Query 019700
Match_columns 337
No_of_seqs 260 out of 1842
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 03:51:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019700.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019700hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02164 sulfotransferase 100.0 2.8E-79 6.1E-84 577.9 31.4 308 25-337 31-343 (346)
2 KOG1584 Sulfotransferase [Gene 100.0 7.7E-79 1.7E-83 552.1 24.6 285 37-337 3-294 (297)
3 PF00685 Sulfotransfer_1: Sulf 100.0 4.6E-39 1E-43 294.1 12.3 249 72-334 1-267 (267)
4 PF13469 Sulfotransfer_3: Sulf 98.9 3E-09 6.5E-14 92.5 7.2 24 236-261 191-214 (215)
5 KOG3988 Protein-tyrosine sulfo 98.7 9E-09 2E-13 92.8 4.4 145 162-335 176-327 (378)
6 KOG3704 Heparan sulfate D-gluc 97.9 8.8E-06 1.9E-10 73.4 3.6 154 153-328 180-344 (360)
7 PF09037 Sulphotransf: Stf0 su 97.1 0.00061 1.3E-08 62.2 4.5 90 164-261 114-219 (245)
8 KOG3703 Heparan sulfate N-deac 97.0 0.0073 1.6E-07 59.9 11.2 95 162-258 686-790 (873)
9 PF06990 Gal-3-0_sulfotr: Gala 93.8 0.16 3.5E-06 49.7 6.8 110 67-187 62-172 (402)
10 KOG3922 Sulfotransferases [Pos 93.6 0.063 1.4E-06 49.7 3.3 98 74-186 80-183 (361)
11 PF03567 Sulfotransfer_2: Sulf 92.8 0.095 2.1E-06 46.8 3.2 26 72-97 8-33 (253)
12 PF09037 Sulphotransf: Stf0 su 82.3 0.97 2.1E-05 41.2 2.4 21 76-96 3-23 (245)
13 COG4424 Uncharacterized protei 69.6 4 8.7E-05 36.0 2.6 51 231-283 188-238 (250)
14 COG4424 Uncharacterized protei 57.3 14 0.0003 32.7 3.7 26 74-99 7-32 (250)
15 KOG4651 Chondroitin 6-sulfotra 49.5 6.9 0.00015 37.2 0.6 34 69-102 78-111 (324)
16 KOG4157 beta-1,6-N-acetylgluco 42.4 25 0.00053 34.7 3.2 203 67-325 199-405 (418)
17 cd00808 GluRS_core catalytic c 38.2 43 0.00092 30.4 3.9 53 207-261 12-69 (239)
18 PF07498 Rho_N: Rho terminatio 36.1 40 0.00087 21.7 2.5 37 239-275 1-37 (43)
19 PF07582 AP_endonuc_2_N: AP en 32.5 1.1E+02 0.0025 21.0 4.4 29 230-258 15-43 (55)
20 COG1158 Rho Transcription term 30.1 46 0.001 32.0 2.8 28 71-98 172-200 (422)
21 PF01498 HTH_Tnp_Tc3_2: Transp 26.5 1.4E+02 0.003 21.1 4.3 62 239-330 7-71 (72)
22 PF03484 B5: tRNA synthetase B 26.0 73 0.0016 22.7 2.7 28 248-280 8-35 (70)
23 PF03205 MobB: Molybdopterin g 22.5 1E+02 0.0022 25.3 3.3 25 75-99 3-28 (140)
24 cd01038 Endonuclease_DUF559 Do 22.4 1.1E+02 0.0024 23.7 3.4 26 230-255 82-107 (108)
25 smart00874 B5 tRNA synthetase 22.3 1.1E+02 0.0023 21.6 3.0 27 248-279 8-34 (71)
26 PRK14489 putative bifunctional 21.8 86 0.0019 30.2 3.1 28 72-99 205-233 (366)
27 PF13671 AAA_33: AAA domain; P 21.5 73 0.0016 25.4 2.2 19 75-93 2-21 (143)
28 PRK06851 hypothetical protein; 21.0 2.4E+02 0.0053 27.3 6.0 80 17-99 159-242 (367)
29 TIGR03715 KxYKxGKxW KxYKxGKxW 20.6 82 0.0018 18.4 1.7 15 81-95 7-21 (29)
30 cd00418 GlxRS_core catalytic c 20.5 1.6E+02 0.0034 26.6 4.3 53 207-261 12-69 (230)
31 COG4088 Predicted nucleotide k 20.5 1.1E+02 0.0023 27.6 3.1 25 75-99 4-29 (261)
32 PF02969 TAF: TATA box binding 20.5 1E+02 0.0023 22.0 2.5 30 244-278 5-35 (66)
33 PRK09767 hypothetical protein; 20.3 1.4E+02 0.0029 24.0 3.5 30 230-259 85-114 (117)
No 1
>PLN02164 sulfotransferase
Probab=100.00 E-value=2.8e-79 Score=577.88 Aligned_cols=308 Identities=49% Similarity=0.921 Sum_probs=268.9
Q ss_pred HHHHHHHhcCCCCCCCcccc-ceeeCcEEecccchHhHHHhhhccccCCCCEEEEcCCCCcchHHHHHHHHHHhccCCCC
Q 019700 25 QECRELISSLPAETGWVVDH-LYQYQGFWHTSRELQGVLACQKHFQAQDSDILLVTTPKAGTTWLKAITFAIVNRLRYVD 103 (337)
Q Consensus 25 ~~~~~~~~~~p~~~~~~~~~-~~~~~g~~~p~~~~~~~~~~~~~f~~r~~DV~ivsyPKSGTTW~~~il~~i~~~~~~~~ 103 (337)
.|+++++++||.+++|.... ++.|+|+|+|..++++++.++.+|++|++||||||||||||||||+|+++|+++++++.
T Consensus 31 ~~~~~~~~~lp~~~~~~~~~~~~~y~G~w~~~~~~~~~~~~~~~f~~r~~DV~laSyPKsGTTWlq~iv~~i~~~~~~~~ 110 (346)
T PLN02164 31 KRYQDLIATLPHKKGWRPKEPLIEYGGHWWLQPLLEGLLHAQEFFQARPNDFLVCSYPKTGTTWLKALTFAIANRSRFDD 110 (346)
T ss_pred HHHHHHHhhCCCCcCCCCCCCeEEECCEEechhhhHHHHHHHHcCCCCCCCEEEEcCCCchhHHHHHHHHHHHcCCCccc
Confidence 48999999999999998665 88999999999878999999999999999999999999999999999999999887754
Q ss_pred CCCCCCCCCCCCCCccceeEeecccCCCccccccCCCCceEeeccccccCCCcccCCCCCceEEEEecCccceeehhHHh
Q 019700 104 NPCNHPLLTNNPHELVPFIELKLYVDNQVPDLTTLTSPRLFATHLPFVSLPASVKDSSSACKLVYLCRNPKDIFVSLWHF 183 (337)
Q Consensus 104 ~~~~~~l~~~~~~~~~P~lE~~~~~~~~~~~~~~~~~pr~iktHlp~~~lp~~l~~~~~~~K~I~i~RdPrDv~vS~y~~ 183 (337)
. .+++...+|+.++||||.........+.++. ++||+||||+|++++|+++++++ +|+|||+|||+|++||+|||
T Consensus 111 ~--~~pl~~~~p~~~vP~lE~~~~~~~~~~~l~~-~~PRlikTHlp~~~lP~~i~~~~--~KiIyv~RnPkDv~VS~yhf 185 (346)
T PLN02164 111 S--SNPLLKRNPHEFVPYIEIDFPFFPSVDVLKD-KGNTLFSTHIPYGLLPDSVVKSG--CKMVYIWRDPKDTFISMWTF 185 (346)
T ss_pred c--cCcccccCccccCCceecccCCCCchhhhcc-CCCCeeEecCChhhCccccccCC--ceEEEEecCchhheeeHHHH
Confidence 2 4677777889999999986542223344443 68999999999999999998888 99999999999999999999
Q ss_pred hhccCCCCCCCCCHHHHHHHHhccccccCChHHHHHHHHHHhccCCCeEEEEechhhhcChHHHHHHHHHHhCCCCChhh
Q 019700 184 TNKLRPEEKGTNSLEETFDKFCRGVSLYGPFWDHILGYWKASMEKPDRVFFLKYEELKEQPSLRLKMLAEFLGCPFSPAE 263 (337)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~f~~g~~~~g~~~~hv~~~w~~~~~~~~~vl~l~YEDL~~d~~~~v~~I~~FLg~~~~~~~ 263 (337)
...........++|+++++.|++|...+|+||+|+++||++..+.++|||+|+||||++||.++|++||+|||+++++++
T Consensus 186 ~~~~~~~~~~~~s~ee~~e~f~~g~~~~G~y~dHv~~yw~~~~~~p~~VLfl~YEDmk~D~~~~v~ria~FLG~~~s~ee 265 (346)
T PLN02164 186 LHKERSQQGPLNSLEESFDMFCRGLSVYGPYLDHVLGYWKAYQENPDRILFLKYETMRADPLPYVKRLAEFMGYGFTAEE 265 (346)
T ss_pred HhhccccCCCCCCHHHHHHHHHcCCCCCCcHHHHHHHHHHHhhcCCccEEEEEHHHHHHhHHHHHHHHHHHhCCCCchhh
Confidence 87655432234689999999999999999999999999998644567999999999999999999999999999999886
Q ss_pred hhchHHHHHHHhcChHHHHhHHhhcCCCCCCC----CCCCceeeccccCCcccCCcHHHHHHHHHHHHHHcCCCCCCC
Q 019700 264 EANGLVDDILKLCSFDNLSNLEVNRNGKMSSG----EGYNAFFRRGVVGDWMNYLTPEMVGRLDQIIEQKLHGFGLKF 337 (337)
Q Consensus 264 ~~~~~l~~iv~~~sf~~mk~~~~n~~~~~~~~----~~~~~f~RkG~vGdWk~~ft~eq~~~~~~~~~e~l~~~gl~f 337 (337)
++++++++|+++|||++||++++|+.+..... ...+.|||||+||||||+||+||+++|+++++++|+|+||.|
T Consensus 266 ~~~~~v~~ive~~SFe~Mk~~e~n~~~~~~~~~~~~~~~~~FfRKG~vGdWkn~lt~e~~~r~d~~~~ekl~gsgl~~ 343 (346)
T PLN02164 266 EEKGVVEKVVKLCSFETLKNLEANKGEKDREDRPAVYANSAYFRKGKVGDWQNYLTPEMAARIDGLMEEKFKGTGLLE 343 (346)
T ss_pred cchHHHHHHHHHCCHHHHhhhHhhccccccccccccccCcceeeccCCCCCcccCCHHHHHHHHHHHHHHhcCCCCcc
Confidence 67778999999999999999887765431111 244579999999999999999999999999999999999987
No 2
>KOG1584 consensus Sulfotransferase [General function prediction only]
Probab=100.00 E-value=7.7e-79 Score=552.09 Aligned_cols=285 Identities=51% Similarity=0.936 Sum_probs=246.8
Q ss_pred CCCCcc-ccceeeCcEEecccchHhHHHhhhccccCCCCEEEEcCCCCcchHHHHHHHHHHhccCCCCCCCCCCCCCCCC
Q 019700 37 ETGWVV-DHLYQYQGFWHTSRELQGVLACQKHFQAQDSDILLVTTPKAGTTWLKAITFAIVNRLRYVDNPCNHPLLTNNP 115 (337)
Q Consensus 37 ~~~~~~-~~~~~~~g~~~p~~~~~~~~~~~~~f~~r~~DV~ivsyPKSGTTW~~~il~~i~~~~~~~~~~~~~~l~~~~~ 115 (337)
..++.. ..++.|+|++++..+.+.+....++|++|||||+||||||||||||++|+++|+++++++.++ .+||...+|
T Consensus 3 ~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~Fq~r~dDiiiaTyPKsGTTWlkel~~~i~~~~d~~~~~-~~pL~~~~P 81 (297)
T KOG1584|consen 3 EKGSRGRFKLVEYQGCWYPPKFLQALLRVQKHFQARPDDVIIATYPKSGTTWLQELTFLILNRGDFEKAK-RHPLLERNP 81 (297)
T ss_pred ccCcCCCcCeEEECCEEecHHHHHHHHHHHhcCCCCCCCEEEEecCCCchHHHHHHHHHHHcCCCccccc-CCchhhcCC
Confidence 344444 578889999999999999988888899999999999999999999999999999999887654 478887788
Q ss_pred CCccceeEeecccCCCccccccCCCCceEeeccccccCCCcccCCCCCceEEEEecCccceeehhHHhhhccCCCCCCCC
Q 019700 116 HELVPFIELKLYVDNQVPDLTTLTSPRLFATHLPFVSLPASVKDSSSACKLVYLCRNPKDIFVSLWHFTNKLRPEEKGTN 195 (337)
Q Consensus 116 ~~~~P~lE~~~~~~~~~~~~~~~~~pr~iktHlp~~~lp~~l~~~~~~~K~I~i~RdPrDv~vS~y~~~~~~~~~~~~~~ 195 (337)
+..+|++|.... +...+..++|||+++||+|+.+||.++++++ ||+||++|||||++||+|||.++.... ..++
T Consensus 82 ~~e~p~~e~~~~---~~~~~~~l~SPRl~kTHlP~~lLp~s~~~~~--cKvVYv~RNpKD~~VSy~hf~~~~~~~-~~~~ 155 (297)
T KOG1584|consen 82 HLEVPFLELQLY---GNDSAPDLPSPRLFKTHLPFQLLPESLKESK--CKVVYVCRNPKDVLVSYYHFNRMLKTQ-PGPG 155 (297)
T ss_pred ceeecccccccc---cccccccCCCCcceeccCChhhcchhhhcCC--CcEEEEecCccceeeeHHHHHhhhccC-CCCC
Confidence 887887776544 3455666789999999999999999999999 999999999999999999999987764 3556
Q ss_pred CHHHHHHHHhccccccCChHHHHHHHHHHhccCCCeEEEEechhhhcChHHHHHHHHHHhCCCCChhhhhchHHHHHHHh
Q 019700 196 SLEETFDKFCRGVSLYGPFWDHILGYWKASMEKPDRVFFLKYEELKEQPSLRLKMLAEFLGCPFSPAEEANGLVDDILKL 275 (337)
Q Consensus 196 ~~~~~~~~f~~g~~~~g~~~~hv~~~w~~~~~~~~~vl~l~YEDL~~d~~~~v~~I~~FLg~~~~~~~~~~~~l~~iv~~ 275 (337)
+|++|++.||+|.+.||+||+||++||+. ++++||||++||||++||..+|+|||+|||+++++++ +++++.+
T Consensus 156 ~~e~~fe~F~~G~~~~Gp~~dHVl~~W~~--~~~~~VLFl~YEdmk~dp~~~ikrlaeFLg~~~~~Ee-----~~~~~~~ 228 (297)
T KOG1584|consen 156 TFEEFFESFCNGVVPYGPWWDHVLGYWEL--EDPKNVLFLKYEDMKADPKGEIKKLAEFLGCPFTKEE-----EDKGVVH 228 (297)
T ss_pred cHHHHHHHHhCCcCCcCChHHHHHHHHHh--cCCCceEEEEHHHhhhCHHHHHHHHHHHhCCCCCHHH-----HhhhhHH
Confidence 79999999999999999999999999995 4678999999999999999999999999999999998 7777777
Q ss_pred cChHHHHhH-----HhhcCCCCCCCCCCCceeeccccCCcccCCcHHHHHHHHHHHHHHcCC-CCCCC
Q 019700 276 CSFDNLSNL-----EVNRNGKMSSGEGYNAFFRRGVVGDWMNYLTPEMVGRLDQIIEQKLHG-FGLKF 337 (337)
Q Consensus 276 ~sf~~mk~~-----~~n~~~~~~~~~~~~~f~RkG~vGdWk~~ft~eq~~~~~~~~~e~l~~-~gl~f 337 (337)
.+|+.|+.+ ++|..+.. ....+.|||||.|||||||||++|+++||++++++|+| +||+|
T Consensus 229 ~~~~~~~~n~l~nle~n~~~~~--~~~~~~F~RKG~vGDWKn~~T~~~~ekfD~~~eekm~g~sgL~F 294 (297)
T KOG1584|consen 229 LSFELCSLNPLSNLEVNKTEKL--LHKISPFFRKGEVGDWKNYLTPEMNEKFDKIYEEKMEGCSGLKF 294 (297)
T ss_pred HHHHHHhhccccCceecccccc--cccchhhhcCCCcccccccCCHHHHHHHHHHHHHHhcCCCCccc
Confidence 777777652 33333321 22337899999999999999999999999999999999 88987
No 3
>PF00685 Sulfotransfer_1: Sulfotransferase domain; InterPro: IPR000863 This family includes a range of sulphotransferase proteins including flavonyl 3-sulphotransferase, aryl sulphotransferase, alcohol sulphotransferase, oestrogen sulphotransferase and phenol-sulphating phenol sulphotransferase. These enzymes are responsible for the transfer of sulphate groups to specific compounds.; GO: 0008146 sulfotransferase activity; PDB: 3MGC_A 3MGB_A 3MG9_A 1G3M_B 1HY3_B 2QP4_A 3F3Y_C 1EFH_A 1OV4_A 1J99_A ....
Probab=100.00 E-value=4.6e-39 Score=294.07 Aligned_cols=249 Identities=32% Similarity=0.612 Sum_probs=180.3
Q ss_pred CCCEEEEcCCCCcchHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCccceeEee--------c---------ccCCCccc
Q 019700 72 DSDILLVTTPKAGTTWLKAITFAIVNRLRYVDNPCNHPLLTNNPHELVPFIELK--------L---------YVDNQVPD 134 (337)
Q Consensus 72 ~~DV~ivsyPKSGTTW~~~il~~i~~~~~~~~~~~~~~l~~~~~~~~~P~lE~~--------~---------~~~~~~~~ 134 (337)
|.+|||+|+||||||||++||............ ..+..... ....|+++.. . ........
T Consensus 1 ~~~i~I~g~prSGTt~l~~lL~~h~~~~~~~~~--~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (267)
T PF00685_consen 1 PPPIFIVGAPRSGTTWLRELLNSHPDIFSFSPF--KEPHFFNN-RDYSPFLEWYRDFFPFRIKPQEHIPSFSHVESKIVR 77 (267)
T ss_dssp TTSEEEEESTTSSHHHHHHHHHHHHTTTETHHH--TSSHHTTT-HHHSTBTTHHHHTSHEEGTTTEEEGGCTTTETHHHH
T ss_pred CCCEEEECCCCCcHHHHHHHHHhCccccccccc--ccccccch-hhhhhhhhhhhcccccccccccccccccccchhHHH
Confidence 579999999999999999999997643332100 00000001 2233444321 0 00011223
Q ss_pred cccCCCCceEeeccccccCCCcccCCCCCceEEEEecCccceeehhHHhhhccCCCCCCCC-CHHHHHHHHhccccccCC
Q 019700 135 LTTLTSPRLFATHLPFVSLPASVKDSSSACKLVYLCRNPKDIFVSLWHFTNKLRPEEKGTN-SLEETFDKFCRGVSLYGP 213 (337)
Q Consensus 135 ~~~~~~pr~iktHlp~~~lp~~l~~~~~~~K~I~i~RdPrDv~vS~y~~~~~~~~~~~~~~-~~~~~~~~f~~g~~~~g~ 213 (337)
+...+.+++++||+++..++..+..++ +|+|+|+|||+|+++|.|++........ ..+ .++++++.++.....++.
T Consensus 78 ~~~~~~~~~~~~H~~~~~~~~~~~~~~--~KiI~ivRdP~d~~~S~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 154 (267)
T PF00685_consen 78 LRDLPSPRFIKTHLPLDLLPKKLLFPN--AKIIYIVRDPRDVIVSRYKHSWRSNPFS-DPGQRFEEFVDWFLQPRLLYGS 154 (267)
T ss_dssp HHCSCSSEEEEE-S-GGGSHHHHHHTT--EEEEEEE--HHHHHHHHHHHHHHBTTST-THHSHHHHHHHHHHTTHSTTSC
T ss_pred HhhccCchhhhhccccccccccccccc--cccceecccccchhHHHHHHHHhccccc-ccchhhhhhhhhhhcccccccc
Confidence 455678999999999988765544456 9999999999999999999997665321 122 378888888877788899
Q ss_pred hHHHHHHHHHHhccCCCeEEEEechhhhcChHHHHHHHHHHhCCCCChhhhhchHHHHHHHhcChHHHHhHHhhcCCCCC
Q 019700 214 FWDHILGYWKASMEKPDRVFFLKYEELKEQPSLRLKMLAEFLGCPFSPAEEANGLVDDILKLCSFDNLSNLEVNRNGKMS 293 (337)
Q Consensus 214 ~~~hv~~~w~~~~~~~~~vl~l~YEDL~~d~~~~v~~I~~FLg~~~~~~~~~~~~l~~iv~~~sf~~mk~~~~n~~~~~~ 293 (337)
|++++..||... ..+++++|+||||+.||.+++++|++|||++++++. ++.++++++|++|+..........
T Consensus 155 ~~~~~~~~~~~~--~~~~~~~i~YEdl~~dp~~~l~~I~~FLgl~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~- 226 (267)
T PF00685_consen 155 WADHLKSWLSSF--DRDNVLIIRYEDLVADPEKELKRICDFLGLPFSDEP-----LDKIVEKSSFDNMRSKEARNKSKL- 226 (267)
T ss_dssp HHHHHHHHHHHT--TTSTEEEEEHHHHHHSHHHHHHHHHHHTTSS--HHH-----HHHHHHHTSHHHHHHETTTSSTTS-
T ss_pred ccccccchhhhh--ccchhhhhcchhhhhhhhHHHHHHHHHHhhccchhh-----hHHHHHhhhhhhhccccccccccc-
Confidence 999999999853 557999999999999999999999999999999988 999999999999997533221100
Q ss_pred CCCCCCceeeccccCCcccCCcHHHHHHHHHHHHHHcCCCC
Q 019700 294 SGEGYNAFFRRGVVGDWMNYLTPEMVGRLDQIIEQKLHGFG 334 (337)
Q Consensus 294 ~~~~~~~f~RkG~vGdWk~~ft~eq~~~~~~~~~e~l~~~g 334 (337)
.......++|+|.+|+||++||+++++.|+++|++.|+.+|
T Consensus 227 ~~~~~~~~~~~~~~~~W~~~l~~e~~~~i~~~~~~~m~~~~ 267 (267)
T PF00685_consen 227 SDGSSSRFFRKGKSGRWKNELSPEQIDRIERICGDAMRELG 267 (267)
T ss_dssp CTTTTSTSSEET-STGGGGTSBHHHHHHHHHHHHHHHTTSS
T ss_pred ccCCcceeeeecccCcccccCCHHHHHHHHHHHHHHHccCC
Confidence 00134678999999999999999999999999999999987
No 4
>PF13469 Sulfotransfer_3: Sulfotransferase family; PDB: 3AP1_B 3AP3_B 3AP2_B 3RNL_A 2Z6V_A 2ZQ5_A.
Probab=98.90 E-value=3e-09 Score=92.49 Aligned_cols=24 Identities=25% Similarity=0.546 Sum_probs=18.6
Q ss_pred echhhhcChHHHHHHHHHHhCCCCCh
Q 019700 236 KYEELKEQPSLRLKMLAEFLGCPFSP 261 (337)
Q Consensus 236 ~YEDL~~d~~~~v~~I~~FLg~~~~~ 261 (337)
+||||.+||.+++++|++ + +++++
T Consensus 191 ~yedl~~~p~~~l~~i~~-~-~~l~~ 214 (215)
T PF13469_consen 191 RYEDLVADPEATLRRICA-L-LELTR 214 (215)
T ss_dssp EHHHHHHSHHHHHHHHHH-C-----H
T ss_pred CHHHHHHCHHHHHHHHHH-h-hCCcC
Confidence 779999999999999999 7 77754
No 5
>KOG3988 consensus Protein-tyrosine sulfotransferase TPST1/TPST2 [Posttranslational modification, protein turnover, chaperones]
Probab=98.73 E-value=9e-09 Score=92.81 Aligned_cols=145 Identities=16% Similarity=0.290 Sum_probs=83.0
Q ss_pred CCceEEEEecCccceeehhHHhhhccCCCCCCCCCHHHHHHHHhccccccCChHHHHHHHHHHh-c-cCCCeEEEEechh
Q 019700 162 SACKLVYLCRNPKDIFVSLWHFTNKLRPEEKGTNSLEETFDKFCRGVSLYGPFWDHILGYWKAS-M-EKPDRVFFLKYEE 239 (337)
Q Consensus 162 ~~~K~I~i~RdPrDv~vS~y~~~~~~~~~~~~~~~~~~~~~~f~~g~~~~g~~~~hv~~~w~~~-~-~~~~~vl~l~YED 239 (337)
|++|+++++||.|.++-|..-.--...+ . +.++|.+-+. -|++..+--... . -..++++.|.||.
T Consensus 176 PNAKfllMvRDgRAtVhSmIsRKVtIaG--f---dlssyr~c~t--------kWN~aie~M~~QC~~vg~~~Cl~VyYEq 242 (378)
T KOG3988|consen 176 PNAKFLLMVRDGRATVHSMISRKVTIAG--F---DLSSYRQCMT--------KWNQAIEVMYFQCMEVGKKKCLKVYYEQ 242 (378)
T ss_pred CCceEEEEEecchHHHHHHHhccceecc--c---cchHHHHHHH--------HHHHHHHHHHHHHHhccccchhHHHHHH
Confidence 5599999999999999887643222211 1 2333322221 122222111100 0 1334899999999
Q ss_pred hhcChHHHHHHHHHHhCCCCChhhhhchHH--HHHHHh---cChHHHHhHHhhcCCCCCCCCCCCceeeccccCCcccCC
Q 019700 240 LKEQPSLRLKMLAEFLGCPFSPAEEANGLV--DDILKL---CSFDNLSNLEVNRNGKMSSGEGYNAFFRRGVVGDWMNYL 314 (337)
Q Consensus 240 L~~d~~~~v~~I~~FLg~~~~~~~~~~~~l--~~iv~~---~sf~~mk~~~~n~~~~~~~~~~~~~f~RkG~vGdWk~~f 314 (337)
|+..|++.+++|.+||++++++.. + +..+-+ .|..+. ..++ ++ ...-+.-+.-..|-..+
T Consensus 243 LVlhPe~~mr~Il~FLdipw~d~v-----LhHedlIgk~~gVsLskv-----ErSs----dQ-VikpVNl~AlskWvg~i 307 (378)
T KOG3988|consen 243 LVLHPEEWMRRILKFLDIPWSDAV-----LHHEDLIGKPGGVSLSKV-----ERSS----DQ-VIKPVNLEALSKWVGCI 307 (378)
T ss_pred HHhCHHHHHHHHHHHhCCCcHHHH-----HhHHHhcCCCCCCChhhh-----hccH----hh-hhccccHHHHHHHhccC
Confidence 999999999999999999998875 2 111111 010000 0000 00 00112334556899999
Q ss_pred cHHHHHHHHHHHHHHcCCCCC
Q 019700 315 TPEMVGRLDQIIEQKLHGFGL 335 (337)
Q Consensus 315 t~eq~~~~~~~~~e~l~~~gl 335 (337)
+++-.+.++.+ +.-|+..|+
T Consensus 308 p~dvvrdma~i-APmL~~LGY 327 (378)
T KOG3988|consen 308 PEDVVRDMADI-APMLAILGY 327 (378)
T ss_pred CHHHHHHHHHH-HHHHHHhCC
Confidence 99999988865 445555544
No 6
>KOG3704 consensus Heparan sulfate D-glucosaminyl 3-O-sulfotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.90 E-value=8.8e-06 Score=73.39 Aligned_cols=154 Identities=18% Similarity=0.274 Sum_probs=95.5
Q ss_pred CCCcccCCCCCceEEEEecCccceeehhHHhhhccCCCCCCCCCHHHHHHHHhcc---c-------cccCChHHHHHHHH
Q 019700 153 LPASVKDSSSACKLVYLCRNPKDIFVSLWHFTNKLRPEEKGTNSLEETFDKFCRG---V-------SLYGPFWDHILGYW 222 (337)
Q Consensus 153 lp~~l~~~~~~~K~I~i~RdPrDv~vS~y~~~~~~~~~~~~~~~~~~~~~~f~~g---~-------~~~g~~~~hv~~~w 222 (337)
.|+.+...+|..|.|+|+|||.-.++|-|-....... .--+|+.+ .|.++ . +..|-|..|+..|.
T Consensus 180 ~P~Rv~~M~pd~KLivvvR~PvtRaiSDyTQt~sk~~---~~P~fe~l--afkn~~~g~id~~w~ai~iglY~~Hle~WL 254 (360)
T KOG3704|consen 180 VPKRVYSMNPDTKLIVVVRDPVTRAISDYTQTLSKKP---DIPTFEVL--AFKNRTAGLIDTSWKAIRIGLYAVHLENWL 254 (360)
T ss_pred cchHHHhcCCCceEEEEEcCchhhhHHHHHHHHhcCC---CCCceeee--eeecCccceeecchhhhhhhHHHHHHHHHH
Confidence 4666665556699999999999999999986554332 11233322 12222 1 23356889999987
Q ss_pred HHhccCCCeEEEEechhhhcChHHHHHHHHHHhCCCCChhhhhchHHHHHHHhcChHHHHhH-HhhcCCCCCCCCCCCce
Q 019700 223 KASMEKPDRVFFLKYEELKEQPSLRLKMLAEFLGCPFSPAEEANGLVDDILKLCSFDNLSNL-EVNRNGKMSSGEGYNAF 301 (337)
Q Consensus 223 ~~~~~~~~~vl~l~YEDL~~d~~~~v~~I~~FLg~~~~~~~~~~~~l~~iv~~~sf~~mk~~-~~n~~~~~~~~~~~~~f 301 (337)
... .-.++|||.=|-|+.||.+++.|+-+|||+.-.-.+ +|.-|++-|.- ...+. .+......
T Consensus 255 ~yF--pL~q~lfVsGerli~dPa~E~~rVqdFLgLkr~it~----------khfyFnktKGFpClkK~----e~ss~prC 318 (360)
T KOG3704|consen 255 RYF--PLRQILFVSGERLISDPAGELGRVQDFLGLKRVITD----------KHFYFNKTKGFPCLKKA----EDSSRPRC 318 (360)
T ss_pred HhC--chhheEEecCceeecCcHHHHHHHHHHhcccceecc----------ceeEEecCCCceeeecc----ccCCCccc
Confidence 764 335999999999999999999999999999742221 12333333321 00000 00000111
Q ss_pred eeccccCCcccCCcHHHHHHHHHHHHH
Q 019700 302 FRRGVVGDWMNYLTPEMVGRLDQIIEQ 328 (337)
Q Consensus 302 ~RkG~vGdWk~~ft~eq~~~~~~~~~e 328 (337)
+-| .-|.=..+..++.++++.+.|.+
T Consensus 319 Lgk-sKgr~hp~idp~~i~rLrefyrp 344 (360)
T KOG3704|consen 319 LGK-SKGRTHPHIDPEVIRRLREFYRP 344 (360)
T ss_pred ccc-ccCCCCCCCCHHHHHHHHHHhcc
Confidence 111 22444568899999999998875
No 7
>PF09037 Sulphotransf: Stf0 sulphotransferase; InterPro: IPR024628 Members of this family are essential for the biosynthesis of sulpholipid-1 in prokaryotes. They adopt a structure that belongs to the sulphotransferase superfamily, consisting of a single domain with a core four-stranded parallel beta-sheet flanked by alpha-helices []. ; PDB: 1TEX_B.
Probab=97.09 E-value=0.00061 Score=62.17 Aligned_cols=90 Identities=19% Similarity=0.272 Sum_probs=47.6
Q ss_pred ceEEEEec-CccceeehhHHhhhccCCCCC----C----------CCCHHHHHHHHhccccccCChHHHHHHHHHHhc-c
Q 019700 164 CKLVYLCR-NPKDIFVSLWHFTNKLRPEEK----G----------TNSLEETFDKFCRGVSLYGPFWDHILGYWKASM-E 227 (337)
Q Consensus 164 ~K~I~i~R-dPrDv~vS~y~~~~~~~~~~~----~----------~~~~~~~~~~f~~g~~~~g~~~~hv~~~w~~~~-~ 227 (337)
.++||+.| |-..-+||+..-.+....... . .-++++... .+.- .......|.... .
T Consensus 114 ~~~I~L~R~d~l~QAvS~~~A~qtg~w~~~~~~~~~~r~~~~~~~~yd~~~i~~-~i~~-------i~~~~~~w~~~f~~ 185 (245)
T PF09037_consen 114 VKFIHLRRRDLLRQAVSLWRARQTGVWHQHADGTRDERVSPPRKPRYDFEEIAH-LIDR-------IEDQEAFWRNWFAR 185 (245)
T ss_dssp -EEEEEE-S-HHHHHHHHHHHHHHS-----------TT----------HHHHHH-HHHH-------HHHHHHHHHHHHHH
T ss_pred eEEEEEEeCCHHHHHHHHHHHHhCCCcccCCCCCccccccccccceeCHHHHHH-HHHH-------HHHHHHHHHHHHHH
Confidence 89999997 999999999985543221100 0 001122111 1100 001111122111 1
Q ss_pred CCCeEEEEechhhhcChHHHHHHHHHHhCCCCCh
Q 019700 228 KPDRVFFLKYEELKEQPSLRLKMLAEFLGCPFSP 261 (337)
Q Consensus 228 ~~~~vl~l~YEDL~~d~~~~v~~I~~FLg~~~~~ 261 (337)
...+-+.|.||||.+||.+++.+|++|||++...
T Consensus 186 ~~i~pl~i~YEdL~~dp~~~~~~Vl~fLgv~~~~ 219 (245)
T PF09037_consen 186 HGIEPLEITYEDLLADPQKTVARVLDFLGVDPPL 219 (245)
T ss_dssp TT---EEEEHHHHHHHHHHHHHHHHHHTTS-GGG
T ss_pred cCCCeeEEEHHHHHhCHHHHHHHHHHHhCCCCcc
Confidence 2235588999999999999999999999997643
No 8
>KOG3703 consensus Heparan sulfate N-deacetylase/N-sulfotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.00 E-value=0.0073 Score=59.86 Aligned_cols=95 Identities=16% Similarity=0.254 Sum_probs=67.2
Q ss_pred CCceEEEEecCccceeehhHHhhhccCCCCC---------CCCC-HHHHHHHHhccccccCChHHHHHHHHHHhccCCCe
Q 019700 162 SACKLVYLCRNPKDIFVSLWHFTNKLRPEEK---------GTNS-LEETFDKFCRGVSLYGPFWDHILGYWKASMEKPDR 231 (337)
Q Consensus 162 ~~~K~I~i~RdPrDv~vS~y~~~~~~~~~~~---------~~~~-~~~~~~~f~~g~~~~g~~~~hv~~~w~~~~~~~~~ 231 (337)
|.+|+|-|.-||-|.+-|+|.|.+...-... ..++ -...++..-+--+..|-|..|+..|.... ...+
T Consensus 686 P~AKIvtILinPadRAYSWyQHqraH~DpvAl~~~fyeVIsas~~aps~lk~lq~RClvpG~Ya~HlerWL~y~--~~~Q 763 (873)
T KOG3703|consen 686 PHAKIVTILINPADRAYSWYQHQRAHEDPVALNYSFYEVISASSSAPSALKALQNRCLVPGWYATHLERWLTYF--PAQQ 763 (873)
T ss_pred CcceEEEEEeChHHhhhHHHHHHhhcCCcceecceeEEEEecCCCCcHHHHHHHHhccCcchHHHHHHHHHHhC--Cccc
Confidence 4499999999999999999999886432100 0011 11111111111123466778999987765 4468
Q ss_pred EEEEechhhhcChHHHHHHHHHHhCCC
Q 019700 232 VFFLKYEELKEQPSLRLKMLAEFLGCP 258 (337)
Q Consensus 232 vl~l~YEDL~~d~~~~v~~I~~FLg~~ 258 (337)
+++|.=+.|..||..++..|-.|||+.
T Consensus 764 lliiDg~qLr~~Pa~vm~~~qkfLgv~ 790 (873)
T KOG3703|consen 764 LLIIDGQQLRTNPATVMNELQKFLGVT 790 (873)
T ss_pred EEEEccHHhccCcHHHHHHHHHHhCCC
Confidence 999999999999999999999999994
No 9
>PF06990 Gal-3-0_sulfotr: Galactose-3-O-sulfotransferase ; InterPro: IPR009729 This family consists of several mammalian galactose-3-O-sulphotransferase proteins. Gal-3-O-sulphotransferase is thought to play a critical role in 3'-sulphation of N-acetyllactosamine in both O- and N-glycans [].; GO: 0001733 galactosylceramide sulfotransferase activity, 0009058 biosynthetic process, 0005794 Golgi apparatus, 0016021 integral to membrane
Probab=93.83 E-value=0.16 Score=49.69 Aligned_cols=110 Identities=15% Similarity=0.153 Sum_probs=62.7
Q ss_pred ccccCCCCEEEEcCCCCcchHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCccceeEeecccCCCccccccCCCCceEee
Q 019700 67 HFQAQDSDILLVTTPKAGTTWLKAITFAIVNRLRYVDNPCNHPLLTNNPHELVPFIELKLYVDNQVPDLTTLTSPRLFAT 146 (337)
Q Consensus 67 ~f~~r~~DV~ivsyPKSGTTW~~~il~~i~~~~~~~~~~~~~~l~~~~~~~~~P~lE~~~~~~~~~~~~~~~~~pr~ikt 146 (337)
.=+++.+=|||=|. |||+|=++.|+...-...+...+ .|... ...-..|..-.. .-...........++..
T Consensus 62 ~C~P~~nIvFlKTH-KTgSSTv~nIL~Rfg~~~nL~~a---lP~~~-~~~~~~P~~f~~----~~v~~~~~~~~~nIl~~ 132 (402)
T PF06990_consen 62 SCQPKTNIVFLKTH-KTGSSTVQNILFRFGEKHNLTFA---LPRGG-RNQFGYPAPFNA----RFVEGYPPGGRFNILCH 132 (402)
T ss_pred cccccceEEEEecC-CcccHHHHHHHHHHHHHcCCEEe---cCCCC-CCCCCCCCcCCc----cccccCCCCCCceEEee
Confidence 44555666666665 99999999999877543332211 01000 000011211000 00111112244678899
Q ss_pred ccccccC-CCcccCCCCCceEEEEecCccceeehhHHhhhcc
Q 019700 147 HLPFVSL-PASVKDSSSACKLVYLCRNPKDIFVSLWHFTNKL 187 (337)
Q Consensus 147 Hlp~~~l-p~~l~~~~~~~K~I~i~RdPrDv~vS~y~~~~~~ 187 (337)
|+.|+.- -..+..++ +++|-|+|||...+.|.|+|++..
T Consensus 133 H~rfn~~~~~~lmP~d--t~yiTILRdP~~~feS~f~Yy~~~ 172 (402)
T PF06990_consen 133 HMRFNRPEVRKLMPPD--TKYITILRDPVSHFESSFNYYKRY 172 (402)
T ss_pred hhccCHHHHHHhCCCC--CeEEEEEcCHHHHHHhHHHHhhcc
Confidence 9988641 12233234 899999999999999999998753
No 10
>KOG3922 consensus Sulfotransferases [Posttranslational modification, protein turnover, chaperones]
Probab=93.64 E-value=0.063 Score=49.66 Aligned_cols=98 Identities=18% Similarity=0.369 Sum_probs=57.8
Q ss_pred CEEEEcCCCCcchHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCccceeEeecccCCCcc---ccc--cCCCCceEeecc
Q 019700 74 DILLVTTPKAGTTWLKAITFAIVNRLRYVDNPCNHPLLTNNPHELVPFIELKLYVDNQVP---DLT--TLTSPRLFATHL 148 (337)
Q Consensus 74 DV~ivsyPKSGTTW~~~il~~i~~~~~~~~~~~~~~l~~~~~~~~~P~lE~~~~~~~~~~---~~~--~~~~pr~iktHl 148 (337)
-|+----||||+|=...|+.-|.....+. +...+.+..-+-+... +... .+. ....|-++.-|.
T Consensus 80 vViyNRVpKtGStTf~niaydL~ekn~F~-------vlh~nvtkn~~vlsl~----dQ~qfvknIssw~e~~P~~yhgHV 148 (361)
T KOG3922|consen 80 VVIYNRVPKTGSTTFVNIAYDLSEKNGFH-------VLHINVTKNETVLSLP----DQQQFVKNISSWTEMKPALYHGHV 148 (361)
T ss_pred EEEEecCCCccchhHHHHHHHHHhccCce-------EEEeeccccceeeccH----HHHHHHHhhccccccCcceeeeee
Confidence 45566789999999999998887554432 1111111111111110 0111 111 235688999998
Q ss_pred ccccCCC-cccCCCCCceEEEEecCccceeehhHHhhhc
Q 019700 149 PFVSLPA-SVKDSSSACKLVYLCRNPKDIFVSLWHFTNK 186 (337)
Q Consensus 149 p~~~lp~-~l~~~~~~~K~I~i~RdPrDv~vS~y~~~~~ 186 (337)
.|--..+ ++ .+ .-+|-|+|||.+.++|+|+|.+-
T Consensus 149 ~FldFskFgi--~~--PIYINvIRdPveRllS~yyflRf 183 (361)
T KOG3922|consen 149 AFLDFSKFGI--AR--PIYINVIRDPVERLLSYYYFLRF 183 (361)
T ss_pred eeeehhhhCC--CC--ceEEeeeccHHHHHHhHhhhhcc
Confidence 7633221 22 23 56788899999999999998873
No 11
>PF03567 Sulfotransfer_2: Sulfotransferase family; InterPro: IPR005331 This entry consists of a number of carbohydrate sulphotransferases that transfer sulphate to carbohydrate groups in glycoproteins and glycolipids. These include: Carbohydrate sulphotransferases 8 and 9, which transfer sulphate to position 4 of non-reducing N-acetylgalactosamine (GalNAc) residues in both N-glycans and O-glycans []. They function in the biosynthesis of glycoprotein hormones lutropin and thyrotropin, by mediating sulphation of their carbohydrate structures. Carbohydrate sulphotransferase 10, which transfers sulphate to position 3 of the terminal glucuronic acid in both protein- and lipid-linked oligosaccharides []. It directs the biosynthesis of the HNK-1 carbohydrate structure, a sulphated glucuronyl-lactosaminyl residue carried by many neural recognition molecules, which is involved in cell interactions during ontogenetic development and in synaptic plasticity in the adult. Carbohydrate sulphotransferases 11 - 13, which catalyze the transfer of sulphate to position 4 of the GalNAc residue of chondroitin []. Chondroitin sulphate constitutes the predominant proteoglycan present in cartilage and is distributed on the surfaces of many cells and extracellular matrices. Some, thought not all, of these enzymes also transfer sulphate to dermatan. Carbohydrate sulphotransferase D4ST1, which transfers sulphate to position 4 of the GalNAc residue of dermatan sulphate []. Heparan sulphate 2-O-sulphotransferase (HS2ST). Heparan sulphate (HS) is a co-receptor for a number of growth factors, morphogens, and adhesion proteins. HS biosynthetic modifications may determine the strength and outcome of HS-ligand interactions. Mice that lack HS2ST undergo developmental failure only after midgestation,the most dramatic effect being the complete failure of kidney development []. Heparan-sulphate 6-O-sulphotransferase (HS6ST), which catalyses the transfer of sulphate from adenosine 3'-phosphate, 5'-phosphosulphate to the 6th position of the N -sulphoglucosamine residue in heparan sulphate []. Chondroitin 6-sulphotransferase catalyses the transfer of sulphate to position 6 of the N-acetylgalactosamine residue of chondroitin []. ; GO: 0008146 sulfotransferase activity, 0016021 integral to membrane; PDB: 3F5F_A.
Probab=92.81 E-value=0.095 Score=46.78 Aligned_cols=26 Identities=31% Similarity=0.438 Sum_probs=18.7
Q ss_pred CCCEEEEcCCCCcchHHHHHHHHHHh
Q 019700 72 DSDILLVTTPKAGTTWLKAITFAIVN 97 (337)
Q Consensus 72 ~~DV~ivsyPKSGTTW~~~il~~i~~ 97 (337)
...|+.+--||||.|=+..++..+..
T Consensus 8 ~~~i~f~~ipK~g~Ts~~~~l~~~~~ 33 (253)
T PF03567_consen 8 KHKIIFCHIPKTGGTSLKSILRRLYG 33 (253)
T ss_dssp --EEEE---SSSSHHHHHHHHHHHHH
T ss_pred CCcEEEEecCCHHHHHHHHHHHHHhh
Confidence 44677899999999999999998876
No 12
>PF09037 Sulphotransf: Stf0 sulphotransferase; InterPro: IPR024628 Members of this family are essential for the biosynthesis of sulpholipid-1 in prokaryotes. They adopt a structure that belongs to the sulphotransferase superfamily, consisting of a single domain with a core four-stranded parallel beta-sheet flanked by alpha-helices []. ; PDB: 1TEX_B.
Probab=82.29 E-value=0.97 Score=41.23 Aligned_cols=21 Identities=24% Similarity=0.336 Sum_probs=17.4
Q ss_pred EEEcCCCCcchHHHHHHHHHH
Q 019700 76 LLVTTPKAGTTWLKAITFAIV 96 (337)
Q Consensus 76 ~ivsyPKSGTTW~~~il~~i~ 96 (337)
+|||-||||+||+.++|.+.-
T Consensus 3 ii~~t~RSGStlL~~~L~~tg 23 (245)
T PF09037_consen 3 IICSTQRSGSTLLCELLRATG 23 (245)
T ss_dssp EEEE-TTSSHHHHHHHHHHCT
T ss_pred EEEeCCCCcHHHHHHHHHhCc
Confidence 699999999999999887653
No 13
>COG4424 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=69.59 E-value=4 Score=36.00 Aligned_cols=51 Identities=18% Similarity=0.157 Sum_probs=38.8
Q ss_pred eEEEEechhhhcChHHHHHHHHHHhCCCCChhhhhchHHHHHHHhcChHHHHh
Q 019700 231 RVFFLKYEELKEQPSLRLKMLAEFLGCPFSPAEEANGLVDDILKLCSFDNLSN 283 (337)
Q Consensus 231 ~vl~l~YEDL~~d~~~~v~~I~~FLg~~~~~~~~~~~~l~~iv~~~sf~~mk~ 283 (337)
.-+-|-||.|-+||...+.+||+.||++....- .-.+++..+..|-+.|..
T Consensus 188 ep~riaYe~Lsadp~aava~~~ealgv~~p~a~--~p~~a~qad~~s~eWv~R 238 (250)
T COG4424 188 EPIRIAYEVLSADPTAAVASVLEALGVDPPLAP--APMLARQADQRSDEWVDR 238 (250)
T ss_pred cHHHHhHHHHccCcHHHHHHHHHHhCCCCCCCc--CchHHHhhhhhhHHHHHH
Confidence 445688999999999999999999999875432 122666667777777765
No 14
>COG4424 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=57.32 E-value=14 Score=32.68 Aligned_cols=26 Identities=31% Similarity=0.330 Sum_probs=20.7
Q ss_pred CEEEEcCCCCcchHHHHHHHHHHhcc
Q 019700 74 DILLVTTPKAGTTWLKAITFAIVNRL 99 (337)
Q Consensus 74 DV~ivsyPKSGTTW~~~il~~i~~~~ 99 (337)
--+|+|-||||+||+-.+|..--+.|
T Consensus 7 ~Ylilt~pRSGStlLckllaatG~sG 32 (250)
T COG4424 7 PYLILTTPRSGSTLLCKLLAATGCSG 32 (250)
T ss_pred ceeEecCCCCcchHHHHHHHhcCCCC
Confidence 45799999999999998887654444
No 15
>KOG4651 consensus Chondroitin 6-sulfotransferase and related sulfotransferases [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=49.49 E-value=6.9 Score=37.24 Aligned_cols=34 Identities=21% Similarity=0.303 Sum_probs=27.6
Q ss_pred ccCCCCEEEEcCCCCcchHHHHHHHHHHhccCCC
Q 019700 69 QAQDSDILLVTTPKAGTTWLKAITFAIVNRLRYV 102 (337)
Q Consensus 69 ~~r~~DV~ivsyPKSGTTW~~~il~~i~~~~~~~ 102 (337)
.+-...+..|.-|||++|-+..|...|.+.+.+.
T Consensus 78 vapk~kl~~C~I~Ksms~l~~nimc~L~n~~~y~ 111 (324)
T KOG4651|consen 78 VAPKYKLIYCEIPKSMSTLWTNIMCLLYNETQYT 111 (324)
T ss_pred eCCCCceEEEeecccHhhhhhhhheeEeChhhhc
Confidence 3445678899999999999999998888766553
No 16
>KOG4157 consensus beta-1,6-N-acetylglucosaminyltransferase, contains WSC domain [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones]
Probab=42.45 E-value=25 Score=34.65 Aligned_cols=203 Identities=16% Similarity=0.186 Sum_probs=103.2
Q ss_pred ccccCCCCEEEEcCCCCcchHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCccceeEeecccCCCc---cccccCCCCce
Q 019700 67 HFQAQDSDILLVTTPKAGTTWLKAITFAIVNRLRYVDNPCNHPLLTNNPHELVPFIELKLYVDNQV---PDLTTLTSPRL 143 (337)
Q Consensus 67 ~f~~r~~DV~ivsyPKSGTTW~~~il~~i~~~~~~~~~~~~~~l~~~~~~~~~P~lE~~~~~~~~~---~~~~~~~~pr~ 143 (337)
.+-+-..-+-+.|+|+.|+||++.++..+..--.. .-+...... ..+. ........-+.
T Consensus 199 ~~~p~ss~~~~st~~~~~~t~~~~~~~tat~~~t~-----------------s~y~~g~~~-~~~~~~~~n~~~~~~~~~ 260 (418)
T KOG4157|consen 199 SSLPSSTAVPLSSFPGLGNTWARYLIQQATGFLTG-----------------SIYKDGGLL-KTGFPGERNHVCNSNVSL 260 (418)
T ss_pred ccCCCCCcccceeeeecccceeeeeeeceeeEeee-----------------eEEeccccc-cccccccccccccceeee
Confidence 45555555889999999999999888766421000 000000000 0000 00011122355
Q ss_pred EeeccccccCCCcccCCCCCceEEEEecCccceeehhHHhhhccCCCCCCCCCHHH-HHHHHhccccccCChHHHHHHHH
Q 019700 144 FATHLPFVSLPASVKDSSSACKLVYLCRNPKDIFVSLWHFTNKLRPEEKGTNSLEE-TFDKFCRGVSLYGPFWDHILGYW 222 (337)
Q Consensus 144 iktHlp~~~lp~~l~~~~~~~K~I~i~RdPrDv~vS~y~~~~~~~~~~~~~~~~~~-~~~~f~~g~~~~g~~~~hv~~~w 222 (337)
+|+|...... .... ...|.++|+|.=.++..+...............+.. .+..+..+ ..-+|-.|..+ |
T Consensus 261 ~~~~~~~~~v----~~~~--~~~i~ll~~~~~~~~~~~~r~~~~~~~~~~~~~y~~~~~~~~~~~--~~~~~ss~~~~-w 331 (418)
T KOG4157|consen 261 VKTGEWGSVV----GAVF--SAAILLLRDPEKAYIAEFNRKSGGHIGFASPKSYKSKKWPQFVSN--KLSGWSSHTLS-W 331 (418)
T ss_pred eecceeccee----eecc--hhheeeeccccccccccccccccccccccccchhccccccccccC--CCCCccccchh-h
Confidence 6777654411 1122 456777787775444443322111100000000100 01112111 11234466666 4
Q ss_pred HHhccCCCeEEEEechhhhcChHHHHHHHHHHhCCCCChhhhhchHHHHHHHhcChHHHHhHHhhcCCCCCCCCCCCcee
Q 019700 223 KASMEKPDRVFFLKYEELKEQPSLRLKMLAEFLGCPFSPAEEANGLVDDILKLCSFDNLSNLEVNRNGKMSSGEGYNAFF 302 (337)
Q Consensus 223 ~~~~~~~~~vl~l~YEDL~~d~~~~v~~I~~FLg~~~~~~~~~~~~l~~iv~~~sf~~mk~~~~n~~~~~~~~~~~~~f~ 302 (337)
.. ...+++.++||+|..++...+..+..|+|.+..+... +.. . ......+.
T Consensus 332 ~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----l~~-------------~---------~~~e~~~~ 382 (418)
T KOG4157|consen 332 AR---KGTGSLVVFYDDLVHPTVAPLRLIVDFLQHPVPESLM----LCD-------------I---------MQKEGIFG 382 (418)
T ss_pred hc---ccccceeEEeecccccccccccccccccCcccccccc----CCc-------------c---------ccccCccc
Confidence 43 2236699999999999999999999999987766530 000 0 01223455
Q ss_pred eccccCCcccCCcHHHHHHHHHH
Q 019700 303 RRGVVGDWMNYLTPEMVGRLDQI 325 (337)
Q Consensus 303 RkG~vGdWk~~ft~eq~~~~~~~ 325 (337)
|.|....=.+.+++.+.+.++-.
T Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~ 405 (418)
T KOG4157|consen 383 RRGKRLLSPDPLTDSMLDEVKGL 405 (418)
T ss_pred ccCCccCCCCcchhhhhhhhhcc
Confidence 66666666677777777766544
No 17
>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase. Discriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The discriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=38.15 E-value=43 Score=30.44 Aligned_cols=53 Identities=17% Similarity=0.263 Sum_probs=37.9
Q ss_pred cccccCChHHHHHHHHHHhccCCCeEEEEechhhhc--C---hHHHHHHHHHHhCCCCCh
Q 019700 207 GVSLYGPFWDHILGYWKASMEKPDRVFFLKYEELKE--Q---PSLRLKMLAEFLGCPFSP 261 (337)
Q Consensus 207 g~~~~g~~~~hv~~~w~~~~~~~~~vl~l~YEDL~~--d---~~~~v~~I~~FLg~~~~~ 261 (337)
|.+..|.+...+..|..++.. ...+++|.||.-. . -...|.+.+++||+.+++
T Consensus 12 G~LHlG~~~~al~n~l~ar~~--~G~~ilRieDtd~~r~~~~~~~~i~~dL~wlGl~~d~ 69 (239)
T cd00808 12 GFLHIGGARTALFNYLFARKH--GGKFILRIEDTDQERSVPEAEEAILEALKWLGLDWDE 69 (239)
T ss_pred CcccHHHHHHHHHHHHHHHHc--CCeEEEEECcCCCCCCchHHHHHHHHHHHHcCCCCCc
Confidence 445667777888888877633 3588999999632 2 235666778899999986
No 18
>PF07498 Rho_N: Rho termination factor, N-terminal domain; InterPro: IPR011112 The Rho termination factor disengages newly transcribed RNA from its DNA template at certain, specific transcripts. It is thought that two copies of Rho bind to RNA and that Rho functions as a hexamer of protomers []. This domain is found to the N terminus of the RNA binding domain (IPR011113 from INTERPRO).; GO: 0006353 transcription termination, DNA-dependent; PDB: 1A8V_B 1PVO_A 1PV4_D 3ICE_A 1XPU_C 1XPO_D 1XPR_F 2A8V_B 2HT1_B 1A63_A ....
Probab=36.14 E-value=40 Score=21.73 Aligned_cols=37 Identities=30% Similarity=0.232 Sum_probs=24.5
Q ss_pred hhhcChHHHHHHHHHHhCCCCChhhhhchHHHHHHHh
Q 019700 239 ELKEQPSLRLKMLAEFLGCPFSPAEEANGLVDDILKL 275 (337)
Q Consensus 239 DL~~d~~~~v~~I~~FLg~~~~~~~~~~~~l~~iv~~ 275 (337)
||.+-+...++.||+-+|++-.....+..++.+|++.
T Consensus 1 eL~~~~~~eL~~iAk~lgI~~~~~~~K~eLI~~Il~~ 37 (43)
T PF07498_consen 1 ELKSMTLSELREIAKELGIEGYSKMRKQELIFAILKA 37 (43)
T ss_dssp HHHCS-HHHHHHHHHCTT-TTGCCS-HHHHHHHHHHH
T ss_pred CcccCCHHHHHHHHHHcCCCCCCcCCHHHHHHHHHHH
Confidence 5677788999999999999754443444556776653
No 19
>PF07582 AP_endonuc_2_N: AP endonuclease family 2 C terminus; InterPro: IPR011418 DNA damaging agents such as the anti-tumour drugs bleomycin and neocarzinostatin or those that generate oxygen radicals produce a variety of lesions in DNA. Amongst these is base-loss which forms apurinic/apyrimidinic (AP) sites or strand breaks with atypical 3' termini. DNA repair at the AP sites is initiated by specific endonuclease cleavage of the phosphodiester backbone. Such endonucleases are also generally capable of removing blocking groups from the 3' terminus of DNA strand breaks. AP endonucleases can be classified into two families based on sequence similarity []. This entry represents a highly-conserved sequence found at the C terminus of several apurinic/apyrimidinic (AP) endonucleases in a range of Gram-positive and Gram-negative bacteria. ; PDB: 3LMZ_A 2ZDS_D.
Probab=32.52 E-value=1.1e+02 Score=20.97 Aligned_cols=29 Identities=21% Similarity=0.158 Sum_probs=22.2
Q ss_pred CeEEEEechhhhcChHHHHHHHHHHhCCC
Q 019700 230 DRVFFLKYEELKEQPSLRLKMLAEFLGCP 258 (337)
Q Consensus 230 ~~vl~l~YEDL~~d~~~~v~~I~~FLg~~ 258 (337)
.-++.|-+||...++...+++-++||..-
T Consensus 15 dG~~siE~ED~~~~~~~G~~~a~~~lr~~ 43 (55)
T PF07582_consen 15 DGWLSIEHEDALMDPEEGAREAAAFLRKL 43 (55)
T ss_dssp -SEEEE---STTTSHHHHHHHHHHHHHTT
T ss_pred CceEEEEeecCCCCHHHHHHHHHHHHHHh
Confidence 46899999999999999999999998643
No 20
>COG1158 Rho Transcription termination factor [Transcription]
Probab=30.14 E-value=46 Score=31.96 Aligned_cols=28 Identities=43% Similarity=0.547 Sum_probs=21.6
Q ss_pred CCCCEEEEcCCCCc-chHHHHHHHHHHhc
Q 019700 71 QDSDILLVTTPKAG-TTWLKAITFAIVNR 98 (337)
Q Consensus 71 r~~DV~ivsyPKSG-TTW~~~il~~i~~~ 98 (337)
+..--+||+-||+| ||.||+|...|..+
T Consensus 172 kGQR~LIVAPPkaGKT~lLq~IA~aIt~N 200 (422)
T COG1158 172 KGQRGLIVAPPKAGKTTLLQNIANAITTN 200 (422)
T ss_pred CCceeeEecCCCCCchHHHHHHHHHHhcC
Confidence 34567899999999 55778888888743
No 21
>PF01498 HTH_Tnp_Tc3_2: Transposase; InterPro: IPR002492 Transposase proteins are necessary for efficient DNA transposition. This family includes the amino-terminal region of Tc1, Tc1A, Tc1B and Tc2B transposases of Caenorhabditis elegans. The region encompasses the specific DNA binding and second DNA recognition domains as well as an amino-terminal region of the catalytic domain of Tc3 as described in []. Tc3 is a member of the Tc1/mariner family of transposable elements. This entry also includes histone-lysine N-methyltransferase SETMAR, which is a SET domain and mariner transposase fusion gene-containing protein. This histone methyltransferase has sequence-specific DNA-binding activity and recognises the 19-mer core of the 5'-terminal inverted repeats (TIRs) of the Hsmar1 element. This protein has DNA nicking activity, and has in vivo end joining activity and may mediate genomic integration of foreign DNA [, , , ]. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated, 0015074 DNA integration; PDB: 3K9K_B 3F2K_B 3K9J_B 1U78_A.
Probab=26.53 E-value=1.4e+02 Score=21.06 Aligned_cols=62 Identities=15% Similarity=0.266 Sum_probs=31.2
Q ss_pred hhhcChHHHHHHHHHHh---CCCCChhhhhchHHHHHHHhcChHHHHhHHhhcCCCCCCCCCCCceeeccccCCcccCCc
Q 019700 239 ELKEQPSLRLKMLAEFL---GCPFSPAEEANGLVDDILKLCSFDNLSNLEVNRNGKMSSGEGYNAFFRRGVVGDWMNYLT 315 (337)
Q Consensus 239 DL~~d~~~~v~~I~~FL---g~~~~~~~~~~~~l~~iv~~~sf~~mk~~~~n~~~~~~~~~~~~~f~RkG~vGdWk~~ft 315 (337)
...+||..+...|..-| |..++... +.+++.... + ++...-|+-.||
T Consensus 7 ~v~~~p~~s~~~i~~~l~~~~~~vS~~T-----I~r~L~~~g------------------------~-~~~~~~~kP~Ls 56 (72)
T PF01498_consen 7 MVRRNPRISAREIAQELQEAGISVSKST-----IRRRLREAG------------------------L-KKRKARKKPFLS 56 (72)
T ss_dssp ---------HHHHHHHT---T--S-HHH-----HHHHHHHT-------------------------E-EEETTEEEES--
T ss_pred HHHHCCCCCHHHHHHHHHHccCCcCHHH-----HHHHHHHcC------------------------c-cccccccCCCCC
Confidence 45678889999999999 99998877 776654221 1 236667788999
Q ss_pred HHHHHHHHHHHHHHc
Q 019700 316 PEMVGRLDQIIEQKL 330 (337)
Q Consensus 316 ~eq~~~~~~~~~e~l 330 (337)
+++.+.=-+++.+.+
T Consensus 57 ~~~~~~Rl~fA~~h~ 71 (72)
T PF01498_consen 57 PKHKKKRLEFAKEHL 71 (72)
T ss_dssp HHHHHHHHHHH----
T ss_pred HHHHHHHHHHhhhcc
Confidence 999877666766654
No 22
>PF03484 B5: tRNA synthetase B5 domain; InterPro: IPR005147 Domain B5 is found in phenylalanine-tRNA synthetase beta subunits. This domain has been shown to bind DNA through a winged helix-turn-helix motif []. Phenylalanine-tRNA synthetase may influence common cellular processes via DNA binding, in addition to its aminoacylation function.; GO: 0000287 magnesium ion binding, 0003723 RNA binding, 0005524 ATP binding, 0006432 phenylalanyl-tRNA aminoacylation; PDB: 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B 3PCO_D 2CXI_C 1JJC_B 1EIY_B ....
Probab=26.04 E-value=73 Score=22.71 Aligned_cols=28 Identities=36% Similarity=0.536 Sum_probs=19.6
Q ss_pred HHHHHHHhCCCCChhhhhchHHHHHHHhcChHH
Q 019700 248 LKMLAEFLGCPFSPAEEANGLVDDILKLCSFDN 280 (337)
Q Consensus 248 v~~I~~FLg~~~~~~~~~~~~l~~iv~~~sf~~ 280 (337)
+.+|.+.||.+++.++ +.+++++..|+.
T Consensus 8 ~~~i~~~lG~~i~~~~-----i~~~L~~lg~~~ 35 (70)
T PF03484_consen 8 LDKINKLLGIDISPEE-----IIKILKRLGFKV 35 (70)
T ss_dssp HHHHHHHHTS---HHH-----HHHHHHHTT-EE
T ss_pred HHHHHHHhCCCCCHHH-----HHHHHHHCCCEE
Confidence 4678899999999998 888888877653
No 23
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=22.53 E-value=1e+02 Score=25.33 Aligned_cols=25 Identities=20% Similarity=0.266 Sum_probs=17.0
Q ss_pred EEEEcCCCCcchHH-HHHHHHHHhcc
Q 019700 75 ILLVTTPKAGTTWL-KAITFAIVNRL 99 (337)
Q Consensus 75 V~ivsyPKSGTTW~-~~il~~i~~~~ 99 (337)
|.||++..||-|.+ +.|+..+..++
T Consensus 3 v~VvG~~~sGKTTl~~~Li~~l~~~g 28 (140)
T PF03205_consen 3 VQVVGPKNSGKTTLIRKLINELKRRG 28 (140)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHhHcC
Confidence 67999999996655 45555555443
No 24
>cd01038 Endonuclease_DUF559 Domain of unknown function, appears to be related to a diverse group of endonucleases.
Probab=22.37 E-value=1.1e+02 Score=23.75 Aligned_cols=26 Identities=19% Similarity=0.092 Sum_probs=23.3
Q ss_pred CeEEEEechhhhcChHHHHHHHHHHh
Q 019700 230 DRVFFLKYEELKEQPSLRLKMLAEFL 255 (337)
Q Consensus 230 ~~vl~l~YEDL~~d~~~~v~~I~~FL 255 (337)
-.|+-+.++|+..+|..++.+|.+.|
T Consensus 82 w~vlR~~~~dv~~~~~~~~~~I~~~l 107 (108)
T cd01038 82 FRVLRFWNNEVLRNIEAVLEAILAAL 107 (108)
T ss_pred CEEEEEEHHHHhhCHHHHHHHHHHHh
Confidence 37899999999999999999998765
No 25
>smart00874 B5 tRNA synthetase B5 domain. This domain is found in phenylalanine-tRNA synthetase beta subunits.
Probab=22.35 E-value=1.1e+02 Score=21.56 Aligned_cols=27 Identities=30% Similarity=0.554 Sum_probs=22.4
Q ss_pred HHHHHHHhCCCCChhhhhchHHHHHHHhcChH
Q 019700 248 LKMLAEFLGCPFSPAEEANGLVDDILKLCSFD 279 (337)
Q Consensus 248 v~~I~~FLg~~~~~~~~~~~~l~~iv~~~sf~ 279 (337)
..+|.+.||.+++.++ +.+++++..|+
T Consensus 8 ~~~i~~llG~~i~~~e-----i~~~L~~lg~~ 34 (71)
T smart00874 8 RERINRLLGLDLSAEE-----IEEILKRLGFE 34 (71)
T ss_pred HHHHHHHHCCCCCHHH-----HHHHHHHCCCe
Confidence 4678899999999988 88888877665
No 26
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=21.78 E-value=86 Score=30.22 Aligned_cols=28 Identities=18% Similarity=0.166 Sum_probs=20.8
Q ss_pred CCCEEEEcCCCCcch-HHHHHHHHHHhcc
Q 019700 72 DSDILLVTTPKAGTT-WLKAITFAIVNRL 99 (337)
Q Consensus 72 ~~DV~ivsyPKSGTT-W~~~il~~i~~~~ 99 (337)
.--|.|+++|.||-| ++..++..+..++
T Consensus 205 ~~~~~~~g~~~~GKtt~~~~l~~~l~~~g 233 (366)
T PRK14489 205 PPLLGVVGYSGTGKTTLLEKLIPELIARG 233 (366)
T ss_pred ccEEEEecCCCCCHHHHHHHHHHHHHHcC
Confidence 446889999999955 5577777776543
No 27
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=21.53 E-value=73 Score=25.39 Aligned_cols=19 Identities=32% Similarity=0.506 Sum_probs=15.4
Q ss_pred EEEEcCCCCc-chHHHHHHH
Q 019700 75 ILLVTTPKAG-TTWLKAITF 93 (337)
Q Consensus 75 V~ivsyPKSG-TTW~~~il~ 93 (337)
|++++.|=|| |||.+++..
T Consensus 2 ii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 7899999999 677777664
No 28
>PRK06851 hypothetical protein; Provisional
Probab=21.02 E-value=2.4e+02 Score=27.33 Aligned_cols=80 Identities=19% Similarity=0.108 Sum_probs=49.4
Q ss_pred cccchhhhHHHHHHHhcCCCC-C-CC-ccccceeeCcEEecccchHhHHHhhhccccCCCCEEEEcCCCCc-chHHHHHH
Q 019700 17 YLQEDELTQECRELISSLPAE-T-GW-VVDHLYQYQGFWHTSRELQGVLACQKHFQAQDSDILLVTTPKAG-TTWLKAIT 92 (337)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~p~~-~-~~-~~~~~~~~~g~~~p~~~~~~~~~~~~~f~~r~~DV~ivsyPKSG-TTW~~~il 92 (337)
.+|++++.+-..++++.+... . .+ .......|-|-.-|.++..-.-... +.-+..++|.+-|-+| ||.+..|+
T Consensus 159 ~md~~k~~~~~~~l~~~l~~~~~~~~~~g~~rh~F~ga~Tp~G~~s~~~~l~---~~~~~~~~i~G~pG~GKstl~~~i~ 235 (367)
T PRK06851 159 NMDFAKANELTDELIQELFKGAPGKISKGKVRHLFLGAITPKGAVDFVPSLT---EGVKNRYFLKGRPGTGKSTMLKKIA 235 (367)
T ss_pred hCCHHHHHHHHHHHHHHHhccCcccccCCceeeeeccccCCCcHHhhHHhHh---cccceEEEEeCCCCCcHHHHHHHHH
Confidence 467778777777777775543 2 11 1223334555555655442111111 3335568999999999 88999999
Q ss_pred HHHHhcc
Q 019700 93 FAIVNRL 99 (337)
Q Consensus 93 ~~i~~~~ 99 (337)
..+..+|
T Consensus 236 ~~a~~~G 242 (367)
T PRK06851 236 KAAEERG 242 (367)
T ss_pred HHHHhCC
Confidence 8887655
No 29
>TIGR03715 KxYKxGKxW KxYKxGKxW signal peptide. This model describes a novel form of signal peptide that occurs as an N-terminal domain with a recognizable motif, reminiscent of the YSIRK and PEP-CTERM forms of signal peptide. This domain tends to occur on long, low-complexity (usually Serine-rich and heavily glycosylated) proteins of the Firmicutes, and (as with YSIRK) the majority of these proteins have the LPXTG cell wall-anchoring motif at the C-terminus.
Probab=20.65 E-value=82 Score=18.41 Aligned_cols=15 Identities=27% Similarity=0.507 Sum_probs=11.7
Q ss_pred CCCcchHHHHHHHHH
Q 019700 81 PKAGTTWLKAITFAI 95 (337)
Q Consensus 81 PKSGTTW~~~il~~i 95 (337)
-|||-+|+..-+..+
T Consensus 7 yKsGK~Wv~a~~~~~ 21 (29)
T TIGR03715 7 YKSGKQWVFAAITTL 21 (29)
T ss_pred EecccHHHHHHHHHH
Confidence 489999998876544
No 30
>cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase. Glutamyl-tRNA synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Glu or Gln, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea, cellular organelles, and some bacteria lack GlnRS. In these cases, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. The discriminating form of GluRS differs from GlnRS and the non-discriminating form of GluRS in their C-terminal anti-codon bind
Probab=20.53 E-value=1.6e+02 Score=26.64 Aligned_cols=53 Identities=15% Similarity=0.169 Sum_probs=36.4
Q ss_pred cccccCChHHHHHHHHHHhccCCCeEEEEechhhhcC--h---HHHHHHHHHHhCCCCCh
Q 019700 207 GVSLYGPFWDHILGYWKASMEKPDRVFFLKYEELKEQ--P---SLRLKMLAEFLGCPFSP 261 (337)
Q Consensus 207 g~~~~g~~~~hv~~~w~~~~~~~~~vl~l~YEDL~~d--~---~~~v~~I~~FLg~~~~~ 261 (337)
|.+..|.-...+.+|..++.. .--++||.||.-.. . ...|.+-+++||+.+++
T Consensus 12 G~lHlG~~r~al~n~l~Ar~~--~G~~iLRieDtD~~R~~~~~~~~I~~dL~wlGl~wd~ 69 (230)
T cd00418 12 GYLHIGHARTALFNFAFARKY--GGKFILRIEDTDPERSRPEYVESILEDLKWLGLDWDE 69 (230)
T ss_pred CcccHHHHHHHHHHHHHHHHc--CCeEEEEeCcCCCCCCChHHHHHHHHHHHHcCCCCCC
Confidence 344556666677787777533 35678999998542 2 45666667899999986
No 31
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=20.53 E-value=1.1e+02 Score=27.64 Aligned_cols=25 Identities=28% Similarity=0.499 Sum_probs=18.6
Q ss_pred EEEEcCCCCc-chHHHHHHHHHHhcc
Q 019700 75 ILLVTTPKAG-TTWLKAITFAIVNRL 99 (337)
Q Consensus 75 V~ivsyPKSG-TTW~~~il~~i~~~~ 99 (337)
|++.+||-|| ||.-++++..|-.+.
T Consensus 4 iIlTGyPgsGKTtfakeLak~L~~~i 29 (261)
T COG4088 4 IILTGYPGSGKTTFAKELAKELRQEI 29 (261)
T ss_pred EEEecCCCCCchHHHHHHHHHHHHhh
Confidence 6789999999 567777776665443
No 32
>PF02969 TAF: TATA box binding protein associated factor (TAF); InterPro: IPR004823 The TATA box binding protein associated factor (TAF) is part of the transcription initiation factor TFIID multimeric protein complex. TFIID plays a central role in mediating promoter responses to various activators and repressors. It binds tightly to TAFII-250 and directly interacts with TAFII-40. TFIID is composed of TATA binding protein (TBP)and a number of TBP-associated factors (TAFS). TAF proteins adopt a histone-like fold.; GO: 0006352 transcription initiation, DNA-dependent, 0005634 nucleus; PDB: 1TAF_B.
Probab=20.48 E-value=1e+02 Score=22.01 Aligned_cols=30 Identities=20% Similarity=0.247 Sum_probs=19.6
Q ss_pred hHHHHHHHHHHhCC-CCChhhhhchHHHHHHHhcCh
Q 019700 244 PSLRLKMLAEFLGC-PFSPAEEANGLVDDILKLCSF 278 (337)
Q Consensus 244 ~~~~v~~I~~FLg~-~~~~~~~~~~~l~~iv~~~sf 278 (337)
+.+.|+.+++=+|+ +++++. ...+.+..++
T Consensus 5 ~~esvk~iAes~Gi~~l~de~-----a~~La~dvey 35 (66)
T PF02969_consen 5 SQESVKDIAESLGISNLSDEA-----AKALAEDVEY 35 (66)
T ss_dssp -HHHHHHHHHHTT---B-HHH-----HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCCCCHHH-----HHHHHHHHHH
Confidence 67889999999999 677776 5555555554
No 33
>PRK09767 hypothetical protein; Provisional
Probab=20.30 E-value=1.4e+02 Score=23.97 Aligned_cols=30 Identities=13% Similarity=0.019 Sum_probs=26.3
Q ss_pred CeEEEEechhhhcChHHHHHHHHHHhCCCC
Q 019700 230 DRVFFLKYEELKEQPSLRLKMLAEFLGCPF 259 (337)
Q Consensus 230 ~~vl~l~YEDL~~d~~~~v~~I~~FLg~~~ 259 (337)
=.|+-+..+|+..|+.+++..|...|+...
T Consensus 85 ~~VlRf~n~dV~~~~~~Vl~~I~~~l~~~~ 114 (117)
T PRK09767 85 WTVLRFWNNEIDCNEEAVLEIILQELNRRS 114 (117)
T ss_pred CEEEEEEHHHHHhCHHHHHHHHHHHHhccC
Confidence 378889999999999999999999987643
Done!