Query 019701
Match_columns 337
No_of_seqs 121 out of 143
Neff 3.0
Searched_HMMs 29240
Date Mon Mar 25 05:49:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019701.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019701hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2p5d_A UPF0310 protein mjecl36 98.2 5E-06 1.7E-10 70.8 8.5 122 208-331 8-147 (147)
2 2hd9_A UPF0310 protein PH1033; 98.2 9.6E-06 3.3E-10 68.9 10.2 113 211-330 8-142 (145)
3 2ar1_A Hypothetical protein; s 94.2 0.093 3.2E-06 46.7 6.8 107 226-334 46-168 (172)
4 2eve_A Hypothetical protein ps 93.9 0.14 4.9E-06 45.0 7.3 104 226-331 28-148 (157)
5 1zce_A Hypothetical protein AT 93.0 0.15 5.3E-06 44.6 5.9 98 226-332 31-137 (155)
6 2gbs_A Hypothetical protein RP 87.8 0.85 2.9E-05 39.5 5.7 99 226-334 30-137 (145)
7 3eop_A Thymocyte nuclear prote 82.7 0.97 3.3E-05 40.5 3.8 98 232-331 46-166 (176)
8 2yud_A YTH domain-containing p 68.8 10 0.00035 33.5 6.4 129 206-336 28-167 (180)
9 2yu6_A YTH domain-containing p 40.2 85 0.0029 26.4 7.1 119 207-334 11-140 (141)
10 3kw0_A Cysteine peptidase; str 21.6 78 0.0027 27.8 3.9 62 257-318 81-148 (214)
11 4hik_A Protection of telomeres 20.2 98 0.0034 26.3 4.1 61 230-309 74-135 (143)
No 1
>2p5d_A UPF0310 protein mjecl36; NPPSFA, national project on protein structural and functional analyses; 1.70A {Methanocaldococcus jannaschii}
Probab=98.18 E-value=5e-06 Score=70.77 Aligned_cols=122 Identities=17% Similarity=0.334 Sum_probs=83.1
Q ss_pred EEeecCcChHHhhhhhhccCCccchhhhhccCCCCcEEEE-----ecc--CceEeeeeeeccCCCCccCCcCccCC-CCC
Q 019701 208 IFVCNNDTMAENLKRQLFGLPPRYRDSVRAITPGLPLFLY-----NYS--THQLHGIFEAASFGGTNIDPTAWEDK-KCP 279 (337)
Q Consensus 208 IFmCN~~T~~ECf~r~LFGLP~~h~d~VrkIKPGmpLFLY-----nys--~RkLhGIFEAaS~Gg~NIdP~AF~s~-~~~ 279 (337)
|+..+.++-+.|.+..+||++.+++.+++.+||||.+|.| .-. ...+.||.|.++++. .|+++|-.. +..
T Consensus 8 L~~se~~~~~~~~~~g~wGVn~~arn~lr~Mk~GD~~~fY~~~~~hs~~~~~~ivGi~eV~~e~y--~D~t~~dp~~~y~ 85 (147)
T 2p5d_A 8 LCITNEDNWKVIKEKKIWGVAERYKNTINKVKVGDKLIIYEIQRSGKDYKPPYIRGVYEVVSEVY--KDSSKIFKPTPRN 85 (147)
T ss_dssp EEEECHHHHHHHHHHCEEEECGGGHHHHTTCCTTCEEEEEECCBCSTTCBCCEEEEEEEECSCCE--ECCCCCSCCBTTB
T ss_pred eeecCHHHHHHHHHcCeeecCHHHHHHHHhCCCCCEEEEEEecccCCCCCCCEEEEEEEEecccc--cCCcccCcCccCc
Confidence 4555556677788889999999999999999999999999 444 359999999999665 466665432 222
Q ss_pred CCCcCCceEEEEEeeec-cCCCcccchhhhh------ccCCCCcc---ccCCHHHHHHHHHh
Q 019701 280 GESRFPAQVRVVTRKIC-EPLEEDSFRPILH------HYDGPKFR---LELNVPEAISLLDI 331 (337)
Q Consensus 280 g~s~FPAQVRf~i~k~C-~PL~EseFKpiI~------~Y~~~KF~---fELs~~QV~~Ll~L 331 (337)
++.++|..|.|+....+ .|++=.+.|+.++ .....-++ ++++.+|-..+++|
T Consensus 86 ~~~~~w~~VdV~~v~~~~~~v~L~~Lk~~L~fi~~~~~~~~~L~r~gv~pV~~~~~~~I~~~ 147 (147)
T 2p5d_A 86 PNEKFPYRVKLKEIKVFEPPINFKELIPKLKFITNKKRWSGHLMGKAMREIPEEDYKLIVGN 147 (147)
T ss_dssp TTCCCCEEEEEEEEEEEEEEEEHHHHGGGCTTCCCSSSCCC--CCCSEEEECHHHHHHHHTC
T ss_pred CCCCCceEEEEEEEeecCCccCHHHHHhhhhhcccchhhHHHHhcCCceECCHHHHHHHHhC
Confidence 46789999999977664 4444333332221 12221123 47788877776653
No 2
>2hd9_A UPF0310 protein PH1033; pyrococcus horikoshii OT3, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: CIT; 1.35A {Pyrococcus horikoshii} SCOP: b.122.1.8 PDB: 1wmm_A* 2zbn_A
Probab=98.18 E-value=9.6e-06 Score=68.89 Aligned_cols=113 Identities=19% Similarity=0.372 Sum_probs=78.9
Q ss_pred ecCcChHHhhhhhhccCCccchhhhhccCCCCcEEEEeccC---------ceEeeeeeeccCCCCccCCcCc-cCCCCCC
Q 019701 211 CNNDTMAENLKRQLFGLPPRYRDSVRAITPGLPLFLYNYST---------HQLHGIFEAASFGGTNIDPTAW-EDKKCPG 280 (337)
Q Consensus 211 CN~~T~~ECf~r~LFGLP~~h~d~VrkIKPGmpLFLYnys~---------RkLhGIFEAaS~Gg~NIdP~AF-~s~~~~g 280 (337)
.+.+.-+.+.+..++|++.+++.+++++||||.+|.|.-.. +.+.||+|+++++. .+|++| .+.+..
T Consensus 8 ss~d~~~~~~~~g~~GVn~~arn~lr~mk~GD~~~fYhs~~~~~~~~~~~~~ivGi~eV~~e~y--~D~t~~~~~~~~~- 84 (145)
T 2hd9_A 8 TNRENWEVIKRHNVWGVPKKHKNTLSRVKPGDKLVIYVRQEKDKEGNLLEPKIVGIYEVTSEPY--VDFSRIFKPHRGG- 84 (145)
T ss_dssp ECHHHHHHHHHHCEEEECGGGHHHHTTCCTTCEEEEEECCEECTTCCEECCEEEEEEEECSCCE--ECCCCCSCCTTSS-
T ss_pred CCHHHHHHHHHcCccccCHHHHHHHHhCCCCCEEEEEEccccccCCCCCCceEEEEEEEcCCcE--eCCCccCCCcccc-
Confidence 33344455666788999989999999999999999999876 69999999999665 344444 333222
Q ss_pred CCcCCceEEEEEeeeccCCCcccchhhhhccC--------CCCc----cccCCHHHHHHHHH
Q 019701 281 ESRFPAQVRVVTRKICEPLEEDSFRPILHHYD--------GPKF----RLELNVPEAISLLD 330 (337)
Q Consensus 281 ~s~FPAQVRf~i~k~C~PL~EseFKpiI~~Y~--------~~KF----~fELs~~QV~~Ll~ 330 (337)
...+|.+|.++++.. .+..++++++.-. +-.| -++++.++-+.+++
T Consensus 85 ~~~~p~rv~v~~v~~----~~i~~~~l~~~l~fi~~k~~w~~~l~r~gv~pV~~~d~~~I~~ 142 (145)
T 2hd9_A 85 KETYPYRVKIKPIKI----GEINFKPLINDLKFIKNKKRWSMHFFGKAMRELPEEDYKLIEK 142 (145)
T ss_dssp CCCCCEEEEEEEEEE----EEEESGGGGGGCTTCCCSTTGGGGTTTCSEEEECHHHHHHHHH
T ss_pred cCCeeEEEeCEEEee----ccCcHHHHHhhhhhhcccccccceecccCceEcCHHHHHHHHH
Confidence 458999999988854 4455566554211 1122 34888888777664
No 3
>2ar1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium, SGPP, unknown F; 1.60A {Leishmania major} SCOP: b.122.1.8
Probab=94.25 E-value=0.093 Score=46.68 Aligned_cols=107 Identities=19% Similarity=0.205 Sum_probs=69.8
Q ss_pred cCCccc-hhhhhccCCCCcEEEEecc--CceEeeeeeeccCCCCccCCcCccCCCC-----C-CCCcCCceEEEEEeeec
Q 019701 226 GLPPRY-RDSVRAITPGLPLFLYNYS--THQLHGIFEAASFGGTNIDPTAWEDKKC-----P-GESRFPAQVRVVTRKIC 296 (337)
Q Consensus 226 GLP~~h-~d~VrkIKPGmpLFLYnys--~RkLhGIFEAaS~Gg~NIdP~AF~s~~~-----~-g~s~FPAQVRf~i~k~C 296 (337)
|+--.. +.+++.+++|+.+|+|.-. ...++||.|.++.+. .||.+|..... . .+.+-=..|.|+.+..+
T Consensus 46 GVRNyqARN~mr~Mk~GD~vfFYHS~c~~pgIvGi~eVv~e~y--pD~t~fdp~s~YyDpks~~~~prw~~VdV~~v~~~ 123 (172)
T 2ar1_A 46 GVRNYAARNNMRAMSVGDKVLFYHSNTKEPGVAGLAEVVRLAY--DDFTALDKTSEYFDPKATKEKNPWKMVDVKFVARW 123 (172)
T ss_dssp CCCCHHHHHHHHHCCTTCEEEEEECSSSSCEEEEEEEEEEEEE--ECGGGGCTTSTTCCTTCCSSCCCCEEEEEEEEEEE
T ss_pred CcCcHHHHHHHHhcCCCCEEEEEecCCCCCEEEEEEEEeeecc--CCcccccccCcccCcccCCCCCCeEEEEEEEeeec
Confidence 665433 6789999999999999988 679999999999766 57777753211 0 01111135666655444
Q ss_pred -cCCCcccchh--hhhc---cCCCCcc-ccCCHHHHHHHHHhhhh
Q 019701 297 -EPLEEDSFRP--ILHH---YDGPKFR-LELNVPEAISLLDIFEE 334 (337)
Q Consensus 297 -~PL~EseFKp--iI~~---Y~~~KF~-fELs~~QV~~Ll~LF~~ 334 (337)
.||+-++.|. .++. ...+.-. ..+|.+|-..|++|=.+
T Consensus 124 ~~pvtL~eLK~~~~L~~m~Lvr~~RLSV~PVt~~ew~~I~~l~~e 168 (172)
T 2ar1_A 124 DTVLTLHELKSRRELQKMALFTQRRLSVQPVSASEYAYILRMNEE 168 (172)
T ss_dssp EEEEEHHHHTTCGGGTTCHHHHCSSCSEEEECHHHHHHHHHHHHH
T ss_pred CCcccHHHHhcCcccccCeeeeccCCCceecCHHHHHHHHHhhhh
Confidence 5666665553 4432 1223333 48999999988887543
No 4
>2eve_A Hypothetical protein pspto5229; alpha-beta protein, structural genomics, PSI, protein struct initiative; HET: MPO; 1.60A {Pseudomonas syringae PV} SCOP: b.122.1.8 PDB: 2g2x_A
Probab=93.95 E-value=0.14 Score=44.97 Aligned_cols=104 Identities=18% Similarity=0.257 Sum_probs=68.4
Q ss_pred cCCccc-hhhhhccCCCCcEEEEecc--CceEeeeeeeccCCCCccCCcCccCCCC-----C-CCCcCCceEEEEEeeec
Q 019701 226 GLPPRY-RDSVRAITPGLPLFLYNYS--THQLHGIFEAASFGGTNIDPTAWEDKKC-----P-GESRFPAQVRVVTRKIC 296 (337)
Q Consensus 226 GLP~~h-~d~VrkIKPGmpLFLYnys--~RkLhGIFEAaS~Gg~NIdP~AF~s~~~-----~-g~s~FPAQVRf~i~k~C 296 (337)
|+--.. +.+++.+++|+.+|+|.-. ...+.||.|.++.+. .||++|..... . .+.+-=..|.|+.+..+
T Consensus 28 GVRNyqArN~mr~Mk~GD~~ffYHS~c~~pgIvGi~eVv~e~y--pD~t~fdp~s~YyDpks~~~~prw~~VdV~~v~~~ 105 (157)
T 2eve_A 28 GVRNYQARNFLRTMAEGDEFFFYHSSCPEPGIAGIGKIVKTAY--PDPTALDPDSHYHDAKATTEKNPWSALDIGFVDIF 105 (157)
T ss_dssp CCCCHHHHHHHHHCCTTCEEEEEECSSSSCEEEEEEEEEEEEE--ECGGGGCTTSTTCCTTCCSSCCCCEEEEEEEEEEE
T ss_pred CcccHHHHHHHHhcCCCCEEEEEecCCCCCEEEEEEEEeEccC--CCcccccccCcCcCcccCCCCCCEEEEEEEEeeec
Confidence 665333 6789999999999999887 679999999999766 67888753211 0 01111135666655444
Q ss_pred -cCCCcccchh--hhhc---cC-CCCcc-ccCCHHHHHHHHHh
Q 019701 297 -EPLEEDSFRP--ILHH---YD-GPKFR-LELNVPEAISLLDI 331 (337)
Q Consensus 297 -~PL~EseFKp--iI~~---Y~-~~KF~-fELs~~QV~~Ll~L 331 (337)
.||+-++.|. .++. .. ++.-. +.+|.+|-..+++|
T Consensus 106 ~~pv~L~elK~~~~L~~m~Lv~~g~RLSV~PVt~~ew~~I~~l 148 (157)
T 2eve_A 106 KNVLGLGYLKQQSQLEQLPLVQKGSRLSVMPVTAEQWAAILAL 148 (157)
T ss_dssp EEEEEHHHHHTCGGGTTCGGGSTTCCCSEEEECHHHHHHHHHH
T ss_pred CCccCHHHHhcCcccccCceeeccCCcCceecCHHHHHHHHHH
Confidence 5666666663 4542 22 23333 48999999888876
No 5
>1zce_A Hypothetical protein ATU2648; alpha-beta protein., structural genomics, PSI, protein struc initiative; 1.30A {Agrobacterium tumefaciens str} SCOP: b.122.1.8
Probab=92.99 E-value=0.15 Score=44.59 Aligned_cols=98 Identities=19% Similarity=0.217 Sum_probs=66.0
Q ss_pred cCCccc-hhhhhccCCCCcEEEEecc-CceEeeeeeeccCCCCccCCcCccCCCCCCCCcCCceEEEEEeeec-cCCCcc
Q 019701 226 GLPPRY-RDSVRAITPGLPLFLYNYS-THQLHGIFEAASFGGTNIDPTAWEDKKCPGESRFPAQVRVVTRKIC-EPLEED 302 (337)
Q Consensus 226 GLP~~h-~d~VrkIKPGmpLFLYnys-~RkLhGIFEAaS~Gg~NIdP~AF~s~~~~g~s~FPAQVRf~i~k~C-~PL~Es 302 (337)
|+--.. +.+++.+++|+.+|+|.-. .+.+.||.|.++++. .||.+|..+++ ..|.|+....+ .||+-+
T Consensus 31 GVRNyqArN~mr~Mk~GD~~fFYHS~~~~gIvGi~eVv~e~y--pD~t~~d~Prw-------~~VdV~~v~~~~~pvtL~ 101 (155)
T 1zce_A 31 GVRNYQARNNMRAMKIGDKGFFYHSNEGLDVVGIVEVCALSH--PDSTAEGDLKW-------DCVDIRAVCDMPQPVSLK 101 (155)
T ss_dssp CCCCHHHHHHHHTCCTTCEEEEEETTTTCEEEEEEEEEEEEE--ECTTSTTCSSC-------EEEEEEEEEEEEEEEEHH
T ss_pred CcccHHHHHHHHhccCCCEEEEEEeCCCCceEEEEEEeeecc--CCCCcCCCCCe-------EEEEEEEccccCCcccHH
Confidence 665443 6789999999999999877 337999999999876 47888763322 34555554443 566666
Q ss_pred cchh--hhhc---cCCCCc-cccCCHHHHHHHHHhh
Q 019701 303 SFRP--ILHH---YDGPKF-RLELNVPEAISLLDIF 332 (337)
Q Consensus 303 eFKp--iI~~---Y~~~KF-~fELs~~QV~~Ll~LF 332 (337)
+.|. .++. ...+.- -..+|.+|-..+++|=
T Consensus 102 eLK~~~~L~~m~Lvr~~RLSV~PVt~~ew~~I~~l~ 137 (155)
T 1zce_A 102 DVKANPKLEKMSLVTSMRLSVQPVTEEEYLEVCRMG 137 (155)
T ss_dssp HHHHCGGGTTCHHHHCSSCSEEEECHHHHHHHHHHT
T ss_pred HHhcCCCcccCeeeeccCCCceeeCHHHHHHHHHhh
Confidence 6663 4432 122333 3488999998888774
No 6
>2gbs_A Hypothetical protein RPA0253; alpha-beta, RPR3, NESG, structural genomics, COG294 protein structure initiative; NMR {Rhodopseudomonas palustris} SCOP: b.122.1.8
Probab=87.75 E-value=0.85 Score=39.48 Aligned_cols=99 Identities=17% Similarity=0.171 Sum_probs=64.0
Q ss_pred cCCccc-hhhhhccCCCCcEEEEecc-CceEeeeeeeccCCCCccCCcCccCCCCCCCCcCCceEEEEEeeec-cCCCcc
Q 019701 226 GLPPRY-RDSVRAITPGLPLFLYNYS-THQLHGIFEAASFGGTNIDPTAWEDKKCPGESRFPAQVRVVTRKIC-EPLEED 302 (337)
Q Consensus 226 GLP~~h-~d~VrkIKPGmpLFLYnys-~RkLhGIFEAaS~Gg~NIdP~AF~s~~~~g~s~FPAQVRf~i~k~C-~PL~Es 302 (337)
|+--.. +.+++.+++|+.+|+|.-. .+.+.||.|.++.+. .||.+ .++ ++ ..|.|+....+ .||+-+
T Consensus 30 GVRNyqArn~mr~Mk~GD~~ffYHS~~~~gIvGi~eVv~e~y--pD~t~--~~p-----rw-~~VdV~~v~~~~~pvtL~ 99 (145)
T 2gbs_A 30 GVRNHSAKLHMVAMRRGDRAFYYHSNEGKEIVGIAEIIREAY--PDPTD--ASG-----KF-VCVDIKADKPLKTPVTLA 99 (145)
T ss_dssp CCCCHHHHHHHHHCCTTCEEEEEETTTTCEEEEEEEEEEEEE--ECTTC--TTS-----CS-EEEEEEEEEEEEEEEEHH
T ss_pred CcccHHHHHHHHhcCCCCEEEEEEeCCCCceEEEEEEEEecc--CCCCC--CCC-----CE-EEEEEEEceecCCcccHH
Confidence 555433 6789999999999999877 337999999999865 24443 111 11 34666655444 567666
Q ss_pred cchh--hhhc---cCCCCc-cccCCHHHHHHHHHhhhh
Q 019701 303 SFRP--ILHH---YDGPKF-RLELNVPEAISLLDIFEE 334 (337)
Q Consensus 303 eFKp--iI~~---Y~~~KF-~fELs~~QV~~Ll~LF~~ 334 (337)
+.|. .++. ...+.- -..+|.+|-..+++|=..
T Consensus 100 elK~~~~L~~m~lvr~~RLSV~pVt~~ew~~I~~l~~~ 137 (145)
T 2gbs_A 100 AVKAEPRLADMALMKYSRLSVQPVTAEEWKLVCKMGGL 137 (145)
T ss_dssp HHHHCTTGGGSHHHHCTTCSSEEECHHHHHHHHHHTTC
T ss_pred HHhcCcCcccCeeeeccCCCceeeCHHHHHHHHHhhcc
Confidence 6663 4432 122333 348899999988887543
No 7
>3eop_A Thymocyte nuclear protein 1; unknown function, nucleus, phosphoprotein; 2.30A {Homo sapiens} SCOP: b.122.1.0
Probab=82.70 E-value=0.97 Score=40.45 Aligned_cols=98 Identities=16% Similarity=0.219 Sum_probs=60.0
Q ss_pred hhhhhccCCCCcEEEEecc--CceEeeeeeeccCCCCccCCcCccCCCC-----C-CCCcCCceEEEEEeeec-cCCCcc
Q 019701 232 RDSVRAITPGLPLFLYNYS--THQLHGIFEAASFGGTNIDPTAWEDKKC-----P-GESRFPAQVRVVTRKIC-EPLEED 302 (337)
Q Consensus 232 ~d~VrkIKPGmpLFLYnys--~RkLhGIFEAaS~Gg~NIdP~AF~s~~~-----~-g~s~FPAQVRf~i~k~C-~PL~Es 302 (337)
+.+++.+++|+..|+|.-. ..-+.||.|.++.+. .||+||..... + ...+-=.-|.|+.+..+ .||+-+
T Consensus 46 RN~mR~Mk~GD~~fFYHSnck~pgIvGi~eVv~e~y--pD~T~fDp~s~YyDpkS~~~~prW~~VdV~~v~~~~~~vtL~ 123 (176)
T 3eop_A 46 RNFLRAMKLGEEAFFYHSNCKEPGIAGLMKIVKEAY--PDHTQFEKNNPHYDPSSKEDNPKWSMVDVQFVRMMKRFIPLA 123 (176)
T ss_dssp HHHHHHCCTTCEEEEEECCSSSCEEEEEEEEEEEEE--ECGGGTCTTSTTCCTTCCTTSCSCEEEEEEEEEEEEEEEEHH
T ss_pred HHHHHhcCCCCEEEEEecCCCCCeEEEEEEEeeccc--cCCcccCCCCCCCCccCcCCCCCEEEEEEEEeeecCCcccHH
Confidence 5689999999999999987 569999999999876 67778764321 0 00111112444433333 356655
Q ss_pred cchhh----------hhc---cCCCCcc-ccCCHHHHHHHHHh
Q 019701 303 SFRPI----------LHH---YDGPKFR-LELNVPEAISLLDI 331 (337)
Q Consensus 303 eFKpi----------I~~---Y~~~KF~-fELs~~QV~~Ll~L 331 (337)
+.|.. ++. ...+.-. ..+|.+|-..+++|
T Consensus 124 eLK~~~~~~~~~~~~L~~m~Lvr~~RLSV~PVt~~ew~~I~~l 166 (176)
T 3eop_A 124 ELKSYHQAHKATGGPLKNMVLFTRQRLSIQPLTQEEFDFVLSL 166 (176)
T ss_dssp HHHHHHHHHHHHTCTTSSCHHHHCTTCSEEEECHHHHHHHHHG
T ss_pred HHhcCcccccccccccccCceeccCccCceecCHHHHHHHHHH
Confidence 55532 221 1122222 37888888777776
No 8
>2yud_A YTH domain-containing protein 1; structure genomics, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=68.77 E-value=10 Score=33.47 Aligned_cols=129 Identities=11% Similarity=0.116 Sum_probs=74.8
Q ss_pred eEEEee-cCcChHHhhhhhhccCCccchh-hhhccCCCCcEEEE--eccCceEeeeeeeccCCCCccCCcCccCCCCCCC
Q 019701 206 GYIFVC-NNDTMAENLKRQLFGLPPRYRD-SVRAITPGLPLFLY--NYSTHQLHGIFEAASFGGTNIDPTAWEDKKCPGE 281 (337)
Q Consensus 206 G~IFmC-N~~T~~ECf~r~LFGLP~~h~d-~VrkIKPGmpLFLY--nys~RkLhGIFEAaS~Gg~NIdP~AF~s~~~~g~ 281 (337)
=||.-| +.+-...+.++.+|...+..-. .-++-+-+.++||+ .-..++..|+=|-+|.-..+-.+.-|..+..+..
T Consensus 28 fFIIKS~s~~ni~~Sik~gvWatt~~n~~kL~~Af~~~~~V~L~FSVn~Sg~F~G~A~M~s~~~~~~~~~~W~~~~~~~~ 107 (180)
T 2yud_A 28 FFLIKSNNHENVSLAKAKGVWSTLPVNEKKLNLAFRSARSVILIFSVRESGKFQGFARLSSESHHGGSPIHWVLPAGMSA 107 (180)
T ss_dssp EEEEEESCHHHHHHHHHHTEECCCHHHHHHHHHHHHHSSCEEEEEEETTTSEEEEEEEEEEEEECSSCCCCCCCCSSCCG
T ss_pred EEEEEeCCHHHHHHHHHcCEeecccccHHHHHHHHhhCCeEEEEEEeCCCCcEEEEEEEccCCCCCCCCccccccCccch
Confidence 355555 3366777889999998865432 22222333445544 4456799999999996544444555653221111
Q ss_pred CcCCceEEEEEeeecc-CCCcccchhhhhccCCC------CccccCCHHHHHHHHHhhhhcC
Q 019701 282 SRFPAQVRVVTRKICE-PLEEDSFRPILHHYDGP------KFRLELNVPEAISLLDIFEEQD 336 (337)
Q Consensus 282 s~FPAQVRf~i~k~C~-PL~EseFKpiI~~Y~~~------KF~fELs~~QV~~Ll~LF~~~~ 336 (337)
.++. -.|.|.|.|. .||=..+++|+-.+... +=..||...+-++|+.||....
T Consensus 108 ~~~~--g~F~V~Wi~~~dvPf~~~~hl~n~~NenkpV~~sRDgqEI~~~~G~~L~~lf~~~~ 167 (180)
T 2yud_A 108 KMLG--GVFKIDWICRRELPFTKSAHLTNPWNEHKPVKIGRDGQEIELECGTQLCLLFPPDE 167 (180)
T ss_dssp GGGC--SEEEEEEEECSCEEHHHHTTCCBTTTTSBCTTSCCTTEEECHHHHHHHHHHSCCCS
T ss_pred hhcC--CceEEEEEEeecCCchhhhhccccccCCCeeeeCCCCEEcCHHHHHHHHHhcccCc
Confidence 2222 2444444443 24445556665433322 2247999999999999997653
No 9
>2yu6_A YTH domain-containing protein 2; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=40.22 E-value=85 Score=26.41 Aligned_cols=119 Identities=14% Similarity=0.169 Sum_probs=74.7
Q ss_pred EEEeec-CcChHHhhhhhhccCCccchh-hhhccCCCCcEEEE--eccCceEeeeeeeccCCCCccCCcCccCCCCCCCC
Q 019701 207 YIFVCN-NDTMAENLKRQLFGLPPRYRD-SVRAITPGLPLFLY--NYSTHQLHGIFEAASFGGTNIDPTAWEDKKCPGES 282 (337)
Q Consensus 207 ~IFmCN-~~T~~ECf~r~LFGLP~~h~d-~VrkIKPGmpLFLY--nys~RkLhGIFEAaS~Gg~NIdP~AF~s~~~~g~s 282 (337)
||.-|. .+-...+.++.+|...+..-. .-++-+-+.++||+ .-..++..|+=|-+|.... ..+.-|...+.
T Consensus 11 FIiKS~s~~ni~~S~k~gvW~tt~~~~~~L~~Af~~~~~V~L~FSvn~Sg~F~G~A~M~s~~~~-~~~~~W~~~~~---- 85 (141)
T 2yu6_A 11 FIMKSSNLRNLEISQQKGIWSTTPSNERKLNRAFWESSIVYLVFSVQGSGHFQGFSRMSSEIGR-EKSQDWGSAGL---- 85 (141)
T ss_dssp EEEEESSSHHHHHHHHTCEEECCTTSHHHHHHHHHHSSCEEEEEEESSSSEECEEEEECSCSSS-CCCCCCSCSCC----
T ss_pred EEEEeCCHHHHHHHHHcCEeeccCccHHHHHHHHhcCCcEEEEEEECCCCeEEEEEEEcccCCC-CCCcccccccc----
Confidence 555553 355778899999998876544 33333444466665 3356799999999997664 55556654322
Q ss_pred cCCceEEEEEeeecc-CCCcccchhhhhccCCC------CccccCCHHHHHHHHHhhhh
Q 019701 283 RFPAQVRVVTRKICE-PLEEDSFRPILHHYDGP------KFRLELNVPEAISLLDIFEE 334 (337)
Q Consensus 283 ~FPAQVRf~i~k~C~-PL~EseFKpiI~~Y~~~------KF~fELs~~QV~~Ll~LF~~ 334 (337)
.-.|.|.|.|. .||=..+++|...+... .=-.||...+-.+|+.||..
T Consensus 86 ----~g~F~V~Wi~~~~vpf~~~~hl~n~~N~nk~V~~~RDgqEi~~~~G~~l~~if~~ 140 (141)
T 2yu6_A 86 ----GGVFKVEWIRKESLPFQFAHHLLNPWNDNKKVQISRDGQELEPQVGEQLLQLWER 140 (141)
T ss_dssp ----CCEEEEEEEECSCEEHHHHTSCEETTSTTEETTCCCTTEEECTTHHHHHHGGGGT
T ss_pred ----CCcEEEEEEEeecCChHHhhhcccccCCCCeEEeCCCCEEcCHHHHHHHHHHHhh
Confidence 22444555443 24445556655433321 22469999999999999974
No 10
>3kw0_A Cysteine peptidase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: LYS; 2.50A {Bacillus cereus}
Probab=21.63 E-value=78 Score=27.82 Aligned_cols=62 Identities=11% Similarity=0.233 Sum_probs=32.3
Q ss_pred eeeeccCCCCccCCc-CccCCCCCCCCcCCceEEEEEeeecc--CCCcccchhhhh---ccCCCCccc
Q 019701 257 IFEAASFGGTNIDPT-AWEDKKCPGESRFPAQVRVVTRKICE--PLEEDSFRPILH---HYDGPKFRL 318 (337)
Q Consensus 257 IFEAaS~Gg~NIdP~-AF~s~~~~g~s~FPAQVRf~i~k~C~--PL~EseFKpiI~---~Y~~~KF~f 318 (337)
|+||++.++..+.|- .|-........+|-.+|.+...+.+. ||++++...+++ .+.+..|.+
T Consensus 81 vieA~~~~GV~~~~L~~fl~~~~~~~~~y~~~i~V~Rl~~~~~v~lt~~~~~~l~~~a~~~lGkpYd~ 148 (214)
T 3kw0_A 81 IMESVEDDGVRIVPLEHYIKNYENSNNRYNGSLFIARHELLQNVNDDSEMIRNLIKVGFSLLNSGYDK 148 (214)
T ss_dssp EEEEETTTEEEEEETHHHHHCGGGSSSCCSEEEEEEEEGGGTTSCTTSHHHHHHHHHHHHHCCSCCCH
T ss_pred EEEecCCCCEEEecHHHHHHHhhcccccccCceEEEEeccccccCCCHHHHHHHHHHHHHhcCCCCCc
Confidence 789987777777663 34421000001344555554443332 567666565664 455665543
No 11
>4hik_A Protection of telomeres protein 1; specificity, plasticity, promiscuity, OB-fold, ssDNA binding stranded telomeric DNA; HET: DNA; 1.64A {Schizosaccharomyces pombe} PDB: 4hid_A* 4him_A* 4hio_A* 4hj5_A* 4hj7_A* 4hj8_A* 4hj9_A* 4hja_A*
Probab=20.23 E-value=98 Score=26.29 Aligned_cols=61 Identities=16% Similarity=0.136 Sum_probs=35.5
Q ss_pred cchhhhhc-cCCCCcEEEEeccCceEeeeeeeccCCCCccCCcCccCCCCCCCCcCCceEEEEEeeeccCCCcccchhhh
Q 019701 230 RYRDSVRA-ITPGLPLFLYNYSTHQLHGIFEAASFGGTNIDPTAWEDKKCPGESRFPAQVRVVTRKICEPLEEDSFRPIL 308 (337)
Q Consensus 230 ~h~d~Vrk-IKPGmpLFLYnys~RkLhGIFEAaS~Gg~NIdP~AF~s~~~~g~s~FPAQVRf~i~k~C~PL~EseFKpiI 308 (337)
.|..+++. |++|+.+.|+|...+. .+.| .++-..- +.+.||-.|.|.+. .|- ....|.++
T Consensus 74 ~ha~~ar~~lk~Gd~v~L~Nv~iK~-------~~~g--~LEG~l~------~dr~~~~ki~v~~l---d~~-~~~lk~ll 134 (143)
T 4hik_A 74 EHDFYCRNYIKEGDYVVMKNVRTKI-------DHLG--YLECILH------GDSAKRYNMSIEKV---DSE-EPELNEIK 134 (143)
T ss_dssp HHHHHHTTTCCTTCEEEEEEEEEEE-------CTTS--CEEEEEC------CCTTCCSCCEEEEE---CTT-CGGGHHHH
T ss_pred cHHHHHHhhCCCCCEEEEEeEEEee-------cCCc--eEEEEEc------CCCCCCCcceEEEc---CCC-CHHHHHHH
Confidence 57777655 9999999999976431 1112 2222222 23468877777764 232 25556666
Q ss_pred h
Q 019701 309 H 309 (337)
Q Consensus 309 ~ 309 (337)
+
T Consensus 135 ~ 135 (143)
T 4hik_A 135 S 135 (143)
T ss_dssp H
T ss_pred H
Confidence 3
Done!