCCEEEEE
Confidence 9988 5431 11 22333 456788 99988754
No 486
>PRK05867 short chain dehydrogenase; Provisional
Probab=70.73 E-value=29 Score=31.20 Aligned_cols=76 Identities=14% Similarity=0.169 Sum_probs=45.9
Q ss_pred CCCeEEEEecchh---HHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHH------HHhh-
Q 019699 102 NPKTIFIMGGGEG---STAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA------ELES- 171 (337)
Q Consensus 102 ~p~~VLiIG~G~G---~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~------~l~~- 171 (337)
+.+.+|+.|+++| .+++.++++ ..+|.+++.+++-.+...+.+... ..++..+..|..+ ++++
T Consensus 8 ~~k~vlVtGas~gIG~~ia~~l~~~--G~~V~~~~r~~~~~~~~~~~l~~~-----~~~~~~~~~D~~~~~~~~~~~~~~ 80 (253)
T PRK05867 8 HGKRALITGASTGIGKRVALAYVEA--GAQVAIAARHLDALEKLADEIGTS-----GGKVVPVCCDVSQHQQVTSMLDQV 80 (253)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHC--CCEEEEEcCCHHHHHHHHHHHHhc-----CCeEEEEEccCCCHHHHHHHHHHH
Confidence 4578999997544 234444443 357999999887665554443321 2456666666532 2221
Q ss_pred --cCCceeEEEEeCC
Q 019699 172 --RKESYDVIIGDLA 184 (337)
Q Consensus 172 --~~~~yDvIi~D~~ 184 (337)
.-++.|++|..+.
T Consensus 81 ~~~~g~id~lv~~ag 95 (253)
T PRK05867 81 TAELGGIDIAVCNAG 95 (253)
T ss_pred HHHhCCCCEEEECCC
Confidence 2257899998875
No 487
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=70.71 E-value=28 Score=32.97 Aligned_cols=71 Identities=18% Similarity=0.247 Sum_probs=43.2
Q ss_pred CccccccCChhhHHHHHHhHHHhcCCCCCeEEEEecchhHH--HHHHHhcCCCcEEEEEECChHHHHHHHhhhh
Q 019699 76 GKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGST--AREILRHKTVEKVVMCDIDEEVVEFCKSYLV 147 (337)
Q Consensus 76 G~~q~~~~de~~Y~e~l~~~~l~~~~~p~~VLiIG~G~G~~--~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~ 147 (337)
|.+....-|...+-+.|.....-.....++||++|.|+-+- +..++++ +.++|+++--+.+=.+...+.|+
T Consensus 99 g~l~G~NTD~~G~~~~L~~~~~~~~~~~~~vlilGAGGAarAv~~aL~~~-g~~~i~V~NRt~~ra~~La~~~~ 171 (283)
T COG0169 99 GKLRGYNTDGIGFLRALKEFGLPVDVTGKRVLILGAGGAARAVAFALAEA-GAKRITVVNRTRERAEELADLFG 171 (283)
T ss_pred CEEEEEcCCHHHHHHHHHhcCCCcccCCCEEEEECCcHHHHHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHhh
Confidence 66655555655555665532111122468999999986643 3444444 56899999998776655555444
No 488
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=70.67 E-value=28 Score=35.60 Aligned_cols=109 Identities=12% Similarity=0.221 Sum_probs=66.6
Q ss_pred CeEEEEecchhHHHHHHHhcC----CCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHH-HHhhcCCceeE
Q 019699 104 KTIFIMGGGEGSTAREILRHK----TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA-ELESRKESYDV 178 (337)
Q Consensus 104 ~~VLiIG~G~G~~~~~ll~~~----~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~-~l~~~~~~yDv 178 (337)
..|.+.-||+|++..+..++. ....+++-|+.+.+...|+.++-.+.. ..+.+++..+|... +-.....+||+
T Consensus 219 ~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~--~~~t~~~~~~dtl~~~d~~~~~~~D~ 296 (501)
T TIGR00497 219 DDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNI--DYANFNIINADTLTTKEWENENGFEV 296 (501)
T ss_pred CcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCC--CccccCcccCCcCCCccccccccCCE
Confidence 589999999999987655421 235689999999999999998654321 11223333344322 10002356999
Q ss_pred EEEeCCCC--CCCC--CCc---------C----C--chHHHHHHHhccccCCCceE
Q 019699 179 IIGDLADP--IEGG--PCY---------K----L--YTKSFYEFVVKPRLNPEGIF 215 (337)
Q Consensus 179 Ii~D~~dp--~~~~--p~~---------~----L--~t~ef~~~~~~~~L~p~Gvl 215 (337)
|+.+++.. |..+ |+. + + -..-|... +..+|++||..
T Consensus 297 v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h-~~~~L~~gG~~ 351 (501)
T TIGR00497 297 VVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLH-ALYVLGQEGTA 351 (501)
T ss_pred EeecCCcccccccccccccccccchhcccCCCCCchhhHHHHHH-HHHhcCCCCeE
Confidence 99998742 2111 100 0 1 13457777 67899999954
No 489
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=70.66 E-value=1.1e+02 Score=30.20 Aligned_cols=106 Identities=17% Similarity=0.251 Sum_probs=56.5
Q ss_pred eEEEEecc-hhHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhh-hccCCCC----CCCeEEEEc-cHHHHHhhcCCcee
Q 019699 105 TIFIMGGG-EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLV-VNKEAFS----DPRLELVIN-DARAELESRKESYD 177 (337)
Q Consensus 105 ~VLiIG~G-~G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~-~~~~~~~----d~rv~v~~~-D~~~~l~~~~~~yD 177 (337)
+|-+||+| -|.....++.. + -+|+++|+|++.++..++-.. .....++ ..+.++... |..+-+ ..-|
T Consensus 2 kI~VIGlGyvGl~~A~~lA~-G-~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~~----~~ad 75 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIAQ-N-HEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEAY----RDAD 75 (388)
T ss_pred EEEEECCCHHHHHHHHHHHh-C-CcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhhh----cCCC
Confidence 68899999 33322233343 3 679999999999998877432 1100000 012222221 111111 4579
Q ss_pred EEEEeCCCCCCCCCCcCCch----HHHHHHHhccccCCCceEEEeCC
Q 019699 178 VIIGDLADPIEGGPCYKLYT----KSFYEFVVKPRLNPEGIFVTQAG 220 (337)
Q Consensus 178 vIi~D~~dp~~~~p~~~L~t----~ef~~~~~~~~L~p~Gvlv~~~~ 220 (337)
+||+..+.|... . ...+. .+.++. +.+ +++|.+++..+.
T Consensus 76 ~vii~Vpt~~~~-k-~~~~dl~~v~~v~~~-i~~-~~~g~lVV~~ST 118 (388)
T PRK15057 76 YVIIATPTDYDP-K-TNYFNTSSVESVIKD-VVE-INPYAVMVIKST 118 (388)
T ss_pred EEEEeCCCCCcc-C-CCCcChHHHHHHHHH-HHh-cCCCCEEEEeee
Confidence 999999876421 1 11122 334455 455 677777666654
No 490
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=70.63 E-value=20 Score=40.11 Aligned_cols=77 Identities=18% Similarity=0.258 Sum_probs=44.1
Q ss_pred CCCeEEEEecch-hH-HHHHHHhcCCCc------------EEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHH
Q 019699 102 NPKTIFIMGGGE-GS-TAREILRHKTVE------------KVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA 167 (337)
Q Consensus 102 ~p~~VLiIG~G~-G~-~~~~ll~~~~~~------------~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~ 167 (337)
..++||+||+|- |. .++.+++++... .|+++|++++-.+.+.+.++. -.-+.+-+.|..+
T Consensus 568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~------~~~v~lDv~D~e~ 641 (1042)
T PLN02819 568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIEN------AEAVQLDVSDSES 641 (1042)
T ss_pred cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCC------CceEEeecCCHHH
Confidence 367999999983 43 445555543322 489999998766544332210 0113333455544
Q ss_pred HHhhcCCceeEEEEeCCC
Q 019699 168 ELESRKESYDVIIGDLAD 185 (337)
Q Consensus 168 ~l~~~~~~yDvIi~D~~d 185 (337)
..+.. ...|+|++-++.
T Consensus 642 L~~~v-~~~DaVIsalP~ 658 (1042)
T PLN02819 642 LLKYV-SQVDVVISLLPA 658 (1042)
T ss_pred HHHhh-cCCCEEEECCCc
Confidence 43322 349999998874
No 491
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=70.63 E-value=25 Score=33.21 Aligned_cols=76 Identities=14% Similarity=0.258 Sum_probs=40.2
Q ss_pred CCCCeEEEEecchhHHHHHHHh---cCCCcEEEEEECCh----HHHHHHHhhhhhccCCCCCCCeEEEEccHHH--HHhh
Q 019699 101 PNPKTIFIMGGGEGSTAREILR---HKTVEKVVMCDIDE----EVVEFCKSYLVVNKEAFSDPRLELVINDARA--ELES 171 (337)
Q Consensus 101 ~~p~~VLiIG~G~G~~~~~ll~---~~~~~~v~~VEid~----~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~--~l~~ 171 (337)
.+.++||++|+| ++++.++. ..+..+|+++..++ ..-+++++. ... .+.+.+...|..+ -+..
T Consensus 124 ~~~k~vlI~GAG--GagrAia~~La~~G~~~V~I~~R~~~~~~~a~~l~~~l-~~~-----~~~~~~~~~d~~~~~~~~~ 195 (289)
T PRK12548 124 VKGKKLTVIGAG--GAATAIQVQCALDGAKEITIFNIKDDFYERAEQTAEKI-KQE-----VPECIVNVYDLNDTEKLKA 195 (289)
T ss_pred cCCCEEEEECCc--HHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHHHHHHH-hhc-----CCCceeEEechhhhhHHHh
Confidence 356899999996 33333332 23556799999985 333333332 110 1233333334321 1222
Q ss_pred cCCceeEEEEeCC
Q 019699 172 RKESYDVIIGDLA 184 (337)
Q Consensus 172 ~~~~yDvIi~D~~ 184 (337)
.-..+|+||...+
T Consensus 196 ~~~~~DilINaTp 208 (289)
T PRK12548 196 EIASSDILVNATL 208 (289)
T ss_pred hhccCCEEEEeCC
Confidence 2245799998765
No 492
>PLN02602 lactate dehydrogenase
Probab=70.62 E-value=49 Score=32.31 Aligned_cols=109 Identities=15% Similarity=0.253 Sum_probs=57.0
Q ss_pred CeEEEEecch-hHHHHHHHh-cCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEE-ccHHHHHhhcCCceeEEE
Q 019699 104 KTIFIMGGGE-GSTAREILR-HKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI-NDARAELESRKESYDVII 180 (337)
Q Consensus 104 ~~VLiIG~G~-G~~~~~ll~-~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~-~D~~~~l~~~~~~yDvIi 180 (337)
.+|.+||+|. |......+. ..-..++..+|++++..+....-+.... .+.. +.++.. +| .+.+ +.-|+||
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~-~~~~-~~~i~~~~d-y~~~----~daDiVV 110 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAA-AFLP-RTKILASTD-YAVT----AGSDLCI 110 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhh-hcCC-CCEEEeCCC-HHHh----CCCCEEE
Confidence 6999999986 555444443 3334589999999876543333222111 1222 255554 35 2223 4589999
Q ss_pred EeCCCCCCCCCCc-CCc--hHHHHHHHhc--cccCCCceEEEeC
Q 019699 181 GDLADPIEGGPCY-KLY--TKSFYEFVVK--PRLNPEGIFVTQA 219 (337)
Q Consensus 181 ~D~~dp~~~~p~~-~L~--t~ef~~~~~~--~~L~p~Gvlv~~~ 219 (337)
+-+-.|...+... .|+ +.+.++.++. +...|+|++++-+
T Consensus 111 itAG~~~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvt 154 (350)
T PLN02602 111 VTAGARQIPGESRLNLLQRNVALFRKIIPELAKYSPDTILLIVS 154 (350)
T ss_pred ECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 9876554212110 111 2223333111 2257899876543
No 493
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=70.60 E-value=55 Score=32.20 Aligned_cols=108 Identities=13% Similarity=0.135 Sum_probs=58.4
Q ss_pred CCCCeEEEEecch-hHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEE---ccHHHHHhh-c-CC
Q 019699 101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI---NDARAELES-R-KE 174 (337)
Q Consensus 101 ~~p~~VLiIG~G~-G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~---~D~~~~l~~-~-~~ 174 (337)
....+||+.|+|. |..+..+++..+...|.++|.+++-.+.++++ +.. .+.. .+..+.+.+ . ..
T Consensus 184 ~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~~-Ga~---------~v~~~~~~~~~~~v~~~~~~~ 253 (393)
T TIGR02819 184 GPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARSF-GCE---------TVDLSKDATLPEQIEQILGEP 253 (393)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHc-CCe---------EEecCCcccHHHHHHHHcCCC
Confidence 4567899976653 33345566766666677789999889999874 211 1111 123333332 2 24
Q ss_pred ceeEEEEeCCCCCCCCCCc--CCchHHHHHHHhccccCCCceEEEeC
Q 019699 175 SYDVIIGDLADPIEGGPCY--KLYTKSFYEFVVKPRLNPEGIFVTQA 219 (337)
Q Consensus 175 ~yDvIi~D~~dp~~~~p~~--~L~t~ef~~~~~~~~L~p~Gvlv~~~ 219 (337)
.+|+||--...+..+.+.. .--...-++. +-+.++++|.+++-.
T Consensus 254 g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~G~i~~~G 299 (393)
T TIGR02819 254 EVDCAVDCVGFEARGHGHDGKKEAPATVLNS-LMEVTRVGGAIGIPG 299 (393)
T ss_pred CCcEEEECCCCccccccccccccchHHHHHH-HHHHhhCCCEEEEee
Confidence 6998875433221000000 0000123444 457899999987643
No 494
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=70.41 E-value=41 Score=30.23 Aligned_cols=77 Identities=14% Similarity=0.188 Sum_probs=45.1
Q ss_pred CCCeEEEEecchhHHHHHHHhcC--CCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHH------HHHhh--
Q 019699 102 NPKTIFIMGGGEGSTAREILRHK--TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDAR------AELES-- 171 (337)
Q Consensus 102 ~p~~VLiIG~G~G~~~~~ll~~~--~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~------~~l~~-- 171 (337)
+.+++|+.|++ |++++.++++. ...+|++++.+++..+...+.+... ..++.++..|.. ..++.
T Consensus 10 ~~k~ilItGas-~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~-----~~~~~~~~~Dl~~~~~~~~~~~~~~ 83 (256)
T PRK06124 10 AGQVALVTGSA-RGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAA-----GGAAEALAFDIADEEAVAAAFARID 83 (256)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhc-----CCceEEEEccCCCHHHHHHHHHHHH
Confidence 46788888875 44444433321 1368999999987655444433221 245777776643 22222
Q ss_pred -cCCceeEEEEeCC
Q 019699 172 -RKESYDVIIGDLA 184 (337)
Q Consensus 172 -~~~~yDvIi~D~~ 184 (337)
.-++.|+||..+.
T Consensus 84 ~~~~~id~vi~~ag 97 (256)
T PRK06124 84 AEHGRLDILVNNVG 97 (256)
T ss_pred HhcCCCCEEEECCC
Confidence 2256899998875
No 495
>PRK08163 salicylate hydroxylase; Provisional
Probab=70.05 E-value=5.3 Score=38.87 Aligned_cols=36 Identities=25% Similarity=0.373 Sum_probs=26.1
Q ss_pred CCCeEEEEecchhHHHHHHHhcCCCcEEEEEECChH
Q 019699 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEE 137 (337)
Q Consensus 102 ~p~~VLiIG~G~G~~~~~ll~~~~~~~v~~VEid~~ 137 (337)
.+.+|+|||+|-++++..++-.....+|+++|-++.
T Consensus 3 ~~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~ 38 (396)
T PRK08163 3 KVTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAE 38 (396)
T ss_pred CCCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcc
Confidence 357899999998887655443333468999997754
No 496
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=69.94 E-value=40 Score=31.57 Aligned_cols=95 Identities=18% Similarity=0.241 Sum_probs=55.3
Q ss_pred CCCCeEEEEecch-hHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHH---HhhcCCce
Q 019699 101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE---LESRKESY 176 (337)
Q Consensus 101 ~~p~~VLiIG~G~-G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~---l~~~~~~y 176 (337)
....+||++|+|. |..+..+++..+...|.+++-+++-.+.++++- .. .++..+...+ .....+.+
T Consensus 158 ~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g-~~---------~~~~~~~~~~~~~~~~~~~~v 227 (334)
T cd08234 158 KPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKLG-AT---------ETVDPSREDPEAQKEDNPYGF 227 (334)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhC-Ce---------EEecCCCCCHHHHHHhcCCCC
Confidence 3567999997653 445566667665445889999998888876542 10 1111111111 11123569
Q ss_pred eEEEEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEEEe
Q 019699 177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (337)
Q Consensus 177 DvIi~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv~~ 218 (337)
|+|+.-... ...... +.+.|+++|.++.-
T Consensus 228 d~v~~~~~~------------~~~~~~-~~~~l~~~G~~v~~ 256 (334)
T cd08234 228 DVVIEATGV------------PKTLEQ-AIEYARRGGTVLVF 256 (334)
T ss_pred cEEEECCCC------------hHHHHH-HHHHHhcCCEEEEE
Confidence 999843211 123344 46789999988754
No 497
>KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only]
Probab=69.69 E-value=12 Score=36.45 Aligned_cols=76 Identities=17% Similarity=0.313 Sum_probs=48.1
Q ss_pred CCCCeEEEEecchh--HHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHHHHhhc-CCcee
Q 019699 101 PNPKTIFIMGGGEG--STAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR-KESYD 177 (337)
Q Consensus 101 ~~p~~VLiIG~G~G--~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~~l~~~-~~~yD 177 (337)
...++||++|+++| ..+..++++.. ...+..--+.+-++++++.-. |.-+.....|..+-+++. .+.||
T Consensus 156 ~~g~~vLv~ggsggVG~~aiQlAk~~~-~~~v~t~~s~e~~~l~k~lGA-------d~vvdy~~~~~~e~~kk~~~~~~D 227 (347)
T KOG1198|consen 156 SKGKSVLVLGGSGGVGTAAIQLAKHAG-AIKVVTACSKEKLELVKKLGA-------DEVVDYKDENVVELIKKYTGKGVD 227 (347)
T ss_pred CCCCeEEEEeCCcHHHHHHHHHHHhcC-CcEEEEEcccchHHHHHHcCC-------cEeecCCCHHHHHHHHhhcCCCcc
Confidence 45679999998765 56788888876 456666678888898888632 111222223444444332 46799
Q ss_pred EEEEeCC
Q 019699 178 VIIGDLA 184 (337)
Q Consensus 178 vIi~D~~ 184 (337)
+|+=-..
T Consensus 228 vVlD~vg 234 (347)
T KOG1198|consen 228 VVLDCVG 234 (347)
T ss_pred EEEECCC
Confidence 9985444
No 498
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=69.47 E-value=76 Score=29.83 Aligned_cols=95 Identities=19% Similarity=0.196 Sum_probs=55.4
Q ss_pred eEEEEecch--hHHHHHHHhcCCCcEEEEEECChHHHHHHHhhhhhc---cCCCCCCCeEEEEccHHHHHhhcCCceeEE
Q 019699 105 TIFIMGGGE--GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVN---KEAFSDPRLELVINDARAELESRKESYDVI 179 (337)
Q Consensus 105 ~VLiIG~G~--G~~~~~ll~~~~~~~v~~VEid~~vi~~a~~~f~~~---~~~~~d~rv~v~~~D~~~~l~~~~~~yDvI 179 (337)
+|.+||+|. +.++..+++. ..+|++++.+++.++..++..... ......++++. ..|..+.+ +..|+|
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~--g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~----~~~D~v 75 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARN--GHDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRA-TTDLAEAL----ADADLI 75 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhC--CCEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEE-eCCHHHHH----hCCCEE
Confidence 799999983 3445555543 347999999998887666542110 00000112332 33433333 357999
Q ss_pred EEeCCCCCCCCCCcCCchHHHHHHHhccccCCCceEE
Q 019699 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFV 216 (337)
Q Consensus 180 i~D~~dp~~~~p~~~L~t~ef~~~~~~~~L~p~Gvlv 216 (337)
|+-.++. ...+.++. +...++++.+++
T Consensus 76 i~~v~~~---------~~~~v~~~-l~~~~~~~~~vi 102 (325)
T PRK00094 76 LVAVPSQ---------ALREVLKQ-LKPLLPPDAPIV 102 (325)
T ss_pred EEeCCHH---------HHHHHHHH-HHhhcCCCCEEE
Confidence 9987632 23566666 677788877654
No 499
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=69.43 E-value=4.8 Score=38.99 Aligned_cols=47 Identities=19% Similarity=0.300 Sum_probs=32.0
Q ss_pred hhHHHHHHhHHHhcCCCCCeEEEEecchhHHHH--HHHhcCCCcEEEEEECCh
Q 019699 86 FIYHESLVHPALLHHPNPKTIFIMGGGEGSTAR--EILRHKTVEKVVMCDIDE 136 (337)
Q Consensus 86 ~~Y~e~l~~~~l~~~~~p~~VLiIG~G~G~~~~--~ll~~~~~~~v~~VEid~ 136 (337)
+.|+.++++. .++--+||++|||+|+++. .+.+..+..+|-.||-.+
T Consensus 26 ~~~~t~~~~~----~~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e 74 (446)
T KOG3851|consen 26 FQLATMLARF----ARKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAE 74 (446)
T ss_pred Eeehhhhhhh----cccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchh
Confidence 4566665542 2455689999999998753 444555677888887654
No 500
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=69.39 E-value=44 Score=29.68 Aligned_cols=75 Identities=15% Similarity=0.192 Sum_probs=43.8
Q ss_pred CCCeEEEEecchhHHHHH----HHhcCCCcEEEEEECChHHHHHHHhhhhhccCCCCCCCeEEEEccHHH------HHhh
Q 019699 102 NPKTIFIMGGGEGSTARE----ILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA------ELES 171 (337)
Q Consensus 102 ~p~~VLiIG~G~G~~~~~----ll~~~~~~~v~~VEid~~vi~~a~~~f~~~~~~~~d~rv~v~~~D~~~------~l~~ 171 (337)
..+++|++|++ |+++.. ++++ ..+|++++.++.-.+.+.+.+... ..++.++..|..+ .++.
T Consensus 4 ~~~~~lItG~~-g~iG~~~a~~l~~~--G~~vi~~~r~~~~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~ 75 (253)
T PRK08217 4 KDKVIVITGGA-QGLGRAMAEYLAQK--GAKLALIDLNQEKLEEAVAECGAL-----GTEVRGYAANVTDEEDVEATFAQ 75 (253)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHhc-----CCceEEEEcCCCCHHHHHHHHHH
Confidence 35688988863 334333 3333 357999999987655444433211 3567777777432 1222
Q ss_pred ---cCCceeEEEEeCC
Q 019699 172 ---RKESYDVIIGDLA 184 (337)
Q Consensus 172 ---~~~~yDvIi~D~~ 184 (337)
.-.+.|+||..+.
T Consensus 76 ~~~~~~~id~vi~~ag 91 (253)
T PRK08217 76 IAEDFGQLNGLINNAG 91 (253)
T ss_pred HHHHcCCCCEEEECCC
Confidence 1246899998764
Done!