Query 019702
Match_columns 337
No_of_seqs 396 out of 4162
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 03:52:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019702.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019702hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1126 GlnQ ABC-type polar am 100.0 1.3E-37 2.7E-42 272.7 12.5 168 97-269 5-228 (240)
2 COG3854 SpoIIIAA ncharacterize 100.0 1.5E-35 3.2E-40 261.2 19.8 278 2-284 1-301 (308)
3 COG1120 FepC ABC-type cobalami 100.0 6.5E-36 1.4E-40 272.6 13.7 167 97-267 5-229 (258)
4 COG1127 Ttg2A ABC-type transpo 100.0 1.2E-33 2.5E-38 251.3 14.0 175 97-276 11-245 (263)
5 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 9.3E-34 2E-38 257.3 12.9 166 97-267 7-228 (254)
6 COG4555 NatA ABC-type Na+ tran 100.0 4E-34 8.7E-39 247.8 8.8 167 97-267 4-223 (245)
7 COG1125 OpuBA ABC-type proline 100.0 1.3E-33 2.7E-38 252.6 12.2 172 97-273 4-232 (309)
8 COG3842 PotA ABC-type spermidi 100.0 3.3E-33 7.2E-38 265.2 11.2 172 97-277 8-238 (352)
9 COG1135 AbcC ABC-type metal io 100.0 1.1E-32 2.4E-37 252.9 13.2 176 97-275 4-240 (339)
10 COG3839 MalK ABC-type sugar tr 100.0 2.5E-32 5.4E-37 257.9 13.2 174 97-279 6-237 (338)
11 COG3638 ABC-type phosphate/pho 100.0 4.5E-32 9.8E-37 240.6 12.3 167 97-266 6-237 (258)
12 COG1122 CbiO ABC-type cobalt t 100.0 2.9E-32 6.2E-37 247.6 11.2 167 97-267 6-229 (235)
13 COG1124 DppF ABC-type dipeptid 100.0 7.3E-32 1.6E-36 240.6 13.5 165 97-267 6-232 (252)
14 COG1116 TauB ABC-type nitrate/ 100.0 7.8E-32 1.7E-36 242.1 12.7 152 97-252 6-206 (248)
15 PRK13537 nodulation ABC transp 100.0 1E-31 2.2E-36 254.4 12.3 167 97-267 10-228 (306)
16 COG1118 CysA ABC-type sulfate/ 100.0 7.7E-32 1.7E-36 246.9 10.4 169 97-270 5-231 (345)
17 COG1131 CcmA ABC-type multidru 100.0 1.7E-31 3.7E-36 251.1 11.8 167 97-267 7-227 (293)
18 COG2805 PilT Tfp pilus assembl 100.0 1.9E-30 4.1E-35 237.0 17.5 221 15-246 5-243 (353)
19 COG4152 ABC-type uncharacteriz 100.0 9.9E-32 2.1E-36 239.1 8.1 167 97-268 5-221 (300)
20 PRK13536 nodulation factor exp 100.0 3.3E-31 7.1E-36 254.0 12.4 167 97-267 44-262 (340)
21 PRK11650 ugpC glycerol-3-phosp 100.0 7.5E-31 1.6E-35 253.0 13.0 169 97-269 6-227 (356)
22 TIGR03258 PhnT 2-aminoethylpho 100.0 8.4E-31 1.8E-35 252.9 12.4 168 97-268 8-230 (362)
23 PRK11432 fbpC ferric transport 100.0 9.8E-31 2.1E-35 251.6 12.7 169 97-269 9-229 (351)
24 TIGR02314 ABC_MetN D-methionin 100.0 1.2E-30 2.5E-35 250.1 12.1 170 97-268 4-232 (343)
25 TIGR03265 PhnT2 putative 2-ami 100.0 1.2E-30 2.7E-35 251.2 12.3 169 97-269 7-227 (353)
26 COG4559 ABC-type hemin transpo 100.0 2.3E-30 5E-35 226.1 12.4 166 97-267 4-231 (259)
27 TIGR01288 nodI ATP-binding ABC 100.0 2E-30 4.3E-35 245.3 12.5 167 97-267 7-225 (303)
28 COG1117 PstB ABC-type phosphat 100.0 3.4E-30 7.3E-35 225.4 12.8 170 97-271 10-242 (253)
29 cd03261 ABC_Org_Solvent_Resist 100.0 2.1E-30 4.6E-35 236.2 11.8 165 97-266 3-226 (235)
30 PRK09536 btuD corrinoid ABC tr 100.0 2.3E-30 5E-35 252.5 12.7 167 97-267 6-229 (402)
31 PRK13651 cobalt transporter AT 100.0 9E-30 1.9E-34 240.8 16.2 168 97-267 5-255 (305)
32 PRK11000 maltose/maltodextrin 100.0 3E-30 6.6E-35 250.0 13.1 169 97-269 6-226 (369)
33 PRK10851 sulfate/thiosulfate t 100.0 4.1E-30 8.9E-35 247.6 13.2 168 97-268 5-228 (353)
34 PRK09452 potA putrescine/sperm 100.0 4.5E-30 9.9E-35 248.8 13.0 169 97-269 17-237 (375)
35 cd03265 ABC_DrrA DrrA is the A 100.0 5.4E-30 1.2E-34 231.2 12.3 164 97-264 3-219 (220)
36 COG0411 LivG ABC-type branched 100.0 8.8E-31 1.9E-35 233.8 6.9 167 97-268 7-241 (250)
37 COG1136 SalX ABC-type antimicr 100.0 4.2E-30 9.1E-35 230.2 10.3 156 97-255 4-220 (226)
38 PRK11153 metN DL-methionine tr 100.0 7.1E-30 1.5E-34 245.3 12.5 169 97-267 4-231 (343)
39 cd03218 ABC_YhbG The ABC trans 100.0 9.8E-30 2.1E-34 231.2 12.7 165 97-266 3-222 (232)
40 cd03216 ABC_Carb_Monos_I This 100.0 7E-30 1.5E-34 220.4 10.6 151 97-257 3-162 (163)
41 cd03259 ABC_Carb_Solutes_like 100.0 7.7E-30 1.7E-34 229.0 11.3 159 97-259 3-213 (213)
42 COG0444 DppD ABC-type dipeptid 100.0 1.9E-29 4E-34 234.0 14.1 173 97-271 4-248 (316)
43 COG2884 FtsE Predicted ATPase 100.0 4.8E-30 1E-34 220.6 9.4 160 97-259 4-219 (223)
44 cd03296 ABC_CysA_sulfate_impor 100.0 1.5E-29 3.2E-34 231.3 13.2 166 97-266 5-226 (239)
45 PRK11607 potG putrescine trans 100.0 9.4E-30 2E-34 246.9 12.6 169 97-269 22-242 (377)
46 TIGR01188 drrA daunorubicin re 100.0 6.6E-30 1.4E-34 241.6 10.6 160 103-267 2-214 (302)
47 COG0410 LivF ABC-type branched 100.0 1.3E-29 2.8E-34 224.6 11.7 167 97-267 6-227 (237)
48 TIGR03522 GldA_ABC_ATP gliding 100.0 1.1E-29 2.4E-34 239.9 11.9 166 97-267 5-222 (301)
49 cd03224 ABC_TM1139_LivF_branch 100.0 1.3E-29 2.8E-34 228.7 11.8 164 97-265 3-220 (222)
50 COG1123 ATPase components of v 100.0 1.6E-29 3.5E-34 249.8 13.2 172 97-271 283-524 (539)
51 PRK13643 cbiO cobalt transport 100.0 3.6E-29 7.9E-34 235.0 14.9 169 97-267 4-234 (288)
52 cd03258 ABC_MetN_methionine_tr 100.0 1.5E-29 3.2E-34 230.3 11.7 167 97-266 4-230 (233)
53 cd03219 ABC_Mj1267_LivG_branch 100.0 1.7E-29 3.7E-34 230.2 11.8 166 97-266 3-232 (236)
54 PRK13638 cbiO cobalt transport 100.0 2.4E-29 5.2E-34 234.2 12.6 166 97-267 4-226 (271)
55 PRK13641 cbiO cobalt transport 100.0 6.8E-29 1.5E-33 233.1 15.6 169 97-267 5-235 (287)
56 PRK11264 putative amino-acid A 100.0 2.9E-29 6.4E-34 230.6 12.8 166 97-267 6-234 (250)
57 cd03293 ABC_NrtD_SsuB_transpor 100.0 2.1E-29 4.5E-34 227.4 11.2 163 97-261 3-218 (220)
58 cd03256 ABC_PhnC_transporter A 100.0 3.2E-29 6.9E-34 229.0 12.5 164 97-265 3-233 (241)
59 PRK11614 livF leucine/isoleuci 100.0 3.2E-29 7E-34 228.7 12.3 165 97-266 8-226 (237)
60 cd03268 ABC_BcrA_bacitracin_re 100.0 2.2E-29 4.8E-34 225.2 11.0 158 97-259 3-208 (208)
61 PRK13637 cbiO cobalt transport 100.0 3.8E-29 8.3E-34 234.7 12.7 169 97-267 5-235 (287)
62 cd03301 ABC_MalK_N The N-termi 100.0 3.7E-29 7.9E-34 224.5 11.9 159 97-259 3-213 (213)
63 PRK13634 cbiO cobalt transport 100.0 5E-29 1.1E-33 234.3 13.3 169 97-267 5-236 (290)
64 TIGR00960 3a0501s02 Type II (G 100.0 1.8E-29 4E-34 227.0 9.8 156 97-255 4-216 (216)
65 PRK14250 phosphate ABC transpo 100.0 5E-29 1.1E-33 228.2 12.6 166 97-267 6-222 (241)
66 PRK13631 cbiO cobalt transport 100.0 8.8E-29 1.9E-33 235.5 14.7 168 97-267 24-266 (320)
67 PRK09493 glnQ glutamine ABC tr 100.0 5.7E-29 1.2E-33 227.4 12.9 166 97-267 4-226 (240)
68 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 5.5E-29 1.2E-33 227.1 12.6 165 97-267 4-222 (236)
69 cd03263 ABC_subfamily_A The AB 100.0 3.9E-29 8.4E-34 225.5 11.4 164 97-264 3-219 (220)
70 PRK10895 lipopolysaccharide AB 100.0 4.7E-29 1E-33 228.2 12.1 166 97-266 6-226 (241)
71 PRK13647 cbiO cobalt transport 100.0 4.5E-29 9.8E-34 232.8 12.1 165 97-264 7-225 (274)
72 PRK11831 putative ABC transpor 100.0 4.3E-29 9.3E-34 232.3 11.9 165 97-266 10-233 (269)
73 cd03294 ABC_Pro_Gly_Bertaine T 100.0 2.3E-29 5E-34 234.1 10.0 166 97-267 27-251 (269)
74 cd03266 ABC_NatA_sodium_export 100.0 4.3E-29 9.3E-34 224.9 11.5 160 97-259 4-218 (218)
75 TIGR03410 urea_trans_UrtE urea 100.0 5.3E-29 1.2E-33 226.1 12.1 163 97-264 3-219 (230)
76 TIGR01186 proV glycine betaine 100.0 2.6E-29 5.5E-34 242.3 10.6 162 103-268 2-221 (363)
77 cd03226 ABC_cobalt_CbiO_domain 100.0 3E-29 6.4E-34 224.0 10.1 156 97-256 2-205 (205)
78 cd03230 ABC_DR_subfamily_A Thi 100.0 4.1E-29 8.8E-34 217.6 10.6 152 97-254 3-172 (173)
79 PRK13548 hmuV hemin importer A 100.0 7.5E-29 1.6E-33 229.3 13.0 166 97-266 5-230 (258)
80 PRK10619 histidine/lysine/argi 100.0 6.5E-29 1.4E-33 229.5 12.5 166 97-267 8-242 (257)
81 PRK11247 ssuB aliphatic sulfon 100.0 5.8E-29 1.3E-33 229.9 11.9 162 97-262 15-219 (257)
82 TIGR02315 ABC_phnC phosphonate 100.0 6.9E-29 1.5E-33 227.1 12.1 164 97-265 4-234 (243)
83 PRK13646 cbiO cobalt transport 100.0 8.8E-29 1.9E-33 232.2 12.7 169 97-267 5-236 (286)
84 PRK15079 oligopeptide ABC tran 100.0 7.3E-29 1.6E-33 237.0 12.3 170 97-268 11-253 (331)
85 PRK13649 cbiO cobalt transport 100.0 2.2E-28 4.7E-33 228.7 15.2 168 97-267 5-235 (280)
86 cd03269 ABC_putative_ATPase Th 100.0 6.7E-29 1.4E-33 222.5 10.9 159 97-259 3-210 (210)
87 TIGR03740 galliderm_ABC gallid 100.0 9.2E-29 2E-33 223.6 11.8 163 97-263 3-210 (223)
88 cd03260 ABC_PstB_phosphate_tra 100.0 5.8E-29 1.2E-33 225.5 10.2 162 97-263 3-226 (227)
89 TIGR03005 ectoine_ehuA ectoine 100.0 1.2E-28 2.6E-33 227.0 12.5 166 97-267 3-237 (252)
90 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 5.3E-29 1.2E-33 224.2 9.9 155 97-255 3-218 (218)
91 PRK11022 dppD dipeptide transp 100.0 1E-28 2.2E-33 235.8 12.2 169 97-268 6-245 (326)
92 PRK13650 cbiO cobalt transport 100.0 9.4E-29 2E-33 231.2 11.7 167 97-267 7-230 (279)
93 PRK11308 dppF dipeptide transp 100.0 1.1E-28 2.4E-33 235.5 12.3 170 97-268 8-246 (327)
94 PRK13636 cbiO cobalt transport 100.0 1.3E-28 2.8E-33 230.7 12.5 168 97-267 8-232 (283)
95 cd03295 ABC_OpuCA_Osmoprotecti 100.0 1.3E-28 2.9E-33 225.3 12.2 165 97-266 3-225 (242)
96 PRK11231 fecE iron-dicitrate t 100.0 1.5E-28 3.3E-33 226.7 12.7 166 97-266 5-227 (255)
97 PRK11124 artP arginine transpo 100.0 1.5E-28 3.3E-33 224.9 12.5 164 97-265 5-229 (242)
98 TIGR03873 F420-0_ABC_ATP propo 100.0 1.5E-28 3.2E-33 227.0 12.5 166 97-266 4-226 (256)
99 PRK11144 modC molybdate transp 100.0 1.4E-28 3E-33 237.2 12.8 164 99-269 5-221 (352)
100 cd03246 ABCC_Protease_Secretio 100.0 1.1E-28 2.4E-33 214.9 10.8 152 97-255 3-173 (173)
101 COG1137 YhbG ABC-type (unclass 100.0 4.1E-30 9E-35 222.7 1.8 166 97-267 7-229 (243)
102 PRK09473 oppD oligopeptide tra 100.0 1.2E-28 2.6E-33 235.5 12.0 170 97-268 15-253 (330)
103 PRK13640 cbiO cobalt transport 100.0 3.5E-28 7.5E-33 227.7 14.7 168 97-267 8-233 (282)
104 PRK10575 iron-hydroxamate tran 100.0 1.6E-28 3.6E-33 227.8 12.4 166 97-266 14-237 (265)
105 PRK10070 glycine betaine trans 100.0 1.3E-28 2.9E-33 240.0 12.3 156 111-268 43-256 (400)
106 PRK13652 cbiO cobalt transport 100.0 1.9E-28 4.1E-33 228.9 12.8 167 97-267 6-228 (277)
107 cd03257 ABC_NikE_OppD_transpor 100.0 1.6E-28 3.4E-33 222.5 11.7 161 97-259 4-228 (228)
108 cd03229 ABC_Class3 This class 100.0 1.7E-28 3.6E-33 214.7 11.3 153 97-254 3-178 (178)
109 PRK11300 livG leucine/isoleuci 100.0 1.9E-28 4.1E-33 225.9 12.2 166 97-266 8-243 (255)
110 cd03235 ABC_Metallic_Cations A 100.0 1.4E-28 3E-33 220.9 10.9 157 97-258 2-212 (213)
111 cd03252 ABCC_Hemolysin The ABC 100.0 2.3E-28 5E-33 222.9 12.5 167 97-267 3-226 (237)
112 PRK10253 iron-enterobactin tra 100.0 2.8E-28 6E-33 226.4 13.1 166 97-266 10-233 (265)
113 TIGR02673 FtsE cell division A 100.0 1.3E-28 2.8E-33 221.1 10.5 153 97-254 4-214 (214)
114 PRK15093 antimicrobial peptide 100.0 2.6E-28 5.6E-33 233.4 13.1 170 97-268 6-250 (330)
115 COG1123 ATPase components of v 100.0 1.7E-28 3.8E-33 242.5 12.2 172 97-271 8-249 (539)
116 COG4175 ProV ABC-type proline/ 100.0 1.1E-28 2.4E-33 226.7 10.0 160 112-274 44-262 (386)
117 TIGR00972 3a0107s01c2 phosphat 100.0 2.8E-28 6E-33 223.9 12.7 166 97-267 4-233 (247)
118 COG4598 HisP ABC-type histidin 100.0 9.4E-29 2E-33 211.0 8.7 168 97-269 9-244 (256)
119 PRK13644 cbiO cobalt transport 100.0 2.2E-28 4.7E-33 228.2 12.0 166 97-267 4-225 (274)
120 cd03213 ABCG_EPDR ABCG transpo 100.0 2.8E-28 6.2E-33 216.2 12.1 160 97-259 6-194 (194)
121 cd03247 ABCC_cytochrome_bd The 100.0 2.5E-28 5.4E-33 213.5 11.5 157 97-259 3-178 (178)
122 cd03225 ABC_cobalt_CbiO_domain 100.0 1.2E-28 2.6E-33 220.9 9.8 155 97-254 2-211 (211)
123 PRK10771 thiQ thiamine transpo 100.0 5.1E-28 1.1E-32 220.1 13.7 165 97-267 4-220 (232)
124 PRK11248 tauB taurine transpor 100.0 2.5E-28 5.4E-33 225.5 11.8 161 97-262 4-216 (255)
125 cd03300 ABC_PotA_N PotA is an 100.0 4E-28 8.7E-33 220.9 13.0 166 97-267 3-221 (232)
126 COG3840 ThiQ ABC-type thiamine 100.0 6.8E-28 1.5E-32 206.1 13.3 164 97-267 4-220 (231)
127 PRK13639 cbiO cobalt transport 100.0 2.7E-28 5.9E-33 227.6 11.9 167 97-267 4-227 (275)
128 PRK13645 cbiO cobalt transport 100.0 3E-28 6.5E-33 228.9 12.2 168 97-267 9-241 (289)
129 PRK13635 cbiO cobalt transport 100.0 2.8E-28 6.2E-33 228.0 12.0 167 97-267 8-230 (279)
130 TIGR03411 urea_trans_UrtD urea 100.0 3.1E-28 6.8E-33 222.7 12.0 164 97-266 5-231 (242)
131 TIGR02142 modC_ABC molybdenum 100.0 3.1E-28 6.7E-33 235.0 12.4 163 99-268 4-223 (354)
132 cd03214 ABC_Iron-Siderophores_ 100.0 2.1E-28 4.5E-33 214.5 10.2 157 97-258 2-179 (180)
133 PRK10908 cell division protein 100.0 2.6E-28 5.6E-33 220.6 11.0 156 97-257 4-217 (222)
134 PRK09544 znuC high-affinity zi 100.0 3.6E-28 7.7E-33 224.0 12.1 165 97-266 7-209 (251)
135 cd03262 ABC_HisP_GlnQ_permease 100.0 2.4E-28 5.3E-33 219.1 10.6 154 97-255 3-213 (213)
136 cd03217 ABC_FeS_Assembly ABC-t 100.0 5.2E-28 1.1E-32 215.5 12.6 161 97-262 3-190 (200)
137 COG4604 CeuD ABC-type enteroch 100.0 1.4E-28 3E-33 212.7 8.6 165 97-266 4-225 (252)
138 TIGR02769 nickel_nikE nickel i 100.0 3.8E-28 8.3E-33 225.4 12.2 168 97-266 5-240 (265)
139 PRK09984 phosphonate/organopho 100.0 4.2E-28 9.1E-33 224.6 12.4 164 97-264 7-240 (262)
140 cd03264 ABC_drug_resistance_li 100.0 2.6E-28 5.7E-33 218.8 10.6 156 97-259 3-211 (211)
141 TIGR01978 sufC FeS assembly AT 100.0 5E-28 1.1E-32 221.3 12.7 164 97-265 3-233 (243)
142 PRK15439 autoinducer 2 ABC tra 100.0 3.2E-28 6.9E-33 245.6 12.4 165 97-266 14-229 (510)
143 PRK14268 phosphate ABC transpo 100.0 3.7E-28 7.9E-33 224.6 11.6 165 97-267 15-243 (258)
144 PRK15112 antimicrobial peptide 100.0 4.8E-28 1E-32 225.0 12.4 169 97-267 7-240 (267)
145 PRK14247 phosphate ABC transpo 100.0 5.5E-28 1.2E-32 222.3 12.6 166 97-267 6-235 (250)
146 PRK11701 phnK phosphonate C-P 100.0 6.4E-28 1.4E-32 223.0 13.0 166 97-267 9-242 (258)
147 TIGR02323 CP_lyasePhnK phospho 100.0 7.6E-28 1.7E-32 221.7 13.4 166 97-267 6-239 (253)
148 PRK14242 phosphate transporter 100.0 5.3E-28 1.2E-32 222.7 12.4 165 97-267 9-238 (253)
149 TIGR03415 ABC_choXWV_ATP choli 100.0 1.6E-28 3.4E-33 238.0 9.2 165 99-268 29-256 (382)
150 PRK14273 phosphate ABC transpo 100.0 5.8E-28 1.3E-32 222.7 12.5 166 97-267 10-239 (254)
151 cd03292 ABC_FtsE_transporter F 100.0 2.6E-28 5.7E-33 219.0 9.9 154 97-254 3-213 (214)
152 cd03298 ABC_ThiQ_thiamine_tran 100.0 6.7E-28 1.4E-32 216.1 12.3 157 97-259 3-211 (211)
153 PRK13648 cbiO cobalt transport 100.0 5.3E-28 1.2E-32 224.9 11.8 168 97-267 10-232 (269)
154 PRK11629 lolD lipoprotein tran 100.0 4.7E-28 1E-32 220.5 11.2 161 97-260 8-228 (233)
155 cd03215 ABC_Carb_Monos_II This 99.9 3.7E-28 8.1E-33 213.2 10.1 150 97-255 7-182 (182)
156 PRK13633 cobalt transporter AT 99.9 1E-27 2.3E-32 224.3 13.5 168 97-267 7-234 (280)
157 cd03232 ABC_PDR_domain2 The pl 99.9 6.9E-28 1.5E-32 213.3 11.6 160 97-259 6-192 (192)
158 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.9 6.9E-28 1.5E-32 203.9 11.0 138 97-254 3-144 (144)
159 PRK14267 phosphate ABC transpo 99.9 9.4E-28 2E-32 221.1 12.7 166 97-267 7-238 (253)
160 TIGR02211 LolD_lipo_ex lipopro 99.9 4.5E-28 9.7E-33 218.7 10.4 157 97-256 4-220 (221)
161 PRK10418 nikD nickel transport 99.9 1.1E-27 2.5E-32 220.9 12.8 166 97-267 7-231 (254)
162 COG4608 AppF ABC-type oligopep 99.9 6.1E-28 1.3E-32 219.5 10.8 168 97-271 7-204 (268)
163 cd03251 ABCC_MsbA MsbA is an e 99.9 1E-27 2.3E-32 218.1 12.4 166 97-267 3-226 (234)
164 TIGR00968 3a0106s01 sulfate AB 99.9 1.1E-27 2.4E-32 218.7 12.6 166 97-266 3-220 (237)
165 TIGR01277 thiQ thiamine ABC tr 99.9 9.9E-28 2.1E-32 215.5 12.0 158 97-260 3-212 (213)
166 PRK14248 phosphate ABC transpo 99.9 1.3E-27 2.8E-32 222.2 12.8 166 97-267 24-253 (268)
167 PRK15056 manganese/iron transp 99.9 1.7E-27 3.6E-32 222.0 13.5 165 97-266 9-230 (272)
168 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.9 1E-27 2.3E-32 218.8 11.7 165 97-266 3-226 (238)
169 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.9 4.3E-28 9.3E-33 219.7 8.8 158 97-259 25-224 (224)
170 PRK14256 phosphate ABC transpo 99.9 1.6E-27 3.5E-32 219.5 12.8 166 97-267 7-237 (252)
171 PRK10584 putative ABC transpor 99.9 1E-27 2.2E-32 217.5 11.3 159 97-258 9-227 (228)
172 PRK10744 pstB phosphate transp 99.9 1.7E-27 3.8E-32 220.3 13.0 166 97-267 16-245 (260)
173 PRK14272 phosphate ABC transpo 99.9 1.7E-27 3.7E-32 219.2 12.8 166 97-267 7-237 (252)
174 cd03299 ABC_ModC_like Archeal 99.9 1.7E-27 3.7E-32 217.3 12.6 165 97-266 3-219 (235)
175 PRK14249 phosphate ABC transpo 99.9 1.9E-27 4.1E-32 218.8 13.0 166 97-267 7-236 (251)
176 cd03222 ABC_RNaseL_inhibitor T 99.9 1.4E-27 3E-32 208.6 11.4 147 99-264 5-161 (177)
177 PRK13642 cbiO cobalt transport 99.9 2.6E-27 5.6E-32 221.3 13.9 167 97-267 7-230 (277)
178 cd03228 ABCC_MRP_Like The MRP 99.9 1E-27 2.2E-32 208.4 10.4 150 97-254 3-171 (171)
179 cd03254 ABCC_Glucan_exporter_l 99.9 1.4E-27 3E-32 216.6 11.7 164 97-266 5-226 (229)
180 PRK09700 D-allose transporter 99.9 8.2E-28 1.8E-32 242.6 11.2 166 97-266 8-234 (510)
181 PRK14274 phosphate ABC transpo 99.9 1.4E-27 3E-32 220.8 11.7 166 97-267 15-244 (259)
182 cd03297 ABC_ModC_molybdenum_tr 99.9 1.3E-27 2.8E-32 214.9 11.2 153 99-259 5-214 (214)
183 PRK10938 putative molybdenum t 99.9 2.2E-27 4.9E-32 238.3 13.9 165 97-266 6-224 (490)
184 PRK13632 cbiO cobalt transport 99.9 1.4E-27 3E-32 222.4 11.5 168 97-267 10-232 (271)
185 PRK14270 phosphate ABC transpo 99.9 2.5E-27 5.4E-32 218.1 12.9 165 97-267 7-236 (251)
186 PRK10762 D-ribose transporter 99.9 9E-28 1.9E-32 241.8 10.7 165 97-265 7-229 (501)
187 PRK13549 xylose transporter AT 99.9 8.8E-28 1.9E-32 242.1 10.7 164 97-265 8-231 (506)
188 PRK14240 phosphate transporter 99.9 2.3E-27 4.9E-32 218.2 12.4 166 97-267 6-235 (250)
189 PRK13547 hmuV hemin importer A 99.9 2E-27 4.4E-32 221.4 12.2 166 97-266 4-244 (272)
190 PRK14239 phosphate transporter 99.9 2.5E-27 5.4E-32 218.0 12.5 166 97-267 8-237 (252)
191 PRK14235 phosphate transporter 99.9 2.3E-27 5E-32 220.4 12.2 165 97-267 22-252 (267)
192 PRK14269 phosphate ABC transpo 99.9 2.7E-27 5.8E-32 217.3 12.4 166 97-267 5-231 (246)
193 PRK14259 phosphate ABC transpo 99.9 2.6E-27 5.5E-32 220.4 12.3 165 97-267 16-254 (269)
194 PRK14245 phosphate ABC transpo 99.9 2E-27 4.3E-32 218.6 11.5 166 97-267 6-235 (250)
195 cd03253 ABCC_ATM1_transporter 99.9 2.3E-27 4.9E-32 216.2 11.7 164 97-266 3-224 (236)
196 PRK14241 phosphate transporter 99.9 3.1E-27 6.8E-32 218.3 12.5 166 97-267 7-243 (258)
197 PRK10419 nikE nickel transport 99.9 3.3E-27 7.2E-32 219.5 12.7 167 97-266 6-241 (268)
198 PRK10982 galactose/methyl gala 99.9 1.6E-27 3.5E-32 239.4 11.3 164 98-265 2-222 (491)
199 PRK14262 phosphate ABC transpo 99.9 3.4E-27 7.3E-32 217.0 12.3 164 97-266 6-234 (250)
200 PRK14265 phosphate ABC transpo 99.9 3E-27 6.4E-32 220.6 12.0 166 97-267 23-259 (274)
201 PRK14246 phosphate ABC transpo 99.9 3.5E-27 7.7E-32 218.1 12.4 166 97-267 13-242 (257)
202 cd03223 ABCD_peroxisomal_ALDP 99.9 4E-27 8.6E-32 203.9 11.9 149 97-252 3-162 (166)
203 cd03369 ABCC_NFT1 Domain 2 of 99.9 3.9E-27 8.4E-32 210.7 12.1 161 97-261 9-207 (207)
204 COG2274 SunT ABC-type bacterio 99.9 2.9E-27 6.2E-32 244.0 12.7 168 97-267 474-697 (709)
205 TIGR03269 met_CoM_red_A2 methy 99.9 3.5E-27 7.5E-32 238.6 13.0 166 97-267 3-259 (520)
206 PRK14258 phosphate ABC transpo 99.9 5.2E-27 1.1E-31 217.3 12.7 167 97-267 10-246 (261)
207 cd03233 ABC_PDR_domain1 The pl 99.9 4.3E-27 9.3E-32 209.9 11.7 160 97-259 6-202 (202)
208 PRK14255 phosphate ABC transpo 99.9 5.4E-27 1.2E-31 215.9 12.6 166 97-267 8-237 (252)
209 cd03234 ABCG_White The White s 99.9 4.5E-27 9.8E-32 213.1 11.8 162 96-259 5-226 (226)
210 PRK14238 phosphate transporter 99.9 4.7E-27 1E-31 218.9 12.2 165 97-267 27-256 (271)
211 PRK14253 phosphate ABC transpo 99.9 3.9E-27 8.4E-32 216.5 11.5 165 97-266 6-233 (249)
212 PRK09580 sufC cysteine desulfu 99.9 6.5E-27 1.4E-31 214.7 12.8 163 97-264 4-233 (248)
213 PRK10261 glutathione transport 99.9 4E-27 8.8E-32 242.6 12.7 169 97-267 316-554 (623)
214 PRK14257 phosphate ABC transpo 99.9 4.2E-27 9.2E-32 224.7 11.9 169 97-268 83-315 (329)
215 cd03245 ABCC_bacteriocin_expor 99.9 4.6E-27 9.9E-32 211.9 11.4 159 97-259 5-220 (220)
216 PRK14251 phosphate ABC transpo 99.9 6.4E-27 1.4E-31 215.3 12.4 165 97-267 7-236 (251)
217 PRK14236 phosphate transporter 99.9 5.1E-27 1.1E-31 218.7 11.8 164 97-266 28-256 (272)
218 PRK14237 phosphate transporter 99.9 6.3E-27 1.4E-31 217.5 11.9 165 97-267 23-252 (267)
219 PRK14271 phosphate ABC transpo 99.9 6.3E-27 1.4E-31 218.6 11.8 166 97-267 24-252 (276)
220 PRK15134 microcin C ABC transp 99.9 5.1E-27 1.1E-31 237.8 12.1 169 97-267 8-247 (529)
221 PRK13546 teichoic acids export 99.9 9.1E-27 2E-31 216.1 12.7 155 110-267 38-233 (264)
222 TIGR02770 nickel_nikD nickel i 99.9 5.9E-27 1.3E-31 212.9 11.2 154 112-267 2-216 (230)
223 PRK13545 tagH teichoic acids e 99.9 1E-26 2.3E-31 230.7 13.7 169 97-268 24-234 (549)
224 PRK14244 phosphate ABC transpo 99.9 9E-27 1.9E-31 214.4 12.1 165 97-267 8-238 (251)
225 PRK14261 phosphate ABC transpo 99.9 9E-27 1.9E-31 214.6 12.1 166 97-267 9-238 (253)
226 PRK14275 phosphate ABC transpo 99.9 9.6E-27 2.1E-31 218.4 12.3 165 97-267 42-271 (286)
227 PRK14260 phosphate ABC transpo 99.9 9.8E-27 2.1E-31 215.2 12.2 166 97-267 10-244 (259)
228 PRK10261 glutathione transport 99.9 4.1E-27 8.9E-32 242.6 10.7 168 97-267 15-259 (623)
229 CHL00131 ycf16 sulfate ABC tra 99.9 1.2E-26 2.6E-31 213.5 12.6 162 97-263 10-238 (252)
230 PRK14243 phosphate transporter 99.9 1.1E-26 2.4E-31 215.6 12.3 165 97-267 13-249 (264)
231 PRK15064 ABC transporter ATP-b 99.9 1.2E-26 2.6E-31 235.1 13.3 166 97-266 4-242 (530)
232 cd03244 ABCC_MRP_domain2 Domai 99.9 1E-26 2.2E-31 209.8 11.5 160 97-260 5-220 (221)
233 PRK14254 phosphate ABC transpo 99.9 1.4E-26 2.9E-31 217.3 12.6 165 97-266 42-269 (285)
234 COG4586 ABC-type uncharacteriz 99.9 6E-27 1.3E-31 211.5 9.7 155 110-267 38-247 (325)
235 cd03289 ABCC_CFTR2 The CFTR su 99.9 1.1E-26 2.4E-31 216.6 11.5 165 97-267 5-226 (275)
236 TIGR02633 xylG D-xylose ABC tr 99.9 7.4E-27 1.6E-31 235.1 11.1 164 97-264 4-228 (500)
237 TIGR03796 NHPM_micro_ABC1 NHPM 99.9 1.2E-26 2.6E-31 242.7 13.1 168 97-267 480-701 (710)
238 TIGR01184 ntrCD nitrate transp 99.9 5.6E-27 1.2E-31 213.2 9.2 149 113-264 2-202 (230)
239 cd03288 ABCC_SUR2 The SUR doma 99.9 2E-26 4.3E-31 213.0 12.9 167 97-267 22-244 (257)
240 PRK11288 araG L-arabinose tran 99.9 1E-26 2.3E-31 234.1 11.6 161 97-261 7-224 (501)
241 TIGR03608 L_ocin_972_ABC putat 99.9 8.6E-27 1.9E-31 208.0 9.5 146 97-246 1-204 (206)
242 PRK14252 phosphate ABC transpo 99.9 2.1E-26 4.6E-31 213.7 12.2 165 97-266 19-249 (265)
243 PRK14263 phosphate ABC transpo 99.9 1.8E-26 3.8E-31 213.9 11.7 166 97-267 11-246 (261)
244 PRK14264 phosphate ABC transpo 99.9 3.3E-26 7.2E-31 216.6 13.0 166 97-267 48-290 (305)
245 PRK10247 putative ABC transpor 99.9 1.1E-26 2.4E-31 210.6 9.3 158 97-260 10-221 (225)
246 cd03267 ABC_NatA_like Similar 99.9 1.4E-26 3.1E-31 211.3 9.8 154 102-259 29-236 (236)
247 TIGR03269 met_CoM_red_A2 methy 99.9 2.4E-26 5.2E-31 232.4 12.5 167 97-266 282-517 (520)
248 PRK11819 putative ABC transpor 99.9 4.1E-26 8.9E-31 232.5 14.0 166 97-266 9-250 (556)
249 TIGR03797 NHPM_micro_ABC2 NHPM 99.9 2.8E-26 6.1E-31 239.1 12.9 168 97-267 454-674 (686)
250 PRK13543 cytochrome c biogenes 99.9 2E-26 4.3E-31 207.3 10.2 148 97-246 14-208 (214)
251 PRK03695 vitamin B12-transport 99.9 1.6E-26 3.5E-31 212.5 9.8 160 97-266 3-222 (248)
252 cd03250 ABCC_MRP_domain1 Domai 99.9 2.4E-26 5.3E-31 205.0 10.7 155 97-254 3-204 (204)
253 PRK14266 phosphate ABC transpo 99.9 4.1E-26 8.8E-31 209.8 12.0 165 97-267 6-235 (250)
254 TIGR02858 spore_III_AA stage I 99.9 6.8E-25 1.5E-29 203.3 20.2 217 29-253 1-247 (270)
255 cd03231 ABC_CcmA_heme_exporter 99.9 4.2E-26 9.1E-31 203.3 11.7 147 97-246 3-196 (201)
256 TIGR01257 rim_protein retinal- 99.9 3E-26 6.6E-31 255.6 12.9 168 97-267 1940-2160(2272)
257 COG4161 ArtP ABC-type arginine 99.9 4.9E-26 1.1E-30 191.4 10.7 163 97-264 5-228 (242)
258 PRK15134 microcin C ABC transp 99.9 2.8E-26 6E-31 232.5 11.2 167 97-267 278-516 (529)
259 TIGR03719 ABC_ABC_ChvD ATP-bin 99.9 7.8E-26 1.7E-30 230.2 14.2 166 97-266 7-248 (552)
260 PRK13538 cytochrome c biogenes 99.9 4.2E-26 9.1E-31 203.7 10.6 147 97-246 4-200 (204)
261 TIGR02324 CP_lyasePhnL phospho 99.9 6.6E-26 1.4E-30 205.0 11.5 149 97-246 4-220 (224)
262 COG4525 TauB ABC-type taurine 99.9 7.4E-26 1.6E-30 195.6 11.0 163 97-262 6-220 (259)
263 COG1134 TagH ABC-type polysacc 99.9 7.7E-26 1.7E-30 202.3 11.5 157 110-269 41-239 (249)
264 cd03291 ABCC_CFTR1 The CFTR su 99.9 1.8E-25 4E-30 209.1 14.5 164 97-267 42-248 (282)
265 TIGR02982 heterocyst_DevA ABC 99.9 4.4E-26 9.5E-31 205.8 10.0 155 97-255 4-219 (220)
266 cd00267 ABC_ATPase ABC (ATP-bi 99.9 7.8E-26 1.7E-30 193.7 11.0 147 97-253 2-156 (157)
267 PRK11176 lipid transporter ATP 99.9 7E-26 1.5E-30 231.9 12.7 167 97-267 344-568 (582)
268 PRK15064 ABC transporter ATP-b 99.9 1.2E-25 2.6E-30 227.9 13.9 166 97-266 322-525 (530)
269 PRK10636 putative ABC transpor 99.9 8.3E-26 1.8E-30 233.3 12.9 165 97-265 315-516 (638)
270 cd03248 ABCC_TAP TAP, the Tran 99.9 5.3E-26 1.2E-30 205.9 9.9 154 97-254 14-225 (226)
271 PRK13549 xylose transporter AT 99.9 3.6E-26 7.9E-31 230.4 9.7 165 97-264 262-492 (506)
272 COG4148 ModC ABC-type molybdat 99.9 6.2E-26 1.3E-30 205.5 10.1 152 114-267 16-219 (352)
273 TIGR01842 type_I_sec_PrtD type 99.9 1.2E-25 2.6E-30 228.6 13.4 167 97-266 319-542 (544)
274 TIGR03375 type_I_sec_LssB type 99.9 9.3E-26 2E-30 235.5 12.8 167 97-267 466-689 (694)
275 COG4172 ABC-type uncharacteriz 99.9 1.8E-25 3.9E-30 211.2 13.3 158 110-271 301-521 (534)
276 TIGR03771 anch_rpt_ABC anchore 99.9 1.7E-25 3.6E-30 202.6 11.8 148 117-267 1-202 (223)
277 cd03290 ABCC_SUR1_N The SUR do 99.9 1.6E-25 3.5E-30 201.8 11.2 152 97-253 3-217 (218)
278 KOG0055 Multidrug/pheromone ex 99.9 9.3E-26 2E-30 238.0 10.9 167 97-267 353-577 (1228)
279 COG1119 ModF ABC-type molybden 99.9 1.3E-25 2.8E-30 200.8 9.8 159 97-260 34-256 (257)
280 PRK11174 cysteine/glutathione 99.9 2E-25 4.3E-30 228.9 12.6 165 97-267 352-573 (588)
281 PRK09700 D-allose transporter 99.9 1.2E-25 2.6E-30 226.9 10.5 159 97-261 268-493 (510)
282 COG1129 MglA ABC-type sugar tr 99.9 1.4E-25 3E-30 220.5 10.6 160 97-261 11-229 (500)
283 COG4107 PhnK ABC-type phosphon 99.9 1.2E-25 2.6E-30 191.2 8.7 168 97-269 9-244 (258)
284 COG4181 Predicted ABC-type tra 99.9 1.5E-25 3.4E-30 189.9 9.2 156 99-257 11-226 (228)
285 PLN03211 ABC transporter G-25; 99.9 1.9E-25 4E-30 230.9 11.8 166 97-266 71-296 (659)
286 PRK15177 Vi polysaccharide exp 99.9 3.6E-25 7.7E-30 199.2 12.1 152 112-266 3-192 (213)
287 TIGR00958 3a01208 Conjugate Tr 99.9 2.2E-25 4.7E-30 233.1 12.3 168 97-267 481-703 (711)
288 PRK10790 putative multidrug tr 99.9 2.8E-25 6E-30 228.0 12.8 166 97-267 343-564 (592)
289 COG4988 CydD ABC-type transpor 99.9 1.9E-25 4.2E-30 220.4 10.9 164 98-267 324-544 (559)
290 KOG0058 Peptide exporter, ABC 99.9 2.6E-25 5.7E-30 223.5 12.0 168 97-268 468-693 (716)
291 cd03237 ABC_RNaseL_inhibitor_d 99.9 2.6E-25 5.5E-30 204.4 11.0 148 116-265 19-206 (246)
292 PRK11160 cysteine/glutathione 99.9 2.7E-25 5.9E-30 227.3 12.4 167 97-267 341-563 (574)
293 PRK13540 cytochrome c biogenes 99.9 3.8E-25 8.1E-30 196.9 11.6 144 97-244 4-195 (200)
294 TIGR01257 rim_protein retinal- 99.9 2.4E-25 5.3E-30 248.5 12.5 167 97-267 931-1150(2272)
295 PRK10636 putative ABC transpor 99.9 3.4E-25 7.5E-30 228.7 12.8 164 97-265 4-235 (638)
296 TIGR02633 xylG D-xylose ABC tr 99.9 1.6E-25 3.5E-30 225.4 10.2 163 97-262 260-488 (500)
297 COG4172 ABC-type uncharacteriz 99.9 4.5E-25 9.8E-30 208.5 12.4 174 97-272 9-253 (534)
298 PRK10789 putative multidrug tr 99.9 3.7E-25 7.9E-30 226.1 12.7 167 97-267 316-539 (569)
299 COG0488 Uup ATPase components 99.9 9.3E-25 2E-29 218.9 15.3 165 97-266 6-240 (530)
300 PRK13539 cytochrome c biogenes 99.9 2.9E-25 6.2E-30 198.8 10.4 145 97-246 5-196 (207)
301 TIGR01189 ccmA heme ABC export 99.9 4.1E-25 8.9E-30 196.3 11.2 138 97-237 3-189 (198)
302 TIGR01193 bacteriocin_ABC ABC- 99.9 3.2E-25 7E-30 231.9 12.0 167 97-267 476-698 (708)
303 TIGR01846 type_I_sec_HlyB type 99.9 3.9E-25 8.5E-30 230.8 12.4 166 97-267 458-681 (694)
304 PRK13409 putative ATPase RIL; 99.9 2.9E-25 6.4E-30 226.8 10.9 158 97-260 343-536 (590)
305 cd03238 ABC_UvrA The excision 99.9 2.4E-25 5.2E-30 194.3 8.8 133 110-253 9-164 (176)
306 PRK11147 ABC transporter ATPas 99.9 7.6E-25 1.6E-29 226.3 14.0 165 97-266 6-243 (635)
307 TIGR01192 chvA glucan exporter 99.9 5.2E-25 1.1E-29 225.6 12.4 166 97-267 337-559 (585)
308 COG4987 CydC ABC-type transpor 99.9 4.4E-25 9.6E-30 215.2 11.2 166 97-267 339-562 (573)
309 PRK13657 cyclic beta-1,2-gluca 99.9 5.8E-25 1.3E-29 225.5 12.7 166 97-266 337-558 (588)
310 COG4618 ArpD ABC-type protease 99.9 3.4E-25 7.5E-30 214.4 9.6 167 97-267 337-561 (580)
311 COG1132 MdlB ABC-type multidru 99.9 7.4E-25 1.6E-29 223.8 12.1 164 97-267 331-553 (567)
312 PRK11288 araG L-arabinose tran 99.9 3.2E-25 6.9E-30 223.3 9.2 152 111-265 268-484 (501)
313 TIGR02203 MsbA_lipidA lipid A 99.9 8.3E-25 1.8E-29 223.4 12.3 167 97-267 333-557 (571)
314 PRK15439 autoinducer 2 ABC tra 99.9 3.3E-25 7.2E-30 223.7 9.2 154 111-266 278-492 (510)
315 PLN03073 ABC transporter F fam 99.9 1.3E-24 2.8E-29 226.1 13.7 165 97-264 511-712 (718)
316 TIGR03719 ABC_ABC_ChvD ATP-bin 99.9 1.8E-24 4E-29 220.2 14.1 166 97-266 325-531 (552)
317 PRK11819 putative ABC transpor 99.9 2.2E-24 4.7E-29 219.8 14.4 167 97-267 327-534 (556)
318 PRK10982 galactose/methyl gala 99.9 6E-25 1.3E-29 220.8 10.0 159 97-262 253-476 (491)
319 KOG0057 Mitochondrial Fe/S clu 99.9 1.4E-24 3.1E-29 211.9 11.9 166 97-266 354-574 (591)
320 TIGR01187 potA spermidine/putr 99.9 7.4E-25 1.6E-29 209.2 9.6 140 127-268 1-192 (325)
321 cd03236 ABC_RNaseL_inhibitor_d 99.9 8.2E-25 1.8E-29 202.0 9.2 160 99-264 5-228 (255)
322 PRK11147 ABC transporter ATPas 99.9 1.9E-24 4.2E-29 223.3 12.8 164 97-264 322-526 (635)
323 COG4167 SapF ABC-type antimicr 99.9 1.5E-24 3.3E-29 185.8 9.8 163 110-275 27-248 (267)
324 PRK10762 D-ribose transporter 99.9 6.3E-25 1.4E-29 221.2 8.8 153 111-265 267-483 (501)
325 COG5008 PilU Tfp pilus assembl 99.9 1E-23 2.2E-28 189.7 15.3 213 25-247 16-246 (375)
326 TIGR02204 MsbA_rel ABC transpo 99.9 2.2E-24 4.8E-29 220.5 12.3 167 97-267 340-564 (576)
327 COG4674 Uncharacterized ABC-ty 99.9 4.6E-25 9.9E-30 190.7 6.1 164 97-267 8-236 (249)
328 PRK13541 cytochrome c biogenes 99.9 2.8E-24 6.1E-29 190.6 11.0 140 97-240 4-188 (195)
329 PRK10938 putative molybdenum t 99.9 2.1E-24 4.6E-29 216.8 11.1 158 97-258 263-484 (490)
330 TIGR01166 cbiO cobalt transpor 99.9 2.2E-24 4.7E-29 190.4 9.6 126 111-237 7-189 (190)
331 COG3845 ABC-type uncharacteriz 99.9 2.9E-24 6.2E-29 207.9 11.2 159 97-260 7-223 (501)
332 PLN03073 ABC transporter F fam 99.9 8.8E-24 1.9E-28 219.9 14.4 164 97-265 180-430 (718)
333 PLN03232 ABC transporter C fam 99.9 7.6E-24 1.6E-28 236.0 13.6 168 97-267 1237-1459(1495)
334 PLN03130 ABC transporter C fam 99.9 7.4E-24 1.6E-28 236.7 13.0 167 97-267 1240-1462(1622)
335 TIGR02525 plasmid_TraJ plasmid 99.9 3.8E-22 8.2E-27 192.5 22.3 223 12-242 9-267 (372)
336 PRK10535 macrolide transporter 99.9 8.1E-24 1.8E-28 219.0 11.2 166 97-265 7-231 (648)
337 PTZ00265 multidrug resistance 99.9 1.5E-23 3.3E-28 232.2 11.7 166 97-266 1168-1452(1466)
338 PRK10522 multidrug transporter 99.9 2.4E-23 5.2E-28 211.9 11.6 159 97-260 325-532 (547)
339 TIGR01194 cyc_pep_trnsptr cycl 99.9 2.9E-23 6.3E-28 211.6 11.8 157 97-258 340-551 (555)
340 TIGR00957 MRP_assoc_pro multi 99.9 4.3E-23 9.4E-28 230.3 13.6 168 97-267 1287-1509(1522)
341 PTZ00265 multidrug resistance 99.9 2.5E-23 5.5E-28 230.5 11.6 153 97-253 385-655 (1466)
342 PTZ00243 ABC transporter; Prov 99.9 4.4E-23 9.5E-28 230.1 13.4 167 97-267 1311-1534(1560)
343 TIGR00955 3a01204 The Eye Pigm 99.9 3.8E-23 8.2E-28 213.0 11.8 154 111-266 40-256 (617)
344 cd03270 ABC_UvrA_I The excisio 99.9 4.8E-23 1E-27 187.0 11.1 77 180-259 135-226 (226)
345 TIGR01420 pilT_fam pilus retra 99.9 1.8E-21 4E-26 187.0 22.5 211 26-246 12-240 (343)
346 COG0396 sufC Cysteine desulfur 99.9 1.3E-22 2.9E-27 179.7 12.9 165 97-266 6-233 (251)
347 PRK13409 putative ATPase RIL; 99.9 2.5E-23 5.4E-28 212.7 9.4 148 99-252 78-286 (590)
348 TIGR02857 CydD thiol reductant 99.9 3.8E-23 8.3E-28 209.5 10.7 148 97-246 323-527 (529)
349 TIGR00957 MRP_assoc_pro multi 99.9 7.6E-23 1.6E-27 228.3 13.8 168 97-267 639-851 (1522)
350 TIGR02524 dot_icm_DotB Dot/Icm 99.9 3.5E-21 7.6E-26 185.4 22.7 227 12-246 3-257 (358)
351 PLN03232 ABC transporter C fam 99.9 1.1E-22 2.3E-27 226.8 13.2 168 97-267 617-829 (1495)
352 KOG0055 Multidrug/pheromone ex 99.9 1.2E-22 2.6E-27 214.6 11.5 166 97-266 990-1213(1228)
353 TIGR02868 CydC thiol reductant 99.9 1.3E-22 2.8E-27 205.6 11.4 138 97-235 337-529 (529)
354 TIGR01271 CFTR_protein cystic 99.9 1.8E-22 4E-27 224.7 12.7 164 97-266 1220-1440(1490)
355 PLN03130 ABC transporter C fam 99.9 2.5E-22 5.4E-27 224.5 13.5 168 97-267 617-829 (1622)
356 COG0488 Uup ATPase components 99.9 2E-22 4.3E-27 202.2 11.1 166 97-266 324-525 (530)
357 TIGR00954 3a01203 Peroxysomal 99.9 2.1E-22 4.6E-27 208.7 11.7 151 97-251 454-652 (659)
358 TIGR00956 3a01205 Pleiotropic 99.9 2.3E-22 4.9E-27 222.5 12.0 165 97-263 762-990 (1394)
359 COG1101 PhnK ABC-type uncharac 99.9 5.7E-22 1.2E-26 174.0 10.1 162 98-262 5-234 (263)
360 COG4619 ABC-type uncharacteriz 99.9 2E-22 4.3E-27 170.6 6.8 136 110-246 17-205 (223)
361 KOG0059 Lipid exporter ABCA1 a 99.9 8.7E-22 1.9E-26 209.7 13.1 167 97-267 567-788 (885)
362 TIGR01271 CFTR_protein cystic 99.9 1.2E-21 2.7E-26 218.2 13.2 153 111-266 441-636 (1490)
363 TIGR02788 VirB11 P-type DNA tr 99.9 9.7E-20 2.1E-24 172.7 23.6 230 24-266 3-281 (308)
364 COG4136 ABC-type uncharacteriz 99.9 1.5E-21 3.3E-26 162.5 9.6 141 97-239 5-199 (213)
365 PTZ00243 ABC transporter; Prov 99.9 1.2E-21 2.7E-26 218.5 11.8 153 111-267 675-871 (1560)
366 PLN03140 ABC transporter G fam 99.9 1.4E-21 3E-26 216.2 11.8 150 111-262 895-1106(1470)
367 KOG0056 Heavy metal exporter H 99.9 2.6E-21 5.7E-26 186.5 10.7 167 97-267 540-762 (790)
368 KOG0061 Transporter, ABC super 99.8 7.6E-21 1.6E-25 195.0 14.6 156 109-266 43-260 (613)
369 COG4778 PhnL ABC-type phosphon 99.8 2.7E-21 6E-26 164.0 8.9 136 110-246 25-223 (235)
370 PRK13764 ATPase; Provisional 99.8 1.3E-19 2.8E-24 183.4 21.8 220 26-260 142-399 (602)
371 TIGR00956 3a01205 Pleiotropic 99.8 4.9E-21 1.1E-25 212.0 11.8 154 111-266 76-300 (1394)
372 PLN03140 ABC transporter G fam 99.8 4.1E-21 8.9E-26 212.5 10.0 155 110-266 179-427 (1470)
373 cd03271 ABC_UvrA_II The excisi 99.8 1.5E-20 3.2E-25 173.7 11.2 78 181-261 168-261 (261)
374 KOG0062 ATPase component of AB 99.8 2.2E-20 4.8E-25 181.3 10.0 165 97-266 83-285 (582)
375 KOG0927 Predicted transporter 99.8 5.5E-20 1.2E-24 179.5 12.0 164 97-265 78-308 (614)
376 COG4133 CcmA ABC-type transpor 99.8 4.5E-20 9.8E-25 159.0 8.8 135 99-236 7-191 (209)
377 COG5265 ATM1 ABC-type transpor 99.8 1.4E-19 3.1E-24 172.2 11.9 166 97-267 265-487 (497)
378 cd03278 ABC_SMC_barmotin Barmo 99.8 5.9E-20 1.3E-24 163.4 7.6 130 113-246 14-186 (197)
379 KOG0054 Multidrug resistance-a 99.8 2.3E-19 4.9E-24 193.7 13.4 167 97-267 521-732 (1381)
380 COG4138 BtuD ABC-type cobalami 99.8 4.6E-20 1E-24 157.3 5.3 151 112-266 15-221 (248)
381 KOG0054 Multidrug resistance-a 99.8 4.5E-19 9.8E-24 191.3 13.4 167 97-267 1141-1363(1381)
382 PRK10436 hypothetical protein; 99.8 1.4E-17 3.1E-22 164.9 22.4 201 25-241 97-328 (462)
383 cd03279 ABC_sbcCD SbcCD and ot 99.8 2E-19 4.2E-24 161.8 8.2 138 114-253 19-209 (213)
384 PRK13900 type IV secretion sys 99.8 3.6E-17 7.9E-22 156.2 23.1 221 17-246 13-280 (332)
385 TIGR02533 type_II_gspE general 99.8 2.9E-17 6.2E-22 164.3 22.7 201 25-241 121-352 (486)
386 KOG0927 Predicted transporter 99.8 8.6E-19 1.9E-23 171.2 11.3 166 97-265 392-595 (614)
387 PF00437 T2SE: Type II/IV secr 99.8 1.1E-17 2.3E-22 155.7 16.8 215 18-246 3-242 (270)
388 PF00005 ABC_tran: ABC transpo 99.8 1.4E-19 2.9E-24 150.9 3.4 99 112-211 1-137 (137)
389 COG4178 ABC-type uncharacteriz 99.8 2.5E-18 5.4E-23 172.6 11.8 148 97-246 395-584 (604)
390 TIGR02538 type_IV_pilB type IV 99.8 4.5E-17 9.7E-22 166.0 21.0 203 25-241 194-426 (564)
391 COG1245 Predicted ATPase, RNas 99.7 3.3E-18 7.1E-23 164.2 8.8 128 119-246 364-527 (591)
392 TIGR02782 TrbB_P P-type conjug 99.7 2.4E-16 5.3E-21 148.7 21.3 214 19-246 10-249 (299)
393 COG2804 PulE Type II secretory 99.7 1.8E-16 4E-21 155.2 20.9 202 26-242 138-369 (500)
394 PRK13851 type IV secretion sys 99.7 2.2E-16 4.8E-21 151.2 20.7 215 18-246 13-281 (344)
395 TIGR03819 heli_sec_ATPase heli 99.7 2.6E-16 5.7E-21 150.8 21.1 213 20-242 56-295 (340)
396 cd03280 ABC_MutS2 MutS2 homolo 99.7 3E-18 6.5E-23 152.6 6.7 137 112-258 17-171 (200)
397 PRK13833 conjugal transfer pro 99.7 4.9E-16 1.1E-20 147.4 21.5 214 17-246 20-260 (323)
398 TIGR00630 uvra excinuclease AB 99.7 2.1E-17 4.4E-22 175.2 13.3 81 181-264 827-923 (924)
399 cd03240 ABC_Rad50 The catalyti 99.7 1.3E-17 2.7E-22 149.2 10.0 127 118-246 19-193 (204)
400 cd03272 ABC_SMC3_euk Eukaryoti 99.7 1.2E-17 2.6E-22 152.8 9.6 65 180-246 156-231 (243)
401 PRK00349 uvrA excinuclease ABC 99.7 3.7E-17 8E-22 173.6 13.9 84 181-267 829-928 (943)
402 PRK00635 excinuclease ABC subu 99.7 4.2E-17 9.1E-22 180.4 13.7 83 181-266 808-906 (1809)
403 COG4615 PvdE ABC-type sideroph 99.7 5.1E-17 1.1E-21 153.8 12.2 157 97-258 325-529 (546)
404 PRK13894 conjugal transfer ATP 99.7 1.4E-15 3.1E-20 144.5 21.7 214 17-246 24-264 (319)
405 cd03274 ABC_SMC4_euk Eukaryoti 99.7 5E-17 1.1E-21 146.2 8.6 68 180-251 125-203 (212)
406 KOG0060 Long-chain acyl-CoA tr 99.7 1.3E-16 2.8E-21 157.1 11.0 149 97-246 436-637 (659)
407 KOG0065 Pleiotropic drug resis 99.7 4.8E-17 1E-21 172.8 6.6 160 102-263 797-1018(1391)
408 cd03276 ABC_SMC6_euk Eukaryoti 99.7 8.7E-17 1.9E-21 143.1 7.1 128 117-246 17-186 (198)
409 COG1129 MglA ABC-type sugar tr 99.7 1.6E-16 3.5E-21 156.7 9.6 148 112-262 275-486 (500)
410 KOG0066 eIF2-interacting prote 99.7 1.5E-16 3.3E-21 152.1 8.3 142 97-239 589-765 (807)
411 cd01131 PilT Pilus retraction 99.7 1.3E-15 2.9E-20 135.5 13.4 118 123-246 2-119 (198)
412 KOG0062 ATPase component of AB 99.7 1.8E-16 3.9E-21 154.3 8.3 161 97-261 365-564 (582)
413 cd01129 PulE-GspE PulE/GspE Th 99.7 6.1E-15 1.3E-19 136.9 18.2 156 76-242 21-191 (264)
414 cd03273 ABC_SMC2_euk Eukaryoti 99.7 3E-16 6.5E-21 144.5 9.0 65 180-246 164-239 (251)
415 cd03275 ABC_SMC1_euk Eukaryoti 99.6 2E-16 4.3E-21 145.4 7.0 68 181-251 154-232 (247)
416 KOG0064 Peroxisomal long-chain 99.6 4.2E-16 9.1E-21 151.9 9.3 153 111-265 497-698 (728)
417 cd03227 ABC_Class2 ABC-type Cl 99.6 5.2E-16 1.1E-20 133.7 8.7 123 119-246 18-151 (162)
418 COG4170 SapD ABC-type antimicr 99.6 1.5E-16 3.2E-21 139.6 4.4 171 97-269 6-251 (330)
419 cd03239 ABC_SMC_head The struc 99.6 4.9E-16 1.1E-20 136.0 7.8 121 123-246 23-168 (178)
420 COG0630 VirB11 Type IV secreto 99.6 3.3E-14 7.2E-19 134.8 20.1 216 19-246 18-261 (312)
421 KOG2355 Predicted ABC-type tra 99.6 1.7E-15 3.7E-20 132.5 10.1 161 97-261 16-232 (291)
422 cd03243 ABC_MutS_homologs The 99.6 7.1E-16 1.5E-20 137.5 7.6 142 115-262 22-175 (202)
423 COG1245 Predicted ATPase, RNas 99.6 9E-16 1.9E-20 147.6 7.5 132 119-252 97-288 (591)
424 cd01130 VirB11-like_ATPase Typ 99.6 2.4E-14 5.1E-19 126.1 12.8 129 111-246 14-145 (186)
425 KOG0066 eIF2-interacting prote 99.6 2.1E-15 4.6E-20 144.4 5.9 153 97-255 267-487 (807)
426 cd03285 ABC_MSH2_euk MutS2 hom 99.6 4.3E-15 9.4E-20 134.5 7.4 142 112-260 20-175 (222)
427 cd03277 ABC_SMC5_euk Eukaryoti 99.5 1.3E-14 2.9E-19 130.5 8.3 73 180-254 124-211 (213)
428 cd03283 ABC_MutS-like MutS-lik 99.5 4.2E-14 9.2E-19 125.9 8.6 117 119-241 22-154 (199)
429 COG4962 CpaF Flp pilus assembl 99.5 5.9E-13 1.3E-17 125.2 16.3 215 19-244 50-292 (355)
430 PRK00635 excinuclease ABC subu 99.5 1.5E-13 3.2E-18 152.7 13.9 84 181-267 1698-1797(1809)
431 cd03284 ABC_MutS1 MutS1 homolo 99.5 6.8E-14 1.5E-18 126.2 8.6 143 112-264 21-179 (216)
432 cd03282 ABC_MSH4_euk MutS4 hom 99.5 3.7E-14 8.1E-19 126.7 6.8 128 112-243 19-159 (204)
433 COG3845 ABC-type uncharacteriz 99.5 1.8E-13 3.9E-18 133.3 10.7 163 97-263 260-489 (501)
434 COG0178 UvrA Excinuclease ATPa 99.5 4.9E-13 1.1E-17 136.4 13.3 83 182-267 822-920 (935)
435 cd03281 ABC_MSH5_euk MutS5 hom 99.4 8.3E-13 1.8E-17 118.8 10.3 110 123-241 30-160 (213)
436 COG2401 ABC-type ATPase fused 99.4 2.1E-13 4.5E-18 130.2 6.3 136 110-246 397-580 (593)
437 smart00534 MUTSac ATPase domai 99.4 1.5E-12 3.3E-17 114.5 8.6 110 125-244 2-130 (185)
438 cd03241 ABC_RecN RecN ATPase i 99.4 1.6E-12 3.5E-17 121.4 8.3 66 183-252 171-247 (276)
439 COG1855 ATPase (PilT family) [ 99.3 6.8E-12 1.5E-16 120.8 9.7 203 26-242 148-372 (604)
440 PRK13695 putative NTPase; Prov 99.3 2.7E-11 5.9E-16 105.4 11.1 129 124-258 2-156 (174)
441 KOG0065 Pleiotropic drug resis 99.3 4.6E-12 1E-16 135.3 6.4 156 110-267 129-352 (1391)
442 cd03287 ABC_MSH3_euk MutS3 hom 99.3 1.8E-11 3.8E-16 110.8 8.7 125 112-239 21-158 (222)
443 TIGR00630 uvra excinuclease AB 99.2 8E-12 1.7E-16 133.0 6.6 85 179-266 484-583 (924)
444 TIGR01069 mutS2 MutS2 family p 99.2 6.3E-12 1.4E-16 132.1 5.7 119 115-238 314-448 (771)
445 PRK00349 uvrA excinuclease ABC 99.2 9E-12 2E-16 132.9 6.4 86 179-267 486-586 (943)
446 KOG0063 RNAse L inhibitor, ABC 99.2 1.8E-11 3.8E-16 117.5 5.1 136 114-251 354-531 (592)
447 cd03242 ABC_RecF RecF is a rec 99.2 1.8E-10 3.9E-15 107.4 10.2 70 183-255 184-269 (270)
448 cd03286 ABC_MSH6_euk MutS6 hom 99.1 1.5E-10 3.3E-15 104.4 7.4 128 112-242 20-160 (218)
449 cd01124 KaiC KaiC is a circadi 99.1 1.6E-10 3.4E-15 101.0 6.9 122 124-246 1-160 (187)
450 PRK00409 recombination and DNA 99.1 9.8E-11 2.1E-15 123.5 6.1 120 122-246 327-461 (782)
451 cd01120 RecA-like_NTPases RecA 99.1 6.2E-10 1.3E-14 94.0 9.4 115 124-239 1-141 (165)
452 PRK08533 flagellar accessory p 99.0 2.1E-09 4.5E-14 97.9 11.0 114 118-233 20-161 (230)
453 smart00382 AAA ATPases associa 98.9 5.5E-09 1.2E-13 84.9 9.8 111 122-234 2-125 (148)
454 PRK06067 flagellar accessory p 98.9 1E-08 2.2E-13 93.4 11.8 134 118-255 21-183 (234)
455 PRK07721 fliI flagellum-specif 98.9 7.1E-09 1.5E-13 102.5 9.9 147 111-264 148-341 (438)
456 KOG0063 RNAse L inhibitor, ABC 98.8 6.6E-09 1.4E-13 100.1 5.5 132 119-252 97-288 (592)
457 PF02463 SMC_N: RecF/RecN/SMC 98.8 4E-08 8.7E-13 88.4 10.0 64 182-246 136-209 (220)
458 COG3910 Predicted ATPase [Gene 98.7 1.4E-07 3E-12 82.1 9.6 125 111-236 25-189 (233)
459 PF13304 AAA_21: AAA domain; P 98.7 2.3E-08 4.9E-13 89.4 5.0 55 184-238 238-302 (303)
460 PRK06793 fliI flagellum-specif 98.7 5.6E-08 1.2E-12 95.7 7.6 137 112-258 147-303 (432)
461 cd01128 rho_factor Transcripti 98.6 4.7E-08 1E-12 90.0 6.4 134 118-256 12-212 (249)
462 TIGR00618 sbcc exonuclease Sbc 98.6 3E-08 6.4E-13 108.5 5.3 72 178-251 946-1034(1042)
463 COG1066 Sms Predicted ATP-depe 98.6 4E-07 8.7E-12 87.7 11.5 188 119-318 90-315 (456)
464 PRK05399 DNA mismatch repair p 98.6 1.9E-07 4.1E-12 99.9 9.3 120 112-243 598-737 (854)
465 cd01121 Sms Sms (bacterial rad 98.6 6.8E-08 1.5E-12 93.9 5.3 197 119-320 79-307 (372)
466 PRK09183 transposase/IS protei 98.6 2.9E-07 6.4E-12 85.3 9.0 134 112-263 93-242 (259)
467 COG1618 Predicted nucleotide k 98.5 1E-06 2.2E-11 74.9 10.7 130 123-262 6-162 (179)
468 PTZ00132 GTP-binding nuclear p 98.5 2.1E-07 4.6E-12 83.4 6.8 31 187-217 157-192 (215)
469 TIGR00634 recN DNA repair prot 98.5 7.6E-08 1.6E-12 98.7 4.2 69 181-253 439-518 (563)
470 cd00009 AAA The AAA+ (ATPases 98.5 6.4E-07 1.4E-11 73.4 8.6 103 121-236 18-131 (151)
471 cd00820 PEPCK_HprK Phosphoenol 98.4 1.1E-07 2.3E-12 76.1 2.4 33 111-143 4-36 (107)
472 PF00488 MutS_V: MutS domain V 98.4 6.6E-07 1.4E-11 81.8 7.1 109 123-240 44-171 (235)
473 TIGR00416 sms DNA repair prote 98.4 7.4E-07 1.6E-11 88.9 7.8 111 119-237 91-224 (454)
474 PRK13830 conjugal transfer pro 98.4 1.7E-06 3.6E-11 92.4 10.9 62 198-261 650-728 (818)
475 TIGR03238 dnd_assoc_3 dnd syst 98.4 2.6E-07 5.6E-12 91.3 4.1 45 110-156 20-64 (504)
476 PRK06995 flhF flagellar biosyn 98.4 1.4E-06 3E-11 87.1 9.3 45 116-160 250-295 (484)
477 PRK10869 recombination and rep 98.4 3.1E-07 6.8E-12 93.8 4.5 68 181-252 429-507 (553)
478 TIGR01026 fliI_yscN ATPase Fli 98.4 1.6E-06 3.4E-11 86.1 9.0 146 111-264 153-346 (440)
479 PF03266 NTPase_1: NTPase; In 98.3 1.9E-06 4.1E-11 74.8 8.2 43 193-236 89-136 (168)
480 PRK08181 transposase; Validate 98.3 1.5E-06 3.1E-11 81.0 7.8 130 118-265 102-246 (269)
481 cd01125 repA Hexameric Replica 98.3 7E-07 1.5E-11 81.6 5.6 37 122-158 1-48 (239)
482 PRK10246 exonuclease subunit S 98.3 7E-07 1.5E-11 97.7 5.8 69 178-246 945-1028(1047)
483 PHA02562 46 endonuclease subun 98.3 4.3E-07 9.3E-12 92.9 3.9 67 180-251 466-550 (562)
484 PRK04296 thymidine kinase; Pro 98.3 6.4E-06 1.4E-10 72.8 10.8 110 122-236 2-117 (190)
485 TIGR00606 rad50 rad50. This fa 98.3 1.1E-06 2.4E-11 98.3 6.3 65 180-244 1197-1279(1311)
486 PRK03918 chromosome segregatio 98.3 7.3E-07 1.6E-11 96.0 4.6 70 179-251 785-867 (880)
487 PRK11823 DNA repair protein Ra 98.2 4.5E-06 9.8E-11 83.2 9.3 115 119-236 77-209 (446)
488 PRK14088 dnaA chromosomal repl 98.2 2.8E-06 6.1E-11 84.6 7.1 124 124-263 132-265 (440)
489 PRK14722 flhF flagellar biosyn 98.2 1.6E-06 3.5E-11 84.1 5.1 48 112-159 127-175 (374)
490 TIGR02655 circ_KaiC circadian 98.2 3.6E-07 7.9E-12 92.0 0.6 38 118-157 17-56 (484)
491 PRK13891 conjugal transfer pro 98.2 1.3E-05 2.7E-10 86.1 12.1 48 193-240 680-735 (852)
492 PRK10416 signal recognition pa 98.2 4.4E-06 9.5E-11 79.7 7.8 92 120-212 112-208 (318)
493 PRK06526 transposase; Provisio 98.2 3.1E-06 6.7E-11 78.3 6.1 128 119-264 95-237 (254)
494 PF09818 ABC_ATPase: Predicted 98.2 1.3E-05 2.9E-10 78.2 10.6 133 119-254 242-415 (448)
495 PTZ00454 26S protease regulato 98.1 7.9E-06 1.7E-10 80.3 8.4 119 119-263 176-318 (398)
496 TIGR03881 KaiC_arch_4 KaiC dom 98.1 5.1E-06 1.1E-10 75.2 6.6 39 118-158 16-55 (229)
497 PRK06893 DNA replication initi 98.1 1.3E-05 2.8E-10 72.9 9.0 114 123-263 40-163 (229)
498 PRK00300 gmk guanylate kinase; 98.1 5.7E-06 1.2E-10 73.5 6.5 28 120-147 3-30 (205)
499 PLN03210 Resistant to P. syrin 98.1 3.9E-06 8.5E-11 92.9 6.5 122 118-240 203-339 (1153)
500 PF13555 AAA_29: P-loop contai 98.1 3.7E-06 8.1E-11 60.4 3.5 33 117-149 17-50 (62)
No 1
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.3e-37 Score=272.75 Aligned_cols=168 Identities=16% Similarity=0.237 Sum_probs=137.5
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEcCCc-----------cccc
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSN-----------EIGG 165 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~~~~-----------ei~~ 165 (337)
+++++++|+...+ ++++++.+.+|+.+.|+||+|||||||||+|++|..++ .+.|.+-.+.. +++.
T Consensus 5 i~~l~K~fg~~~V--Lkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~-~G~I~i~g~~~~~~~~~~~~R~~vGm 81 (240)
T COG1126 5 IKNLSKSFGDKEV--LKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPD-SGSITVDGEDVGDKKDILKLRRKVGM 81 (240)
T ss_pred EEeeeEEeCCeEE--ecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCC-CceEEECCEeccchhhHHHHHHhcCe
Confidence 6799999998877 99999999999999999999999999999999999998 45554322111 1111
Q ss_pred C----CCCccccccc------------------------c----------hhccCCCcchhHHHHHHHHHhhCCcEEEEc
Q 019702 166 D----GDIPHSAIGT------------------------A----------RRMQVPEPSLQHKVMIEAVENHMPEVIIVD 207 (337)
Q Consensus 166 ~----~~~~~~~~~~------------------------~----------~~~~~~S~g~k~r~~ia~al~~~P~vlilD 207 (337)
. ..+||..+.. + .....+|||||||+||||||+++|+++++|
T Consensus 82 VFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFD 161 (240)
T COG1126 82 VFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFD 161 (240)
T ss_pred ecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeec
Confidence 1 1233332110 0 223457999999999999999999999999
Q ss_pred CCCCHHHHH-------HHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHhhh
Q 019702 208 EIGTEAEAH-------ACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARRCQ 269 (337)
Q Consensus 208 Ep~~~ld~~-------~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~~~ 269 (337)
||||+||++ .+..+++.|.|.+++||.+.++..++||++ +|++|+++..|+|+++|.++.
T Consensus 162 EPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~Vadrvi--Fmd~G~iie~g~p~~~f~~p~ 228 (240)
T COG1126 162 EPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVI--FMDQGKIIEEGPPEEFFDNPK 228 (240)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEE--EeeCCEEEEecCHHHHhcCCC
Confidence 999999965 466788999999999999999999999999 999999999999999998643
No 2
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=100.00 E-value=1.5e-35 Score=261.15 Aligned_cols=278 Identities=37% Similarity=0.529 Sum_probs=218.4
Q ss_pred chHHHHHHhcCHHHHHHHhcccCCCCeeEEEEecCCccEEEEeCccCceeccCCCCCHHHHHHHHHHHhcc---C--CCc
Q 019702 2 NAFGAFWQILPSDLRDRLQNDSKRGQLLEVILDLGRLPEARYLGEFGGKYLRSTEVSVEELEYAQSAVGEF---G--GDN 76 (337)
Q Consensus 2 ~~~~~~~~~lp~~~~~~l~~~~~~~~~~ei~l~~g~~~~~~~~g~~~~~~~~~~~~t~~~l~~~~~~~~~~---~--~~~ 76 (337)
+++++++++||..+++.|+++++..+++||++++|+||.+++.+.. .+++..++|++|+..++++++.| . ++.
T Consensus 1 ~dleei~~iLPe~i~~~l~~~p~~~~l~Evri~v~Rp~e~~~~~~~--vyl~~~~vT~ed~~~~~~rls~ysiys~e~el 78 (308)
T COG3854 1 DDLEEIFSILPEKIRQILKEIPDRNNLEEVRIRVNRPLEAIFPGQP--VYLSYIGVTKEDLQKTLNRLSGYSIYSVEEEL 78 (308)
T ss_pred CCHHHHHHhChHHHHHHHHhCCccccceeeEeecCCCceEecCCCc--eecccccccHHHHHHHHHHhcccccccchhhh
Confidence 5789999999999999999999889999999999999999998864 47777889999999999988643 2 233
Q ss_pred ceE--ecCceeEEEEEeeCCCc---------EeeEEEEECCccccchhh-hhhcccCCCE-EEEEcCCCCcHHHHHHHHH
Q 019702 77 RAG--IEGTLHRISAIRSRKGA---------IVGLTCRVGRAVSGHIDM-VYDLLHYGKS-ILFVGRPGVGKTTVMREIA 143 (337)
Q Consensus 77 ~~~--~~g~~~rv~~~~~~~g~---------i~~l~~r~~~~~~~~~~~-l~~~v~~g~~-v~IiGpnGsGKTTLL~~l~ 143 (337)
+.| .....|||+...+.... |.++++|.++...|+.+. +....+.|.. ++|+||||+|||||||.|+
T Consensus 79 r~Gyit~~ggHRVg~~g~~~~E~~~vkt~rdI~slniRv~r~v~Gt~~~li~~ly~~g~lntLiigpP~~GKTTlLRdia 158 (308)
T COG3854 79 RAGYITIRGGHRVGLAGNVTLEEGKVKTIRDISSLNIRVARQVFGTANPLIKDLYQNGWLNTLIIGPPQVGKTTLLRDIA 158 (308)
T ss_pred hcceeEeeccceeeeccccccccccccceeeeceeeeeehhhhhccchHHHHHHHhcCceeeEEecCCCCChHHHHHHHH
Confidence 333 11123455544433322 889999999998888874 5555677876 9999999999999999999
Q ss_pred cccccc----CCCeEEEEcCCcccccC-CCCcccccccchhccCCCcchhHHHHHHHHHhhCCcEEEEcCCCCHHHHHHH
Q 019702 144 RVLSDE----FQKRVVIVDTSNEIGGD-GDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHAC 218 (337)
Q Consensus 144 gll~~~----~~~~i~~v~~~~ei~~~-~~~~~~~~~~~~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~~ld~~~l 218 (337)
++++.. ...+++++|+++|++++ .++|+.. ..++++++.++.|..+++++...|.|+||++||++..+|..++
T Consensus 159 R~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~--~g~R~dVld~cpk~~gmmmaIrsm~PEViIvDEIGt~~d~~A~ 236 (308)
T COG3854 159 RLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHG--RGRRMDVLDPCPKAEGMMMAIRSMSPEVIIVDEIGTEEDALAI 236 (308)
T ss_pred HHhhccccccCCceEEEEeccchhhccccCCchhh--hhhhhhhcccchHHHHHHHHHHhcCCcEEEEeccccHHHHHHH
Confidence 999876 56799999999999875 3455444 4478999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHhhhHHHHhhcCCCchhhh
Q 019702 219 RSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARRCQKSILERKAPPTFYFL 284 (337)
Q Consensus 219 ~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (337)
..+.+.|+.++.|.|.....+...++.+++++ +-+.+..+...+..+.++...+.+..||+|...
T Consensus 237 ~ta~~~GVkli~TaHG~~iedl~krp~lkdlv-~i~af~r~~elsrr~g~g~v~~ird~~~~~~~~ 301 (308)
T COG3854 237 LTALHAGVKLITTAHGNGIEDLIKRPTLKDLV-EIQAFDRGIELSRRRGPGTVVLIRDAPPNFKER 301 (308)
T ss_pred HHHHhcCcEEEEeeccccHHHhhcChhHHHHH-hhhHHHHHHHHhhccCCCeEEEEecCCCcHHHH
Confidence 99999999999999999999889999998877 223322233333333233333344445555443
No 3
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=6.5e-36 Score=272.55 Aligned_cols=167 Identities=19% Similarity=0.242 Sum_probs=139.7
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCC------------------CeEEEEc
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ------------------KRVVIVD 158 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~------------------~~i~~v~ 158 (337)
+++++++|+...+ ++++++.+++|++++|+||||||||||||+|+|+++|..+ +++.|++
T Consensus 5 ~~~ls~~y~~~~i--l~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vp 82 (258)
T COG1120 5 VENLSFGYGGKPI--LDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVP 82 (258)
T ss_pred EEEEEEEECCeeE--EecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEec
Confidence 6799999997776 9999999999999999999999999999999999998732 3567777
Q ss_pred CCccccc---------CCCCccccccc-----------------------chhccCCCcchhHHHHHHHHHhhCCcEEEE
Q 019702 159 TSNEIGG---------DGDIPHSAIGT-----------------------ARRMQVPEPSLQHKVMIEAVENHMPEVIIV 206 (337)
Q Consensus 159 ~~~ei~~---------~~~~~~~~~~~-----------------------~~~~~~~S~g~k~r~~ia~al~~~P~vlil 206 (337)
|.....+ .+..|+..... .+.+..+||||+||+.||+||+++|++|+|
T Consensus 83 Q~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iLLL 162 (258)
T COG1120 83 QSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLL 162 (258)
T ss_pred cCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEEEe
Confidence 7644322 12333321111 144567899999999999999999999999
Q ss_pred cCCCCHHHH-------HHHHHHH-hcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHh
Q 019702 207 DEIGTEAEA-------HACRSIA-ERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (337)
Q Consensus 207 DEp~~~ld~-------~~l~~~~-~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~ 267 (337)
||||+.+|+ +.+.+++ ++|.|+|+++||.+.+..+||+++ +|++|++++.|+|++++..
T Consensus 163 DEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i--~lk~G~i~a~G~p~evlT~ 229 (258)
T COG1120 163 DEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLI--LLKDGKIVAQGTPEEVLTE 229 (258)
T ss_pred CCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEE--EEECCeEEeecCcchhcCH
Confidence 999999994 5677777 569999999999999999999999 9999999999999998863
No 4
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=1.2e-33 Score=251.31 Aligned_cols=175 Identities=16% Similarity=0.168 Sum_probs=139.4
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEE--------------------
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVI-------------------- 156 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~-------------------- 156 (337)
+++++++|+...+ ++++++.+++|++++|+||+|||||||||.|.|+++|+. +.|.+
T Consensus 11 vr~v~~~fG~~~I--ld~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~-GeI~i~G~~i~~ls~~~~~~ir~r~ 87 (263)
T COG1127 11 VRGVTKSFGDRVI--LDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDK-GEILIDGEDIPQLSEEELYEIRKRM 87 (263)
T ss_pred EeeeeeecCCEEE--ecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCC-CeEEEcCcchhccCHHHHHHHHhhe
Confidence 6789999999888 999999999999999999999999999999999999984 33333
Q ss_pred --EcCCcccccCCCCccccccc------------------------------chhccCCCcchhHHHHHHHHHhhCCcEE
Q 019702 157 --VDTSNEIGGDGDIPHSAIGT------------------------------ARRMQVPEPSLQHKVMIEAVENHMPEVI 204 (337)
Q Consensus 157 --v~~~~ei~~~~~~~~~~~~~------------------------------~~~~~~~S~g~k~r~~ia~al~~~P~vl 204 (337)
+.|...+.....+.+|.... ......+||||++|+++|||++.+|++|
T Consensus 88 GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAialdPell 167 (263)
T COG1127 88 GVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELL 167 (263)
T ss_pred eEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcCCCEE
Confidence 22222211111111111000 0223456999999999999999999999
Q ss_pred EEcCCCCHHHH-------HHHHHHHhc-CCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHhhhHHHHhhc
Q 019702 205 IVDEIGTEAEA-------HACRSIAER-GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARRCQKSILERK 276 (337)
Q Consensus 205 ilDEp~~~ld~-------~~l~~~~~~-G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~~~~~~~~~~ 276 (337)
++||||+++|. +++..+.++ |.|++++|||++.+..+||+++ ++.+|++++.|+++++.....+.+.+.+
T Consensus 168 ~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~--~L~~gkv~~~Gt~~el~~sd~P~v~qf~ 245 (263)
T COG1127 168 FLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVA--VLADGKVIAEGTPEELLASDDPWVRQFF 245 (263)
T ss_pred EecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEE--EEeCCEEEEeCCHHHHHhCCCHHHHHHh
Confidence 99999999993 567777766 9999999999999999999999 9999999999999999986555555544
No 5
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=9.3e-34 Score=257.28 Aligned_cols=166 Identities=16% Similarity=0.259 Sum_probs=136.2
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCC---------------CeEEEEcCCc
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ---------------KRVVIVDTSN 161 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~---------------~~i~~v~~~~ 161 (337)
++|++++|.... +++++++.+++|++++|+||||||||||+++|+|+++|..+ .+|+|++|..
T Consensus 7 v~nl~v~y~~~~--vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~ 84 (254)
T COG1121 7 VENLTVSYGNRP--VLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKS 84 (254)
T ss_pred EeeeEEEECCEe--eeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCccc
Confidence 779999998653 59999999999999999999999999999999999998732 3578888755
Q ss_pred ccccC-----------CCCccc------------cc-------c----cchhccCCCcchhHHHHHHHHHhhCCcEEEEc
Q 019702 162 EIGGD-----------GDIPHS------------AI-------G----TARRMQVPEPSLQHKVMIEAVENHMPEVIIVD 207 (337)
Q Consensus 162 ei~~~-----------~~~~~~------------~~-------~----~~~~~~~~S~g~k~r~~ia~al~~~P~vlilD 207 (337)
.+-.. +.+++. .+ + ..++.+.+||||+||+.|||||+.+|++|+||
T Consensus 85 ~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLD 164 (254)
T COG1121 85 SVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLD 164 (254)
T ss_pred ccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEec
Confidence 43211 111111 00 0 01556778999999999999999999999999
Q ss_pred CCCCHHHH-------HHHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHh
Q 019702 208 EIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (337)
Q Consensus 208 Ep~~~ld~-------~~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~ 267 (337)
||+++.|. +.+.+++++|+||++++||++.+..++|+++ +++ .++++.|+|++++..
T Consensus 165 EP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi--~Ln-~~~~~~G~~~~~~~~ 228 (254)
T COG1121 165 EPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVI--CLN-RHLIASGPPEEVLTE 228 (254)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEE--EEc-CeeEeccChhhccCH
Confidence 99999994 5678888889999999999999999999999 665 678899999998864
No 6
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=4e-34 Score=247.81 Aligned_cols=167 Identities=23% Similarity=0.268 Sum_probs=131.9
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEE-----cCCc----ccccC-
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIV-----DTSN----EIGGD- 166 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v-----~~~~----ei~~~- 166 (337)
+.+++++|+..+ .++++++|.++.|++++|+|||||||||+||+|+.++.|+. +.+.+- .++. .++-.
T Consensus 4 v~~l~K~y~~~v-~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~-G~v~idg~d~~~~p~~vrr~IGVl~ 81 (245)
T COG4555 4 VTDLTKSYGSKV-QAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDS-GKVTIDGVDTVRDPSFVRRKIGVLF 81 (245)
T ss_pred eeehhhhccCHH-hhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCC-ceEEEeecccccChHHHhhhcceec
Confidence 568999998844 46999999999999999999999999999999999999984 333221 1111 11100
Q ss_pred ---CCCc-----ccc-------------c-----------c----cchhccCCCcchhHHHHHHHHHhhCCcEEEEcCCC
Q 019702 167 ---GDIP-----HSA-------------I-----------G----TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIG 210 (337)
Q Consensus 167 ---~~~~-----~~~-------------~-----------~----~~~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~ 210 (337)
+.+. ++. + + ..+++..+|.|+|||++||+|++++|+++++|||+
T Consensus 82 ~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP~ 161 (245)
T COG4555 82 GERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPT 161 (245)
T ss_pred CCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcCCC
Confidence 0000 000 0 0 01456667999999999999999999999999999
Q ss_pred CHHHH-------HHHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHh
Q 019702 211 TEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (337)
Q Consensus 211 ~~ld~-------~~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~ 267 (337)
+++|+ +.+.++++.|.+||++||.+.+++.+||+++ ++++|++|+.|+++++...
T Consensus 162 sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvi--vlh~Gevv~~gs~~~l~~r 223 (245)
T COG4555 162 SGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVI--VLHKGEVVLEGSIEALDAR 223 (245)
T ss_pred CCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEE--EEecCcEEEcCCHHHHHHH
Confidence 99996 3456667779999999999999999999999 9999999999999998764
No 7
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=1.3e-33 Score=252.59 Aligned_cols=172 Identities=17% Similarity=0.245 Sum_probs=138.5
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEcCC----------ccccc-
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTS----------NEIGG- 165 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~~~----------~ei~~- 165 (337)
+++++++|+...+ ++++++.+++|+++.++||+||||||+|++|++++.|+. +.|.+-.++ ..+++
T Consensus 4 ~~nvsk~y~~~~a--v~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~-G~I~i~g~~i~~~d~~~LRr~IGYv 80 (309)
T COG1125 4 FENVSKRYGNKKA--VDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTS-GEILIDGEDISDLDPVELRRKIGYV 80 (309)
T ss_pred eeeeehhcCCcee--eeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCC-ceEEECCeecccCCHHHHHHhhhhh
Confidence 6799999997766 999999999999999999999999999999999999984 445443221 11222
Q ss_pred ---CCCCccccccc-----------------------------------chhccCCCcchhHHHHHHHHHhhCCcEEEEc
Q 019702 166 ---DGDIPHSAIGT-----------------------------------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVD 207 (337)
Q Consensus 166 ---~~~~~~~~~~~-----------------------------------~~~~~~~S~g~k~r~~ia~al~~~P~vlilD 207 (337)
.+.+||..+.. .+....+||||+||+.++|||+.+|++|++|
T Consensus 81 iQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~ilLMD 160 (309)
T COG1125 81 IQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMD 160 (309)
T ss_pred hhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeEeec
Confidence 12344432111 0334557999999999999999999999999
Q ss_pred CCCCHHHH-------HHHHHHH-hcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHhhhHHHH
Q 019702 208 EIGTEAEA-------HACRSIA-ERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARRCQKSIL 273 (337)
Q Consensus 208 Ep~~~ld~-------~~l~~~~-~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~~~~~~~ 273 (337)
||++++|. +.+..+. +-|+|+|++|||++++-.++|+++ +|++|+++.+++|++++.++..+..
T Consensus 161 EPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~--vm~~G~i~Q~~~P~~il~~Pan~FV 232 (309)
T COG1125 161 EPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIA--VMDAGEIVQYDTPDEILANPANDFV 232 (309)
T ss_pred CCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEE--EecCCeEEEeCCHHHHHhCccHHHH
Confidence 99999994 3455565 449999999999999999999999 9999999999999999998655543
No 8
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=3.3e-33 Score=265.15 Aligned_cols=172 Identities=19% Similarity=0.252 Sum_probs=136.7
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCC----------------CeEEEEcCC
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ----------------KRVVIVDTS 160 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~----------------~~i~~v~~~ 160 (337)
+++++++|+.... ++++++.+++||++.|+||||||||||||+|+|+..|+.+ +.|.++.|+
T Consensus 8 i~~v~k~yg~~~a--v~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig~VFQ~ 85 (352)
T COG3842 8 IRNVSKSFGDFTA--VDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIGMVFQS 85 (352)
T ss_pred EEeeeeecCCeeE--EecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhcccceeecC
Confidence 6799999996555 9999999999999999999999999999999999999832 223333333
Q ss_pred cccccCCCCccccccc----------------------------------chhccCCCcchhHHHHHHHHHhhCCcEEEE
Q 019702 161 NEIGGDGDIPHSAIGT----------------------------------ARRMQVPEPSLQHKVMIEAVENHMPEVIIV 206 (337)
Q Consensus 161 ~ei~~~~~~~~~~~~~----------------------------------~~~~~~~S~g~k~r~~ia~al~~~P~vlil 206 (337)
--+ +||..+.. .++...+||||+||+++||||+.+|++|+|
T Consensus 86 YAL-----FPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~vLLL 160 (352)
T COG3842 86 YAL-----FPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLL 160 (352)
T ss_pred ccc-----CCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcchhhh
Confidence 222 22221110 133445799999999999999999999999
Q ss_pred cCCCCHHHHHH-------HHHHH-hcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHhhhHH-HHhhcC
Q 019702 207 DEIGTEAEAHA-------CRSIA-ERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARRCQKS-ILERKA 277 (337)
Q Consensus 207 DEp~~~ld~~~-------l~~~~-~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~~~~~-~~~~~~ 277 (337)
|||.+++|.++ ++++. +.|+|.|++|||.+++..++|+++ +|++|+|...|+|++++..+... +....+
T Consensus 161 DEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~--Vm~~G~I~Q~gtP~eiY~~P~~~fVA~FiG 238 (352)
T COG3842 161 DEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIA--VMNDGRIEQVGTPEEIYERPATRFVADFIG 238 (352)
T ss_pred cCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceE--EccCCceeecCCHHHHhhCcchHHHHHHhC
Confidence 99999999532 44444 559999999999999999999999 99999999999999999875332 333444
No 9
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.1e-32 Score=252.88 Aligned_cols=176 Identities=14% Similarity=0.159 Sum_probs=136.0
Q ss_pred EeeEEEEECCc---cccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEE-----------------
Q 019702 97 IVGLTCRVGRA---VSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVI----------------- 156 (337)
Q Consensus 97 i~~l~~r~~~~---~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~----------------- 156 (337)
++++++.|... ...+++++++.+++|++++|+|.+|||||||+|+++++-.|+. +.|.+
T Consensus 4 l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~Pts-G~v~v~G~di~~l~~~~Lr~~R 82 (339)
T COG1135 4 LENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTS-GSVFVDGQDLTALSEAELRQLR 82 (339)
T ss_pred EEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCC-ceEEEcCEecccCChHHHHHHH
Confidence 56888888762 2346999999999999999999999999999999999999984 44433
Q ss_pred -----EcCCcccccCCCCccccccc----------------------------chhccCCCcchhHHHHHHHHHhhCCcE
Q 019702 157 -----VDTSNEIGGDGDIPHSAIGT----------------------------ARRMQVPEPSLQHKVMIEAVENHMPEV 203 (337)
Q Consensus 157 -----v~~~~ei~~~~~~~~~~~~~----------------------------~~~~~~~S~g~k~r~~ia~al~~~P~v 203 (337)
++|.-.+.....+.++.... .+....+||||||||+|||||+.+|+|
T Consensus 83 ~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~P~i 162 (339)
T COG1135 83 QKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKI 162 (339)
T ss_pred hhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcCCCE
Confidence 22211111101111110000 022335799999999999999999999
Q ss_pred EEEcCCCCHHHH-------HHHHHHHh-cCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHhhhHHHHhh
Q 019702 204 IIVDEIGTEAEA-------HACRSIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARRCQKSILER 275 (337)
Q Consensus 204 lilDEp~~~ld~-------~~l~~~~~-~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~~~~~~~~~ 275 (337)
|++||+||.+|+ +.+..+.+ -|.||+++||.|+.+..+||++. +|++|+++..|+..++|.++...+...
T Consensus 163 LL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVa--vm~~G~lvE~G~v~~vF~~Pk~~~t~~ 240 (339)
T COG1135 163 LLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVA--VLDQGRLVEEGTVSEVFANPKHAITQE 240 (339)
T ss_pred EEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhhe--EeeCCEEEEeccHHHhhcCcchHHHHH
Confidence 999999999995 34555654 49999999999999999999999 999999999999999999876655443
No 10
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.98 E-value=2.5e-32 Score=257.90 Aligned_cols=174 Identities=17% Similarity=0.231 Sum_probs=139.2
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCC----------------CeEEEEcCC
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ----------------KRVVIVDTS 160 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~----------------~~i~~v~~~ 160 (337)
++|++++|+... +++++++.++.|+++.|+||||||||||||+|+|+..|+.+ +++.++.|+
T Consensus 6 l~~v~K~yg~~~--~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamVFQ~ 83 (338)
T COG3839 6 LKNVRKSFGSFE--VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMVFQN 83 (338)
T ss_pred EeeeEEEcCCce--eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEEEeCC
Confidence 679999998764 48999999999999999999999999999999999998832 233344443
Q ss_pred cccccCCCCccccccc---------------------------------chhccCCCcchhHHHHHHHHHhhCCcEEEEc
Q 019702 161 NEIGGDGDIPHSAIGT---------------------------------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVD 207 (337)
Q Consensus 161 ~ei~~~~~~~~~~~~~---------------------------------~~~~~~~S~g~k~r~~ia~al~~~P~vlilD 207 (337)
.-+ +||..+.. .++...+||||+||+++|||++.+|+++++|
T Consensus 84 yAL-----yPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~D 158 (338)
T COG3839 84 YAL-----YPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLD 158 (338)
T ss_pred ccc-----cCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEEEec
Confidence 222 23321110 1345567999999999999999999999999
Q ss_pred CCCCHHHHH-------HHHHHHhc-CCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHhhhH-HHHhhcCC
Q 019702 208 EIGTEAEAH-------ACRSIAER-GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARRCQK-SILERKAP 278 (337)
Q Consensus 208 Ep~~~ld~~-------~l~~~~~~-G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~~~~-~~~~~~~~ 278 (337)
||.|++|.+ .+..+.++ |.|+|++|||..++..++|+++ +|++|++.+.|+|.+++..+.. .+....+.
T Consensus 159 EPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~--Vm~~G~i~Q~g~p~ely~~P~n~fVA~FiG~ 236 (338)
T COG3839 159 EPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIV--VMNDGRIQQVGTPLELYERPANLFVAGFIGS 236 (338)
T ss_pred CchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEE--EEeCCeeeecCChHHHhhCccchhhhhhcCC
Confidence 999999953 35555544 8999999999999999999999 9999999999999999987533 34455565
Q ss_pred C
Q 019702 279 P 279 (337)
Q Consensus 279 ~ 279 (337)
|
T Consensus 237 p 237 (338)
T COG3839 237 P 237 (338)
T ss_pred h
Confidence 5
No 11
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=4.5e-32 Score=240.55 Aligned_cols=167 Identities=17% Similarity=0.222 Sum_probs=130.3
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCC---------------------CeEE
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ---------------------KRVV 155 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~---------------------~~i~ 155 (337)
++|++++|+... .+++++++.+++||+++|+||+|||||||||+|+|++.|+.+ .+++
T Consensus 6 ~~nl~k~yp~~~-~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~~iG 84 (258)
T COG3638 6 VKNLSKTYPGGH-QALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRRDIG 84 (258)
T ss_pred EeeeeeecCCCc-eeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHHhce
Confidence 779999995333 249999999999999999999999999999999999988743 1233
Q ss_pred EEcCCcccccC----------------------CCCcccc----------cc----cchhccCCCcchhHHHHHHHHHhh
Q 019702 156 IVDTSNEIGGD----------------------GDIPHSA----------IG----TARRMQVPEPSLQHKVMIEAVENH 199 (337)
Q Consensus 156 ~v~~~~ei~~~----------------------~~~~~~~----------~~----~~~~~~~~S~g~k~r~~ia~al~~ 199 (337)
++.+...+... +.++... ++ ...+.+.+||||+|||+|||||++
T Consensus 85 mIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaIARaL~Q 164 (258)
T COG3638 85 MIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARALVQ 164 (258)
T ss_pred eEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHHHHHHhc
Confidence 33332221100 0000000 00 014556789999999999999999
Q ss_pred CCcEEEEcCCCCHHHH-------HHHHHHH-hcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHH
Q 019702 200 MPEVIIVDEIGTEAEA-------HACRSIA-ERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (337)
Q Consensus 200 ~P~vlilDEp~~~ld~-------~~l~~~~-~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~ 266 (337)
+|++|+.|||++.+|. +.++.+. +.|.|||++.|+.+.+..+|+|++ =+.+|++|++|+++++-.
T Consensus 165 ~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Rii--gl~~G~ivfDg~~~el~~ 237 (258)
T COG3638 165 QPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRII--GLKAGRIVFDGPASELTD 237 (258)
T ss_pred CCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhhe--EecCCcEEEeCChhhhhH
Confidence 9999999999999994 5566665 569999999999999999999999 899999999999988543
No 12
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=2.9e-32 Score=247.60 Aligned_cols=167 Identities=19% Similarity=0.212 Sum_probs=133.4
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCe--------------------EEE
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKR--------------------VVI 156 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~--------------------i~~ 156 (337)
+++++++|.+. ..+++++++.+++|+.++|+||||||||||+++++|++.|+. +. +++
T Consensus 6 ~~~l~~~y~~~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~-G~v~~~g~~~~~~~~~~~~~~~vG~ 83 (235)
T COG1122 6 AENLSFRYPGR-KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTS-GEVLVDGLDTSSEKSLLELRQKVGL 83 (235)
T ss_pred EEEEEEEcCCC-ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCC-CEEEECCeeccchhhHHHhhcceEE
Confidence 56899999776 345999999999999999999999999999999999999984 33 333
Q ss_pred EcCCcccccC--------------CCCccccc-----------cc----chhccCCCcchhHHHHHHHHHhhCCcEEEEc
Q 019702 157 VDTSNEIGGD--------------GDIPHSAI-----------GT----ARRMQVPEPSLQHKVMIEAVENHMPEVIIVD 207 (337)
Q Consensus 157 v~~~~ei~~~--------------~~~~~~~~-----------~~----~~~~~~~S~g~k~r~~ia~al~~~P~vlilD 207 (337)
+.|.++-.+. .+++...+ +. .+....+|||||||++||.+|+++|++|++|
T Consensus 84 VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~iliLD 163 (235)
T COG1122 84 VFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLD 163 (235)
T ss_pred EEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCCCEEEEc
Confidence 3333321110 11111100 00 1334567999999999999999999999999
Q ss_pred CCCCHHHH-------HHHHHHHhc-CCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHh
Q 019702 208 EIGTEAEA-------HACRSIAER-GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (337)
Q Consensus 208 Ep~~~ld~-------~~l~~~~~~-G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~ 267 (337)
|||+++|. +.+.++.++ |.|+|++||+++.+..+||+++ +|++|+++.+|+|.+++.+
T Consensus 164 EPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~--vl~~G~i~~~g~p~~i~~~ 229 (235)
T COG1122 164 EPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVV--VLDDGKILADGDPAEIFND 229 (235)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEE--EEECCEEeecCCHHHHhhh
Confidence 99999994 456677766 6899999999999999999999 9999999999999999875
No 13
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.97 E-value=7.3e-32 Score=240.58 Aligned_cols=165 Identities=18% Similarity=0.234 Sum_probs=131.3
Q ss_pred EeeEEEEECCccc--cchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEc----------------
Q 019702 97 IVGLTCRVGRAVS--GHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD---------------- 158 (337)
Q Consensus 97 i~~l~~r~~~~~~--~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~---------------- 158 (337)
++|+++.|+.... .+++++++.+.+|++++|+|++|||||||+|+|+|+.+|+ .+.|.+-.
T Consensus 6 v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~-~G~I~~~G~~~~~~~~~~~~~~~V 84 (252)
T COG1124 6 VRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPS-SGSILLDGKPLAPKKRAKAFYRPV 84 (252)
T ss_pred EeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCC-CceEEECCcccCccccchhhccce
Confidence 6799999987761 2499999999999999999999999999999999999997 34443322
Q ss_pred ----CCcccccCCCCcccccc--------------------------------cchhccCCCcchhHHHHHHHHHhhCCc
Q 019702 159 ----TSNEIGGDGDIPHSAIG--------------------------------TARRMQVPEPSLQHKVMIEAVENHMPE 202 (337)
Q Consensus 159 ----~~~ei~~~~~~~~~~~~--------------------------------~~~~~~~~S~g~k~r~~ia~al~~~P~ 202 (337)
|.++-.. -|...++ ..++...+||||+||++|||||..+|+
T Consensus 85 QmVFQDp~~SL---nP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~Pk 161 (252)
T COG1124 85 QMVFQDPYSSL---NPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPK 161 (252)
T ss_pred eEEecCCcccc---CcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCC
Confidence 2111000 0000000 013445579999999999999999999
Q ss_pred EEEEcCCCCHHHH-------HHHHHHHh-cCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHh
Q 019702 203 VIIVDEIGTEAEA-------HACRSIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (337)
Q Consensus 203 vlilDEp~~~ld~-------~~l~~~~~-~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~ 267 (337)
+||+|||||++|+ +.+.++++ .|.|.|++|||+..++.+|||++ +|++|++|..++.++++..
T Consensus 162 lLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~--Vm~~G~ivE~~~~~~l~~~ 232 (252)
T COG1124 162 LLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIA--VMDNGQIVEIGPTEELLSH 232 (252)
T ss_pred EEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhhee--eeeCCeEEEeechhhhhcC
Confidence 9999999999994 45666664 48999999999999999999999 9999999999999998865
No 14
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=7.8e-32 Score=242.08 Aligned_cols=152 Identities=14% Similarity=0.176 Sum_probs=117.0
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCC-------------CeEEEEcCCccc
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ-------------KRVVIVDTSNEI 163 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~-------------~~i~~v~~~~ei 163 (337)
++++++.|+...+ ++++++.+.+||+++|+||+|||||||||+|+|+..|+.+ ..+.++.|...+
T Consensus 6 i~~v~~~f~~~~v--l~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~~~L 83 (248)
T COG1116 6 IEGVSKSFGGVEV--LEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQEDAL 83 (248)
T ss_pred EEeeEEEeCceEE--eccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEeccCcc
Confidence 6789999988555 9999999999999999999999999999999999999842 133344443322
Q ss_pred ccCCCCcccc------------------------cc----cchhccCCCcchhHHHHHHHHHhhCCcEEEEcCCCCHHHH
Q 019702 164 GGDGDIPHSA------------------------IG----TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEA 215 (337)
Q Consensus 164 ~~~~~~~~~~------------------------~~----~~~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~~ld~ 215 (337)
.....+.+|. ++ .......+|||||||++|||||+.+|++|++|||++.+|.
T Consensus 84 lPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgALDa 163 (248)
T COG1116 84 LPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDA 163 (248)
T ss_pred cchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCCcchhhH
Confidence 1100000000 00 0133456799999999999999999999999999999994
Q ss_pred -------HHHHH-HHhcCCeEEEEEcCcchhHHhhchHHHHHhcC
Q 019702 216 -------HACRS-IAERGVMLIGTAHGEWLENIIKNPILSDLIGG 252 (337)
Q Consensus 216 -------~~l~~-~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~ 252 (337)
+.+.+ ..+.+.||+++|||.+++-.++||++ +|..
T Consensus 164 lTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRiv--vl~~ 206 (248)
T COG1116 164 LTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVV--VLSN 206 (248)
T ss_pred HHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEE--EecC
Confidence 22333 35679999999999999999999999 8887
No 15
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.97 E-value=1e-31 Score=254.36 Aligned_cols=167 Identities=17% Similarity=0.233 Sum_probs=132.6
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCC-----------------CeEEEEcC
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ-----------------KRVVIVDT 159 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~-----------------~~i~~v~~ 159 (337)
+++++++|+... +++++++.+++|++++|+||||||||||+++|+|+++|+.+ .+++++++
T Consensus 10 i~~l~k~~~~~~--~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~ig~v~q 87 (306)
T PRK13537 10 FRNVEKRYGDKL--VVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGVVPQ 87 (306)
T ss_pred EEeEEEEECCeE--EEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcEEEEec
Confidence 779999998654 49999999999999999999999999999999999998732 23455554
Q ss_pred CcccccCC-------------CCccc----cc-------c----cchhccCCCcchhHHHHHHHHHhhCCcEEEEcCCCC
Q 019702 160 SNEIGGDG-------------DIPHS----AI-------G----TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGT 211 (337)
Q Consensus 160 ~~ei~~~~-------------~~~~~----~~-------~----~~~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~ 211 (337)
...+.... ..+.. .. + ..+....+|+||+||++||+|++++|++|+|||||+
T Consensus 88 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~lllLDEPt~ 167 (306)
T PRK13537 88 FDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTT 167 (306)
T ss_pred cCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCc
Confidence 43221100 00000 00 0 012344579999999999999999999999999999
Q ss_pred HHHH-------HHHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHh
Q 019702 212 EAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (337)
Q Consensus 212 ~ld~-------~~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~ 267 (337)
++|. +.+.+++++|.|||++||++++++.+||+++ ++++|++++.|+++++...
T Consensus 168 gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~--il~~G~i~~~g~~~~l~~~ 228 (306)
T PRK13537 168 GLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLC--VIEEGRKIAEGAPHALIES 228 (306)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEE--EEECCEEEEECCHHHHHhc
Confidence 9995 4456666679999999999999999999999 9999999999999998653
No 16
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=7.7e-32 Score=246.95 Aligned_cols=169 Identities=17% Similarity=0.207 Sum_probs=132.3
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeE--------------------EE
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRV--------------------VI 156 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i--------------------~~ 156 (337)
+++++++|++... ++++++.++.|+.++++||||||||||||+|+|+..|+. ++| ++
T Consensus 5 i~~~~~~~~~~~a--~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~-G~I~~~~~~l~D~~~~~~~~R~VGf 81 (345)
T COG1118 5 INNVKKRFGAFGA--LDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDA-GRIRLNGRVLFDVSNLAVRDRKVGF 81 (345)
T ss_pred ehhhhhhcccccc--cccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCC-ceEEECCEeccchhccchhhcceeE
Confidence 5578888887765 889999999999999999999999999999999999983 333 33
Q ss_pred EcCCcccccCCCCccccc-cc-----------------------------chhccCCCcchhHHHHHHHHHhhCCcEEEE
Q 019702 157 VDTSNEIGGDGDIPHSAI-GT-----------------------------ARRMQVPEPSLQHKVMIEAVENHMPEVIIV 206 (337)
Q Consensus 157 v~~~~ei~~~~~~~~~~~-~~-----------------------------~~~~~~~S~g~k~r~~ia~al~~~P~vlil 206 (337)
+.|...+.....+.++.. +. .+...-+||||+||+|+||||+.+|++|+|
T Consensus 82 vFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~eP~vLLL 161 (345)
T COG1118 82 VFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLL 161 (345)
T ss_pred EEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcCCCeEee
Confidence 333222111111111100 00 022334699999999999999999999999
Q ss_pred cCCCCHHHHHH-------HHHHHhc-CCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHhhhH
Q 019702 207 DEIGTEAEAHA-------CRSIAER-GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARRCQK 270 (337)
Q Consensus 207 DEp~~~ld~~~-------l~~~~~~-G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~~~~ 270 (337)
|||++.+|... +.++.+. |+|++++|||.+++..+||+++ +|++|+|...|+|++++..+..
T Consensus 162 DEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvv--vl~~G~Ieqvg~p~ev~~~P~s 231 (345)
T COG1118 162 DEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVV--VLNQGRIEQVGPPDEVYDHPAS 231 (345)
T ss_pred cCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEE--EecCCeeeeeCCHHHHhcCCCc
Confidence 99999999643 4555544 9999999999999999999999 9999999999999999987543
No 17
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.97 E-value=1.7e-31 Score=251.09 Aligned_cols=167 Identities=19% Similarity=0.290 Sum_probs=132.9
Q ss_pred EeeEEEEEC-CccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCC-----------------CeEEEEc
Q 019702 97 IVGLTCRVG-RAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ-----------------KRVVIVD 158 (337)
Q Consensus 97 i~~l~~r~~-~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~-----------------~~i~~v~ 158 (337)
+.+++++|+ ...+ ++++++.+++|++++|+||||||||||+++|+|++.|+.+ .+++|++
T Consensus 7 ~~~l~k~~~~~~~~--l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~igy~~ 84 (293)
T COG1131 7 VRNLTKKYGGDKTA--LDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGYVP 84 (293)
T ss_pred ecceEEEeCCCCEE--EeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheEEEc
Confidence 468999999 4666 9999999999999999999999999999999999999732 1344444
Q ss_pred CCcccccC-------------CCCc----ccc-------cc--c--chhccCCCcchhHHHHHHHHHhhCCcEEEEcCCC
Q 019702 159 TSNEIGGD-------------GDIP----HSA-------IG--T--ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIG 210 (337)
Q Consensus 159 ~~~ei~~~-------------~~~~----~~~-------~~--~--~~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~ 210 (337)
+...+... ...+ ... ++ . .++...+|+|||||++||.||+++|+++||||||
T Consensus 85 ~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDEPt 164 (293)
T COG1131 85 QEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDEPT 164 (293)
T ss_pred cCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEEEECCCC
Confidence 43322110 0111 000 00 0 1235568999999999999999999999999999
Q ss_pred CHHHH-------HHHHHHHhcC-CeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHh
Q 019702 211 TEAEA-------HACRSIAERG-VMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (337)
Q Consensus 211 ~~ld~-------~~l~~~~~~G-~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~ 267 (337)
+++|. +.+..++++| .||++|||.+++++.+||+++ ++++|++++.|+++++...
T Consensus 165 ~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~--il~~G~~~~~g~~~~l~~~ 227 (293)
T COG1131 165 SGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVI--ILNDGKIIAEGTPEELKEK 227 (293)
T ss_pred cCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEE--EEeCCEEEEeCCHHHHHHh
Confidence 99995 4567777777 899999999999999999999 9999999999999987653
No 18
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.97 E-value=1.9e-30 Score=236.97 Aligned_cols=221 Identities=20% Similarity=0.269 Sum_probs=181.1
Q ss_pred HHHHHhcccCCCCeeEEEEecCCccEEEEeCccCceeccCCCCCHHHHHHHHHHH---------hcc-CCCcceEecCc-
Q 019702 15 LRDRLQNDSKRGQLLEVILDLGRLPEARYLGEFGGKYLRSTEVSVEELEYAQSAV---------GEF-GGDNRAGIEGT- 83 (337)
Q Consensus 15 ~~~~l~~~~~~~~~~ei~l~~g~~~~~~~~g~~~~~~~~~~~~t~~~l~~~~~~~---------~~~-~~~~~~~~~g~- 83 (337)
+.+.|.... +.++|||||.+|.||++|++|++. +++..++|++++..++..+ .+. .-|++++++|.
T Consensus 5 i~~il~~a~-~~~aSDiHL~~G~pp~~Ri~G~l~--~~~~p~lt~~~~~~l~~~il~~~q~~~~~~~~E~Dfs~~~~~~~ 81 (353)
T COG2805 5 IEEILAEAV-KNGASDLHLSAGLPPRIRIDGELR--PINYPPLTAEDVQSLLREILNDDQRKILEENGELDFSYTLPGVA 81 (353)
T ss_pred HHHHHHHHH-hcCCCchhhccCCCceEEecCcee--ecCCCCCCHHHHHHHHHHHhCHHHHHHHHHhcceeEEEecCCcc
Confidence 444444333 378999999999999999999875 6765569999999877654 122 33999999987
Q ss_pred eeEEEEEeeCCCcEeeEEEEECCccc------cchhhhhhcc-cCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEE
Q 019702 84 LHRISAIRSRKGAIVGLTCRVGRAVS------GHIDMVYDLL-HYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVI 156 (337)
Q Consensus 84 ~~rv~~~~~~~g~i~~l~~r~~~~~~------~~~~~l~~~v-~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~ 156 (337)
|||+|+|++++|. ++.+|..+..+ +.++.+...+ .+.+.+++.||+||||||+|.+|.++++.+...+|.+
T Consensus 82 RfRvN~f~qr~~~--a~vlR~Ip~~i~~~e~LglP~i~~~~~~~~~GLILVTGpTGSGKSTTlAamId~iN~~~~~HIlT 159 (353)
T COG2805 82 RFRVNAFKQRGGY--ALVLRLIPSKIPTLEELGLPPIVRELAESPRGLILVTGPTGSGKSTTLAAMIDYINKHKAKHILT 159 (353)
T ss_pred eEEeehhhhcCCc--EEEEeccCccCCCHHHcCCCHHHHHHHhCCCceEEEeCCCCCcHHHHHHHHHHHHhccCCcceEE
Confidence 8999999999999 99999987665 4444444444 3567999999999999999999999999988899999
Q ss_pred EcCCcccccCCCCcccccccchhccCCCcchhHHHHHHHHHhhCCcEEEEcCCCCHHHHHHHHHHHhcCCeEEEEEcCcc
Q 019702 157 VDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRSIAERGVMLIGTAHGEW 236 (337)
Q Consensus 157 v~~~~ei~~~~~~~~~~~~~~~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~~ld~~~l~~~~~~G~tvi~t~H~~~ 236 (337)
++++.|+.+. +......+.++......+.-++.+||+.+||||+++|.+..+.+.+...++++||.|+.|.|..+
T Consensus 160 IEDPIE~vh~-----skkslI~QREvG~dT~sF~~aLraALReDPDVIlvGEmRD~ETi~~ALtAAETGHLV~~TLHT~s 234 (353)
T COG2805 160 IEDPIEYVHE-----SKKSLINQREVGRDTLSFANALRAALREDPDVILVGEMRDLETIRLALTAAETGHLVFGTLHTNS 234 (353)
T ss_pred ecCchHhhhc-----chHhhhhHHHhcccHHHHHHHHHHHhhcCCCEEEEeccccHHHHHHHHHHHhcCCEEEEeccccc
Confidence 9999998542 22233456677788888999999999999999999999999999999999999999999999998
Q ss_pred hhHHhhchHH
Q 019702 237 LENIIKNPIL 246 (337)
Q Consensus 237 ~~~~~~d~v~ 246 (337)
.+.. -+|++
T Consensus 235 A~~t-i~Rii 243 (353)
T COG2805 235 AAKT-IDRII 243 (353)
T ss_pred HHHH-HHHHH
Confidence 6654 44555
No 19
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.97 E-value=9.9e-32 Score=239.06 Aligned_cols=167 Identities=22% Similarity=0.276 Sum_probs=135.9
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEE---------------EcCCc
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVI---------------VDTSN 161 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~---------------v~~~~ 161 (337)
+++++++|+...+ +++++|.+++|++++++|||||||||++|+|.|++.|+ .+.|.+ +++..
T Consensus 5 ie~vtK~Fg~k~a--v~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~-~G~I~~~g~~~~~~~~~rIGyLPEER 81 (300)
T COG4152 5 IEGVTKSFGDKKA--VDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPT-EGEITWNGGPLSQEIKNRIGYLPEER 81 (300)
T ss_pred EecchhccCceee--ecceeeeecCCeEEEeecCCCCCccchHHHHhccCCcc-CceEEEcCcchhhhhhhhcccChhhh
Confidence 6789999998877 99999999999999999999999999999999999997 344443 33222
Q ss_pred ccccC-------------CCCcccccc---------------cchhccCCCcchhHHHHHHHHHhhCCcEEEEcCCCCHH
Q 019702 162 EIGGD-------------GDIPHSAIG---------------TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEA 213 (337)
Q Consensus 162 ei~~~-------------~~~~~~~~~---------------~~~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~~l 213 (337)
.+... .+++...+. ...+.+.+|.|++|++.+-.++.|+|+++|||||+|++
T Consensus 82 GLy~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEPFSGL 161 (300)
T COG4152 82 GLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGL 161 (300)
T ss_pred ccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCCccCC
Confidence 11100 111111000 01344567999999999999999999999999999999
Q ss_pred HH-------HHHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHhh
Q 019702 214 EA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARRC 268 (337)
Q Consensus 214 d~-------~~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~~ 268 (337)
|+ +++.++++.|.|||++||.|+-++.+||+++ ++++|+.|.+|+.+.+.+..
T Consensus 162 DPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~ll--mL~kG~~V~~G~v~~ir~~~ 221 (300)
T COG4152 162 DPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLL--MLKKGQTVLYGTVEDIRRSF 221 (300)
T ss_pred ChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhh--eecCCceEEeccHHHHHHhc
Confidence 94 4567778999999999999999999999999 99999999999999998753
No 20
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.97 E-value=3.3e-31 Score=253.96 Aligned_cols=167 Identities=17% Similarity=0.229 Sum_probs=132.3
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCC-----------------CeEEEEcC
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ-----------------KRVVIVDT 159 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~-----------------~~i~~v~~ 159 (337)
+++++++|+.... ++++++.+++|++++|+||||||||||+++|+|+++|+.+ ..++++++
T Consensus 44 i~nl~k~y~~~~~--l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ig~v~q 121 (340)
T PRK13536 44 LAGVSKSYGDKAV--VNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIGVVPQ 121 (340)
T ss_pred EEEEEEEECCEEE--EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhccEEEEeC
Confidence 7799999987654 9999999999999999999999999999999999998732 12444444
Q ss_pred CcccccCC-------------CCcccc----c-------c----cchhccCCCcchhHHHHHHHHHhhCCcEEEEcCCCC
Q 019702 160 SNEIGGDG-------------DIPHSA----I-------G----TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGT 211 (337)
Q Consensus 160 ~~ei~~~~-------------~~~~~~----~-------~----~~~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~ 211 (337)
...+.... ..+... . + ..+....+|+||+||++||+||+++|++|||||||+
T Consensus 122 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~lLiLDEPt~ 201 (340)
T PRK13536 122 FDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDEPTT 201 (340)
T ss_pred CccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCC
Confidence 33221100 000000 0 0 012334579999999999999999999999999999
Q ss_pred HHHH-------HHHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHh
Q 019702 212 EAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (337)
Q Consensus 212 ~ld~-------~~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~ 267 (337)
++|. +.+.++++.|.|||++||++++++.+||+++ ++++|++++.|+++++...
T Consensus 202 gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~--il~~G~i~~~g~~~~l~~~ 262 (340)
T PRK13536 202 GLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLC--VLEAGRKIAEGRPHALIDE 262 (340)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEE--EEECCEEEEEcCHHHHHhh
Confidence 9995 4466666679999999999999999999999 9999999999999998753
No 21
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=7.5e-31 Score=252.96 Aligned_cols=169 Identities=14% Similarity=0.179 Sum_probs=131.8
Q ss_pred EeeEEEEE-CCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCC----------------CeEEEEcC
Q 019702 97 IVGLTCRV-GRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ----------------KRVVIVDT 159 (337)
Q Consensus 97 i~~l~~r~-~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~----------------~~i~~v~~ 159 (337)
+++++++| +.... ++++++.+++|++++|+|||||||||||++|+|+.+|+.+ +.+.++.+
T Consensus 6 i~~l~~~~~~~~~~--l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q 83 (356)
T PRK11650 6 LQAVRKSYDGKTQV--IKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAMVFQ 83 (356)
T ss_pred EEeEEEEeCCCCEE--EeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeC
Confidence 67999999 55444 9999999999999999999999999999999999998732 23445544
Q ss_pred CcccccCCCCccc-------------c----c-------cc----chhccCCCcchhHHHHHHHHHhhCCcEEEEcCCCC
Q 019702 160 SNEIGGDGDIPHS-------------A----I-------GT----ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGT 211 (337)
Q Consensus 160 ~~ei~~~~~~~~~-------------~----~-------~~----~~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~ 211 (337)
...+.....+.++ . + +. .+....+|+||+||++||+||+.+|++|++|||++
T Consensus 84 ~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~llLLDEP~s 163 (356)
T PRK11650 84 NYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLS 163 (356)
T ss_pred CccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 3322111000000 0 0 00 12334579999999999999999999999999999
Q ss_pred HHHH-------HHHHHHHhc-CCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHhhh
Q 019702 212 EAEA-------HACRSIAER-GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARRCQ 269 (337)
Q Consensus 212 ~ld~-------~~l~~~~~~-G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~~~ 269 (337)
++|. +.+.++.++ |.|+|++||+.+++..+||+++ +|++|++++.|++++++..+.
T Consensus 164 ~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~--vl~~G~i~~~g~~~~~~~~p~ 227 (356)
T PRK11650 164 NLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVV--VMNGGVAEQIGTPVEVYEKPA 227 (356)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE--EEeCCEEEEECCHHHHHhCCc
Confidence 9995 345555544 9999999999999999999999 999999999999999987643
No 22
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.97 E-value=8.4e-31 Score=252.92 Aligned_cols=168 Identities=17% Similarity=0.225 Sum_probs=131.2
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccC--C----------------CeEEEEc
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEF--Q----------------KRVVIVD 158 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~--~----------------~~i~~v~ 158 (337)
+++++++|+... +++++++.+.+|++++|+|||||||||||++|+|+++|+. + +.+.++.
T Consensus 8 ~~~l~~~~~~~~--~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ig~vf 85 (362)
T TIGR03258 8 IDHLRVAYGANT--VLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGLALLF 85 (362)
T ss_pred EEEEEEEECCeE--EEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCCEEEEE
Confidence 668999998654 4999999999999999999999999999999999998874 2 1233443
Q ss_pred CCcccccCCC-------------Ccccc----c-------c----cchhccCCCcchhHHHHHHHHHhhCCcEEEEcCCC
Q 019702 159 TSNEIGGDGD-------------IPHSA----I-------G----TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIG 210 (337)
Q Consensus 159 ~~~ei~~~~~-------------~~~~~----~-------~----~~~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~ 210 (337)
+...+..... .+... + + ..+....+|+||+||++||+||+.+|++|+||||+
T Consensus 86 Q~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~llLLDEP~ 165 (362)
T TIGR03258 86 QNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPL 165 (362)
T ss_pred CCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCcc
Confidence 3322211000 00000 0 0 01234457999999999999999999999999999
Q ss_pred CHHHHH-------HHHHHHhc--CCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHhh
Q 019702 211 TEAEAH-------ACRSIAER--GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARRC 268 (337)
Q Consensus 211 ~~ld~~-------~l~~~~~~--G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~~ 268 (337)
+++|.. .+.++.++ |.|+|++||+.+++..+||+++ +|++|++++.|++++++..+
T Consensus 166 s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~--vl~~G~i~~~g~~~~~~~~p 230 (362)
T TIGR03258 166 SALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAG--IMKDGRLAAHGEPQALYDAP 230 (362)
T ss_pred ccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEE--EEECCEEEEEcCHHHHHhCc
Confidence 999953 34555554 8999999999999999999999 99999999999999998764
No 23
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=9.8e-31 Score=251.60 Aligned_cols=169 Identities=17% Similarity=0.230 Sum_probs=131.8
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCC----------------CeEEEEcCC
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ----------------KRVVIVDTS 160 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~----------------~~i~~v~~~ 160 (337)
+++++++|+.... ++++++.+++|++++|+|||||||||||++|+|+++|+.+ +++.++.+.
T Consensus 9 ~~~l~~~~~~~~~--l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~ 86 (351)
T PRK11432 9 LKNITKRFGSNTV--IDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDICMVFQS 86 (351)
T ss_pred EEeEEEEECCeEE--EeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCC
Confidence 6799999986544 9999999999999999999999999999999999998732 234444443
Q ss_pred cccccCCCCccc-------------cc-----------c----cchhccCCCcchhHHHHHHHHHhhCCcEEEEcCCCCH
Q 019702 161 NEIGGDGDIPHS-------------AI-----------G----TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTE 212 (337)
Q Consensus 161 ~ei~~~~~~~~~-------------~~-----------~----~~~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~~ 212 (337)
..+.....+.++ .. + ..+....+|+||+||++||+||+.+|++|+||||+++
T Consensus 87 ~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~lLLLDEP~s~ 166 (351)
T PRK11432 87 YALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSN 166 (351)
T ss_pred cccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCccc
Confidence 222110000000 00 0 0123445799999999999999999999999999999
Q ss_pred HHHH-------HHHHHHh-cCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHhhh
Q 019702 213 AEAH-------ACRSIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARRCQ 269 (337)
Q Consensus 213 ld~~-------~l~~~~~-~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~~~ 269 (337)
+|.. .+..+.+ .|.|+|++||+.+++..+||+++ +|++|+++..|+|++++..+.
T Consensus 167 LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~--vm~~G~i~~~g~~~~~~~~p~ 229 (351)
T PRK11432 167 LDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVI--VMNKGKIMQIGSPQELYRQPA 229 (351)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEE--EEECCEEEEEcCHHHHHhCCC
Confidence 9953 3444544 48999999999999999999999 999999999999999987653
No 24
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.97 E-value=1.2e-30 Score=250.11 Aligned_cols=170 Identities=14% Similarity=0.183 Sum_probs=130.5
Q ss_pred EeeEEEEECCc--cccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCC---------------------Ce
Q 019702 97 IVGLTCRVGRA--VSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ---------------------KR 153 (337)
Q Consensus 97 i~~l~~r~~~~--~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~---------------------~~ 153 (337)
+++++++|... ...+++++++.+++|++++|+||||||||||+++|+|+++|+.+ ++
T Consensus 4 ~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r~~ 83 (343)
T TIGR02314 4 LSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKARRQ 83 (343)
T ss_pred EEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhcC
Confidence 67999999631 12359999999999999999999999999999999999998732 12
Q ss_pred EEEEcCCcccccCCCC-------------cccc-----------ccc----chhccCCCcchhHHHHHHHHHhhCCcEEE
Q 019702 154 VVIVDTSNEIGGDGDI-------------PHSA-----------IGT----ARRMQVPEPSLQHKVMIEAVENHMPEVII 205 (337)
Q Consensus 154 i~~v~~~~ei~~~~~~-------------~~~~-----------~~~----~~~~~~~S~g~k~r~~ia~al~~~P~vli 205 (337)
+.++++...+.....+ +... ++. .+....+|+||+||++||+||+.+|++|+
T Consensus 84 Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~P~iLL 163 (343)
T TIGR02314 84 IGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLL 163 (343)
T ss_pred EEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHhCCCEEE
Confidence 3444333221110000 0000 000 02234579999999999999999999999
Q ss_pred EcCCCCHHHH-------HHHHHHHhc-CCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHhh
Q 019702 206 VDEIGTEAEA-------HACRSIAER-GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARRC 268 (337)
Q Consensus 206 lDEp~~~ld~-------~~l~~~~~~-G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~~ 268 (337)
+||||+++|. +.+.++.++ |.|||++||+++.+..+||+++ +|++|++++.|++++++..+
T Consensus 164 lDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~--vl~~G~iv~~g~~~~v~~~p 232 (343)
T TIGR02314 164 CDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVA--VISNGELIEQGTVSEIFSHP 232 (343)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE--EEECCEEEEEcCHHHHHcCC
Confidence 9999999995 345666554 9999999999999999999999 99999999999999998653
No 25
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.97 E-value=1.2e-30 Score=251.17 Aligned_cols=169 Identities=18% Similarity=0.205 Sum_probs=131.6
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCC----------------CeEEEEcCC
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ----------------KRVVIVDTS 160 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~----------------~~i~~v~~~ 160 (337)
+++++++|+.... ++++++.+++|++++|+|||||||||||++|+|+.+|+.+ +.++++++.
T Consensus 7 ~~~l~~~~~~~~~--l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~v~Q~ 84 (353)
T TIGR03265 7 IDNIRKRFGAFTA--LKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGIVFQS 84 (353)
T ss_pred EEEEEEEeCCeEE--EEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCC
Confidence 6799999986544 8999999999999999999999999999999999998732 224444443
Q ss_pred cccccCCCCcccc-----------------c-------c----cchhccCCCcchhHHHHHHHHHhhCCcEEEEcCCCCH
Q 019702 161 NEIGGDGDIPHSA-----------------I-------G----TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTE 212 (337)
Q Consensus 161 ~ei~~~~~~~~~~-----------------~-------~----~~~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~~ 212 (337)
..+.....+.++. + + ..+....+|+||+||++||+||+.+|++|+||||+++
T Consensus 85 ~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~llLLDEP~s~ 164 (353)
T TIGR03265 85 YALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSA 164 (353)
T ss_pred cccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence 3221100000000 0 0 0123345799999999999999999999999999999
Q ss_pred HHHH-------HHHHHHh-cCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHhhh
Q 019702 213 AEAH-------ACRSIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARRCQ 269 (337)
Q Consensus 213 ld~~-------~l~~~~~-~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~~~ 269 (337)
+|.. .+.++.+ .|.|+|++||+.+++..+||+++ +|++|++++.|+|++++..+.
T Consensus 165 LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~--vl~~G~i~~~g~~~~~~~~p~ 227 (353)
T TIGR03265 165 LDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIV--VMNHGVIEQVGTPQEIYRHPA 227 (353)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEE--EEECCEEEEEcCHHHHHhCCC
Confidence 9953 3445554 48999999999999999999999 999999999999999997643
No 26
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=2.3e-30 Score=226.14 Aligned_cols=166 Identities=19% Similarity=0.252 Sum_probs=133.5
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEE-------------------
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIV------------------- 157 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v------------------- 157 (337)
.+|++++...... ++++++.+.+||+++|+|||||||||||+.|+|.+.|+ .+.+.+.
T Consensus 4 a~nls~~~~Gr~l--l~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~-~G~v~~~g~~l~~~~~~~lA~~raVl 80 (259)
T COG4559 4 AENLSYSLAGRRL--LDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPD-SGEVTLNGVPLNSWPPEELARHRAVL 80 (259)
T ss_pred eeeeEEEeeccee--ccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCC-CCeEeeCCcChhhCCHHHHHHHhhhc
Confidence 4588998877766 99999999999999999999999999999999999987 3444332
Q ss_pred cCCcccccC---------CCCcccccc---------------------cchhccCCCcchhHHHHHHHHHhh------CC
Q 019702 158 DTSNEIGGD---------GDIPHSAIG---------------------TARRMQVPEPSLQHKVMIEAVENH------MP 201 (337)
Q Consensus 158 ~~~~ei~~~---------~~~~~~~~~---------------------~~~~~~~~S~g~k~r~~ia~al~~------~P 201 (337)
++...++|. +.+|+..-. ..+.+..+|||++||+.+||+|++ +|
T Consensus 81 pQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl~~~v~~~ 160 (259)
T COG4559 81 PQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSG 160 (259)
T ss_pred ccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHccCCCCCC
Confidence 233333321 222221100 013455689999999999999986 45
Q ss_pred cEEEEcCCCCHHHH-------HHHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHh
Q 019702 202 EVIIVDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (337)
Q Consensus 202 ~vlilDEp~~~ld~-------~~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~ 267 (337)
++|+|||||+.+|+ .+.++++..|..|+.+.||++++..+||+++ +|++|++++.|+|+++++.
T Consensus 161 r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~YaDriv--ll~~Grv~a~g~p~~vlt~ 231 (259)
T COG4559 161 RWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIV--LLHQGRVIASGSPQDVLTD 231 (259)
T ss_pred ceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHhhheee--eeeCCeEeecCCHHHhcCH
Confidence 69999999999994 5677888889999999999999999999999 9999999999999999874
No 27
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.97 E-value=2e-30 Score=245.27 Aligned_cols=167 Identities=17% Similarity=0.244 Sum_probs=130.4
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCC-----------------CeEEEEcC
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ-----------------KRVVIVDT 159 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~-----------------~~i~~v~~ 159 (337)
+++++++|+...+ ++++++.+++|++++|+||||||||||+++|+|+++|+.+ ..+.++++
T Consensus 7 ~~~l~~~~~~~~~--l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q 84 (303)
T TIGR01288 7 LVGVSKSYGDKVV--VNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIGVVPQ 84 (303)
T ss_pred EEeEEEEeCCeEE--EcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcEEEEec
Confidence 6799999986544 9999999999999999999999999999999999988632 12444444
Q ss_pred CcccccCC-------------CCcccc----c-------cc----chhccCCCcchhHHHHHHHHHhhCCcEEEEcCCCC
Q 019702 160 SNEIGGDG-------------DIPHSA----I-------GT----ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGT 211 (337)
Q Consensus 160 ~~ei~~~~-------------~~~~~~----~-------~~----~~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~ 211 (337)
...+.... ...... + +. .+....+|+||+||++||+|++.+|++|||||||+
T Consensus 85 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~ 164 (303)
T TIGR01288 85 FDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLILDEPTT 164 (303)
T ss_pred cccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 32221100 000000 0 00 12234579999999999999999999999999999
Q ss_pred HHHH-------HHHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHh
Q 019702 212 EAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (337)
Q Consensus 212 ~ld~-------~~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~ 267 (337)
++|. +.+.+++++|.|||++||+.+++..+||+++ ++++|+++..|+++++...
T Consensus 165 gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~--~l~~G~i~~~g~~~~~~~~ 225 (303)
T TIGR01288 165 GLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLC--VLESGRKIAEGRPHALIDE 225 (303)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEE--EEECCEEEEEcCHHHHHhh
Confidence 9995 3455666679999999999999999999999 9999999999999988653
No 28
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=3.4e-30 Score=225.38 Aligned_cols=170 Identities=14% Similarity=0.122 Sum_probs=129.1
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCC-------------------------
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ------------------------- 151 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~------------------------- 151 (337)
++++++-|+...+ ++++++.++++++++++||+|||||||||+++++.....+
T Consensus 10 ~~~l~~yYg~~~a--L~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lR 87 (253)
T COG1117 10 VRDLNLYYGDKHA--LKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELR 87 (253)
T ss_pred ecceeEEECchhh--hccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHH
Confidence 5689999997776 9999999999999999999999999999999998754321
Q ss_pred CeEEEEcCCcccccC------------CCCccccccc-----c--------------hhccCCCcchhHHHHHHHHHhhC
Q 019702 152 KRVVIVDTSNEIGGD------------GDIPHSAIGT-----A--------------RRMQVPEPSLQHKVMIEAVENHM 200 (337)
Q Consensus 152 ~~i~~v~~~~ei~~~------------~~~~~~~~~~-----~--------------~~~~~~S~g~k~r~~ia~al~~~ 200 (337)
++|+.+.|.+.-... .++....+.. + ....-+||||+||++||||++.+
T Consensus 88 r~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARalAv~ 167 (253)
T COG1117 88 RRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALAVK 167 (253)
T ss_pred HHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHHHhcC
Confidence 222333332211000 0000000000 0 11123699999999999999999
Q ss_pred CcEEEEcCCCCHHHH-------HHHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHhhhHH
Q 019702 201 PEVIIVDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARRCQKS 271 (337)
Q Consensus 201 P~vlilDEp~~~ld~-------~~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~~~~~ 271 (337)
|+||++|||||++|. +++.+++ ...||+++||+|.-+.+++|+.. ++..|++|+.|+.+++|.++...
T Consensus 168 PeVlLmDEPtSALDPIsT~kIEeLi~eLk-~~yTIviVTHnmqQAaRvSD~ta--Ff~~G~LvE~g~T~~iF~~P~~~ 242 (253)
T COG1117 168 PEVLLMDEPTSALDPISTLKIEELITELK-KKYTIVIVTHNMQQAARVSDYTA--FFYLGELVEFGPTDKIFTNPKHK 242 (253)
T ss_pred CcEEEecCcccccCchhHHHHHHHHHHHH-hccEEEEEeCCHHHHHHHhHhhh--hhcccEEEEEcCHHhhhcCccHH
Confidence 999999999999994 3455555 56899999999999999999999 99999999999999999876544
No 29
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=2.1e-30 Score=236.19 Aligned_cols=165 Identities=19% Similarity=0.203 Sum_probs=127.0
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCe----------------------E
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKR----------------------V 154 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~----------------------i 154 (337)
+++++++|+... .++++++.+++|++++|+||||||||||+++|+|+++|+. +. +
T Consensus 3 ~~~l~~~~~~~~--~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~-G~i~~~g~~~~~~~~~~~~~~~~~i 79 (235)
T cd03261 3 LRGLTKSFGGRT--VLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDS-GEVLIDGEDISGLSEAELYRLRRRM 79 (235)
T ss_pred EEEEEEEECCEE--EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc-eEEEECCEEccccChhhHHHHhcce
Confidence 578999997544 4999999999999999999999999999999999998863 33 3
Q ss_pred EEEcCCcccccCCC--------------Ccccc----c-------cc----chhccCCCcchhHHHHHHHHHhhCCcEEE
Q 019702 155 VIVDTSNEIGGDGD--------------IPHSA----I-------GT----ARRMQVPEPSLQHKVMIEAVENHMPEVII 205 (337)
Q Consensus 155 ~~v~~~~ei~~~~~--------------~~~~~----~-------~~----~~~~~~~S~g~k~r~~ia~al~~~P~vli 205 (337)
.++++...+..... ..... + +. .+....+|+||+||++||+|++.+|++||
T Consensus 80 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~~p~lll 159 (235)
T cd03261 80 GMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLL 159 (235)
T ss_pred EEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 33333221110000 00000 0 00 02233479999999999999999999999
Q ss_pred EcCCCCHHHH-------HHHHHHHh-cCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHH
Q 019702 206 VDEIGTEAEA-------HACRSIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (337)
Q Consensus 206 lDEp~~~ld~-------~~l~~~~~-~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~ 266 (337)
+||||+++|. +.+.++.+ .|.|||++||+.+++..+||+++ ++++|+++..|+++++..
T Consensus 160 lDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~--~l~~G~i~~~g~~~~~~~ 226 (235)
T cd03261 160 YDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIA--VLYDGKIVAEGTPEELRA 226 (235)
T ss_pred ecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEE--EEECCeEEEecCHHHHcC
Confidence 9999999995 34555555 48999999999999999999999 999999999999988764
No 30
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.97 E-value=2.3e-30 Score=252.51 Aligned_cols=167 Identities=20% Similarity=0.292 Sum_probs=131.8
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCC------------------CeEEEEc
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ------------------KRVVIVD 158 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~------------------~~i~~v~ 158 (337)
+++++++|+...+ ++++++.+++|++++|+|||||||||||++|+|+++|..+ +++.++.
T Consensus 6 ~~nls~~y~~~~v--L~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig~v~ 83 (402)
T PRK09536 6 VSDLSVEFGDTTV--LDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVASVP 83 (402)
T ss_pred EeeEEEEECCEEE--EEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceEEEc
Confidence 6699999987555 9999999999999999999999999999999999988732 2345554
Q ss_pred CCcccccC---------CCCcc---------c---cccc-----------chhccCCCcchhHHHHHHHHHhhCCcEEEE
Q 019702 159 TSNEIGGD---------GDIPH---------S---AIGT-----------ARRMQVPEPSLQHKVMIEAVENHMPEVIIV 206 (337)
Q Consensus 159 ~~~ei~~~---------~~~~~---------~---~~~~-----------~~~~~~~S~g~k~r~~ia~al~~~P~vlil 206 (337)
+...+.+. ...++ . .+.. .+....+|+||+||++||+||+++|++|||
T Consensus 84 q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~~P~iLLL 163 (402)
T PRK09536 84 QDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLL 163 (402)
T ss_pred cCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 44332111 00000 0 0000 022345799999999999999999999999
Q ss_pred cCCCCHHHH-------HHHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHh
Q 019702 207 DEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (337)
Q Consensus 207 DEp~~~ld~-------~~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~ 267 (337)
||||+++|. +.+.++.+.|.|||+++|+++++..+||+++ ++++|+++..|++++++..
T Consensus 164 DEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii--~l~~G~iv~~G~~~ev~~~ 229 (402)
T PRK09536 164 DEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELV--LLADGRVRAAGPPADVLTA 229 (402)
T ss_pred ECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEE--EEECCEEEEecCHHHHhCc
Confidence 999999995 3456666678999999999999999999999 9999999999999987653
No 31
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=9e-30 Score=240.84 Aligned_cols=168 Identities=14% Similarity=0.148 Sum_probs=129.5
Q ss_pred EeeEEEEECCcc---ccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEE------------------
Q 019702 97 IVGLTCRVGRAV---SGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVV------------------ 155 (337)
Q Consensus 97 i~~l~~r~~~~~---~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~------------------ 155 (337)
+++++++|+... ..+++++++.+++|++++|+||||||||||+++|+|+++|+. +.|.
T Consensus 5 ~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~-G~i~~~g~~~~~~~~~~~~~~~ 83 (305)
T PRK13651 5 VKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDT-GTIEWIFKDEKNKKKTKEKEKV 83 (305)
T ss_pred EEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCC-cEEEEeceeccccccccccccc
Confidence 679999997532 135999999999999999999999999999999999998873 3332
Q ss_pred -------------------------EEcCCcccccC-C-------------CCcccc-------------cc---cchhc
Q 019702 156 -------------------------IVDTSNEIGGD-G-------------DIPHSA-------------IG---TARRM 180 (337)
Q Consensus 156 -------------------------~v~~~~ei~~~-~-------------~~~~~~-------------~~---~~~~~ 180 (337)
++++..+.... . ..+... +. ..+..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~ 163 (305)
T PRK13651 84 LEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQRSP 163 (305)
T ss_pred ccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCh
Confidence 33332110000 0 000000 00 00223
Q ss_pred cCCCcchhHHHHHHHHHhhCCcEEEEcCCCCHHHH-------HHHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCc
Q 019702 181 QVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGV 253 (337)
Q Consensus 181 ~~~S~g~k~r~~ia~al~~~P~vlilDEp~~~ld~-------~~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G 253 (337)
..+|+||+||++||+||+++|++||+||||+++|. +.+.++++.|.|||++||+++.+..+||+++ +|++|
T Consensus 164 ~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~adrv~--vl~~G 241 (305)
T PRK13651 164 FELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTI--FFKDG 241 (305)
T ss_pred hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHhCCEEE--EEECC
Confidence 44799999999999999999999999999999995 3455566679999999999999999999999 99999
Q ss_pred eEEEecCHHHHHHh
Q 019702 254 DTVTLGDEEARARR 267 (337)
Q Consensus 254 ~iv~~g~~~~~~~~ 267 (337)
++++.|++++++..
T Consensus 242 ~i~~~g~~~~~~~~ 255 (305)
T PRK13651 242 KIIKDGDTYDILSD 255 (305)
T ss_pred EEEEECCHHHHhcC
Confidence 99999999998865
No 32
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.97 E-value=3e-30 Score=250.03 Aligned_cols=169 Identities=18% Similarity=0.192 Sum_probs=131.6
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCC----------------CeEEEEcCC
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ----------------KRVVIVDTS 160 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~----------------~~i~~v~~~ 160 (337)
+++++++|+.... ++++++.+++|++++|+|||||||||||++|+|+++|+.+ ..+.++.+.
T Consensus 6 i~~l~~~~~~~~v--l~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~v~Q~ 83 (369)
T PRK11000 6 LRNVTKAYGDVVI--SKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMVFQS 83 (369)
T ss_pred EEEEEEEeCCeEE--EeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEEEeCC
Confidence 6799999976544 9999999999999999999999999999999999988732 124444443
Q ss_pred cccccCCC-------------Ccccc----c-------cc----chhccCCCcchhHHHHHHHHHhhCCcEEEEcCCCCH
Q 019702 161 NEIGGDGD-------------IPHSA----I-------GT----ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTE 212 (337)
Q Consensus 161 ~ei~~~~~-------------~~~~~----~-------~~----~~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~~ 212 (337)
..+..... .+... + +. .+....+|+||+||++||+||+.+|++|+||||+++
T Consensus 84 ~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLDEPts~ 163 (369)
T PRK11000 84 YALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSN 163 (369)
T ss_pred cccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 32211000 00000 0 00 123345799999999999999999999999999999
Q ss_pred HHHH-------HHHHHHh-cCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHhhh
Q 019702 213 AEAH-------ACRSIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARRCQ 269 (337)
Q Consensus 213 ld~~-------~l~~~~~-~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~~~ 269 (337)
+|.. .+.++.+ .|.|+|++||+.+++..+||+++ +|++|+++..|++++++..+.
T Consensus 164 LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~--vl~~G~i~~~g~~~~i~~~p~ 226 (369)
T PRK11000 164 LDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIV--VLDAGRVAQVGKPLELYHYPA 226 (369)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEE--EEECCEEEEEcCHHHHHhCcc
Confidence 9953 3555554 48999999999999999999999 999999999999999987543
No 33
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.97 E-value=4.1e-30 Score=247.55 Aligned_cols=168 Identities=15% Similarity=0.159 Sum_probs=131.6
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCC----------------CeEEEEcCC
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ----------------KRVVIVDTS 160 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~----------------~~i~~v~~~ 160 (337)
+++++++|+... .++++++.+++|++++|+|||||||||||++|+|+++|+.+ +.+.++.+.
T Consensus 5 i~~l~~~~~~~~--~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~v~Q~ 82 (353)
T PRK10851 5 IANIKKSFGRTQ--VLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFVFQH 82 (353)
T ss_pred EEEEEEEeCCeE--EEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEEEecC
Confidence 679999998654 49999999999999999999999999999999999988732 134444443
Q ss_pred cccccCC--------C---------Cccc----ccc-c----------chhccCCCcchhHHHHHHHHHhhCCcEEEEcC
Q 019702 161 NEIGGDG--------D---------IPHS----AIG-T----------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDE 208 (337)
Q Consensus 161 ~ei~~~~--------~---------~~~~----~~~-~----------~~~~~~~S~g~k~r~~ia~al~~~P~vlilDE 208 (337)
..+.... . .... .+. . .+....+|+||+||++||+||+.+|++|++||
T Consensus 83 ~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~P~llLLDE 162 (353)
T PRK10851 83 YALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDE 162 (353)
T ss_pred cccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 2221100 0 0000 000 0 12334579999999999999999999999999
Q ss_pred CCCHHHH-------HHHHHHHhc-CCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHhh
Q 019702 209 IGTEAEA-------HACRSIAER-GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARRC 268 (337)
Q Consensus 209 p~~~ld~-------~~l~~~~~~-G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~~ 268 (337)
|++++|. +.+.++.++ |.|+|++||+.+++..+||+++ +|++|++++.|++++++..+
T Consensus 163 P~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~--vl~~G~i~~~g~~~~i~~~p 228 (353)
T PRK10851 163 PFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVV--VMSQGNIEQAGTPDQVWREP 228 (353)
T ss_pred CCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE--EEECCEEEEEcCHHHHHhCc
Confidence 9999995 345555554 8999999999999999999999 99999999999999998764
No 34
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.96 E-value=4.5e-30 Score=248.78 Aligned_cols=169 Identities=17% Similarity=0.207 Sum_probs=131.9
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCC----------------CeEEEEcCC
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ----------------KRVVIVDTS 160 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~----------------~~i~~v~~~ 160 (337)
+++++++|+.... ++++++.+++|++++|+|||||||||||++|+|+++|+.+ +.+.++.+.
T Consensus 17 l~~l~~~~~~~~~--l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~ 94 (375)
T PRK09452 17 LRGISKSFDGKEV--ISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHVNTVFQS 94 (375)
T ss_pred EEEEEEEECCeEE--EeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEecC
Confidence 6789999976544 8999999999999999999999999999999999998732 234444443
Q ss_pred cccccCCCC-------------cccc----ccc-----------chhccCCCcchhHHHHHHHHHhhCCcEEEEcCCCCH
Q 019702 161 NEIGGDGDI-------------PHSA----IGT-----------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTE 212 (337)
Q Consensus 161 ~ei~~~~~~-------------~~~~----~~~-----------~~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~~ 212 (337)
..+.....+ +... +.. .+....+|+||+||++||+||+.+|++|++|||+++
T Consensus 95 ~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~llLLDEP~s~ 174 (375)
T PRK09452 95 YALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSA 174 (375)
T ss_pred cccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCc
Confidence 322110000 0000 000 123345799999999999999999999999999999
Q ss_pred HHH-------HHHHHHHh-cCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHhhh
Q 019702 213 AEA-------HACRSIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARRCQ 269 (337)
Q Consensus 213 ld~-------~~l~~~~~-~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~~~ 269 (337)
+|. +.+..+.+ .|.|+|++||+.+++..+||+++ +|++|++++.|++++++.++.
T Consensus 175 LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~--vl~~G~i~~~g~~~~i~~~p~ 237 (375)
T PRK09452 175 LDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIV--VMRDGRIEQDGTPREIYEEPK 237 (375)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE--EEECCEEEEEcCHHHHHhCcc
Confidence 995 33555554 49999999999999999999999 999999999999999988653
No 35
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=5.4e-30 Score=231.23 Aligned_cols=164 Identities=19% Similarity=0.257 Sum_probs=125.3
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCC-----------------eEEEEcC
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK-----------------RVVIVDT 159 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~-----------------~i~~v~~ 159 (337)
+++++++|+... .++++++.+.+|++++|+||||||||||+++|+|+++|+.+. ++.++.+
T Consensus 3 ~~~~~~~~~~~~--il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q 80 (220)
T cd03265 3 VENLVKKYGDFE--AVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVFQ 80 (220)
T ss_pred EEEEEEEECCEE--eeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEEecC
Confidence 678999997654 499999999999999999999999999999999999887321 2334433
Q ss_pred CcccccCC-------------CCccc----c-------ccc----chhccCCCcchhHHHHHHHHHhhCCcEEEEcCCCC
Q 019702 160 SNEIGGDG-------------DIPHS----A-------IGT----ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGT 211 (337)
Q Consensus 160 ~~ei~~~~-------------~~~~~----~-------~~~----~~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~ 211 (337)
...+.... ..... . ++. ......+|+||+||++||+|++.+|++|++||||+
T Consensus 81 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~llllDEPt~ 160 (220)
T cd03265 81 DLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTI 160 (220)
T ss_pred CccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 32211100 00000 0 000 02234579999999999999999999999999999
Q ss_pred HHHHH-------HHHHHHhc-CCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHH
Q 019702 212 EAEAH-------ACRSIAER-GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEAR 264 (337)
Q Consensus 212 ~ld~~-------~l~~~~~~-G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~ 264 (337)
++|.. .+.++.++ |.+||++||+.+++..+||+++ ++.+|+++..++++++
T Consensus 161 ~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~--~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 161 GLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVA--IIDHGRIIAEGTPEEL 219 (220)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE--EEeCCEEEEeCChHHc
Confidence 99953 35555555 8999999999999999999999 9999999999887753
No 36
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.96 E-value=8.8e-31 Score=233.80 Aligned_cols=167 Identities=19% Similarity=0.241 Sum_probs=132.4
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEcCCcc------cc------
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNE------IG------ 164 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~~~~e------i~------ 164 (337)
+++++++|+.-.. ++++++.+++|++++|+|||||||||++++|+|+++|+ .+.|.+-.+... +.
T Consensus 7 v~~l~k~FGGl~A--l~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~-~G~v~~~G~~it~l~p~~iar~Gi~R 83 (250)
T COG0411 7 VRGLSKRFGGLTA--VNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPS-SGTVIFRGRDITGLPPHRIARLGIAR 83 (250)
T ss_pred eccceeecCCEEE--EeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCC-CceEEECCcccCCCCHHHHHhcccee
Confidence 5689999998877 99999999999999999999999999999999999998 455554322110 00
Q ss_pred -c--CCCCcccc------c-----------------------------------cc----chhccCCCcchhHHHHHHHH
Q 019702 165 -G--DGDIPHSA------I-----------------------------------GT----ARRMQVPEPSLQHKVMIEAV 196 (337)
Q Consensus 165 -~--~~~~~~~~------~-----------------------------------~~----~~~~~~~S~g~k~r~~ia~a 196 (337)
| ...+++.. + +. .+....+|.|+++++.||+|
T Consensus 84 TFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~LEIArA 163 (250)
T COG0411 84 TFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRLEIARA 163 (250)
T ss_pred ecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHHHHHHHH
Confidence 0 00000000 0 00 02234569999999999999
Q ss_pred HhhCCcEEEEcCCCCHHH-------HHHHHHHHh-cCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHhh
Q 019702 197 ENHMPEVIIVDEIGTEAE-------AHACRSIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARRC 268 (337)
Q Consensus 197 l~~~P~vlilDEp~~~ld-------~~~l~~~~~-~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~~ 268 (337)
|+.+|++|+||||.+++. .+.+.++.+ .|.||+++.|+|+.+..+||+++ +|+.|++++.|+|+++.+++
T Consensus 164 La~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~--Vl~~G~~IAeG~P~eV~~dp 241 (250)
T COG0411 164 LATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIV--VLNYGEVIAEGTPEEVRNNP 241 (250)
T ss_pred HhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEE--eccCCcCcccCCHHHHhcCH
Confidence 999999999999999866 355677776 47999999999999999999999 99999999999999998763
No 37
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.96 E-value=4.2e-30 Score=230.18 Aligned_cols=156 Identities=17% Similarity=0.189 Sum_probs=116.3
Q ss_pred EeeEEEEECCcc--ccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCC----------------------C
Q 019702 97 IVGLTCRVGRAV--SGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ----------------------K 152 (337)
Q Consensus 97 i~~l~~r~~~~~--~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~----------------------~ 152 (337)
++++++.|.... ..+++++++.+++|++++|+||+||||||||++|.|+.+|+.+ .
T Consensus 4 ~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R~~ 83 (226)
T COG1136 4 LKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLRRK 83 (226)
T ss_pred EeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHHHH
Confidence 457888886432 3469999999999999999999999999999999999999732 2
Q ss_pred eEEEEcCCcccccCC-------------CCccc-----------cccc----c-hhccCCCcchhHHHHHHHHHhhCCcE
Q 019702 153 RVVIVDTSNEIGGDG-------------DIPHS-----------AIGT----A-RRMQVPEPSLQHKVMIEAVENHMPEV 203 (337)
Q Consensus 153 ~i~~v~~~~ei~~~~-------------~~~~~-----------~~~~----~-~~~~~~S~g~k~r~~ia~al~~~P~v 203 (337)
+|+++.|.-.+.... ..+.. .++. . ..+..+|||||||+||||||+.+|++
T Consensus 84 ~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~i 163 (226)
T COG1136 84 KIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKI 163 (226)
T ss_pred hEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCe
Confidence 234444332221110 00100 0011 0 23456899999999999999999999
Q ss_pred EEEcCCCCHHHH-------HHHHHHHh-cCCeEEEEEcCcchhHHhhchHHHHHhcCceE
Q 019702 204 IIVDEIGTEAEA-------HACRSIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDT 255 (337)
Q Consensus 204 lilDEp~~~ld~-------~~l~~~~~-~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~i 255 (337)
|+.||||+++|. +.+.++.+ .|.|+|++|||...+ .+|||++ .+.+|++
T Consensus 164 ilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA-~~~dr~i--~l~dG~~ 220 (226)
T COG1136 164 ILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELA-KYADRVI--ELKDGKI 220 (226)
T ss_pred EEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHH-HhCCEEE--EEeCCee
Confidence 999999999994 45666664 499999999999866 5999999 7888873
No 38
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=7.1e-30 Score=245.33 Aligned_cols=169 Identities=15% Similarity=0.181 Sum_probs=129.2
Q ss_pred EeeEEEEECC--ccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCC---------------------Ce
Q 019702 97 IVGLTCRVGR--AVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ---------------------KR 153 (337)
Q Consensus 97 i~~l~~r~~~--~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~---------------------~~ 153 (337)
+++++++|+. .....++++++.+++|++++|+||||||||||+++|+|+++|+.+ .+
T Consensus 4 i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~ 83 (343)
T PRK11153 4 LKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKARRQ 83 (343)
T ss_pred EEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHhcC
Confidence 6789999972 122359999999999999999999999999999999999988732 12
Q ss_pred EEEEcCCcccccCCC-------------Ccccc----c-------cc----chhccCCCcchhHHHHHHHHHhhCCcEEE
Q 019702 154 VVIVDTSNEIGGDGD-------------IPHSA----I-------GT----ARRMQVPEPSLQHKVMIEAVENHMPEVII 205 (337)
Q Consensus 154 i~~v~~~~ei~~~~~-------------~~~~~----~-------~~----~~~~~~~S~g~k~r~~ia~al~~~P~vli 205 (337)
+.++++...+..... .+... + +. .+....+|+||+||++||+||+++|++|+
T Consensus 84 ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~iLl 163 (343)
T PRK11153 84 IGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVLL 163 (343)
T ss_pred EEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence 444443322211000 00000 0 00 02234579999999999999999999999
Q ss_pred EcCCCCHHHH-------HHHHHHHh-cCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHh
Q 019702 206 VDEIGTEAEA-------HACRSIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (337)
Q Consensus 206 lDEp~~~ld~-------~~l~~~~~-~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~ 267 (337)
+||||+++|. +.+.++.+ .|.|||++||+++++..+||+++ +|++|+++..|++++++..
T Consensus 164 LDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~--~l~~G~i~~~g~~~~~~~~ 231 (343)
T PRK11153 164 CDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVA--VIDAGRLVEQGTVSEVFSH 231 (343)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE--EEECCEEEEEcCHHHHHhC
Confidence 9999999995 34555554 48999999999999999999999 9999999999999998765
No 39
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.96 E-value=9.8e-30 Score=231.17 Aligned_cols=165 Identities=16% Similarity=0.179 Sum_probs=127.1
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeE--------------------EE
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRV--------------------VI 156 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i--------------------~~ 156 (337)
+++++++|+.... ++++++.+.+|++++|+||||||||||+++|+|+++|+. +.| .+
T Consensus 3 ~~~l~~~~~~~~~--l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~-G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (232)
T cd03218 3 AENLSKRYGKRKV--VNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDS-GKILLDGQDITKLPMHKRARLGIGY 79 (232)
T ss_pred EEEEEEEeCCEEe--eccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCC-cEEEECCEecccCCHhHHHhccEEE
Confidence 5789999976544 999999999999999999999999999999999998863 333 33
Q ss_pred EcCCcccccCCCCccc-----------------ccc-c----------chhccCCCcchhHHHHHHHHHhhCCcEEEEcC
Q 019702 157 VDTSNEIGGDGDIPHS-----------------AIG-T----------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDE 208 (337)
Q Consensus 157 v~~~~ei~~~~~~~~~-----------------~~~-~----------~~~~~~~S~g~k~r~~ia~al~~~P~vlilDE 208 (337)
+++...+.....+.++ .+. . .+....+|+||+||+++|+|++.+|++|++||
T Consensus 80 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDE 159 (232)
T cd03218 80 LPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDE 159 (232)
T ss_pred ecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecC
Confidence 3332211100000000 000 0 01233479999999999999999999999999
Q ss_pred CCCHHHHH-------HHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHH
Q 019702 209 IGTEAEAH-------ACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (337)
Q Consensus 209 p~~~ld~~-------~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~ 266 (337)
||+++|.. .+.++.++|.|+|++||+.+.+..+||+++ ++++|+++..|+++++..
T Consensus 160 Pt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~--~l~~G~i~~~~~~~~~~~ 222 (232)
T cd03218 160 PFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAY--IIYEGKVLAEGTPEEIAA 222 (232)
T ss_pred CcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEE--EEECCeEEEEeCHHHhhc
Confidence 99999953 455566678999999999999999999999 999999999999888754
No 40
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.96 E-value=7e-30 Score=220.45 Aligned_cols=151 Identities=19% Similarity=0.230 Sum_probs=118.8
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEcCCcccccCC--CCccccc
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDG--DIPHSAI 174 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~~~~ei~~~~--~~~~~~~ 174 (337)
+++++++|.... .++++++.+++|++++|+||||||||||+++|+|+++|+ .+.+.+-.. .+.... ......+
T Consensus 3 ~~~l~~~~~~~~--vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~-~G~v~~~g~--~~~~~~~~~~~~~~i 77 (163)
T cd03216 3 LRGITKRFGGVK--ALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPD-SGEILVDGK--EVSFASPRDARRAGI 77 (163)
T ss_pred EEEEEEEECCeE--EEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CeEEEECCE--ECCcCCHHHHHhcCe
Confidence 578999997654 499999999999999999999999999999999999887 455543221 111100 0000111
Q ss_pred ccchhccCCCcchhHHHHHHHHHhhCCcEEEEcCCCCHHHH-------HHHHHHHhcCCeEEEEEcCcchhHHhhchHHH
Q 019702 175 GTARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILS 247 (337)
Q Consensus 175 ~~~~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~~ld~-------~~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~ 247 (337)
+. ...+|+||+||+++|+|++.+|++|++|||++++|. +.+.++.++|.|+|++||+.+.+..+||+++
T Consensus 78 ~~---~~qLS~G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~~~- 153 (163)
T cd03216 78 AM---VYQLSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVT- 153 (163)
T ss_pred EE---EEecCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEE-
Confidence 11 112999999999999999999999999999999994 3455556668999999999998889999999
Q ss_pred HHhcCceEEE
Q 019702 248 DLIGGVDTVT 257 (337)
Q Consensus 248 ~ll~~G~iv~ 257 (337)
++++|++++
T Consensus 154 -~l~~g~i~~ 162 (163)
T cd03216 154 -VLRDGRVVG 162 (163)
T ss_pred -EEECCEEEe
Confidence 899999864
No 41
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=7.7e-30 Score=229.04 Aligned_cols=159 Identities=19% Similarity=0.264 Sum_probs=120.4
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCC----------------CeEEEEcCC
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ----------------KRVVIVDTS 160 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~----------------~~i~~v~~~ 160 (337)
+++++++|.... .++++++.+++|++++|+||||||||||+++|+|+++|+.+ ..+.++++.
T Consensus 3 ~~~l~~~~~~~~--il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~ 80 (213)
T cd03259 3 LKGLSKTYGSVR--ALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMVFQD 80 (213)
T ss_pred eeeeEEEeCCee--eecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEEcCc
Confidence 568999997644 49999999999999999999999999999999999988632 123444433
Q ss_pred cccccCCC-------------Ccccc----c-------cc----chhccCCCcchhHHHHHHHHHhhCCcEEEEcCCCCH
Q 019702 161 NEIGGDGD-------------IPHSA----I-------GT----ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTE 212 (337)
Q Consensus 161 ~ei~~~~~-------------~~~~~----~-------~~----~~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~~ 212 (337)
..+..... ..... + +. .+....+|+||+||++||+|++.+|++||+||||++
T Consensus 81 ~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDEPt~~ 160 (213)
T cd03259 81 YALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSA 160 (213)
T ss_pred hhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence 22111000 00000 0 00 022345799999999999999999999999999999
Q ss_pred HHH-------HHHHHHHh-cCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEec
Q 019702 213 AEA-------HACRSIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLG 259 (337)
Q Consensus 213 ld~-------~~l~~~~~-~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g 259 (337)
+|. +.+.++++ .|.|||++||+.+++..+||+++ ++++|+++..|
T Consensus 161 LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~--~l~~G~i~~~g 213 (213)
T cd03259 161 LDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIA--VMNEGRIVQVG 213 (213)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEE--EEECCEEEecC
Confidence 995 34555554 48999999999999999999999 99999987654
No 42
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.96 E-value=1.9e-29 Score=234.01 Aligned_cols=173 Identities=19% Similarity=0.218 Sum_probs=133.1
Q ss_pred EeeEEEEECCc--cccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHcccc-cc---C--------------------
Q 019702 97 IVGLTCRVGRA--VSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLS-DE---F-------------------- 150 (337)
Q Consensus 97 i~~l~~r~~~~--~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~-~~---~-------------------- 150 (337)
|+||++.|... ...++++++|.+++||+++|+|.+|||||||.++|+|+++ +. .
T Consensus 4 v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~ 83 (316)
T COG0444 4 VKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELR 83 (316)
T ss_pred EeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHH
Confidence 67899988653 3457999999999999999999999999999999999997 42 1
Q ss_pred ---CCeEEEEcCCcccccC----------------CCC-ccc-----ccccc-------------hhccCCCcchhHHHH
Q 019702 151 ---QKRVVIVDTSNEIGGD----------------GDI-PHS-----AIGTA-------------RRMQVPEPSLQHKVM 192 (337)
Q Consensus 151 ---~~~i~~v~~~~ei~~~----------------~~~-~~~-----~~~~~-------------~~~~~~S~g~k~r~~ 192 (337)
++.|.+++|.+--... ... ... ....+ .....+||||+||++
T Consensus 84 ~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQRV~ 163 (316)
T COG0444 84 KIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQRVM 163 (316)
T ss_pred hhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHHHHH
Confidence 2234444433211110 000 000 00000 112346999999999
Q ss_pred HHHHHhhCCcEEEEcCCCCHHHH-------HHHHHHHh-cCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHH
Q 019702 193 IEAVENHMPEVIIVDEIGTEAEA-------HACRSIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEAR 264 (337)
Q Consensus 193 ia~al~~~P~vlilDEp~~~ld~-------~~l~~~~~-~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~ 264 (337)
||.|++.+|++||.||||++||. +.++++++ .|.++|++|||+..+..+||+++ +|+.|++|+.|+.+++
T Consensus 164 IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~--VMYaG~iVE~g~~~~i 241 (316)
T COG0444 164 IAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVA--VMYAGRIVEEGPVEEI 241 (316)
T ss_pred HHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEE--EEECcEEEEeCCHHHH
Confidence 99999999999999999999994 55677764 69999999999999999999999 9999999999999999
Q ss_pred HHhhhHH
Q 019702 265 ARRCQKS 271 (337)
Q Consensus 265 ~~~~~~~ 271 (337)
+.++...
T Consensus 242 ~~~P~HP 248 (316)
T COG0444 242 FKNPKHP 248 (316)
T ss_pred hcCCCCh
Confidence 9875443
No 43
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.96 E-value=4.8e-30 Score=220.63 Aligned_cols=160 Identities=16% Similarity=0.159 Sum_probs=125.2
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCC---------------------CeEE
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ---------------------KRVV 155 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~---------------------~~i~ 155 (337)
+++++++|+.. ..+++++++.+++|+++-|+||+||||||||+.|.+..+|+.+ ++|+
T Consensus 4 f~~V~k~Y~~g-~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~IG 82 (223)
T COG2884 4 FENVSKAYPGG-REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQIG 82 (223)
T ss_pred ehhhhhhcCCC-chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhheee
Confidence 56899999887 4479999999999999999999999999999999999999832 2333
Q ss_pred EEcCCcccccCCCCcccc------ccc------------c----------hhccCCCcchhHHHHHHHHHhhCCcEEEEc
Q 019702 156 IVDTSNEIGGDGDIPHSA------IGT------------A----------RRMQVPEPSLQHKVMIEAVENHMPEVIIVD 207 (337)
Q Consensus 156 ~v~~~~ei~~~~~~~~~~------~~~------------~----------~~~~~~S~g~k~r~~ia~al~~~P~vlilD 207 (337)
++.|.-.+.....+.++. ++. + .....+|||+|||++||||++++|++|+.|
T Consensus 83 vVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlAD 162 (223)
T COG2884 83 VVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLAD 162 (223)
T ss_pred eEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeec
Confidence 343332221111111110 000 0 123457999999999999999999999999
Q ss_pred CCCCHHHH-------HHHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEec
Q 019702 208 EIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLG 259 (337)
Q Consensus 208 Ep~~~ld~-------~~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g 259 (337)
|||.++|. ..+.++...|.||+++|||.+.++.+..|++ .+.+|+++...
T Consensus 163 EPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl--~l~~Grl~~d~ 219 (223)
T COG2884 163 EPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVL--ALEDGRLVRDE 219 (223)
T ss_pred CCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEE--EEeCCEEEecc
Confidence 99999994 4567778889999999999999999999999 89999998764
No 44
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=1.5e-29 Score=231.27 Aligned_cols=166 Identities=17% Similarity=0.186 Sum_probs=128.0
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCC----------------CeEEEEcCC
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ----------------KRVVIVDTS 160 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~----------------~~i~~v~~~ 160 (337)
+++++++|+... .++++++.+++|++++|+||||||||||+++|+|+++|+.+ ..+.++.+.
T Consensus 5 ~~~l~~~~~~~~--il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~ 82 (239)
T cd03296 5 VRNVSKRFGDFV--ALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFVFQH 82 (239)
T ss_pred EEeEEEEECCEE--eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEEEecC
Confidence 678999997644 49999999999999999999999999999999999987632 124444443
Q ss_pred cccccCCC-------------C----ccc----cccc-----------chhccCCCcchhHHHHHHHHHhhCCcEEEEcC
Q 019702 161 NEIGGDGD-------------I----PHS----AIGT-----------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDE 208 (337)
Q Consensus 161 ~ei~~~~~-------------~----~~~----~~~~-----------~~~~~~~S~g~k~r~~ia~al~~~P~vlilDE 208 (337)
..+..... . ... .+.. .+....+|+||+||++||+|++.+|++||+||
T Consensus 83 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDE 162 (239)
T cd03296 83 YALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDE 162 (239)
T ss_pred CcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 22211000 0 000 0000 02234579999999999999999999999999
Q ss_pred CCCHHHH-------HHHHHHHhc-CCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHH
Q 019702 209 IGTEAEA-------HACRSIAER-GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (337)
Q Consensus 209 p~~~ld~-------~~l~~~~~~-G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~ 266 (337)
||+++|. +.+.+++++ |.|||++||+.+.+..+||+++ ++++|+++..|++++++.
T Consensus 163 P~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~--~l~~G~i~~~~~~~~~~~ 226 (239)
T cd03296 163 PFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVV--VMNKGRIEQVGTPDEVYD 226 (239)
T ss_pred CcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEE--EEECCeEEEecCHHHHhc
Confidence 9999995 345555554 8999999999999889999999 999999999999988764
No 45
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=9.4e-30 Score=246.88 Aligned_cols=169 Identities=16% Similarity=0.186 Sum_probs=131.5
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCC----------------CeEEEEcCC
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ----------------KRVVIVDTS 160 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~----------------~~i~~v~~~ 160 (337)
+++++++|+... .++++++.+++|++++|+|||||||||||++|+|+..|+.+ +.+.++++.
T Consensus 22 l~~v~~~~~~~~--~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~vfQ~ 99 (377)
T PRK11607 22 IRNLTKSFDGQH--AVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPINMMFQS 99 (377)
T ss_pred EEeEEEEECCEE--EEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEeCC
Confidence 668999997644 48999999999999999999999999999999999988732 234455544
Q ss_pred cccccCCCCcccc-----------------ccc-----------chhccCCCcchhHHHHHHHHHhhCCcEEEEcCCCCH
Q 019702 161 NEIGGDGDIPHSA-----------------IGT-----------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTE 212 (337)
Q Consensus 161 ~ei~~~~~~~~~~-----------------~~~-----------~~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~~ 212 (337)
..+.....+.++. +.. .+....+|+||+||++||+||+.+|++|+||||+++
T Consensus 100 ~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~lLLLDEP~s~ 179 (377)
T PRK11607 100 YALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGA 179 (377)
T ss_pred CccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 3221110000000 000 123345799999999999999999999999999999
Q ss_pred HHHH-------HHHHHH-hcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHhhh
Q 019702 213 AEAH-------ACRSIA-ERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARRCQ 269 (337)
Q Consensus 213 ld~~-------~l~~~~-~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~~~ 269 (337)
+|.. .+.++. +.|.|+|++||+.+++..+||+++ +|++|+++..|+|++++..+.
T Consensus 180 LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~--vl~~G~i~~~g~~~~~~~~p~ 242 (377)
T PRK11607 180 LDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIA--IMNRGKFVQIGEPEEIYEHPT 242 (377)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEE--EEeCCEEEEEcCHHHHHhCCc
Confidence 9953 234444 458999999999999999999999 999999999999999987643
No 46
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.96 E-value=6.6e-30 Score=241.57 Aligned_cols=160 Identities=24% Similarity=0.284 Sum_probs=123.1
Q ss_pred EECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeE------------------EEEcCCcccc
Q 019702 103 RVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRV------------------VIVDTSNEIG 164 (337)
Q Consensus 103 r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i------------------~~v~~~~ei~ 164 (337)
+|+... +++++++.+++|++++|+||||||||||+++|+|+++|+. +.| .++.+...+.
T Consensus 2 ~y~~~~--~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~-G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~ 78 (302)
T TIGR01188 2 VYGDFK--AVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTS-GTARVAGYDVVREPRKVRRSIGIVPQYASVD 78 (302)
T ss_pred eeCCee--EEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCc-eEEEECCEEcccCHHHHHhhcEEecCCCCCC
Confidence 455443 4899999999999999999999999999999999999873 333 3333322111
Q ss_pred cCCC-------------Ccccc----c-------cc----chhccCCCcchhHHHHHHHHHhhCCcEEEEcCCCCHHHH-
Q 019702 165 GDGD-------------IPHSA----I-------GT----ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEA- 215 (337)
Q Consensus 165 ~~~~-------------~~~~~----~-------~~----~~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~~ld~- 215 (337)
.... ..... + +. .+....+|+||+||+++|+|++++|++|||||||+++|.
T Consensus 79 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~ 158 (302)
T TIGR01188 79 EDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPR 158 (302)
T ss_pred CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHH
Confidence 1000 00000 0 00 122345799999999999999999999999999999995
Q ss_pred ------HHHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHh
Q 019702 216 ------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (337)
Q Consensus 216 ------~~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~ 267 (337)
+.+.+++++|.|||++||+++++..+||+++ ++++|+++..|+++++...
T Consensus 159 ~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~--~l~~G~i~~~g~~~~l~~~ 214 (302)
T TIGR01188 159 TRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIA--IIDHGRIIAEGTPEELKRR 214 (302)
T ss_pred HHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEE--EEECCEEEEECCHHHHHHh
Confidence 3455666679999999999999999999999 9999999999999988653
No 47
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.96 E-value=1.3e-29 Score=224.65 Aligned_cols=167 Identities=15% Similarity=0.191 Sum_probs=135.1
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCC-------------------CeEEEE
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ-------------------KRVVIV 157 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~-------------------~~i~~v 157 (337)
+++++..|+...+ ++++++.+++|++++|+|+||+||||||++|+|++++..+ ..+.++
T Consensus 6 v~~l~~~YG~~~~--L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi~~V 83 (237)
T COG0410 6 VENLSAGYGKIQA--LRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGIAYV 83 (237)
T ss_pred EEeEeecccceeE--EeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCeEeC
Confidence 6799999998666 9999999999999999999999999999999999987621 234555
Q ss_pred cCCcccccCCCCccc--------------------ccc--------cchhccCCCcchhHHHHHHHHHhhCCcEEEEcCC
Q 019702 158 DTSNEIGGDGDIPHS--------------------AIG--------TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEI 209 (337)
Q Consensus 158 ~~~~ei~~~~~~~~~--------------------~~~--------~~~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp 209 (337)
++..++.....+.++ .+. ..++.+.+|||+||.++|||||+.+|++|+||||
T Consensus 84 PegR~iF~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~PklLLLDEP 163 (237)
T COG0410 84 PEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEP 163 (237)
T ss_pred cccccchhhCcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCCEEEecCC
Confidence 555444221111000 000 0134567899999999999999999999999999
Q ss_pred CCHHHH-------HHHHHHHhc-CCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHh
Q 019702 210 GTEAEA-------HACRSIAER-GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (337)
Q Consensus 210 ~~~ld~-------~~l~~~~~~-G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~ 267 (337)
+.++-+ +++.+++++ |.||+.+.++...+..++|+.+ +|.+|+++..|+.+++..+
T Consensus 164 s~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~y--vle~Griv~~G~~~eL~~~ 227 (237)
T COG0410 164 SEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGY--VLENGRIVLSGTAAELLAD 227 (237)
T ss_pred ccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEE--EEeCCEEEEecCHHHHhcC
Confidence 998873 567777755 8899999999999999999999 9999999999999998875
No 48
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.96 E-value=1.1e-29 Score=239.92 Aligned_cols=166 Identities=19% Similarity=0.230 Sum_probs=129.2
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCC-----------------CeEEEEcC
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ-----------------KRVVIVDT 159 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~-----------------~~i~~v~~ 159 (337)
+++++++|+... .++++++.+++|++++|+||||||||||+++|+|+++|+.+ .+++++++
T Consensus 5 ~~~l~~~~~~~~--~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~~~q 82 (301)
T TIGR03522 5 VSSLTKLYGTQN--ALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYLPE 82 (301)
T ss_pred EEEEEEEECCEE--EEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceEEecC
Confidence 679999997654 49999999999999999999999999999999999988732 12444444
Q ss_pred CcccccC-------------CCCccc----cc-------cc----chhccCCCcchhHHHHHHHHHhhCCcEEEEcCCCC
Q 019702 160 SNEIGGD-------------GDIPHS----AI-------GT----ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGT 211 (337)
Q Consensus 160 ~~ei~~~-------------~~~~~~----~~-------~~----~~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~ 211 (337)
...+... .+.+.. .. +. .+....+|+||+||+++|+|++++|++|++||||+
T Consensus 83 ~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lliLDEPt~ 162 (301)
T TIGR03522 83 HNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTT 162 (301)
T ss_pred CCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 3222110 001100 00 00 12334579999999999999999999999999999
Q ss_pred HHHHH-------HHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHh
Q 019702 212 EAEAH-------ACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (337)
Q Consensus 212 ~ld~~-------~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~ 267 (337)
++|.. .+.+++ ++.|||++||++++++.+||+++ ++++|++++.|+++++...
T Consensus 163 gLD~~~~~~l~~~l~~~~-~~~tiii~sH~l~~~~~~~d~i~--~l~~G~i~~~g~~~~~~~~ 222 (301)
T TIGR03522 163 GLDPNQLVEIRNVIKNIG-KDKTIILSTHIMQEVEAICDRVI--IINKGKIVADKKLDELSAA 222 (301)
T ss_pred cCCHHHHHHHHHHHHHhc-CCCEEEEEcCCHHHHHHhCCEEE--EEECCEEEEeCCHHHHHHh
Confidence 99953 344444 37999999999999999999999 9999999999999998653
No 49
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.96 E-value=1.3e-29 Score=228.72 Aligned_cols=164 Identities=16% Similarity=0.200 Sum_probs=126.0
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCe--------------------EEE
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKR--------------------VVI 156 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~--------------------i~~ 156 (337)
+++++++|+... .++++++.+.+|++++|+||||||||||+++|+|+++|+. +. +.+
T Consensus 3 ~~~l~~~~~~~~--~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~-G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (222)
T cd03224 3 VENLNAGYGKSQ--ILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRS-GSIRFDGRDITGLPPHERARAGIGY 79 (222)
T ss_pred EeeEEeecCCee--EeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCC-ceEEECCEEcCCCCHHHHHhcCeEE
Confidence 568999997654 4999999999999999999999999999999999998873 33 333
Q ss_pred EcCCcccccCCCCc-----------cc----ccc-c-----------chhccCCCcchhHHHHHHHHHhhCCcEEEEcCC
Q 019702 157 VDTSNEIGGDGDIP-----------HS----AIG-T-----------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEI 209 (337)
Q Consensus 157 v~~~~ei~~~~~~~-----------~~----~~~-~-----------~~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp 209 (337)
+++...+.....+. .. .+. . ......+|+||+||+++|+|++.+|++|++|||
T Consensus 80 ~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP 159 (222)
T cd03224 80 VPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEP 159 (222)
T ss_pred eccccccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEECCC
Confidence 33322111000000 00 000 0 012234799999999999999999999999999
Q ss_pred CCHHHH-------HHHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHH
Q 019702 210 GTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARA 265 (337)
Q Consensus 210 ~~~ld~-------~~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~ 265 (337)
|+++|. +.+.+++++|.|+|++||+.+.+..+||+++ ++++|+++..|++++++
T Consensus 160 t~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~--~l~~G~i~~~~~~~~~~ 220 (222)
T cd03224 160 SEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAY--VLERGRVVLEGTAAELL 220 (222)
T ss_pred cccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEE--EeeCCeEEEeCCHHHHh
Confidence 999995 3455556678999999999999999999999 99999999999888765
No 50
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.96 E-value=1.6e-29 Score=249.81 Aligned_cols=172 Identities=20% Similarity=0.226 Sum_probs=135.4
Q ss_pred EeeEEEEECC---------ccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEcCCc------
Q 019702 97 IVGLTCRVGR---------AVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSN------ 161 (337)
Q Consensus 97 i~~l~~r~~~---------~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~~~~------ 161 (337)
+++++++|.. ....++++++|.+.+||.++|+|++|||||||.|+|+|++.|+ ++.+.+.....
T Consensus 283 V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~-~G~i~~~g~~~~~~~~~ 361 (539)
T COG1123 283 VRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPS-SGSIIFDGQDLDLTGGE 361 (539)
T ss_pred eeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CceEEEeCcccccccch
Confidence 7789999973 1235789999999999999999999999999999999999996 56665543320
Q ss_pred ------cc--cc----CCCCcccccc-----------------------------------cchhccCCCcchhHHHHHH
Q 019702 162 ------EI--GG----DGDIPHSAIG-----------------------------------TARRMQVPEPSLQHKVMIE 194 (337)
Q Consensus 162 ------ei--~~----~~~~~~~~~~-----------------------------------~~~~~~~~S~g~k~r~~ia 194 (337)
.+ .| ....|+..++ ..+....+||||+||++||
T Consensus 362 ~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQRvaIA 441 (539)
T COG1123 362 LRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIA 441 (539)
T ss_pred hhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhHHHHHH
Confidence 00 00 0001111100 0133445799999999999
Q ss_pred HHHhhCCcEEEEcCCCCHHHH-------HHHHHHHhc-CCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHH
Q 019702 195 AVENHMPEVIIVDEIGTEAEA-------HACRSIAER-GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (337)
Q Consensus 195 ~al~~~P~vlilDEp~~~ld~-------~~l~~~~~~-G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~ 266 (337)
+||+.+|++|++|||++.+|. +++..+.++ |.|.+++|||+.++..+||+++ +|+.|++|..|+.++++.
T Consensus 442 RALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~--vm~~G~iVE~G~~~~v~~ 519 (539)
T COG1123 442 RALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVA--VMYDGRIVEEGPTEKVFE 519 (539)
T ss_pred HHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEE--EEECCeEEEeCCHHHHhc
Confidence 999999999999999999994 567777644 9999999999999999999999 999999999999999998
Q ss_pred hhhHH
Q 019702 267 RCQKS 271 (337)
Q Consensus 267 ~~~~~ 271 (337)
.++..
T Consensus 520 ~p~h~ 524 (539)
T COG1123 520 NPQHP 524 (539)
T ss_pred CCCCh
Confidence 65433
No 51
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=3.6e-29 Score=235.02 Aligned_cols=169 Identities=17% Similarity=0.163 Sum_probs=130.0
Q ss_pred EeeEEEEECCcc---ccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCC---------------------
Q 019702 97 IVGLTCRVGRAV---SGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK--------------------- 152 (337)
Q Consensus 97 i~~l~~r~~~~~---~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~--------------------- 152 (337)
+++++++|+... ...++++++.+.+|++++|+||||||||||+++|+|++.|+.+.
T Consensus 4 ~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 83 (288)
T PRK13643 4 FEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVR 83 (288)
T ss_pred EEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHHHH
Confidence 678999997432 13599999999999999999999999999999999999887321
Q ss_pred -eEEEEcCCcc--cccC------------CCCcccc-----------ccc-----chhccCCCcchhHHHHHHHHHhhCC
Q 019702 153 -RVVIVDTSNE--IGGD------------GDIPHSA-----------IGT-----ARRMQVPEPSLQHKVMIEAVENHMP 201 (337)
Q Consensus 153 -~i~~v~~~~e--i~~~------------~~~~~~~-----------~~~-----~~~~~~~S~g~k~r~~ia~al~~~P 201 (337)
.+.++.+..+ +... ...+... ++. .+....+|+||+||++||++|+++|
T Consensus 84 ~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL~~~p 163 (288)
T PRK13643 84 KKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEP 163 (288)
T ss_pred hhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHHHhCC
Confidence 2344444321 1000 0000000 000 0223457999999999999999999
Q ss_pred cEEEEcCCCCHHHH-------HHHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHh
Q 019702 202 EVIIVDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (337)
Q Consensus 202 ~vlilDEp~~~ld~-------~~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~ 267 (337)
++||+||||+++|. +.+..+++.|.|||++||+++++..+||+++ +|++|+++..|++++++..
T Consensus 164 ~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~--~l~~G~i~~~g~~~~~~~~ 234 (288)
T PRK13643 164 EVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVY--LLEKGHIISCGTPSDVFQE 234 (288)
T ss_pred CEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEE--EEECCEEEEECCHHHHHcC
Confidence 99999999999995 3455556679999999999999989999999 9999999999999998864
No 52
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=1.5e-29 Score=230.26 Aligned_cols=167 Identities=16% Similarity=0.174 Sum_probs=126.4
Q ss_pred EeeEEEEECCcc--ccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeE--------------------
Q 019702 97 IVGLTCRVGRAV--SGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRV-------------------- 154 (337)
Q Consensus 97 i~~l~~r~~~~~--~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i-------------------- 154 (337)
+++++++|+... ...++++++.+++|++++|+||||||||||+++|+|+++|+. +.|
T Consensus 4 ~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~-G~i~~~g~~~~~~~~~~~~~~~~ 82 (233)
T cd03258 4 LKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTS-GSVLVDGTDLTLLSGKELRKARR 82 (233)
T ss_pred EecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC-ceEEECCEEcccCCHHHHHHHHh
Confidence 568999997541 124999999999999999999999999999999999998873 333
Q ss_pred --EEEcCCcccccCCCCccc-------------c----c-------cc----chhccCCCcchhHHHHHHHHHhhCCcEE
Q 019702 155 --VIVDTSNEIGGDGDIPHS-------------A----I-------GT----ARRMQVPEPSLQHKVMIEAVENHMPEVI 204 (337)
Q Consensus 155 --~~v~~~~ei~~~~~~~~~-------------~----~-------~~----~~~~~~~S~g~k~r~~ia~al~~~P~vl 204 (337)
.++++...+.....+..+ . + +. .+....+|+||+||++||+|++.+|+++
T Consensus 83 ~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ll 162 (233)
T cd03258 83 RIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVL 162 (233)
T ss_pred heEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 333332211100000000 0 0 00 0123347999999999999999999999
Q ss_pred EEcCCCCHHHH-------HHHHHHHhc-CCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHH
Q 019702 205 IVDEIGTEAEA-------HACRSIAER-GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (337)
Q Consensus 205 ilDEp~~~ld~-------~~l~~~~~~-G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~ 266 (337)
|+|||++++|. +.+.+++++ |.|||++||+.+.+..+||+++ ++++|+++..|+++++..
T Consensus 163 lLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~--~l~~G~i~~~~~~~~~~~ 230 (233)
T cd03258 163 LCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVA--VMEKGEVVEEGTVEEVFA 230 (233)
T ss_pred EecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEE--EEECCEEEEecCHHHHhc
Confidence 99999999995 345555554 8999999999999989999999 999999999999887654
No 53
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.96 E-value=1.7e-29 Score=230.18 Aligned_cols=166 Identities=17% Similarity=0.184 Sum_probs=127.3
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCC-------------------eEEEE
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK-------------------RVVIV 157 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~-------------------~i~~v 157 (337)
+++++++|+... .++++++.+++|++++|+||||||||||+++|+|+++|+.+. .+.++
T Consensus 3 ~~~l~~~~~~~~--~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v 80 (236)
T cd03219 3 VRGLTKRFGGLV--ALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGRT 80 (236)
T ss_pred eeeeEEEECCEE--EecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEEE
Confidence 568999997644 499999999999999999999999999999999999876321 13344
Q ss_pred cCCcccccCCCCc-----------------------cc----cccc-----------chhccCCCcchhHHHHHHHHHhh
Q 019702 158 DTSNEIGGDGDIP-----------------------HS----AIGT-----------ARRMQVPEPSLQHKVMIEAVENH 199 (337)
Q Consensus 158 ~~~~ei~~~~~~~-----------------------~~----~~~~-----------~~~~~~~S~g~k~r~~ia~al~~ 199 (337)
.+...+.....+. .. .+.. .+....+|+||+||+++|+|++.
T Consensus 81 ~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~ 160 (236)
T cd03219 81 FQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARALAT 160 (236)
T ss_pred ecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHHHHHHhc
Confidence 3332211100000 00 0000 01233479999999999999999
Q ss_pred CCcEEEEcCCCCHHHH-------HHHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHH
Q 019702 200 MPEVIIVDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (337)
Q Consensus 200 ~P~vlilDEp~~~ld~-------~~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~ 266 (337)
+|++|++||||+++|. +.+.+++++|.|+|++||+.+++..+||+++ ++++|+++..|+++++..
T Consensus 161 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~--~l~~G~i~~~~~~~~~~~ 232 (236)
T cd03219 161 DPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVT--VLDQGRVIAEGTPDEVRN 232 (236)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEE--EEeCCEEEeecCHHHhcc
Confidence 9999999999999995 3455555678999999999999999999999 999999999999988754
No 54
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=2.4e-29 Score=234.17 Aligned_cols=166 Identities=18% Similarity=0.153 Sum_probs=128.3
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeE---------------------E
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRV---------------------V 155 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i---------------------~ 155 (337)
+++++++|+... .++++++.+++|++++|+||||||||||+++|+|+++|+. +.| .
T Consensus 4 ~~~l~~~~~~~~--il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~-G~i~~~g~~i~~~~~~~~~~~~~i~ 80 (271)
T PRK13638 4 TSDLWFRYQDEP--VLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQK-GAVLWQGKPLDYSKRGLLALRQQVA 80 (271)
T ss_pred EEEEEEEcCCcc--cccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCc-cEEEECCEEcccccCCHHHHHhheE
Confidence 679999997644 4999999999999999999999999999999999998873 333 3
Q ss_pred EEcCCcccc-cCCCC-------------ccccc-----------cc----chhccCCCcchhHHHHHHHHHhhCCcEEEE
Q 019702 156 IVDTSNEIG-GDGDI-------------PHSAI-----------GT----ARRMQVPEPSLQHKVMIEAVENHMPEVIIV 206 (337)
Q Consensus 156 ~v~~~~ei~-~~~~~-------------~~~~~-----------~~----~~~~~~~S~g~k~r~~ia~al~~~P~vlil 206 (337)
++.+..... +...+ ..... +. .+....+|+||+||++||+|++.+|++||+
T Consensus 81 ~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~~p~lllL 160 (271)
T PRK13638 81 TVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLL 160 (271)
T ss_pred EEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 333321100 00000 00000 00 012345799999999999999999999999
Q ss_pred cCCCCHHHH-------HHHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHh
Q 019702 207 DEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (337)
Q Consensus 207 DEp~~~ld~-------~~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~ 267 (337)
||||+++|. +.+.++.++|.|||++||+.+.+..+||+++ ++.+|+++..|++++++..
T Consensus 161 DEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~--~l~~G~i~~~g~~~~~~~~ 226 (271)
T PRK13638 161 DEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVY--VLRQGQILTHGAPGEVFAC 226 (271)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEE--EEECCEEEEeCCHHHHhcC
Confidence 999999995 3455566668999999999999989999999 9999999999999988764
No 55
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=6.8e-29 Score=233.07 Aligned_cols=169 Identities=15% Similarity=0.161 Sum_probs=129.2
Q ss_pred EeeEEEEECCcc---ccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCC---------------------
Q 019702 97 IVGLTCRVGRAV---SGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK--------------------- 152 (337)
Q Consensus 97 i~~l~~r~~~~~---~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~--------------------- 152 (337)
+++++++|++.. ...++++++.+.+|++++|+||||||||||+++|+|+++|+.+.
T Consensus 5 ~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 84 (287)
T PRK13641 5 FENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKKLR 84 (287)
T ss_pred EEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHH
Confidence 679999997421 23599999999999999999999999999999999999987321
Q ss_pred -eEEEEcCCcc--cccC------------CCCcccc-----------ccc-----chhccCCCcchhHHHHHHHHHhhCC
Q 019702 153 -RVVIVDTSNE--IGGD------------GDIPHSA-----------IGT-----ARRMQVPEPSLQHKVMIEAVENHMP 201 (337)
Q Consensus 153 -~i~~v~~~~e--i~~~------------~~~~~~~-----------~~~-----~~~~~~~S~g~k~r~~ia~al~~~P 201 (337)
.+.++.+... +... ....... ++. .+....+|+||+||++||+|++.+|
T Consensus 85 ~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral~~~p 164 (287)
T PRK13641 85 KKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEP 164 (287)
T ss_pred hceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHHHcCC
Confidence 2334433321 1000 0000000 000 1223457999999999999999999
Q ss_pred cEEEEcCCCCHHHH-------HHHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHh
Q 019702 202 EVIIVDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (337)
Q Consensus 202 ~vlilDEp~~~ld~-------~~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~ 267 (337)
++||+||||+++|. +.+.++.+.|.|||++||+++.+..+||+++ ++++|+++..|++++++..
T Consensus 165 ~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~--~l~~G~i~~~g~~~~~~~~ 235 (287)
T PRK13641 165 EILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVL--VLEHGKLIKHASPKEIFSD 235 (287)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEE--EEECCEEEEeCCHHHHhcC
Confidence 99999999999995 3455566679999999999999999999999 9999999999999988753
No 56
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.96 E-value=2.9e-29 Score=230.61 Aligned_cols=166 Identities=17% Similarity=0.176 Sum_probs=127.6
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeE----------------------
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRV---------------------- 154 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i---------------------- 154 (337)
+++++++|++.. .++++++.+++|++++|+||||||||||+++|+|+++|+. +.|
T Consensus 6 ~~~l~~~~~~~~--~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~-G~i~~~g~~~~~~~~~~~~~~~~~~ 82 (250)
T PRK11264 6 VKNLVKKFHGQT--VLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEA-GTIRVGDITIDTARSLSQQKGLIRQ 82 (250)
T ss_pred EeceEEEECCee--eeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCC-eEEEECCEEccccccccchhhHHHH
Confidence 678999997644 4999999999999999999999999999999999998763 332
Q ss_pred -----EEEcCCcccccCCCCccc------------------cc-------cc----chhccCCCcchhHHHHHHHHHhhC
Q 019702 155 -----VIVDTSNEIGGDGDIPHS------------------AI-------GT----ARRMQVPEPSLQHKVMIEAVENHM 200 (337)
Q Consensus 155 -----~~v~~~~ei~~~~~~~~~------------------~~-------~~----~~~~~~~S~g~k~r~~ia~al~~~ 200 (337)
.++.+...+.....+.++ .+ +. ......+|+||+||++||+|++.+
T Consensus 83 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la~al~~~ 162 (250)
T PRK11264 83 LRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMR 162 (250)
T ss_pred hhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHHHHHHHhcC
Confidence 333332211100000000 00 00 012344799999999999999999
Q ss_pred CcEEEEcCCCCHHHH-------HHHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHh
Q 019702 201 PEVIIVDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (337)
Q Consensus 201 P~vlilDEp~~~ld~-------~~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~ 267 (337)
|++||+||||+++|. +.+.++.++|.|||++||+.+++..+||+++ ++++|+++..|++++++..
T Consensus 163 p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~--~l~~G~i~~~~~~~~~~~~ 234 (250)
T PRK11264 163 PEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAI--FMDQGRIVEQGPAKALFAD 234 (250)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEE--EEECCEEEEeCCHHHHhcC
Confidence 999999999999995 3345556669999999999999999999999 9999999999999987653
No 57
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=2.1e-29 Score=227.41 Aligned_cols=163 Identities=14% Similarity=0.121 Sum_probs=122.0
Q ss_pred EeeEEEEECCcc--ccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCC-------------CeEEEEcCCc
Q 019702 97 IVGLTCRVGRAV--SGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ-------------KRVVIVDTSN 161 (337)
Q Consensus 97 i~~l~~r~~~~~--~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~-------------~~i~~v~~~~ 161 (337)
+++++++|+... ...++++++.+++|++++|+||||||||||+++|+|+++|+.+ ..+.++.+..
T Consensus 3 ~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~q~~ 82 (220)
T cd03293 3 VRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVFQQD 82 (220)
T ss_pred EEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEEeccc
Confidence 568999997511 1249999999999999999999999999999999999988632 1244444432
Q ss_pred ccccCCCCcc-------------cc----c-------cc----chhccCCCcchhHHHHHHHHHhhCCcEEEEcCCCCHH
Q 019702 162 EIGGDGDIPH-------------SA----I-------GT----ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEA 213 (337)
Q Consensus 162 ei~~~~~~~~-------------~~----~-------~~----~~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~~l 213 (337)
.+.....+.+ .. + +. .+....+|+||+||++||+|++.+|++||+||||+++
T Consensus 83 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~L 162 (220)
T cd03293 83 ALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSAL 162 (220)
T ss_pred ccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCC
Confidence 2211000000 00 0 00 0223457999999999999999999999999999999
Q ss_pred HH-------HHHHHHHh-cCCeEEEEEcCcchhHHhhchHHHHHhc--CceEEEecCH
Q 019702 214 EA-------HACRSIAE-RGVMLIGTAHGEWLENIIKNPILSDLIG--GVDTVTLGDE 261 (337)
Q Consensus 214 d~-------~~l~~~~~-~G~tvi~t~H~~~~~~~~~d~v~~~ll~--~G~iv~~g~~ 261 (337)
|. +.+.++.+ .|.|||++||+.+++..+||+++ +++ +|+++..++.
T Consensus 163 D~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~--~l~~~~G~i~~~~~~ 218 (220)
T cd03293 163 DALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVV--VLSARPGRIVAEVEV 218 (220)
T ss_pred CHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEE--EEECCCCEEEEEEEe
Confidence 95 33555543 48999999999998889999999 888 7999987764
No 58
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=3.2e-29 Score=228.96 Aligned_cols=164 Identities=16% Similarity=0.170 Sum_probs=125.6
Q ss_pred EeeEEEEECC-ccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCe----------------------
Q 019702 97 IVGLTCRVGR-AVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKR---------------------- 153 (337)
Q Consensus 97 i~~l~~r~~~-~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~---------------------- 153 (337)
+++++++|+. .. .++++++.+.+|++++|+||||||||||+++|+|+++|+. +.
T Consensus 3 ~~~l~~~~~~~~~--~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~-G~i~~~g~~~~~~~~~~~~~~~~~ 79 (241)
T cd03256 3 VENLSKTYPNGKK--ALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTS-GSVLIDGTDINKLKGKALRQLRRQ 79 (241)
T ss_pred EeeEEEecCCccE--EEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCC-ceEEECCEeccccCHhHHHHHHhc
Confidence 5689999975 44 4999999999999999999999999999999999998763 33
Q ss_pred EEEEcCCcccccCCCCcc---------------------c----cc-------cc----chhccCCCcchhHHHHHHHHH
Q 019702 154 VVIVDTSNEIGGDGDIPH---------------------S----AI-------GT----ARRMQVPEPSLQHKVMIEAVE 197 (337)
Q Consensus 154 i~~v~~~~ei~~~~~~~~---------------------~----~~-------~~----~~~~~~~S~g~k~r~~ia~al 197 (337)
+.++.+...+.....+.+ . .+ +. .+....+|+||+||++||+|+
T Consensus 80 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al 159 (241)
T cd03256 80 IGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARAL 159 (241)
T ss_pred cEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHHHHHH
Confidence 333333221110000000 0 00 00 012334799999999999999
Q ss_pred hhCCcEEEEcCCCCHHHH-------HHHHHHHh-cCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHH
Q 019702 198 NHMPEVIIVDEIGTEAEA-------HACRSIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARA 265 (337)
Q Consensus 198 ~~~P~vlilDEp~~~ld~-------~~l~~~~~-~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~ 265 (337)
+.+|++||+||||+++|. +.+.++++ .|.|||++||+.+.+..+||+++ ++++|+++..|+++++.
T Consensus 160 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~--~l~~G~i~~~~~~~~~~ 233 (241)
T cd03256 160 MQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIV--GLKDGRIVFDGPPAELT 233 (241)
T ss_pred hcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE--EEECCEEEeecCHHHhh
Confidence 999999999999999995 34555554 48999999999999999999999 99999999999998864
No 59
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=3.2e-29 Score=228.67 Aligned_cols=165 Identities=14% Similarity=0.160 Sum_probs=127.7
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCe--------------------EEE
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKR--------------------VVI 156 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~--------------------i~~ 156 (337)
+++++++|+... .++++++.+++|++++|+||||||||||+++|+|+++|+. +. +.+
T Consensus 8 ~~~l~~~~~~~~--~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~-G~i~~~g~~~~~~~~~~~~~~~i~~ 84 (237)
T PRK11614 8 FDKVSAHYGKIQ--ALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATS-GRIVFDGKDITDWQTAKIMREAVAI 84 (237)
T ss_pred EEeEEEeeCCce--eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCC-ceEEECCEecCCCCHHHHHHhCEEE
Confidence 678999997544 4999999999999999999999999999999999998863 33 333
Q ss_pred EcCCcccccCCCC----------cc-cc-----------cc-c----chhccCCCcchhHHHHHHHHHhhCCcEEEEcCC
Q 019702 157 VDTSNEIGGDGDI----------PH-SA-----------IG-T----ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEI 209 (337)
Q Consensus 157 v~~~~ei~~~~~~----------~~-~~-----------~~-~----~~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp 209 (337)
+.+...+.....+ .. .. +. . ......+|+||+||++||+|++.+|++|++|||
T Consensus 85 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~illlDEP 164 (237)
T PRK11614 85 VPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEP 164 (237)
T ss_pred eccCcccCCCCcHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCc
Confidence 3332211100000 00 00 00 0 012334799999999999999999999999999
Q ss_pred CCHHHH-------HHHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHH
Q 019702 210 GTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (337)
Q Consensus 210 ~~~ld~-------~~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~ 266 (337)
|+++|. +.+.++.++|.|+|++||+.+++..+||+++ ++++|+++..|++++++.
T Consensus 165 t~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~--~l~~G~i~~~~~~~~~~~ 226 (237)
T PRK11614 165 SLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGY--VLENGHVVLEDTGDALLA 226 (237)
T ss_pred cccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEE--EEeCCEEEeeCCHHHHhc
Confidence 999995 3455556679999999999999999999999 999999999999998865
No 60
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.96 E-value=2.2e-29 Score=225.24 Aligned_cols=158 Identities=16% Similarity=0.182 Sum_probs=120.7
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCe-----------------EEEEcC
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKR-----------------VVIVDT 159 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~-----------------i~~v~~ 159 (337)
+++++++|+... .++++++.+++|++++|+||||||||||+++|+|+++|+. +. +.++.+
T Consensus 3 ~~~l~~~~~~~~--~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~-G~i~~~g~~~~~~~~~~~~i~~~~q 79 (208)
T cd03268 3 TNDLTKTYGKKR--VLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDS-GEITFDGKSYQKNIEALRRIGALIE 79 (208)
T ss_pred EEEEEEEECCeE--eEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCc-eEEEECCCcccchHHHHhhEEEecC
Confidence 578999997544 4999999999999999999999999999999999998763 33 333333
Q ss_pred CcccccCCCC-------------ccccccc-----------chhccCCCcchhHHHHHHHHHhhCCcEEEEcCCCCHHHH
Q 019702 160 SNEIGGDGDI-------------PHSAIGT-----------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEA 215 (337)
Q Consensus 160 ~~ei~~~~~~-------------~~~~~~~-----------~~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~~ld~ 215 (337)
...+.....+ ....+.. .+....+|+||+||+++|+|++.+|++|++||||+++|.
T Consensus 80 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~ 159 (208)
T cd03268 80 APGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDP 159 (208)
T ss_pred CCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCH
Confidence 3221110000 0000000 022345799999999999999999999999999999995
Q ss_pred H-------HHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEec
Q 019702 216 H-------ACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLG 259 (337)
Q Consensus 216 ~-------~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g 259 (337)
. .+.+++++|.|+|++||+.+++..+||+++ ++++|++++.|
T Consensus 160 ~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~--~l~~g~i~~~g 208 (208)
T cd03268 160 DGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIG--IINKGKLIEEG 208 (208)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEE--EEECCEEEecC
Confidence 3 345555678999999999999999999999 99999988654
No 61
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=3.8e-29 Score=234.75 Aligned_cols=169 Identities=17% Similarity=0.204 Sum_probs=130.0
Q ss_pred EeeEEEEECCcc---ccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCC--------------------Ce
Q 019702 97 IVGLTCRVGRAV---SGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ--------------------KR 153 (337)
Q Consensus 97 i~~l~~r~~~~~---~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~--------------------~~ 153 (337)
+++++++|+... ...++++++.+.+|++++|+||||||||||+++|+|+++|+.+ .+
T Consensus 5 ~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 84 (287)
T PRK13637 5 IENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIRKK 84 (287)
T ss_pred EEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHhhc
Confidence 678999997421 2359999999999999999999999999999999999988732 12
Q ss_pred EEEEcCCcccc-cCC-------------CCcccc-----------ccc------chhccCCCcchhHHHHHHHHHhhCCc
Q 019702 154 VVIVDTSNEIG-GDG-------------DIPHSA-----------IGT------ARRMQVPEPSLQHKVMIEAVENHMPE 202 (337)
Q Consensus 154 i~~v~~~~ei~-~~~-------------~~~~~~-----------~~~------~~~~~~~S~g~k~r~~ia~al~~~P~ 202 (337)
+.|+.+..... +.. .+.... ++. .+....+|+||+||++||+||+.+|+
T Consensus 85 ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~~P~ 164 (287)
T PRK13637 85 VGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPK 164 (287)
T ss_pred eEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 44554432110 000 000000 000 12234579999999999999999999
Q ss_pred EEEEcCCCCHHHH-------HHHHHHHhc-CCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHh
Q 019702 203 VIIVDEIGTEAEA-------HACRSIAER-GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (337)
Q Consensus 203 vlilDEp~~~ld~-------~~l~~~~~~-G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~ 267 (337)
+||+||||+++|. +.+.+++++ |.|||++||+++++..+||+++ ++++|++++.|++++++..
T Consensus 165 llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~--~l~~G~i~~~g~~~~~~~~ 235 (287)
T PRK13637 165 ILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRII--VMNKGKCELQGTPREVFKE 235 (287)
T ss_pred EEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE--EEECCEEEEECCHHHHHhC
Confidence 9999999999995 345566554 8999999999999989999999 9999999999999998764
No 62
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.96 E-value=3.7e-29 Score=224.53 Aligned_cols=159 Identities=18% Similarity=0.265 Sum_probs=120.7
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCC----------------CeEEEEcCC
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ----------------KRVVIVDTS 160 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~----------------~~i~~v~~~ 160 (337)
+++++++|+.... ++++++.+++|++++|+||||||||||+++|+|+++|+.+ ..+.++.+.
T Consensus 3 ~~~l~~~~~~~~~--l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~~q~ 80 (213)
T cd03301 3 LENVTKRFGNVTA--LDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMVFQN 80 (213)
T ss_pred EEeeEEEECCeee--eeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEEecC
Confidence 5689999976544 9999999999999999999999999999999999987632 123444433
Q ss_pred cccccCCCC-------------cccc----ccc-----------chhccCCCcchhHHHHHHHHHhhCCcEEEEcCCCCH
Q 019702 161 NEIGGDGDI-------------PHSA----IGT-----------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTE 212 (337)
Q Consensus 161 ~ei~~~~~~-------------~~~~----~~~-----------~~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~~ 212 (337)
..+.....+ .... +.. .+....+|+||+||+++|+|++.+|++|++||||++
T Consensus 81 ~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEPt~~ 160 (213)
T cd03301 81 YALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSN 160 (213)
T ss_pred hhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence 221110000 0000 000 012334799999999999999999999999999999
Q ss_pred HHHH-------HHHHHHh-cCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEec
Q 019702 213 AEAH-------ACRSIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLG 259 (337)
Q Consensus 213 ld~~-------~l~~~~~-~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g 259 (337)
+|.. .+.++++ .|.|||++||+.+++..+||+++ ++++|++++.|
T Consensus 161 LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~--~l~~g~~~~~g 213 (213)
T cd03301 161 LDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIA--VMNDGQIQQIG 213 (213)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEE--EEECCEEEecC
Confidence 9953 4555554 48999999999999999999999 89999998765
No 63
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=5e-29 Score=234.32 Aligned_cols=169 Identities=17% Similarity=0.173 Sum_probs=129.8
Q ss_pred EeeEEEEECCcc---ccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCC----------------------
Q 019702 97 IVGLTCRVGRAV---SGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ---------------------- 151 (337)
Q Consensus 97 i~~l~~r~~~~~---~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~---------------------- 151 (337)
+++++++|+... ...++++++.+++|++++|+||||||||||+++|+|+++|+.+
T Consensus 5 ~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 84 (290)
T PRK13634 5 FQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKPLR 84 (290)
T ss_pred EEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHH
Confidence 679999997421 2359999999999999999999999999999999999988732
Q ss_pred CeEEEEcCCcc--cccC------------CCCcccc-----------ccc-----chhccCCCcchhHHHHHHHHHhhCC
Q 019702 152 KRVVIVDTSNE--IGGD------------GDIPHSA-----------IGT-----ARRMQVPEPSLQHKVMIEAVENHMP 201 (337)
Q Consensus 152 ~~i~~v~~~~e--i~~~------------~~~~~~~-----------~~~-----~~~~~~~S~g~k~r~~ia~al~~~P 201 (337)
..+.++.+... +... ...+... ++. .+....+|+||+||++||+||+++|
T Consensus 85 ~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~~~P 164 (290)
T PRK13634 85 KKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEP 164 (290)
T ss_pred hhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHHcCC
Confidence 12444444321 1000 0000000 000 0223457999999999999999999
Q ss_pred cEEEEcCCCCHHHH-------HHHHHHHhc-CCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHh
Q 019702 202 EVIIVDEIGTEAEA-------HACRSIAER-GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (337)
Q Consensus 202 ~vlilDEp~~~ld~-------~~l~~~~~~-G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~ 267 (337)
++||+||||+++|. +.+.+++++ |.|||++||+++++..+||+++ +|++|++++.|++++++..
T Consensus 165 ~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~--~l~~G~i~~~g~~~~~~~~ 236 (290)
T PRK13634 165 EVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIV--VMHKGTVFLQGTPREIFAD 236 (290)
T ss_pred CEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE--EEECCEEEEECCHHHHhcC
Confidence 99999999999995 345556554 9999999999999999999999 9999999999999998764
No 64
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.96 E-value=1.8e-29 Score=227.04 Aligned_cols=156 Identities=15% Similarity=0.192 Sum_probs=116.6
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeE----------------------
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRV---------------------- 154 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i---------------------- 154 (337)
+++++++|+......++++++.+++|++++|+||||||||||+++|+|+++|+. +.|
T Consensus 4 ~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~-G~i~~~g~~~~~~~~~~~~~~~~~i 82 (216)
T TIGR00960 4 FEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTR-GKIRFNGQDLTRLRGREIPFLRRHI 82 (216)
T ss_pred EEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc-eEEEECCEehhhcChhHHHHHHHhc
Confidence 678999996432225999999999999999999999999999999999998863 333
Q ss_pred EEEcCCcccccCCCCccc-----------------cc-------cc----chhccCCCcchhHHHHHHHHHhhCCcEEEE
Q 019702 155 VIVDTSNEIGGDGDIPHS-----------------AI-------GT----ARRMQVPEPSLQHKVMIEAVENHMPEVIIV 206 (337)
Q Consensus 155 ~~v~~~~ei~~~~~~~~~-----------------~~-------~~----~~~~~~~S~g~k~r~~ia~al~~~P~vlil 206 (337)
.++.+...+.....+.++ .+ +. .+....+|+||+||+++|+|++.+|++|++
T Consensus 83 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llll 162 (216)
T TIGR00960 83 GMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHKPPLLLA 162 (216)
T ss_pred eEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 333332211110000000 00 00 022345799999999999999999999999
Q ss_pred cCCCCHHHH-------HHHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceE
Q 019702 207 DEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDT 255 (337)
Q Consensus 207 DEp~~~ld~-------~~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~i 255 (337)
||||+++|. +.+.+++++|.|||++||+.+++..+||+++ ++++|++
T Consensus 163 DEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~--~l~~G~i 216 (216)
T TIGR00960 163 DEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTL--TLSRGRL 216 (216)
T ss_pred eCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEE--EEeCCcC
Confidence 999999995 3455555668999999999999988999999 8888763
No 65
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=5e-29 Score=228.19 Aligned_cols=166 Identities=14% Similarity=0.133 Sum_probs=128.2
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCe-------------------EEEE
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKR-------------------VVIV 157 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~-------------------i~~v 157 (337)
+++++++|+... .++++++.+.+|++++|+||||||||||+++|+|+++|+. +. +.++
T Consensus 6 ~~~l~~~~~~~~--~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~-G~i~~~g~~i~~~~~~~~~~~i~~~ 82 (241)
T PRK14250 6 FKEVSYSSFGKE--ILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTE-GSILIDGVDIKTIDVIDLRRKIGMV 82 (241)
T ss_pred EEeEEEEeCCee--eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC-cEEEECCEEhhhcChHHhhhcEEEE
Confidence 678999997544 4999999999999999999999999999999999998873 33 3333
Q ss_pred cCCcccccC--------C-CCc---ccc-------ccc-----chhccCCCcchhHHHHHHHHHhhCCcEEEEcCCCCHH
Q 019702 158 DTSNEIGGD--------G-DIP---HSA-------IGT-----ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEA 213 (337)
Q Consensus 158 ~~~~ei~~~--------~-~~~---~~~-------~~~-----~~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~~l 213 (337)
.+...+... . ... ... ++. .+....+|+||+||++||+|++.+|++||+|||++++
T Consensus 83 ~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~L 162 (241)
T PRK14250 83 FQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSAL 162 (241)
T ss_pred ecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 333221100 0 000 000 000 1223457999999999999999999999999999999
Q ss_pred HHH-------HHHHHHh-cCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHh
Q 019702 214 EAH-------ACRSIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (337)
Q Consensus 214 d~~-------~l~~~~~-~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~ 267 (337)
|.. .+..+++ .|.|||++||+.+++..+||+++ ++++|+++..|++++++..
T Consensus 163 D~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~--~l~~G~i~~~~~~~~~~~~ 222 (241)
T PRK14250 163 DPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTA--FLNKGILVEYAKTYDFFTN 222 (241)
T ss_pred CHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEE--EEeCCEEEEeCCHHHHhcC
Confidence 953 4555555 48999999999999989999999 9999999999999988753
No 66
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=8.8e-29 Score=235.49 Aligned_cols=168 Identities=13% Similarity=0.159 Sum_probs=128.6
Q ss_pred EeeEEEEECCcc---ccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEE------------------
Q 019702 97 IVGLTCRVGRAV---SGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVV------------------ 155 (337)
Q Consensus 97 i~~l~~r~~~~~---~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~------------------ 155 (337)
+++++++|.... ..+++++++.+++|++++|+|+||||||||+++|+|++.|+. +.|.
T Consensus 24 ~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~-G~I~i~g~~~~~~~~~~~~~~~ 102 (320)
T PRK13631 24 VKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKY-GTIQVGDIYIGDKKNNHELITN 102 (320)
T ss_pred EEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC-CeEEECCEEccccccccccccc
Confidence 668999997431 236999999999999999999999999999999999998873 3332
Q ss_pred -----------------EEcCCccc-ccCCC-------------Ccccc-----------ccc-----chhccCCCcchh
Q 019702 156 -----------------IVDTSNEI-GGDGD-------------IPHSA-----------IGT-----ARRMQVPEPSLQ 188 (337)
Q Consensus 156 -----------------~v~~~~ei-~~~~~-------------~~~~~-----------~~~-----~~~~~~~S~g~k 188 (337)
++.+..+. .+... .+... ++. .+....+|+||+
T Consensus 103 ~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqk 182 (320)
T PRK13631 103 PYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLSGGQK 182 (320)
T ss_pred ccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCHHHH
Confidence 33222110 00000 00000 000 012334799999
Q ss_pred HHHHHHHHHhhCCcEEEEcCCCCHHHH-------HHHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCH
Q 019702 189 HKVMIEAVENHMPEVIIVDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDE 261 (337)
Q Consensus 189 ~r~~ia~al~~~P~vlilDEp~~~ld~-------~~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~ 261 (337)
||++||+||+++|++||+||||+++|. +.+.++.++|.|||++||+++++..+||+++ +|++|+++..|++
T Consensus 183 qRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~--vl~~G~i~~~g~~ 260 (320)
T PRK13631 183 RRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVI--VMDKGKILKTGTP 260 (320)
T ss_pred HHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEE--EEECCEEEEeCCH
Confidence 999999999999999999999999995 3455555679999999999998889999999 9999999999999
Q ss_pred HHHHHh
Q 019702 262 EARARR 267 (337)
Q Consensus 262 ~~~~~~ 267 (337)
++++..
T Consensus 261 ~~~~~~ 266 (320)
T PRK13631 261 YEIFTD 266 (320)
T ss_pred HHHhcC
Confidence 998864
No 67
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.96 E-value=5.7e-29 Score=227.42 Aligned_cols=166 Identities=14% Similarity=0.165 Sum_probs=127.7
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCe---------------------EE
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKR---------------------VV 155 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~---------------------i~ 155 (337)
+++++++|+... .++++++.+.+|++++|+||||||||||+++|+|+++|+. +. +.
T Consensus 4 ~~~l~~~~~~~~--il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~-G~i~~~g~~~~~~~~~~~~~~~~i~ 80 (240)
T PRK09493 4 FKNVSKHFGPTQ--VLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITS-GDLIVDGLKVNDPKVDERLIRQEAG 80 (240)
T ss_pred EEeEEEEECCeE--EeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCc-eEEEECCEECCcCChhHHHHhhceE
Confidence 678999997544 4999999999999999999999999999999999998763 32 33
Q ss_pred EEcCCcccccCCCCccc--------------c----cc-c----------chhccCCCcchhHHHHHHHHHhhCCcEEEE
Q 019702 156 IVDTSNEIGGDGDIPHS--------------A----IG-T----------ARRMQVPEPSLQHKVMIEAVENHMPEVIIV 206 (337)
Q Consensus 156 ~v~~~~ei~~~~~~~~~--------------~----~~-~----------~~~~~~~S~g~k~r~~ia~al~~~P~vlil 206 (337)
++.+...+.....+.++ . +. . .+....+|+||+||++||+|++.+|++|++
T Consensus 81 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~llll 160 (240)
T PRK09493 81 MVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLF 160 (240)
T ss_pred EEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcCCCEEEE
Confidence 33332211110000000 0 00 0 022334699999999999999999999999
Q ss_pred cCCCCHHHH-------HHHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHh
Q 019702 207 DEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (337)
Q Consensus 207 DEp~~~ld~-------~~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~ 267 (337)
||||+++|. +.+.++.++|.|+|++||+.+++..+||+++ ++++|+++..|+++++.+.
T Consensus 161 DEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~--~l~~G~i~~~g~~~~~~~~ 226 (240)
T PRK09493 161 DEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLI--FIDKGRIAEDGDPQVLIKN 226 (240)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEE--EEECCEEEeeCCHHHHhcC
Confidence 999999995 3455556678999999999999989999999 9999999999999887653
No 68
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.96 E-value=5.5e-29 Score=227.09 Aligned_cols=165 Identities=15% Similarity=0.227 Sum_probs=126.0
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCe------------------EEEEc
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKR------------------VVIVD 158 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~------------------i~~v~ 158 (337)
+++++++|+... .++++++.+.+|++++|+||||||||||+++|+|+++|+. +. +.++.
T Consensus 4 ~~~l~~~~~~~~--~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~-G~i~~~g~~i~~~~~~~~~~i~~~~ 80 (236)
T TIGR03864 4 VAGLSFAYGARR--ALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQE-GQISVAGHDLRRAPRAALARLGVVF 80 (236)
T ss_pred EEeeEEEECCEE--EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCc-eEEEECCEEcccCChhhhhhEEEeC
Confidence 568999997654 4999999999999999999999999999999999998873 33 33333
Q ss_pred CCcccccCCC-------------Cccc----c-------ccc----chhccCCCcchhHHHHHHHHHhhCCcEEEEcCCC
Q 019702 159 TSNEIGGDGD-------------IPHS----A-------IGT----ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIG 210 (337)
Q Consensus 159 ~~~ei~~~~~-------------~~~~----~-------~~~----~~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~ 210 (337)
+...+..... .... . ++. .+....+|+||+||+++|+|++.+|+++++|||+
T Consensus 81 q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~ 160 (236)
T TIGR03864 81 QQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPT 160 (236)
T ss_pred CCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 3322111000 0000 0 000 0223347999999999999999999999999999
Q ss_pred CHHHH-------HHHHHHHh-cCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHh
Q 019702 211 TEAEA-------HACRSIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (337)
Q Consensus 211 ~~ld~-------~~l~~~~~-~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~ 267 (337)
+++|. +.+.++++ +|.|+|++||+.+++.. ||+++ ++++|+++..|+++++...
T Consensus 161 ~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~-~d~i~--~l~~G~i~~~~~~~~~~~~ 222 (236)
T TIGR03864 161 VGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEA-DDRLV--VLHRGRVLADGAAAELRGA 222 (236)
T ss_pred cCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhh-CCEEE--EEeCCeEEEeCCHHHHHHH
Confidence 99995 34555553 58999999999998874 99999 9999999999999888754
No 69
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.96 E-value=3.9e-29 Score=225.47 Aligned_cols=164 Identities=16% Similarity=0.200 Sum_probs=123.5
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCe------------------EEEEc
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKR------------------VVIVD 158 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~------------------i~~v~ 158 (337)
+++++++|+......++++++.+++|++++|+||||||||||+++|+|+++|+. +. +.++.
T Consensus 3 ~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~-G~i~~~g~~~~~~~~~~~~~i~~v~ 81 (220)
T cd03263 3 IRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTS-GTAYINGYSIRTDRKAARQSLGYCP 81 (220)
T ss_pred EEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCC-cEEEECCEecccchHHHhhhEEEec
Confidence 568999997521224999999999999999999999999999999999998873 33 33333
Q ss_pred CCcccccCCC-------------Ccccc----c-------cc----chhccCCCcchhHHHHHHHHHhhCCcEEEEcCCC
Q 019702 159 TSNEIGGDGD-------------IPHSA----I-------GT----ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIG 210 (337)
Q Consensus 159 ~~~ei~~~~~-------------~~~~~----~-------~~----~~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~ 210 (337)
+...+..... .+... + +. ......+|+||+||++||+|++.+|++||+||||
T Consensus 82 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~ 161 (220)
T cd03263 82 QFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPT 161 (220)
T ss_pred CcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEECCCC
Confidence 3221110000 00000 0 00 0223447999999999999999999999999999
Q ss_pred CHHHHH-------HHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHH
Q 019702 211 TEAEAH-------ACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEAR 264 (337)
Q Consensus 211 ~~ld~~-------~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~ 264 (337)
+++|.. .+.++++ +.|+|++||+.+.+..+||+++ ++++|+++..|+++++
T Consensus 162 ~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~~~~~~~d~i~--~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 162 SGLDPASRRAIWDLILEVRK-GRSIILTTHSMDEAEALCDRIA--IMSDGKLRCIGSPQEL 219 (220)
T ss_pred CCCCHHHHHHHHHHHHHHhc-CCEEEEEcCCHHHHHHhcCEEE--EEECCEEEecCCHHHc
Confidence 999953 3444443 6899999999999989999999 9999999999888764
No 70
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=4.7e-29 Score=228.16 Aligned_cols=166 Identities=13% Similarity=0.110 Sum_probs=127.5
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCC-------------------CeEEEE
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ-------------------KRVVIV 157 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~-------------------~~i~~v 157 (337)
+++++++|+... .++++++.+++|++++|+||||||||||+++|+|+++|+.+ ..+.++
T Consensus 6 ~~~l~~~~~~~~--~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~ 83 (241)
T PRK10895 6 AKNLAKAYKGRR--VVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIGYL 83 (241)
T ss_pred EeCcEEEeCCEE--EEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeEEe
Confidence 668999997644 49999999999999999999999999999999999988632 123344
Q ss_pred cCCcccccCCCC--------------cccc----c-------cc----chhccCCCcchhHHHHHHHHHhhCCcEEEEcC
Q 019702 158 DTSNEIGGDGDI--------------PHSA----I-------GT----ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDE 208 (337)
Q Consensus 158 ~~~~ei~~~~~~--------------~~~~----~-------~~----~~~~~~~S~g~k~r~~ia~al~~~P~vlilDE 208 (337)
.+...+.....+ .... . +. ......+|+||+||+++|+|++.+|++|++||
T Consensus 84 ~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE 163 (241)
T PRK10895 84 PQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDE 163 (241)
T ss_pred ccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 333221110000 0000 0 00 02234479999999999999999999999999
Q ss_pred CCCHHHH-------HHHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHH
Q 019702 209 IGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (337)
Q Consensus 209 p~~~ld~-------~~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~ 266 (337)
||+++|. +.+..+.++|.|+|++||+.+.+..+||+++ ++++|+++..|+++++..
T Consensus 164 Pt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~--~l~~G~i~~~~~~~~~~~ 226 (241)
T PRK10895 164 PFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAY--IVSQGHLIAHGTPTEILQ 226 (241)
T ss_pred CcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEE--EEeCCeEEeeCCHHHHhc
Confidence 9999995 3345556679999999999998989999999 999999999999988764
No 71
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=4.5e-29 Score=232.76 Aligned_cols=165 Identities=15% Similarity=0.172 Sum_probs=126.6
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCC------------------CeEEEEc
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ------------------KRVVIVD 158 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~------------------~~i~~v~ 158 (337)
+++++++|.... ..++++++.+++|++++|+||||||||||+++|+|+++|+.+ ..+.++.
T Consensus 7 ~~~l~~~~~~~~-~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~ 85 (274)
T PRK13647 7 VEDLHFRYKDGT-KALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVGLVF 85 (274)
T ss_pred EEEEEEEeCCCC-eeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEEEEe
Confidence 679999996322 249999999999999999999999999999999999988732 1244444
Q ss_pred CCcc--cccC-------C-----CCcccc----c-------cc----chhccCCCcchhHHHHHHHHHhhCCcEEEEcCC
Q 019702 159 TSNE--IGGD-------G-----DIPHSA----I-------GT----ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEI 209 (337)
Q Consensus 159 ~~~e--i~~~-------~-----~~~~~~----~-------~~----~~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp 209 (337)
+... +... . .+.... + +. .+....+|+||+||++||+||+.+|++|++|||
T Consensus 86 q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEP 165 (274)
T PRK13647 86 QDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEP 165 (274)
T ss_pred cChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECC
Confidence 4321 1100 0 000000 0 00 022345799999999999999999999999999
Q ss_pred CCHHHH-------HHHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHH
Q 019702 210 GTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEAR 264 (337)
Q Consensus 210 ~~~ld~-------~~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~ 264 (337)
|+++|. +.+..++++|.|||++||+++.+..+||+++ ++++|++++.|+++.+
T Consensus 166 t~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~--~l~~G~i~~~g~~~~~ 225 (274)
T PRK13647 166 MAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVI--VLKEGRVLAEGDKSLL 225 (274)
T ss_pred CcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEE--EEECCEEEEECCHHHh
Confidence 999995 3455666669999999999999989999999 9999999999998753
No 72
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.96 E-value=4.3e-29 Score=232.29 Aligned_cols=165 Identities=16% Similarity=0.210 Sum_probs=127.0
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCe----------------------E
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKR----------------------V 154 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~----------------------i 154 (337)
+++++++|+.... ++++++.+++|++++|+||||||||||+++|+|+++|+. +. +
T Consensus 10 ~~~l~~~~~~~~i--l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~-G~i~~~g~~i~~~~~~~~~~~~~~i 86 (269)
T PRK11831 10 MRGVSFTRGNRCI--FDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDH-GEILFDGENIPAMSRSRLYTVRKRM 86 (269)
T ss_pred EeCeEEEECCEEE--EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC-ceEEECCEEccccChhhHHHHhhcE
Confidence 6789999975544 999999999999999999999999999999999998863 22 3
Q ss_pred EEEcCCcccccCCCCcccc-------------------------ccc----chhccCCCcchhHHHHHHHHHhhCCcEEE
Q 019702 155 VIVDTSNEIGGDGDIPHSA-------------------------IGT----ARRMQVPEPSLQHKVMIEAVENHMPEVII 205 (337)
Q Consensus 155 ~~v~~~~ei~~~~~~~~~~-------------------------~~~----~~~~~~~S~g~k~r~~ia~al~~~P~vli 205 (337)
.++++...+.....+.++. ++. .+....+|+||+||++||+|++.+|++||
T Consensus 87 ~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lll 166 (269)
T PRK11831 87 SMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIM 166 (269)
T ss_pred EEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 3333322111000000000 000 01234579999999999999999999999
Q ss_pred EcCCCCHHHH-------HHHHHHHhc-CCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHH
Q 019702 206 VDEIGTEAEA-------HACRSIAER-GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (337)
Q Consensus 206 lDEp~~~ld~-------~~l~~~~~~-G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~ 266 (337)
+||||+++|. +.+.++.++ |.|||++||+.+++..+||+++ ++++|+++..|++++++.
T Consensus 167 LDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~--~l~~G~i~~~g~~~~~~~ 233 (269)
T PRK11831 167 FDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAY--IVADKKIVAHGSAQALQA 233 (269)
T ss_pred EcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEE--EEECCEEEEeCCHHHHhc
Confidence 9999999995 345555544 8999999999999999999999 999999999999998765
No 73
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=2.3e-29 Score=234.14 Aligned_cols=166 Identities=16% Similarity=0.191 Sum_probs=126.9
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCe-----------------------
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKR----------------------- 153 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~----------------------- 153 (337)
+.+++++|+.... ++++++.+++|++++|+||||||||||+++|+|+++|+. +.
T Consensus 27 ~~~~~~~~~~~~i--l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~-G~i~i~g~~~~~~~~~~~~~~~~~~ 103 (269)
T cd03294 27 KEEILKKTGQTVG--VNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTS-GKVLIDGQDIAAMSRKELRELRRKK 103 (269)
T ss_pred hhhhhhhcCCceE--eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCC-eEEEECCEEccccChhhhhhhhcCc
Confidence 4478888876655 899999999999999999999999999999999998863 22
Q ss_pred EEEEcCCcccccCCCC-------------ccc----cc-------cc----chhccCCCcchhHHHHHHHHHhhCCcEEE
Q 019702 154 VVIVDTSNEIGGDGDI-------------PHS----AI-------GT----ARRMQVPEPSLQHKVMIEAVENHMPEVII 205 (337)
Q Consensus 154 i~~v~~~~ei~~~~~~-------------~~~----~~-------~~----~~~~~~~S~g~k~r~~ia~al~~~P~vli 205 (337)
+.++.+...+.....+ ... .+ +. .+....+|+||+||++||+|++.+|++||
T Consensus 104 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~p~ill 183 (269)
T cd03294 104 ISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILL 183 (269)
T ss_pred EEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 3333332221110000 000 00 00 02234579999999999999999999999
Q ss_pred EcCCCCHHHHH-------HHHHHHh-cCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHh
Q 019702 206 VDEIGTEAEAH-------ACRSIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (337)
Q Consensus 206 lDEp~~~ld~~-------~l~~~~~-~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~ 267 (337)
+||||+++|.. .+.++.+ .|.|+|++||+.+++..+||+++ ++++|+++..|++++++..
T Consensus 184 LDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~--~l~~G~i~~~g~~~~~~~~ 251 (269)
T cd03294 184 MDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIA--IMKDGRLVQVGTPEEILTN 251 (269)
T ss_pred EcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEE--EEECCEEEEeCCHHHHHhC
Confidence 99999999953 4555554 48999999999999989999999 9999999999999988753
No 74
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.96 E-value=4.3e-29 Score=224.87 Aligned_cols=160 Identities=21% Similarity=0.195 Sum_probs=120.8
Q ss_pred EeeEEEEECCcc--ccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCe------------------EEE
Q 019702 97 IVGLTCRVGRAV--SGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKR------------------VVI 156 (337)
Q Consensus 97 i~~l~~r~~~~~--~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~------------------i~~ 156 (337)
+++++++|+... ...++++++.+++|++++|+||||||||||+++|+|+++|+. +. +.+
T Consensus 4 ~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~-G~i~~~g~~~~~~~~~~~~~i~~ 82 (218)
T cd03266 4 ADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDA-GFATVDGFDVVKEPAEARRRLGF 82 (218)
T ss_pred EEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCC-ceEEECCEEcccCHHHHHhhEEE
Confidence 568999997541 124999999999999999999999999999999999998873 33 333
Q ss_pred EcCCcccccCCCCccc-------------c----cc-c----------chhccCCCcchhHHHHHHHHHhhCCcEEEEcC
Q 019702 157 VDTSNEIGGDGDIPHS-------------A----IG-T----------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDE 208 (337)
Q Consensus 157 v~~~~ei~~~~~~~~~-------------~----~~-~----------~~~~~~~S~g~k~r~~ia~al~~~P~vlilDE 208 (337)
+.+...+.....+.++ . +. . .+....+|+||+||+++|+|++.+|++|++||
T Consensus 83 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDE 162 (218)
T cd03266 83 VSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDE 162 (218)
T ss_pred ecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 3333221110000000 0 00 0 02233479999999999999999999999999
Q ss_pred CCCHHHH-------HHHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEec
Q 019702 209 IGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLG 259 (337)
Q Consensus 209 p~~~ld~-------~~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g 259 (337)
||+++|. +.+.++.++|.|+|++||+.+++..+||+++ ++++|+++..|
T Consensus 163 Pt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~--~l~~G~i~~~~ 218 (218)
T cd03266 163 PTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVV--VLHRGRVVYEG 218 (218)
T ss_pred CCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEE--EEECCEEeecC
Confidence 9999994 3455566678999999999999999999999 99999987653
No 75
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.96 E-value=5.3e-29 Score=226.15 Aligned_cols=163 Identities=17% Similarity=0.202 Sum_probs=125.7
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCe--------------------EEE
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKR--------------------VVI 156 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~--------------------i~~ 156 (337)
+++++++|+... .++++++.+++|++++|+||||||||||+++|+|+++|+. +. +.+
T Consensus 3 ~~~l~~~~~~~~--~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~-G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (230)
T TIGR03410 3 VSNLNVYYGQSH--ILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKS-GSIRLDGEDITKLPPHERARAGIAY 79 (230)
T ss_pred EEeEEEEeCCeE--EecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC-CEEEECCEECCCCCHHHHHHhCeEE
Confidence 578999997654 4999999999999999999999999999999999998863 33 333
Q ss_pred EcCCcccccCCCCcc-------------ccc-cc------------chhccCCCcchhHHHHHHHHHhhCCcEEEEcCCC
Q 019702 157 VDTSNEIGGDGDIPH-------------SAI-GT------------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIG 210 (337)
Q Consensus 157 v~~~~ei~~~~~~~~-------------~~~-~~------------~~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~ 210 (337)
+.+...+.....+.+ ... .. ......+|+||+||++||+|++.+|++|++||||
T Consensus 80 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~illlDEPt 159 (230)
T TIGR03410 80 VPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPT 159 (230)
T ss_pred eccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCc
Confidence 333221110000000 000 00 0122347999999999999999999999999999
Q ss_pred CHHHH-------HHHHHHHhc-CCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHH
Q 019702 211 TEAEA-------HACRSIAER-GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEAR 264 (337)
Q Consensus 211 ~~ld~-------~~l~~~~~~-G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~ 264 (337)
+++|. +.+.+++++ |.|+|++||+.+++..+||+++ ++++|+++..|+++++
T Consensus 160 ~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~--~l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 160 EGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYY--VMERGRVVASGAGDEL 219 (230)
T ss_pred ccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEE--EEECCEEEEECCHHHc
Confidence 99995 345555554 8999999999999999999999 9999999999999886
No 76
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.96 E-value=2.6e-29 Score=242.30 Aligned_cols=162 Identities=15% Similarity=0.200 Sum_probs=123.6
Q ss_pred EECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCC----------------------CeEEEEcCC
Q 019702 103 RVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ----------------------KRVVIVDTS 160 (337)
Q Consensus 103 r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~----------------------~~i~~v~~~ 160 (337)
+|+.... ++++++.+++|++++|+|||||||||||++|+|+++|+.+ ..+.++.+.
T Consensus 2 ~~~~~~~--l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~ 79 (363)
T TIGR01186 2 KTGGKKG--VNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQ 79 (363)
T ss_pred ccCCcee--EEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECC
Confidence 3444443 8999999999999999999999999999999999998732 134444443
Q ss_pred cccccCCCCccccc------c------------c----------chhccCCCcchhHHHHHHHHHhhCCcEEEEcCCCCH
Q 019702 161 NEIGGDGDIPHSAI------G------------T----------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTE 212 (337)
Q Consensus 161 ~ei~~~~~~~~~~~------~------------~----------~~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~~ 212 (337)
..+.....+.++.. + . .+....+|+||+||++||+||+.+|++|++|||+++
T Consensus 80 ~~l~~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~sa 159 (363)
T TIGR01186 80 FALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSA 159 (363)
T ss_pred CcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 22211101100000 0 0 022345799999999999999999999999999999
Q ss_pred HHH-------HHHHHHHh-cCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHhh
Q 019702 213 AEA-------HACRSIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARRC 268 (337)
Q Consensus 213 ld~-------~~l~~~~~-~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~~ 268 (337)
+|. +.+..+.+ .|.|||++||+++++..+||+++ +|.+|+++..|+|++++..+
T Consensus 160 LD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~--vl~~G~iv~~g~~~ei~~~p 221 (363)
T TIGR01186 160 LDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIV--IMKAGEIVQVGTPDEILRNP 221 (363)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE--EEeCCEEEeeCCHHHHHhCc
Confidence 995 33555554 48999999999999999999999 99999999999999988653
No 77
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.96 E-value=3e-29 Score=224.04 Aligned_cols=156 Identities=19% Similarity=0.188 Sum_probs=118.6
Q ss_pred EeeEEEEECC-ccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCC---------------CeEEEEcCC
Q 019702 97 IVGLTCRVGR-AVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ---------------KRVVIVDTS 160 (337)
Q Consensus 97 i~~l~~r~~~-~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~---------------~~i~~v~~~ 160 (337)
+++++++|+. .. .++++++.+++|++++|+|||||||||||++|+|+++|+.+ .++.++.+.
T Consensus 2 ~~~l~~~~~~~~~--~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~ 79 (205)
T cd03226 2 IENISFSYKKGTE--ILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQD 79 (205)
T ss_pred cccEEEEeCCcCc--eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEecC
Confidence 4689999976 44 49999999999999999999999999999999999988732 124444443
Q ss_pred ccc-ccCCCC-----------cc--ccccc-----------chhccCCCcchhHHHHHHHHHhhCCcEEEEcCCCCHHHH
Q 019702 161 NEI-GGDGDI-----------PH--SAIGT-----------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEA 215 (337)
Q Consensus 161 ~ei-~~~~~~-----------~~--~~~~~-----------~~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~~ld~ 215 (337)
... .+...+ .. ..+.. .+....+|+||+||+++|+|++.+|++|++||||+++|.
T Consensus 80 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~ 159 (205)
T cd03226 80 VDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDY 159 (205)
T ss_pred hhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCH
Confidence 211 000000 00 00000 122345799999999999999999999999999999995
Q ss_pred -------HHHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEE
Q 019702 216 -------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTV 256 (337)
Q Consensus 216 -------~~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv 256 (337)
+.+.+++++|.|+|++||+.+.+..+||+++ ++++|++|
T Consensus 160 ~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~--~l~~G~iv 205 (205)
T cd03226 160 KNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVL--LLANGAIV 205 (205)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEE--EEECCEEC
Confidence 3455555678999999999999988999999 89999864
No 78
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=4.1e-29 Score=217.59 Aligned_cols=152 Identities=16% Similarity=0.254 Sum_probs=114.6
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEcCC---------cccccCC
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTS---------NEIGGDG 167 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~~~---------~ei~~~~ 167 (337)
+++++++|.... .++++++.+.+|++++|+||||||||||+++|+|+++|. .+.+.+-... ..+++..
T Consensus 3 ~~~l~~~~~~~~--~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~-~G~i~~~g~~~~~~~~~~~~~i~~~~ 79 (173)
T cd03230 3 VRNLSKRYGKKT--ALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPD-SGEIKVLGKDIKKEPEEVKRRIGYLP 79 (173)
T ss_pred EEEEEEEECCee--eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC-CeEEEECCEEcccchHhhhccEEEEe
Confidence 568999997543 499999999999999999999999999999999999886 3444332110 0111110
Q ss_pred CCcccccccchhcc--CCCcchhHHHHHHHHHhhCCcEEEEcCCCCHHHH-------HHHHHHHhcCCeEEEEEcCcchh
Q 019702 168 DIPHSAIGTARRMQ--VPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLE 238 (337)
Q Consensus 168 ~~~~~~~~~~~~~~--~~S~g~k~r~~ia~al~~~P~vlilDEp~~~ld~-------~~l~~~~~~G~tvi~t~H~~~~~ 238 (337)
.-+. .+....-.+ .+|+||+||+++|+|++.+|++|++||||+++|. +.+.++.++|.|+|++||+.+++
T Consensus 80 q~~~-~~~~~tv~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~ 158 (173)
T cd03230 80 EEPS-LYENLTVRENLKLSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEA 158 (173)
T ss_pred cCCc-cccCCcHHHHhhcCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHH
Confidence 0000 000000001 1899999999999999999999999999999994 44566666689999999999999
Q ss_pred HHhhchHHHHHhcCce
Q 019702 239 NIIKNPILSDLIGGVD 254 (337)
Q Consensus 239 ~~~~d~v~~~ll~~G~ 254 (337)
..+||+++ ++++|+
T Consensus 159 ~~~~d~i~--~l~~g~ 172 (173)
T cd03230 159 ERLCDRVA--ILNNGR 172 (173)
T ss_pred HHhCCEEE--EEeCCC
Confidence 88999999 888775
No 79
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.96 E-value=7.5e-29 Score=229.32 Aligned_cols=166 Identities=22% Similarity=0.298 Sum_probs=127.7
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCC------------------CeEEEEc
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ------------------KRVVIVD 158 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~------------------~~i~~v~ 158 (337)
+++++++|+.... ++++++.+.+|++++|+||||||||||+++|+|+++|+.+ ..+.++.
T Consensus 5 ~~~l~~~~~~~~i--l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~ 82 (258)
T PRK13548 5 ARNLSVRLGGRTL--LDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAVLP 82 (258)
T ss_pred EEeEEEEeCCeee--eeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEEEc
Confidence 6789999976544 9999999999999999999999999999999999988632 1233444
Q ss_pred CCcccccCCCC---------cc----c----cc-------cc----chhccCCCcchhHHHHHHHHHh------hCCcEE
Q 019702 159 TSNEIGGDGDI---------PH----S----AI-------GT----ARRMQVPEPSLQHKVMIEAVEN------HMPEVI 204 (337)
Q Consensus 159 ~~~ei~~~~~~---------~~----~----~~-------~~----~~~~~~~S~g~k~r~~ia~al~------~~P~vl 204 (337)
+...+.....+ .. . .+ +. ......+|+||+||++||+|++ .+|++|
T Consensus 83 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~p~ll 162 (258)
T PRK13548 83 QHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWL 162 (258)
T ss_pred cCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEE
Confidence 33222110000 00 0 00 00 0223457999999999999999 599999
Q ss_pred EEcCCCCHHHH-------HHHHHHH-hcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHH
Q 019702 205 IVDEIGTEAEA-------HACRSIA-ERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (337)
Q Consensus 205 ilDEp~~~ld~-------~~l~~~~-~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~ 266 (337)
++||||+++|. +.+.++. ++|.|||++||+.+++..+||+++ ++++|+++..|+++++..
T Consensus 163 lLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~--~l~~G~i~~~~~~~~~~~ 230 (258)
T PRK13548 163 LLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIV--LLHQGRLVADGTPAEVLT 230 (258)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEE--EEECCEEEeeCCHHHHhC
Confidence 99999999995 3455665 568999999999999989999999 999999999999988765
No 80
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.96 E-value=6.5e-29 Score=229.47 Aligned_cols=166 Identities=17% Similarity=0.199 Sum_probs=128.1
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeE----------------------
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRV---------------------- 154 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i---------------------- 154 (337)
+++++++|+.... ++++++.+++|++++|+||||||||||+++|+|+++|+. +.+
T Consensus 8 ~~~l~~~~~~~~~--l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~-G~i~~~g~~~~~~~~~~~~~~~~~~ 84 (257)
T PRK10619 8 VIDLHKRYGEHEV--LKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSE-GSIVVNGQTINLVRDKDGQLKVADK 84 (257)
T ss_pred EeeeEEEECCEEE--EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC-eEEEECCEEcccccccccccccccc
Confidence 6789999976544 999999999999999999999999999999999998873 322
Q ss_pred ----------EEEcCCcccccCCCCcccc------------------c-------cc-----chhccCCCcchhHHHHHH
Q 019702 155 ----------VIVDTSNEIGGDGDIPHSA------------------I-------GT-----ARRMQVPEPSLQHKVMIE 194 (337)
Q Consensus 155 ----------~~v~~~~ei~~~~~~~~~~------------------~-------~~-----~~~~~~~S~g~k~r~~ia 194 (337)
.++++...+.....+.++. . +. ......+|+||+||++||
T Consensus 85 ~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qrv~la 164 (257)
T PRK10619 85 NQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIA 164 (257)
T ss_pred hHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHH
Confidence 3333222111000000000 0 00 022345799999999999
Q ss_pred HHHhhCCcEEEEcCCCCHHHH-------HHHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHh
Q 019702 195 AVENHMPEVIIVDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (337)
Q Consensus 195 ~al~~~P~vlilDEp~~~ld~-------~~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~ 267 (337)
+|++.+|++||+||||+++|. +.+.+++++|.|+|++||+.+++..+||+++ ++++|+++..|++++++..
T Consensus 165 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~--~l~~G~i~~~~~~~~~~~~ 242 (257)
T PRK10619 165 RALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVI--FLHQGKIEEEGAPEQLFGN 242 (257)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEE--EEECCEEEEeCCHHHhhhC
Confidence 999999999999999999995 3455566679999999999999999999999 9999999999999887653
No 81
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.96 E-value=5.8e-29 Score=229.95 Aligned_cols=162 Identities=16% Similarity=0.162 Sum_probs=123.9
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCC-------------eEEEEcCCccc
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK-------------RVVIVDTSNEI 163 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~-------------~i~~v~~~~ei 163 (337)
+++++++|+.... ++++++.+.+|++++|+||||||||||+++|+|+++|+.+. .+.++.+...+
T Consensus 15 i~~l~~~~~~~~i--l~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~l 92 (257)
T PRK11247 15 LNAVSKRYGERTV--LNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMFQDARL 92 (257)
T ss_pred EEEEEEEECCcce--eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEecCccC
Confidence 6799999976544 99999999999999999999999999999999999887321 23444443322
Q ss_pred ccCCCCc--------c---ccc-------cc----chhccCCCcchhHHHHHHHHHhhCCcEEEEcCCCCHHHHH-----
Q 019702 164 GGDGDIP--------H---SAI-------GT----ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAH----- 216 (337)
Q Consensus 164 ~~~~~~~--------~---~~~-------~~----~~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~~ld~~----- 216 (337)
.....+. . ... +. .+....+|+||+||++||+|++.+|++||+||||+++|..
T Consensus 93 ~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l 172 (257)
T PRK11247 93 LPWKKVIDNVGLGLKGQWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEM 172 (257)
T ss_pred CCCCcHHHHHHhcccchHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHH
Confidence 1100000 0 000 00 1223457999999999999999999999999999999953
Q ss_pred --HHHHHHh-cCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHH
Q 019702 217 --ACRSIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEE 262 (337)
Q Consensus 217 --~l~~~~~-~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~ 262 (337)
.+.++.+ .|.|||++||+.+++..+||+++ ++++|+++..++.+
T Consensus 173 ~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~--~l~~G~i~~~~~~~ 219 (257)
T PRK11247 173 QDLIESLWQQHGFTVLLVTHDVSEAVAMADRVL--LIEEGKIGLDLTVD 219 (257)
T ss_pred HHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEE--EEECCEEEeecccc
Confidence 3455543 58999999999999989999999 99999999887654
No 82
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.96 E-value=6.9e-29 Score=227.12 Aligned_cols=164 Identities=16% Similarity=0.185 Sum_probs=125.3
Q ss_pred EeeEEEEEC-CccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCe----------------------
Q 019702 97 IVGLTCRVG-RAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKR---------------------- 153 (337)
Q Consensus 97 i~~l~~r~~-~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~---------------------- 153 (337)
+++++++|+ ... .++++++.+.+|++++|+||||||||||+++|+|+++|+. +.
T Consensus 4 ~~~l~~~~~~~~~--il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~-G~i~~~g~~~~~~~~~~~~~~~~~ 80 (243)
T TIGR02315 4 VENLSKVYPNGKQ--ALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSS-GSILLEGTDITKLRGKKLRKLRRR 80 (243)
T ss_pred EEeeeeecCCCcc--eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCc-cEEEECCEEhhhCCHHHHHHHHhh
Confidence 568999997 433 4999999999999999999999999999999999998763 33
Q ss_pred EEEEcCCcccccCCCCc----------------------cc---cc-------cc----chhccCCCcchhHHHHHHHHH
Q 019702 154 VVIVDTSNEIGGDGDIP----------------------HS---AI-------GT----ARRMQVPEPSLQHKVMIEAVE 197 (337)
Q Consensus 154 i~~v~~~~ei~~~~~~~----------------------~~---~~-------~~----~~~~~~~S~g~k~r~~ia~al 197 (337)
+.++.+...+.....+. .. .+ +. .+....+|+||+||++||+|+
T Consensus 81 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al 160 (243)
T TIGR02315 81 IGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARAL 160 (243)
T ss_pred eEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHH
Confidence 33333322111100000 00 00 00 022345799999999999999
Q ss_pred hhCCcEEEEcCCCCHHHH-------HHHHHHHh-cCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHH
Q 019702 198 NHMPEVIIVDEIGTEAEA-------HACRSIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARA 265 (337)
Q Consensus 198 ~~~P~vlilDEp~~~ld~-------~~l~~~~~-~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~ 265 (337)
+.+|++|++||||+++|. +.+.++.+ .|.|+|++||+.+++..+||+++ ++++|+++..|+++++.
T Consensus 161 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~--~l~~G~i~~~~~~~~~~ 234 (243)
T TIGR02315 161 AQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIV--GLKAGEIVFDGAPSELD 234 (243)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEE--EEECCEEEecCCHHHhC
Confidence 999999999999999995 34555554 48999999999999989999999 99999999999998763
No 83
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=8.8e-29 Score=232.18 Aligned_cols=169 Identities=15% Similarity=0.176 Sum_probs=129.3
Q ss_pred EeeEEEEECCcc---ccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCC---------------------
Q 019702 97 IVGLTCRVGRAV---SGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK--------------------- 152 (337)
Q Consensus 97 i~~l~~r~~~~~---~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~--------------------- 152 (337)
+++++++|.... ...++++++.+.+|++++|+||||||||||+++|+|++.|+.+.
T Consensus 5 ~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 84 (286)
T PRK13646 5 FDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRPVR 84 (286)
T ss_pred EEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHH
Confidence 679999996422 23599999999999999999999999999999999999887321
Q ss_pred -eEEEEcCCcc--ccc---------C---CCCcccc-----------ccc-----chhccCCCcchhHHHHHHHHHhhCC
Q 019702 153 -RVVIVDTSNE--IGG---------D---GDIPHSA-----------IGT-----ARRMQVPEPSLQHKVMIEAVENHMP 201 (337)
Q Consensus 153 -~i~~v~~~~e--i~~---------~---~~~~~~~-----------~~~-----~~~~~~~S~g~k~r~~ia~al~~~P 201 (337)
+++++.+... +.. . ....... ++. ......+|+||+||++||+|++.+|
T Consensus 85 ~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL~~~p 164 (286)
T PRK13646 85 KRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNP 164 (286)
T ss_pred hheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHhCC
Confidence 2344444321 100 0 0000000 000 0223457999999999999999999
Q ss_pred cEEEEcCCCCHHHH-------HHHHHHHh-cCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHh
Q 019702 202 EVIIVDEIGTEAEA-------HACRSIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (337)
Q Consensus 202 ~vlilDEp~~~ld~-------~~l~~~~~-~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~ 267 (337)
++||+||||+++|. +.+.++.+ .|.|||++||+++++..+||+++ +|++|++++.|++++++..
T Consensus 165 ~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~--~l~~G~i~~~g~~~~~~~~ 236 (286)
T PRK13646 165 DIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVI--VMKEGSIVSQTSPKELFKD 236 (286)
T ss_pred CEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEE--EEECCEEEEECCHHHHHhC
Confidence 99999999999995 34555554 48999999999999989999999 9999999999999998764
No 84
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.96 E-value=7.3e-29 Score=237.05 Aligned_cols=170 Identities=18% Similarity=0.182 Sum_probs=129.7
Q ss_pred EeeEEEEECCc-----------cccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCC--------------
Q 019702 97 IVGLTCRVGRA-----------VSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ-------------- 151 (337)
Q Consensus 97 i~~l~~r~~~~-----------~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~-------------- 151 (337)
++||+++|... ...+++++++.+++|++++|+|+||||||||+++|+|++.|+.+
T Consensus 11 v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~~~~ 90 (331)
T PRK15079 11 VADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKD 90 (331)
T ss_pred EeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCcCCH
Confidence 66888888531 12358999999999999999999999999999999999988622
Q ss_pred -------CeEEEEcCCcc--cccCCC---------------Ccccc-----------ccc-----chhccCCCcchhHHH
Q 019702 152 -------KRVVIVDTSNE--IGGDGD---------------IPHSA-----------IGT-----ARRMQVPEPSLQHKV 191 (337)
Q Consensus 152 -------~~i~~v~~~~e--i~~~~~---------------~~~~~-----------~~~-----~~~~~~~S~g~k~r~ 191 (337)
+++.++.+... +..... +.... ++. .+....+|+||+||+
T Consensus 91 ~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG~~QRv 170 (331)
T PRK15079 91 DEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRI 170 (331)
T ss_pred HHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHH
Confidence 13444444321 110000 00000 000 022335799999999
Q ss_pred HHHHHHhhCCcEEEEcCCCCHHHH-------HHHHHHHhc-CCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHH
Q 019702 192 MIEAVENHMPEVIIVDEIGTEAEA-------HACRSIAER-GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEA 263 (337)
Q Consensus 192 ~ia~al~~~P~vlilDEp~~~ld~-------~~l~~~~~~-G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~ 263 (337)
+||+|++.+|++||+||||+++|. +.+.++.++ |.|+|++|||++.+..+||+++ +|++|++++.|++++
T Consensus 171 ~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~--vl~~G~ive~g~~~~ 248 (331)
T PRK15079 171 GIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVL--VMYLGHAVELGTYDE 248 (331)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEE--EEECCEEEEEcCHHH
Confidence 999999999999999999999994 445666654 9999999999999999999999 999999999999999
Q ss_pred HHHhh
Q 019702 264 RARRC 268 (337)
Q Consensus 264 ~~~~~ 268 (337)
++..+
T Consensus 249 i~~~~ 253 (331)
T PRK15079 249 VYHNP 253 (331)
T ss_pred HHcCC
Confidence 98753
No 85
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=2.2e-28 Score=228.74 Aligned_cols=168 Identities=13% Similarity=0.143 Sum_probs=128.0
Q ss_pred EeeEEEEECCcc---ccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCe--------------------
Q 019702 97 IVGLTCRVGRAV---SGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKR-------------------- 153 (337)
Q Consensus 97 i~~l~~r~~~~~---~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~-------------------- 153 (337)
+++++++|+... ...++++++.+++|++++|+||||||||||+++|+|+++|+. +.
T Consensus 5 ~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~-G~i~~~g~~i~~~~~~~~~~~~ 83 (280)
T PRK13649 5 LQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQ-GSVRVDDTLITSTSKNKDIKQI 83 (280)
T ss_pred EEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCc-eEEEECCEEccccccccCHHHH
Confidence 678999997421 235999999999999999999999999999999999998763 22
Q ss_pred ---EEEEcCCcc--cccC------------CCCcccc-----------ccc-----chhccCCCcchhHHHHHHHHHhhC
Q 019702 154 ---VVIVDTSNE--IGGD------------GDIPHSA-----------IGT-----ARRMQVPEPSLQHKVMIEAVENHM 200 (337)
Q Consensus 154 ---i~~v~~~~e--i~~~------------~~~~~~~-----------~~~-----~~~~~~~S~g~k~r~~ia~al~~~ 200 (337)
+.++.+... +... ....... ++. .+....+|+||+||++||+|++.+
T Consensus 84 ~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~ 163 (280)
T PRK13649 84 RKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILAME 163 (280)
T ss_pred HhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHcC
Confidence 334443321 1000 0000000 000 012345799999999999999999
Q ss_pred CcEEEEcCCCCHHHHH-------HHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHh
Q 019702 201 PEVIIVDEIGTEAEAH-------ACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (337)
Q Consensus 201 P~vlilDEp~~~ld~~-------~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~ 267 (337)
|++||+||||+++|.. .+.+++++|.|||++||+.+++..+||+++ ++++|+++..|++++++..
T Consensus 164 p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~--~l~~G~i~~~g~~~~~~~~ 235 (280)
T PRK13649 164 PKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVY--VLEKGKLVLSGKPKDIFQD 235 (280)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEE--EEECCEEEEeCCHHHHhcC
Confidence 9999999999999953 345555568999999999999999999999 9999999999999988763
No 86
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=6.7e-29 Score=222.47 Aligned_cols=159 Identities=23% Similarity=0.285 Sum_probs=120.6
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCC--------------CeEEEEcCCcc
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ--------------KRVVIVDTSNE 162 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~--------------~~i~~v~~~~e 162 (337)
+++++++|+... .++++++.+.+|++++|+||||||||||+++|+|+++|+.+ ..+.++.+...
T Consensus 3 ~~~l~~~~~~~~--~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~ 80 (210)
T cd03269 3 VENVTKRFGRVT--ALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPEERG 80 (210)
T ss_pred EEEEEEEECCEE--EEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccEEEeccCCc
Confidence 568999997544 48999999999999999999999999999999999988632 12344444322
Q ss_pred cccCCC-------------Cccc----ccc-c----------chhccCCCcchhHHHHHHHHHhhCCcEEEEcCCCCHHH
Q 019702 163 IGGDGD-------------IPHS----AIG-T----------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAE 214 (337)
Q Consensus 163 i~~~~~-------------~~~~----~~~-~----------~~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~~ld 214 (337)
+..... .+.. .+. . ......+|+||+||+++|+|++.+|++|++||||+++|
T Consensus 81 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~lllDEP~~~LD 160 (210)
T cd03269 81 LYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLD 160 (210)
T ss_pred CCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCC
Confidence 111000 0000 000 0 01234479999999999999999999999999999999
Q ss_pred H-------HHHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEec
Q 019702 215 A-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLG 259 (337)
Q Consensus 215 ~-------~~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g 259 (337)
. +.+.++.++|.|||++||+.+++..+||+++ ++++|+++..|
T Consensus 161 ~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~--~l~~g~i~~~~ 210 (210)
T cd03269 161 PVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVL--LLNKGRAVLYG 210 (210)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEE--EEeCCEEEecC
Confidence 5 3455555668999999999999989999999 89999987653
No 87
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.96 E-value=9.2e-29 Score=223.65 Aligned_cols=163 Identities=16% Similarity=0.179 Sum_probs=124.8
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCC--------------eEEEEcCCcc
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK--------------RVVIVDTSNE 162 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~--------------~i~~v~~~~e 162 (337)
+++++++|+... .++++++.+.+|++++|+||||||||||+++|+|+++|+.+. .+.++++...
T Consensus 3 l~~v~~~~~~~~--~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~~~~~~~~~q~~~ 80 (223)
T TIGR03740 3 TKNLSKRFGKQT--AVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIGSLIESPP 80 (223)
T ss_pred EEeEEEEECCEE--EEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccccccEEEEcCCCC
Confidence 578999997654 499999999999999999999999999999999999887331 2333333222
Q ss_pred cccCCCCccc-------------cc-------cc----chhccCCCcchhHHHHHHHHHhhCCcEEEEcCCCCHHHH---
Q 019702 163 IGGDGDIPHS-------------AI-------GT----ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEA--- 215 (337)
Q Consensus 163 i~~~~~~~~~-------------~~-------~~----~~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~~ld~--- 215 (337)
+.....+..+ .+ +. ......+|+||+||+++|+|++.+|++|++|||++++|.
T Consensus 81 ~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~~~LD~~~~ 160 (223)
T TIGR03740 81 LYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGI 160 (223)
T ss_pred ccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHHH
Confidence 1110000000 00 00 022334799999999999999999999999999999995
Q ss_pred ----HHHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHH
Q 019702 216 ----HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEA 263 (337)
Q Consensus 216 ----~~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~ 263 (337)
+.+.++.++|.++|++||+.+++..+||+++ ++.+|+++..|++.+
T Consensus 161 ~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~--~l~~g~i~~~~~~~~ 210 (223)
T TIGR03740 161 QELRELIRSFPEQGITVILSSHILSEVQQLADHIG--IISEGVLGYQGKINK 210 (223)
T ss_pred HHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEE--EEeCCEEEEecChhh
Confidence 3455555668999999999999989999999 999999999988764
No 88
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.96 E-value=5.8e-29 Score=225.48 Aligned_cols=162 Identities=15% Similarity=0.185 Sum_probs=124.2
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccc-----cccCC--------------------
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVL-----SDEFQ-------------------- 151 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll-----~~~~~-------------------- 151 (337)
+++++++|+... .++++++.+.+|++++|+||||||||||+++|+|++ +|..+
T Consensus 3 ~~~l~~~~~~~~--~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (227)
T cd03260 3 LRDLNVYYGDKH--ALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELR 80 (227)
T ss_pred EEEEEEEcCCce--eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHHH
Confidence 678999997654 499999999999999999999999999999999999 66522
Q ss_pred CeEEEEcCCcccccC------------CCC-cc----ccc-------cc----chh--ccCCCcchhHHHHHHHHHhhCC
Q 019702 152 KRVVIVDTSNEIGGD------------GDI-PH----SAI-------GT----ARR--MQVPEPSLQHKVMIEAVENHMP 201 (337)
Q Consensus 152 ~~i~~v~~~~ei~~~------------~~~-~~----~~~-------~~----~~~--~~~~S~g~k~r~~ia~al~~~P 201 (337)
.++.++++...+... ... .. ..+ +. ... ...+|+||+||++||+|++.+|
T Consensus 81 ~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p 160 (227)
T cd03260 81 RRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEP 160 (227)
T ss_pred hhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHhcCC
Confidence 123444443222100 000 00 000 00 022 2678999999999999999999
Q ss_pred cEEEEcCCCCHHHH-------HHHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHH
Q 019702 202 EVIIVDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEA 263 (337)
Q Consensus 202 ~vlilDEp~~~ld~-------~~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~ 263 (337)
++|++||||+++|. +.+.+++++ .|||++||+.+++..+||+++ ++++|+++..|++++
T Consensus 161 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~~~~~~~d~i~--~l~~G~i~~~g~~~~ 226 (227)
T cd03260 161 EVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNMQQAARVADRTA--FLLNGRLVEFGPTEQ 226 (227)
T ss_pred CEEEEeCCCccCCHHHHHHHHHHHHHHhhC-cEEEEEeccHHHHHHhCCEEE--EEeCCEEEEecCccc
Confidence 99999999999995 345555555 899999999999989999999 999999999988764
No 89
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.96 E-value=1.2e-28 Score=227.00 Aligned_cols=166 Identities=16% Similarity=0.197 Sum_probs=126.9
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeE----------------------
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRV---------------------- 154 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i---------------------- 154 (337)
+++++++|+... .++++++.+++|++++|+||||||||||+++|+|+++|+. +.|
T Consensus 3 ~~~l~~~~~~~~--~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~-G~i~~~g~~i~~~~~~~~~~~~~~~ 79 (252)
T TIGR03005 3 FSDVTKRFGILT--VLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDE-GQIQVEGEQLYHMPGRNGPLVPADE 79 (252)
T ss_pred EEEEEEEeCCee--EEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc-eEEEECCEEccccccccccccccch
Confidence 678999997644 4999999999999999999999999999999999998863 333
Q ss_pred ----------EEEcCCcccccCCCC--------------cccc----cc-cc----------hhccCCCcchhHHHHHHH
Q 019702 155 ----------VIVDTSNEIGGDGDI--------------PHSA----IG-TA----------RRMQVPEPSLQHKVMIEA 195 (337)
Q Consensus 155 ----------~~v~~~~ei~~~~~~--------------~~~~----~~-~~----------~~~~~~S~g~k~r~~ia~ 195 (337)
.++.+...+.....+ .... +. .. +....+|+||+||++||+
T Consensus 80 ~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~lar 159 (252)
T TIGR03005 80 KHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIAR 159 (252)
T ss_pred hHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHHHHHHHH
Confidence 222222111100000 0000 00 00 123347999999999999
Q ss_pred HHhhCCcEEEEcCCCCHHHHH-------HHHHHHhc-CCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHh
Q 019702 196 VENHMPEVIIVDEIGTEAEAH-------ACRSIAER-GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (337)
Q Consensus 196 al~~~P~vlilDEp~~~ld~~-------~l~~~~~~-G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~ 267 (337)
|++.+|++||+|||++++|.. .+.++.++ |.|+|++||+.+.+..+||+++ ++++|++++.|+++++...
T Consensus 160 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~--~l~~G~i~~~g~~~~~~~~ 237 (252)
T TIGR03005 160 ALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVC--FFDKGRIVEQGKPDEIFRQ 237 (252)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEE--EEECCEEEEeCCHHHHhcC
Confidence 999999999999999999953 45555554 8999999999999988999999 9999999999999988754
No 90
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.96 E-value=5.3e-29 Score=224.24 Aligned_cols=155 Identities=16% Similarity=0.158 Sum_probs=114.8
Q ss_pred EeeEEEEECCcc--ccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCe---------------------
Q 019702 97 IVGLTCRVGRAV--SGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKR--------------------- 153 (337)
Q Consensus 97 i~~l~~r~~~~~--~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~--------------------- 153 (337)
+++++++|+... ...++++++.+++|++++|+||||||||||+++|+|+++|+. +.
T Consensus 3 ~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~-G~i~~~g~~~~~~~~~~~~~~~~ 81 (218)
T cd03255 3 LKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTS-GEVRVDGTDISKLSEKELAAFRR 81 (218)
T ss_pred EeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCc-eeEEECCEehhhcchhHHHHHHh
Confidence 678999997521 224999999999999999999999999999999999998863 33
Q ss_pred --EEEEcCCcccccCCCCccc-----------------ccc-c----------chhccCCCcchhHHHHHHHHHhhCCcE
Q 019702 154 --VVIVDTSNEIGGDGDIPHS-----------------AIG-T----------ARRMQVPEPSLQHKVMIEAVENHMPEV 203 (337)
Q Consensus 154 --i~~v~~~~ei~~~~~~~~~-----------------~~~-~----------~~~~~~~S~g~k~r~~ia~al~~~P~v 203 (337)
+.++.+...+.....+.++ .+. . .+....+|+||+||++||+|++.+|++
T Consensus 82 ~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 161 (218)
T cd03255 82 RHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKI 161 (218)
T ss_pred hcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHccCCCE
Confidence 3333332211100000000 000 0 022345799999999999999999999
Q ss_pred EEEcCCCCHHHH-------HHHHHHHh-cCCeEEEEEcCcchhHHhhchHHHHHhcCceE
Q 019702 204 IIVDEIGTEAEA-------HACRSIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDT 255 (337)
Q Consensus 204 lilDEp~~~ld~-------~~l~~~~~-~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~i 255 (337)
||+||||+++|. +.+.++++ .|.|||++||+.+++. +||+++ ++++|++
T Consensus 162 llLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~-~~d~v~--~l~~G~i 218 (218)
T cd03255 162 ILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAE-YADRII--ELRDGKI 218 (218)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHh-hhcEEE--EeeCCcC
Confidence 999999999995 34555555 5899999999999887 999999 8888763
No 91
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=1e-28 Score=235.75 Aligned_cols=169 Identities=16% Similarity=0.170 Sum_probs=129.9
Q ss_pred EeeEEEEECCcc--ccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccc----cCCC------------------
Q 019702 97 IVGLTCRVGRAV--SGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSD----EFQK------------------ 152 (337)
Q Consensus 97 i~~l~~r~~~~~--~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~----~~~~------------------ 152 (337)
++++++.|+... ..+++++++.+++|++++|+|+||||||||+++|+|++.+ + .+
T Consensus 6 v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~-~G~i~~~G~~i~~~~~~~~~ 84 (326)
T PRK11022 6 VDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVM-AEKLEFNGQDLQRISEKERR 84 (326)
T ss_pred EeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCc-ceEEEECCEECCcCCHHHHH
Confidence 678999996532 2359999999999999999999999999999999999974 2 12
Q ss_pred -----eEEEEcCCcccccC--C--------------CCcccc-----------ccc-------chhccCCCcchhHHHHH
Q 019702 153 -----RVVIVDTSNEIGGD--G--------------DIPHSA-----------IGT-------ARRMQVPEPSLQHKVMI 193 (337)
Q Consensus 153 -----~i~~v~~~~ei~~~--~--------------~~~~~~-----------~~~-------~~~~~~~S~g~k~r~~i 193 (337)
.+.++.+....... . ...... ++. .+....+|+||+||++|
T Consensus 85 ~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv~i 164 (326)
T PRK11022 85 NLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVMI 164 (326)
T ss_pred HHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHH
Confidence 24555443211000 0 000000 000 01234579999999999
Q ss_pred HHHHhhCCcEEEEcCCCCHHHH-------HHHHHHHh-cCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHH
Q 019702 194 EAVENHMPEVIIVDEIGTEAEA-------HACRSIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARA 265 (337)
Q Consensus 194 a~al~~~P~vlilDEp~~~ld~-------~~l~~~~~-~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~ 265 (337)
|+|++.+|++||+||||+++|. +.+.++.+ .|.|+|++||+++.+..+||+++ +|++|++++.|++++++
T Consensus 165 ArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~--vm~~G~ive~g~~~~~~ 242 (326)
T PRK11022 165 AMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKII--VMYAGQVVETGKAHDIF 242 (326)
T ss_pred HHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE--EEECCEEEEECCHHHHh
Confidence 9999999999999999999994 44666665 59999999999999999999999 99999999999999998
Q ss_pred Hhh
Q 019702 266 RRC 268 (337)
Q Consensus 266 ~~~ 268 (337)
.++
T Consensus 243 ~~p 245 (326)
T PRK11022 243 RAP 245 (326)
T ss_pred hCC
Confidence 753
No 92
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=9.4e-29 Score=231.22 Aligned_cols=167 Identities=19% Similarity=0.259 Sum_probs=127.4
Q ss_pred EeeEEEEECCc-cccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCe-------------------EEE
Q 019702 97 IVGLTCRVGRA-VSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKR-------------------VVI 156 (337)
Q Consensus 97 i~~l~~r~~~~-~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~-------------------i~~ 156 (337)
+++++++|++. ....++++++.+++|++++|+||||||||||+++|+|+++|+. +. +.+
T Consensus 7 ~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~-G~i~~~g~~i~~~~~~~~~~~i~~ 85 (279)
T PRK13650 7 VKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAES-GQIIIDGDLLTEENVWDIRHKIGM 85 (279)
T ss_pred EEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCC-cEEEECCEECCcCcHHHHHhhceE
Confidence 67999999642 2235999999999999999999999999999999999998873 33 334
Q ss_pred EcCCcc--cccC-------C-----CCcccc----c-------cc----chhccCCCcchhHHHHHHHHHhhCCcEEEEc
Q 019702 157 VDTSNE--IGGD-------G-----DIPHSA----I-------GT----ARRMQVPEPSLQHKVMIEAVENHMPEVIIVD 207 (337)
Q Consensus 157 v~~~~e--i~~~-------~-----~~~~~~----~-------~~----~~~~~~~S~g~k~r~~ia~al~~~P~vlilD 207 (337)
+.+... +... . ...... + +. .+....+|+||+||++||+|++.+|++||+|
T Consensus 86 v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLD 165 (279)
T PRK13650 86 VFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILD 165 (279)
T ss_pred EEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 433321 1000 0 000000 0 00 0223457999999999999999999999999
Q ss_pred CCCCHHHH-------HHHHHHHhc-CCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHh
Q 019702 208 EIGTEAEA-------HACRSIAER-GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (337)
Q Consensus 208 Ep~~~ld~-------~~l~~~~~~-G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~ 267 (337)
|||+++|. +.+.+++++ |.|||++||+++.+ ..||+++ ++++|+++..|++++++..
T Consensus 166 EPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~-~~~dri~--~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13650 166 EATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEV-ALSDRVL--VMKNGQVESTSTPRELFSR 230 (279)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHH-HhCCEEE--EEECCEEEEECCHHHHHcC
Confidence 99999995 345566654 99999999999988 4799999 9999999999999998764
No 93
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=1.1e-28 Score=235.46 Aligned_cols=170 Identities=16% Similarity=0.195 Sum_probs=129.6
Q ss_pred EeeEEEEECCc--------cccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCC-----------------
Q 019702 97 IVGLTCRVGRA--------VSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ----------------- 151 (337)
Q Consensus 97 i~~l~~r~~~~--------~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~----------------- 151 (337)
++|+++.|... ...+++++++.+.+|++++|+|+||||||||+++|+|+++|+.+
T Consensus 8 v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~~~~ 87 (327)
T PRK11308 8 AIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQ 87 (327)
T ss_pred EeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCHHHH
Confidence 66888888531 12469999999999999999999999999999999999987621
Q ss_pred ----CeEEEEcCCcc--cccC--------------CCCcccc-----------ccc-----chhccCCCcchhHHHHHHH
Q 019702 152 ----KRVVIVDTSNE--IGGD--------------GDIPHSA-----------IGT-----ARRMQVPEPSLQHKVMIEA 195 (337)
Q Consensus 152 ----~~i~~v~~~~e--i~~~--------------~~~~~~~-----------~~~-----~~~~~~~S~g~k~r~~ia~ 195 (337)
+++.++.+... +... ....... ++. .+....+|+||+||++||+
T Consensus 88 ~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QRv~iAr 167 (327)
T PRK11308 88 KLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIAR 167 (327)
T ss_pred HHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHHHHHHH
Confidence 12444444321 0000 0000000 000 1223457999999999999
Q ss_pred HHhhCCcEEEEcCCCCHHHH-------HHHHHHHh-cCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHh
Q 019702 196 VENHMPEVIIVDEIGTEAEA-------HACRSIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (337)
Q Consensus 196 al~~~P~vlilDEp~~~ld~-------~~l~~~~~-~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~ 267 (337)
||+.+|++||+||||+++|. +.+.++.+ .|.|+|++|||++.+..+||+++ +|+.|++++.|++++++..
T Consensus 168 AL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~--vm~~G~ive~g~~~~~~~~ 245 (327)
T PRK11308 168 ALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVM--VMYLGRCVEKGTKEQIFNN 245 (327)
T ss_pred HHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEE--EEECCEEEEECCHHHHhcC
Confidence 99999999999999999994 34556655 49999999999999999999999 9999999999999999875
Q ss_pred h
Q 019702 268 C 268 (337)
Q Consensus 268 ~ 268 (337)
+
T Consensus 246 p 246 (327)
T PRK11308 246 P 246 (327)
T ss_pred C
Confidence 3
No 94
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=1.3e-28 Score=230.70 Aligned_cols=168 Identities=13% Similarity=0.192 Sum_probs=128.7
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCC--------------------CeEEE
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ--------------------KRVVI 156 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~--------------------~~i~~ 156 (337)
+++++++|+... ..++++++.+.+|++++|+||||||||||+++|+|+++|+.+ ..+.+
T Consensus 8 ~~~l~~~~~~~~-~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ig~ 86 (283)
T PRK13636 8 VEELNYNYSDGT-HALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRESVGM 86 (283)
T ss_pred EEeEEEEeCCCC-eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhhEEE
Confidence 679999996322 249999999999999999999999999999999999987732 12344
Q ss_pred EcCCcccc-cC-------------CCCcccc----ccc-----------chhccCCCcchhHHHHHHHHHhhCCcEEEEc
Q 019702 157 VDTSNEIG-GD-------------GDIPHSA----IGT-----------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVD 207 (337)
Q Consensus 157 v~~~~ei~-~~-------------~~~~~~~----~~~-----------~~~~~~~S~g~k~r~~ia~al~~~P~vlilD 207 (337)
+++..... +. ..++... +.. .+....+|+||+||++||+||+.+|++||+|
T Consensus 87 v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~~p~lLilD 166 (283)
T PRK13636 87 VFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLD 166 (283)
T ss_pred EecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 44432100 00 0000000 000 0233457999999999999999999999999
Q ss_pred CCCCHHHH-------HHHHHHHhc-CCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHh
Q 019702 208 EIGTEAEA-------HACRSIAER-GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (337)
Q Consensus 208 Ep~~~ld~-------~~l~~~~~~-G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~ 267 (337)
|||+++|. +.+.++.++ |.|||++||+++++..+||+++ ++++|++++.|++++++..
T Consensus 167 EPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~--~l~~G~i~~~g~~~~~~~~ 232 (283)
T PRK13636 167 EPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVF--VMKEGRVILQGNPKEVFAE 232 (283)
T ss_pred CCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEE--EEECCEEEEeCCHHHHhcC
Confidence 99999995 345555554 8999999999999988999999 9999999999999998764
No 95
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=1.3e-28 Score=225.33 Aligned_cols=165 Identities=17% Similarity=0.205 Sum_probs=126.3
Q ss_pred EeeEEEEECC-ccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCe-------------------EEE
Q 019702 97 IVGLTCRVGR-AVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKR-------------------VVI 156 (337)
Q Consensus 97 i~~l~~r~~~-~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~-------------------i~~ 156 (337)
+++++++|+. .. .++++++.+++|++++|+||||||||||+++|+|+++|+. +. +.+
T Consensus 3 ~~~l~~~~~~~~~--~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~-G~i~~~g~~~~~~~~~~~~~~i~~ 79 (242)
T cd03295 3 FENVTKRYGGGKK--AVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTS-GEIFIDGEDIREQDPVELRRKIGY 79 (242)
T ss_pred EEEEEEEeCCcce--EeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCC-ceEEECCeEcCcCChHHhhcceEE
Confidence 5689999976 33 4999999999999999999999999999999999998863 32 333
Q ss_pred EcCCcccccCCC-------------Cccc----c-------ccc------chhccCCCcchhHHHHHHHHHhhCCcEEEE
Q 019702 157 VDTSNEIGGDGD-------------IPHS----A-------IGT------ARRMQVPEPSLQHKVMIEAVENHMPEVIIV 206 (337)
Q Consensus 157 v~~~~ei~~~~~-------------~~~~----~-------~~~------~~~~~~~S~g~k~r~~ia~al~~~P~vlil 206 (337)
+++...+..... .... . ++. .+....+|+||+||++||+|++.+|++|++
T Consensus 80 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llll 159 (242)
T cd03295 80 VIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLM 159 (242)
T ss_pred EccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEEEe
Confidence 333221111000 0000 0 000 012234799999999999999999999999
Q ss_pred cCCCCHHHHH-------HHHHHHhc-CCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHH
Q 019702 207 DEIGTEAEAH-------ACRSIAER-GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (337)
Q Consensus 207 DEp~~~ld~~-------~l~~~~~~-G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~ 266 (337)
||||+++|.. .+.+++++ |.|||++||+.+.+..+||+++ ++++|+++..|+++++..
T Consensus 160 DEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~--~l~~G~i~~~~~~~~~~~ 225 (242)
T cd03295 160 DEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIA--IMKNGEIVQVGTPDEILR 225 (242)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEE--EEECCEEEEecCHHHHHc
Confidence 9999999953 35555544 8999999999999889999999 999999999999887754
No 96
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=1.5e-28 Score=226.70 Aligned_cols=166 Identities=16% Similarity=0.218 Sum_probs=128.0
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCC------------------eEEEEc
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK------------------RVVIVD 158 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~------------------~i~~v~ 158 (337)
+++++++|+... .++++++.+++|++++|+||||||||||+++|+|+++|+.+. .+.+++
T Consensus 5 ~~~l~~~~~~~~--il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~ 82 (255)
T PRK11231 5 TENLTVGYGTKR--ILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLALLP 82 (255)
T ss_pred EEeEEEEECCEE--EEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEEec
Confidence 678999997654 499999999999999999999999999999999999876321 244444
Q ss_pred CCcccccC--------CC-------C---ccc---cccc-----------chhccCCCcchhHHHHHHHHHhhCCcEEEE
Q 019702 159 TSNEIGGD--------GD-------I---PHS---AIGT-----------ARRMQVPEPSLQHKVMIEAVENHMPEVIIV 206 (337)
Q Consensus 159 ~~~ei~~~--------~~-------~---~~~---~~~~-----------~~~~~~~S~g~k~r~~ia~al~~~P~vlil 206 (337)
+...+... .. . ... .+.. ......+|+||+||++||+|++.+|++||+
T Consensus 83 q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llll 162 (255)
T PRK11231 83 QHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLL 162 (255)
T ss_pred ccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 33221100 00 0 000 0000 022345799999999999999999999999
Q ss_pred cCCCCHHHH-------HHHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHH
Q 019702 207 DEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (337)
Q Consensus 207 DEp~~~ld~-------~~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~ 266 (337)
||||+++|. +.+.++.++|.|+|++||+.+.+..+||+++ ++++|+++..|+++++..
T Consensus 163 DEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~--~l~~G~i~~~~~~~~~~~ 227 (255)
T PRK11231 163 DEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLV--VLANGHVMAQGTPEEVMT 227 (255)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEE--EEECCeEEEEcCHHHhcC
Confidence 999999995 3455555568999999999999999999999 999999999999888764
No 97
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=1.5e-28 Score=224.91 Aligned_cols=164 Identities=16% Similarity=0.192 Sum_probs=125.9
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeE----------------------
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRV---------------------- 154 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i---------------------- 154 (337)
+++++++|+... .++++++.+++|++++|+||||||||||+++|+|+++|+. +.|
T Consensus 5 ~~~l~~~~~~~~--il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~-G~i~~~g~~~~~~~~~~~~~~~~~~ 81 (242)
T PRK11124 5 LNGINCFYGAHQ--ALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRS-GTLNIAGNHFDFSKTPSDKAIRELR 81 (242)
T ss_pred EEeeEEEECCee--eEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc-eEEEECCEecccccccchhhHHHHH
Confidence 568999997654 4999999999999999999999999999999999998763 333
Q ss_pred ---EEEcCCcccccCCCCcccc------------------c-------cc----chhccCCCcchhHHHHHHHHHhhCCc
Q 019702 155 ---VIVDTSNEIGGDGDIPHSA------------------I-------GT----ARRMQVPEPSLQHKVMIEAVENHMPE 202 (337)
Q Consensus 155 ---~~v~~~~ei~~~~~~~~~~------------------~-------~~----~~~~~~~S~g~k~r~~ia~al~~~P~ 202 (337)
.++.+...+.....+.++. + +. .+....+|+||+||++||+|++.+|+
T Consensus 82 ~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~ 161 (242)
T PRK11124 82 RNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQ 161 (242)
T ss_pred hheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 3333222111000000000 0 00 02234479999999999999999999
Q ss_pred EEEEcCCCCHHHH-------HHHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHH
Q 019702 203 VIIVDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARA 265 (337)
Q Consensus 203 vlilDEp~~~ld~-------~~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~ 265 (337)
++|+||||+++|. +.+.++.++|.|+|++||+.++...+||+++ ++.+|+++..|+++++.
T Consensus 162 llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~--~l~~g~i~~~~~~~~~~ 229 (242)
T PRK11124 162 VLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVV--YMENGHIVEQGDASCFT 229 (242)
T ss_pred EEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEE--EEECCEEEEeCCHHHhc
Confidence 9999999999995 3455555679999999999999988999999 99999999999988754
No 98
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.96 E-value=1.5e-28 Score=226.98 Aligned_cols=166 Identities=20% Similarity=0.332 Sum_probs=129.0
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCC------------------CeEEEEc
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ------------------KRVVIVD 158 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~------------------~~i~~v~ 158 (337)
+++++++|+...+ ++++++.+++|++++|+||||||||||+++|+|+++|+.+ ..+.++.
T Consensus 4 ~~~l~~~~~~~~i--l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~ 81 (256)
T TIGR03873 4 LSRVSWSAGGRLI--VDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALVE 81 (256)
T ss_pred EEeEEEEECCEEE--EeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEEec
Confidence 6789999976544 9999999999999999999999999999999999988732 1244554
Q ss_pred CCcccccC---------CCCcc---------c---ccc-c----------chhccCCCcchhHHHHHHHHHhhCCcEEEE
Q 019702 159 TSNEIGGD---------GDIPH---------S---AIG-T----------ARRMQVPEPSLQHKVMIEAVENHMPEVIIV 206 (337)
Q Consensus 159 ~~~ei~~~---------~~~~~---------~---~~~-~----------~~~~~~~S~g~k~r~~ia~al~~~P~vlil 206 (337)
+...+... ..... . .+. . .+....+|+||+||+++|+|++.+|+++|+
T Consensus 82 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llll 161 (256)
T TIGR03873 82 QDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQEPKLLLL 161 (256)
T ss_pred ccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 43321110 00000 0 000 0 012334799999999999999999999999
Q ss_pred cCCCCHHHH-------HHHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHH
Q 019702 207 DEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (337)
Q Consensus 207 DEp~~~ld~-------~~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~ 266 (337)
||||+++|. +.+.++.++|.|||++||+.+.+..+||+++ ++++|+++..|+++++..
T Consensus 162 DEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~--~l~~G~i~~~g~~~~~~~ 226 (256)
T TIGR03873 162 DEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVV--VLDGGRVVAAGPPREVLT 226 (256)
T ss_pred cCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE--EEeCCCEEEecCHHHhhC
Confidence 999999995 3455556668999999999999999999999 999999999999988764
No 99
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.96 E-value=1.4e-28 Score=237.19 Aligned_cols=164 Identities=15% Similarity=0.152 Sum_probs=125.7
Q ss_pred eEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEE-----------------------
Q 019702 99 GLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVV----------------------- 155 (337)
Q Consensus 99 ~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~----------------------- 155 (337)
+++++|+... . ++++.+++|++++|+|||||||||||++|+|+++|+. +.|.
T Consensus 5 ~l~k~~~~~~---~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~-G~I~~~g~~~~~~~~~~~~~~~~~~i~ 79 (352)
T PRK11144 5 NFKQQLGDLC---L-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQK-GRIVLNGRVLFDAEKGICLPPEKRRIG 79 (352)
T ss_pred EEEEEeCCEE---E-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc-eEEEECCEEccccccccccchhhCCEE
Confidence 7889997632 3 7999999999999999999999999999999998873 3332
Q ss_pred EEcCCcccccCCCCccc-----------cc-------cc----chhccCCCcchhHHHHHHHHHhhCCcEEEEcCCCCHH
Q 019702 156 IVDTSNEIGGDGDIPHS-----------AI-------GT----ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEA 213 (337)
Q Consensus 156 ~v~~~~ei~~~~~~~~~-----------~~-------~~----~~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~~l 213 (337)
++.+...+.....+.++ .+ +. .+....+|+||+||++||+|++.+|++|++||||+++
T Consensus 80 ~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~llLLDEPts~L 159 (352)
T PRK11144 80 YVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASL 159 (352)
T ss_pred EEcCCcccCCCCcHHHHHHhhhhhhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccC
Confidence 22222111100000000 00 00 1233457999999999999999999999999999999
Q ss_pred HH-------HHHHHHHhc-CCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHhhh
Q 019702 214 EA-------HACRSIAER-GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARRCQ 269 (337)
Q Consensus 214 d~-------~~l~~~~~~-G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~~~ 269 (337)
|. +.+.++.++ |.|+|++||+.+++..+||+++ +|++|+++..|++++++.++.
T Consensus 160 D~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~--~l~~G~i~~~g~~~~i~~~p~ 221 (352)
T PRK11144 160 DLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVV--VLEQGKVKAFGPLEEVWASSA 221 (352)
T ss_pred CHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEE--EEeCCEEEEecCHHHHHhCcc
Confidence 95 345555554 8999999999999999999999 999999999999999988653
No 100
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.96 E-value=1.1e-28 Score=214.89 Aligned_cols=152 Identities=18% Similarity=0.232 Sum_probs=113.8
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEcCC----------cccccC
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTS----------NEIGGD 166 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~~~----------~ei~~~ 166 (337)
+++++++|+......++++++.+++|++++|+||||||||||+++|+|+++|+ .+.+.+-... ..+++.
T Consensus 3 ~~~l~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~-~G~i~~~g~~~~~~~~~~~~~~i~~~ 81 (173)
T cd03246 3 VENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPT-SGRVRLDGADISQWDPNELGDHVGYL 81 (173)
T ss_pred EEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCC-CCeEEECCEEcccCCHHHHHhheEEE
Confidence 56899999753223599999999999999999999999999999999999887 4444432110 011111
Q ss_pred CCCcccc-cccch-hccCCCcchhHHHHHHHHHhhCCcEEEEcCCCCHHHH-------HHHHHHHhcCCeEEEEEcCcch
Q 019702 167 GDIPHSA-IGTAR-RMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWL 237 (337)
Q Consensus 167 ~~~~~~~-~~~~~-~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~~ld~-------~~l~~~~~~G~tvi~t~H~~~~ 237 (337)
++.. +.... .-.++|+||+||++||+|++.+|++||+||||+++|. +.+..+.++|.|+|++||+.++
T Consensus 82 ---~q~~~~~~~tv~~~lLS~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~ 158 (173)
T cd03246 82 ---PQDDELFSGSIAENILSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPET 158 (173)
T ss_pred ---CCCCccccCcHHHHCcCHHHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence 1110 00000 0112899999999999999999999999999999994 3455556668999999999998
Q ss_pred hHHhhchHHHHHhcCceE
Q 019702 238 ENIIKNPILSDLIGGVDT 255 (337)
Q Consensus 238 ~~~~~d~v~~~ll~~G~i 255 (337)
+. .||+++ ++++|++
T Consensus 159 ~~-~~d~v~--~l~~G~i 173 (173)
T cd03246 159 LA-SADRIL--VLEDGRV 173 (173)
T ss_pred HH-hCCEEE--EEECCCC
Confidence 75 799999 8887753
No 101
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.95 E-value=4.1e-30 Score=222.65 Aligned_cols=166 Identities=17% Similarity=0.213 Sum_probs=132.5
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEcCCccc-c-------cCCC
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEI-G-------GDGD 168 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~~~~ei-~-------~~~~ 168 (337)
+.+++++|....+ ++++++.+++||+++++||||+||||.+.++.|+++|+. ++|.+-+....- . +.+.
T Consensus 7 a~~l~K~y~kr~V--v~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~-G~i~ld~~diT~lPm~~RArlGigY 83 (243)
T COG1137 7 AENLAKSYKKRKV--VNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDS-GKILLDDEDITKLPMHKRARLGIGY 83 (243)
T ss_pred ehhhhHhhCCeee--eeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCC-ceEEECCcccccCChHHHhhcCccc
Confidence 4589999988777 999999999999999999999999999999999999983 444432221100 0 0011
Q ss_pred Ccccc----------------------cc---------c-----------chhccCCCcchhHHHHHHHHHhhCCcEEEE
Q 019702 169 IPHSA----------------------IG---------T-----------ARRMQVPEPSLQHKVMIEAVENHMPEVIIV 206 (337)
Q Consensus 169 ~~~~~----------------------~~---------~-----------~~~~~~~S~g~k~r~~ia~al~~~P~vlil 206 (337)
+|+.. .. . ......+|||+++|+.|||||+.+|++++|
T Consensus 84 LpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~~P~fiLL 163 (243)
T COG1137 84 LPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKFILL 163 (243)
T ss_pred ccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHhcCCCEEEe
Confidence 11110 00 0 012234699999999999999999999999
Q ss_pred cCCCCHHHH-------HHHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHh
Q 019702 207 DEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (337)
Q Consensus 207 DEp~~~ld~-------~~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~ 267 (337)
|||+++.|+ +.+..++++|..|++|-|+..+.-.+|||.+ +++.|++++.|+|+++.++
T Consensus 164 DEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaY--Ii~~G~vla~G~p~ei~~n 229 (243)
T COG1137 164 DEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAY--IISDGKVLAEGSPEEIVNN 229 (243)
T ss_pred cCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEE--EEecCeEEecCCHHHHhcC
Confidence 999999984 4567788899999999999999999999999 9999999999999999875
No 102
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.95 E-value=1.2e-28 Score=235.53 Aligned_cols=170 Identities=14% Similarity=0.159 Sum_probs=130.0
Q ss_pred EeeEEEEECC--ccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHcccccc--CCC--------------------
Q 019702 97 IVGLTCRVGR--AVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDE--FQK-------------------- 152 (337)
Q Consensus 97 i~~l~~r~~~--~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~--~~~-------------------- 152 (337)
++++++.|.. ....+++++++.+++|++++|+|+||||||||+++|+|+++|. ..+
T Consensus 15 i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~~~~ 94 (330)
T PRK09473 15 VKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKL 94 (330)
T ss_pred EeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHHHHH
Confidence 6688888853 1223599999999999999999999999999999999999873 112
Q ss_pred ---eEEEEcCCcc--cccC--------------CCCcccc-----------ccc-------chhccCCCcchhHHHHHHH
Q 019702 153 ---RVVIVDTSNE--IGGD--------------GDIPHSA-----------IGT-------ARRMQVPEPSLQHKVMIEA 195 (337)
Q Consensus 153 ---~i~~v~~~~e--i~~~--------------~~~~~~~-----------~~~-------~~~~~~~S~g~k~r~~ia~ 195 (337)
.+.++.+... +... ....... ++. .+....+|+||+||++||+
T Consensus 95 r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QRv~IAr 174 (330)
T PRK09473 95 RAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAM 174 (330)
T ss_pred hcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHHHHHHHH
Confidence 3555554431 1000 0000000 000 0123457999999999999
Q ss_pred HHhhCCcEEEEcCCCCHHHH-------HHHHHHHhc-CCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHh
Q 019702 196 VENHMPEVIIVDEIGTEAEA-------HACRSIAER-GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (337)
Q Consensus 196 al~~~P~vlilDEp~~~ld~-------~~l~~~~~~-G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~ 267 (337)
|++.+|++||+||||+++|. +.+.++.++ |.|+|++|||++.+..+||+++ +|++|++++.|++++++..
T Consensus 175 AL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~--vm~~G~ive~g~~~~i~~~ 252 (330)
T PRK09473 175 ALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVL--VMYAGRTMEYGNARDVFYQ 252 (330)
T ss_pred HHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEE--EEECCEEEEECCHHHHHhC
Confidence 99999999999999999994 445666654 8999999999999989999999 9999999999999999875
Q ss_pred h
Q 019702 268 C 268 (337)
Q Consensus 268 ~ 268 (337)
+
T Consensus 253 p 253 (330)
T PRK09473 253 P 253 (330)
T ss_pred C
Confidence 4
No 103
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=3.5e-28 Score=227.73 Aligned_cols=168 Identities=15% Similarity=0.202 Sum_probs=127.4
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCC--Ce-------------------EE
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ--KR-------------------VV 155 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~--~~-------------------i~ 155 (337)
+++++++|.+.....++++++.+.+|++++|+||||||||||+++|+|++.|+.+ +. +.
T Consensus 8 i~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~~ig 87 (282)
T PRK13640 8 FKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIREKVG 87 (282)
T ss_pred EEEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHhheE
Confidence 6789999965332359999999999999999999999999999999999988642 33 33
Q ss_pred EEcCCcc-cccCCC-------------Ccccc----cc-c----------chhccCCCcchhHHHHHHHHHhhCCcEEEE
Q 019702 156 IVDTSNE-IGGDGD-------------IPHSA----IG-T----------ARRMQVPEPSLQHKVMIEAVENHMPEVIIV 206 (337)
Q Consensus 156 ~v~~~~e-i~~~~~-------------~~~~~----~~-~----------~~~~~~~S~g~k~r~~ia~al~~~P~vlil 206 (337)
++.+... ...... ..... +. . .+....+|+||+||++||+|++.+|++||+
T Consensus 88 ~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~~~P~llll 167 (282)
T PRK13640 88 IVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIIL 167 (282)
T ss_pred EEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 4433321 000000 00000 00 0 022345799999999999999999999999
Q ss_pred cCCCCHHHH-------HHHHHHHhc-CCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHh
Q 019702 207 DEIGTEAEA-------HACRSIAER-GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (337)
Q Consensus 207 DEp~~~ld~-------~~l~~~~~~-G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~ 267 (337)
|||++++|. +.+.++.++ |.|||++||+++++. .||+++ ++++|++++.|++++++..
T Consensus 168 DEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~-~~d~i~--~l~~G~i~~~g~~~~~~~~ 233 (282)
T PRK13640 168 DESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEAN-MADQVL--VLDDGKLLAQGSPVEIFSK 233 (282)
T ss_pred ECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH-hCCEEE--EEECCEEEEeCCHHHHhcC
Confidence 999999995 345555554 899999999999885 799999 9999999999999998764
No 104
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=1.6e-28 Score=227.85 Aligned_cols=166 Identities=13% Similarity=0.191 Sum_probs=127.8
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCC------------------CeEEEEc
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ------------------KRVVIVD 158 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~------------------~~i~~v~ 158 (337)
+++++++|++.. .++++++.+.+|++++|+||||||||||+++|+|+++|+.+ ..+.++.
T Consensus 14 i~~l~~~~~~~~--il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~ 91 (265)
T PRK10575 14 LRNVSFRVPGRT--LLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVAYLP 91 (265)
T ss_pred EeeEEEEECCEE--EEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheEEec
Confidence 668999997654 49999999999999999999999999999999999987632 1244444
Q ss_pred CCcccccCCCC-----------------ccc----ccc-c----------chhccCCCcchhHHHHHHHHHhhCCcEEEE
Q 019702 159 TSNEIGGDGDI-----------------PHS----AIG-T----------ARRMQVPEPSLQHKVMIEAVENHMPEVIIV 206 (337)
Q Consensus 159 ~~~ei~~~~~~-----------------~~~----~~~-~----------~~~~~~~S~g~k~r~~ia~al~~~P~vlil 206 (337)
+...+.....+ ... .+. . .+....+|+||+||+++|+|++.+|++||+
T Consensus 92 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lllL 171 (265)
T PRK10575 92 QQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLL 171 (265)
T ss_pred cCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 43221110000 000 000 0 022345799999999999999999999999
Q ss_pred cCCCCHHHHH-------HHHHHHhc-CCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHH
Q 019702 207 DEIGTEAEAH-------ACRSIAER-GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (337)
Q Consensus 207 DEp~~~ld~~-------~l~~~~~~-G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~ 266 (337)
||||+++|.. .+.++.++ |.|||++||+.+++..+||+++ ++++|+++..|+++++..
T Consensus 172 DEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~--~l~~G~i~~~~~~~~~~~ 237 (265)
T PRK10575 172 DEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLV--ALRGGEMIAQGTPAELMR 237 (265)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE--EEECCeEEEecCHHHhcC
Confidence 9999999953 45555554 8999999999999989999999 999999999999988765
No 105
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=1.3e-28 Score=240.02 Aligned_cols=156 Identities=14% Similarity=0.170 Sum_probs=120.1
Q ss_pred chhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCC----------------------CeEEEEcCCcccccCCC
Q 019702 111 HIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ----------------------KRVVIVDTSNEIGGDGD 168 (337)
Q Consensus 111 ~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~----------------------~~i~~v~~~~ei~~~~~ 168 (337)
.++++++.+++|++++|+||||||||||+++|+|+++|+.+ .++.|+.+...+.....
T Consensus 43 ~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~T 122 (400)
T PRK10070 43 GVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMT 122 (400)
T ss_pred EEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCC
Confidence 48899999999999999999999999999999999988732 12344443322211000
Q ss_pred -------------Ccccc----c-------cc----chhccCCCcchhHHHHHHHHHhhCCcEEEEcCCCCHHHH-----
Q 019702 169 -------------IPHSA----I-------GT----ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEA----- 215 (337)
Q Consensus 169 -------------~~~~~----~-------~~----~~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~~ld~----- 215 (337)
++... + +. .+....+|+||+||++||+||+.+|++||+||||+++|.
T Consensus 123 v~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~ 202 (400)
T PRK10070 123 VLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTE 202 (400)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHH
Confidence 00000 0 00 022345799999999999999999999999999999995
Q ss_pred --HHHHHHHh-cCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHhh
Q 019702 216 --HACRSIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARRC 268 (337)
Q Consensus 216 --~~l~~~~~-~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~~ 268 (337)
+.+.++.+ .|.|||++||+.+++..+||+++ +|++|+++..|++++++..+
T Consensus 203 l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~--vL~~G~i~~~g~~~~l~~~~ 256 (400)
T PRK10070 203 MQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIA--IMQNGEVVQVGTPDEILNNP 256 (400)
T ss_pred HHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEE--EEECCEEEecCCHHHHHhCc
Confidence 34555554 58999999999999999999999 99999999999999987643
No 106
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=1.9e-28 Score=228.94 Aligned_cols=167 Identities=18% Similarity=0.198 Sum_probs=128.2
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCe-------------------EEEE
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKR-------------------VVIV 157 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~-------------------i~~v 157 (337)
+++++++|+... ..++++++.+++|++++|+||||||||||+++|+|+++|+. +. +.++
T Consensus 6 ~~~l~~~~~~~~-~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~-G~i~~~g~~~~~~~~~~~~~~i~~v 83 (277)
T PRK13652 6 TRDLCYSYSGSK-EALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTS-GSVLIRGEPITKENIREVRKFVGLV 83 (277)
T ss_pred EEEEEEEeCCCC-ceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCc-eEEEECCEECCcCCHHHHHhheEEE
Confidence 669999996322 24999999999999999999999999999999999998873 33 3333
Q ss_pred cCCcc--cccC------------CCCcccc----c-------c----cchhccCCCcchhHHHHHHHHHhhCCcEEEEcC
Q 019702 158 DTSNE--IGGD------------GDIPHSA----I-------G----TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDE 208 (337)
Q Consensus 158 ~~~~e--i~~~------------~~~~~~~----~-------~----~~~~~~~~S~g~k~r~~ia~al~~~P~vlilDE 208 (337)
.+... +... ..+.... + + ..+....+|+||+||++||+|++.+|++||+||
T Consensus 84 ~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~llilDE 163 (277)
T PRK13652 84 FQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDE 163 (277)
T ss_pred ecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 33221 1000 0000000 0 0 012244579999999999999999999999999
Q ss_pred CCCHHHH-------HHHHHHHhc-CCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHh
Q 019702 209 IGTEAEA-------HACRSIAER-GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (337)
Q Consensus 209 p~~~ld~-------~~l~~~~~~-G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~ 267 (337)
||+++|. +.+.++.++ |.|||++||+.+++..+||+++ ++++|+++..|++++++..
T Consensus 164 Pt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~--~l~~G~i~~~g~~~~~~~~ 228 (277)
T PRK13652 164 PTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIY--VMDKGRIVAYGTVEEIFLQ 228 (277)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEE--EEECCeEEEECCHHHHhcC
Confidence 9999994 345555554 8999999999999989999999 9999999999999998764
No 107
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.95 E-value=1.6e-28 Score=222.46 Aligned_cols=161 Identities=19% Similarity=0.224 Sum_probs=120.4
Q ss_pred EeeEEEEECCcc--ccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCC---------------------Ce
Q 019702 97 IVGLTCRVGRAV--SGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ---------------------KR 153 (337)
Q Consensus 97 i~~l~~r~~~~~--~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~---------------------~~ 153 (337)
+++++++|+... ...++++++.+++|++++|+||||||||||+++|+|+++|+.+ ..
T Consensus 4 ~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 83 (228)
T cd03257 4 VKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRRKE 83 (228)
T ss_pred EEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhhcc
Confidence 578999997541 1249999999999999999999999999999999999987632 12
Q ss_pred EEEEcCCcc--cccCCC-------------Cc--ccc-----------ccc-----chhccCCCcchhHHHHHHHHHhhC
Q 019702 154 VVIVDTSNE--IGGDGD-------------IP--HSA-----------IGT-----ARRMQVPEPSLQHKVMIEAVENHM 200 (337)
Q Consensus 154 i~~v~~~~e--i~~~~~-------------~~--~~~-----------~~~-----~~~~~~~S~g~k~r~~ia~al~~~ 200 (337)
+.++.+... +..... .. ... ++. ......+|+||+||++||+|++.+
T Consensus 84 i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~ 163 (228)
T cd03257 84 IQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALN 163 (228)
T ss_pred EEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHHhcC
Confidence 444444331 110000 00 000 000 012234799999999999999999
Q ss_pred CcEEEEcCCCCHHHH-------HHHHHHHhc-CCeEEEEEcCcchhHHhhchHHHHHhcCceEEEec
Q 019702 201 PEVIIVDEIGTEAEA-------HACRSIAER-GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLG 259 (337)
Q Consensus 201 P~vlilDEp~~~ld~-------~~l~~~~~~-G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g 259 (337)
|++|++||||+++|. +.+.+++++ |.|||++||+.+.+..+||+++ ++++|+++..|
T Consensus 164 p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~--~l~~G~i~~~g 228 (228)
T cd03257 164 PKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVA--VMYAGKIVEEG 228 (228)
T ss_pred CCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEE--EEeCCEEEecC
Confidence 999999999999995 345555555 8999999999999988999999 99999987654
No 108
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=1.7e-28 Score=214.68 Aligned_cols=153 Identities=16% Similarity=0.227 Sum_probs=114.6
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEcCC------------cccc
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTS------------NEIG 164 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~~~------------~ei~ 164 (337)
+++++++|+... .++++++.+++|++++|+||||||||||+++|+|+++|+ .+.|.+-... ..++
T Consensus 3 ~~~l~~~~~~~~--~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~-~G~i~~~g~~~~~~~~~~~~~~~~i~ 79 (178)
T cd03229 3 LKNVSKRYGQKT--VLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPD-SGSILIDGEDLTDLEDELPPLRRRIG 79 (178)
T ss_pred EEEEEEEECCeE--EEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-ceEEEECCEEccccchhHHHHhhcEE
Confidence 568999997644 499999999999999999999999999999999999886 4455432211 0011
Q ss_pred cCCCCcccc--cccchhccC-CCcchhHHHHHHHHHhhCCcEEEEcCCCCHHHH-------HHHHHHHhc-CCeEEEEEc
Q 019702 165 GDGDIPHSA--IGTARRMQV-PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEA-------HACRSIAER-GVMLIGTAH 233 (337)
Q Consensus 165 ~~~~~~~~~--~~~~~~~~~-~S~g~k~r~~ia~al~~~P~vlilDEp~~~ld~-------~~l~~~~~~-G~tvi~t~H 233 (337)
+....+... ......... +|+||+||+++|+|++.+|+++++|||++++|. +.+.+++++ |.|+|++||
T Consensus 80 ~~~q~~~~~~~~t~~~~l~~~lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH 159 (178)
T cd03229 80 MVFQDFALFPHLTVLENIALGLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTH 159 (178)
T ss_pred EEecCCccCCCCCHHHheeecCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 110000000 000111222 899999999999999999999999999999995 345555666 799999999
Q ss_pred CcchhHHhhchHHHHHhcCce
Q 019702 234 GEWLENIIKNPILSDLIGGVD 254 (337)
Q Consensus 234 ~~~~~~~~~d~v~~~ll~~G~ 254 (337)
+.++...+||+++ ++++|+
T Consensus 160 ~~~~~~~~~d~i~--~l~~g~ 178 (178)
T cd03229 160 DLDEAARLADRVV--VLRDGK 178 (178)
T ss_pred CHHHHHHhcCEEE--EEeCCC
Confidence 9999988999998 777663
No 109
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=1.9e-28 Score=225.89 Aligned_cols=166 Identities=17% Similarity=0.187 Sum_probs=127.3
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCC-------------------eEEEE
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK-------------------RVVIV 157 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~-------------------~i~~v 157 (337)
+++++++|+.... ++++++.+++|++++|+||||||||||+++|+|+++|+.+. .+.++
T Consensus 8 ~~~l~~~~~~~~~--l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~ 85 (255)
T PRK11300 8 VSGLMMRFGGLLA--VNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGVVRT 85 (255)
T ss_pred EeeEEEEECCEEE--EEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCeEEe
Confidence 6789999976544 99999999999999999999999999999999999887321 13333
Q ss_pred cCCcccccCCCCcc--------------------------c------cc-------cc----chhccCCCcchhHHHHHH
Q 019702 158 DTSNEIGGDGDIPH--------------------------S------AI-------GT----ARRMQVPEPSLQHKVMIE 194 (337)
Q Consensus 158 ~~~~ei~~~~~~~~--------------------------~------~~-------~~----~~~~~~~S~g~k~r~~ia 194 (337)
.+...+.....+.+ . .. +. .+....+|+||+||++||
T Consensus 86 ~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la 165 (255)
T PRK11300 86 FQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQRRLEIA 165 (255)
T ss_pred ccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCCHHHHHHHHHH
Confidence 33321111000000 0 00 00 022334699999999999
Q ss_pred HHHhhCCcEEEEcCCCCHHHH-------HHHHHHHhc-CCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHH
Q 019702 195 AVENHMPEVIIVDEIGTEAEA-------HACRSIAER-GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (337)
Q Consensus 195 ~al~~~P~vlilDEp~~~ld~-------~~l~~~~~~-G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~ 266 (337)
+|++.+|++||+||||+++|. +.+.+++++ |.|||++||+.+++..+||+++ ++++|+++..|++++++.
T Consensus 166 ~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~--~l~~g~i~~~~~~~~~~~ 243 (255)
T PRK11300 166 RCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIY--VVNQGTPLANGTPEEIRN 243 (255)
T ss_pred HHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEE--EEECCeEEecCCHHHHhh
Confidence 999999999999999999995 345555554 8999999999999999999999 999999999999988765
No 110
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.95 E-value=1.4e-28 Score=220.88 Aligned_cols=157 Identities=20% Similarity=0.242 Sum_probs=118.8
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCC-------------CeEEEEcCCccc
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ-------------KRVVIVDTSNEI 163 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~-------------~~i~~v~~~~ei 163 (337)
+++++++|+... .++++++.+.+|++++|+||||||||||+++|+|+++|+.+ ..+.++.+...+
T Consensus 2 ~~~l~~~~~~~~--~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~~ 79 (213)
T cd03235 2 VEDLTVSYGGHP--VLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQRRSI 79 (213)
T ss_pred cccceeEECCEE--eeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheEEecccccc
Confidence 468999997644 49999999999999999999999999999999999988732 124555544322
Q ss_pred c--cCC---------CCc---------cc---cc-------cc----chhccCCCcchhHHHHHHHHHhhCCcEEEEcCC
Q 019702 164 G--GDG---------DIP---------HS---AI-------GT----ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEI 209 (337)
Q Consensus 164 ~--~~~---------~~~---------~~---~~-------~~----~~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp 209 (337)
. +.. ... .. .+ +. .+....+|+||+||++||+|++.+|++||+|||
T Consensus 80 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEP 159 (213)
T cd03235 80 DRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEP 159 (213)
T ss_pred ccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 0 000 000 00 00 00 023445799999999999999999999999999
Q ss_pred CCHHHH-------HHHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEe
Q 019702 210 GTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 258 (337)
Q Consensus 210 ~~~ld~-------~~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~ 258 (337)
|+++|. +.+.+++++|.|||++||+.+++..+||+++ +|++| +++.
T Consensus 160 t~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~--~l~~~-~~~~ 212 (213)
T cd03235 160 FAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVL--LLNRT-VVAS 212 (213)
T ss_pred cccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEE--EEcCc-Eeec
Confidence 999995 3455556678999999999999999999999 88775 5544
No 111
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.95 E-value=2.3e-28 Score=222.95 Aligned_cols=167 Identities=19% Similarity=0.203 Sum_probs=126.7
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCC------------------CeEEEEc
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ------------------KRVVIVD 158 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~------------------~~i~~v~ 158 (337)
+++++++|+......++++++.+.+|++++|+||||||||||+++|+|+++|+.+ ..+.+++
T Consensus 3 ~~~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~ 82 (237)
T cd03252 3 FEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGVVL 82 (237)
T ss_pred EEEEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEEEc
Confidence 5789999964322358999999999999999999999999999999999987632 1244554
Q ss_pred CCcccccC----------CCCccccc-------c--c-------------chhccCCCcchhHHHHHHHHHhhCCcEEEE
Q 019702 159 TSNEIGGD----------GDIPHSAI-------G--T-------------ARRMQVPEPSLQHKVMIEAVENHMPEVIIV 206 (337)
Q Consensus 159 ~~~ei~~~----------~~~~~~~~-------~--~-------------~~~~~~~S~g~k~r~~ia~al~~~P~vlil 206 (337)
+...+... .......+ + . ......+|+||+||++||+|++.+|++||+
T Consensus 83 q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llll 162 (237)
T cd03252 83 QENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIF 162 (237)
T ss_pred CCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCEEEE
Confidence 44322100 00000000 0 0 012356899999999999999999999999
Q ss_pred cCCCCHHHHH-------HHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHh
Q 019702 207 DEIGTEAEAH-------ACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (337)
Q Consensus 207 DEp~~~ld~~-------~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~ 267 (337)
||||+++|.. .+.++. +|.|||++||+.+++. .||+++ ++++|+++..|++++++..
T Consensus 163 DEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~sH~~~~~~-~~d~v~--~l~~G~i~~~~~~~~~~~~ 226 (237)
T cd03252 163 DEATSALDYESEHAIMRNMHDIC-AGRTVIIIAHRLSTVK-NADRII--VMEKGRIVEQGSHDELLAE 226 (237)
T ss_pred eCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHHHH-hCCEEE--EEECCEEEEEcCHHHHHhc
Confidence 9999999953 344444 4899999999999885 599999 9999999999999988753
No 112
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.95 E-value=2.8e-28 Score=226.35 Aligned_cols=166 Identities=17% Similarity=0.253 Sum_probs=128.1
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCC------------------CeEEEEc
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ------------------KRVVIVD 158 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~------------------~~i~~v~ 158 (337)
+++++++|+.... ++++++.+.+|++++|+||||||||||+++|+|+++|+.+ ..+.+++
T Consensus 10 i~~l~~~~~~~~~--l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~ 87 (265)
T PRK10253 10 GEQLTLGYGKYTV--AENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIGLLA 87 (265)
T ss_pred EEEEEEEECCEEE--eeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhheEEee
Confidence 6799999986544 9999999999999999999999999999999999987632 1234444
Q ss_pred CCcccccC---------CCCcc---------c---cccc-----------chhccCCCcchhHHHHHHHHHhhCCcEEEE
Q 019702 159 TSNEIGGD---------GDIPH---------S---AIGT-----------ARRMQVPEPSLQHKVMIEAVENHMPEVIIV 206 (337)
Q Consensus 159 ~~~ei~~~---------~~~~~---------~---~~~~-----------~~~~~~~S~g~k~r~~ia~al~~~P~vlil 206 (337)
+...+... ...+. . .+.. .+....+|+||+||++||+|++.+|++|++
T Consensus 88 q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llll 167 (265)
T PRK10253 88 QNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLL 167 (265)
T ss_pred ccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHhcCCCEEEE
Confidence 33221110 00000 0 0000 123345799999999999999999999999
Q ss_pred cCCCCHHHH-------HHHHHHHh-cCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHH
Q 019702 207 DEIGTEAEA-------HACRSIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (337)
Q Consensus 207 DEp~~~ld~-------~~l~~~~~-~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~ 266 (337)
||||+++|. +.+.++.+ .|.|+|++||+.+++..+||+++ ++++|+++..|+++++..
T Consensus 168 DEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~--~l~~G~i~~~g~~~~~~~ 233 (265)
T PRK10253 168 DEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLI--ALREGKIVAQGAPKEIVT 233 (265)
T ss_pred eCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE--EEECCEEEEeCCHHHHhh
Confidence 999999995 34555555 48999999999999999999999 999999999999988764
No 113
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.95 E-value=1.3e-28 Score=221.09 Aligned_cols=153 Identities=16% Similarity=0.208 Sum_probs=114.9
Q ss_pred EeeEEEEEC-CccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeE---------------------
Q 019702 97 IVGLTCRVG-RAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRV--------------------- 154 (337)
Q Consensus 97 i~~l~~r~~-~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i--------------------- 154 (337)
+++++++|+ ... .++++++.+++|++++|+||||||||||+++|+|+++|+. +.|
T Consensus 4 ~~~l~~~~~~~~~--il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~-G~i~~~g~~~~~~~~~~~~~~~~~ 80 (214)
T TIGR02673 4 FHNVSKAYPGGVA--ALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSR-GQVRIAGEDVNRLRGRQLPLLRRR 80 (214)
T ss_pred EEeeeEEeCCCce--eecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC-ceEEECCEEcccCCHHHHHHHHhh
Confidence 678999994 333 4999999999999999999999999999999999998763 333
Q ss_pred -EEEcCCcccccCCCCccc-----------------cc-------cc----chhccCCCcchhHHHHHHHHHhhCCcEEE
Q 019702 155 -VIVDTSNEIGGDGDIPHS-----------------AI-------GT----ARRMQVPEPSLQHKVMIEAVENHMPEVII 205 (337)
Q Consensus 155 -~~v~~~~ei~~~~~~~~~-----------------~~-------~~----~~~~~~~S~g~k~r~~ia~al~~~P~vli 205 (337)
.++.+...+.....+.++ .+ +. .+....+|+||+||++||+|++.+|++||
T Consensus 81 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~lll 160 (214)
T TIGR02673 81 IGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLL 160 (214)
T ss_pred eEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEE
Confidence 333332221100000000 00 00 01234579999999999999999999999
Q ss_pred EcCCCCHHHH-------HHHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCce
Q 019702 206 VDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVD 254 (337)
Q Consensus 206 lDEp~~~ld~-------~~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~ 254 (337)
+||||+++|. +.+.++.++|.|+|++||+.+++..+||+++ ++++|+
T Consensus 161 LDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~--~l~~G~ 214 (214)
T TIGR02673 161 ADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVI--ILDDGR 214 (214)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEE--EecCCC
Confidence 9999999995 3455555668999999999999999999999 887764
No 114
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=2.6e-28 Score=233.40 Aligned_cols=170 Identities=18% Similarity=0.152 Sum_probs=129.5
Q ss_pred EeeEEEEECCc--cccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccc----cCC-------------------
Q 019702 97 IVGLTCRVGRA--VSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSD----EFQ------------------- 151 (337)
Q Consensus 97 i~~l~~r~~~~--~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~----~~~------------------- 151 (337)
+++++++|... ...+++++++.+.+|++++|+|+||||||||+++|+|++++ +.+
T Consensus 6 v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 85 (330)
T PRK15093 6 IRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERRK 85 (330)
T ss_pred EeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHHHH
Confidence 67899999421 12359999999999999999999999999999999999863 211
Q ss_pred ---CeEEEEcCCcccccC-------------CC--C-----cc-----cc-------ccc-------chhccCCCcchhH
Q 019702 152 ---KRVVIVDTSNEIGGD-------------GD--I-----PH-----SA-------IGT-------ARRMQVPEPSLQH 189 (337)
Q Consensus 152 ---~~i~~v~~~~ei~~~-------------~~--~-----~~-----~~-------~~~-------~~~~~~~S~g~k~ 189 (337)
..+.++.+....... .. . .. .. ++. .+....+|+||+|
T Consensus 86 ~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSgG~~Q 165 (330)
T PRK15093 86 LVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTEGECQ 165 (330)
T ss_pred HhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHH
Confidence 135555554321100 00 0 00 00 000 0122357999999
Q ss_pred HHHHHHHHhhCCcEEEEcCCCCHHHH-------HHHHHHHh-cCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCH
Q 019702 190 KVMIEAVENHMPEVIIVDEIGTEAEA-------HACRSIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDE 261 (337)
Q Consensus 190 r~~ia~al~~~P~vlilDEp~~~ld~-------~~l~~~~~-~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~ 261 (337)
|++||+||+.+|++||+||||+++|. +.+.++.+ .|.|+|++|||++++..+||+++ +|++|++++.|++
T Consensus 166 Rv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~--vm~~G~ive~g~~ 243 (330)
T PRK15093 166 KVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKIN--VLYCGQTVETAPS 243 (330)
T ss_pred HHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEE--EEECCEEEEECCH
Confidence 99999999999999999999999994 45566665 48999999999999999999999 9999999999999
Q ss_pred HHHHHhh
Q 019702 262 EARARRC 268 (337)
Q Consensus 262 ~~~~~~~ 268 (337)
++++..+
T Consensus 244 ~~i~~~p 250 (330)
T PRK15093 244 KELVTTP 250 (330)
T ss_pred HHHHhCC
Confidence 9988653
No 115
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.95 E-value=1.7e-28 Score=242.49 Aligned_cols=172 Identities=17% Similarity=0.207 Sum_probs=134.2
Q ss_pred EeeEEEEECCcc--ccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccC---CCeE-----------------
Q 019702 97 IVGLTCRVGRAV--SGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEF---QKRV----------------- 154 (337)
Q Consensus 97 i~~l~~r~~~~~--~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~---~~~i----------------- 154 (337)
|+||++.|.... ..+++++||.+.+||.++|+|.+||||||+.++|.|++++.. .+.|
T Consensus 8 V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~ 87 (539)
T COG1123 8 VENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRK 87 (539)
T ss_pred EeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHH
Confidence 778999987553 236899999999999999999999999999999999998762 2333
Q ss_pred ------EEEcCCcccccC----------------C------------------CCcccccccchhccCCCcchhHHHHHH
Q 019702 155 ------VIVDTSNEIGGD----------------G------------------DIPHSAIGTARRMQVPEPSLQHKVMIE 194 (337)
Q Consensus 155 ------~~v~~~~ei~~~----------------~------------------~~~~~~~~~~~~~~~~S~g~k~r~~ia 194 (337)
.+++|++--.+. . ++++.... .+....+||||+||++||
T Consensus 88 ~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~-~~yPheLSGG~rQRv~iA 166 (539)
T COG1123 88 LRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERR-DRYPHQLSGGMRQRVMIA 166 (539)
T ss_pred hccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhh-ccCCcccCchHHHHHHHH
Confidence 333332110000 0 00000000 013456799999999999
Q ss_pred HHHhhCCcEEEEcCCCCHHHH-------HHHHHHH-hcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHH
Q 019702 195 AVENHMPEVIIVDEIGTEAEA-------HACRSIA-ERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (337)
Q Consensus 195 ~al~~~P~vlilDEp~~~ld~-------~~l~~~~-~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~ 266 (337)
+|++.+|++||+||||+++|. ++++.+. +.|.++|++|||+..+..+||+++ +|++|++|+.|+++++++
T Consensus 167 mALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~--Vm~~G~iVE~G~~~~i~~ 244 (539)
T COG1123 167 MALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVV--VMYKGEIVETGPTEEILS 244 (539)
T ss_pred HHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEE--EEECCEEEEecCHHHHHh
Confidence 999999999999999999994 5677776 569999999999999999999999 999999999999999998
Q ss_pred hhhHH
Q 019702 267 RCQKS 271 (337)
Q Consensus 267 ~~~~~ 271 (337)
++...
T Consensus 245 ~p~hp 249 (539)
T COG1123 245 NPQHP 249 (539)
T ss_pred ccCCc
Confidence 75543
No 116
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.95 E-value=1.1e-28 Score=226.73 Aligned_cols=160 Identities=14% Similarity=0.177 Sum_probs=124.3
Q ss_pred hhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEcCCc--------------cccc----CCCCcccc
Q 019702 112 IDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSN--------------EIGG----DGDIPHSA 173 (337)
Q Consensus 112 ~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~~~~--------------ei~~----~~~~~~~~ 173 (337)
++++++.++.|+++.|+|-+|||||||+|++++++.|+. +.|.+-.... .+.. ...+|+..
T Consensus 44 v~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~-G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrt 122 (386)
T COG4175 44 VNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTR-GEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRT 122 (386)
T ss_pred eccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCC-ceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchh
Confidence 677889999999999999999999999999999999984 4444321110 0000 01122221
Q ss_pred ccc---------------------------------chhccCCCcchhHHHHHHHHHhhCCcEEEEcCCCCHHHH-----
Q 019702 174 IGT---------------------------------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEA----- 215 (337)
Q Consensus 174 ~~~---------------------------------~~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~~ld~----- 215 (337)
+.. .+....+|||||||+.+||||+.+|++|++|||+|.+|+
T Consensus 123 Vl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~ 202 (386)
T COG4175 123 VLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTE 202 (386)
T ss_pred HhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHH
Confidence 100 133456799999999999999999999999999999994
Q ss_pred --HHHHHHH-hcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHhhhHHHHh
Q 019702 216 --HACRSIA-ERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARRCQKSILE 274 (337)
Q Consensus 216 --~~l~~~~-~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~~~~~~~~ 274 (337)
+.+.++. +-.+||+++|||++++..+.||+. +|.+|++|+.|+|++++.++......
T Consensus 203 mQdeLl~Lq~~l~KTIvFitHDLdEAlriG~rIa--imkdG~ivQ~Gtp~eIl~~PAndYV~ 262 (386)
T COG4175 203 MQDELLELQAKLKKTIVFITHDLDEALRIGDRIA--IMKDGEIVQVGTPEEILLNPANDYVR 262 (386)
T ss_pred HHHHHHHHHHHhCCeEEEEecCHHHHHhccceEE--EecCCeEEEeCCHHHHHcCccHHHHH
Confidence 3355555 348999999999999999999999 99999999999999999887655443
No 117
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.95 E-value=2.8e-28 Score=223.91 Aligned_cols=166 Identities=14% Similarity=0.121 Sum_probs=126.0
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHcccccc----CCCeE------------------
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDE----FQKRV------------------ 154 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~----~~~~i------------------ 154 (337)
+++++++|+... .++++++.+++|++++|+||||||||||+++|+|+++|+ ..+.|
T Consensus 4 ~~~l~~~~~~~~--~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 81 (247)
T TIGR00972 4 IENLNLFYGEKE--ALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELR 81 (247)
T ss_pred EEEEEEEECCee--eecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHH
Confidence 678999997654 499999999999999999999999999999999999875 02333
Q ss_pred ---EEEcCCcccccC------------CC-Ccccc-----------ccc--------chhccCCCcchhHHHHHHHHHhh
Q 019702 155 ---VIVDTSNEIGGD------------GD-IPHSA-----------IGT--------ARRMQVPEPSLQHKVMIEAVENH 199 (337)
Q Consensus 155 ---~~v~~~~ei~~~------------~~-~~~~~-----------~~~--------~~~~~~~S~g~k~r~~ia~al~~ 199 (337)
.++.+...+... .. .+... ++. .+....+|+||+||+++|+|++.
T Consensus 82 ~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~ 161 (247)
T TIGR00972 82 RRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALAV 161 (247)
T ss_pred hheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHHHHhc
Confidence 333332211100 00 00000 000 01234579999999999999999
Q ss_pred CCcEEEEcCCCCHHHH-------HHHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHh
Q 019702 200 MPEVIIVDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (337)
Q Consensus 200 ~P~vlilDEp~~~ld~-------~~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~ 267 (337)
+|++||+||||+++|. +.+..+.+ +.|+|++||+.+.+..+||+++ +|++|+++..|++++++..
T Consensus 162 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~~~~~~~d~i~--~l~~G~i~~~~~~~~~~~~ 233 (247)
T TIGR00972 162 EPEVLLLDEPTSALDPIATGKIEELIQELKK-KYTIVIVTHNMQQAARISDRTA--FFYDGELVEYGPTEQIFTN 233 (247)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCeEEEEecCHHHHHHhCCEEE--EEECCEEEEeCCHHHHHhC
Confidence 9999999999999995 33445544 4899999999999999999999 9999999999999988653
No 118
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.95 E-value=9.4e-29 Score=211.01 Aligned_cols=168 Identities=19% Similarity=0.204 Sum_probs=133.4
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEcCCccc-------------
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEI------------- 163 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~~~~ei------------- 163 (337)
++++-++|+.... ++.+++....|+.+.|+|.+||||||+||||+=+.+|+ .+.|.+-.+...+
T Consensus 9 v~dlHK~~G~~eV--LKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~-~G~I~v~geei~~k~~~~G~l~~ad~ 85 (256)
T COG4598 9 VEDLHKRYGEHEV--LKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPS-AGSIRVNGEEIRLKRDKDGQLKPADK 85 (256)
T ss_pred hhHHHhhcccchh--hcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCC-CceEEECCeEEEeeeCCCCCeeeCCH
Confidence 5688899998877 99999999999999999999999999999999999998 4455433221110
Q ss_pred ----------ccC----CCCcccc------------cc------------------cc----hhccCCCcchhHHHHHHH
Q 019702 164 ----------GGD----GDIPHSA------------IG------------------TA----RRMQVPEPSLQHKVMIEA 195 (337)
Q Consensus 164 ----------~~~----~~~~~~~------------~~------------------~~----~~~~~~S~g~k~r~~ia~ 195 (337)
+.. ..+.+.. ++ .. .....+||||+||++|||
T Consensus 86 ~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQQR~aIAR 165 (256)
T COG4598 86 RQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAIAR 165 (256)
T ss_pred HHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCchHHHHHHHHH
Confidence 000 0000100 00 00 112346999999999999
Q ss_pred HHhhCCcEEEEcCCCCHHHHH-------HHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHhh
Q 019702 196 VENHMPEVIIVDEIGTEAEAH-------ACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARRC 268 (337)
Q Consensus 196 al~~~P~vlilDEp~~~ld~~-------~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~~ 268 (337)
||+++|+++++||||+.+|.+ .+..+++.|.|.+.+||.|.++..+++.++ ++++|.+-..|+|+++|.++
T Consensus 166 aLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~--fLh~G~iEE~G~P~qvf~nP 243 (256)
T COG4598 166 ALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVI--FLHQGKIEEEGPPEQVFGNP 243 (256)
T ss_pred HHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheE--EeecceecccCChHHHhcCC
Confidence 999999999999999999965 466789999999999999999999999999 99999999999999999764
Q ss_pred h
Q 019702 269 Q 269 (337)
Q Consensus 269 ~ 269 (337)
.
T Consensus 244 ~ 244 (256)
T COG4598 244 Q 244 (256)
T ss_pred C
Confidence 3
No 119
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=2.2e-28 Score=228.17 Aligned_cols=166 Identities=17% Similarity=0.222 Sum_probs=126.2
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeE--------------------EE
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRV--------------------VI 156 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i--------------------~~ 156 (337)
+++++++|.... ..++++++.+++|++++|+||||||||||+++|+|+++|+. +.| .+
T Consensus 4 ~~~l~~~~~~~~-~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~-G~i~~~g~~~~~~~~~~~~~~~i~~ 81 (274)
T PRK13644 4 LENVSYSYPDGT-PALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQK-GKVLVSGIDTGDFSKLQGIRKLVGI 81 (274)
T ss_pred EEEEEEEcCCCC-ceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCC-ceEEECCEECCccccHHHHHhheEE
Confidence 678999995322 25999999999999999999999999999999999998873 333 33
Q ss_pred EcCCccc-ccCCCC-------------ccc----cc-------cc----chhccCCCcchhHHHHHHHHHhhCCcEEEEc
Q 019702 157 VDTSNEI-GGDGDI-------------PHS----AI-------GT----ARRMQVPEPSLQHKVMIEAVENHMPEVIIVD 207 (337)
Q Consensus 157 v~~~~ei-~~~~~~-------------~~~----~~-------~~----~~~~~~~S~g~k~r~~ia~al~~~P~vlilD 207 (337)
+.+.... .....+ ... .+ +. .+....+|+||+||++||+|++.+|++||+|
T Consensus 82 v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLD 161 (274)
T PRK13644 82 VFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFD 161 (274)
T ss_pred EEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 3332210 000000 000 00 00 0223457999999999999999999999999
Q ss_pred CCCCHHHH-------HHHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHh
Q 019702 208 EIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (337)
Q Consensus 208 Ep~~~ld~-------~~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~ 267 (337)
|||+++|. +.+.++++.|.|||++||+++.+. .||+++ ++++|+++..|++++++..
T Consensus 162 EPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~-~~d~v~--~l~~G~i~~~g~~~~~~~~ 225 (274)
T PRK13644 162 EVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELH-DADRII--VMDRGKIVLEGEPENVLSD 225 (274)
T ss_pred CCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHh-hCCEEE--EEECCEEEEECCHHHHhcC
Confidence 99999994 345555667999999999999884 699999 9999999999999998764
No 120
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.95 E-value=2.8e-28 Score=216.19 Aligned_cols=160 Identities=19% Similarity=0.208 Sum_probs=119.4
Q ss_pred EeeEEEEECCc----cccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccc--cccCCCeEEEEcCC-------ccc
Q 019702 97 IVGLTCRVGRA----VSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVL--SDEFQKRVVIVDTS-------NEI 163 (337)
Q Consensus 97 i~~l~~r~~~~----~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll--~~~~~~~i~~v~~~-------~ei 163 (337)
+++++++|... ....++++++.+++|++++|+||||||||||+++|+|++ +|. .+.|.+-... ..+
T Consensus 6 ~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~-~G~i~~~g~~~~~~~~~~~i 84 (194)
T cd03213 6 FRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGV-SGEVLINGRPLDKRSFRKII 84 (194)
T ss_pred EEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCC-ceEEEECCEeCchHhhhheE
Confidence 67899999752 123599999999999999999999999999999999999 776 3444332111 011
Q ss_pred ccCCC----Cccccccc----chhccCCCcchhHHHHHHHHHhhCCcEEEEcCCCCHHHH-------HHHHHHHhcCCeE
Q 019702 164 GGDGD----IPHSAIGT----ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEA-------HACRSIAERGVML 228 (337)
Q Consensus 164 ~~~~~----~~~~~~~~----~~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~~ld~-------~~l~~~~~~G~tv 228 (337)
++... ++...+.. ......+|+||+||+++|+|++.+|+++++|||++++|. +.+.++.++|.|+
T Consensus 85 ~~~~q~~~~~~~~t~~~~i~~~~~~~~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~ti 164 (194)
T cd03213 85 GYVPQDDILHPTLTVRETLMFAAKLRGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTI 164 (194)
T ss_pred EEccCcccCCCCCcHHHHHHHHHHhccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEE
Confidence 11100 11111110 011226899999999999999999999999999999995 3455556668999
Q ss_pred EEEEcCcc-hhHHhhchHHHHHhcCceEEEec
Q 019702 229 IGTAHGEW-LENIIKNPILSDLIGGVDTVTLG 259 (337)
Q Consensus 229 i~t~H~~~-~~~~~~d~v~~~ll~~G~iv~~g 259 (337)
|++||+.+ .+..+||+++ ++++|+++..|
T Consensus 165 ii~sh~~~~~~~~~~d~v~--~l~~G~i~~~~ 194 (194)
T cd03213 165 ICSIHQPSSEIFELFDKLL--LLSQGRVIYFG 194 (194)
T ss_pred EEEecCchHHHHHhcCEEE--EEeCCEEEecC
Confidence 99999996 6778999999 99999987653
No 121
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.95 E-value=2.5e-28 Score=213.55 Aligned_cols=157 Identities=14% Similarity=0.149 Sum_probs=117.0
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEcCCc---------ccccCC
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSN---------EIGGDG 167 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~~~~---------ei~~~~ 167 (337)
+++++++|.......++++++.+++|++++|+||||||||||+++|+|+++|. .+.+.+-.... .+++..
T Consensus 3 ~~~~~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~-~G~i~~~g~~~~~~~~~~~~~i~~~~ 81 (178)
T cd03247 3 INNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQ-QGEITLDGVPVSDLEKALSSLISVLN 81 (178)
T ss_pred EEEEEEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC-CCEEEECCEEHHHHHHHHHhhEEEEc
Confidence 56899999754223599999999999999999999999999999999999887 34444321110 011110
Q ss_pred CCc---ccccccchhccCCCcchhHHHHHHHHHhhCCcEEEEcCCCCHHHHH-------HHHHHHhcCCeEEEEEcCcch
Q 019702 168 DIP---HSAIGTARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAH-------ACRSIAERGVMLIGTAHGEWL 237 (337)
Q Consensus 168 ~~~---~~~~~~~~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~~ld~~-------~l~~~~~~G~tvi~t~H~~~~ 237 (337)
.-+ ...+.. .....+|+||+||++||+|++.+|+++++|||++++|.. .+.++. ++.|+|++||+.++
T Consensus 82 q~~~~~~~tv~~-~i~~~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~ 159 (178)
T cd03247 82 QRPYLFDTTLRN-NLGRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVL-KDKTLIWITHHLTG 159 (178)
T ss_pred cCCeeecccHHH-hhcccCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH
Confidence 000 000000 015568999999999999999999999999999999953 333443 48899999999998
Q ss_pred hHHhhchHHHHHhcCceEEEec
Q 019702 238 ENIIKNPILSDLIGGVDTVTLG 259 (337)
Q Consensus 238 ~~~~~d~v~~~ll~~G~iv~~g 259 (337)
.. .||+++ ++++|++++.|
T Consensus 160 ~~-~~d~~~--~l~~g~i~~~~ 178 (178)
T cd03247 160 IE-HMDKIL--FLENGKIIMQG 178 (178)
T ss_pred HH-hCCEEE--EEECCEEEecC
Confidence 86 699999 89999988653
No 122
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.95 E-value=1.2e-28 Score=220.87 Aligned_cols=155 Identities=17% Similarity=0.230 Sum_probs=115.4
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeE-------------------EEE
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRV-------------------VIV 157 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i-------------------~~v 157 (337)
+++++++|+......++++++.+++|++++|+||||||||||+++|+|+++|+. +.| .++
T Consensus 2 ~~~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~-G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (211)
T cd03225 2 LKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTS-GEVLVDGKDLTKLSLKELRRKVGLV 80 (211)
T ss_pred ceeEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCC-ceEEECCEEcccCCHHHHHhhceEE
Confidence 568999997621224999999999999999999999999999999999998873 333 333
Q ss_pred cCCccc-ccCCC-------------Ccccc-----------ccc----chhccCCCcchhHHHHHHHHHhhCCcEEEEcC
Q 019702 158 DTSNEI-GGDGD-------------IPHSA-----------IGT----ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDE 208 (337)
Q Consensus 158 ~~~~ei-~~~~~-------------~~~~~-----------~~~----~~~~~~~S~g~k~r~~ia~al~~~P~vlilDE 208 (337)
.+.... ..... ..... ++. .+....+|+||+||++||+|++.+|++||+||
T Consensus 81 ~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDE 160 (211)
T cd03225 81 FQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDE 160 (211)
T ss_pred ecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 333210 00000 00000 000 02334579999999999999999999999999
Q ss_pred CCCHHHH-------HHHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCce
Q 019702 209 IGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVD 254 (337)
Q Consensus 209 p~~~ld~-------~~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~ 254 (337)
||+++|. +.+.+++++|.|||++||+.+++..+||+++ ++++|+
T Consensus 161 Pt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~--~l~~G~ 211 (211)
T cd03225 161 PTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVI--VLEDGK 211 (211)
T ss_pred CcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEE--EEeCCC
Confidence 9999995 3455556668999999999999999999999 887763
No 123
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=5.1e-28 Score=220.14 Aligned_cols=165 Identities=15% Similarity=0.139 Sum_probs=125.7
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCC----------------CeEEEEcCC
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ----------------KRVVIVDTS 160 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~----------------~~i~~v~~~ 160 (337)
+++++++|... ..++++.+.+|++++|+||||||||||+++|+|+++|+.+ ..+.++.+.
T Consensus 4 ~~~l~~~~~~~----~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~ 79 (232)
T PRK10771 4 LTDITWLYHHL----PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQE 79 (232)
T ss_pred EEEEEEEECCc----cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccEEEEecc
Confidence 67999999742 2379999999999999999999999999999999988732 123444433
Q ss_pred cccccC--------CCC-cc---c-----ccc-c----------chhccCCCcchhHHHHHHHHHhhCCcEEEEcCCCCH
Q 019702 161 NEIGGD--------GDI-PH---S-----AIG-T----------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTE 212 (337)
Q Consensus 161 ~ei~~~--------~~~-~~---~-----~~~-~----------~~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~~ 212 (337)
..+... ... +. . .+. . .+....+|+||+||+++|+|++.+|++||+|||+++
T Consensus 80 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~g 159 (232)
T PRK10771 80 NNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSA 159 (232)
T ss_pred cccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 221110 000 00 0 000 0 022335799999999999999999999999999999
Q ss_pred HHH-------HHHHHHHh-cCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHh
Q 019702 213 AEA-------HACRSIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (337)
Q Consensus 213 ld~-------~~l~~~~~-~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~ 267 (337)
+|. +.+.++.+ .|.|+|++||+.+++..+||+++ ++++|+++..|+++++...
T Consensus 160 LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~--~l~~g~i~~~g~~~~~~~~ 220 (232)
T PRK10771 160 LDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSL--VVADGRIAWDGPTDELLSG 220 (232)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEE--EEECCEEEEeCCHHHHHhC
Confidence 995 34555554 48999999999999989999999 9999999999999988753
No 124
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=2.5e-28 Score=225.49 Aligned_cols=161 Identities=16% Similarity=0.143 Sum_probs=121.7
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeE--------------EEEcCCcc
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRV--------------VIVDTSNE 162 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i--------------~~v~~~~e 162 (337)
+++++++|+... .++++++.+++|++++|+||||||||||+++|+|+++|+. +.| .++.+...
T Consensus 4 ~~~l~~~~~~~~--il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~-G~i~~~g~~~~~~~~~~~~v~q~~~ 80 (255)
T PRK11248 4 ISHLYADYGGKP--ALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQH-GSITLDGKPVEGPGAERGVVFQNEG 80 (255)
T ss_pred EEEEEEEeCCee--eEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC-cEEEECCEECCCCCCcEEEEeCCCc
Confidence 678999997644 4999999999999999999999999999999999998873 333 33443322
Q ss_pred cccCCC-------------Cccc----cccc-----------chhccCCCcchhHHHHHHHHHhhCCcEEEEcCCCCHHH
Q 019702 163 IGGDGD-------------IPHS----AIGT-----------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAE 214 (337)
Q Consensus 163 i~~~~~-------------~~~~----~~~~-----------~~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~~ld 214 (337)
+..... .... .+.. .+....+|+||+||+++|+|++.+|++||+||||+++|
T Consensus 81 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD 160 (255)
T PRK11248 81 LLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALD 160 (255)
T ss_pred cCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCC
Confidence 111000 0000 0000 02234579999999999999999999999999999999
Q ss_pred H-------HHHHHHH-hcCCeEEEEEcCcchhHHhhchHHHHHhc--CceEEEecCHH
Q 019702 215 A-------HACRSIA-ERGVMLIGTAHGEWLENIIKNPILSDLIG--GVDTVTLGDEE 262 (337)
Q Consensus 215 ~-------~~l~~~~-~~G~tvi~t~H~~~~~~~~~d~v~~~ll~--~G~iv~~g~~~ 262 (337)
. +.+.++. +.|.|||++||+.+++..+||+++ +++ +|+++..++.+
T Consensus 161 ~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~--~l~~~~G~i~~~~~~~ 216 (255)
T PRK11248 161 AFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELV--LLSPGPGRVVERLPLN 216 (255)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE--EEeCCCcEEEEEecCC
Confidence 5 3345553 358999999999999999999999 887 59998876543
No 125
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=4e-28 Score=220.90 Aligned_cols=166 Identities=17% Similarity=0.182 Sum_probs=127.6
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeE-----------------EEEcC
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRV-----------------VIVDT 159 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i-----------------~~v~~ 159 (337)
+++++++|+...+ ++++++.+++|++++|+||||||||||+++|+|+++|.. +.| .++.+
T Consensus 3 ~~~l~~~~~~~~i--l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~-G~i~~~g~~~~~~~~~~~~i~~~~q 79 (232)
T cd03300 3 LENVSKFYGGFVA--LDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTS-GEILLDGKDITNLPPHKRPVNTVFQ 79 (232)
T ss_pred EEeEEEEeCCeee--eccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCc-eEEEECCEEcCcCChhhcceEEEec
Confidence 6789999976544 999999999999999999999999999999999998873 333 33333
Q ss_pred CcccccCCCCccc-----------------cccc-----------chhccCCCcchhHHHHHHHHHhhCCcEEEEcCCCC
Q 019702 160 SNEIGGDGDIPHS-----------------AIGT-----------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGT 211 (337)
Q Consensus 160 ~~ei~~~~~~~~~-----------------~~~~-----------~~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~ 211 (337)
...+.....+..+ .+.. .+....+|+||+||+++|+|++.+|+++++|||++
T Consensus 80 ~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~ 159 (232)
T cd03300 80 NYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLG 159 (232)
T ss_pred ccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 2211100000000 0000 02233469999999999999999999999999999
Q ss_pred HHHH-------HHHHHHHhc-CCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHh
Q 019702 212 EAEA-------HACRSIAER-GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (337)
Q Consensus 212 ~ld~-------~~l~~~~~~-G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~ 267 (337)
++|. +.+.+++++ |.|||++||+.+++..+||+++ ++++|+++..|++++++..
T Consensus 160 gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~--~l~~G~~~~~~~~~~~~~~ 221 (232)
T cd03300 160 ALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIA--VMNKGKIQQIGTPEEIYEE 221 (232)
T ss_pred cCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEE--EEECCEEEecCCHHHHHhC
Confidence 9995 345555554 8999999999999989999999 9999999999998887653
No 126
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.95 E-value=6.8e-28 Score=206.09 Aligned_cols=164 Identities=13% Similarity=0.165 Sum_probs=125.3
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEcCC----------------
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTS---------------- 160 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~~~---------------- 160 (337)
++++.+.|..... .++..++.|++++|+||+||||||||+.|+|+..|. .+.|.+..+.
T Consensus 4 L~~V~~~y~~~~~----~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~-~G~i~i~g~d~t~~~P~~RPVSmlFQ 78 (231)
T COG3840 4 LDDVRFSYGHLPM----RFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPA-SGEILINGVDHTASPPAERPVSMLFQ 78 (231)
T ss_pred ccceEEeeCcceE----EEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCC-CceEEEcCeecCcCCcccCChhhhhh
Confidence 4578888875543 556778999999999999999999999999999998 4555443221
Q ss_pred -cccccCCCC---------ccccccc-------------------chhccCCCcchhHHHHHHHHHhhCCcEEEEcCCCC
Q 019702 161 -NEIGGDGDI---------PHSAIGT-------------------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGT 211 (337)
Q Consensus 161 -~ei~~~~~~---------~~~~~~~-------------------~~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~ 211 (337)
+.+.....+ |...+.. .+....+||||+||+++||+|..+-.|++||||++
T Consensus 79 EnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~PilLLDEPFs 158 (231)
T COG3840 79 ENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLLDEPFS 158 (231)
T ss_pred ccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCeEEecCchh
Confidence 111000000 1100000 13345679999999999999999999999999999
Q ss_pred HHHHH-------HHHHHH-hcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHh
Q 019702 212 EAEAH-------ACRSIA-ERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (337)
Q Consensus 212 ~ld~~-------~l~~~~-~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~ 267 (337)
.+|.. ++..+. +++.|++++||..+.+..++++++ ++++|+|.+.|+..+.+..
T Consensus 159 ALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~--fl~~Gri~~~g~~~~~~~~ 220 (231)
T COG3840 159 ALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVV--FLDNGRIAAQGSTQELLSG 220 (231)
T ss_pred hcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceE--EEeCCEEEeeccHHHHhcc
Confidence 99952 344554 679999999999999999999999 9999999999999998864
No 127
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=2.7e-28 Score=227.65 Aligned_cols=167 Identities=14% Similarity=0.175 Sum_probs=127.9
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeE---------------------E
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRV---------------------V 155 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i---------------------~ 155 (337)
+++++++|+... ..++++++.+.+|++++|+||||||||||+++|+|+++|+. +.| .
T Consensus 4 ~~~l~~~~~~~~-~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~-G~i~~~g~~~~~~~~~~~~~~~~i~ 81 (275)
T PRK13639 4 TRDLKYSYPDGT-EALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTS-GEVLIKGEPIKYDKKSLLEVRKTVG 81 (275)
T ss_pred EEEEEEEeCCCC-eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc-cEEEECCEECccccchHHHHHhheE
Confidence 678999996322 24999999999999999999999999999999999998763 333 3
Q ss_pred EEcCCcc-cccCCCCccc-----------------ccc-c----------chhccCCCcchhHHHHHHHHHhhCCcEEEE
Q 019702 156 IVDTSNE-IGGDGDIPHS-----------------AIG-T----------ARRMQVPEPSLQHKVMIEAVENHMPEVIIV 206 (337)
Q Consensus 156 ~v~~~~e-i~~~~~~~~~-----------------~~~-~----------~~~~~~~S~g~k~r~~ia~al~~~P~vlil 206 (337)
++.+... ..+...+..+ .+. . .+....+|+||+||+++|+|++.+|++|++
T Consensus 82 ~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~~p~llll 161 (275)
T PRK13639 82 IVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVL 161 (275)
T ss_pred EEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 3333321 0000000000 000 0 022345799999999999999999999999
Q ss_pred cCCCCHHHH-------HHHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHh
Q 019702 207 DEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (337)
Q Consensus 207 DEp~~~ld~-------~~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~ 267 (337)
||||+++|. +.+.++.++|.|||++||+.+.+..+||+++ +|++|++++.|++++++..
T Consensus 162 DEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~--~l~~G~i~~~g~~~~~~~~ 227 (275)
T PRK13639 162 DEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVY--VMSDGKIIKEGTPKEVFSD 227 (275)
T ss_pred eCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEE--EEECCEEEEeCCHHHHhcC
Confidence 999999995 3455555669999999999999989999999 9999999999999998763
No 128
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=3e-28 Score=228.87 Aligned_cols=168 Identities=10% Similarity=0.078 Sum_probs=127.3
Q ss_pred EeeEEEEECCcc---ccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeE-------------------
Q 019702 97 IVGLTCRVGRAV---SGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRV------------------- 154 (337)
Q Consensus 97 i~~l~~r~~~~~---~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i------------------- 154 (337)
+++++++|+... ...++++++.+++|++++|+||||||||||+++|+|+++|+. +.|
T Consensus 9 i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~-G~i~~~g~~i~~~~~~~~~~~~ 87 (289)
T PRK13645 9 LDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISET-GQTIVGDYAIPANLKKIKEVKR 87 (289)
T ss_pred EEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCC-ceEEECCEEccccccccccHHH
Confidence 679999997542 125999999999999999999999999999999999998863 322
Q ss_pred -----EEEcCCcccc-cCC-------------CCcccc----c-------cc-----chhccCCCcchhHHHHHHHHHhh
Q 019702 155 -----VIVDTSNEIG-GDG-------------DIPHSA----I-------GT-----ARRMQVPEPSLQHKVMIEAVENH 199 (337)
Q Consensus 155 -----~~v~~~~ei~-~~~-------------~~~~~~----~-------~~-----~~~~~~~S~g~k~r~~ia~al~~ 199 (337)
.++.+..... +.. ...... + +. .+....+|+||+||++||+|++.
T Consensus 88 ~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~laral~~ 167 (289)
T PRK13645 88 LRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGIIAM 167 (289)
T ss_pred HhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHh
Confidence 3333321100 000 000000 0 00 01234579999999999999999
Q ss_pred CCcEEEEcCCCCHHHHH-------HHHHHHh-cCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHh
Q 019702 200 MPEVIIVDEIGTEAEAH-------ACRSIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (337)
Q Consensus 200 ~P~vlilDEp~~~ld~~-------~l~~~~~-~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~ 267 (337)
+|++|||||||+++|.. .+.++.+ .|.|||++||+.+++..+||+++ ++++|+++..|+++++++.
T Consensus 168 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~--~l~~G~i~~~g~~~~~~~~ 241 (289)
T PRK13645 168 DGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVI--VMHEGKVISIGSPFEIFSN 241 (289)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEE--EEECCEEEEeCCHHHHhcC
Confidence 99999999999999953 3455554 48999999999999989999999 9999999999999988764
No 129
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=2.8e-28 Score=227.97 Aligned_cols=167 Identities=19% Similarity=0.254 Sum_probs=127.5
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCe-------------------EEEE
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKR-------------------VVIV 157 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~-------------------i~~v 157 (337)
+++++++|+......++++++.+.+|++++|+||||||||||+++|+|+++|+. +. +.++
T Consensus 8 ~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~-G~i~~~g~~i~~~~~~~~~~~i~~~ 86 (279)
T PRK13635 8 VEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEA-GTITVGGMVLSEETVWDVRRQVGMV 86 (279)
T ss_pred EEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCC-cEEEECCEECCcCcHHHHhhheEEE
Confidence 679999997432235999999999999999999999999999999999999873 33 3344
Q ss_pred cCCcc-cccCCC-------------Ccccc----c-------c----cchhccCCCcchhHHHHHHHHHhhCCcEEEEcC
Q 019702 158 DTSNE-IGGDGD-------------IPHSA----I-------G----TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDE 208 (337)
Q Consensus 158 ~~~~e-i~~~~~-------------~~~~~----~-------~----~~~~~~~~S~g~k~r~~ia~al~~~P~vlilDE 208 (337)
.+... ...... .+... + + ..+....+|+||+||++||+|++.+|++||+||
T Consensus 87 ~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDE 166 (279)
T PRK13635 87 FQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDE 166 (279)
T ss_pred EeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 33321 000000 00000 0 0 002334579999999999999999999999999
Q ss_pred CCCHHHH-------HHHHHHHhc-CCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHh
Q 019702 209 IGTEAEA-------HACRSIAER-GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (337)
Q Consensus 209 p~~~ld~-------~~l~~~~~~-G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~ 267 (337)
||+++|. +.+.++.++ |.|||++||+++.+. .||+++ ++++|++++.|++++++..
T Consensus 167 Pt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~-~~d~i~--~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13635 167 ATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAA-QADRVI--VMNKGEILEEGTPEEIFKS 230 (279)
T ss_pred CcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH-cCCEEE--EEECCEEEEECCHHHHhcC
Confidence 9999995 345556655 899999999999886 599999 9999999999999988764
No 130
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.95 E-value=3.1e-28 Score=222.74 Aligned_cols=164 Identities=14% Similarity=0.127 Sum_probs=125.5
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCe--------------------EEE
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKR--------------------VVI 156 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~--------------------i~~ 156 (337)
+++++++|+... .++++++.+.+|++++|+||||||||||+++|+|+++|+. +. +.+
T Consensus 5 ~~~l~~~~~~~~--~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~-G~i~~~g~~~~~~~~~~~~~~~i~~ 81 (242)
T TIGR03411 5 LEGLSVSFDGFK--ALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDE-GSVLFGGTDLTGLPEHQIARAGIGR 81 (242)
T ss_pred EEeeEEEcCCeE--EeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCC-CeEEECCeecCCCCHHHHHhcCeeE
Confidence 678999997644 4999999999999999999999999999999999998873 22 333
Q ss_pred EcCCcccccCCCCcc---------------------c----cc-------cc----chhccCCCcchhHHHHHHHHHhhC
Q 019702 157 VDTSNEIGGDGDIPH---------------------S----AI-------GT----ARRMQVPEPSLQHKVMIEAVENHM 200 (337)
Q Consensus 157 v~~~~ei~~~~~~~~---------------------~----~~-------~~----~~~~~~~S~g~k~r~~ia~al~~~ 200 (337)
+.+...+.....+.. . .+ +. ......+|+||+||+++|+|++.+
T Consensus 82 ~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~laral~~~ 161 (242)
T TIGR03411 82 KFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLMQD 161 (242)
T ss_pred eccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 333221110000000 0 00 00 022334799999999999999999
Q ss_pred CcEEEEcCCCCHHHHH-------HHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHH
Q 019702 201 PEVIIVDEIGTEAEAH-------ACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (337)
Q Consensus 201 P~vlilDEp~~~ld~~-------~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~ 266 (337)
|++|++||||+++|.. .+.++.+ +.|+|++||+.+++..+||+++ ++++|+++..|+++++..
T Consensus 162 p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~~~~~~~d~i~--~l~~g~~~~~~~~~~~~~ 231 (242)
T TIGR03411 162 PKLLLLDEPVAGMTDEETEKTAELLKSLAG-KHSVVVVEHDMEFVRSIADKVT--VLHQGSVLAEGSLDQVQA 231 (242)
T ss_pred CCEEEecCCccCCCHHHHHHHHHHHHHHhc-CCEEEEEECCHHHHHHhCCEEE--EEECCeEEeeCCHHHHhc
Confidence 9999999999999953 3444444 7899999999999999999999 999999999999988764
No 131
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.95 E-value=3.1e-28 Score=234.96 Aligned_cols=163 Identities=14% Similarity=0.095 Sum_probs=124.6
Q ss_pred eEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeE-----------------------E
Q 019702 99 GLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRV-----------------------V 155 (337)
Q Consensus 99 ~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i-----------------------~ 155 (337)
+++++|+... + ++++.+++|++++|+|||||||||||++|+|+++|+. +.| .
T Consensus 4 ~l~~~~~~~~---~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~-G~I~~~g~~i~~~~~~~~~~~~~~~i~ 78 (354)
T TIGR02142 4 RFSKRLGDFS---L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDE-GEIVLNGRTLFDSRKGIFLPPEKRRIG 78 (354)
T ss_pred EEEEEECCEE---E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCc-eEEEECCEECccCccccccchhhCCeE
Confidence 7889997533 4 7999999999999999999999999999999998863 333 2
Q ss_pred EEcCCcccccCCCCccc-----------c----ccc-----------chhccCCCcchhHHHHHHHHHhhCCcEEEEcCC
Q 019702 156 IVDTSNEIGGDGDIPHS-----------A----IGT-----------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEI 209 (337)
Q Consensus 156 ~v~~~~ei~~~~~~~~~-----------~----~~~-----------~~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp 209 (337)
++.+...+.....+.++ . +.. .+....+|+||+||++||+|++.+|++|+||||
T Consensus 79 ~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~lllLDEP 158 (354)
T TIGR02142 79 YVFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEP 158 (354)
T ss_pred EEecCCccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 33322211100000000 0 000 022334799999999999999999999999999
Q ss_pred CCHHHH-------HHHHHHHhc-CCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHhh
Q 019702 210 GTEAEA-------HACRSIAER-GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARRC 268 (337)
Q Consensus 210 ~~~ld~-------~~l~~~~~~-G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~~ 268 (337)
|+++|. +.+.+++++ |.|+|++||+.+++..+||+++ +|++|+++..|++++++..+
T Consensus 159 ts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~--~l~~G~i~~~g~~~~~~~~~ 223 (354)
T TIGR02142 159 LAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVV--VLEDGRVAAAGPIAEVWASP 223 (354)
T ss_pred CcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEE--EEeCCEEEEECCHHHHhcCc
Confidence 999995 345556554 8999999999999999999999 99999999999999988653
No 132
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.95 E-value=2.1e-28 Score=214.47 Aligned_cols=157 Identities=16% Similarity=0.283 Sum_probs=120.2
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEcCCc-cc-----c-cCCCC
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSN-EI-----G-GDGDI 169 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~~~~-ei-----~-~~~~~ 169 (337)
+++++++|+... .++++++.+.+|++++|+||||||||||+++|+|+++|+ .+.|.+-.... .. . ....+
T Consensus 2 ~~~l~~~~~~~~--~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~-~G~v~~~g~~~~~~~~~~~~~~i~~~ 78 (180)
T cd03214 2 VENLSVGYGGRT--VLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPS-SGEILLDGKDLASLSPKELARKIAYV 78 (180)
T ss_pred eeEEEEEECCee--eEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CcEEEECCEECCcCCHHHHHHHHhHH
Confidence 568999997644 499999999999999999999999999999999999887 45554422111 00 0 00000
Q ss_pred cc--cccc----cchhccCCCcchhHHHHHHHHHhhCCcEEEEcCCCCHHHH-------HHHHHHHhc-CCeEEEEEcCc
Q 019702 170 PH--SAIG----TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEA-------HACRSIAER-GVMLIGTAHGE 235 (337)
Q Consensus 170 ~~--~~~~----~~~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~~ld~-------~~l~~~~~~-G~tvi~t~H~~ 235 (337)
++ ..++ .......+|+||+||+++|+|++.+|+++++||||+++|. +.+.+++++ |.|+|++||+.
T Consensus 79 ~q~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~ 158 (180)
T cd03214 79 PQALELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDL 158 (180)
T ss_pred HHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 10 0000 0133556899999999999999999999999999999994 344555555 88999999999
Q ss_pred chhHHhhchHHHHHhcCceEEEe
Q 019702 236 WLENIIKNPILSDLIGGVDTVTL 258 (337)
Q Consensus 236 ~~~~~~~d~v~~~ll~~G~iv~~ 258 (337)
+++..+||+++ ++++|+++..
T Consensus 159 ~~~~~~~d~~~--~l~~g~i~~~ 179 (180)
T cd03214 159 NLAARYADRVI--LLKDGRIVAQ 179 (180)
T ss_pred HHHHHhCCEEE--EEECCEEEec
Confidence 99989999999 8999998754
No 133
>PRK10908 cell division protein FtsE; Provisional
Probab=99.95 E-value=2.6e-28 Score=220.59 Aligned_cols=156 Identities=14% Similarity=0.135 Sum_probs=118.1
Q ss_pred EeeEEEEE-CCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeE---------------------
Q 019702 97 IVGLTCRV-GRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRV--------------------- 154 (337)
Q Consensus 97 i~~l~~r~-~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i--------------------- 154 (337)
+++++++| .... .++++++.+++|++++|+||||||||||+++|+|+++|+. +.|
T Consensus 4 ~~~l~~~~~~~~~--~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~-G~i~~~g~~i~~~~~~~~~~~~~~ 80 (222)
T PRK10908 4 FEHVSKAYLGGRQ--ALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSA-GKIWFSGHDITRLKNREVPFLRRQ 80 (222)
T ss_pred EEeeEEEecCCCe--EEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc-eEEEECCEEcccCChhHHHHHHhh
Confidence 56899999 4433 4999999999999999999999999999999999998873 333
Q ss_pred -EEEcCCcccccCCC-------------Ccccc----cc-c----------chhccCCCcchhHHHHHHHHHhhCCcEEE
Q 019702 155 -VIVDTSNEIGGDGD-------------IPHSA----IG-T----------ARRMQVPEPSLQHKVMIEAVENHMPEVII 205 (337)
Q Consensus 155 -~~v~~~~ei~~~~~-------------~~~~~----~~-~----------~~~~~~~S~g~k~r~~ia~al~~~P~vli 205 (337)
.++.+...+..... ..... +. . .+....+|+||+||+++|+|++.+|++||
T Consensus 81 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lll 160 (222)
T PRK10908 81 IGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLL 160 (222)
T ss_pred eEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcCCCEEE
Confidence 33333222111000 00000 00 0 02234579999999999999999999999
Q ss_pred EcCCCCHHHH-------HHHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEE
Q 019702 206 VDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVT 257 (337)
Q Consensus 206 lDEp~~~ld~-------~~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~ 257 (337)
+||||+++|. +.+.++.+.|.|+|++||+.+++..+||+++ ++++|+++.
T Consensus 161 lDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~--~l~~G~i~~ 217 (222)
T PRK10908 161 ADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRML--TLSDGHLHG 217 (222)
T ss_pred EeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEE--EEECCEEcc
Confidence 9999999995 3455555668999999999999999999999 899998754
No 134
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.95 E-value=3.6e-28 Score=223.98 Aligned_cols=165 Identities=15% Similarity=0.195 Sum_probs=127.2
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCC-------CeEEEEcCCcccccC---
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ-------KRVVIVDTSNEIGGD--- 166 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~-------~~i~~v~~~~ei~~~--- 166 (337)
+++++++|+... .++++++.+++|++++|+||||||||||+++|+|+++|+.+ ..+.++++...+...
T Consensus 7 ~~~l~~~~~~~~--vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~~~i~~v~q~~~~~~~l~~ 84 (251)
T PRK09544 7 LENVSVSFGQRR--VLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQKLYLDTTLPL 84 (251)
T ss_pred EeceEEEECCce--EEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCccCEEEeccccccccccCh
Confidence 668999997654 49999999999999999999999999999999999988743 135566554322110
Q ss_pred ---------CCCcccccc-------c----chhccCCCcchhHHHHHHHHHhhCCcEEEEcCCCCHHHHH-------HHH
Q 019702 167 ---------GDIPHSAIG-------T----ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAH-------ACR 219 (337)
Q Consensus 167 ---------~~~~~~~~~-------~----~~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~~ld~~-------~l~ 219 (337)
.......+. . ......+|+||+||++||+|++.+|++||+||||+++|.. .+.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~ 164 (251)
T PRK09544 85 TVNRFLRLRPGTKKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLID 164 (251)
T ss_pred hHHHHHhccccccHHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHH
Confidence 000000000 0 0234457999999999999999999999999999999953 345
Q ss_pred HHHhc-CCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHH
Q 019702 220 SIAER-GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (337)
Q Consensus 220 ~~~~~-G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~ 266 (337)
++.++ |.|||++||+.+++..+||+++ ++++ +++..|+++++..
T Consensus 165 ~~~~~~g~tiiivsH~~~~i~~~~d~i~--~l~~-~i~~~g~~~~~~~ 209 (251)
T PRK09544 165 QLRRELDCAVLMVSHDLHLVMAKTDEVL--CLNH-HICCSGTPEVVSL 209 (251)
T ss_pred HHHHhcCCEEEEEecCHHHHHHhCCEEE--EECC-ceEeeCCHHHHhC
Confidence 55554 8999999999999999999999 8865 7899999998764
No 135
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.95 E-value=2.4e-28 Score=219.08 Aligned_cols=154 Identities=16% Similarity=0.212 Sum_probs=116.3
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeE---------------------E
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRV---------------------V 155 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i---------------------~ 155 (337)
+++++++|+... .++++++.+.+|++++|+||||||||||+++|+|+++|+. +.+ .
T Consensus 3 ~~~l~~~~~~~~--~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~-G~i~~~g~~~~~~~~~~~~~~~~i~ 79 (213)
T cd03262 3 IKNLHKSFGDFH--VLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDS-GTIIIDGLKLTDDKKNINELRQKVG 79 (213)
T ss_pred EEEEEEEECCeE--eecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC-ceEEECCEECCccchhHHHHHhcce
Confidence 578999997644 4999999999999999999999999999999999998763 333 3
Q ss_pred EEcCCcccccCCC--------------Ccccc----c-------cc----chhccCCCcchhHHHHHHHHHhhCCcEEEE
Q 019702 156 IVDTSNEIGGDGD--------------IPHSA----I-------GT----ARRMQVPEPSLQHKVMIEAVENHMPEVIIV 206 (337)
Q Consensus 156 ~v~~~~ei~~~~~--------------~~~~~----~-------~~----~~~~~~~S~g~k~r~~ia~al~~~P~vlil 206 (337)
++.+...+..... ..... . +. .+....+|+||+||+++|+|++.+|++||+
T Consensus 80 ~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llll 159 (213)
T cd03262 80 MVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLF 159 (213)
T ss_pred EEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcCCCEEEE
Confidence 3333221110000 00000 0 00 022345799999999999999999999999
Q ss_pred cCCCCHHHH-------HHHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceE
Q 019702 207 DEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDT 255 (337)
Q Consensus 207 DEp~~~ld~-------~~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~i 255 (337)
||||+++|. +.+.+++++|.|||++||+.+.+..+||+++ ++++|++
T Consensus 160 DEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~--~l~~g~i 213 (213)
T cd03262 160 DEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVI--FMDDGRI 213 (213)
T ss_pred eCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEE--EEeCCcC
Confidence 999999995 3455556678999999999999999999999 8887763
No 136
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.95 E-value=5.2e-28 Score=215.49 Aligned_cols=161 Identities=18% Similarity=0.161 Sum_probs=121.8
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccc--cccCCCeEEEEcCCc-----------cc
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVL--SDEFQKRVVIVDTSN-----------EI 163 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll--~~~~~~~i~~v~~~~-----------ei 163 (337)
+++++++|+... .++++++.+.+|++++|+||||||||||+++|+|+. .|+ .+.|.+-..+. .+
T Consensus 3 ~~~l~~~~~~~~--~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~-~G~i~~~g~~~~~~~~~~~~~~~i 79 (200)
T cd03217 3 IKDLHVSVGGKE--ILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVT-EGEILFKGEDITDLPPEERARLGI 79 (200)
T ss_pred EEEEEEEeCCEE--eeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCC-ccEEEECCEECCcCCHHHHhhCcE
Confidence 578999997544 499999999999999999999999999999999994 555 34444322110 01
Q ss_pred ccCCC----Cccccccc-chhc-cCCCcchhHHHHHHHHHhhCCcEEEEcCCCCHHHH-------HHHHHHHhcCCeEEE
Q 019702 164 GGDGD----IPHSAIGT-ARRM-QVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEA-------HACRSIAERGVMLIG 230 (337)
Q Consensus 164 ~~~~~----~~~~~~~~-~~~~-~~~S~g~k~r~~ia~al~~~P~vlilDEp~~~ld~-------~~l~~~~~~G~tvi~ 230 (337)
++... ++...... .... ..+|+||+||+++|+|++.+|++|++||||+++|. +.+.++++.|.|+|+
T Consensus 80 ~~v~q~~~~~~~~~~~~~l~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii 159 (200)
T cd03217 80 FLAFQYPPEIPGVKNADFLRYVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLI 159 (200)
T ss_pred EEeecChhhccCccHHHHHhhccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 11100 00000000 1223 46899999999999999999999999999999994 345555566899999
Q ss_pred EEcCcchhHH-hhchHHHHHhcCceEEEecCHH
Q 019702 231 TAHGEWLENI-IKNPILSDLIGGVDTVTLGDEE 262 (337)
Q Consensus 231 t~H~~~~~~~-~~d~v~~~ll~~G~iv~~g~~~ 262 (337)
+||+.+.+.. +||+++ ++++|++++.|+.+
T Consensus 160 ~sh~~~~~~~~~~d~i~--~l~~G~i~~~~~~~ 190 (200)
T cd03217 160 ITHYQRLLDYIKPDRVH--VLYDGRIVKSGDKE 190 (200)
T ss_pred EecCHHHHHHhhCCEEE--EEECCEEEEEccHH
Confidence 9999998887 799999 99999999998444
No 137
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.95 E-value=1.4e-28 Score=212.75 Aligned_cols=165 Identities=19% Similarity=0.259 Sum_probs=132.8
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEcC------Cccc-------
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDT------SNEI------- 163 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~~------~~ei------- 163 (337)
+++++++|+...+ +++++..+++|+++.|+||||+||||||.+++++++.+. +.|.+-.. +.++
T Consensus 4 i~nv~K~y~~~~v--l~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~-G~i~i~g~~~~~~~s~~LAk~lSIL 80 (252)
T COG4604 4 IENVSKSYGTKVV--LDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDS-GEITIDGLELTSTPSKELAKKLSIL 80 (252)
T ss_pred ehhhhHhhCCEEe--eccceeeecCCceeEEECCCCccHHHHHHHHHHhccccC-ceEEEeeeecccCChHHHHHHHHHH
Confidence 5689999998887 999999999999999999999999999999999999873 44433110 0010
Q ss_pred ---------------ccCCCCccccc--------------c-------cchhccCCCcchhHHHHHHHHHhhCCcEEEEc
Q 019702 164 ---------------GGDGDIPHSAI--------------G-------TARRMQVPEPSLQHKVMIEAVENHMPEVIIVD 207 (337)
Q Consensus 164 ---------------~~~~~~~~~~~--------------~-------~~~~~~~~S~g~k~r~~ia~al~~~P~vlilD 207 (337)
...+.+|...- . .-+..+.+||||+||..+|..++++-|+++||
T Consensus 81 kQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQdTdyvlLD 160 (252)
T COG4604 81 KQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLD 160 (252)
T ss_pred HhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeeeccCcEEEec
Confidence 11122332210 0 01345567999999999999999999999999
Q ss_pred CCCCHHHH-------HHHHHHHh-cCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHH
Q 019702 208 EIGTEAEA-------HACRSIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (337)
Q Consensus 208 Ep~~~ld~-------~~l~~~~~-~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~ 266 (337)
||.+++|+ +.++.+++ -|+|++++.||.+++..++|.++ -|.+|+++..|+|+++..
T Consensus 161 EPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IV--AlK~G~vv~~G~~~eii~ 225 (252)
T COG4604 161 EPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIV--ALKNGKVVKQGSPDEIIQ 225 (252)
T ss_pred CcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhhhee--eecCCEEEecCCHHHhcC
Confidence 99999995 45666664 49999999999999999999999 899999999999999986
No 138
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.95 E-value=3.8e-28 Score=225.41 Aligned_cols=168 Identities=15% Similarity=0.170 Sum_probs=127.5
Q ss_pred EeeEEEEECCc-------cccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCC------------------
Q 019702 97 IVGLTCRVGRA-------VSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ------------------ 151 (337)
Q Consensus 97 i~~l~~r~~~~-------~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~------------------ 151 (337)
++++++.|+.. ....++++++.+++|++++|+||||||||||+++|+|+++|+.+
T Consensus 5 ~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 84 (265)
T TIGR02769 5 VRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRR 84 (265)
T ss_pred EEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHHHH
Confidence 66899999631 12359999999999999999999999999999999999988732
Q ss_pred ---CeEEEEcCCcc--cccCC--------------CCccc----c-------ccc-----chhccCCCcchhHHHHHHHH
Q 019702 152 ---KRVVIVDTSNE--IGGDG--------------DIPHS----A-------IGT-----ARRMQVPEPSLQHKVMIEAV 196 (337)
Q Consensus 152 ---~~i~~v~~~~e--i~~~~--------------~~~~~----~-------~~~-----~~~~~~~S~g~k~r~~ia~a 196 (337)
..+.++.+... +.... .+... . ++. ......+|+||+||++||+|
T Consensus 85 ~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~lara 164 (265)
T TIGR02769 85 AFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINIARA 164 (265)
T ss_pred HHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHH
Confidence 12444443321 10000 00000 0 000 01233479999999999999
Q ss_pred HhhCCcEEEEcCCCCHHHH-------HHHHHHHhc-CCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHH
Q 019702 197 ENHMPEVIIVDEIGTEAEA-------HACRSIAER-GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (337)
Q Consensus 197 l~~~P~vlilDEp~~~ld~-------~~l~~~~~~-G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~ 266 (337)
++.+|++||+||||+++|. +.+.++.++ |.|||++||+.+.+..+||+++ ++++|+++..|+++++..
T Consensus 165 l~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~--~l~~G~i~~~g~~~~~~~ 240 (265)
T TIGR02769 165 LAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVA--VMDKGQIVEECDVAQLLS 240 (265)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEE--EEeCCEEEEECCHHHHcC
Confidence 9999999999999999995 345555554 8999999999999999999999 999999999999998875
No 139
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.95 E-value=4.2e-28 Score=224.65 Aligned_cols=164 Identities=16% Similarity=0.206 Sum_probs=126.3
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccC--CCe---------------------
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEF--QKR--------------------- 153 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~--~~~--------------------- 153 (337)
++++++.|+.... ++++++.+.+|++++|+||||||||||+++|+|+++|+. .+.
T Consensus 7 ~~nl~~~~~~~~i--l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 84 (262)
T PRK09984 7 VEKLAKTFNQHQA--LHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKS 84 (262)
T ss_pred EeeEEEEeCCeEE--EecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHHH
Confidence 6789999976544 999999999999999999999999999999999998752 122
Q ss_pred ---EEEEcCCcccccCCCC----------------------ccc---c-------ccc----chhccCCCcchhHHHHHH
Q 019702 154 ---VVIVDTSNEIGGDGDI----------------------PHS---A-------IGT----ARRMQVPEPSLQHKVMIE 194 (337)
Q Consensus 154 ---i~~v~~~~ei~~~~~~----------------------~~~---~-------~~~----~~~~~~~S~g~k~r~~ia 194 (337)
+.++++...+.....+ ... . ++. .+....+|+||+||++||
T Consensus 85 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la 164 (262)
T PRK09984 85 RANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVAIA 164 (262)
T ss_pred HhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCHHHHHHHHHH
Confidence 3444443221110000 000 0 000 022344799999999999
Q ss_pred HHHhhCCcEEEEcCCCCHHHH-------HHHHHHHh-cCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHH
Q 019702 195 AVENHMPEVIIVDEIGTEAEA-------HACRSIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEAR 264 (337)
Q Consensus 195 ~al~~~P~vlilDEp~~~ld~-------~~l~~~~~-~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~ 264 (337)
+|++.+|++||+||||+++|. +.+.++.+ .|.|||++||+.+++..+||+++ ++++|+++..|+++++
T Consensus 165 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~--~l~~g~i~~~g~~~~~ 240 (262)
T PRK09984 165 RALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIV--ALRQGHVFYDGSSQQF 240 (262)
T ss_pred HHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE--EEECCEEEEeCCHHHh
Confidence 999999999999999999995 34555554 48999999999999999999999 9999999999999875
No 140
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=2.6e-28 Score=218.79 Aligned_cols=156 Identities=19% Similarity=0.186 Sum_probs=117.8
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeE------------------EEEc
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRV------------------VIVD 158 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i------------------~~v~ 158 (337)
+++++++|+... .++++++.+++| +++|+||||||||||+++|+|+++|+. +.| .++.
T Consensus 3 ~~~~~~~~~~~~--~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~-G~i~~~g~~~~~~~~~~~~~i~~~~ 78 (211)
T cd03264 3 LENLTKRYGKKR--ALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSS-GTIRIDGQDVLKQPQKLRRRIGYLP 78 (211)
T ss_pred EEEEEEEECCEE--EEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCc-cEEEECCCccccchHHHHhheEEec
Confidence 568999997654 499999999999 999999999999999999999998863 333 3333
Q ss_pred CCcccccCCCCccc-------------c----c-------cc----chhccCCCcchhHHHHHHHHHhhCCcEEEEcCCC
Q 019702 159 TSNEIGGDGDIPHS-------------A----I-------GT----ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIG 210 (337)
Q Consensus 159 ~~~ei~~~~~~~~~-------------~----~-------~~----~~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~ 210 (337)
+...+.....+.++ . + +. ......+|+||+||+++|+|++.+|++|++||||
T Consensus 79 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt 158 (211)
T cd03264 79 QEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPT 158 (211)
T ss_pred CCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 32221110000000 0 0 00 0223347999999999999999999999999999
Q ss_pred CHHHHH-------HHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEec
Q 019702 211 TEAEAH-------ACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLG 259 (337)
Q Consensus 211 ~~ld~~-------~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g 259 (337)
+++|.. .+.++++ +.|+|++||+.+++..+||+++ ++++|++++.|
T Consensus 159 ~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~~~~~~~d~i~--~l~~g~i~~~g 211 (211)
T cd03264 159 AGLDPEERIRFRNLLSELGE-DRIVILSTHIVEDVESLCNQVA--VLNKGKLVFEG 211 (211)
T ss_pred ccCCHHHHHHHHHHHHHHhC-CCEEEEEcCCHHHHHHhCCEEE--EEECCEEEecC
Confidence 999953 3444444 5899999999999988999999 99999988754
No 141
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.95 E-value=5e-28 Score=221.29 Aligned_cols=164 Identities=18% Similarity=0.137 Sum_probs=124.5
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccc--cccCCCe--------------------E
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVL--SDEFQKR--------------------V 154 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll--~~~~~~~--------------------i 154 (337)
+++++++|+... .++++++.+++|++++|+||||||||||+++|+|++ +|+. +. +
T Consensus 3 ~~~l~~~~~~~~--~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~-G~i~~~g~~~~~~~~~~~~~~~i 79 (243)
T TIGR01978 3 IKDLHVSVEDKE--ILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTS-GTILFKGQDLLELEPDERARAGL 79 (243)
T ss_pred EeeEEEEECCEE--EEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCc-ceEEECCEecCCCCHHHhhccce
Confidence 578999997654 499999999999999999999999999999999995 4542 22 3
Q ss_pred EEEcCCcccccC--------------CC------Cccc----cc-------cc-----chhcc-CCCcchhHHHHHHHHH
Q 019702 155 VIVDTSNEIGGD--------------GD------IPHS----AI-------GT-----ARRMQ-VPEPSLQHKVMIEAVE 197 (337)
Q Consensus 155 ~~v~~~~ei~~~--------------~~------~~~~----~~-------~~-----~~~~~-~~S~g~k~r~~ia~al 197 (337)
.++.+...+... .. .... .+ +. .+... .+|+||+||++||+|+
T Consensus 80 ~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~al 159 (243)
T TIGR01978 80 FLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMA 159 (243)
T ss_pred EeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHHHH
Confidence 344333221100 00 0000 00 00 01233 3899999999999999
Q ss_pred hhCCcEEEEcCCCCHHHH-------HHHHHHHhcCCeEEEEEcCcchhHHh-hchHHHHHhcCceEEEecCHHHHH
Q 019702 198 NHMPEVIIVDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENII-KNPILSDLIGGVDTVTLGDEEARA 265 (337)
Q Consensus 198 ~~~P~vlilDEp~~~ld~-------~~l~~~~~~G~tvi~t~H~~~~~~~~-~d~v~~~ll~~G~iv~~g~~~~~~ 265 (337)
+.+|++||+||||+++|. +.+.++.++|.|||++||+.+++..+ ||+++ ++++|+++..|+++++.
T Consensus 160 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~--~l~~G~i~~~g~~~~~~ 233 (243)
T TIGR01978 160 LLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVH--VLLDGRIVKSGDVELAK 233 (243)
T ss_pred hcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEE--EEeCCEEEEecCHHHhc
Confidence 999999999999999994 34555666789999999999999888 89999 99999999999988654
No 142
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.95 E-value=3.2e-28 Score=245.57 Aligned_cols=165 Identities=15% Similarity=0.139 Sum_probs=128.7
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCe--------------------EEE
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKR--------------------VVI 156 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~--------------------i~~ 156 (337)
+++++++|+...+ ++++++.+++|++++|+|||||||||||++|+|+++|+. +. +.+
T Consensus 14 ~~~l~~~~~~~~i--l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~-G~i~~~g~~~~~~~~~~~~~~~i~~ 90 (510)
T PRK15439 14 ARSISKQYSGVEV--LKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDS-GTLEIGGNPCARLTPAKAHQLGIYL 90 (510)
T ss_pred EEeEEEEeCCcee--eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc-eEEEECCEECCCCCHHHHHhCCEEE
Confidence 6799999986544 999999999999999999999999999999999998873 33 334
Q ss_pred EcCCcccccCCCCccc-------------cc-------c----cchhccCCCcchhHHHHHHHHHhhCCcEEEEcCCCCH
Q 019702 157 VDTSNEIGGDGDIPHS-------------AI-------G----TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTE 212 (337)
Q Consensus 157 v~~~~ei~~~~~~~~~-------------~~-------~----~~~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~~ 212 (337)
+.+...+.....+.++ .+ + ..+....+|+||+||++||+||+.+|++||+||||++
T Consensus 91 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLDEPt~~ 170 (510)
T PRK15439 91 VPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPTAS 170 (510)
T ss_pred EeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCCC
Confidence 4333221110000000 00 0 0123446799999999999999999999999999999
Q ss_pred HHH-------HHHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHH
Q 019702 213 AEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (337)
Q Consensus 213 ld~-------~~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~ 266 (337)
+|. +.+.+++++|.|||++||+.+++..+||+++ ++++|+++..|+++++..
T Consensus 171 LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~--~l~~G~i~~~g~~~~~~~ 229 (510)
T PRK15439 171 LTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRIS--VMRDGTIALSGKTADLST 229 (510)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEE--EEECCEEEEecChHHcCH
Confidence 995 3455666679999999999999999999999 999999999999987654
No 143
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=3.7e-28 Score=224.63 Aligned_cols=165 Identities=13% Similarity=0.097 Sum_probs=125.3
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccc-----cCCCe------------------
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSD-----EFQKR------------------ 153 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~-----~~~~~------------------ 153 (337)
+++++++|+... .++++++.+.+|++++|+||||||||||+++|+|+++| + .+.
T Consensus 15 ~~~l~~~~~~~~--il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~-~G~i~~~g~~i~~~~~~~~~~ 91 (258)
T PRK14268 15 VENLNLWYGEKQ--ALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRI-EGKVSIEGEDIYEPDVDVVEL 91 (258)
T ss_pred EeeeEEEeCCee--eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCc-ceEEEECCEEcccccchHHHH
Confidence 668999997544 49999999999999999999999999999999999874 2 232
Q ss_pred ---EEEEcCCcccccC------------CCCcccc-----------ccc--------chhccCCCcchhHHHHHHHHHhh
Q 019702 154 ---VVIVDTSNEIGGD------------GDIPHSA-----------IGT--------ARRMQVPEPSLQHKVMIEAVENH 199 (337)
Q Consensus 154 ---i~~v~~~~ei~~~------------~~~~~~~-----------~~~--------~~~~~~~S~g~k~r~~ia~al~~ 199 (337)
+.++.+...+... ....... ++. .+....+|+||+||++||+|++.
T Consensus 92 ~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~ 171 (258)
T PRK14268 92 RKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLAV 171 (258)
T ss_pred hhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHHHHHHc
Confidence 3333332211100 0000000 000 01233579999999999999999
Q ss_pred CCcEEEEcCCCCHHHH-------HHHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHh
Q 019702 200 MPEVIIVDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (337)
Q Consensus 200 ~P~vlilDEp~~~ld~-------~~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~ 267 (337)
+|++|++||||+++|. +.+.++. +|.|||++||+.+++..+||+++ ++++|+++..|++++++..
T Consensus 172 ~p~llllDEPt~~LD~~~~~~l~~~l~~l~-~~~tiiivsH~~~~~~~~~d~i~--~l~~G~i~~~~~~~~~~~~ 243 (258)
T PRK14268 172 KPKIILFDEPTSALDPISTARIEDLIMNLK-KDYTIVIVTHNMQQAARISDYTG--FFLMGELIEFGQTRQIFHN 243 (258)
T ss_pred CCCEEEEeCCCcccCHHHHHHHHHHHHHHh-hCCEEEEEECCHHHHHHhCCEEE--EEECCEEEEeCCHHHHhcC
Confidence 9999999999999995 3344444 47999999999999989999999 9999999999999988753
No 144
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.95 E-value=4.8e-28 Score=225.01 Aligned_cols=169 Identities=15% Similarity=0.229 Sum_probs=127.2
Q ss_pred EeeEEEEECCc-------cccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCC-----------------
Q 019702 97 IVGLTCRVGRA-------VSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK----------------- 152 (337)
Q Consensus 97 i~~l~~r~~~~-------~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~----------------- 152 (337)
+++++++|+.. ....++++++.+++|++++|+|||||||||||++|+|+++|+.+.
T Consensus 7 ~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 86 (267)
T PRK15112 7 VRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRS 86 (267)
T ss_pred EeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchhhHh
Confidence 67899999631 123599999999999999999999999999999999999887321
Q ss_pred -eEEEEcCCcc--ccc--------------CCCCccc----c-------ccc-----chhccCCCcchhHHHHHHHHHhh
Q 019702 153 -RVVIVDTSNE--IGG--------------DGDIPHS----A-------IGT-----ARRMQVPEPSLQHKVMIEAVENH 199 (337)
Q Consensus 153 -~i~~v~~~~e--i~~--------------~~~~~~~----~-------~~~-----~~~~~~~S~g~k~r~~ia~al~~ 199 (337)
.+.++++... +.. ...+... . ++. ......+|+||+||++||+|++.
T Consensus 87 ~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~ 166 (267)
T PRK15112 87 QRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLARALIL 166 (267)
T ss_pred ccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHHHHHHh
Confidence 2334433321 000 0000000 0 000 01224579999999999999999
Q ss_pred CCcEEEEcCCCCHHHHH-------HHHHHHhc-CCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHh
Q 019702 200 MPEVIIVDEIGTEAEAH-------ACRSIAER-GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (337)
Q Consensus 200 ~P~vlilDEp~~~ld~~-------~l~~~~~~-G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~ 267 (337)
+|++|||||||+++|.. .+.++.++ |.|||++||+.+.+..+||+++ ++++|+++..|+++++...
T Consensus 167 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~--~l~~G~i~~~~~~~~~~~~ 240 (267)
T PRK15112 167 RPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVL--VMHQGEVVERGSTADVLAS 240 (267)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEE--EEECCEEEecCCHHHHhcC
Confidence 99999999999999953 45555544 8999999999999999999999 9999999999999887653
No 145
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=5.5e-28 Score=222.27 Aligned_cols=166 Identities=16% Similarity=0.145 Sum_probs=126.3
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHcccccc----CCC-------------------e
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDE----FQK-------------------R 153 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~----~~~-------------------~ 153 (337)
+++++++|+... .++++++.+++|++++|+||||||||||+++|+|+++|. ..+ .
T Consensus 6 ~~~l~~~~~~~~--~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~ 83 (250)
T PRK14247 6 IRDLKVSFGQVE--VLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRR 83 (250)
T ss_pred EEeeEEEECCee--eeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhcc
Confidence 678999997654 499999999999999999999999999999999998741 122 2
Q ss_pred EEEEcCCcccccCCCC---------------ccc----c-------ccc--------chhccCCCcchhHHHHHHHHHhh
Q 019702 154 VVIVDTSNEIGGDGDI---------------PHS----A-------IGT--------ARRMQVPEPSLQHKVMIEAVENH 199 (337)
Q Consensus 154 i~~v~~~~ei~~~~~~---------------~~~----~-------~~~--------~~~~~~~S~g~k~r~~ia~al~~ 199 (337)
+.++.+...+.....+ ... . ++. ......+|+||+||+++|+|++.
T Consensus 84 i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~ 163 (250)
T PRK14247 84 VQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAF 163 (250)
T ss_pred EEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHHHhc
Confidence 4444443221110000 000 0 000 01234579999999999999999
Q ss_pred CCcEEEEcCCCCHHHHH-------HHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHh
Q 019702 200 MPEVIIVDEIGTEAEAH-------ACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (337)
Q Consensus 200 ~P~vlilDEp~~~ld~~-------~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~ 267 (337)
+|++|++||||+++|.. .+.++. +|.|+|++||+.+++..+||+++ ++++|+++..|++++++..
T Consensus 164 ~p~lllLDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~sH~~~~~~~~~d~i~--~l~~G~i~~~g~~~~~~~~ 235 (250)
T PRK14247 164 QPEVLLADEPTANLDPENTAKIESLFLELK-KDMTIVLVTHFPQQAARISDYVA--FLYKGQIVEWGPTREVFTN 235 (250)
T ss_pred CCCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhcCEEE--EEECCeEEEECCHHHHHcC
Confidence 99999999999999953 344443 47999999999999889999999 9999999999999988754
No 146
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.95 E-value=6.4e-28 Score=222.96 Aligned_cols=166 Identities=17% Similarity=0.175 Sum_probs=127.0
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeE----------------------
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRV---------------------- 154 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i---------------------- 154 (337)
+++++++|+... .++++++.+.+|++++|+||||||||||+++|+|+++|+. +.|
T Consensus 9 ~~~l~~~~~~~~--il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~-G~i~~~g~~~~~~~i~~~~~~~~~~ 85 (258)
T PRK11701 9 VRGLTKLYGPRK--GCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDA-GEVHYRMRDGQLRDLYALSEAERRR 85 (258)
T ss_pred EeeeEEEcCCce--eeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCC-CEEEECCccccccccccCCHHHHHH
Confidence 678999997644 4999999999999999999999999999999999998863 333
Q ss_pred ------EEEcCCcccccC--C-------------CC-cccc-----------ccc-----chhccCCCcchhHHHHHHHH
Q 019702 155 ------VIVDTSNEIGGD--G-------------DI-PHSA-----------IGT-----ARRMQVPEPSLQHKVMIEAV 196 (337)
Q Consensus 155 ------~~v~~~~ei~~~--~-------------~~-~~~~-----------~~~-----~~~~~~~S~g~k~r~~ia~a 196 (337)
.++.+....... . .. .... ++. .+....+|+||+||++||+|
T Consensus 86 ~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~lara 165 (258)
T PRK11701 86 LLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIARN 165 (258)
T ss_pred HhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHHHHHH
Confidence 333332210000 0 00 0000 000 02234579999999999999
Q ss_pred HhhCCcEEEEcCCCCHHHHH-------HHHHHHhc-CCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHh
Q 019702 197 ENHMPEVIIVDEIGTEAEAH-------ACRSIAER-GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (337)
Q Consensus 197 l~~~P~vlilDEp~~~ld~~-------~l~~~~~~-G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~ 267 (337)
++.+|++||+||||+++|.. .+..+.++ |.|||++||+.+++..+||+++ ++++|+++..|++++++..
T Consensus 166 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~--~l~~g~i~~~~~~~~~~~~ 242 (258)
T PRK11701 166 LVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLL--VMKQGRVVESGLTDQVLDD 242 (258)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEE--EEECCEEEEeCCHHHHhcC
Confidence 99999999999999999953 34455544 8999999999999999999999 9999999999999987653
No 147
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.95 E-value=7.6e-28 Score=221.68 Aligned_cols=166 Identities=17% Similarity=0.190 Sum_probs=125.8
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEE--------------------
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVI-------------------- 156 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~-------------------- 156 (337)
+++++++|+.... ++++++.+++|++++|+||||||||||+++|+|+++|+. +.|.+
T Consensus 6 ~~~l~~~~~~~~~--l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~-G~i~~~g~~~~~~~~~~~~~~~~~~ 82 (253)
T TIGR02323 6 VSGLSKSYGGGKG--CRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDH-GTATYIMRSGAELELYQLSEAERRR 82 (253)
T ss_pred EeeeEEEeCCceE--eecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCC-cEEEEecccccccccccCCHHHHHH
Confidence 6789999976544 899999999999999999999999999999999998863 33332
Q ss_pred --------EcCCcccccCCCCc--cc--------------c-----------ccc-----chhccCCCcchhHHHHHHHH
Q 019702 157 --------VDTSNEIGGDGDIP--HS--------------A-----------IGT-----ARRMQVPEPSLQHKVMIEAV 196 (337)
Q Consensus 157 --------v~~~~ei~~~~~~~--~~--------------~-----------~~~-----~~~~~~~S~g~k~r~~ia~a 196 (337)
+.+........... .+ . ++. ......+|+||+||++||+|
T Consensus 83 ~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~lara 162 (253)
T TIGR02323 83 LMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIARN 162 (253)
T ss_pred hhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHHHHHH
Confidence 22211000000000 00 0 000 01223479999999999999
Q ss_pred HhhCCcEEEEcCCCCHHHH-------HHHHHHHh-cCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHh
Q 019702 197 ENHMPEVIIVDEIGTEAEA-------HACRSIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (337)
Q Consensus 197 l~~~P~vlilDEp~~~ld~-------~~l~~~~~-~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~ 267 (337)
++.+|++|++|||++++|. +.+.++.+ .|.|+|++||+.+++..+||+++ ++++|+++..|+++++...
T Consensus 163 l~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~--~l~~G~i~~~~~~~~~~~~ 239 (253)
T TIGR02323 163 LVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLL--VMQQGRVVESGLTDQVLDD 239 (253)
T ss_pred HhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEE--EEECCEEEEECCHHHHhcC
Confidence 9999999999999999995 33445544 48999999999999988999999 9999999999999887653
No 148
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.95 E-value=5.3e-28 Score=222.70 Aligned_cols=165 Identities=15% Similarity=0.136 Sum_probs=124.8
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHcccc-----ccCCCe------------------
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLS-----DEFQKR------------------ 153 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~-----~~~~~~------------------ 153 (337)
+++++++|+... .++++++.+++|++++|+||||||||||+++|+|++. |+ .+.
T Consensus 9 ~~~l~~~~~~~~--il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~-~G~i~~~g~~i~~~~~~~~~~ 85 (253)
T PRK14242 9 ARGLSFFYGDFQ--ALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARV-EGEILLDGENIYDPHVDVVEL 85 (253)
T ss_pred EeeeEEEECCee--eecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCC-ceEEEECCEEccccccCHHHH
Confidence 668999997544 4999999999999999999999999999999999864 23 222
Q ss_pred ---EEEEcCCcccccC------------CCC-ccc----c-------ccc--------chhccCCCcchhHHHHHHHHHh
Q 019702 154 ---VVIVDTSNEIGGD------------GDI-PHS----A-------IGT--------ARRMQVPEPSLQHKVMIEAVEN 198 (337)
Q Consensus 154 ---i~~v~~~~ei~~~------------~~~-~~~----~-------~~~--------~~~~~~~S~g~k~r~~ia~al~ 198 (337)
+.++.+...+... ... ... . ++. .+....+|+||+||++||+|++
T Consensus 86 ~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~ 165 (253)
T PRK14242 86 RRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARALA 165 (253)
T ss_pred hhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHh
Confidence 3444333211100 000 000 0 000 0123457999999999999999
Q ss_pred hCCcEEEEcCCCCHHHH-------HHHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHh
Q 019702 199 HMPEVIIVDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (337)
Q Consensus 199 ~~P~vlilDEp~~~ld~-------~~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~ 267 (337)
.+|++||+||||+++|. +.+.++. +|.|||++||+.+++..+||+++ ++++|+++..|++++++..
T Consensus 166 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tvii~tH~~~~~~~~~d~v~--~l~~G~i~~~g~~~~~~~~ 238 (253)
T PRK14242 166 VEPEVLLMDEPASALDPIATQKIEELIHELK-ARYTIIIVTHNMQQAARVSDVTA--FFYMGKLIEVGPTEQIFTR 238 (253)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-cCCeEEEEEecHHHHHHhCCEEE--EEECCEEEEeCCHHHHHcC
Confidence 99999999999999995 3344443 47899999999999999999999 9999999999999887653
No 149
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.95 E-value=1.6e-28 Score=237.98 Aligned_cols=165 Identities=14% Similarity=0.132 Sum_probs=124.4
Q ss_pred eEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEE----------------------
Q 019702 99 GLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVI---------------------- 156 (337)
Q Consensus 99 ~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~---------------------- 156 (337)
.+.++|+.... ++++++.+++|++++|+||||||||||+++|+|+++|+ .+.|.+
T Consensus 29 ~~~~~~g~~~~--l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~-~G~I~idG~~~~~~i~~~~~~~l~~~r~ 105 (382)
T TIGR03415 29 EILDETGLVVG--VANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVS-RGSVLVKDGDGSIDVANCDAATLRRLRT 105 (382)
T ss_pred HHHHhhCCEEE--EEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-CcEEEECCEecccccccCCHHHHHHHhc
Confidence 45556655544 88999999999999999999999999999999999987 344433
Q ss_pred -----EcCCcccccCCCCccccc-c-----------------cc----------hhccCCCcchhHHHHHHHHHhhCCcE
Q 019702 157 -----VDTSNEIGGDGDIPHSAI-G-----------------TA----------RRMQVPEPSLQHKVMIEAVENHMPEV 203 (337)
Q Consensus 157 -----v~~~~ei~~~~~~~~~~~-~-----------------~~----------~~~~~~S~g~k~r~~ia~al~~~P~v 203 (337)
+.+...+.....+.++.. + .+ .....+|+||+||++||+||+.+|++
T Consensus 106 ~~i~~vfQ~~~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~I 185 (382)
T TIGR03415 106 HRVSMVFQKFALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDADI 185 (382)
T ss_pred CCEEEEECCCcCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 222111100000000000 0 00 12234699999999999999999999
Q ss_pred EEEcCCCCHHHH-------HHHHHHHh-cCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHhh
Q 019702 204 IIVDEIGTEAEA-------HACRSIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARRC 268 (337)
Q Consensus 204 lilDEp~~~ld~-------~~l~~~~~-~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~~ 268 (337)
||+|||++++|. +.+.++.+ .|.|+|++||+++++..+||+++ +|++|+++..|++++++..+
T Consensus 186 LLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~--vl~~G~iv~~g~~~ei~~~p 256 (382)
T TIGR03415 186 LLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIA--IMEGGRIIQHGTPEEIVLNP 256 (382)
T ss_pred EEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE--EEECCEEEEecCHHHHhhCc
Confidence 999999999995 34555555 48999999999999999999999 99999999999999987653
No 150
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=5.8e-28 Score=222.67 Aligned_cols=166 Identities=11% Similarity=0.048 Sum_probs=126.3
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHcccccc----CCCe-------------------
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDE----FQKR------------------- 153 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~----~~~~------------------- 153 (337)
+++++++|+... .++++++.+++|++++|+||||||||||+++|+|+++|+ ..+.
T Consensus 10 ~~~l~~~~~~~~--il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~ 87 (254)
T PRK14273 10 TENLNLFYTDFK--ALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELR 87 (254)
T ss_pred EeeeEEEeCCce--eecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHHHh
Confidence 678999997644 499999999999999999999999999999999999863 1233
Q ss_pred --EEEEcCCcccccC------------CCC-ccc----cc-------c--------cchhccCCCcchhHHHHHHHHHhh
Q 019702 154 --VVIVDTSNEIGGD------------GDI-PHS----AI-------G--------TARRMQVPEPSLQHKVMIEAVENH 199 (337)
Q Consensus 154 --i~~v~~~~ei~~~------------~~~-~~~----~~-------~--------~~~~~~~~S~g~k~r~~ia~al~~ 199 (337)
+.++.+...+... ... ... .+ + .......+|+||+||++||+|++.
T Consensus 88 ~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~laral~~ 167 (254)
T PRK14273 88 RKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLAI 167 (254)
T ss_pred hceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHHHHHHc
Confidence 3333332211100 000 000 00 0 011234579999999999999999
Q ss_pred CCcEEEEcCCCCHHHH-------HHHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHh
Q 019702 200 MPEVIIVDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (337)
Q Consensus 200 ~P~vlilDEp~~~ld~-------~~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~ 267 (337)
+|++||+||||+++|. +.+.++. ++.|+|++||+.+++..+||+++ ++++|+++..|++++++..
T Consensus 168 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tvii~sH~~~~~~~~~d~i~--~l~~G~i~~~g~~~~~~~~ 239 (254)
T PRK14273 168 EPNVILMDEPTSALDPISTGKIEELIINLK-ESYTIIIVTHNMQQAGRISDRTA--FFLNGCIEEESSTDELFFN 239 (254)
T ss_pred CCCEEEEeCCCcccCHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEE--EEECCEEEEeCCHHHHHhC
Confidence 9999999999999995 3455554 47899999999999989999999 9999999999999988753
No 151
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.95 E-value=2.6e-28 Score=219.02 Aligned_cols=154 Identities=16% Similarity=0.234 Sum_probs=115.2
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeE----------------------
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRV---------------------- 154 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i---------------------- 154 (337)
+++++++|.... ..++++++.+++|++++|+||||||||||+++|+|+++|+. +.|
T Consensus 3 ~~~l~~~~~~~~-~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~-G~i~~~g~~i~~~~~~~~~~~~~~i 80 (214)
T cd03292 3 FINVTKTYPNGT-AALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTS-GTIRVNGQDVSDLRGRAIPYLRRKI 80 (214)
T ss_pred EEEEEEEeCCCc-eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCc-eEEEECCEEcccCCHHHHHHHHHhe
Confidence 568999996431 24999999999999999999999999999999999998863 333
Q ss_pred EEEcCCcccccCCCC-------------cccc----c-------cc----chhccCCCcchhHHHHHHHHHhhCCcEEEE
Q 019702 155 VIVDTSNEIGGDGDI-------------PHSA----I-------GT----ARRMQVPEPSLQHKVMIEAVENHMPEVIIV 206 (337)
Q Consensus 155 ~~v~~~~ei~~~~~~-------------~~~~----~-------~~----~~~~~~~S~g~k~r~~ia~al~~~P~vlil 206 (337)
.++.+...+.....+ .... + +. .+....+|+||+||++||+|++.+|+++++
T Consensus 81 ~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llll 160 (214)
T cd03292 81 GVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIA 160 (214)
T ss_pred EEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHcCCCEEEE
Confidence 333332211110000 0000 0 00 012344799999999999999999999999
Q ss_pred cCCCCHHHH-------HHHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCce
Q 019702 207 DEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVD 254 (337)
Q Consensus 207 DEp~~~ld~-------~~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~ 254 (337)
||||+++|. +.+.++.++|.|+|++||+.+.+..+||+++ ++++|+
T Consensus 161 DEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~--~l~~G~ 213 (214)
T cd03292 161 DEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVI--ALERGK 213 (214)
T ss_pred eCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEE--EEeCCc
Confidence 999999994 3455555668999999999999988999999 888776
No 152
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=6.7e-28 Score=216.14 Aligned_cols=157 Identities=15% Similarity=0.147 Sum_probs=118.1
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCC----------------eEEEEcCC
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK----------------RVVIVDTS 160 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~----------------~i~~v~~~ 160 (337)
+++++++|+... .++++.+.+|++++|+||||||||||+++|+|+++|+.+. .+.++.+.
T Consensus 3 ~~~l~~~~~~~~----~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~ 78 (211)
T cd03298 3 LDKIRFSYGEQP----MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQE 78 (211)
T ss_pred EEeEEEEeCCEe----cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEEEEecc
Confidence 568999997532 2899999999999999999999999999999999887321 24444443
Q ss_pred cccccC---------CCCcc-----c---cccc-----------chhccCCCcchhHHHHHHHHHhhCCcEEEEcCCCCH
Q 019702 161 NEIGGD---------GDIPH-----S---AIGT-----------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTE 212 (337)
Q Consensus 161 ~ei~~~---------~~~~~-----~---~~~~-----------~~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~~ 212 (337)
..+... ..... . .+.. .+....+|+||+||+++|+|++.+|++||+||||++
T Consensus 79 ~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDEP~~~ 158 (211)
T cd03298 79 NNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAA 158 (211)
T ss_pred cccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence 222110 00000 0 0000 022345799999999999999999999999999999
Q ss_pred HHH-------HHHHHHHh-cCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEec
Q 019702 213 AEA-------HACRSIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLG 259 (337)
Q Consensus 213 ld~-------~~l~~~~~-~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g 259 (337)
+|. +.+.++.+ .|.|+|++||+.+++..+||+++ ++++|+++..|
T Consensus 159 LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~--~l~~G~i~~~~ 211 (211)
T cd03298 159 LDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVV--FLDNGRIAAQG 211 (211)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEE--EEECCEEeecC
Confidence 995 34555554 48999999999999999999999 99999987653
No 153
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=5.3e-28 Score=224.90 Aligned_cols=168 Identities=15% Similarity=0.152 Sum_probs=126.2
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCC------------------CeEEEEc
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ------------------KRVVIVD 158 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~------------------~~i~~v~ 158 (337)
+++++++|+......++++++.+++|++++|+||||||||||+++|+|+++|+.+ ..+.++.
T Consensus 10 i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~ 89 (269)
T PRK13648 10 FKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIGIVF 89 (269)
T ss_pred EEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheeEEE
Confidence 6789999975322358999999999999999999999999999999999988632 1233333
Q ss_pred CCcc-cccCC-------------CCccc----cc-------cc----chhccCCCcchhHHHHHHHHHhhCCcEEEEcCC
Q 019702 159 TSNE-IGGDG-------------DIPHS----AI-------GT----ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEI 209 (337)
Q Consensus 159 ~~~e-i~~~~-------------~~~~~----~~-------~~----~~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp 209 (337)
+... ..... ..+.. .+ +. ......+|+||+||++||+|++.+|++||+|||
T Consensus 90 q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEP 169 (269)
T PRK13648 90 QNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEA 169 (269)
T ss_pred eChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 3321 00000 00000 00 00 022335799999999999999999999999999
Q ss_pred CCHHHH-------HHHHHHHhc-CCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHh
Q 019702 210 GTEAEA-------HACRSIAER-GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (337)
Q Consensus 210 ~~~ld~-------~~l~~~~~~-G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~ 267 (337)
|+++|. +.+.++.++ |.|+|++||+.+++.. ||+++ ++++|+++..|+++++...
T Consensus 170 t~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~-~d~i~--~l~~G~i~~~g~~~~~~~~ 232 (269)
T PRK13648 170 TSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAME-ADHVI--VMNKGTVYKEGTPTEIFDH 232 (269)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhc-CCEEE--EEECCEEEEecCHHHHhcC
Confidence 999995 345555544 8999999999998875 99999 9999999999999988654
No 154
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=4.7e-28 Score=220.49 Aligned_cols=161 Identities=14% Similarity=0.114 Sum_probs=118.6
Q ss_pred EeeEEEEECCcc--ccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCC----------------------C
Q 019702 97 IVGLTCRVGRAV--SGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ----------------------K 152 (337)
Q Consensus 97 i~~l~~r~~~~~--~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~----------------------~ 152 (337)
+++++++|+... ...++++++.+++|++++|+||||||||||+++|+|+++|+.+ .
T Consensus 8 ~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 87 (233)
T PRK11629 8 CDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAELRNQ 87 (233)
T ss_pred EEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHHHhc
Confidence 678999996421 2359999999999999999999999999999999999987622 1
Q ss_pred eEEEEcCCcccccCCCC-------------cccc----ccc-----------chhccCCCcchhHHHHHHHHHhhCCcEE
Q 019702 153 RVVIVDTSNEIGGDGDI-------------PHSA----IGT-----------ARRMQVPEPSLQHKVMIEAVENHMPEVI 204 (337)
Q Consensus 153 ~i~~v~~~~ei~~~~~~-------------~~~~----~~~-----------~~~~~~~S~g~k~r~~ia~al~~~P~vl 204 (337)
.+.++.+...+.....+ .... +.. .+....+|+||+||+++|+|++.+|++|
T Consensus 88 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al~~~p~ll 167 (233)
T PRK11629 88 KLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLV 167 (233)
T ss_pred cEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 24444443221110000 0000 000 0223347999999999999999999999
Q ss_pred EEcCCCCHHHH-------HHHHHHHh-cCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecC
Q 019702 205 IVDEIGTEAEA-------HACRSIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGD 260 (337)
Q Consensus 205 ilDEp~~~ld~-------~~l~~~~~-~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~ 260 (337)
|+||||+++|. +.+.++++ .|.|||++||+.+++..+ ++++ ++++|+++..+.
T Consensus 168 lLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~-~~~~--~l~~G~i~~~~~ 228 (233)
T PRK11629 168 LADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRM-SRQL--EMRDGRLTAELS 228 (233)
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhh-CEEE--EEECCEEEEEec
Confidence 99999999995 34555554 589999999999988765 5888 899999987654
No 155
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.95 E-value=3.7e-28 Score=213.22 Aligned_cols=150 Identities=15% Similarity=0.135 Sum_probs=112.8
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEcCC-----------ccccc
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTS-----------NEIGG 165 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~~~-----------~ei~~ 165 (337)
+++++++| .++++++.+++|++++|+||||||||||+++|+|+++|+ .+.+.+-... ..+++
T Consensus 7 ~~~l~~~~------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~-~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (182)
T cd03215 7 VRGLSVKG------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPA-SGEITLDGKPVTRRSPRDAIRAGIAY 79 (182)
T ss_pred EeccEEEe------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC-CceEEECCEECCccCHHHHHhCCeEE
Confidence 56888888 389999999999999999999999999999999999887 3444432111 01111
Q ss_pred CCC-------Ccccccccchhc-cCCCcchhHHHHHHHHHhhCCcEEEEcCCCCHHHH-------HHHHHHHhcCCeEEE
Q 019702 166 DGD-------IPHSAIGTARRM-QVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEA-------HACRSIAERGVMLIG 230 (337)
Q Consensus 166 ~~~-------~~~~~~~~~~~~-~~~S~g~k~r~~ia~al~~~P~vlilDEp~~~ld~-------~~l~~~~~~G~tvi~ 230 (337)
... ++...+...-.. ..+|+||+||++||+|++.+|++|++|||++++|. +.+.++.++|.|+|+
T Consensus 80 ~~q~~~~~~~~~~~t~~e~l~~~~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii 159 (182)
T cd03215 80 VPEDRKREGLVLDLSVAENIALSSLLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLL 159 (182)
T ss_pred ecCCcccCcccCCCcHHHHHHHHhhcCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 110 010111100001 11899999999999999999999999999999995 345555566899999
Q ss_pred EEcCcchhHHhhchHHHHHhcCceE
Q 019702 231 TAHGEWLENIIKNPILSDLIGGVDT 255 (337)
Q Consensus 231 t~H~~~~~~~~~d~v~~~ll~~G~i 255 (337)
+||+.+.+..+||+++ ++++|++
T Consensus 160 ~sh~~~~~~~~~d~v~--~l~~G~i 182 (182)
T cd03215 160 ISSELDELLGLCDRIL--VMYEGRI 182 (182)
T ss_pred EeCCHHHHHHhCCEEE--EecCCcC
Confidence 9999999999999999 8887763
No 156
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=1e-27 Score=224.26 Aligned_cols=168 Identities=18% Similarity=0.229 Sum_probs=127.0
Q ss_pred EeeEEEEECCc----cccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCC-------------------e
Q 019702 97 IVGLTCRVGRA----VSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK-------------------R 153 (337)
Q Consensus 97 i~~l~~r~~~~----~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~-------------------~ 153 (337)
+++++++|... ....++++++.+.+|++++|+||||||||||+++|+|+++|+.+. .
T Consensus 7 ~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~~ 86 (280)
T PRK13633 7 CKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDIRNK 86 (280)
T ss_pred EeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHHhhh
Confidence 67999999642 123599999999999999999999999999999999999887321 1
Q ss_pred EEEEcCCcc--cccC------------CCCcccc----c-------cc----chhccCCCcchhHHHHHHHHHhhCCcEE
Q 019702 154 VVIVDTSNE--IGGD------------GDIPHSA----I-------GT----ARRMQVPEPSLQHKVMIEAVENHMPEVI 204 (337)
Q Consensus 154 i~~v~~~~e--i~~~------------~~~~~~~----~-------~~----~~~~~~~S~g~k~r~~ia~al~~~P~vl 204 (337)
+.++.+... +... ..++... + +. .+....+|+||+||++||+|++.+|++|
T Consensus 87 i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~ll 166 (280)
T PRK13633 87 AGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECI 166 (280)
T ss_pred eEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 333333221 1000 0000000 0 00 0233457999999999999999999999
Q ss_pred EEcCCCCHHHH-------HHHHHHHh-cCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHh
Q 019702 205 IVDEIGTEAEA-------HACRSIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (337)
Q Consensus 205 ilDEp~~~ld~-------~~l~~~~~-~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~ 267 (337)
|+|||++++|. +.+.++.+ .|.|||++||+++.+.. ||+++ ++++|+++..|++++++..
T Consensus 167 llDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~-~d~v~--~l~~G~i~~~g~~~~~~~~ 234 (280)
T PRK13633 167 IFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVE-ADRII--VMDSGKVVMEGTPKEIFKE 234 (280)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhc-CCEEE--EEECCEEEEecCHHHHhcC
Confidence 99999999995 34555554 49999999999998875 99999 9999999999999998764
No 157
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=6.9e-28 Score=213.35 Aligned_cols=160 Identities=16% Similarity=0.192 Sum_probs=116.8
Q ss_pred EeeEEEEECCc--cccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHcccc--ccCCCeEEEEcCC------cccccC
Q 019702 97 IVGLTCRVGRA--VSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLS--DEFQKRVVIVDTS------NEIGGD 166 (337)
Q Consensus 97 i~~l~~r~~~~--~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~--~~~~~~i~~v~~~------~ei~~~ 166 (337)
+++++++|... ....++++++.+++|++++|+||||||||||+++|+|+.. |+ .+.+.+-... ..+++.
T Consensus 6 ~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~-~G~i~~~g~~~~~~~~~~i~~~ 84 (192)
T cd03232 6 WKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVI-TGEILINGRPLDKNFQRSTGYV 84 (192)
T ss_pred EeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCc-ceEEEECCEehHHHhhhceEEe
Confidence 56899999641 1235999999999999999999999999999999999863 44 3444321111 011111
Q ss_pred CC----Cccccccc----chhccCCCcchhHHHHHHHHHhhCCcEEEEcCCCCHHHH-------HHHHHHHhcCCeEEEE
Q 019702 167 GD----IPHSAIGT----ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEA-------HACRSIAERGVMLIGT 231 (337)
Q Consensus 167 ~~----~~~~~~~~----~~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~~ld~-------~~l~~~~~~G~tvi~t 231 (337)
.. ++...+.. ......+|+||+||+++|+|++.+|++|++|||++++|. +.+.++++.|.|+|++
T Consensus 85 ~q~~~~~~~~tv~~~l~~~~~~~~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiiv 164 (192)
T cd03232 85 EQQDVHSPNLTVREALRFSALLRGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCT 164 (192)
T ss_pred cccCccccCCcHHHHHHHHHHHhcCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEE
Confidence 00 11101100 011126999999999999999999999999999999995 3455555668999999
Q ss_pred EcCcc-hhHHhhchHHHHHhcC-ceEEEec
Q 019702 232 AHGEW-LENIIKNPILSDLIGG-VDTVTLG 259 (337)
Q Consensus 232 ~H~~~-~~~~~~d~v~~~ll~~-G~iv~~g 259 (337)
||+.+ .+..+||+++ ++++ |++++.|
T Consensus 165 tH~~~~~~~~~~d~i~--~l~~~g~i~~~g 192 (192)
T cd03232 165 IHQPSASIFEKFDRLL--LLKRGGKTVYFG 192 (192)
T ss_pred EcCChHHHHhhCCEEE--EEcCCCeEEeCC
Confidence 99998 4678899999 8888 9998764
No 158
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.95 E-value=6.9e-28 Score=203.91 Aligned_cols=138 Identities=17% Similarity=0.265 Sum_probs=111.5
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEcCCcccccCCCCccccccc
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGT 176 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~~~~ei~~~~~~~~~~~~~ 176 (337)
+++++++|+... .++++++.+++|++++|+||||||||||+++|+|+++|+ .+.|.+ +....+++
T Consensus 3 ~~~l~~~~~~~~--~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~-~G~i~~-~~~~~i~~----------- 67 (144)
T cd03221 3 LENLSKTYGGKL--LLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPD-EGIVTW-GSTVKIGY----------- 67 (144)
T ss_pred EEEEEEEECCce--EEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCC-ceEEEE-CCeEEEEE-----------
Confidence 568999997654 499999999999999999999999999999999999887 455543 33222211
Q ss_pred chhccCCCcchhHHHHHHHHHhhCCcEEEEcCCCCHHHHHH---HH-HHHhcCCeEEEEEcCcchhHHhhchHHHHHhcC
Q 019702 177 ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA---CR-SIAERGVMLIGTAHGEWLENIIKNPILSDLIGG 252 (337)
Q Consensus 177 ~~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~~ld~~~---l~-~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~ 252 (337)
...+|+||+||++||+|++.+|+++++|||++++|... +. .+.+.+.|++++||+.+++..+||+++ ++++
T Consensus 68 ---~~~lS~G~~~rv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~til~~th~~~~~~~~~d~v~--~l~~ 142 (144)
T cd03221 68 ---FEQLSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEYPGTVILVSHDRYFLDQVATKII--ELED 142 (144)
T ss_pred ---EccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEE--EEeC
Confidence 11189999999999999999999999999999999533 22 223336899999999999988999998 7777
Q ss_pred ce
Q 019702 253 VD 254 (337)
Q Consensus 253 G~ 254 (337)
|+
T Consensus 143 g~ 144 (144)
T cd03221 143 GK 144 (144)
T ss_pred CC
Confidence 64
No 159
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=9.4e-28 Score=221.08 Aligned_cols=166 Identities=13% Similarity=0.114 Sum_probs=125.7
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHcccccc----CCCe-------------------
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDE----FQKR------------------- 153 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~----~~~~------------------- 153 (337)
+++++++|+... .++++++.+.+|++++|+||||||||||+++|+|+++|+ ..+.
T Consensus 7 ~~~l~~~~~~~~--~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~ 84 (253)
T PRK14267 7 TVNLRVYYGSNH--VIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVR 84 (253)
T ss_pred EEeEEEEeCCee--eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHHh
Confidence 678999997644 499999999999999999999999999999999999763 1232
Q ss_pred --EEEEcCCcccccCC-------------CC--ccc----c-------ccc--------chhccCCCcchhHHHHHHHHH
Q 019702 154 --VVIVDTSNEIGGDG-------------DI--PHS----A-------IGT--------ARRMQVPEPSLQHKVMIEAVE 197 (337)
Q Consensus 154 --i~~v~~~~ei~~~~-------------~~--~~~----~-------~~~--------~~~~~~~S~g~k~r~~ia~al 197 (337)
+.++.+...+.... .. +.. . ++. ......+|+||+||++||+|+
T Consensus 85 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral 164 (253)
T PRK14267 85 REVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIARAL 164 (253)
T ss_pred hceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHHHHHHH
Confidence 33333322111000 00 000 0 000 012334799999999999999
Q ss_pred hhCCcEEEEcCCCCHHHHH-------HHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHh
Q 019702 198 NHMPEVIIVDEIGTEAEAH-------ACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (337)
Q Consensus 198 ~~~P~vlilDEp~~~ld~~-------~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~ 267 (337)
+.+|++||+|||++++|.. .+.++.+ +.|+|++||+.+.+..+||+++ ++++|+++..|++++++..
T Consensus 165 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~~~~~~~d~i~--~l~~G~i~~~~~~~~~~~~ 238 (253)
T PRK14267 165 AMKPKILLMDEPTANIDPVGTAKIEELLFELKK-EYTIVLVTHSPAQAARVSDYVA--FLYLGKLIEVGPTRKVFEN 238 (253)
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh-CCEEEEEECCHHHHHhhCCEEE--EEECCEEEEeCCHHHHHhC
Confidence 9999999999999999953 3444443 6899999999999989999999 9999999999999988753
No 160
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.95 E-value=4.5e-28 Score=218.68 Aligned_cols=157 Identities=13% Similarity=0.100 Sum_probs=115.1
Q ss_pred EeeEEEEECCcc--ccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCC----------------------C
Q 019702 97 IVGLTCRVGRAV--SGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ----------------------K 152 (337)
Q Consensus 97 i~~l~~r~~~~~--~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~----------------------~ 152 (337)
+++++++|+... ...++++++.+++|++++|+||||||||||+++|+|+++|+.+ .
T Consensus 4 ~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 83 (221)
T TIGR02211 4 CENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLRNK 83 (221)
T ss_pred EEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHHHh
Confidence 568999996421 2359999999999999999999999999999999999987632 1
Q ss_pred eEEEEcCCcccccCCC-------------Ccccc----ccc-----------chhccCCCcchhHHHHHHHHHhhCCcEE
Q 019702 153 RVVIVDTSNEIGGDGD-------------IPHSA----IGT-----------ARRMQVPEPSLQHKVMIEAVENHMPEVI 204 (337)
Q Consensus 153 ~i~~v~~~~ei~~~~~-------------~~~~~----~~~-----------~~~~~~~S~g~k~r~~ia~al~~~P~vl 204 (337)
.+.++.+...+..... ..... +.. .+....+|+||+||+++|+|++.+|++|
T Consensus 84 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~il 163 (221)
T TIGR02211 84 KLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQPSLV 163 (221)
T ss_pred cEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEE
Confidence 2344433322110000 00000 000 0223457999999999999999999999
Q ss_pred EEcCCCCHHHH-------HHHHHHHh-cCCeEEEEEcCcchhHHhhchHHHHHhcCceEE
Q 019702 205 IVDEIGTEAEA-------HACRSIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTV 256 (337)
Q Consensus 205 ilDEp~~~ld~-------~~l~~~~~-~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv 256 (337)
|+||||+++|. +.+.++.+ .|.|+|++||+.+++.. +|+++ ++++|+++
T Consensus 164 llDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~-~d~v~--~l~~G~i~ 220 (221)
T TIGR02211 164 LADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKK-LDRVL--EMKDGQLF 220 (221)
T ss_pred EEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhh-cCEEE--EEeCCEec
Confidence 99999999995 34555554 48999999999998864 79999 89999875
No 161
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.95 E-value=1.1e-27 Score=220.86 Aligned_cols=166 Identities=16% Similarity=0.176 Sum_probs=126.6
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccc----cCC----------------CeEEE
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSD----EFQ----------------KRVVI 156 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~----~~~----------------~~i~~ 156 (337)
+++++++| ... .++++++.+.+|++++|+||||||||||+++|+|+++| +.+ ..+.+
T Consensus 7 ~~~l~~~~-~~~--il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i~~ 83 (254)
T PRK10418 7 LRNIALQA-AQP--LVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKIAT 83 (254)
T ss_pred EeCeEEEe-ccc--eecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccceEEE
Confidence 56899999 333 49999999999999999999999999999999999987 422 12444
Q ss_pred EcCCcc--cccCC-------------CCccc--c-------ccc-------chhccCCCcchhHHHHHHHHHhhCCcEEE
Q 019702 157 VDTSNE--IGGDG-------------DIPHS--A-------IGT-------ARRMQVPEPSLQHKVMIEAVENHMPEVII 205 (337)
Q Consensus 157 v~~~~e--i~~~~-------------~~~~~--~-------~~~-------~~~~~~~S~g~k~r~~ia~al~~~P~vli 205 (337)
+.+... +.... ..... . ++. ......+|+||+||++||+|++.+|++||
T Consensus 84 v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLl 163 (254)
T PRK10418 84 IMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAPFII 163 (254)
T ss_pred EecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhcCCCEEE
Confidence 444321 11000 00000 0 000 01234579999999999999999999999
Q ss_pred EcCCCCHHHH-------HHHHHHHh-cCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHh
Q 019702 206 VDEIGTEAEA-------HACRSIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (337)
Q Consensus 206 lDEp~~~ld~-------~~l~~~~~-~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~ 267 (337)
+||||+++|. +.+.++.+ .|.|||++||+.+.+..+||+++ ++++|+++..|++++++..
T Consensus 164 LDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~--~l~~G~i~~~~~~~~~~~~ 231 (254)
T PRK10418 164 ADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVA--VMSHGRIVEQGDVETLFNA 231 (254)
T ss_pred EeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEE--EEECCEEEEecCHHHHhhC
Confidence 9999999995 34555554 48999999999999988999999 9999999999999988653
No 162
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.95 E-value=6.1e-28 Score=219.51 Aligned_cols=168 Identities=17% Similarity=0.158 Sum_probs=133.1
Q ss_pred EeeEEEEECCc-------cccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEcCCcccccC---
Q 019702 97 IVGLTCRVGRA-------VSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGD--- 166 (337)
Q Consensus 97 i~~l~~r~~~~-------~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~~~~ei~~~--- 166 (337)
++++++.|... ...++++|+|.+++|+.++|+|.+|||||||-|+|+|++.|+ .+.|.+-... +...
T Consensus 7 v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt-~G~i~f~g~~--i~~~~~~ 83 (268)
T COG4608 7 VKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPT-SGEILFEGKD--ITKLSKE 83 (268)
T ss_pred EeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCC-CceEEEcCcc--hhhcchh
Confidence 45666666432 135689999999999999999999999999999999999998 5666554322 1100
Q ss_pred ------------CCCcccccccchhccCCCcchhHHHHHHHHHhhCCcEEEEcCCCCHHHH-------HHHHHHHh-cCC
Q 019702 167 ------------GDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEA-------HACRSIAE-RGV 226 (337)
Q Consensus 167 ------------~~~~~~~~~~~~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~~ld~-------~~l~~~~~-~G~ 226 (337)
-+.+... ..+....+||||+||++|||||+.+|+++++|||+|++|. .++..+.+ .|.
T Consensus 84 ~~~~~v~elL~~Vgl~~~~--~~ryPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~l 161 (268)
T COG4608 84 ERRERVLELLEKVGLPEEF--LYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGL 161 (268)
T ss_pred HHHHHHHHHHHHhCCCHHH--hhcCCcccCchhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCC
Confidence 0011111 1244566899999999999999999999999999999994 44666664 499
Q ss_pred eEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHhhhHH
Q 019702 227 MLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARRCQKS 271 (337)
Q Consensus 227 tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~~~~~ 271 (337)
+.+++|||++.+..+||++. +|..|++|..|+.++++..+.+.
T Consensus 162 t~lFIsHDL~vv~~isdri~--VMy~G~iVE~g~~~~~~~~p~Hp 204 (268)
T COG4608 162 TYLFISHDLSVVRYISDRIA--VMYLGKIVEIGPTEEVFSNPLHP 204 (268)
T ss_pred eEEEEEEEHHhhhhhcccEE--EEecCceeEecCHHHHhhCCCCH
Confidence 99999999999999999999 99999999999999999875443
No 163
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=1e-27 Score=218.12 Aligned_cols=166 Identities=16% Similarity=0.176 Sum_probs=125.0
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeE-------------------EEE
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRV-------------------VIV 157 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i-------------------~~v 157 (337)
+++++++|+......++++++.+.+|++++|+||||||||||+++|+|+++|+. +.| .++
T Consensus 3 ~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~-G~i~~~g~~~~~~~~~~~~~~i~~~ 81 (234)
T cd03251 3 FKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDS-GRILIDGHDVRDYTLASLRRQIGLV 81 (234)
T ss_pred EEEEEEEeCCCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCC-CEEEECCEEhhhCCHHHHHhhEEEe
Confidence 578999997542235899999999999999999999999999999999998873 333 333
Q ss_pred cCCcccccC----------CCCccccc-------cc---------------chhccCCCcchhHHHHHHHHHhhCCcEEE
Q 019702 158 DTSNEIGGD----------GDIPHSAI-------GT---------------ARRMQVPEPSLQHKVMIEAVENHMPEVII 205 (337)
Q Consensus 158 ~~~~ei~~~----------~~~~~~~~-------~~---------------~~~~~~~S~g~k~r~~ia~al~~~P~vli 205 (337)
++...+... .......+ .. ......+|+||+||++||+|++.+|++|+
T Consensus 82 ~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lll 161 (234)
T cd03251 82 SQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILI 161 (234)
T ss_pred CCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCEEE
Confidence 332211100 00000000 00 01234589999999999999999999999
Q ss_pred EcCCCCHHHHH-------HHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHh
Q 019702 206 VDEIGTEAEAH-------ACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (337)
Q Consensus 206 lDEp~~~ld~~-------~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~ 267 (337)
+|||++++|.. .+.++. +|.|||++||+.+++.. ||+++ ++++|+++..|+++++...
T Consensus 162 LDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~~~~-~d~v~--~l~~G~i~~~~~~~~~~~~ 226 (234)
T cd03251 162 LDEATSALDTESERLVQAALERLM-KNRTTFVIAHRLSTIEN-ADRIV--VLEDGKIVERGTHEELLAQ 226 (234)
T ss_pred EeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCHHHHhh-CCEEE--EecCCeEeeeCCHHHHHHc
Confidence 99999999953 344443 48999999999998865 99999 9999999999999887653
No 164
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.95 E-value=1.1e-27 Score=218.75 Aligned_cols=166 Identities=16% Similarity=0.190 Sum_probs=126.7
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCC----------------CeEEEEcCC
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ----------------KRVVIVDTS 160 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~----------------~~i~~v~~~ 160 (337)
+++++++|+... .++++++.+.+|++++|+||||||||||+++|+|+++|+.+ ..+.++++.
T Consensus 3 i~~l~~~~~~~~--il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~~~~~i~~~~q~ 80 (237)
T TIGR00968 3 IANISKRFGSFQ--ALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIGFVFQH 80 (237)
T ss_pred EEEEEEEECCee--eeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcCEEEEecC
Confidence 678999997654 49999999999999999999999999999999999987632 123333332
Q ss_pred cccccCCCCccc-----------------ccc-c----------chhccCCCcchhHHHHHHHHHhhCCcEEEEcCCCCH
Q 019702 161 NEIGGDGDIPHS-----------------AIG-T----------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTE 212 (337)
Q Consensus 161 ~ei~~~~~~~~~-----------------~~~-~----------~~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~~ 212 (337)
..+.....+.++ .+. . ......+|+||+||+++|++++.+|+++++|||+++
T Consensus 81 ~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~~ 160 (237)
T TIGR00968 81 YALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGA 160 (237)
T ss_pred hhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence 211100000000 000 0 012234799999999999999999999999999999
Q ss_pred HHH-------HHHHHHHhc-CCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHH
Q 019702 213 AEA-------HACRSIAER-GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (337)
Q Consensus 213 ld~-------~~l~~~~~~-G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~ 266 (337)
+|. +.+.++.++ |.|+|++||+.+++..+||+++ ++++|+++..|++++++.
T Consensus 161 LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~--~l~~g~i~~~~~~~~~~~ 220 (237)
T TIGR00968 161 LDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIV--VMSNGKIEQIGSPDEVYD 220 (237)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEE--EEECCEEEEecCHHHHHc
Confidence 995 344555554 8999999999999999999999 999999999999988765
No 165
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.95 E-value=9.9e-28 Score=215.52 Aligned_cols=158 Identities=13% Similarity=0.121 Sum_probs=119.9
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCC----------------CeEEEEcCC
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ----------------KRVVIVDTS 160 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~----------------~~i~~v~~~ 160 (337)
+++++++|.. . +.++++.+.+|++++|+||||||||||+++|+|+++|+.+ ..+.++.+.
T Consensus 3 ~~~l~~~~~~--~--~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~ 78 (213)
T TIGR01277 3 LDKVRYEYEH--L--PMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQE 78 (213)
T ss_pred EEeeeEEeCC--c--ceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCChhccceEEEecc
Confidence 5789999963 2 5689999999999999999999999999999999988732 123444443
Q ss_pred cccccCCCC---------cc--------cccc-c----------chhccCCCcchhHHHHHHHHHhhCCcEEEEcCCCCH
Q 019702 161 NEIGGDGDI---------PH--------SAIG-T----------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTE 212 (337)
Q Consensus 161 ~ei~~~~~~---------~~--------~~~~-~----------~~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~~ 212 (337)
..+.....+ +. ..+. . .+....+|+||+||++||+|++.+|+++++||||++
T Consensus 79 ~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~ 158 (213)
T TIGR01277 79 NNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSA 158 (213)
T ss_pred CccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCcc
Confidence 222110000 00 0000 0 022345799999999999999999999999999999
Q ss_pred HHHH-------HHHHHHhc-CCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecC
Q 019702 213 AEAH-------ACRSIAER-GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGD 260 (337)
Q Consensus 213 ld~~-------~l~~~~~~-G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~ 260 (337)
+|.. .+.++.++ |.|+|++||+.+++..+||+++ ++++|++++.|+
T Consensus 159 LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~--~l~~g~i~~~~~ 212 (213)
T TIGR01277 159 LDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIA--VVSQGKIKVVSD 212 (213)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEE--EEECCeEEEecC
Confidence 9953 45555554 8999999999999888999999 999999988764
No 166
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=1.3e-27 Score=222.20 Aligned_cols=166 Identities=14% Similarity=0.128 Sum_probs=125.1
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHcccc-----ccCC--------------------
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLS-----DEFQ-------------------- 151 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~-----~~~~-------------------- 151 (337)
+++++++|+.... ++++++.+.+|++++|+||||||||||+++|+|++. |+.+
T Consensus 24 ~~~l~~~~~~~~i--l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~ 101 (268)
T PRK14248 24 VKDLSIYYGEKRA--VNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLR 101 (268)
T ss_pred EEEEEEEeCCcee--eeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHHHHh
Confidence 6689999976544 999999999999999999999999999999999864 3311
Q ss_pred CeEEEEcCCcccccC------------CCC-ccc----ccc-------c--------chhccCCCcchhHHHHHHHHHhh
Q 019702 152 KRVVIVDTSNEIGGD------------GDI-PHS----AIG-------T--------ARRMQVPEPSLQHKVMIEAVENH 199 (337)
Q Consensus 152 ~~i~~v~~~~ei~~~------------~~~-~~~----~~~-------~--------~~~~~~~S~g~k~r~~ia~al~~ 199 (337)
.++.++.+...+... ... ... .+. . .+....+|+||+||++||+|++.
T Consensus 102 ~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~laral~~ 181 (268)
T PRK14248 102 REIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTLAM 181 (268)
T ss_pred ccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHHHHHHHhC
Confidence 123444433221100 000 000 000 0 02234579999999999999999
Q ss_pred CCcEEEEcCCCCHHHHH-------HHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHh
Q 019702 200 MPEVIIVDEIGTEAEAH-------ACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (337)
Q Consensus 200 ~P~vlilDEp~~~ld~~-------~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~ 267 (337)
+|++||+||||+++|.. .+.++.+ +.|||++||+.+++..+||+++ ++++|+++..|++++++..
T Consensus 182 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~~~~~~~d~v~--~l~~G~i~~~~~~~~~~~~ 253 (268)
T PRK14248 182 KPAVLLLDEPASALDPISNAKIEELITELKE-EYSIIIVTHNMQQALRVSDRTA--FFLNGDLVEYDQTEQIFTS 253 (268)
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEEeCHHHHHHhCCEEE--EEECCEEEEeCCHHHHHhC
Confidence 99999999999999953 3444433 6899999999999989999999 9999999999999988754
No 167
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.95 E-value=1.7e-27 Score=221.96 Aligned_cols=165 Identities=15% Similarity=0.149 Sum_probs=126.4
Q ss_pred EeeEEEEECC-ccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCC---------------CeEEEEcCC
Q 019702 97 IVGLTCRVGR-AVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ---------------KRVVIVDTS 160 (337)
Q Consensus 97 i~~l~~r~~~-~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~---------------~~i~~v~~~ 160 (337)
+++++++|++ .. .++++++.+++|++++|+||||||||||+++|+|+++|+.+ ..+.++++.
T Consensus 9 ~~~l~~~~~~~~~--il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~i~~v~q~ 86 (272)
T PRK15056 9 VNDVTVTWRNGHT--ALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAYVPQS 86 (272)
T ss_pred EEeEEEEecCCcE--EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHHhhccceEEEeccc
Confidence 6689999963 33 48999999999999999999999999999999999988632 135555544
Q ss_pred ccccc--CCCC-----------------ccc----cccc-----------chhccCCCcchhHHHHHHHHHhhCCcEEEE
Q 019702 161 NEIGG--DGDI-----------------PHS----AIGT-----------ARRMQVPEPSLQHKVMIEAVENHMPEVIIV 206 (337)
Q Consensus 161 ~ei~~--~~~~-----------------~~~----~~~~-----------~~~~~~~S~g~k~r~~ia~al~~~P~vlil 206 (337)
..+.+ ...+ +.. .... .+....+|+||+||++||+|++.+|++|++
T Consensus 87 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~~~p~llll 166 (272)
T PRK15056 87 EEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILL 166 (272)
T ss_pred cccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 32100 0000 000 0000 022345799999999999999999999999
Q ss_pred cCCCCHHHH-------HHHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHH
Q 019702 207 DEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (337)
Q Consensus 207 DEp~~~ld~-------~~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~ 266 (337)
||||+++|. +.+.+++++|.|||++||+.+.+..+||+++ ++ +|+++..|++++++.
T Consensus 167 DEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v~--~~-~G~i~~~g~~~~~~~ 230 (272)
T PRK15056 167 DEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTV--MV-KGTVLASGPTETTFT 230 (272)
T ss_pred eCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEE--EE-CCEEEeecCHHhccC
Confidence 999999995 3455556668999999999999989999988 77 799999999988754
No 168
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.95 E-value=1e-27 Score=218.76 Aligned_cols=165 Identities=16% Similarity=0.186 Sum_probs=124.5
Q ss_pred EeeEEEEECCcc-ccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCe-------------------EEE
Q 019702 97 IVGLTCRVGRAV-SGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKR-------------------VVI 156 (337)
Q Consensus 97 i~~l~~r~~~~~-~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~-------------------i~~ 156 (337)
+++++++|+... ...++++++.+++|++++|+||||||||||+++|+|+++|.. +. +.+
T Consensus 3 i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~-G~i~~~g~~~~~~~~~~~~~~i~~ 81 (238)
T cd03249 3 FKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTS-GEILLDGVDIRDLNLRWLRSQIGL 81 (238)
T ss_pred EEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCC-CEEEECCEehhhcCHHHHHhhEEE
Confidence 678999996421 235899999999999999999999999999999999998873 33 334
Q ss_pred EcCCcccccC----------CCCccccc-------cc---------------chhccCCCcchhHHHHHHHHHhhCCcEE
Q 019702 157 VDTSNEIGGD----------GDIPHSAI-------GT---------------ARRMQVPEPSLQHKVMIEAVENHMPEVI 204 (337)
Q Consensus 157 v~~~~ei~~~----------~~~~~~~~-------~~---------------~~~~~~~S~g~k~r~~ia~al~~~P~vl 204 (337)
+.+...+... ........ +. ......+|+||+||+++|+|++.+|++|
T Consensus 82 ~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~ll 161 (238)
T cd03249 82 VSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKIL 161 (238)
T ss_pred ECCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCEE
Confidence 4333211100 00000000 00 0112457999999999999999999999
Q ss_pred EEcCCCCHHHHH-------HHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHH
Q 019702 205 IVDEIGTEAEAH-------ACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (337)
Q Consensus 205 ilDEp~~~ld~~-------~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~ 266 (337)
|+|||++++|.. .+..+. +|.+||++||+.+++. .||+++ ++++|+++..|+++++..
T Consensus 162 llDEP~~gLD~~~~~~l~~~l~~~~-~g~~vi~~sh~~~~~~-~~d~v~--~l~~G~i~~~~~~~~~~~ 226 (238)
T cd03249 162 LLDEATSALDAESEKLVQEALDRAM-KGRTTIVIAHRLSTIR-NADLIA--VLQNGQVVEQGTHDELMA 226 (238)
T ss_pred EEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHHHh-hCCEEE--EEECCEEEEeCCHHHHhh
Confidence 999999999953 344444 6899999999999887 899999 999999999999887765
No 169
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.95 E-value=4.3e-28 Score=219.74 Aligned_cols=158 Identities=18% Similarity=0.224 Sum_probs=120.4
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEcCC-----cccccC--CCC
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTS-----NEIGGD--GDI 169 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~~~-----~ei~~~--~~~ 169 (337)
+++++++|+...+ ++++++.+++|++++|+||||||||||+++|+|+++|+ .+.|.+-... ....+. ..+
T Consensus 25 ~~~~~~~~~~~~i--l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~-~G~i~~~g~~~~~~~~~~~~~~~~tv 101 (224)
T cd03220 25 ILGRKGEVGEFWA--LKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPD-SGTVTVRGRVSSLLGLGGGFNPELTG 101 (224)
T ss_pred hhhhhhhcCCeEE--EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-ceEEEECCEEchhhcccccCCCCCcH
Confidence 5578889987665 99999999999999999999999999999999999887 3444432110 001100 000
Q ss_pred -------------cccc----c-------cc----chhccCCCcchhHHHHHHHHHhhCCcEEEEcCCCCHHHHH-----
Q 019702 170 -------------PHSA----I-------GT----ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAH----- 216 (337)
Q Consensus 170 -------------~~~~----~-------~~----~~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~~ld~~----- 216 (337)
.... . +. .+....+|+||+||+++|+|++.+|++||+|||++++|..
T Consensus 102 ~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~~~~~ 181 (224)
T cd03220 102 RENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKC 181 (224)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH
Confidence 0000 0 00 0223457999999999999999999999999999999953
Q ss_pred --HHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEec
Q 019702 217 --ACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLG 259 (337)
Q Consensus 217 --~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g 259 (337)
.+.++++.|.|||++||+.+++..+||+++ ++++|+++..|
T Consensus 182 ~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~--~l~~G~i~~~g 224 (224)
T cd03220 182 QRRLRELLKQGKTVILVSHDPSSIKRLCDRAL--VLEKGKIRFDG 224 (224)
T ss_pred HHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEE--EEECCEEEecC
Confidence 455555668999999999999999999999 89999988754
No 170
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=1.6e-27 Score=219.49 Aligned_cols=166 Identities=18% Similarity=0.165 Sum_probs=125.9
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHcccc--cc--CCC--------------------
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLS--DE--FQK-------------------- 152 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~--~~--~~~-------------------- 152 (337)
+++++++|+... .++++++.+.+|++++|+||||||||||+++|+|+++ |+ ..+
T Consensus 7 ~~nl~~~~~~~~--~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~ 84 (252)
T PRK14256 7 LEQLNVHFGKNH--AVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIR 84 (252)
T ss_pred EEEEEEEeCCee--EEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHhh
Confidence 679999997544 4999999999999999999999999999999999985 31 112
Q ss_pred -eEEEEcCCcccccCC-------------C-Cccc----c-------ccc--------chhccCCCcchhHHHHHHHHHh
Q 019702 153 -RVVIVDTSNEIGGDG-------------D-IPHS----A-------IGT--------ARRMQVPEPSLQHKVMIEAVEN 198 (337)
Q Consensus 153 -~i~~v~~~~ei~~~~-------------~-~~~~----~-------~~~--------~~~~~~~S~g~k~r~~ia~al~ 198 (337)
.+.++.+...+.... . .... . ++. ......+|+||+||++||+|++
T Consensus 85 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~ 164 (252)
T PRK14256 85 RRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTIA 164 (252)
T ss_pred ccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHHHHh
Confidence 244444332211100 0 0000 0 000 0113347999999999999999
Q ss_pred hCCcEEEEcCCCCHHHHH-------HHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHh
Q 019702 199 HMPEVIIVDEIGTEAEAH-------ACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (337)
Q Consensus 199 ~~P~vlilDEp~~~ld~~-------~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~ 267 (337)
.+|++||+|||++++|.. .+.++.+ +.|||++||+.+++..+||+++ ++++|+++..|++++++..
T Consensus 165 ~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiiivsH~~~~~~~~~d~i~--~l~~G~i~~~~~~~~~~~~ 237 (252)
T PRK14256 165 VKPEVILMDEPASALDPISTLKIEELIEELKE-KYTIIIVTHNMQQAARVSDYTA--FFYMGDLVECGETKKIFTT 237 (252)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCcEEEEECCHHHHHhhCCEEE--EEECCEEEEeCCHHHHHhC
Confidence 999999999999999953 4455544 6899999999999989999999 9999999999999988764
No 171
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.95 E-value=1e-27 Score=217.46 Aligned_cols=159 Identities=19% Similarity=0.145 Sum_probs=116.9
Q ss_pred EeeEEEEECCcc--ccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCC----------------------C
Q 019702 97 IVGLTCRVGRAV--SGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ----------------------K 152 (337)
Q Consensus 97 i~~l~~r~~~~~--~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~----------------------~ 152 (337)
+++++++|+... ...++++++.+.+|++++|+||||||||||+++|+|+++|+.+ .
T Consensus 9 ~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 88 (228)
T PRK10584 9 VHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKLRAK 88 (228)
T ss_pred EeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHHHhh
Confidence 668999997521 1259999999999999999999999999999999999987632 1
Q ss_pred eEEEEcCCcccccCCC-------------Cccc----cc-------cc----chhccCCCcchhHHHHHHHHHhhCCcEE
Q 019702 153 RVVIVDTSNEIGGDGD-------------IPHS----AI-------GT----ARRMQVPEPSLQHKVMIEAVENHMPEVI 204 (337)
Q Consensus 153 ~i~~v~~~~ei~~~~~-------------~~~~----~~-------~~----~~~~~~~S~g~k~r~~ia~al~~~P~vl 204 (337)
.+.++.+...+..... .+.. .+ +. .+....+|+||+||++||+|++.+|++|
T Consensus 89 ~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al~~~p~ll 168 (228)
T PRK10584 89 HVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVL 168 (228)
T ss_pred eEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 2334433322111000 0000 00 00 0223457999999999999999999999
Q ss_pred EEcCCCCHHHH-------HHHHHHHhc-CCeEEEEEcCcchhHHhhchHHHHHhcCceEEEe
Q 019702 205 IVDEIGTEAEA-------HACRSIAER-GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 258 (337)
Q Consensus 205 ilDEp~~~ld~-------~~l~~~~~~-G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~ 258 (337)
|+||||+++|. +.+.+++++ |.|||++||+.++.. .||+++ ++++|++++.
T Consensus 169 llDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~-~~d~i~--~l~~g~i~~~ 227 (228)
T PRK10584 169 FADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAA-RCDRRL--RLVNGQLQEE 227 (228)
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH-hCCEEE--EEECCEEEec
Confidence 99999999995 345555544 899999999999875 499999 8999998653
No 172
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.95 E-value=1.7e-27 Score=220.35 Aligned_cols=166 Identities=13% Similarity=0.117 Sum_probs=125.3
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHcccc-----ccCC--------------------
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLS-----DEFQ-------------------- 151 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~-----~~~~-------------------- 151 (337)
+++++++|+... .++++++.+++|++++|+||||||||||+++|+|++. |+.+
T Consensus 16 ~~~l~~~~~~~~--il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~~ 93 (260)
T PRK10744 16 VRNLNFYYGKFH--ALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALLR 93 (260)
T ss_pred EEEEEEEeCCeE--EeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchHHHh
Confidence 568999997644 4999999999999999999999999999999999986 2211
Q ss_pred CeEEEEcCCcccccC-------C------CCccc----c-------cc--------cchhccCCCcchhHHHHHHHHHhh
Q 019702 152 KRVVIVDTSNEIGGD-------G------DIPHS----A-------IG--------TARRMQVPEPSLQHKVMIEAVENH 199 (337)
Q Consensus 152 ~~i~~v~~~~ei~~~-------~------~~~~~----~-------~~--------~~~~~~~~S~g~k~r~~ia~al~~ 199 (337)
.++.++.+...+... . ..... . ++ ..+....+|+||+||++||+|++.
T Consensus 94 ~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~ 173 (260)
T PRK10744 94 AKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIARGIAI 173 (260)
T ss_pred cceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHHHHHHHC
Confidence 123444433211100 0 00000 0 00 001234579999999999999999
Q ss_pred CCcEEEEcCCCCHHHHH-------HHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHh
Q 019702 200 MPEVIIVDEIGTEAEAH-------ACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (337)
Q Consensus 200 ~P~vlilDEp~~~ld~~-------~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~ 267 (337)
+|++||+||||+++|.. .+.++. .+.|||++||+.+.+..+||+++ ++++|+++..|++++++..
T Consensus 174 ~p~lllLDEPt~~LD~~~~~~l~~~L~~~~-~~~tiii~sH~~~~~~~~~d~i~--~l~~G~i~~~g~~~~~~~~ 245 (260)
T PRK10744 174 RPEVLLLDEPCSALDPISTGRIEELITELK-QDYTVVIVTHNMQQAARCSDYTA--FMYLGELIEFGNTDTIFTK 245 (260)
T ss_pred CCCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHHHHHHhCCEEE--EEECCEEEEeCCHHHHHhC
Confidence 99999999999999953 344443 47899999999999989999999 9999999999999988753
No 173
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=1.7e-27 Score=219.17 Aligned_cols=166 Identities=16% Similarity=0.129 Sum_probs=126.2
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccC----CCe-------------------
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEF----QKR------------------- 153 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~----~~~------------------- 153 (337)
+++++++|+... .++++++.+++|++++|+||||||||||+++|+|+++|+. .+.
T Consensus 7 ~~~l~~~~~~~~--~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 84 (252)
T PRK14272 7 AQDVNIYYGDKQ--AVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMR 84 (252)
T ss_pred EeeeEEEECCEE--eeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHhh
Confidence 679999997644 4999999999999999999999999999999999987531 222
Q ss_pred --EEEEcCCcccccC-------------CCCccc-c-----------cc--------cchhccCCCcchhHHHHHHHHHh
Q 019702 154 --VVIVDTSNEIGGD-------------GDIPHS-A-----------IG--------TARRMQVPEPSLQHKVMIEAVEN 198 (337)
Q Consensus 154 --i~~v~~~~ei~~~-------------~~~~~~-~-----------~~--------~~~~~~~~S~g~k~r~~ia~al~ 198 (337)
+.++.+...+... ...... . +. .......+|+||+||++||+|++
T Consensus 85 ~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~ 164 (252)
T PRK14272 85 RRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARALA 164 (252)
T ss_pred ceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHHHHHh
Confidence 3343332211110 000000 0 00 00123457999999999999999
Q ss_pred hCCcEEEEcCCCCHHHHH-------HHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHh
Q 019702 199 HMPEVIIVDEIGTEAEAH-------ACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (337)
Q Consensus 199 ~~P~vlilDEp~~~ld~~-------~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~ 267 (337)
.+|++|++|||++++|.. .+.+++ ++.|+|++||+.+.+..+||+++ +|++|+++..|++++++..
T Consensus 165 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~sH~~~~~~~~~d~i~--~l~~G~i~~~~~~~~~~~~ 237 (252)
T PRK14272 165 VEPEILLMDEPTSALDPASTARIEDLMTDLK-KVTTIIIVTHNMHQAARVSDTTS--FFLVGDLVEHGPTDQLFTN 237 (252)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHHHHHHhCCEEE--EEECCEEEEeCCHHHHHhC
Confidence 999999999999999953 344444 47999999999999999999999 9999999999999988653
No 174
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=1.7e-27 Score=217.25 Aligned_cols=165 Identities=15% Similarity=0.193 Sum_probs=126.2
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCC----------------eEEEEcCC
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK----------------RVVIVDTS 160 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~----------------~i~~v~~~ 160 (337)
+++++++|+.. .++++++.+.+|++++|+||||||||||+++|+|+++|+.+. .+.++.+.
T Consensus 3 ~~~l~~~~~~~---~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~~~~i~~~~q~ 79 (235)
T cd03299 3 VENLSKDWKEF---KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDISYVPQN 79 (235)
T ss_pred eEeEEEEeCCc---eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCChhHcCEEEEeec
Confidence 56899999753 499999999999999999999999999999999999887321 23444433
Q ss_pred cccccCCCC-------------ccc----ccc-c----------chhccCCCcchhHHHHHHHHHhhCCcEEEEcCCCCH
Q 019702 161 NEIGGDGDI-------------PHS----AIG-T----------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTE 212 (337)
Q Consensus 161 ~ei~~~~~~-------------~~~----~~~-~----------~~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~~ 212 (337)
..+.....+ ... .+. . .+....+|+||+||++||+|++.+|+++++||||++
T Consensus 80 ~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~g 159 (235)
T cd03299 80 YALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSA 159 (235)
T ss_pred CccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEECCCccc
Confidence 221110000 000 000 0 022345799999999999999999999999999999
Q ss_pred HHH-------HHHHHHHhc-CCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHH
Q 019702 213 AEA-------HACRSIAER-GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (337)
Q Consensus 213 ld~-------~~l~~~~~~-G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~ 266 (337)
+|. +.+.++..+ |.|+|++||+.+++..+||+++ ++++|+++..|+++++..
T Consensus 160 LD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~--~l~~G~i~~~~~~~~~~~ 219 (235)
T cd03299 160 LDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVA--IMLNGKLIQVGKPEEVFK 219 (235)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEE--EEECCEEEEecCHHHHHh
Confidence 995 334455443 8999999999999888999999 999999999999887765
No 175
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=1.9e-27 Score=218.85 Aligned_cols=166 Identities=15% Similarity=0.105 Sum_probs=126.9
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccC----CCe-------------------
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEF----QKR------------------- 153 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~----~~~------------------- 153 (337)
+++++++|+... .++++++.+.+|++++|+||||||||||+++|+|+++|+. .+.
T Consensus 7 ~~~l~~~~~~~~--il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~ 84 (251)
T PRK14249 7 IRGVNFFYHKHQ--VLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNLR 84 (251)
T ss_pred EEEEEEEECCee--EecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHHhh
Confidence 568999997644 4999999999999999999999999999999999998752 122
Q ss_pred --EEEEcCCcccccC------------CCCc-c----ccc-------c--------cchhccCCCcchhHHHHHHHHHhh
Q 019702 154 --VVIVDTSNEIGGD------------GDIP-H----SAI-------G--------TARRMQVPEPSLQHKVMIEAVENH 199 (337)
Q Consensus 154 --i~~v~~~~ei~~~------------~~~~-~----~~~-------~--------~~~~~~~~S~g~k~r~~ia~al~~ 199 (337)
+.++.+...+... .... . ..+ + ..+....+|+||+||+++|+|++.
T Consensus 85 ~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~ 164 (251)
T PRK14249 85 KRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLAI 164 (251)
T ss_pred ceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhc
Confidence 3344333221110 0000 0 000 0 002223479999999999999999
Q ss_pred CCcEEEEcCCCCHHHH-------HHHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHh
Q 019702 200 MPEVIIVDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (337)
Q Consensus 200 ~P~vlilDEp~~~ld~-------~~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~ 267 (337)
+|++||+||||+++|. +.+.++ .+|.|||++||+.+.+..+||+++ ++++|+++..|++++++..
T Consensus 165 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~~~~tilivsh~~~~~~~~~d~i~--~l~~G~i~~~~~~~~~~~~ 236 (251)
T PRK14249 165 EPEVILMDEPCSALDPVSTMRIEELMQEL-KQNYTIAIVTHNMQQAARASDWTG--FLLTGDLVEYGRTGEIFSR 236 (251)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHhhCCEEE--EEeCCeEEEeCCHHHHHhC
Confidence 9999999999999995 334444 358999999999999999999999 9999999999999988754
No 176
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.95 E-value=1.4e-27 Score=208.63 Aligned_cols=147 Identities=18% Similarity=0.137 Sum_probs=114.4
Q ss_pred eEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEcCCcccccCCCCcccccccch
Q 019702 99 GLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTAR 178 (337)
Q Consensus 99 ~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~~~~ei~~~~~~~~~~~~~~~ 178 (337)
+++++|+.... +.++ +.+++|++++|+||||||||||+++|+|+++|+ .+.|.+-. ..+++. ++
T Consensus 5 ~l~~~~~~~~~--l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~-~G~i~~~g--~~i~~~---~q------- 68 (177)
T cd03222 5 DCVKRYGVFFL--LVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPN-GDNDEWDG--ITPVYK---PQ------- 68 (177)
T ss_pred CeEEEECCEEE--EccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCCCC-CcEEEECC--EEEEEE---cc-------
Confidence 78999987654 6664 789999999999999999999999999999987 45554321 112211 11
Q ss_pred hccCCCcchhHHHHHHHHHhhCCcEEEEcCCCCHHHH-------HHHHHHHhcC-CeEEEEEcCcchhHHhhchHHHHHh
Q 019702 179 RMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEA-------HACRSIAERG-VMLIGTAHGEWLENIIKNPILSDLI 250 (337)
Q Consensus 179 ~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~~ld~-------~~l~~~~~~G-~tvi~t~H~~~~~~~~~d~v~~~ll 250 (337)
...+|+||+||+++|++++.+|+++++|||++++|. +.+.++++++ .|+|++||+.+++..+||+++ ++
T Consensus 69 -~~~LSgGq~qrv~laral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~--~l 145 (177)
T cd03222 69 -YIDLSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIH--VF 145 (177)
T ss_pred -cCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHhCCEEE--EE
Confidence 111899999999999999999999999999999995 3455555564 899999999999999999999 78
Q ss_pred cCceEEEe--cCHHHH
Q 019702 251 GGVDTVTL--GDEEAR 264 (337)
Q Consensus 251 ~~G~iv~~--g~~~~~ 264 (337)
+++-.+.. |.|...
T Consensus 146 ~~~~~~~~~~~~~~~~ 161 (177)
T cd03222 146 EGEPGVYGIASQPKGT 161 (177)
T ss_pred cCCCccceeccCCcch
Confidence 76654433 666543
No 177
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=2.6e-27 Score=221.28 Aligned_cols=167 Identities=16% Similarity=0.233 Sum_probs=127.6
Q ss_pred EeeEEEEECCc-cccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCe-------------------EEE
Q 019702 97 IVGLTCRVGRA-VSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKR-------------------VVI 156 (337)
Q Consensus 97 i~~l~~r~~~~-~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~-------------------i~~ 156 (337)
+++++++|+.. ....++++++.+.+|++++|+|+||||||||+++|+|+++|+. +. +.+
T Consensus 7 ~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~-G~i~~~g~~i~~~~~~~~~~~i~~ 85 (277)
T PRK13642 7 VENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFE-GKVKIDGELLTAENVWNLRRKIGM 85 (277)
T ss_pred EEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCC-CEEEECCEECCcCCHHHHhcceEE
Confidence 67999999743 2235999999999999999999999999999999999998873 32 334
Q ss_pred EcCCcc--cccC------------CCCccccc-----------cc----chhccCCCcchhHHHHHHHHHhhCCcEEEEc
Q 019702 157 VDTSNE--IGGD------------GDIPHSAI-----------GT----ARRMQVPEPSLQHKVMIEAVENHMPEVIIVD 207 (337)
Q Consensus 157 v~~~~e--i~~~------------~~~~~~~~-----------~~----~~~~~~~S~g~k~r~~ia~al~~~P~vlilD 207 (337)
+.+... +... ........ +. .+....+|+||+||++||+|++.+|++||+|
T Consensus 86 v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p~llllD 165 (277)
T PRK13642 86 VFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILD 165 (277)
T ss_pred EEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 433321 1000 00000000 00 0223457999999999999999999999999
Q ss_pred CCCCHHHH-------HHHHHHHhc-CCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHh
Q 019702 208 EIGTEAEA-------HACRSIAER-GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (337)
Q Consensus 208 Ep~~~ld~-------~~l~~~~~~-G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~ 267 (337)
|||+++|. +.+.++.++ |.|||++||+++++. .||+++ ++++|+++..|++++++..
T Consensus 166 EPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~-~~d~i~--~l~~G~i~~~g~~~~~~~~ 230 (277)
T PRK13642 166 ESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAA-SSDRIL--VMKAGEIIKEAAPSELFAT 230 (277)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH-hCCEEE--EEECCEEEEeCCHHHHhcC
Confidence 99999995 345555554 999999999999986 599999 9999999999999998764
No 178
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=1e-27 Score=208.44 Aligned_cols=150 Identities=17% Similarity=0.223 Sum_probs=111.4
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEcCCc----------ccccC
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSN----------EIGGD 166 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~~~~----------ei~~~ 166 (337)
+++++++|+......++++++.+++|++++|+||||||||||+++|+|+++|. .+.+.+-.... .+++.
T Consensus 3 ~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~-~G~i~~~g~~~~~~~~~~~~~~i~~~ 81 (171)
T cd03228 3 FKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPT-SGEILIDGVDLRDLDLESLRKNIAYV 81 (171)
T ss_pred EEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC-CCEEEECCEEhhhcCHHHHHhhEEEE
Confidence 56899999764223499999999999999999999999999999999999887 45554322110 01111
Q ss_pred CCCccc-ccccchhc-cCCCcchhHHHHHHHHHhhCCcEEEEcCCCCHHHHH-------HHHHHHhcCCeEEEEEcCcch
Q 019702 167 GDIPHS-AIGTARRM-QVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAH-------ACRSIAERGVMLIGTAHGEWL 237 (337)
Q Consensus 167 ~~~~~~-~~~~~~~~-~~~S~g~k~r~~ia~al~~~P~vlilDEp~~~ld~~-------~l~~~~~~G~tvi~t~H~~~~ 237 (337)
++. .+....-. .++|+||+||+++|+|++.+|++|++||||+++|.. .+.++. ++.|+|++||+.++
T Consensus 82 ---~~~~~~~~~t~~e~lLS~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~ 157 (171)
T cd03228 82 ---PQDPFLFSGTIRENILSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALA-KGKTVIVIAHRLST 157 (171)
T ss_pred ---cCCchhccchHHHHhhCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhc-CCCEEEEEecCHHH
Confidence 111 00000001 128999999999999999999999999999999953 333443 47899999999999
Q ss_pred hHHhhchHHHHHhcCce
Q 019702 238 ENIIKNPILSDLIGGVD 254 (337)
Q Consensus 238 ~~~~~d~v~~~ll~~G~ 254 (337)
+.. ||+++ ++++|+
T Consensus 158 ~~~-~d~~~--~l~~g~ 171 (171)
T cd03228 158 IRD-ADRII--VLDDGR 171 (171)
T ss_pred HHh-CCEEE--EEcCCC
Confidence 877 99998 777663
No 179
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=1.4e-27 Score=216.60 Aligned_cols=164 Identities=15% Similarity=0.171 Sum_probs=123.6
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCe-------------------EEEE
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKR-------------------VVIV 157 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~-------------------i~~v 157 (337)
+++++++|+... ..++++++.+.+|++++|+|||||||||||++|+|+++|.. +. +.++
T Consensus 5 ~~~l~~~~~~~~-~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~-G~i~~~g~~~~~~~~~~~~~~i~~~ 82 (229)
T cd03254 5 FENVNFSYDEKK-PVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQK-GQILIDGIDIRDISRKSLRSMIGVV 82 (229)
T ss_pred EEEEEEecCCCC-ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCC-CEEEECCEeHHHcCHHHHhhhEEEe
Confidence 668999997422 24999999999999999999999999999999999998863 33 3344
Q ss_pred cCCcccccC-------C---CCccccc-------cc---c------------hhccCCCcchhHHHHHHHHHhhCCcEEE
Q 019702 158 DTSNEIGGD-------G---DIPHSAI-------GT---A------------RRMQVPEPSLQHKVMIEAVENHMPEVII 205 (337)
Q Consensus 158 ~~~~ei~~~-------~---~~~~~~~-------~~---~------------~~~~~~S~g~k~r~~ia~al~~~P~vli 205 (337)
++...+... . ......+ +. . .....+|+||+||++||+|++.+|++||
T Consensus 83 ~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~lll 162 (229)
T cd03254 83 LQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILI 162 (229)
T ss_pred cCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCEEE
Confidence 333221100 0 0000000 00 0 1135689999999999999999999999
Q ss_pred EcCCCCHHHHH-------HHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHH
Q 019702 206 VDEIGTEAEAH-------ACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (337)
Q Consensus 206 lDEp~~~ld~~-------~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~ 266 (337)
+|||++++|.. .+..+. +|.|||++||+.+++. .||+++ ++++|+++..|+.+++..
T Consensus 163 lDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~~~-~~d~i~--~l~~g~~~~~~~~~~~~~ 226 (229)
T cd03254 163 LDEATSNIDTETEKLIQEALEKLM-KGRTSIIIAHRLSTIK-NADKIL--VLDDGKIIEEGTHDELLA 226 (229)
T ss_pred EeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCHHHHh-hCCEEE--EEeCCeEEEeCCHHHHHh
Confidence 99999999953 344443 4899999999999886 599999 999999999998887754
No 180
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.95 E-value=8.2e-28 Score=242.58 Aligned_cols=166 Identities=15% Similarity=0.144 Sum_probs=128.7
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCC-------------------CeEEEE
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ-------------------KRVVIV 157 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~-------------------~~i~~v 157 (337)
+++++++|+...+ ++++++.+++|++++|+||||||||||+++|+|+++|+.+ ..+.++
T Consensus 8 ~~~l~~~~~~~~i--l~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v 85 (510)
T PRK09700 8 MAGIGKSFGPVHA--LKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGIGII 85 (510)
T ss_pred EeeeEEEcCCeEE--eeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCeEEE
Confidence 6799999976544 9999999999999999999999999999999999987632 124444
Q ss_pred cCCcccccC---------CCCc-----c------ccc-----------c----cchhccCCCcchhHHHHHHHHHhhCCc
Q 019702 158 DTSNEIGGD---------GDIP-----H------SAI-----------G----TARRMQVPEPSLQHKVMIEAVENHMPE 202 (337)
Q Consensus 158 ~~~~ei~~~---------~~~~-----~------~~~-----------~----~~~~~~~~S~g~k~r~~ia~al~~~P~ 202 (337)
.+...+... ...+ . ... + ..+....+|+||+||++||+|++.+|+
T Consensus 86 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~al~~~p~ 165 (510)
T PRK09700 86 YQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAK 165 (510)
T ss_pred eecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCC
Confidence 443221100 0000 0 000 0 012234579999999999999999999
Q ss_pred EEEEcCCCCHHHH-------HHHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHH
Q 019702 203 VIIVDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (337)
Q Consensus 203 vlilDEp~~~ld~-------~~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~ 266 (337)
+||+||||+++|. +.+.+++++|.|||++||+.+++..+||+++ ++++|+++..|+++++..
T Consensus 166 lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~--~l~~G~i~~~g~~~~~~~ 234 (510)
T PRK09700 166 VIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYT--VMKDGSSVCSGMVSDVSN 234 (510)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEE--EEECCEEeeecchhhCCH
Confidence 9999999999995 3456666679999999999999999999999 999999999999987643
No 181
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=1.4e-27 Score=220.84 Aligned_cols=166 Identities=11% Similarity=0.133 Sum_probs=125.8
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccc--c--CCCe-------------------
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSD--E--FQKR------------------- 153 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~--~--~~~~------------------- 153 (337)
+++++++|+... .++++++.+++|++++|+||||||||||+++|+|++.| . ..+.
T Consensus 15 i~~l~~~~~~~~--~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~ 92 (259)
T PRK14274 15 INGMNLWYGQHH--ALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELR 92 (259)
T ss_pred EeeEEEEECCee--eEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHHHh
Confidence 779999997644 49999999999999999999999999999999999863 1 1222
Q ss_pred --EEEEcCCcccccC------------CCC-ccc----c-------ccc--------chhccCCCcchhHHHHHHHHHhh
Q 019702 154 --VVIVDTSNEIGGD------------GDI-PHS----A-------IGT--------ARRMQVPEPSLQHKVMIEAVENH 199 (337)
Q Consensus 154 --i~~v~~~~ei~~~------------~~~-~~~----~-------~~~--------~~~~~~~S~g~k~r~~ia~al~~ 199 (337)
+.++.+...+... ... ... . ++. ......+|+||+||++||++++.
T Consensus 93 ~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~laral~~ 172 (259)
T PRK14274 93 KNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIARALAT 172 (259)
T ss_pred hceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHhc
Confidence 3344333211100 000 000 0 000 01223479999999999999999
Q ss_pred CCcEEEEcCCCCHHHH-------HHHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHh
Q 019702 200 MPEVIIVDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (337)
Q Consensus 200 ~P~vlilDEp~~~ld~-------~~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~ 267 (337)
+|+++++||||+++|. +.+.++.+ +.|+|++||+.+.+..+||+++ ++++|+++..|++++++.+
T Consensus 173 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivtH~~~~~~~~~d~i~--~l~~G~i~~~g~~~~~~~~ 244 (259)
T PRK14274 173 NPDVLLMDEPTSALDPVSTRKIEELILKLKE-KYTIVIVTHNMQQAARVSDQTA--FFYMGELVECNDTNKMFSN 244 (259)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHHHHHHhCCEEE--EEECCEEEEECCHHHHhhC
Confidence 9999999999999995 33444443 7899999999999999999999 9999999999999998754
No 182
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=1.3e-27 Score=214.88 Aligned_cols=153 Identities=14% Similarity=0.152 Sum_probs=115.8
Q ss_pred eEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeE-----------------------E
Q 019702 99 GLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRV-----------------------V 155 (337)
Q Consensus 99 ~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i-----------------------~ 155 (337)
+|+++|++.. + ++++.+++ ++++|+||||||||||+++|+|+++|+. +.+ .
T Consensus 5 ~l~~~~~~~~---~-~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~-G~i~~~g~~~~~~~~~~~~~~~~~~i~ 78 (214)
T cd03297 5 DIEKRLPDFT---L-KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDG-GTIVLNGTVLFDSRKKINLPPQQRKIG 78 (214)
T ss_pred eeeEecCCee---e-CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCC-ceEEECCEecccccchhhhhhHhhcEE
Confidence 7999998753 3 99999999 9999999999999999999999998863 333 3
Q ss_pred EEcCCcccccCCCCccc---------------ccc-c----------chhccCCCcchhHHHHHHHHHhhCCcEEEEcCC
Q 019702 156 IVDTSNEIGGDGDIPHS---------------AIG-T----------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEI 209 (337)
Q Consensus 156 ~v~~~~ei~~~~~~~~~---------------~~~-~----------~~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp 209 (337)
++++...+.....+..+ .+. . ......+|+||+||++||+|++.+|+++|+|||
T Consensus 79 ~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP 158 (214)
T cd03297 79 LVFQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEP 158 (214)
T ss_pred EEecCCccCCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 33332211100000000 000 0 022345799999999999999999999999999
Q ss_pred CCHHHH-------HHHHHHHhc-CCeEEEEEcCcchhHHhhchHHHHHhcCceEEEec
Q 019702 210 GTEAEA-------HACRSIAER-GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLG 259 (337)
Q Consensus 210 ~~~ld~-------~~l~~~~~~-G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g 259 (337)
|+++|. +.+.+++++ |.|+|++||+.+++..+||+++ ++++|+++..|
T Consensus 159 t~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~--~l~~G~i~~~g 214 (214)
T cd03297 159 FSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIV--VMEDGRLQYIG 214 (214)
T ss_pred cccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEE--EEECCEEEecC
Confidence 999995 345555554 8999999999999999999999 99999988764
No 183
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.95 E-value=2.2e-27 Score=238.30 Aligned_cols=165 Identities=18% Similarity=0.130 Sum_probs=127.7
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEE-------------------E
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVI-------------------V 157 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~-------------------v 157 (337)
+++++++|+... .++++++.+++|++++|+||||||||||+++|+|+++|+. +.|.+ +
T Consensus 6 ~~~l~~~~~~~~--il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~-G~i~~~~~~~~~~~~~~~~~~i~~~ 82 (490)
T PRK10938 6 ISQGTFRLSDTK--TLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLS-GERQSQFSHITRLSFEQLQKLVSDE 82 (490)
T ss_pred EEeEEEEcCCee--ecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCC-ceEEECCcccccCCHHHHHHHhcee
Confidence 679999997654 4999999999999999999999999999999999998873 33432 1
Q ss_pred cCCccccc--------CCCCccc---------cc-------cc----chhccCCCcchhHHHHHHHHHhhCCcEEEEcCC
Q 019702 158 DTSNEIGG--------DGDIPHS---------AI-------GT----ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEI 209 (337)
Q Consensus 158 ~~~~ei~~--------~~~~~~~---------~~-------~~----~~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp 209 (337)
.+...... ...+.+. .+ +. .+....+|+||+||++||+|++.+|++|++|||
T Consensus 83 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEP 162 (490)
T PRK10938 83 WQRNNTDMLSPGEDDTGRTTAEIIQDEVKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEP 162 (490)
T ss_pred ccCcchhhcccchhhccccHHHhcccchhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 11110000 0000000 00 00 123456799999999999999999999999999
Q ss_pred CCHHHH-------HHHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHH
Q 019702 210 GTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (337)
Q Consensus 210 ~~~ld~-------~~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~ 266 (337)
|+++|. +.+.+++++|.|||++||+.+.+..+||+++ ++++|+++..|+++++..
T Consensus 163 t~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~--~l~~G~i~~~~~~~~~~~ 224 (490)
T PRK10938 163 FDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAG--VLADCTLAETGEREEILQ 224 (490)
T ss_pred cccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEE--EEECCEEEEeCCHHHHhc
Confidence 999995 4455666678999999999999999999999 999999999999988754
No 184
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=1.4e-27 Score=222.38 Aligned_cols=168 Identities=17% Similarity=0.236 Sum_probs=125.9
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCC------------------CeEEEEc
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ------------------KRVVIVD 158 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~------------------~~i~~v~ 158 (337)
+++++++|+......++++++.+.+|++++|+||||||||||+++|+|+++|+.+ ..+.++.
T Consensus 10 ~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~ 89 (271)
T PRK13632 10 VENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIGIIF 89 (271)
T ss_pred EEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcceEEEE
Confidence 6789999963222359999999999999999999999999999999999987632 1234443
Q ss_pred CCcc--cccC-------C-----CCcccc----c-------cc----chhccCCCcchhHHHHHHHHHhhCCcEEEEcCC
Q 019702 159 TSNE--IGGD-------G-----DIPHSA----I-------GT----ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEI 209 (337)
Q Consensus 159 ~~~e--i~~~-------~-----~~~~~~----~-------~~----~~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp 209 (337)
+... +... . .+.... + +. .+....+|+||+||++||+|++.+|++|++|||
T Consensus 90 q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEP 169 (271)
T PRK13632 90 QNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDES 169 (271)
T ss_pred eCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 3321 1000 0 000000 0 00 022345799999999999999999999999999
Q ss_pred CCHHHH-------HHHHHHHhc-CCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHh
Q 019702 210 GTEAEA-------HACRSIAER-GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (337)
Q Consensus 210 ~~~ld~-------~~l~~~~~~-G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~ 267 (337)
++++|. +.+.++.++ +.|+|++||+.+.+. .||+++ ++++|+++..|+++++...
T Consensus 170 ~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~-~~d~v~--~l~~G~i~~~g~~~~~~~~ 232 (271)
T PRK13632 170 TSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAI-LADKVI--VFSEGKLIAQGKPKEILNN 232 (271)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHh-hCCEEE--EEECCEEEEecCHHHHhcC
Confidence 999995 345555555 589999999999885 799999 9999999999999887654
No 185
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=2.5e-27 Score=218.11 Aligned_cols=165 Identities=14% Similarity=0.094 Sum_probs=125.9
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccc-----cCCCe------------------
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSD-----EFQKR------------------ 153 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~-----~~~~~------------------ 153 (337)
+++++++|+... .++++++.+.+|++++|+||||||||||+++|+|+++| + .+.
T Consensus 7 ~~~l~~~~~~~~--~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~-~G~i~~~g~~i~~~~~~~~~~ 83 (251)
T PRK14270 7 SKNLNLWYGEKQ--ALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKI-EGEVLLDGKNIYDKDVDVVEL 83 (251)
T ss_pred EEEeEEEECCee--eeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCC-ccEEEECCEecccccccHHHH
Confidence 678999997544 49999999999999999999999999999999999864 2 232
Q ss_pred ---EEEEcCCcccccC------------CCC-cccc-----------cc--------cchhccCCCcchhHHHHHHHHHh
Q 019702 154 ---VVIVDTSNEIGGD------------GDI-PHSA-----------IG--------TARRMQVPEPSLQHKVMIEAVEN 198 (337)
Q Consensus 154 ---i~~v~~~~ei~~~------------~~~-~~~~-----------~~--------~~~~~~~~S~g~k~r~~ia~al~ 198 (337)
+.++.+...+... ... .... ++ .......+|+||+||++||+|++
T Consensus 84 ~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~ 163 (251)
T PRK14270 84 RKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTIA 163 (251)
T ss_pred HhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHh
Confidence 3344333221100 000 0000 00 01123457999999999999999
Q ss_pred hCCcEEEEcCCCCHHHHH-------HHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHh
Q 019702 199 HMPEVIIVDEIGTEAEAH-------ACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (337)
Q Consensus 199 ~~P~vlilDEp~~~ld~~-------~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~ 267 (337)
.+|++||+||||+++|.. .+.++.+ +.|+|++||+.+++..+||+++ ++++|+++..|++++++..
T Consensus 164 ~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~~~~~~~d~v~--~l~~G~i~~~~~~~~~~~~ 236 (251)
T PRK14270 164 VKPDVILMDEPTSALDPISTLKIEDLMVELKK-EYTIVIVTHNMQQASRVSDYTA--FFLMGDLIEFNKTEKIFLE 236 (251)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEEcCHHHHHHhcCEEE--EEECCeEEEeCCHHHHhcC
Confidence 999999999999999953 3444444 6899999999999999999999 9999999999999998754
No 186
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.95 E-value=9e-28 Score=241.82 Aligned_cols=165 Identities=15% Similarity=0.151 Sum_probs=127.0
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCC-------------------CeEEEE
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ-------------------KRVVIV 157 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~-------------------~~i~~v 157 (337)
+++++++|+.... ++++++.+.+|++++|+|||||||||||++|+|+++|+.+ ..+.++
T Consensus 7 ~~~l~~~~~~~~~--l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v 84 (501)
T PRK10762 7 LKGIDKAFPGVKA--LSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGIGII 84 (501)
T ss_pred EeeeEEEeCCeEE--eeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEE
Confidence 6799999976544 9999999999999999999999999999999999988632 123444
Q ss_pred cCCcccccC---------C-C-------Cccc----ccc-------c----chhccCCCcchhHHHHHHHHHhhCCcEEE
Q 019702 158 DTSNEIGGD---------G-D-------IPHS----AIG-------T----ARRMQVPEPSLQHKVMIEAVENHMPEVII 205 (337)
Q Consensus 158 ~~~~ei~~~---------~-~-------~~~~----~~~-------~----~~~~~~~S~g~k~r~~ia~al~~~P~vli 205 (337)
.+...+... . . .... .+. . .+....+|+||+||++||+||+.+|++||
T Consensus 85 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lll 164 (501)
T PRK10762 85 HQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESKVII 164 (501)
T ss_pred EcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 433211100 0 0 0000 000 0 02234579999999999999999999999
Q ss_pred EcCCCCHHHH-------HHHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHH
Q 019702 206 VDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARA 265 (337)
Q Consensus 206 lDEp~~~ld~-------~~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~ 265 (337)
|||||+++|. +.+.++++.|.|||++||+.+++..+||+++ ++++|+++..|+++++.
T Consensus 165 LDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~--~l~~G~i~~~~~~~~~~ 229 (501)
T PRK10762 165 MDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVT--VFRDGQFIAEREVADLT 229 (501)
T ss_pred EeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEE--EEeCCEEEEecCcCcCC
Confidence 9999999995 3355666678999999999999999999999 99999999999887653
No 187
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=8.8e-28 Score=242.15 Aligned_cols=164 Identities=17% Similarity=0.198 Sum_probs=127.2
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccc--cCCCe--------------------E
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSD--EFQKR--------------------V 154 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~--~~~~~--------------------i 154 (337)
+++++++|++.. .++++++.+++|++++|+||||||||||+++|+|+++| + .+. +
T Consensus 8 ~~nl~~~~~~~~--il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~-~G~i~~~g~~~~~~~~~~~~~~~i 84 (506)
T PRK13549 8 MKNITKTFGGVK--ALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTY-EGEIIFEGEELQASNIRDTERAGI 84 (506)
T ss_pred EeeeEEEeCCeE--eecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCC-CeEEEECCEECCCCCHHHHHHCCe
Confidence 679999997654 49999999999999999999999999999999999986 3 222 4
Q ss_pred EEEcCCcccccC----------CC------Cccc----cc-------cc----chhccCCCcchhHHHHHHHHHhhCCcE
Q 019702 155 VIVDTSNEIGGD----------GD------IPHS----AI-------GT----ARRMQVPEPSLQHKVMIEAVENHMPEV 203 (337)
Q Consensus 155 ~~v~~~~ei~~~----------~~------~~~~----~~-------~~----~~~~~~~S~g~k~r~~ia~al~~~P~v 203 (337)
.++.+...+... .. .... .+ +. .+....+|+||+||++||+|++.+|++
T Consensus 85 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~l 164 (506)
T PRK13549 85 AIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQARL 164 (506)
T ss_pred EEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCE
Confidence 444443221100 00 0000 00 00 122345799999999999999999999
Q ss_pred EEEcCCCCHHHH-------HHHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHH
Q 019702 204 IIVDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARA 265 (337)
Q Consensus 204 lilDEp~~~ld~-------~~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~ 265 (337)
||+||||+++|. +.+.+++++|.|||++||+.+++..+||+++ ++++|+++..|+++++.
T Consensus 165 llLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~--~l~~G~i~~~~~~~~~~ 231 (506)
T PRK13549 165 LILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTIC--VIRDGRHIGTRPAAGMT 231 (506)
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEE--EEECCEEeeecccccCC
Confidence 999999999994 4455666679999999999999999999999 99999999999987653
No 188
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.95 E-value=2.3e-27 Score=218.17 Aligned_cols=166 Identities=14% Similarity=0.139 Sum_probs=125.1
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccc--c--CCCe-------------------
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSD--E--FQKR------------------- 153 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~--~--~~~~------------------- 153 (337)
+++++++|+... .++++++.+++|++++|+||||||||||+++|+|++++ . ..+.
T Consensus 6 ~~~l~~~~~~~~--~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 83 (250)
T PRK14240 6 VKDLDLFYGDFQ--ALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLR 83 (250)
T ss_pred EEEEEEEECCce--eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHHh
Confidence 679999997644 49999999999999999999999999999999998752 1 1222
Q ss_pred --EEEEcCCcccccC------------CCC-cccc-----------cc--------cchhccCCCcchhHHHHHHHHHhh
Q 019702 154 --VVIVDTSNEIGGD------------GDI-PHSA-----------IG--------TARRMQVPEPSLQHKVMIEAVENH 199 (337)
Q Consensus 154 --i~~v~~~~ei~~~------------~~~-~~~~-----------~~--------~~~~~~~~S~g~k~r~~ia~al~~ 199 (337)
+.++.+...+... ... +... ++ ..+....+|+||+||++||+|++.
T Consensus 84 ~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~ 163 (250)
T PRK14240 84 KRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARALAV 163 (250)
T ss_pred ccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHHHHhc
Confidence 3444333221100 000 0000 00 001234579999999999999999
Q ss_pred CCcEEEEcCCCCHHHHH-------HHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHh
Q 019702 200 MPEVIIVDEIGTEAEAH-------ACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (337)
Q Consensus 200 ~P~vlilDEp~~~ld~~-------~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~ 267 (337)
+|++|++||||+++|.. .+.++. ++.|||++||+.+.+..+||+++ ++++|+++..|++++++..
T Consensus 164 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~sH~~~~~~~~~d~v~--~l~~G~i~~~~~~~~~~~~ 235 (250)
T PRK14240 164 EPEVLLMDEPTSALDPISTLKIEELIQELK-KDYTIVIVTHNMQQASRISDKTA--FFLNGEIVEFGDTVDLFTN 235 (250)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEEeCHHHHHhhCCEEE--EEECCEEEEeCCHHHHHhC
Confidence 99999999999999953 344443 47899999999999989999999 9999999999999987653
No 189
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.95 E-value=2e-27 Score=221.38 Aligned_cols=166 Identities=16% Similarity=0.199 Sum_probs=126.1
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccC-------CCeE---------------
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEF-------QKRV--------------- 154 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~-------~~~i--------------- 154 (337)
+++++++|..... ++++++.+.+|++++|+||||||||||+++|+|+++|+. .+.|
T Consensus 4 ~~nl~~~~~~~~i--l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 81 (272)
T PRK13547 4 ADHLHVARRHRAI--LRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRL 81 (272)
T ss_pred EEEEEEEECCEeE--EecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHHH
Confidence 6789999976544 999999999999999999999999999999999998751 2222
Q ss_pred ----EEEcCCcccccC---------CCCcc---------c---cccc-----------chhccCCCcchhHHHHHHHHHh
Q 019702 155 ----VIVDTSNEIGGD---------GDIPH---------S---AIGT-----------ARRMQVPEPSLQHKVMIEAVEN 198 (337)
Q Consensus 155 ----~~v~~~~ei~~~---------~~~~~---------~---~~~~-----------~~~~~~~S~g~k~r~~ia~al~ 198 (337)
.++++.....+. ...+. . .... .+....+|+||+||+++|+|++
T Consensus 82 ~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~ 161 (272)
T PRK13547 82 ARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARVLA 161 (272)
T ss_pred HhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHh
Confidence 333332211000 00000 0 0000 0223457999999999999999
Q ss_pred ---------hCCcEEEEcCCCCHHHH-------HHHHHHHhc-CCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCH
Q 019702 199 ---------HMPEVIIVDEIGTEAEA-------HACRSIAER-GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDE 261 (337)
Q Consensus 199 ---------~~P~vlilDEp~~~ld~-------~~l~~~~~~-G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~ 261 (337)
.+|++||+||||+++|. +.+.++.++ |.|||++||+.+++..+||+++ ++++|+++..|++
T Consensus 162 ~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~--~l~~G~i~~~g~~ 239 (272)
T PRK13547 162 QLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIA--MLADGAIVAHGAP 239 (272)
T ss_pred ccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEE--EEECCeEEEecCH
Confidence 49999999999999995 345555555 8999999999999988999999 9999999999999
Q ss_pred HHHHH
Q 019702 262 EARAR 266 (337)
Q Consensus 262 ~~~~~ 266 (337)
+++..
T Consensus 240 ~~~~~ 244 (272)
T PRK13547 240 ADVLT 244 (272)
T ss_pred HHHcC
Confidence 88754
No 190
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.95 E-value=2.5e-27 Score=218.04 Aligned_cols=166 Identities=14% Similarity=0.121 Sum_probs=125.3
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHcccc--cc--CCC--------------------
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLS--DE--FQK-------------------- 152 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~--~~--~~~-------------------- 152 (337)
+++++++|+... .++++++.+++|++++|+||||||||||+++|+|+.. |+ ..+
T Consensus 8 ~~~l~~~~~~~~--~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~ 85 (252)
T PRK14239 8 VSDLSVYYNKKK--ALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLR 85 (252)
T ss_pred EEeeEEEECCee--eeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHhhh
Confidence 678999997544 4999999999999999999999999999999999853 42 122
Q ss_pred -eEEEEcCCcccccC------------CCCc-ccc-----------cc--------cchhccCCCcchhHHHHHHHHHhh
Q 019702 153 -RVVIVDTSNEIGGD------------GDIP-HSA-----------IG--------TARRMQVPEPSLQHKVMIEAVENH 199 (337)
Q Consensus 153 -~i~~v~~~~ei~~~------------~~~~-~~~-----------~~--------~~~~~~~~S~g~k~r~~ia~al~~ 199 (337)
.+.++.+...+... .... ... ++ ..+....+|+||+||+++|+|++.
T Consensus 86 ~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~ 165 (252)
T PRK14239 86 KEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVLAT 165 (252)
T ss_pred hcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHHHHHhc
Confidence 24444433221100 0000 000 00 001234579999999999999999
Q ss_pred CCcEEEEcCCCCHHHHH-------HHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHh
Q 019702 200 MPEVIIVDEIGTEAEAH-------ACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (337)
Q Consensus 200 ~P~vlilDEp~~~ld~~-------~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~ 267 (337)
+|++||+||||+++|.. .+.++. ++.|||++||+.+++..+||+++ ++++|+++..|++++++..
T Consensus 166 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tii~~sH~~~~~~~~~d~i~--~l~~G~i~~~g~~~~~~~~ 237 (252)
T PRK14239 166 SPKIILLDEPTSALDPISAGKIEETLLGLK-DDYTMLLVTRSMQQASRISDRTG--FFLDGDLIEYNDTKQMFMN 237 (252)
T ss_pred CCCEEEEcCCccccCHHHHHHHHHHHHHHh-hCCeEEEEECCHHHHHHhCCEEE--EEECCEEEEeCCHHHHHhC
Confidence 99999999999999953 344443 36899999999999989999999 9999999999999998754
No 191
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.95 E-value=2.3e-27 Score=220.42 Aligned_cols=165 Identities=16% Similarity=0.128 Sum_probs=125.4
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccc-----cCCCe------------------
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSD-----EFQKR------------------ 153 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~-----~~~~~------------------ 153 (337)
+++++++|+... .++++++.+++|++++|+||||||||||+++|+|+++| + .+.
T Consensus 22 ~~nl~~~~~~~~--il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~-~G~I~~~g~~i~~~~~~~~~~ 98 (267)
T PRK14235 22 ARDVSVFYGEKQ--ALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRV-TGKITLDGEDIYDPRLDVVEL 98 (267)
T ss_pred EEeEEEEECCEE--EEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCC-ceEEEECCEECcccccchHHH
Confidence 668999997644 49999999999999999999999999999999999874 3 233
Q ss_pred ---EEEEcCCcccccC------------CCC--cccc-----------ccc--------chhccCCCcchhHHHHHHHHH
Q 019702 154 ---VVIVDTSNEIGGD------------GDI--PHSA-----------IGT--------ARRMQVPEPSLQHKVMIEAVE 197 (337)
Q Consensus 154 ---i~~v~~~~ei~~~------------~~~--~~~~-----------~~~--------~~~~~~~S~g~k~r~~ia~al 197 (337)
+.++.+...+... ... .... ++. ......+|+||+||++||+|+
T Consensus 99 ~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral 178 (267)
T PRK14235 99 RARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIARAI 178 (267)
T ss_pred hhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHH
Confidence 3333332211100 000 0000 000 012345799999999999999
Q ss_pred hhCCcEEEEcCCCCHHHHH-------HHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHh
Q 019702 198 NHMPEVIIVDEIGTEAEAH-------ACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (337)
Q Consensus 198 ~~~P~vlilDEp~~~ld~~-------~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~ 267 (337)
+.+|++||+||||+++|.. .+.++.+ +.|||++||+.+.+..+||+++ ++++|+++..|++++++..
T Consensus 179 ~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~-~~tiiivtH~~~~~~~~~d~v~--~l~~G~i~~~g~~~~~~~~ 252 (267)
T PRK14235 179 AVSPEVILMDEPCSALDPIATAKVEELIDELRQ-NYTIVIVTHSMQQAARVSQRTA--FFHLGNLVEVGDTEKMFTN 252 (267)
T ss_pred HcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc-CCeEEEEEcCHHHHHhhCCEEE--EEECCEEEEeCCHHHHHhC
Confidence 9999999999999999953 3444443 6899999999999999999999 9999999999999988753
No 192
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=2.7e-27 Score=217.34 Aligned_cols=166 Identities=13% Similarity=0.160 Sum_probs=125.9
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHcccc---ccCC------------------CeEE
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLS---DEFQ------------------KRVV 155 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~---~~~~------------------~~i~ 155 (337)
+++++++|+... .++++++.+++|++++|+||||||||||+++|+|++. |+.+ ..+.
T Consensus 5 ~~~l~~~~~~~~--~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~ 82 (246)
T PRK14269 5 TTNLNLFYGKKQ--ALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVG 82 (246)
T ss_pred eeeeEEEECCEe--eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhEE
Confidence 678999997644 4999999999999999999999999999999999975 3321 1244
Q ss_pred EEcCCcccccC--------C----CC--ccc----c-------ccc--------chhccCCCcchhHHHHHHHHHhhCCc
Q 019702 156 IVDTSNEIGGD--------G----DI--PHS----A-------IGT--------ARRMQVPEPSLQHKVMIEAVENHMPE 202 (337)
Q Consensus 156 ~v~~~~ei~~~--------~----~~--~~~----~-------~~~--------~~~~~~~S~g~k~r~~ia~al~~~P~ 202 (337)
++++...+... . .. +.. . ++. ......+|+||+||+++|+|++.+|+
T Consensus 83 ~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~ 162 (246)
T PRK14269 83 MVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIKPK 162 (246)
T ss_pred EEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 45443322110 0 00 000 0 000 01223479999999999999999999
Q ss_pred EEEEcCCCCHHHHH-------HHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHh
Q 019702 203 VIIVDEIGTEAEAH-------ACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (337)
Q Consensus 203 vlilDEp~~~ld~~-------~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~ 267 (337)
+|++|||++++|.. .+.++. +|.|+|++||+.+++..+||+++ ++++|+++..|++++++..
T Consensus 163 lllLDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~tH~~~~~~~~~d~i~--~l~~G~i~~~g~~~~~~~~ 231 (246)
T PRK14269 163 LLLLDEPTSALDPISSGVIEELLKELS-HNLSMIMVTHNMQQGKRVADYTA--FFHLGELIEFGESKEFFEN 231 (246)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHh-CCCEEEEEecCHHHHHhhCcEEE--EEECCEEEEECCHHHHHhC
Confidence 99999999999953 344443 48999999999999999999999 9999999999999988653
No 193
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=2.6e-27 Score=220.39 Aligned_cols=165 Identities=15% Similarity=0.166 Sum_probs=124.4
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccc-----cCCCe------------------
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSD-----EFQKR------------------ 153 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~-----~~~~~------------------ 153 (337)
+++++++|+.... ++++++.+++|++++|+||||||||||+++|+|++++ + .+.
T Consensus 16 i~nl~~~~~~~~i--l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~-~G~v~~~g~~i~~~~~~~~~~ 92 (269)
T PRK14259 16 LQNVTISYGTFEA--VKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSL-KGRVLFDGTDLYDPRVDPVEV 92 (269)
T ss_pred EEeEEEEECCEEE--EcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCC-ceEEEECCEEcccccCCHHHH
Confidence 6789999976544 9999999999999999999999999999999999863 3 222
Q ss_pred ---EEEEcCCcccccC------------CCCcc---cc----c---c--------cchhccCCCcchhHHHHHHHHHhhC
Q 019702 154 ---VVIVDTSNEIGGD------------GDIPH---SA----I---G--------TARRMQVPEPSLQHKVMIEAVENHM 200 (337)
Q Consensus 154 ---i~~v~~~~ei~~~------------~~~~~---~~----~---~--------~~~~~~~~S~g~k~r~~ia~al~~~ 200 (337)
+.++.+...+... ..... .. + + .......+|+||+||++||+|++.+
T Consensus 93 ~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~laral~~~ 172 (269)
T PRK14259 93 RRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIAIE 172 (269)
T ss_pred hhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHHHHHhcC
Confidence 3444433211100 00000 00 0 0 0012234799999999999999999
Q ss_pred CcEEEEcCCCCHHHHH-------HHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcC-----------ceEEEecCHH
Q 019702 201 PEVIIVDEIGTEAEAH-------ACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGG-----------VDTVTLGDEE 262 (337)
Q Consensus 201 P~vlilDEp~~~ld~~-------~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~-----------G~iv~~g~~~ 262 (337)
|++||+||||+++|.. .+.+++ ++.|||++||+.+++..+||+++ +|++ |+++..|+++
T Consensus 173 p~lllLDEPt~gLD~~~~~~l~~~l~~~~-~~~tiiivtH~~~~~~~~~d~i~--~l~~~~~~~~~~g~~g~~~~~~~~~ 249 (269)
T PRK14259 173 PEVILMDEPCSALDPISTLKIEETMHELK-KNFTIVIVTHNMQQAVRVSDMTA--FFNAEEVEGGSGGKVGYLVEFNETK 249 (269)
T ss_pred CCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhcCEEE--EEeccccccccccccceEEEeCCHH
Confidence 9999999999999953 344443 47899999999999999999999 8874 6799999999
Q ss_pred HHHHh
Q 019702 263 ARARR 267 (337)
Q Consensus 263 ~~~~~ 267 (337)
+++..
T Consensus 250 ~~~~~ 254 (269)
T PRK14259 250 KIFNS 254 (269)
T ss_pred HHHhC
Confidence 98764
No 194
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=2e-27 Score=218.61 Aligned_cols=166 Identities=12% Similarity=0.142 Sum_probs=125.0
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHcc---cccc-CCC--------------------
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARV---LSDE-FQK-------------------- 152 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gl---l~~~-~~~-------------------- 152 (337)
+++++++|+... .++++++.+.+|++++|+||||||||||+++|+|+ +++. ..+
T Consensus 6 ~~~~~~~~~~~~--~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 83 (250)
T PRK14245 6 ARDVNFWYGDFH--ALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDELR 83 (250)
T ss_pred EEEEEEEECCEe--EEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHHHh
Confidence 678999997644 49999999999999999999999999999999997 3331 122
Q ss_pred -eEEEEcCCcccccC------------CCCccc-----c-------ccc--------chhccCCCcchhHHHHHHHHHhh
Q 019702 153 -RVVIVDTSNEIGGD------------GDIPHS-----A-------IGT--------ARRMQVPEPSLQHKVMIEAVENH 199 (337)
Q Consensus 153 -~i~~v~~~~ei~~~------------~~~~~~-----~-------~~~--------~~~~~~~S~g~k~r~~ia~al~~ 199 (337)
.+.++.+...+... ...... . ++. ......+|+||+||+++|+|++.
T Consensus 84 ~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~ 163 (250)
T PRK14245 84 KNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAMAV 163 (250)
T ss_pred hheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHHHHhc
Confidence 24444433221110 000000 0 000 01233579999999999999999
Q ss_pred CCcEEEEcCCCCHHHH-------HHHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHh
Q 019702 200 MPEVIIVDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (337)
Q Consensus 200 ~P~vlilDEp~~~ld~-------~~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~ 267 (337)
+|++||+||||+++|. +.+.++. +|.|||++||+.+.+..+||+++ ++++|+++..|++++++..
T Consensus 164 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiivtH~~~~~~~~~d~v~--~l~~G~~~~~~~~~~~~~~ 235 (250)
T PRK14245 164 SPSVLLMDEPASALDPISTAKVEELIHELK-KDYTIVIVTHNMQQAARVSDKTA--FFYMGEMVEYDDTKKIFTN 235 (250)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHHHHHhhCCEEE--EEECCEEEEECCHHHHhcC
Confidence 9999999999999995 3444553 47899999999999989999999 9999999999999998753
No 195
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=2.3e-27 Score=216.17 Aligned_cols=164 Identities=20% Similarity=0.212 Sum_probs=123.6
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCe-------------------EEEE
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKR-------------------VVIV 157 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~-------------------i~~v 157 (337)
+++++++|.... ..++++++.+.+|++++|+||||||||||+++|+|+++|+. +. +.++
T Consensus 3 ~~~l~~~~~~~~-~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~-G~v~~~g~~~~~~~~~~~~~~i~~~ 80 (236)
T cd03253 3 FENVTFAYDPGR-PVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSS-GSILIDGQDIREVTLDSLRRAIGVV 80 (236)
T ss_pred EEEEEEEeCCCC-ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCC-CEEEECCEEhhhCCHHHHHhhEEEE
Confidence 568999996322 24899999999999999999999999999999999998873 33 3344
Q ss_pred cCCcccccC----------CCCccccc-------cc---------------chhccCCCcchhHHHHHHHHHhhCCcEEE
Q 019702 158 DTSNEIGGD----------GDIPHSAI-------GT---------------ARRMQVPEPSLQHKVMIEAVENHMPEVII 205 (337)
Q Consensus 158 ~~~~ei~~~----------~~~~~~~~-------~~---------------~~~~~~~S~g~k~r~~ia~al~~~P~vli 205 (337)
++...+... .......+ +. .+....+|+||+||++||+||+.+|++||
T Consensus 81 ~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~lll 160 (236)
T cd03253 81 PQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILL 160 (236)
T ss_pred CCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEE
Confidence 333221100 00000000 00 01124689999999999999999999999
Q ss_pred EcCCCCHHHHH-------HHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHH
Q 019702 206 VDEIGTEAEAH-------ACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (337)
Q Consensus 206 lDEp~~~ld~~-------~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~ 266 (337)
+|||++++|.. .+..+.+ |.|||++||+.+++.. ||+++ ++++|+++..|+++++..
T Consensus 161 lDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sh~~~~~~~-~d~~~--~l~~g~i~~~~~~~~~~~ 224 (236)
T cd03253 161 LDEATSALDTHTEREIQAALRDVSK-GRTTIVIAHRLSTIVN-ADKII--VLKDGRIVERGTHEELLA 224 (236)
T ss_pred EeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHHHHh-CCEEE--EEECCEEEeeCCHHHHhh
Confidence 99999999953 3444444 8999999999998865 99999 999999999999887764
No 196
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.94 E-value=3.1e-27 Score=218.34 Aligned_cols=166 Identities=14% Similarity=0.133 Sum_probs=124.1
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHcccccc----CCCeE------------------
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDE----FQKRV------------------ 154 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~----~~~~i------------------ 154 (337)
+++++++|+... .++++++.+++|++++|+||||||||||+++|+|++.|. ..+.|
T Consensus 7 i~~v~~~~~~~~--~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~~ 84 (258)
T PRK14241 7 VKDLNIYYGSFH--AVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVR 84 (258)
T ss_pred EeeEEEEECCEe--eeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHHh
Confidence 679999997654 499999999999999999999999999999999998741 12333
Q ss_pred ---EEEcCCcccccCC-------------CC-cccc-----------ccc--------chhccCCCcchhHHHHHHHHHh
Q 019702 155 ---VIVDTSNEIGGDG-------------DI-PHSA-----------IGT--------ARRMQVPEPSLQHKVMIEAVEN 198 (337)
Q Consensus 155 ---~~v~~~~ei~~~~-------------~~-~~~~-----------~~~--------~~~~~~~S~g~k~r~~ia~al~ 198 (337)
.++.+...+.... .. .... ++. ......+|+||+||++||+|++
T Consensus 85 ~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~ 164 (258)
T PRK14241 85 RTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAIA 164 (258)
T ss_pred cceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHh
Confidence 3333221111000 00 0000 000 0112447999999999999999
Q ss_pred hCCcEEEEcCCCCHHHHH-------HHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhc------CceEEEecCHHHHH
Q 019702 199 HMPEVIIVDEIGTEAEAH-------ACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIG------GVDTVTLGDEEARA 265 (337)
Q Consensus 199 ~~P~vlilDEp~~~ld~~-------~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~------~G~iv~~g~~~~~~ 265 (337)
.+|++||+||||+++|.. .+.+++ ++.|||++||+.+++..+||+++ ++. +|++++.|++++++
T Consensus 165 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tviivsH~~~~~~~~~d~i~--~l~~~~~~~~g~i~~~~~~~~~~ 241 (258)
T PRK14241 165 VEPDVLLMDEPCSALDPISTLAIEDLINELK-QDYTIVIVTHNMQQAARVSDQTA--FFNLEATGKPGRLVEIDDTEKIF 241 (258)
T ss_pred cCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEecCHHHHHHhCCEEE--EEecccCCCCceEEecCCHHHHH
Confidence 999999999999999953 344443 46899999999999989999998 785 79999999999887
Q ss_pred Hh
Q 019702 266 RR 267 (337)
Q Consensus 266 ~~ 267 (337)
..
T Consensus 242 ~~ 243 (258)
T PRK14241 242 SN 243 (258)
T ss_pred hC
Confidence 53
No 197
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.94 E-value=3.3e-27 Score=219.53 Aligned_cols=167 Identities=14% Similarity=0.206 Sum_probs=126.3
Q ss_pred EeeEEEEECCc-------cccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCe----------------
Q 019702 97 IVGLTCRVGRA-------VSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKR---------------- 153 (337)
Q Consensus 97 i~~l~~r~~~~-------~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~---------------- 153 (337)
+++++++|+.. ....++++++.+.+|++++|+||||||||||+++|+|+++|+. +.
T Consensus 6 ~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~s-G~i~~~g~~~~~~~~~~~ 84 (268)
T PRK10419 6 VSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQ-GNVSWRGEPLAKLNRAQR 84 (268)
T ss_pred EeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC-cEEEECCEeccccChhHH
Confidence 67899999730 1235999999999999999999999999999999999998863 32
Q ss_pred ------EEEEcCCcc--cccCCCC--------------ccc-c---c-------cc-----chhccCCCcchhHHHHHHH
Q 019702 154 ------VVIVDTSNE--IGGDGDI--------------PHS-A---I-------GT-----ARRMQVPEPSLQHKVMIEA 195 (337)
Q Consensus 154 ------i~~v~~~~e--i~~~~~~--------------~~~-~---~-------~~-----~~~~~~~S~g~k~r~~ia~ 195 (337)
+.++.+... +.....+ ... . + +. ......+|+||+||++||+
T Consensus 85 ~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~lar 164 (268)
T PRK10419 85 KAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCLAR 164 (268)
T ss_pred HHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHHHHH
Confidence 333333221 1000000 000 0 0 00 0123347999999999999
Q ss_pred HHhhCCcEEEEcCCCCHHHH-------HHHHHHHhc-CCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHH
Q 019702 196 VENHMPEVIIVDEIGTEAEA-------HACRSIAER-GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (337)
Q Consensus 196 al~~~P~vlilDEp~~~ld~-------~~l~~~~~~-G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~ 266 (337)
|++.+|++||+||||+++|. +.+.++.++ |.|+|++||+.+.+..+||+++ ++++|+++..|++++++.
T Consensus 165 al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~--~l~~G~i~~~g~~~~~~~ 241 (268)
T PRK10419 165 ALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVM--VMDNGQIVETQPVGDKLT 241 (268)
T ss_pred HHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEE--EEECCEEeeeCChhhccC
Confidence 99999999999999999995 345555554 8999999999999999999999 999999999999988764
No 198
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.94 E-value=1.6e-27 Score=239.39 Aligned_cols=164 Identities=12% Similarity=0.115 Sum_probs=126.8
Q ss_pred eeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCC-------------------CeEEEEc
Q 019702 98 VGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ-------------------KRVVIVD 158 (337)
Q Consensus 98 ~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~-------------------~~i~~v~ 158 (337)
++++++|++.. .++++++.+++|++++|+||||||||||+++|+|+++|+.+ ..+.++.
T Consensus 2 ~nl~~~~~~~~--il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~ 79 (491)
T PRK10982 2 SNISKSFPGVK--ALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVH 79 (491)
T ss_pred CceEEEeCCEE--eeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEe
Confidence 58999997654 49999999999999999999999999999999999988632 1244444
Q ss_pred CCcccccC---------CCC-------cccc----c-------c----cchhccCCCcchhHHHHHHHHHhhCCcEEEEc
Q 019702 159 TSNEIGGD---------GDI-------PHSA----I-------G----TARRMQVPEPSLQHKVMIEAVENHMPEVIIVD 207 (337)
Q Consensus 159 ~~~ei~~~---------~~~-------~~~~----~-------~----~~~~~~~~S~g~k~r~~ia~al~~~P~vlilD 207 (337)
+...+... ... .... + + ..+....+|+||+||++||+|++.+|++||+|
T Consensus 80 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p~lllLD 159 (491)
T PRK10982 80 QELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMD 159 (491)
T ss_pred cccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCCCEEEEe
Confidence 43221100 000 0000 0 0 01223457999999999999999999999999
Q ss_pred CCCCHHHH-------HHHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHH
Q 019702 208 EIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARA 265 (337)
Q Consensus 208 Ep~~~ld~-------~~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~ 265 (337)
|||+++|. +.+.++++.|.|||++||+.+++..+||+++ ++++|+++..|+++++.
T Consensus 160 EPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~--~l~~G~i~~~~~~~~~~ 222 (491)
T PRK10982 160 EPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEIT--ILRDGQWIATQPLAGLT 222 (491)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEE--EEECCEEEeecChhhCC
Confidence 99999995 3455666679999999999999999999999 99999999999987753
No 199
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=3.4e-27 Score=217.02 Aligned_cols=164 Identities=16% Similarity=0.152 Sum_probs=124.4
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccc-----cCCCe------------------
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSD-----EFQKR------------------ 153 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~-----~~~~~------------------ 153 (337)
+++++++|+... .++++++.+++|++++|+||||||||||+++|+|++.| + .+.
T Consensus 6 ~~~l~~~~~~~~--~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~-~G~i~i~g~~~~~~~~~~~~~ 82 (250)
T PRK14262 6 IENFSAYYGEKK--AVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRV-EGKIYFKGQDIYDPQLDVTEY 82 (250)
T ss_pred EEeeEEEeCCce--eEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCc-ceEEEECCEEcccchhhHHHh
Confidence 678999997544 49999999999999999999999999999999999863 3 222
Q ss_pred ---EEEEcCCcccccC------------CCC-cccc-----------cc--------cchhccCCCcchhHHHHHHHHHh
Q 019702 154 ---VVIVDTSNEIGGD------------GDI-PHSA-----------IG--------TARRMQVPEPSLQHKVMIEAVEN 198 (337)
Q Consensus 154 ---i~~v~~~~ei~~~------------~~~-~~~~-----------~~--------~~~~~~~~S~g~k~r~~ia~al~ 198 (337)
+.++.+...+... ... +... ++ ..+....+|+||+||+++|+|++
T Consensus 83 ~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~al~ 162 (250)
T PRK14262 83 RKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALA 162 (250)
T ss_pred hhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHHHHh
Confidence 3333332211100 000 0000 00 00123357999999999999999
Q ss_pred hCCcEEEEcCCCCHHHHH-------HHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHH
Q 019702 199 HMPEVIIVDEIGTEAEAH-------ACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (337)
Q Consensus 199 ~~P~vlilDEp~~~ld~~-------~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~ 266 (337)
.+|++|++||||+++|.. .+.++. ++.|+|++||+.+.+..+||+++ ++++|+++..|+++++..
T Consensus 163 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tili~sH~~~~~~~~~d~i~--~l~~G~i~~~g~~~~~~~ 234 (250)
T PRK14262 163 VEPEVILLDEPTSALDPIATQRIEKLLEELS-ENYTIVIVTHNIGQAIRIADYIA--FMYRGELIEYGPTREIVE 234 (250)
T ss_pred CCCCEEEEeCCccccCHHHHHHHHHHHHHHh-cCcEEEEEeCCHHHHHHhCCEEE--EEECCEEEEecCHHHHHh
Confidence 999999999999999953 344443 37899999999998889999999 999999999999998765
No 200
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=3e-27 Score=220.55 Aligned_cols=166 Identities=16% Similarity=0.151 Sum_probs=125.2
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHcccccc----CCC--------------------
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDE----FQK-------------------- 152 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~----~~~-------------------- 152 (337)
+++++++|+... .++++++.+.+|++++|+||||||||||+++|+|++.+. ..+
T Consensus 23 ~~nl~~~~~~~~--~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~~~~ 100 (274)
T PRK14265 23 VEGVKVFYGGFL--ALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLR 100 (274)
T ss_pred EeeEEEEeCCeE--EEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhHHHh
Confidence 668999997654 499999999999999999999999999999999998531 122
Q ss_pred -eEEEEcCCcccccC--------C----CCcc---cc-------ccc--------chhccCCCcchhHHHHHHHHHhhCC
Q 019702 153 -RVVIVDTSNEIGGD--------G----DIPH---SA-------IGT--------ARRMQVPEPSLQHKVMIEAVENHMP 201 (337)
Q Consensus 153 -~i~~v~~~~ei~~~--------~----~~~~---~~-------~~~--------~~~~~~~S~g~k~r~~ia~al~~~P 201 (337)
.+.++.+...+... . .... .. ++. ......+|+||+||++||+|++.+|
T Consensus 101 ~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p 180 (274)
T PRK14265 101 RQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIAMKP 180 (274)
T ss_pred hcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHHHHHhhCC
Confidence 23444443221100 0 0000 00 000 0123447999999999999999999
Q ss_pred cEEEEcCCCCHHHH-------HHHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhc---------CceEEEecCHHHHH
Q 019702 202 EVIIVDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIG---------GVDTVTLGDEEARA 265 (337)
Q Consensus 202 ~vlilDEp~~~ld~-------~~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~---------~G~iv~~g~~~~~~ 265 (337)
++||+||||+++|. +.+.++. ++.|||++||+.+++..+||+++ +|+ +|+++..|++++++
T Consensus 181 ~lllLDEPt~~LD~~~~~~l~~~L~~~~-~~~tiii~sH~~~~~~~~~d~i~--~l~~~~~~~~~~~G~~~~~g~~~~~~ 257 (274)
T PRK14265 181 DVLLMDEPCSALDPISTRQVEELCLELK-EQYTIIMVTHNMQQASRVADWTA--FFNTEIDEYGKRRGKLVEFSPTEQMF 257 (274)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEE--EEecccccccccCceEEEeCCHHHHH
Confidence 99999999999995 3344444 36899999999999999999999 886 79999999999987
Q ss_pred Hh
Q 019702 266 RR 267 (337)
Q Consensus 266 ~~ 267 (337)
..
T Consensus 258 ~~ 259 (274)
T PRK14265 258 GS 259 (274)
T ss_pred hC
Confidence 64
No 201
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=3.5e-27 Score=218.06 Aligned_cols=166 Identities=13% Similarity=0.123 Sum_probs=127.1
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCC-----C-------------------
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ-----K------------------- 152 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~-----~------------------- 152 (337)
+++++++|++... ++++++.+.+|++++|+||||||||||+++|+|++.|+.+ +
T Consensus 13 ~~~~~~~~~~~~~--l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~~~~ 90 (257)
T PRK14246 13 ISRLYLYINDKAI--LKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKLRK 90 (257)
T ss_pred eeeEEEecCCcee--EeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHHHhc
Confidence 6789999987655 9999999999999999999999999999999999987642 1
Q ss_pred eEEEEcCCcccccC-------------CCC-cccc-----------ccc--------chhccCCCcchhHHHHHHHHHhh
Q 019702 153 RVVIVDTSNEIGGD-------------GDI-PHSA-----------IGT--------ARRMQVPEPSLQHKVMIEAVENH 199 (337)
Q Consensus 153 ~i~~v~~~~ei~~~-------------~~~-~~~~-----------~~~--------~~~~~~~S~g~k~r~~ia~al~~ 199 (337)
.+.++.+...+... ... +... ++. ......+|+||+||++||+|++.
T Consensus 91 ~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~ 170 (257)
T PRK14246 91 EVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALAL 170 (257)
T ss_pred ceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHHHHHHHc
Confidence 13333332221100 000 0000 000 01223469999999999999999
Q ss_pred CCcEEEEcCCCCHHHHH-------HHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHh
Q 019702 200 MPEVIIVDEIGTEAEAH-------ACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (337)
Q Consensus 200 ~P~vlilDEp~~~ld~~-------~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~ 267 (337)
+|+++++||||+++|.. .+.++. ++.|||++||+.+.+..+||+++ ++++|+++..|+++++..+
T Consensus 171 ~P~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tiilvsh~~~~~~~~~d~v~--~l~~g~i~~~g~~~~~~~~ 242 (257)
T PRK14246 171 KPKVLLMDEPTSMIDIVNSQAIEKLITELK-NEIAIVIVSHNPQQVARVADYVA--FLYNGELVEWGSSNEIFTS 242 (257)
T ss_pred CCCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCcEEEEEECCHHHHHHhCCEEE--EEECCEEEEECCHHHHHhC
Confidence 99999999999999953 344443 36899999999999989999999 9999999999999988764
No 202
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.94 E-value=4e-27 Score=203.87 Aligned_cols=149 Identities=16% Similarity=0.219 Sum_probs=111.1
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCC-------CeEEEEcCCcccccCCCC
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ-------KRVVIVDTSNEIGGDGDI 169 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~-------~~i~~v~~~~ei~~~~~~ 169 (337)
+++++++|.... ..++++++.+.+|++++|+||||||||||+++|+|+++|+.+ ..+.++.+...+. ...+
T Consensus 3 ~~~~~~~~~~~~-~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~-~~tv 80 (166)
T cd03223 3 LENLSLATPDGR-VLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLP-LGTL 80 (166)
T ss_pred EEEEEEEcCCCC-eeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCccc-cccH
Confidence 568999995322 248999999999999999999999999999999999988743 2344444433221 0111
Q ss_pred cccccccchhccCCCcchhHHHHHHHHHhhCCcEEEEcCCCCHHHHHHHH----HHHhcCCeEEEEEcCcchhHHhhchH
Q 019702 170 PHSAIGTARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR----SIAERGVMLIGTAHGEWLENIIKNPI 245 (337)
Q Consensus 170 ~~~~~~~~~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~~ld~~~l~----~~~~~G~tvi~t~H~~~~~~~~~d~v 245 (337)
.++... .....+|+||+||+++|+|++.+|+++++|||++++|..... .+.+.+.|+|++||+.+.. .+||++
T Consensus 81 ~~nl~~--~~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~tiiivsh~~~~~-~~~d~i 157 (166)
T cd03223 81 REQLIY--PWDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKELGITVISVGHRPSLW-KFHDRV 157 (166)
T ss_pred HHHhhc--cCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHhCCEEEEEeCChhHH-hhCCEE
Confidence 111100 035678999999999999999999999999999999964322 2233478999999999865 589998
Q ss_pred HHHHhcC
Q 019702 246 LSDLIGG 252 (337)
Q Consensus 246 ~~~ll~~ 252 (337)
+ ++++
T Consensus 158 ~--~l~~ 162 (166)
T cd03223 158 L--DLDG 162 (166)
T ss_pred E--EEcC
Confidence 8 6654
No 203
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.94 E-value=3.9e-27 Score=210.67 Aligned_cols=161 Identities=16% Similarity=0.175 Sum_probs=120.3
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCC------------------CeEEEEc
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ------------------KRVVIVD 158 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~------------------~~i~~v~ 158 (337)
+++++++|+......++++++.+.+|++++|+||||||||||+++|+|+++|+.+ ..+.++.
T Consensus 9 ~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~ 88 (207)
T cd03369 9 VENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSLTIIP 88 (207)
T ss_pred EEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhhEEEEe
Confidence 6689999975322359999999999999999999999999999999999987632 1244444
Q ss_pred CCcccccC---------CCCcccc----cccchhccCCCcchhHHHHHHHHHhhCCcEEEEcCCCCHHHHH-------HH
Q 019702 159 TSNEIGGD---------GDIPHSA----IGTARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAH-------AC 218 (337)
Q Consensus 159 ~~~ei~~~---------~~~~~~~----~~~~~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~~ld~~-------~l 218 (337)
+...+... ....... +........+|+|++||+++|+|++.+|++||+|||++++|.. .+
T Consensus 89 q~~~~~~~tv~~~l~~~~~~~~~~~~~~l~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l 168 (207)
T cd03369 89 QDPTLFSGTIRSNLDPFDEYSDEEIYGALRVSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTI 168 (207)
T ss_pred cCCcccCccHHHHhcccCCCCHHHHHHHhhccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 43322110 0000000 0001234568999999999999999999999999999999953 33
Q ss_pred HHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCH
Q 019702 219 RSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDE 261 (337)
Q Consensus 219 ~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~ 261 (337)
.++ .+|.|+|++||+.+++.. ||+++ ++++|+++..|++
T Consensus 169 ~~~-~~~~tiii~th~~~~~~~-~d~v~--~l~~g~i~~~g~~ 207 (207)
T cd03369 169 REE-FTNSTILTIAHRLRTIID-YDKIL--VMDAGEVKEYDHP 207 (207)
T ss_pred HHh-cCCCEEEEEeCCHHHHhh-CCEEE--EEECCEEEecCCC
Confidence 333 348999999999998865 99999 9999999887754
No 204
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.94 E-value=2.9e-27 Score=244.02 Aligned_cols=168 Identities=15% Similarity=0.171 Sum_probs=132.3
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCC------------------CeEEEEc
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ------------------KRVVIVD 158 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~------------------~~i~~v~ 158 (337)
+++++++|....+..++++++.+++|+.++|+|+||||||||+|.|.|++.|+.| +.|+++.
T Consensus 474 ~~nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~ 553 (709)
T COG2274 474 FENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVL 553 (709)
T ss_pred EEEEEEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhheeEEc
Confidence 6799999998866679999999999999999999999999999999999999732 4566666
Q ss_pred CCcccccC-------CCCcccc---ccc----------------------chhccCCCcchhHHHHHHHHHhhCCcEEEE
Q 019702 159 TSNEIGGD-------GDIPHSA---IGT----------------------ARRMQVPEPSLQHKVMIEAVENHMPEVIIV 206 (337)
Q Consensus 159 ~~~ei~~~-------~~~~~~~---~~~----------------------~~~~~~~S~g~k~r~~ia~al~~~P~vlil 206 (337)
+...+... ..-|... +.. .+.-..+|||||||++||||+..+|+||+|
T Consensus 554 Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~ILlL 633 (709)
T COG2274 554 QDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLL 633 (709)
T ss_pred ccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCCCEEEE
Confidence 65433211 0001100 000 011223799999999999999999999999
Q ss_pred cCCCCHHHHHH----HHHHH--hcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHh
Q 019702 207 DEIGTEAEAHA----CRSIA--ERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (337)
Q Consensus 207 DEp~~~ld~~~----l~~~~--~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~ 267 (337)
|||||++|.+. ...+. .+|.|+|+++|..+.. ..||+++ +|++|+++.+|+.++++..
T Consensus 634 DEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti-~~adrIi--Vl~~Gkiv~~gs~~ell~~ 697 (709)
T COG2274 634 DEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTI-RSADRII--VLDQGKIVEQGSHEELLAQ 697 (709)
T ss_pred eCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHh-hhccEEE--EccCCceeccCCHHHHHHh
Confidence 99999999532 33333 3579999999999966 6899999 9999999999999999874
No 205
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.94 E-value=3.5e-27 Score=238.56 Aligned_cols=166 Identities=13% Similarity=0.148 Sum_probs=126.1
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccc--cccCCCeEEE------------------
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVL--SDEFQKRVVI------------------ 156 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll--~~~~~~~i~~------------------ 156 (337)
+++++++|+... .++++++.+.+|++++|+||||||||||+++|+|++ +|+ .+.|.+
T Consensus 3 ~~~l~~~~~~~~--~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~-~G~i~~~~~~~~~~~~~~~~~~~g 79 (520)
T TIGR03269 3 VKNLTKKFDGKE--VLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPT-SGRIIYHVALCEKCGYVERPSKVG 79 (520)
T ss_pred EEEEEEEECCeE--eeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCC-ceEEEEeccccccccccccccccc
Confidence 578999997644 499999999999999999999999999999999997 565 343332
Q ss_pred ----------------------------------EcCC-cccccC-------------CCCcccc----c-------cc-
Q 019702 157 ----------------------------------VDTS-NEIGGD-------------GDIPHSA----I-------GT- 176 (337)
Q Consensus 157 ----------------------------------v~~~-~ei~~~-------------~~~~~~~----~-------~~- 176 (337)
+.+. ..+... ...+... + +.
T Consensus 80 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~ 159 (520)
T TIGR03269 80 EPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLS 159 (520)
T ss_pred cccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh
Confidence 2221 000000 0000000 0 00
Q ss_pred ---chhccCCCcchhHHHHHHHHHhhCCcEEEEcCCCCHHHHH-------HHHHHHh-cCCeEEEEEcCcchhHHhhchH
Q 019702 177 ---ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAH-------ACRSIAE-RGVMLIGTAHGEWLENIIKNPI 245 (337)
Q Consensus 177 ---~~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~~ld~~-------~l~~~~~-~G~tvi~t~H~~~~~~~~~d~v 245 (337)
.+....+|+||+||++||+||+++|++|||||||+++|.. .+.++++ .|.|||++||+.+.+..+||++
T Consensus 160 ~~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~i 239 (520)
T TIGR03269 160 HRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDKA 239 (520)
T ss_pred hhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEE
Confidence 0234557999999999999999999999999999999953 3555544 4899999999999999999999
Q ss_pred HHHHhcCceEEEecCHHHHHHh
Q 019702 246 LSDLIGGVDTVTLGDEEARARR 267 (337)
Q Consensus 246 ~~~ll~~G~iv~~g~~~~~~~~ 267 (337)
+ +|++|+++..|++++++..
T Consensus 240 ~--~l~~G~i~~~g~~~~~~~~ 259 (520)
T TIGR03269 240 I--WLENGEIKEEGTPDEVVAV 259 (520)
T ss_pred E--EEeCCEEeeecCHHHHHHH
Confidence 9 9999999999999887654
No 206
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=5.2e-27 Score=217.32 Aligned_cols=167 Identities=15% Similarity=0.136 Sum_probs=126.5
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHcccccc----CCCeE------------------
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDE----FQKRV------------------ 154 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~----~~~~i------------------ 154 (337)
+++++++|+... .++++++.+++|++++|+||||||||||+++|+|+++|+ ..+.+
T Consensus 10 ~~nl~~~~~~~~--il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~~~~ 87 (261)
T PRK14258 10 VNNLSFYYDTQK--ILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNRLR 87 (261)
T ss_pred EeeEEEEeCCee--EeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchHHhh
Confidence 678999997644 499999999999999999999999999999999999874 12322
Q ss_pred ---EEEcCCcccccC------------CCC-cccc-----------ccc--------chhccCCCcchhHHHHHHHHHhh
Q 019702 155 ---VIVDTSNEIGGD------------GDI-PHSA-----------IGT--------ARRMQVPEPSLQHKVMIEAVENH 199 (337)
Q Consensus 155 ---~~v~~~~ei~~~------------~~~-~~~~-----------~~~--------~~~~~~~S~g~k~r~~ia~al~~ 199 (337)
.++.+...+... ... +... ++. .+....+|+||+||+++|++++.
T Consensus 88 ~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~ 167 (261)
T PRK14258 88 RQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARALAV 167 (261)
T ss_pred ccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhc
Confidence 222222111000 000 0000 000 01224579999999999999999
Q ss_pred CCcEEEEcCCCCHHHHH-------HHHHHHh-cCCeEEEEEcCcchhHHhhchHHHHHhcC-----ceEEEecCHHHHHH
Q 019702 200 MPEVIIVDEIGTEAEAH-------ACRSIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGG-----VDTVTLGDEEARAR 266 (337)
Q Consensus 200 ~P~vlilDEp~~~ld~~-------~l~~~~~-~G~tvi~t~H~~~~~~~~~d~v~~~ll~~-----G~iv~~g~~~~~~~ 266 (337)
+|++|++||||+++|.. .+.+++. .|.|+|++||+.+++..+||+++ +|++ |+++..|++++++.
T Consensus 168 ~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~--~l~~~~~~~G~i~~~~~~~~~~~ 245 (261)
T PRK14258 168 KPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTA--FFKGNENRIGQLVEFGLTKKIFN 245 (261)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEE--EEccCCCcCceEEEeCCHHHHHh
Confidence 99999999999999953 3444443 48999999999999999999999 9998 99999999999876
Q ss_pred h
Q 019702 267 R 267 (337)
Q Consensus 267 ~ 267 (337)
.
T Consensus 246 ~ 246 (261)
T PRK14258 246 S 246 (261)
T ss_pred C
Confidence 4
No 207
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=4.3e-27 Score=209.92 Aligned_cols=160 Identities=12% Similarity=0.124 Sum_probs=115.5
Q ss_pred EeeEEEEECCc--cccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHcccc---ccCCCeEEE---------------
Q 019702 97 IVGLTCRVGRA--VSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLS---DEFQKRVVI--------------- 156 (337)
Q Consensus 97 i~~l~~r~~~~--~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~---~~~~~~i~~--------------- 156 (337)
++++++.|... ....++++++.+++|++++|+||||||||||+++|+|+++ |+ .+.+.+
T Consensus 6 ~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~-~G~i~i~g~~~~~~~~~~~~~ 84 (202)
T cd03233 6 WRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSV-EGDIHYNGIPYKEFAEKYPGE 84 (202)
T ss_pred EEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCc-ceEEEECCEECccchhhhcce
Confidence 67999999743 3346899999999999999999999999999999999998 54 333332
Q ss_pred ---EcCCcccccCCCCcccc-cc----cchhccCCCcchhHHHHHHHHHhhCCcEEEEcCCCCHHHH-------HHHHHH
Q 019702 157 ---VDTSNEIGGDGDIPHSA-IG----TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEA-------HACRSI 221 (337)
Q Consensus 157 ---v~~~~ei~~~~~~~~~~-~~----~~~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~~ld~-------~~l~~~ 221 (337)
+.+...+.....+.++. +. .......+|+||+||++||+|++.+|++|++|||++++|. +.+.++
T Consensus 85 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~ 164 (202)
T cd03233 85 IIYVSEEDVHFPTLTVRETLDFALRCKGNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTM 164 (202)
T ss_pred EEEEecccccCCCCcHHHHHhhhhhhccccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHH
Confidence 22111110000000000 00 1123456899999999999999999999999999999995 345555
Q ss_pred Hhc-CCeEEEE-EcCcchhHHhhchHHHHHhcCceEEEec
Q 019702 222 AER-GVMLIGT-AHGEWLENIIKNPILSDLIGGVDTVTLG 259 (337)
Q Consensus 222 ~~~-G~tvi~t-~H~~~~~~~~~d~v~~~ll~~G~iv~~g 259 (337)
.+. +.++|++ +|+.+.+..+||+++ ++++|+++..|
T Consensus 165 ~~~~~~t~ii~~~h~~~~~~~~~d~i~--~l~~G~i~~~g 202 (202)
T cd03233 165 ADVLKTTTFVSLYQASDEIYDLFDKVL--VLYEGRQIYYG 202 (202)
T ss_pred HHhCCCEEEEEEcCCHHHHHHhCCeEE--EEECCEEEecC
Confidence 554 6665554 556677888999999 99999988654
No 208
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=5.4e-27 Score=215.88 Aligned_cols=166 Identities=14% Similarity=0.122 Sum_probs=125.7
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHcccc--cc--CCC--------------------
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLS--DE--FQK-------------------- 152 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~--~~--~~~-------------------- 152 (337)
+++++++|+... .++++++.+.+|++++|+||||||||||+++|+|+++ |. ..+
T Consensus 8 ~~~l~~~~~~~~--~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 85 (252)
T PRK14255 8 SSDVHLFYGKFE--ALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLR 85 (252)
T ss_pred EEeEEEEECCee--EEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHHhc
Confidence 679999998644 4999999999999999999999999999999999864 31 012
Q ss_pred -eEEEEcCCcccccC------------CCCccc-----c-------cc--------cchhccCCCcchhHHHHHHHHHhh
Q 019702 153 -RVVIVDTSNEIGGD------------GDIPHS-----A-------IG--------TARRMQVPEPSLQHKVMIEAVENH 199 (337)
Q Consensus 153 -~i~~v~~~~ei~~~------------~~~~~~-----~-------~~--------~~~~~~~~S~g~k~r~~ia~al~~ 199 (337)
.+.++.+...+... ...... . .+ .......+|+||+||++||+|++.
T Consensus 86 ~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~laral~~ 165 (252)
T PRK14255 86 KQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVLAV 165 (252)
T ss_pred CeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHHHHHHhc
Confidence 24444443221100 000000 0 00 012234579999999999999999
Q ss_pred CCcEEEEcCCCCHHHHH-------HHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHh
Q 019702 200 MPEVIIVDEIGTEAEAH-------ACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (337)
Q Consensus 200 ~P~vlilDEp~~~ld~~-------~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~ 267 (337)
+|++||+||||+++|.. .+.++.+ +.|+|++||+.+++..+||+++ ++++|+++..|++.+++..
T Consensus 166 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~~~~~~~d~i~--~l~~G~i~~~~~~~~~~~~ 237 (252)
T PRK14255 166 KPDVILLDEPTSALDPISSTQIENMLLELRD-QYTIILVTHSMHQASRISDKTA--FFLTGNLIEFADTKQMFLN 237 (252)
T ss_pred CCCEEEEcCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEECCHHHHHHhCCEEE--EEECCEEEEeCCHHHHhcC
Confidence 99999999999999953 3444444 5899999999999989999999 9999999999999988754
No 209
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.94 E-value=4.5e-27 Score=213.09 Aligned_cols=162 Identities=19% Similarity=0.178 Sum_probs=121.9
Q ss_pred cEeeEEEEECCcc--ccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHcccc---ccCC---------------CeEE
Q 019702 96 AIVGLTCRVGRAV--SGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLS---DEFQ---------------KRVV 155 (337)
Q Consensus 96 ~i~~l~~r~~~~~--~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~---~~~~---------------~~i~ 155 (337)
++++++++|.... ...++++++.+++|++++|+||||||||||+++|+|+++ |+.+ ..+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~i~ 84 (226)
T cd03234 5 PWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKCVA 84 (226)
T ss_pred eeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhcccEE
Confidence 4678999997652 446999999999999999999999999999999999998 6522 1244
Q ss_pred EEcCCcccccC------------CCCcc----c----ccc--c----------chhccCCCcchhHHHHHHHHHhhCCcE
Q 019702 156 IVDTSNEIGGD------------GDIPH----S----AIG--T----------ARRMQVPEPSLQHKVMIEAVENHMPEV 203 (337)
Q Consensus 156 ~v~~~~ei~~~------------~~~~~----~----~~~--~----------~~~~~~~S~g~k~r~~ia~al~~~P~v 203 (337)
++.+...+... ...+. . ... . .+....+|+||+||+++|+|++.+|++
T Consensus 85 ~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~i 164 (226)
T cd03234 85 YVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKV 164 (226)
T ss_pred EeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHHhCCCE
Confidence 44443221100 00000 0 000 0 012345799999999999999999999
Q ss_pred EEEcCCCCHHHH-------HHHHHHHhcCCeEEEEEcCc-chhHHhhchHHHHHhcCceEEEec
Q 019702 204 IIVDEIGTEAEA-------HACRSIAERGVMLIGTAHGE-WLENIIKNPILSDLIGGVDTVTLG 259 (337)
Q Consensus 204 lilDEp~~~ld~-------~~l~~~~~~G~tvi~t~H~~-~~~~~~~d~v~~~ll~~G~iv~~g 259 (337)
|++|||++++|. +.+.++.+.|.|+|++||+. +.+..+||+++ ++++|++++.|
T Consensus 165 lllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~--~l~~G~i~~~g 226 (226)
T cd03234 165 LILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRIL--LLSSGEIVYSG 226 (226)
T ss_pred EEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEE--EEeCCEEEecC
Confidence 999999999995 34555556689999999998 47888999999 99999998764
No 210
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.94 E-value=4.7e-27 Score=218.85 Aligned_cols=165 Identities=14% Similarity=0.143 Sum_probs=125.7
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHcccc-----ccCCCe------------------
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLS-----DEFQKR------------------ 153 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~-----~~~~~~------------------ 153 (337)
+++++++|+... .++++++.+.+|++++|+|+||||||||+++|+|++. |+ .+.
T Consensus 27 ~~~l~~~~~~~~--il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~-~G~i~~~g~~~~~~~~~~~~~ 103 (271)
T PRK14238 27 TQNLNLWYGEDH--ALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKT-TGKILYRDQNIFDKSYSVEEL 103 (271)
T ss_pred EeeeEEEECCcc--eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCC-ceeEEECCEEcccccccHHHH
Confidence 668999997544 4999999999999999999999999999999999986 34 222
Q ss_pred ---EEEEcCCcccccC------------CCC-cccc----ccc---------------chhccCCCcchhHHHHHHHHHh
Q 019702 154 ---VVIVDTSNEIGGD------------GDI-PHSA----IGT---------------ARRMQVPEPSLQHKVMIEAVEN 198 (337)
Q Consensus 154 ---i~~v~~~~ei~~~------------~~~-~~~~----~~~---------------~~~~~~~S~g~k~r~~ia~al~ 198 (337)
+.++.+...+... ... .... +.. ......+|+||+||++||+|++
T Consensus 104 ~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~laraL~ 183 (271)
T PRK14238 104 RTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIARCLA 183 (271)
T ss_pred hhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHHHHHHH
Confidence 3344433221100 000 0000 000 0123347999999999999999
Q ss_pred hCCcEEEEcCCCCHHHH-------HHHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHh
Q 019702 199 HMPEVIIVDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (337)
Q Consensus 199 ~~P~vlilDEp~~~ld~-------~~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~ 267 (337)
.+|++||+||||+++|. +.+.++.+ +.|+|++||+.+++..+||+++ ++++|+++..|++++++..
T Consensus 184 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~~i~~~~d~i~--~l~~G~i~~~g~~~~~~~~ 256 (271)
T PRK14238 184 IEPDVILMDEPTSALDPISTLKVEELVQELKK-DYSIIIVTHNMQQAARISDKTA--FFLNGYVNEYDDTDKIFSN 256 (271)
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc-CCEEEEEEcCHHHHHHhCCEEE--EEECCEEEEeCCHHHHHcC
Confidence 99999999999999995 33445544 7899999999999989999999 9999999999999988653
No 211
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=3.9e-27 Score=216.47 Aligned_cols=165 Identities=15% Similarity=0.107 Sum_probs=124.8
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHcccccc----CCCe-------------------
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDE----FQKR------------------- 153 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~----~~~~------------------- 153 (337)
+++++++|+... .++++++.+.+|++++|+||||||||||+++|+|+++|. ..+.
T Consensus 6 ~~~l~~~~~~~~--~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~ 83 (249)
T PRK14253 6 IENLDLFYGENQ--ALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLRI 83 (249)
T ss_pred EeccEEEECCee--eeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHHh
Confidence 668999997644 499999999999999999999999999999999998752 1122
Q ss_pred -EEEEcCCcccccC------------CCCc-ccc-----------ccc--------chhccCCCcchhHHHHHHHHHhhC
Q 019702 154 -VVIVDTSNEIGGD------------GDIP-HSA-----------IGT--------ARRMQVPEPSLQHKVMIEAVENHM 200 (337)
Q Consensus 154 -i~~v~~~~ei~~~------------~~~~-~~~-----------~~~--------~~~~~~~S~g~k~r~~ia~al~~~ 200 (337)
+.++.+...+... .... ... ++. ......+|+||+||++||+|++.+
T Consensus 84 ~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~ 163 (249)
T PRK14253 84 KVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTIAME 163 (249)
T ss_pred heeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHHHHcC
Confidence 3344333211100 0000 000 000 012235799999999999999999
Q ss_pred CcEEEEcCCCCHHHHH-------HHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHH
Q 019702 201 PEVIIVDEIGTEAEAH-------ACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (337)
Q Consensus 201 P~vlilDEp~~~ld~~-------~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~ 266 (337)
|++||+||||+++|.. .+.++.+ +.|||++||+.+++..+||+++ ++++|+++..|+++++..
T Consensus 164 p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~~~~~~d~i~--~l~~G~i~~~g~~~~~~~ 233 (249)
T PRK14253 164 PDVILMDEPTSALDPIATHKIEELMEELKK-NYTIVIVTHSMQQARRISDRTA--FFLMGELVEHDDTQVIFS 233 (249)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEecCHHHHHHhCCEEE--EEECCEEEEeCCHHHHHc
Confidence 9999999999999953 4445544 5899999999999999999999 999999999999988764
No 212
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.94 E-value=6.5e-27 Score=214.68 Aligned_cols=163 Identities=15% Similarity=0.076 Sum_probs=121.9
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccc--cccCCCe--------------------E
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVL--SDEFQKR--------------------V 154 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll--~~~~~~~--------------------i 154 (337)
+++++++|+... .++++++.+++|++++|+||||||||||+++|+|++ +|+. +. +
T Consensus 4 ~~nl~~~~~~~~--~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~-G~i~~~g~~~~~~~~~~~~~~~i 80 (248)
T PRK09580 4 IKDLHVSVEDKA--ILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTG-GTVEFKGKDLLELSPEDRAGEGI 80 (248)
T ss_pred EEEEEEEeCCee--eeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCc-eEEEECCCccccCCHHHHhhcce
Confidence 678999997654 499999999999999999999999999999999995 4552 32 3
Q ss_pred EEEcCCcccccC-----------CCC----cc---c--cccc---------------c-hhc-cCCCcchhHHHHHHHHH
Q 019702 155 VIVDTSNEIGGD-----------GDI----PH---S--AIGT---------------A-RRM-QVPEPSLQHKVMIEAVE 197 (337)
Q Consensus 155 ~~v~~~~ei~~~-----------~~~----~~---~--~~~~---------------~-~~~-~~~S~g~k~r~~ia~al 197 (337)
.++.+....... ..+ .. . .... . +.. ..+|+||+||++||+|+
T Consensus 81 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~laral 160 (248)
T PRK09580 81 FMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMA 160 (248)
T ss_pred EEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHHHHH
Confidence 333222110000 000 00 0 0000 0 011 25899999999999999
Q ss_pred hhCCcEEEEcCCCCHHHHH-------HHHHHHhcCCeEEEEEcCcchhHHh-hchHHHHHhcCceEEEecCHHHH
Q 019702 198 NHMPEVIIVDEIGTEAEAH-------ACRSIAERGVMLIGTAHGEWLENII-KNPILSDLIGGVDTVTLGDEEAR 264 (337)
Q Consensus 198 ~~~P~vlilDEp~~~ld~~-------~l~~~~~~G~tvi~t~H~~~~~~~~-~d~v~~~ll~~G~iv~~g~~~~~ 264 (337)
+.+|++|++||||+++|.. .+.++++.|.|||++||+.+++..+ +|+++ ++++|+++..|+++.+
T Consensus 161 ~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~--~l~~g~i~~~g~~~~~ 233 (248)
T PRK09580 161 VLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVH--VLYQGRIVKSGDFTLV 233 (248)
T ss_pred HcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhhCCEEE--EEECCeEEEeCCHHHH
Confidence 9999999999999999953 3445556689999999999988877 89999 8999999999998854
No 213
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.94 E-value=4e-27 Score=242.63 Aligned_cols=169 Identities=17% Similarity=0.203 Sum_probs=129.6
Q ss_pred EeeEEEEECCc---------cccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCC----------------
Q 019702 97 IVGLTCRVGRA---------VSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ---------------- 151 (337)
Q Consensus 97 i~~l~~r~~~~---------~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~---------------- 151 (337)
+++++++|+.. ...+++++++.+++|++++|+||||||||||+++|+|+++|+.+
T Consensus 316 ~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~~~~ 395 (623)
T PRK10261 316 VRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGK 395 (623)
T ss_pred EeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCCHHH
Confidence 67899999621 12358999999999999999999999999999999999987621
Q ss_pred -----CeEEEEcCCcc--cccC-------------CCC-ccc----c-------ccc-----chhccCCCcchhHHHHHH
Q 019702 152 -----KRVVIVDTSNE--IGGD-------------GDI-PHS----A-------IGT-----ARRMQVPEPSLQHKVMIE 194 (337)
Q Consensus 152 -----~~i~~v~~~~e--i~~~-------------~~~-~~~----~-------~~~-----~~~~~~~S~g~k~r~~ia 194 (337)
.++.++++... +... ... ... . ++. .+....+|+||+||++||
T Consensus 396 ~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQRv~iA 475 (623)
T PRK10261 396 LQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIA 475 (623)
T ss_pred HHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHH
Confidence 12444444321 1100 000 000 0 000 123346799999999999
Q ss_pred HHHhhCCcEEEEcCCCCHHHH-------HHHHHHHhc-CCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHH
Q 019702 195 AVENHMPEVIIVDEIGTEAEA-------HACRSIAER-GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (337)
Q Consensus 195 ~al~~~P~vlilDEp~~~ld~-------~~l~~~~~~-G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~ 266 (337)
+||+.+|++||+||||+++|. +.+.+++++ |.|||++||+++++..+||+++ +|++|++++.|++++++.
T Consensus 476 raL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~--vl~~G~iv~~g~~~~i~~ 553 (623)
T PRK10261 476 RALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVA--VMYLGQIVEIGPRRAVFE 553 (623)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE--EEECCEEEEecCHHHHhc
Confidence 999999999999999999995 445566554 8999999999999999999999 999999999999999986
Q ss_pred h
Q 019702 267 R 267 (337)
Q Consensus 267 ~ 267 (337)
.
T Consensus 554 ~ 554 (623)
T PRK10261 554 N 554 (623)
T ss_pred C
Confidence 4
No 214
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=4.2e-27 Score=224.71 Aligned_cols=169 Identities=14% Similarity=0.091 Sum_probs=128.1
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccc-----cCC--------------------
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSD-----EFQ-------------------- 151 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~-----~~~-------------------- 151 (337)
+++++++|.......++++++.+.+|++++|+||||||||||+++|+|+..+ ..+
T Consensus 83 ~~nls~~y~~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr 162 (329)
T PRK14257 83 IRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELR 162 (329)
T ss_pred EEeeEEEecCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhh
Confidence 6789999964333359999999999999999999999999999999999853 211
Q ss_pred CeEEEEcCCcccccC---------C---CCccccc------------c--------cchhccCCCcchhHHHHHHHHHhh
Q 019702 152 KRVVIVDTSNEIGGD---------G---DIPHSAI------------G--------TARRMQVPEPSLQHKVMIEAVENH 199 (337)
Q Consensus 152 ~~i~~v~~~~ei~~~---------~---~~~~~~~------------~--------~~~~~~~~S~g~k~r~~ia~al~~ 199 (337)
+.+.++++...+... . ....... . .......+|+||+||++||||++.
T Consensus 163 ~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~LARAl~~ 242 (329)
T PRK14257 163 TRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARAIAL 242 (329)
T ss_pred ccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHHHHHHHHh
Confidence 234555444322110 0 0000000 0 012233479999999999999999
Q ss_pred CCcEEEEcCCCCHHHHH-------HHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHhh
Q 019702 200 MPEVIIVDEIGTEAEAH-------ACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARRC 268 (337)
Q Consensus 200 ~P~vlilDEp~~~ld~~-------~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~~ 268 (337)
+|+|||+||||+++|.. .+..+. ++.|+|++||+++.+..+||+++ +|++|++++.|++++++..+
T Consensus 243 ~p~IlLLDEPts~LD~~~~~~i~~~i~~l~-~~~Tii~iTH~l~~i~~~~Drii--vl~~G~i~e~g~~~~l~~~~ 315 (329)
T PRK14257 243 EPEVLLMDEPTSALDPIATAKIEELILELK-KKYSIIIVTHSMAQAQRISDETV--FFYQGWIEEAGETKTIFIHP 315 (329)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEE--EEECCEEEEeCCHHHHhcCC
Confidence 99999999999999953 344443 36899999999999988999999 99999999999999998753
No 215
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.94 E-value=4.6e-27 Score=211.94 Aligned_cols=159 Identities=17% Similarity=0.213 Sum_probs=117.2
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCC------------------CeEEEEc
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ------------------KRVVIVD 158 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~------------------~~i~~v~ 158 (337)
+++++++|+......++++++.+++|++++|+||||||||||+++|+|+.+|+.+ ..+.++.
T Consensus 5 ~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~ 84 (220)
T cd03245 5 FRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIGYVP 84 (220)
T ss_pred EEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEEEeC
Confidence 6789999965322359999999999999999999999999999999999987632 1234444
Q ss_pred CCcccccC--------C-CC-ccccc-------cc---ch------------hccCCCcchhHHHHHHHHHhhCCcEEEE
Q 019702 159 TSNEIGGD--------G-DI-PHSAI-------GT---AR------------RMQVPEPSLQHKVMIEAVENHMPEVIIV 206 (337)
Q Consensus 159 ~~~ei~~~--------~-~~-~~~~~-------~~---~~------------~~~~~S~g~k~r~~ia~al~~~P~vlil 206 (337)
+...+... . .. ....+ +. .. ....+|+||+||++||+|++.+|++||+
T Consensus 85 q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~llll 164 (220)
T cd03245 85 QDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLL 164 (220)
T ss_pred CCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 43322110 0 00 00000 00 01 1247899999999999999999999999
Q ss_pred cCCCCHHHHH-------HHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEec
Q 019702 207 DEIGTEAEAH-------ACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLG 259 (337)
Q Consensus 207 DEp~~~ld~~-------~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g 259 (337)
||||+++|.. .+.++++ +.|||++||+.++. .+||+++ ++++|+++..|
T Consensus 165 DEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~~~-~~~d~v~--~l~~g~i~~~~ 220 (220)
T cd03245 165 DEPTSAMDMNSEERLKERLRQLLG-DKTLIIITHRPSLL-DLVDRII--VMDSGRIVADG 220 (220)
T ss_pred eCccccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHHHH-HhCCEEE--EEeCCeEeecC
Confidence 9999999953 3444444 48999999999976 6999999 89999987653
No 216
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=6.4e-27 Score=215.31 Aligned_cols=165 Identities=15% Similarity=0.120 Sum_probs=124.7
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHcccc--c---cCCCe------------------
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLS--D---EFQKR------------------ 153 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~--~---~~~~~------------------ 153 (337)
+++++++|+... .++++++.+.+|++++|+||||||||||+++|+|++. | + .+.
T Consensus 7 ~~~l~~~~~~~~--~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~-~G~v~i~g~~~~~~~~~~~~~ 83 (251)
T PRK14251 7 AKDVHLSYGNYE--ALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKI-TGEIKFEGQNIYGSKMDLVEL 83 (251)
T ss_pred EEeeEEEECCee--eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCc-ceEEEECCEEcccccchHHHh
Confidence 679999997644 4999999999999999999999999999999999986 2 2 222
Q ss_pred ---EEEEcCCcccccC------------CCCc-cc----c-------ccc--------chhccCCCcchhHHHHHHHHHh
Q 019702 154 ---VVIVDTSNEIGGD------------GDIP-HS----A-------IGT--------ARRMQVPEPSLQHKVMIEAVEN 198 (337)
Q Consensus 154 ---i~~v~~~~ei~~~------------~~~~-~~----~-------~~~--------~~~~~~~S~g~k~r~~ia~al~ 198 (337)
+.++.+...+... .... .. . ++. ......+|+||+||++||+|++
T Consensus 84 ~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~laral~ 163 (251)
T PRK14251 84 RKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALA 163 (251)
T ss_pred hccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHHHHh
Confidence 3333332211100 0000 00 0 000 0123347999999999999999
Q ss_pred hCCcEEEEcCCCCHHHHH-------HHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHh
Q 019702 199 HMPEVIIVDEIGTEAEAH-------ACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (337)
Q Consensus 199 ~~P~vlilDEp~~~ld~~-------~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~ 267 (337)
.+|++||+|||++++|.. .+.++. ++.|||++||+.+++..+||+++ ++++|+++..|++++++..
T Consensus 164 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiiiisH~~~~~~~~~d~i~--~l~~G~i~~~~~~~~~~~~ 236 (251)
T PRK14251 164 VRPKVVLLDEPTSALDPISSSEIEETLMELK-HQYTFIMVTHNLQQAGRISDQTA--FLMNGDLIEAGPTEEMFIA 236 (251)
T ss_pred cCCCEEEecCCCccCCHHHHHHHHHHHHHHH-cCCeEEEEECCHHHHHhhcCEEE--EEECCEEEEeCCHHHHHhC
Confidence 999999999999999953 344443 47899999999999989999999 9999999999999988653
No 217
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.94 E-value=5.1e-27 Score=218.71 Aligned_cols=164 Identities=16% Similarity=0.138 Sum_probs=124.9
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccc-----cCCC-------------------
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSD-----EFQK------------------- 152 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~-----~~~~------------------- 152 (337)
+++++++|+... .++++++.+++|++++|+||||||||||+++|+|++++ . .+
T Consensus 28 ~~nl~~~~~~~~--il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~-~G~i~i~g~~i~~~~~~~~~~ 104 (272)
T PRK14236 28 VRNLNLFYGDKQ--ALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRI-EGEIRLDGQNIYDKKVDVAEL 104 (272)
T ss_pred EEEEEEEECCee--EeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCC-ceEEEECCEECcccccCHHHH
Confidence 668999997644 49999999999999999999999999999999999873 3 22
Q ss_pred --eEEEEcCCcccccC------------CCCcc-c----cc-------cc--------chhccCCCcchhHHHHHHHHHh
Q 019702 153 --RVVIVDTSNEIGGD------------GDIPH-S----AI-------GT--------ARRMQVPEPSLQHKVMIEAVEN 198 (337)
Q Consensus 153 --~i~~v~~~~ei~~~------------~~~~~-~----~~-------~~--------~~~~~~~S~g~k~r~~ia~al~ 198 (337)
.+.++.+...+... ..... . .+ +. ......+|+||+||++||+|++
T Consensus 105 ~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~ 184 (272)
T PRK14236 105 RRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIARAIA 184 (272)
T ss_pred hccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHHHHHHHH
Confidence 23344332211100 00000 0 00 00 0123457999999999999999
Q ss_pred hCCcEEEEcCCCCHHHHH-------HHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHH
Q 019702 199 HMPEVIIVDEIGTEAEAH-------ACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (337)
Q Consensus 199 ~~P~vlilDEp~~~ld~~-------~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~ 266 (337)
.+|++||+||||+++|.. .+.++.+ +.|+|++||+.+++..+||+++ ++++|+++..|+++++..
T Consensus 185 ~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~~~~~~~d~i~--~l~~G~i~~~g~~~~~~~ 256 (272)
T PRK14236 185 IEPEVLLLDEPTSALDPISTLKIEELITELKS-KYTIVIVTHNMQQAARVSDYTA--FMYMGKLVEYGDTDTLFT 256 (272)
T ss_pred CCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEeCCHHHHHhhCCEEE--EEECCEEEecCCHHHHhc
Confidence 999999999999999953 3445544 7899999999999989999999 999999999999988764
No 218
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.94 E-value=6.3e-27 Score=217.51 Aligned_cols=165 Identities=12% Similarity=0.120 Sum_probs=125.6
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccc-----cCCCe------------------
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSD-----EFQKR------------------ 153 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~-----~~~~~------------------ 153 (337)
+++++++|+... .++++++.+.+|++++|+||||||||||+++|+|+++| + .+.
T Consensus 23 ~~nl~~~~~~~~--il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~-~G~i~~~g~~~~~~~~~~~~~ 99 (267)
T PRK14237 23 TKDLHVYYGKKE--AIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARV-TGQILYRGIDINRKEINVYEM 99 (267)
T ss_pred EeeEEEEECCee--eEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCc-ceEEEECCEEcccccCChHHH
Confidence 668999997544 49999999999999999999999999999999999864 3 222
Q ss_pred ---EEEEcCCcccccC------------CCC-cccc-----------cc--------cchhccCCCcchhHHHHHHHHHh
Q 019702 154 ---VVIVDTSNEIGGD------------GDI-PHSA-----------IG--------TARRMQVPEPSLQHKVMIEAVEN 198 (337)
Q Consensus 154 ---i~~v~~~~ei~~~------------~~~-~~~~-----------~~--------~~~~~~~~S~g~k~r~~ia~al~ 198 (337)
+.++.+...+... ... .... ++ .......+|+||+||++||+|++
T Consensus 100 ~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~laral~ 179 (267)
T PRK14237 100 RKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIARAIA 179 (267)
T ss_pred hcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHHHHHHHh
Confidence 3444433221100 000 0000 00 00123457999999999999999
Q ss_pred hCCcEEEEcCCCCHHHHH-------HHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHh
Q 019702 199 HMPEVIIVDEIGTEAEAH-------ACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (337)
Q Consensus 199 ~~P~vlilDEp~~~ld~~-------~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~ 267 (337)
.+|++|++|||++++|.. .+.++. ++.+||++||+.+++..+||+++ ++++|+++..|++++++..
T Consensus 180 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiii~tH~~~~~~~~~d~i~--~l~~G~i~~~g~~~~~~~~ 252 (267)
T PRK14237 180 VKPDILLMDEPASALDPISTMQLEETMFELK-KNYTIIIVTHNMQQAARASDYTA--FFYLGDLIEYDKTRNIFTN 252 (267)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-cCCEEEEEecCHHHHHHhcCEEE--EEECCEEEEeCCHHHHhcC
Confidence 999999999999999953 344443 47899999999999989999999 9999999999999988653
No 219
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=6.3e-27 Score=218.59 Aligned_cols=166 Identities=19% Similarity=0.166 Sum_probs=126.0
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHcccccc----CCCe-------------------
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDE----FQKR------------------- 153 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~----~~~~------------------- 153 (337)
+++++++|+.... ++++++.+++|++++|+||||||||||+++|+|+++|. ..+.
T Consensus 24 i~nl~~~~~~~~i--l~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~ 101 (276)
T PRK14271 24 AVNLTLGFAGKTV--LDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRR 101 (276)
T ss_pred EeeEEEEECCEEE--eeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHHHhh
Confidence 6799999986554 99999999999999999999999999999999999752 1222
Q ss_pred -EEEEcCCcccccC-------CC------Ccccc-----------ccc--------chhccCCCcchhHHHHHHHHHhhC
Q 019702 154 -VVIVDTSNEIGGD-------GD------IPHSA-----------IGT--------ARRMQVPEPSLQHKVMIEAVENHM 200 (337)
Q Consensus 154 -i~~v~~~~ei~~~-------~~------~~~~~-----------~~~--------~~~~~~~S~g~k~r~~ia~al~~~ 200 (337)
+.++.+...+... .. ..... ++. .+....+|+||+||++||+|++.+
T Consensus 102 ~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LAral~~~ 181 (276)
T PRK14271 102 RVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLAVN 181 (276)
T ss_pred heEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHHHHHhcC
Confidence 3344332211100 00 00000 000 011335799999999999999999
Q ss_pred CcEEEEcCCCCHHHHH-------HHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHh
Q 019702 201 PEVIIVDEIGTEAEAH-------ACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (337)
Q Consensus 201 P~vlilDEp~~~ld~~-------~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~ 267 (337)
|++||+||||+++|.. .+.++.+ +.|||++||+.+++..+||+++ ++++|+++..|++++++..
T Consensus 182 p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~~~~~~~dri~--~l~~G~i~~~g~~~~~~~~ 252 (276)
T PRK14271 182 PEVLLLDEPTSALDPTTTEKIEEFIRSLAD-RLTVIIVTHNLAQAARISDRAA--LFFDGRLVEEGPTEQLFSS 252 (276)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEE--EEECCEEEEeCCHHHHHhC
Confidence 9999999999999953 3444443 5899999999999999999999 9999999999999988753
No 220
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.94 E-value=5.1e-27 Score=237.85 Aligned_cols=169 Identities=17% Similarity=0.214 Sum_probs=129.0
Q ss_pred EeeEEEEECCc--cccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccc-----cCC------------------
Q 019702 97 IVGLTCRVGRA--VSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSD-----EFQ------------------ 151 (337)
Q Consensus 97 i~~l~~r~~~~--~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~-----~~~------------------ 151 (337)
+++++++|+.. ...+++++++.+.+|++++|+||||||||||+++|+|+++| +.+
T Consensus 8 ~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 87 (529)
T PRK15134 8 IENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQTLR 87 (529)
T ss_pred EeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHHHHH
Confidence 67899999631 12359999999999999999999999999999999999986 211
Q ss_pred ----CeEEEEcCCcc--cccC--------------CCCcccc-----------ccc-------chhccCCCcchhHHHHH
Q 019702 152 ----KRVVIVDTSNE--IGGD--------------GDIPHSA-----------IGT-------ARRMQVPEPSLQHKVMI 193 (337)
Q Consensus 152 ----~~i~~v~~~~e--i~~~--------------~~~~~~~-----------~~~-------~~~~~~~S~g~k~r~~i 193 (337)
.++.++.+... +... ...+... ++. .+....+|+||+||++|
T Consensus 88 ~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~qrv~i 167 (529)
T PRK15134 88 GVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMI 167 (529)
T ss_pred HHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHHHHHHH
Confidence 13555555431 1000 0011000 000 12345689999999999
Q ss_pred HHHHhhCCcEEEEcCCCCHHHH-------HHHHHHHhc-CCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHH
Q 019702 194 EAVENHMPEVIIVDEIGTEAEA-------HACRSIAER-GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARA 265 (337)
Q Consensus 194 a~al~~~P~vlilDEp~~~ld~-------~~l~~~~~~-G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~ 265 (337)
|+||+++|++||+||||+++|. +.+.+++++ |.|||++||+++.+..+||+++ +|++|+++..|++++++
T Consensus 168 AraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~--~l~~G~i~~~g~~~~~~ 245 (529)
T PRK15134 168 AMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVA--VMQNGRCVEQNRAATLF 245 (529)
T ss_pred HHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEE--EEECCEEEEeCCHHHHh
Confidence 9999999999999999999995 345555554 8999999999999999999999 99999999999998886
Q ss_pred Hh
Q 019702 266 RR 267 (337)
Q Consensus 266 ~~ 267 (337)
..
T Consensus 246 ~~ 247 (529)
T PRK15134 246 SA 247 (529)
T ss_pred hC
Confidence 53
No 221
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.94 E-value=9.1e-27 Score=216.10 Aligned_cols=155 Identities=17% Similarity=0.154 Sum_probs=119.2
Q ss_pred cchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEE------EcCCcccccC-------------CCCc
Q 019702 110 GHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVI------VDTSNEIGGD-------------GDIP 170 (337)
Q Consensus 110 ~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~------v~~~~ei~~~-------------~~~~ 170 (337)
..++++++.+.+|++++|+||||||||||+++|+|+++|+. +.|.+ +.+...+... ....
T Consensus 38 ~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~-G~I~~~g~~~~~~~~~~~~~~~tv~enl~~~~~~~~~~ 116 (264)
T PRK13546 38 FALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTV-GKVDRNGEVSVIAISAGLSGQLTGIENIEFKMLCMGFK 116 (264)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCc-eEEEECCEEeEEecccCCCCCCcHHHHHHHHHHHcCCC
Confidence 35889999999999999999999999999999999998874 33322 2111111100 0010
Q ss_pred cccc-----------c--c--chhccCCCcchhHHHHHHHHHhhCCcEEEEcCCCCHHHHH-------HHHHHHhcCCeE
Q 019702 171 HSAI-----------G--T--ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAH-------ACRSIAERGVML 228 (337)
Q Consensus 171 ~~~~-----------~--~--~~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~~ld~~-------~l~~~~~~G~tv 228 (337)
.... + . ......+|+||+||+++|+|++.+|++||+|||++++|.. .+..+.+.|.|+
T Consensus 117 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~ti 196 (264)
T PRK13546 117 RKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTI 196 (264)
T ss_pred HHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEE
Confidence 0000 0 0 0223457999999999999999999999999999999953 355555679999
Q ss_pred EEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHh
Q 019702 229 IGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (337)
Q Consensus 229 i~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~ 267 (337)
|++||+.+++..+||+++ ++++|+++..|+++++...
T Consensus 197 IiisH~~~~i~~~~d~i~--~l~~G~i~~~g~~~~~~~~ 233 (264)
T PRK13546 197 FFVSHNLGQVRQFCTKIA--WIEGGKLKDYGELDDVLPK 233 (264)
T ss_pred EEEcCCHHHHHHHcCEEE--EEECCEEEEeCCHHHHHHH
Confidence 999999999999999999 9999999999999988764
No 222
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.94 E-value=5.9e-27 Score=212.93 Aligned_cols=154 Identities=15% Similarity=0.133 Sum_probs=117.7
Q ss_pred hhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccc----cCC----------------CeEEEEcCCcc--cccC---
Q 019702 112 IDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSD----EFQ----------------KRVVIVDTSNE--IGGD--- 166 (337)
Q Consensus 112 ~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~----~~~----------------~~i~~v~~~~e--i~~~--- 166 (337)
++++++.+++|++++|+||||||||||+++|+|+++| +.+ ..+.++.+... +...
T Consensus 2 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t~ 81 (230)
T TIGR02770 2 VQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFTM 81 (230)
T ss_pred ccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccCH
Confidence 5788999999999999999999999999999999987 422 13444444321 1000
Q ss_pred ----------CCCcccc-------------cc-----cchhccCCCcchhHHHHHHHHHhhCCcEEEEcCCCCHHHHH--
Q 019702 167 ----------GDIPHSA-------------IG-----TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAH-- 216 (337)
Q Consensus 167 ----------~~~~~~~-------------~~-----~~~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~~ld~~-- 216 (337)
....... +. .......+|+||+||++||+|++.+|++||+||||+++|..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~~ 161 (230)
T TIGR02770 82 GNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQ 161 (230)
T ss_pred HHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHH
Confidence 0000000 00 01123457999999999999999999999999999999953
Q ss_pred -----HHHHHHh-cCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHh
Q 019702 217 -----ACRSIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (337)
Q Consensus 217 -----~l~~~~~-~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~ 267 (337)
.+.++++ .|.|||++||+.+++..+||+++ ++++|+++..|++++++..
T Consensus 162 ~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~--~l~~G~i~~~~~~~~~~~~ 216 (230)
T TIGR02770 162 ARVLKLLRELRQLFGTGILLITHDLGVVARIADEVA--VMDDGRIVERGTVKEIFYN 216 (230)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE--EEECCEEEEeCCHHHHHhC
Confidence 4555555 48999999999999989999999 9999999999999988753
No 223
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.94 E-value=1e-26 Score=230.67 Aligned_cols=169 Identities=14% Similarity=0.161 Sum_probs=128.8
Q ss_pred EeeEEEEECCcc-ccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEcCC------cccccC---
Q 019702 97 IVGLTCRVGRAV-SGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTS------NEIGGD--- 166 (337)
Q Consensus 97 i~~l~~r~~~~~-~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~~~------~ei~~~--- 166 (337)
+++++++|.... ...++++++.+.+|++++|+|||||||||||++|+|+++|+ .+.|.+-... ..+...
T Consensus 24 lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~-sGeI~I~G~~~~i~~~~~l~~~lTV 102 (549)
T PRK13545 24 LKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPN-KGTVDIKGSAALIAISSGLNGQLTG 102 (549)
T ss_pred EEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCC-ceEEEECCEeeeEEeccccCCCCcH
Confidence 668888887632 23589999999999999999999999999999999999887 3444331110 000000
Q ss_pred ----------CCCccccc-----------cc----chhccCCCcchhHHHHHHHHHhhCCcEEEEcCCCCHHHHH-----
Q 019702 167 ----------GDIPHSAI-----------GT----ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAH----- 216 (337)
Q Consensus 167 ----------~~~~~~~~-----------~~----~~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~~ld~~----- 216 (337)
........ +. .+....+|+||+||++||+|++.+|++|||||||+++|..
T Consensus 103 ~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~sr~~L 182 (549)
T PRK13545 103 IENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKC 182 (549)
T ss_pred HHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHH
Confidence 00000000 00 1234457999999999999999999999999999999953
Q ss_pred --HHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHhh
Q 019702 217 --ACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARRC 268 (337)
Q Consensus 217 --~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~~ 268 (337)
.+.+++++|.|||++||+++++..+||+++ ++++|+++..|++++++...
T Consensus 183 lelL~el~~~G~TIIIVSHdl~~i~~l~DrIi--vL~~GkIv~~G~~~el~~~~ 234 (549)
T PRK13545 183 LDKMNEFKEQGKTIFFISHSLSQVKSFCTKAL--WLHYGQVKEYGDIKEVVDHY 234 (549)
T ss_pred HHHHHHHHhCCCEEEEEECCHHHHHHhCCEEE--EEECCEEEEECCHHHHHhhH
Confidence 455556678999999999999999999999 99999999999999887653
No 224
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=9e-27 Score=214.38 Aligned_cols=165 Identities=13% Similarity=0.143 Sum_probs=125.0
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHcccc--c---cCCCe------------------
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLS--D---EFQKR------------------ 153 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~--~---~~~~~------------------ 153 (337)
+++++++|+... .++++++.+.+|++++|+||||||||||+++|+|+.. | + .+.
T Consensus 8 ~~~l~~~~~~~~--~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~-~G~i~~~g~~i~~~~~~~~~~ 84 (251)
T PRK14244 8 VKNLNLWYGSKQ--ILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKV-KGELDIDGIDVYSVDTNVVLL 84 (251)
T ss_pred eeeEEEEECCee--eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCc-ceEEEECCEehHhcccchHHH
Confidence 678999997544 4999999999999999999999999999999999975 2 2 222
Q ss_pred ---EEEEcCCcccccC------------CCCc-c-cc-----------ccc--------chhccCCCcchhHHHHHHHHH
Q 019702 154 ---VVIVDTSNEIGGD------------GDIP-H-SA-----------IGT--------ARRMQVPEPSLQHKVMIEAVE 197 (337)
Q Consensus 154 ---i~~v~~~~ei~~~------------~~~~-~-~~-----------~~~--------~~~~~~~S~g~k~r~~ia~al 197 (337)
+.++.+...+... .... . .. ++. ......+|+||+||++||+|+
T Consensus 85 ~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral 164 (251)
T PRK14244 85 RAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAI 164 (251)
T ss_pred hhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHHHHH
Confidence 3444433221100 0000 0 00 000 012335799999999999999
Q ss_pred hhCCcEEEEcCCCCHHHH-------HHHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHh
Q 019702 198 NHMPEVIIVDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (337)
Q Consensus 198 ~~~P~vlilDEp~~~ld~-------~~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~ 267 (337)
+.+|++||+||||+++|. +.+.++. +|.|||++||+.+++..+||+++ ++++|+++..|++++++..
T Consensus 165 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiiisH~~~~~~~~~d~i~--~l~~G~i~~~~~~~~~~~~ 238 (251)
T PRK14244 165 AVKPTMLLMDEPCSALDPVATNVIENLIQELK-KNFTIIVVTHSMKQAKKVSDRVA--FFQSGRIVEYNTTQEIFKN 238 (251)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHHHHHhhcCEEE--EEECCEEEEeCCHHHHhcC
Confidence 999999999999999995 3344443 48999999999999989999999 9999999999999888653
No 225
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=9e-27 Score=214.63 Aligned_cols=166 Identities=12% Similarity=0.070 Sum_probs=124.7
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccc--c--CCCe-------------------
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSD--E--FQKR------------------- 153 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~--~--~~~~------------------- 153 (337)
+++++++|+.... ++++++.+++|++++|+||||||||||+++|+|++.+ + ..+.
T Consensus 9 ~~~l~~~~~~~~~--l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 86 (253)
T PRK14261 9 TKNLNLWYGEKHA--LYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVALR 86 (253)
T ss_pred EeeeEEEECCeee--eeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhhhh
Confidence 6689999976544 9999999999999999999999999999999998752 1 0222
Q ss_pred --EEEEcCCccccc---------C---CCC-ccc----cc-------cc--------chhccCCCcchhHHHHHHHHHhh
Q 019702 154 --VVIVDTSNEIGG---------D---GDI-PHS----AI-------GT--------ARRMQVPEPSLQHKVMIEAVENH 199 (337)
Q Consensus 154 --i~~v~~~~ei~~---------~---~~~-~~~----~~-------~~--------~~~~~~~S~g~k~r~~ia~al~~ 199 (337)
+.++.+...+.. . ... ... .+ +. ......+|+||+||+++|+|++.
T Consensus 87 ~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~ 166 (253)
T PRK14261 87 RKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLAV 166 (253)
T ss_pred ceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHHHHHHhc
Confidence 334433322110 0 000 000 00 00 01233479999999999999999
Q ss_pred CCcEEEEcCCCCHHHHH-------HHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHh
Q 019702 200 MPEVIIVDEIGTEAEAH-------ACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (337)
Q Consensus 200 ~P~vlilDEp~~~ld~~-------~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~ 267 (337)
+|+++++|||++++|.. .+..+.+ +.|||++||+.+.+..+||+++ ++++|+++..|++++++..
T Consensus 167 ~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~-~~tvii~sh~~~~~~~~~d~v~--~l~~G~i~~~g~~~~~~~~ 238 (253)
T PRK14261 167 NPEVILMDEPCSALDPIATAKIEDLIEDLKK-EYTVIIVTHNMQQAARVSDYTG--FMYLGKLIEFDKTTQIFEN 238 (253)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHhh-CceEEEEEcCHHHHHhhCCEEE--EEECCEEEEcCCHHHHHhC
Confidence 99999999999999953 3444444 6899999999999989999999 9999999999999988653
No 226
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=9.6e-27 Score=218.41 Aligned_cols=165 Identities=12% Similarity=0.100 Sum_probs=124.5
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHcccc--c---cCCCe------------------
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLS--D---EFQKR------------------ 153 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~--~---~~~~~------------------ 153 (337)
+++++++|+... .++++++.+.+|++++|+||||||||||+++|+|+.. | + .+.
T Consensus 42 ~~~l~~~~~~~~--il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~-~G~I~~~g~~i~~~~~~~~~~ 118 (286)
T PRK14275 42 AKNFSIYYGEFE--AVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHT-TGALMFDGEDIYGKFTDEVLL 118 (286)
T ss_pred EeeeEEEECCEE--EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCC-ceEEEECCEEhhhcccchHHh
Confidence 668999997544 4999999999999999999999999999999999864 3 3 222
Q ss_pred ---EEEEcCCcccccC------------CCCcc-c----cc-------cc--------chhccCCCcchhHHHHHHHHHh
Q 019702 154 ---VVIVDTSNEIGGD------------GDIPH-S----AI-------GT--------ARRMQVPEPSLQHKVMIEAVEN 198 (337)
Q Consensus 154 ---i~~v~~~~ei~~~------------~~~~~-~----~~-------~~--------~~~~~~~S~g~k~r~~ia~al~ 198 (337)
+.++.+...+... ..... . .+ +. ......+|+||+||++||+|++
T Consensus 119 ~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~ 198 (286)
T PRK14275 119 RKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVARTLA 198 (286)
T ss_pred hhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHHHHHHHh
Confidence 3444433221100 00000 0 00 00 1123457999999999999999
Q ss_pred hCCcEEEEcCCCCHHHHH-------HHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHh
Q 019702 199 HMPEVIIVDEIGTEAEAH-------ACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (337)
Q Consensus 199 ~~P~vlilDEp~~~ld~~-------~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~ 267 (337)
.+|++||+||||+++|.. .+.++.+ +.|||++||+.+++..+||+++ ++++|+++..|++++++..
T Consensus 199 ~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tvIivsH~~~~~~~~~d~i~--~L~~G~i~~~g~~~~~~~~ 271 (286)
T PRK14275 199 VEPEILLLDEPTSALDPKATAKIEDLIQELRG-SYTIMIVTHNMQQASRVSDYTM--FFYEGVLVEHAPTAQLFTN 271 (286)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHHHHHHhCCEEE--EEECCEEEEeCCHHHHHhC
Confidence 999999999999999953 3444433 6899999999999999999999 9999999999999988653
No 227
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=9.8e-27 Score=215.22 Aligned_cols=166 Identities=13% Similarity=0.139 Sum_probs=124.4
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHcccccc----CCCe-------------------
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDE----FQKR------------------- 153 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~----~~~~------------------- 153 (337)
+++++++|++.. .++++++.+.+|++++|+|+||||||||+++|+|+++|+ ..+.
T Consensus 10 ~~~l~~~~~~~~--il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~ 87 (259)
T PRK14260 10 VKDLSFYYNTSK--AIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRLR 87 (259)
T ss_pred EEEEEEEECCeE--eecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHhhh
Confidence 678999997644 499999999999999999999999999999999998752 1232
Q ss_pred --EEEEcCCcccccC-------------CCCcccc----c-------cc--------chhccCCCcchhHHHHHHHHHhh
Q 019702 154 --VVIVDTSNEIGGD-------------GDIPHSA----I-------GT--------ARRMQVPEPSLQHKVMIEAVENH 199 (337)
Q Consensus 154 --i~~v~~~~ei~~~-------------~~~~~~~----~-------~~--------~~~~~~~S~g~k~r~~ia~al~~ 199 (337)
+.++.+...+... ...+... . +. ......+|+||+||++||+|++.
T Consensus 88 ~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~ 167 (259)
T PRK14260 88 RQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALAI 167 (259)
T ss_pred hheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhc
Confidence 3333332211100 0000000 0 00 01223579999999999999999
Q ss_pred CCcEEEEcCCCCHHHH-------HHHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhc-----CceEEEecCHHHHHHh
Q 019702 200 MPEVIIVDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIG-----GVDTVTLGDEEARARR 267 (337)
Q Consensus 200 ~P~vlilDEp~~~ld~-------~~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~-----~G~iv~~g~~~~~~~~ 267 (337)
+|++|++||||+++|. +.+.++.+ +.|||++||+++++..+||+++ +++ +|+++..|++++++..
T Consensus 168 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~~i~~~~d~i~--~l~~~~~~~G~i~~~~~~~~~~~~ 244 (259)
T PRK14260 168 KPKVLLMDEPCSALDPIATMKVEELIHSLRS-ELTIAIVTHNMQQATRVSDFTA--FFSTDESRIGQMVEFGVTTQIFSN 244 (259)
T ss_pred CCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhcCeEE--EEeccCCCCceEEEeCCHHHHhcC
Confidence 9999999999999995 33444443 6899999999999999999999 886 5999999999998753
No 228
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.94 E-value=4.1e-27 Score=242.59 Aligned_cols=168 Identities=16% Similarity=0.194 Sum_probs=128.1
Q ss_pred EeeEEEEECCc--cccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCe---------------------
Q 019702 97 IVGLTCRVGRA--VSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKR--------------------- 153 (337)
Q Consensus 97 i~~l~~r~~~~--~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~--------------------- 153 (337)
+++++++|... ...++++++|.+++|++++|+||||||||||+++|+|+++|+. +.
T Consensus 15 v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~-G~i~~~g~~~~~~~~~~~~~~~~ 93 (623)
T PRK10261 15 VENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAG-GLVQCDKMLLRRRSRQVIELSEQ 93 (623)
T ss_pred EeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCC-eEEEECCEEeccccccccccccC
Confidence 67899999632 1235999999999999999999999999999999999998762 22
Q ss_pred ------------EEEEcCCc--ccccC--------------CCCcccc-----------ccc-------chhccCCCcch
Q 019702 154 ------------VVIVDTSN--EIGGD--------------GDIPHSA-----------IGT-------ARRMQVPEPSL 187 (337)
Q Consensus 154 ------------i~~v~~~~--ei~~~--------------~~~~~~~-----------~~~-------~~~~~~~S~g~ 187 (337)
+.++.+.. .+... ..+.... ++. .+....+|+||
T Consensus 94 ~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~LSgGq 173 (623)
T PRK10261 94 SAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGM 173 (623)
T ss_pred CHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCccCCHHH
Confidence 33333321 01000 0000000 000 12334579999
Q ss_pred hHHHHHHHHHhhCCcEEEEcCCCCHHHH-------HHHHHHHhc-CCeEEEEEcCcchhHHhhchHHHHHhcCceEEEec
Q 019702 188 QHKVMIEAVENHMPEVIIVDEIGTEAEA-------HACRSIAER-GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLG 259 (337)
Q Consensus 188 k~r~~ia~al~~~P~vlilDEp~~~ld~-------~~l~~~~~~-G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g 259 (337)
+||++||+||+.+|++||+||||+++|. +.+.++.++ |.|||++||+++++..+||+++ +|++|+++..|
T Consensus 174 ~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~--vl~~G~i~~~g 251 (623)
T PRK10261 174 RQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVL--VMYQGEAVETG 251 (623)
T ss_pred HHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEE--EeeCCeecccC
Confidence 9999999999999999999999999995 345566544 8999999999999999999999 99999999999
Q ss_pred CHHHHHHh
Q 019702 260 DEEARARR 267 (337)
Q Consensus 260 ~~~~~~~~ 267 (337)
++++++..
T Consensus 252 ~~~~~~~~ 259 (623)
T PRK10261 252 SVEQIFHA 259 (623)
T ss_pred CHHHhhcC
Confidence 99988754
No 229
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.94 E-value=1.2e-26 Score=213.51 Aligned_cols=162 Identities=16% Similarity=0.138 Sum_probs=121.2
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHcc--ccccCCCeE--------------------
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARV--LSDEFQKRV-------------------- 154 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gl--l~~~~~~~i-------------------- 154 (337)
+++++++|+... .++++++.+.+|++++|+|+||||||||+++|+|+ ++|+. +.+
T Consensus 10 ~~~l~~~~~~~~--~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~-G~i~~~g~~~~~~~~~~~~~~~~ 86 (252)
T CHL00131 10 IKNLHASVNENE--ILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILE-GDILFKGESILDLEPEERAHLGI 86 (252)
T ss_pred EEeEEEEeCCEE--eeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCC-ceEEECCEEcccCChhhhheeeE
Confidence 678999997544 49999999999999999999999999999999998 35542 222
Q ss_pred EEEcCCccccc-----------CC------CCcc-------cc-------ccc-----chhcc-CCCcchhHHHHHHHHH
Q 019702 155 VIVDTSNEIGG-----------DG------DIPH-------SA-------IGT-----ARRMQ-VPEPSLQHKVMIEAVE 197 (337)
Q Consensus 155 ~~v~~~~ei~~-----------~~------~~~~-------~~-------~~~-----~~~~~-~~S~g~k~r~~ia~al 197 (337)
.++.+...+.. .. .... .. ++. ..... .+|+||+||++||+|+
T Consensus 87 ~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al 166 (252)
T CHL00131 87 FLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMA 166 (252)
T ss_pred EEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHHHHHHHH
Confidence 22322211000 00 0000 00 000 01222 4899999999999999
Q ss_pred hhCCcEEEEcCCCCHHHH-------HHHHHHHhcCCeEEEEEcCcchhHHh-hchHHHHHhcCceEEEecCHHH
Q 019702 198 NHMPEVIIVDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENII-KNPILSDLIGGVDTVTLGDEEA 263 (337)
Q Consensus 198 ~~~P~vlilDEp~~~ld~-------~~l~~~~~~G~tvi~t~H~~~~~~~~-~d~v~~~ll~~G~iv~~g~~~~ 263 (337)
+.+|++||+||||+++|. +.+.+++++|.|||++||+.+++..+ ||+++ ++++|+++..|+++.
T Consensus 167 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~--~l~~G~i~~~~~~~~ 238 (252)
T CHL00131 167 LLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVH--VMQNGKIIKTGDAEL 238 (252)
T ss_pred HcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEE--EEeCCEEEEecChhh
Confidence 999999999999999995 34555566689999999999988876 89999 999999999999883
No 230
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.94 E-value=1.1e-26 Score=215.55 Aligned_cols=165 Identities=15% Similarity=0.130 Sum_probs=124.3
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccc-----cCCCe------------------
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSD-----EFQKR------------------ 153 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~-----~~~~~------------------ 153 (337)
+++++++|+... .++++++.+++|++++|+||||||||||+++|+|++.+ + .+.
T Consensus 13 i~~v~~~~~~~~--il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~-~G~i~~~g~~i~~~~~~~~~~ 89 (264)
T PRK14243 13 TENLNVYYGSFL--AVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRV-EGKVTFHGKNLYAPDVDPVEV 89 (264)
T ss_pred EeeeEEEECCEE--EeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCC-ceEEEECCEEccccccChHHH
Confidence 678999997654 49999999999999999999999999999999998752 2 222
Q ss_pred ---EEEEcCCcccccC------------CCCccc---cc-------cc--------chhccCCCcchhHHHHHHHHHhhC
Q 019702 154 ---VVIVDTSNEIGGD------------GDIPHS---AI-------GT--------ARRMQVPEPSLQHKVMIEAVENHM 200 (337)
Q Consensus 154 ---i~~v~~~~ei~~~------------~~~~~~---~~-------~~--------~~~~~~~S~g~k~r~~ia~al~~~ 200 (337)
+.++.+...+... ...... .. +. .+....+|+||+||++||+|++.+
T Consensus 90 ~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~laral~~~ 169 (264)
T PRK14243 90 RRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAIAVQ 169 (264)
T ss_pred hhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHHHHhcC
Confidence 3333332211100 000000 00 00 012334799999999999999999
Q ss_pred CcEEEEcCCCCHHHHH-------HHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhc---------CceEEEecCHHHH
Q 019702 201 PEVIIVDEIGTEAEAH-------ACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIG---------GVDTVTLGDEEAR 264 (337)
Q Consensus 201 P~vlilDEp~~~ld~~-------~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~---------~G~iv~~g~~~~~ 264 (337)
|++||+|||++++|.. .+..+.+ +.|||++||+.+.+..+||+++ +++ .|++++.|+++++
T Consensus 170 p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tvi~vtH~~~~~~~~~d~v~--~l~~~~~~~~~~~g~i~~~~~~~~~ 246 (264)
T PRK14243 170 PEVILMDEPCSALDPISTLRIEELMHELKE-QYTIIIVTHNMQQAARVSDMTA--FFNVELTEGGGRYGYLVEFDRTEKI 246 (264)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHHHHHHhCCEEE--EEecccccccccCceEEEeCCHHHH
Confidence 9999999999999953 3444444 5899999999999999999999 887 7999999999998
Q ss_pred HHh
Q 019702 265 ARR 267 (337)
Q Consensus 265 ~~~ 267 (337)
+..
T Consensus 247 ~~~ 249 (264)
T PRK14243 247 FNS 249 (264)
T ss_pred HhC
Confidence 764
No 231
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=1.2e-26 Score=235.14 Aligned_cols=166 Identities=16% Similarity=0.205 Sum_probs=127.1
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCC-------CeEEEEcCCcccccCC--
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ-------KRVVIVDTSNEIGGDG-- 167 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~-------~~i~~v~~~~ei~~~~-- 167 (337)
+++++++|+.... ++++++.+++|++++|+|||||||||||++|+|+++|+.+ .++.++.+...+....
T Consensus 4 i~~ls~~~~~~~i--l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~tv 81 (530)
T PRK15064 4 TANITMQFGAKPL--FENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPNERLGKLRQDQFAFEEFTV 81 (530)
T ss_pred EEEEEEEeCCcEe--EeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCcCCCCcH
Confidence 6799999976544 9999999999999999999999999999999999988632 2344554432111000
Q ss_pred ----------------------CCc-----------------------c--cc-------ccc-----chhccCCCcchh
Q 019702 168 ----------------------DIP-----------------------H--SA-------IGT-----ARRMQVPEPSLQ 188 (337)
Q Consensus 168 ----------------------~~~-----------------------~--~~-------~~~-----~~~~~~~S~g~k 188 (337)
..+ . .. ++. .+....+|+||+
T Consensus 82 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGq~ 161 (530)
T PRK15064 82 LDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLMSEVAPGWK 161 (530)
T ss_pred HHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCchhhcCHHHH
Confidence 000 0 00 000 023456899999
Q ss_pred HHHHHHHHHhhCCcEEEEcCCCCHHHHHH---HH-HHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceE-EEecCHHH
Q 019702 189 HKVMIEAVENHMPEVIIVDEIGTEAEAHA---CR-SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDT-VTLGDEEA 263 (337)
Q Consensus 189 ~r~~ia~al~~~P~vlilDEp~~~ld~~~---l~-~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~i-v~~g~~~~ 263 (337)
||++||+|++.+|++|+|||||+++|... +. .+.+.|.|||++||+.+++..+||+++ ++++|++ ++.|++++
T Consensus 162 qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~d~i~--~l~~g~i~~~~g~~~~ 239 (530)
T PRK15064 162 LRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNERNSTMIIISHDRHFLNSVCTHMA--DLDYGELRVYPGNYDE 239 (530)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcceEE--EEeCCEEEEecCCHHH
Confidence 99999999999999999999999999643 22 234568999999999999999999999 9999998 47899887
Q ss_pred HHH
Q 019702 264 RAR 266 (337)
Q Consensus 264 ~~~ 266 (337)
+..
T Consensus 240 ~~~ 242 (530)
T PRK15064 240 YMT 242 (530)
T ss_pred HHH
Confidence 654
No 232
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.94 E-value=1e-26 Score=209.77 Aligned_cols=160 Identities=13% Similarity=0.177 Sum_probs=118.9
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCC------------------CeEEEEc
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ------------------KRVVIVD 158 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~------------------~~i~~v~ 158 (337)
+++++++|+......++++++.+++|++++|+||||||||||+++|+|+++|+.+ ..+.+++
T Consensus 5 ~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~ 84 (221)
T cd03244 5 FKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRISIIP 84 (221)
T ss_pred EEEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhEEEEC
Confidence 6689999975322359999999999999999999999999999999999988732 1234444
Q ss_pred CCcccccC------C---CCcccc-------ccc---c------------hhccCCCcchhHHHHHHHHHhhCCcEEEEc
Q 019702 159 TSNEIGGD------G---DIPHSA-------IGT---A------------RRMQVPEPSLQHKVMIEAVENHMPEVIIVD 207 (337)
Q Consensus 159 ~~~ei~~~------~---~~~~~~-------~~~---~------------~~~~~~S~g~k~r~~ia~al~~~P~vlilD 207 (337)
+...+... . ...... .+. . .....+|+||+||++||+|++.+|++|++|
T Consensus 85 q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllD 164 (221)
T cd03244 85 QDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLD 164 (221)
T ss_pred CCCccccchHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 33221100 0 000000 000 0 134568999999999999999999999999
Q ss_pred CCCCHHHHH-------HHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecC
Q 019702 208 EIGTEAEAH-------ACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGD 260 (337)
Q Consensus 208 Ep~~~ld~~-------~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~ 260 (337)
||++++|.. .+.++. ++.|+|++||+.+++.. ||+++ ++++|+++..|+
T Consensus 165 EP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~~~~-~d~i~--~l~~g~~~~~~~ 220 (221)
T cd03244 165 EATASVDPETDALIQKTIREAF-KDCTVLTIAHRLDTIID-SDRIL--VLDKGRVVEFDS 220 (221)
T ss_pred CccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHHHhh-CCEEE--EEECCeEEecCC
Confidence 999999953 333433 46899999999998865 99999 999999988765
No 233
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=1.4e-26 Score=217.29 Aligned_cols=165 Identities=17% Similarity=0.138 Sum_probs=123.4
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccc-----cCCCe------------------
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSD-----EFQKR------------------ 153 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~-----~~~~~------------------ 153 (337)
+++++++|+... .++++++.+.+|++++|+||||||||||+++|+|++++ + .+.
T Consensus 42 i~~l~~~~~~~~--il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~-~G~I~i~G~~i~~~~~~~~~~ 118 (285)
T PRK14254 42 ARDLNVFYGDEQ--ALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARV-EGELTFRGKNVYDADVDPVAL 118 (285)
T ss_pred EEEEEEEECCEe--eEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCC-ceEEEECCEEccccccchHhh
Confidence 668999997644 49999999999999999999999999999999999862 3 222
Q ss_pred ---EEEEcCCcccccC------------CCCccc---c-------ccc--------chhccCCCcchhHHHHHHHHHhhC
Q 019702 154 ---VVIVDTSNEIGGD------------GDIPHS---A-------IGT--------ARRMQVPEPSLQHKVMIEAVENHM 200 (337)
Q Consensus 154 ---i~~v~~~~ei~~~------------~~~~~~---~-------~~~--------~~~~~~~S~g~k~r~~ia~al~~~ 200 (337)
+.++.+...+... ...+.. . ++. ......+|+||+||++||+|++.+
T Consensus 119 ~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LAraL~~~ 198 (285)
T PRK14254 119 RRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAIAPD 198 (285)
T ss_pred hccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHHHHHHcC
Confidence 3344333221100 000000 0 000 122345799999999999999999
Q ss_pred CcEEEEcCCCCHHHHH-------HHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHH
Q 019702 201 PEVIIVDEIGTEAEAH-------ACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (337)
Q Consensus 201 P~vlilDEp~~~ld~~-------~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~ 266 (337)
|++||+|||++++|.. ++.++++ +.|||++||+.+++..+||+++. ++++|+++..|++++++.
T Consensus 199 p~lLLLDEPts~LD~~~~~~l~~~L~~~~~-~~tiii~tH~~~~i~~~~dri~v-~l~~G~i~~~g~~~~~~~ 269 (285)
T PRK14254 199 PEVILMDEPASALDPVATSKIEDLIEELAE-EYTVVIVTHNMQQAARISDKTAV-FLTGGELVEFDDTDKIFE 269 (285)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHhhcCEEEE-EeeCCEEEEeCCHHHHHh
Confidence 9999999999999953 3455544 47999999999999999999640 569999999999988765
No 234
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.94 E-value=6e-27 Score=211.54 Aligned_cols=155 Identities=19% Similarity=0.204 Sum_probs=120.7
Q ss_pred cchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEc---CC--cc----cc----------cC----
Q 019702 110 GHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD---TS--NE----IG----------GD---- 166 (337)
Q Consensus 110 ~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~---~~--~e----i~----------~~---- 166 (337)
.++.+++|.+++|++++++|||||||||+|++|+|++.|+ +++|-+.. .+ .+ ++ ++
T Consensus 38 ~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~-~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~~ 116 (325)
T COG4586 38 EAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPT-SGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPAL 116 (325)
T ss_pred hhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccC-CCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeechhh
Confidence 4688999999999999999999999999999999999998 45554431 11 00 00 00
Q ss_pred ---------CCCccccc-------------c--cchhccCCCcchhHHHHHHHHHhhCCcEEEEcCCCCHHHH-------
Q 019702 167 ---------GDIPHSAI-------------G--TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEA------- 215 (337)
Q Consensus 167 ---------~~~~~~~~-------------~--~~~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~~ld~------- 215 (337)
..+|...+ . ...++..+|.||+.|+.+|++|.++|+||+|||||-++|+
T Consensus 117 ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir 196 (325)
T COG4586 117 DSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIR 196 (325)
T ss_pred hhHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHHH
Confidence 00010000 0 0123445799999999999999999999999999999995
Q ss_pred HHHHHHH-hcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHh
Q 019702 216 HACRSIA-ERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (337)
Q Consensus 216 ~~l~~~~-~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~ 267 (337)
+.+++.. +.+.||+.|||+++.+..+|++++ +++.|++++.|+.+++...
T Consensus 197 ~Flke~n~~~~aTVllTTH~~~di~~lc~rv~--~I~~Gqlv~dg~l~~l~~~ 247 (325)
T COG4586 197 EFLKEYNEERQATVLLTTHIFDDIATLCDRVL--LIDQGQLVFDGTLAQLQEQ 247 (325)
T ss_pred HHHHHHHHhhCceEEEEecchhhHHHhhhheE--EeeCCcEeecccHHHHHHH
Confidence 3344444 458999999999999999999999 9999999999999988765
No 235
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.94 E-value=1.1e-26 Score=216.65 Aligned_cols=165 Identities=13% Similarity=0.136 Sum_probs=124.0
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCe-------------------EEEE
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKR-------------------VVIV 157 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~-------------------i~~v 157 (337)
+++++++|.......++++++.+++|++++|+||||||||||+++|+|++. . .+. +.++
T Consensus 5 ~~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~-~G~I~i~g~~i~~~~~~~lr~~i~~v 82 (275)
T cd03289 5 VKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-T-EGDIQIDGVSWNSVPLQKWRKAFGVI 82 (275)
T ss_pred EEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-C-CcEEEECCEEhhhCCHHHHhhhEEEE
Confidence 679999995433335999999999999999999999999999999999986 3 233 4444
Q ss_pred cCCcccccC---------CCCccccc-------cc---c-hhcc-----------CCCcchhHHHHHHHHHhhCCcEEEE
Q 019702 158 DTSNEIGGD---------GDIPHSAI-------GT---A-RRMQ-----------VPEPSLQHKVMIEAVENHMPEVIIV 206 (337)
Q Consensus 158 ~~~~ei~~~---------~~~~~~~~-------~~---~-~~~~-----------~~S~g~k~r~~ia~al~~~P~vlil 206 (337)
++...+... .......+ +. . .... .+|+||+||+++|+|++.+|++|++
T Consensus 83 ~q~~~lf~~tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~illl 162 (275)
T cd03289 83 PQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLL 162 (275)
T ss_pred CCCcccchhhHHHHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 443322100 00000000 00 0 1111 2899999999999999999999999
Q ss_pred cCCCCHHHHHH-------HHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHh
Q 019702 207 DEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (337)
Q Consensus 207 DEp~~~ld~~~-------l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~ 267 (337)
||||+++|... +.+. ..+.|||++||+++.+. .||+++ +|++|+++..|+|++++..
T Consensus 163 DEpts~LD~~~~~~l~~~l~~~-~~~~tii~isH~~~~i~-~~dri~--vl~~G~i~~~g~~~~l~~~ 226 (275)
T cd03289 163 DEPSAHLDPITYQVIRKTLKQA-FADCTVILSEHRIEAML-ECQRFL--VIEENKVRQYDSIQKLLNE 226 (275)
T ss_pred ECccccCCHHHHHHHHHHHHHh-cCCCEEEEEECCHHHHH-hCCEEE--EecCCeEeecCCHHHHhhC
Confidence 99999999532 3332 34799999999998876 499999 9999999999999999874
No 236
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.94 E-value=7.4e-27 Score=235.11 Aligned_cols=164 Identities=18% Similarity=0.217 Sum_probs=126.7
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccc--cCC-------------------CeEE
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSD--EFQ-------------------KRVV 155 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~--~~~-------------------~~i~ 155 (337)
+++++++|+... .++++++.+++|++++|+||||||||||+++|+|+++| +.+ ..+.
T Consensus 4 i~~l~~~~~~~~--il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 81 (500)
T TIGR02633 4 MKGIVKTFGGVK--ALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGIV 81 (500)
T ss_pred EEeEEEEeCCeE--eecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCEE
Confidence 678999997644 49999999999999999999999999999999999976 311 1245
Q ss_pred EEcCCcccccC---------C-C-------Cccc----c-------ccc-----chhccCCCcchhHHHHHHHHHhhCCc
Q 019702 156 IVDTSNEIGGD---------G-D-------IPHS----A-------IGT-----ARRMQVPEPSLQHKVMIEAVENHMPE 202 (337)
Q Consensus 156 ~v~~~~ei~~~---------~-~-------~~~~----~-------~~~-----~~~~~~~S~g~k~r~~ia~al~~~P~ 202 (337)
++.+...+... . . .... . ++. .+....+|+||+||++||+|++.+|+
T Consensus 82 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~~p~ 161 (500)
T TIGR02633 82 IIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQAR 161 (500)
T ss_pred EEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHhhCCC
Confidence 55443221100 0 0 0000 0 000 01245689999999999999999999
Q ss_pred EEEEcCCCCHHHH-------HHHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHH
Q 019702 203 VIIVDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEAR 264 (337)
Q Consensus 203 vlilDEp~~~ld~-------~~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~ 264 (337)
+||+||||+++|. +.+.++++.|.|||++||+.+++..+||+++ ++++|+++..+++++.
T Consensus 162 lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~--~l~~G~i~~~~~~~~~ 228 (500)
T TIGR02633 162 LLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTIC--VIRDGQHVATKDMSTM 228 (500)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEE--EEeCCeEeeecCcccC
Confidence 9999999999995 3455566679999999999999999999999 9999999999887654
No 237
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.94 E-value=1.2e-26 Score=242.70 Aligned_cols=168 Identities=18% Similarity=0.176 Sum_probs=130.1
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCC------------------CeEEEEc
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ------------------KRVVIVD 158 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~------------------~~i~~v~ 158 (337)
+++++++|+......++++++.+++|+.++|+||||||||||++.|+|++.|+.| +.+.+++
T Consensus 480 ~~~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~ 559 (710)
T TIGR03796 480 LRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVD 559 (710)
T ss_pred EEEEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhheeEEe
Confidence 6799999986444469999999999999999999999999999999999998732 2345565
Q ss_pred CCcccccC----------CCCccccccc----------------------chhccCCCcchhHHHHHHHHHhhCCcEEEE
Q 019702 159 TSNEIGGD----------GDIPHSAIGT----------------------ARRMQVPEPSLQHKVMIEAVENHMPEVIIV 206 (337)
Q Consensus 159 ~~~ei~~~----------~~~~~~~~~~----------------------~~~~~~~S~g~k~r~~ia~al~~~P~vlil 206 (337)
|...+... .......+.. ...-..+||||+||++||||+..+|++|++
T Consensus 560 Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~iliL 639 (710)
T TIGR03796 560 QDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILIL 639 (710)
T ss_pred cCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCCCEEEE
Confidence 54433210 0011110000 011234799999999999999999999999
Q ss_pred cCCCCHHHHHH----HHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHh
Q 019702 207 DEIGTEAEAHA----CRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (337)
Q Consensus 207 DEp~~~ld~~~----l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~ 267 (337)
||||+++|.+. ...+.+.+.|+|++||..+... .||+++ +|++|++++.|+++++...
T Consensus 640 DEptS~LD~~te~~i~~~l~~~~~T~IiitHrl~~i~-~~D~Ii--vl~~G~i~~~G~~~~Ll~~ 701 (710)
T TIGR03796 640 DEATSALDPETEKIIDDNLRRRGCTCIIVAHRLSTIR-DCDEII--VLERGKVVQRGTHEELWAV 701 (710)
T ss_pred ECccccCCHHHHHHHHHHHHhcCCEEEEEecCHHHHH-hCCEEE--EEeCCEEEEecCHHHHHHc
Confidence 99999999532 3344556899999999998774 599999 9999999999999998753
No 238
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.94 E-value=5.6e-27 Score=213.21 Aligned_cols=149 Identities=18% Similarity=0.226 Sum_probs=112.0
Q ss_pred hhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEE--------------EcCCcccccCCCC---------
Q 019702 113 DMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVI--------------VDTSNEIGGDGDI--------- 169 (337)
Q Consensus 113 ~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~--------------v~~~~ei~~~~~~--------- 169 (337)
+++++.+.+|++++|+||||||||||+++|+|+++|+. +.|.+ +.+...+.....+
T Consensus 2 ~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~-G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~~~~ 80 (230)
T TIGR01184 2 KGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTS-GGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIALAVD 80 (230)
T ss_pred CceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC-ceEEECCEECCCCChhheEEecCcccCCCCCHHHHHHHHHH
Confidence 57889999999999999999999999999999998873 43432 2222111100000
Q ss_pred ---cc---cc----c-------cc----chhccCCCcchhHHHHHHHHHhhCCcEEEEcCCCCHHHH-------HHHHHH
Q 019702 170 ---PH---SA----I-------GT----ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEA-------HACRSI 221 (337)
Q Consensus 170 ---~~---~~----~-------~~----~~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~~ld~-------~~l~~~ 221 (337)
+. .. + +. .+....+|+||+||++||+|++.+|++||+||||+++|. +.+.++
T Consensus 81 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~ 160 (230)
T TIGR01184 81 RVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQI 160 (230)
T ss_pred hcccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHH
Confidence 00 00 0 00 022334799999999999999999999999999999995 335555
Q ss_pred Hh-cCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHH
Q 019702 222 AE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEAR 264 (337)
Q Consensus 222 ~~-~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~ 264 (337)
.+ .|.|||++||+.+++..+||+++ ++++|+++..|++.++
T Consensus 161 ~~~~~~tii~~sH~~~~~~~~~d~v~--~l~~G~i~~~~~~~~~ 202 (230)
T TIGR01184 161 WEEHRVTVLMVTHDVDEALLLSDRVV--MLTNGPAANIGQILEV 202 (230)
T ss_pred HHhcCCEEEEEeCCHHHHHHhcCEEE--EEeCCcEecccCceec
Confidence 54 48999999999999999999999 9999999988876554
No 239
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.94 E-value=2e-26 Score=212.98 Aligned_cols=167 Identities=13% Similarity=0.070 Sum_probs=124.8
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCC------------------CeEEEEc
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ------------------KRVVIVD 158 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~------------------~~i~~v~ 158 (337)
+++++++|+......++++++.+++|++++|+|+||||||||+++|+|+++|..+ ..+.++.
T Consensus 22 ~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~i~~v~ 101 (257)
T cd03288 22 IHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSRLSIIL 101 (257)
T ss_pred EEEEEEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhhhEEEEC
Confidence 6689999975322359999999999999999999999999999999999987632 1234444
Q ss_pred CCcccccC-----CCCc----ccccc-------c---c------------hhccCCCcchhHHHHHHHHHhhCCcEEEEc
Q 019702 159 TSNEIGGD-----GDIP----HSAIG-------T---A------------RRMQVPEPSLQHKVMIEAVENHMPEVIIVD 207 (337)
Q Consensus 159 ~~~ei~~~-----~~~~----~~~~~-------~---~------------~~~~~~S~g~k~r~~ia~al~~~P~vlilD 207 (337)
+...+... .... ...+. . . .....+|+||+||+++|+|++.+|++||+|
T Consensus 102 q~~~l~~~tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllD 181 (257)
T cd03288 102 QDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMD 181 (257)
T ss_pred CCCcccccHHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 43222110 0000 00000 0 0 112358999999999999999999999999
Q ss_pred CCCCHHHHHH-------HHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHh
Q 019702 208 EIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (337)
Q Consensus 208 Ep~~~ld~~~-------l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~ 267 (337)
|||+++|... +..+ .++.|+|++||+.+.... ||+++ +|++|+++..|+++++...
T Consensus 182 EPt~gLD~~~~~~l~~~l~~~-~~~~tiii~sh~~~~~~~-~dri~--~l~~G~i~~~g~~~~~~~~ 244 (257)
T cd03288 182 EATASIDMATENILQKVVMTA-FADRTVVTIAHRVSTILD-ADLVL--VLSRGILVECDTPENLLAQ 244 (257)
T ss_pred CCccCCCHHHHHHHHHHHHHh-cCCCEEEEEecChHHHHh-CCEEE--EEECCEEEEeCCHHHHHhc
Confidence 9999999533 2232 348999999999998865 99999 9999999999999987653
No 240
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.94 E-value=1e-26 Score=234.08 Aligned_cols=161 Identities=16% Similarity=0.155 Sum_probs=123.1
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCC-------------------CeEEEE
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ-------------------KRVVIV 157 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~-------------------~~i~~v 157 (337)
+++++++|++.. .++++++.+++|++++|+||||||||||+++|+|+++|+.+ ..+.++
T Consensus 7 ~~~l~~~~~~~~--il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v 84 (501)
T PRK11288 7 FDGIGKTFPGVK--ALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGVAII 84 (501)
T ss_pred EeeeEEEECCEE--EEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCEEEE
Confidence 678999997654 49999999999999999999999999999999999987632 124444
Q ss_pred cCCcccccC---------C------C-Ccccc----c-------c----cchhccCCCcchhHHHHHHHHHhhCCcEEEE
Q 019702 158 DTSNEIGGD---------G------D-IPHSA----I-------G----TARRMQVPEPSLQHKVMIEAVENHMPEVIIV 206 (337)
Q Consensus 158 ~~~~ei~~~---------~------~-~~~~~----~-------~----~~~~~~~~S~g~k~r~~ia~al~~~P~vlil 206 (337)
.+...+... . . ..... + + ..+....+|+||+||++||+|++.+|++||+
T Consensus 85 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllL 164 (501)
T PRK11288 85 YQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAF 164 (501)
T ss_pred EechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 433211100 0 0 00000 0 0 0122345799999999999999999999999
Q ss_pred cCCCCHHHH-------HHHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCH
Q 019702 207 DEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDE 261 (337)
Q Consensus 207 DEp~~~ld~-------~~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~ 261 (337)
||||+++|. +.+.+++++|.|||++||+.+++..+||+++ +|++|+++..+++
T Consensus 165 DEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~--~l~~G~i~~~~~~ 224 (501)
T PRK11288 165 DEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAIT--VFKDGRYVATFDD 224 (501)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEE--EEECCEEEeecCc
Confidence 999999995 3455556679999999999999999999999 9999999876654
No 241
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.94 E-value=8.6e-27 Score=207.97 Aligned_cols=146 Identities=14% Similarity=0.198 Sum_probs=106.9
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEE--------------------
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVI-------------------- 156 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~-------------------- 156 (337)
+++++++|+... .++++++.+++|++++|+||||||||||+++|+|+++|+. +.|.+
T Consensus 1 i~~l~~~~~~~~--~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~-G~i~~~g~~~~~~~~~~~~~~~~~~ 77 (206)
T TIGR03608 1 LKNISKKFGDKI--ILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDS-GQVYLNGKETPPLNSKKASKFRREK 77 (206)
T ss_pred CcceEEEECCEE--EEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCC-eEEEECCEEccccchhhHHHHHHhC
Confidence 358999997644 4999999999999999999999999999999999998873 33332
Q ss_pred ---EcCCcccccCCCCccc-----------------ccc-c----------chhccCCCcchhHHHHHHHHHhhCCcEEE
Q 019702 157 ---VDTSNEIGGDGDIPHS-----------------AIG-T----------ARRMQVPEPSLQHKVMIEAVENHMPEVII 205 (337)
Q Consensus 157 ---v~~~~ei~~~~~~~~~-----------------~~~-~----------~~~~~~~S~g~k~r~~ia~al~~~P~vli 205 (337)
+.+...+.....+.++ .+. . .+....+|+||+||++||+|++.+|++||
T Consensus 78 i~~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~~p~lll 157 (206)
T TIGR03608 78 LGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKDPPLIL 157 (206)
T ss_pred eeEEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence 2221111000000000 000 0 02234479999999999999999999999
Q ss_pred EcCCCCHHHH-------HHHHHHHhcCCeEEEEEcCcchhHHhhchHH
Q 019702 206 VDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPIL 246 (337)
Q Consensus 206 lDEp~~~ld~-------~~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~ 246 (337)
+||||+++|. +.+.++.++|.|+|++||+.+.. .+||+++
T Consensus 158 lDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~-~~~d~i~ 204 (206)
T TIGR03608 158 ADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVA-KQADRVI 204 (206)
T ss_pred EeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH-hhcCEEE
Confidence 9999999995 34555556689999999999866 4788876
No 242
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=2.1e-26 Score=213.66 Aligned_cols=165 Identities=12% Similarity=0.132 Sum_probs=124.5
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHcccccc----CCCeE------------------
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDE----FQKRV------------------ 154 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~----~~~~i------------------ 154 (337)
+++++++|.... .++++++.+++|++++|+|+||||||||+++|+|++.|. ..+.|
T Consensus 19 ~~~l~~~~~~~~--vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~~~~ 96 (265)
T PRK14252 19 VNKLNFYYGGYQ--ALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDPIE 96 (265)
T ss_pred EEEEEEEECCee--eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccccCHHH
Confidence 569999997654 499999999999999999999999999999999998741 12333
Q ss_pred -----EEEcCCcccccC------------CCCcc-----cc-------ccc--------chhccCCCcchhHHHHHHHHH
Q 019702 155 -----VIVDTSNEIGGD------------GDIPH-----SA-------IGT--------ARRMQVPEPSLQHKVMIEAVE 197 (337)
Q Consensus 155 -----~~v~~~~ei~~~------------~~~~~-----~~-------~~~--------~~~~~~~S~g~k~r~~ia~al 197 (337)
.++.+...+... ...+. .. .+. .+....+|+|++||++||+|+
T Consensus 97 ~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral 176 (265)
T PRK14252 97 VRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIARAL 176 (265)
T ss_pred HhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHHHHHHHHH
Confidence 333322111000 00000 00 000 012344799999999999999
Q ss_pred hhCCcEEEEcCCCCHHHHH-------HHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHH
Q 019702 198 NHMPEVIIVDEIGTEAEAH-------ACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (337)
Q Consensus 198 ~~~P~vlilDEp~~~ld~~-------~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~ 266 (337)
+.+|++|++||||+++|.. .+.++.+ +.|+|++||+.+++..+||+++ ++++|+++..|++++++.
T Consensus 177 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-~~tiiivth~~~~~~~~~d~i~--~l~~G~i~~~g~~~~~~~ 249 (265)
T PRK14252 177 ATDPEILLFDEPTSALDPIATASIEELISDLKN-KVTILIVTHNMQQAARVSDYTA--YMYMGELIEFGATDTIFI 249 (265)
T ss_pred HcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEecCHHHHHHhCCEEE--EEECCEEEEeCCHHHHHh
Confidence 9999999999999999953 3444443 6899999999999999999999 999999999999988875
No 243
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=1.8e-26 Score=213.87 Aligned_cols=166 Identities=13% Similarity=0.095 Sum_probs=124.0
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHcccccc----CCCe-------------------
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDE----FQKR------------------- 153 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~----~~~~------------------- 153 (337)
++.++++|++... ++++++.+++|++++|+|+||||||||+++|+|+++|. ..+.
T Consensus 11 ~~~~~~~~~~~~~--l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~ 88 (261)
T PRK14263 11 CKLDKIFYGNFMA--VRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVR 88 (261)
T ss_pred EEeEEEEeCCEEE--EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHhhh
Confidence 5578888876554 99999999999999999999999999999999999761 1233
Q ss_pred --EEEEcCCcccccCC-------C-----Cccc---ccc-cc--------------hhccCCCcchhHHHHHHHHHhhCC
Q 019702 154 --VVIVDTSNEIGGDG-------D-----IPHS---AIG-TA--------------RRMQVPEPSLQHKVMIEAVENHMP 201 (337)
Q Consensus 154 --i~~v~~~~ei~~~~-------~-----~~~~---~~~-~~--------------~~~~~~S~g~k~r~~ia~al~~~P 201 (337)
+.++.+...+.... . .... .+. .+ .....+|+||+||++||+|++.+|
T Consensus 89 ~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~laral~~~p 168 (261)
T PRK14263 89 RYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIATEP 168 (261)
T ss_pred hceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHHcCC
Confidence 33333322111000 0 0000 000 00 112347999999999999999999
Q ss_pred cEEEEcCCCCHHHH-------HHHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhc--------CceEEEecCHHHHHH
Q 019702 202 EVIIVDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIG--------GVDTVTLGDEEARAR 266 (337)
Q Consensus 202 ~vlilDEp~~~ld~-------~~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~--------~G~iv~~g~~~~~~~ 266 (337)
++|++||||+++|. +.+.++. ++.|+|++||+.+++..+||+++ +++ +|++++.|++++++.
T Consensus 169 ~llllDEPtsgLD~~~~~~l~~~l~~~~-~~~tii~isH~~~~i~~~~d~v~--~l~~~~~~~~~~G~i~~~g~~~~~~~ 245 (261)
T PRK14263 169 EVLLLDEPCSALDPIATRRVEELMVELK-KDYTIALVTHNMQQAIRVADTTA--FFSVDISQGTRTGYLVEMGPTAQIFQ 245 (261)
T ss_pred CEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHHHHHHhCCEEE--EEecccccccCCceEEEeCCHHHHHh
Confidence 99999999999995 3344443 47899999999999999999999 885 899999999999876
Q ss_pred h
Q 019702 267 R 267 (337)
Q Consensus 267 ~ 267 (337)
.
T Consensus 246 ~ 246 (261)
T PRK14263 246 N 246 (261)
T ss_pred C
Confidence 4
No 244
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=3.3e-26 Score=216.64 Aligned_cols=166 Identities=18% Similarity=0.159 Sum_probs=124.4
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccc-----cCC--------------------
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSD-----EFQ-------------------- 151 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~-----~~~-------------------- 151 (337)
+++++++|+... .++++++.+.+|++++|+||||||||||+++|+|+++| +.+
T Consensus 48 i~nl~~~~~~~~--iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~~~~~ 125 (305)
T PRK14264 48 VEDLDVYYGDDH--ALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLVELR 125 (305)
T ss_pred EEEEEEEeCCee--eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccHHHHh
Confidence 668999997654 49999999999999999999999999999999999862 311
Q ss_pred CeEEEEcCCcccccC-------CC-----------------Ccccc-----c-------cc--------chhccCCCcch
Q 019702 152 KRVVIVDTSNEIGGD-------GD-----------------IPHSA-----I-------GT--------ARRMQVPEPSL 187 (337)
Q Consensus 152 ~~i~~v~~~~ei~~~-------~~-----------------~~~~~-----~-------~~--------~~~~~~~S~g~ 187 (337)
..+.|+.+...+... .. ..... + +. ......+|+||
T Consensus 126 ~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq 205 (305)
T PRK14264 126 KRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNALGLSGGQ 205 (305)
T ss_pred hceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCccccCCHHH
Confidence 124444443221100 00 00000 0 00 01234479999
Q ss_pred hHHHHHHHHHhhCCcEEEEcCCCCHHHH-------HHHHHHHhcCCeEEEEEcCcchhHHhhchH-HHHHhcCceEEEec
Q 019702 188 QHKVMIEAVENHMPEVIIVDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPI-LSDLIGGVDTVTLG 259 (337)
Q Consensus 188 k~r~~ia~al~~~P~vlilDEp~~~ld~-------~~l~~~~~~G~tvi~t~H~~~~~~~~~d~v-~~~ll~~G~iv~~g 259 (337)
+||++||+||+++|++||+|||++++|. +.+.++++ +.|+|++||+.+.+..+||++ + ++++|+++..|
T Consensus 206 ~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~~i~~~~d~i~~--~l~~G~i~~~g 282 (305)
T PRK14264 206 QQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAE-EYTVVVVTHNMQQAARISDQTAV--FLTGGELVEYD 282 (305)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHHHHHHhcCEEEE--EecCCEEEEeC
Confidence 9999999999999999999999999995 33445544 589999999999999999996 5 67999999999
Q ss_pred CHHHHHHh
Q 019702 260 DEEARARR 267 (337)
Q Consensus 260 ~~~~~~~~ 267 (337)
++++++..
T Consensus 283 ~~~~~~~~ 290 (305)
T PRK14264 283 DTDKIFEN 290 (305)
T ss_pred CHHHHHhC
Confidence 99988754
No 245
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.93 E-value=1.1e-26 Score=210.56 Aligned_cols=158 Identities=15% Similarity=0.224 Sum_probs=114.4
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCe-------------------EEEE
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKR-------------------VVIV 157 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~-------------------i~~v 157 (337)
++++++.|+... .++++++.+++|++++|+||||||||||+++|+|+++|+. +. +.++
T Consensus 10 ~~~l~~~~~~~~--il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~-G~i~~~g~~~~~~~~~~~~~~i~~~ 86 (225)
T PRK10247 10 LQNVGYLAGDAK--ILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTS-GTLLFEGEDISTLKPEIYRQQVSYC 86 (225)
T ss_pred EeccEEeeCCce--eeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCC-CeEEECCEEcCcCCHHHHHhccEEE
Confidence 668999997654 4999999999999999999999999999999999998773 33 3333
Q ss_pred cCCcccccC------------CCCcc--ccc-------cc-----chhccCCCcchhHHHHHHHHHhhCCcEEEEcCCCC
Q 019702 158 DTSNEIGGD------------GDIPH--SAI-------GT-----ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGT 211 (337)
Q Consensus 158 ~~~~ei~~~------------~~~~~--~~~-------~~-----~~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~ 211 (337)
.+...+... ..... ..+ +. .+....+|+|++||++||+|++.+|++||+||||+
T Consensus 87 ~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~ 166 (225)
T PRK10247 87 AQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITS 166 (225)
T ss_pred ecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 332211100 00000 000 00 02234579999999999999999999999999999
Q ss_pred HHHHH-------HHHHHHh-cCCeEEEEEcCcchhHHhhchHHHHHhc-CceEEEecC
Q 019702 212 EAEAH-------ACRSIAE-RGVMLIGTAHGEWLENIIKNPILSDLIG-GVDTVTLGD 260 (337)
Q Consensus 212 ~ld~~-------~l~~~~~-~G~tvi~t~H~~~~~~~~~d~v~~~ll~-~G~iv~~g~ 260 (337)
++|.. .+.++.+ .|.|||++||+.+++. .||+++ +++ ++..+++|.
T Consensus 167 ~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~-~~d~i~--~l~~~~~~~~~~~ 221 (225)
T PRK10247 167 ALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEIN-HADKVI--TLQPHAGEMQEAR 221 (225)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHH-hCCEEE--EEecccchHhhhh
Confidence 99953 3445544 4899999999999886 699998 663 444444443
No 246
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.93 E-value=1.4e-26 Score=211.31 Aligned_cols=154 Identities=18% Similarity=0.214 Sum_probs=112.5
Q ss_pred EEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCC-----------------eEEEEc-CCccc
Q 019702 102 CRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK-----------------RVVIVD-TSNEI 163 (337)
Q Consensus 102 ~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~-----------------~i~~v~-~~~ei 163 (337)
..|+... .++++++.+++|++++|+||||||||||+++|+|+++|+.+. .+.++. +...+
T Consensus 29 ~~~~~~~--il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 106 (236)
T cd03267 29 RKYREVE--ALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQL 106 (236)
T ss_pred cccCCee--eeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEEEEcCCcccc
Confidence 3444443 489999999999999999999999999999999999887321 223332 21111
Q ss_pred ccCC-------------CCcccc----c-------cc----chhccCCCcchhHHHHHHHHHhhCCcEEEEcCCCCHHHH
Q 019702 164 GGDG-------------DIPHSA----I-------GT----ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEA 215 (337)
Q Consensus 164 ~~~~-------------~~~~~~----~-------~~----~~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~~ld~ 215 (337)
.... ...... + +. ......+|+||+||+++|+|++.+|++|++||||+++|.
T Consensus 107 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~ 186 (236)
T cd03267 107 WWDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDV 186 (236)
T ss_pred CCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCH
Confidence 1000 000000 0 00 012334799999999999999999999999999999995
Q ss_pred -------HHHHHHHhc-CCeEEEEEcCcchhHHhhchHHHHHhcCceEEEec
Q 019702 216 -------HACRSIAER-GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLG 259 (337)
Q Consensus 216 -------~~l~~~~~~-G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g 259 (337)
+.+.+++++ |.|||++||+.+++..+||+++ ++++|++++.|
T Consensus 187 ~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~--~l~~G~i~~~g 236 (236)
T cd03267 187 VAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVL--VIDKGRLLYDG 236 (236)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEE--EEeCCEEEecC
Confidence 335555543 8899999999999999999999 89999987654
No 247
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.93 E-value=2.4e-26 Score=232.44 Aligned_cols=167 Identities=21% Similarity=0.248 Sum_probs=126.2
Q ss_pred EeeEEEEECC---ccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEE-----------------
Q 019702 97 IVGLTCRVGR---AVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVI----------------- 156 (337)
Q Consensus 97 i~~l~~r~~~---~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~----------------- 156 (337)
+++++++|.. .....++++++.+++|++++|+||||||||||+++|+|+++|+ .+.|.+
T Consensus 282 ~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~-~G~i~~~~g~~~~~~~~~~~~~~ 360 (520)
T TIGR03269 282 VRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPT-SGEVNVRVGDEWVDMTKPGPDGR 360 (520)
T ss_pred EeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CeEEEEecCCccccccccchhhH
Confidence 6789999952 1122589999999999999999999999999999999999876 344433
Q ss_pred ---------EcCCcccccCC------------CCccc----c-------ccc---------chhccCCCcchhHHHHHHH
Q 019702 157 ---------VDTSNEIGGDG------------DIPHS----A-------IGT---------ARRMQVPEPSLQHKVMIEA 195 (337)
Q Consensus 157 ---------v~~~~ei~~~~------------~~~~~----~-------~~~---------~~~~~~~S~g~k~r~~ia~ 195 (337)
+.+...+.... ..+.. . ++. .+....+|+||+||++||+
T Consensus 361 ~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~lar 440 (520)
T TIGR03269 361 GRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQ 440 (520)
T ss_pred HHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHHHHHH
Confidence 22211110000 00000 0 000 1223457999999999999
Q ss_pred HHhhCCcEEEEcCCCCHHHH-------HHHHHHHhc-CCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHH
Q 019702 196 VENHMPEVIIVDEIGTEAEA-------HACRSIAER-GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (337)
Q Consensus 196 al~~~P~vlilDEp~~~ld~-------~~l~~~~~~-G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~ 266 (337)
|++.+|++||+||||+++|. +.+.+++++ |.|||++||+.+++..+||+++ ++++|+++..|++++++.
T Consensus 441 al~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~--~l~~G~i~~~g~~~~~~~ 517 (520)
T TIGR03269 441 VLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAA--LMRDGKIVKIGDPEEIVE 517 (520)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEE--EEECCEEEEECCHHHHHh
Confidence 99999999999999999995 345555544 8999999999999999999999 999999999999988764
No 248
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.93 E-value=4.1e-26 Score=232.47 Aligned_cols=166 Identities=14% Similarity=0.161 Sum_probs=127.0
Q ss_pred EeeEEEEEC-CccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCC-------CeEEEEcCCcccccC--
Q 019702 97 IVGLTCRVG-RAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ-------KRVVIVDTSNEIGGD-- 166 (337)
Q Consensus 97 i~~l~~r~~-~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~-------~~i~~v~~~~ei~~~-- 166 (337)
+++++++|+ ... .++++++.+++|++++|+|||||||||||++|+|+++|+.| ..+.++++...+...
T Consensus 9 i~~l~~~y~~~~~--il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~~~~t 86 (556)
T PRK11819 9 MNRVSKVVPPKKQ--ILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPGIKVGYLPQEPQLDPEKT 86 (556)
T ss_pred EeeEEEEeCCCCe--eeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCCCCCc
Confidence 679999997 444 49999999999999999999999999999999999988733 245666664332110
Q ss_pred ------CCC-------------------cc--------------------------cc---------c-ccchhccCCCc
Q 019702 167 ------GDI-------------------PH--------------------------SA---------I-GTARRMQVPEP 185 (337)
Q Consensus 167 ------~~~-------------------~~--------------------------~~---------~-~~~~~~~~~S~ 185 (337)
... +. .. + ...+....+|+
T Consensus 87 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~LSg 166 (556)
T PRK11819 87 VRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPPWDAKVTKLSG 166 (556)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCCcccCchhhcCH
Confidence 000 00 00 0 00123446899
Q ss_pred chhHHHHHHHHHhhCCcEEEEcCCCCHHHHHHHH----HHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEE-EecC
Q 019702 186 SLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR----SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTV-TLGD 260 (337)
Q Consensus 186 g~k~r~~ia~al~~~P~vlilDEp~~~ld~~~l~----~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv-~~g~ 260 (337)
||+||++||+|++.+|++|||||||+++|..... .+.+.+.|||++||+.+++..+||+++ ++++|+++ ..|+
T Consensus 167 Gqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~~tviiisHd~~~~~~~~d~i~--~l~~g~i~~~~g~ 244 (556)
T PRK11819 167 GERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYPGTVVAVTHDRYFLDNVAGWIL--ELDRGRGIPWEGN 244 (556)
T ss_pred HHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcCeEE--EEeCCEEEEecCC
Confidence 9999999999999999999999999999964432 223445699999999999999999999 99999976 7788
Q ss_pred HHHHHH
Q 019702 261 EEARAR 266 (337)
Q Consensus 261 ~~~~~~ 266 (337)
.++...
T Consensus 245 ~~~~~~ 250 (556)
T PRK11819 245 YSSWLE 250 (556)
T ss_pred HHHHHH
Confidence 887654
No 249
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.93 E-value=2.8e-26 Score=239.09 Aligned_cols=168 Identities=17% Similarity=0.177 Sum_probs=128.5
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCC------------------CeEEEEc
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ------------------KRVVIVD 158 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~------------------~~i~~v~ 158 (337)
+++++++|+......++++++.+++|+.++|+|+||||||||++.|+|++.|+.| ..+.+++
T Consensus 454 ~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~ 533 (686)
T TIGR03797 454 VDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVL 533 (686)
T ss_pred EEEEEEEcCCCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccEEEc
Confidence 6799999965434469999999999999999999999999999999999998732 2345555
Q ss_pred CCcccccC-------CC--Cccccccc-c---------------------hhccCCCcchhHHHHHHHHHhhCCcEEEEc
Q 019702 159 TSNEIGGD-------GD--IPHSAIGT-A---------------------RRMQVPEPSLQHKVMIEAVENHMPEVIIVD 207 (337)
Q Consensus 159 ~~~ei~~~-------~~--~~~~~~~~-~---------------------~~~~~~S~g~k~r~~ia~al~~~P~vlilD 207 (337)
|...+... .. .....+.. + ..-..+||||+||+++|||+..+|++|++|
T Consensus 534 Q~~~lf~gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~iLiLD 613 (686)
T TIGR03797 534 QNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFD 613 (686)
T ss_pred cCCccCcccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 54433210 00 11110000 0 111347999999999999999999999999
Q ss_pred CCCCHHHHHH----HHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHh
Q 019702 208 EIGTEAEAHA----CRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (337)
Q Consensus 208 Ep~~~ld~~~----l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~ 267 (337)
|||+++|.+. ...+.+.+.|+|++||..+... .+|+++ +|++|++++.|+.+++.+.
T Consensus 614 EpTS~LD~~te~~i~~~L~~~~~T~IiItHr~~~i~-~~D~Ii--vl~~G~iv~~G~~~~Ll~~ 674 (686)
T TIGR03797 614 EATSALDNRTQAIVSESLERLKVTRIVIAHRLSTIR-NADRIY--VLDAGRVVQQGTYDELMAR 674 (686)
T ss_pred CCccCCCHHHHHHHHHHHHHhCCeEEEEecChHHHH-cCCEEE--EEECCEEEEECCHHHHHhC
Confidence 9999999532 3334444789999999998774 599999 9999999999999998753
No 250
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.93 E-value=2e-26 Score=207.35 Aligned_cols=148 Identities=15% Similarity=0.164 Sum_probs=111.3
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCC---------------eEEEEcCCc
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK---------------RVVIVDTSN 161 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~---------------~i~~v~~~~ 161 (337)
+++++++|+... .++++++.+++|++++|+||||||||||+++|+|+++|+.+. .+.++.+..
T Consensus 14 ~~~l~~~~~~~~--il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~~~~i~~~~q~~ 91 (214)
T PRK13543 14 AHALAFSRNEEP--VFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAYLGHLP 91 (214)
T ss_pred EeeEEEecCCce--eeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhhhhceEEeecCc
Confidence 678999997654 499999999999999999999999999999999999887321 133443322
Q ss_pred ccccCCCCcc--------------cccc-c----------chhccCCCcchhHHHHHHHHHhhCCcEEEEcCCCCHHHH-
Q 019702 162 EIGGDGDIPH--------------SAIG-T----------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEA- 215 (337)
Q Consensus 162 ei~~~~~~~~--------------~~~~-~----------~~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~~ld~- 215 (337)
.+.....+.+ .... . ......+|+||+||+++|++++.+|++|++|||++++|.
T Consensus 92 ~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~ 171 (214)
T PRK13543 92 GLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLE 171 (214)
T ss_pred ccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHH
Confidence 2110000000 0000 0 122335799999999999999999999999999999995
Q ss_pred ------HHHHHHHhcCCeEEEEEcCcchhHHhhchHH
Q 019702 216 ------HACRSIAERGVMLIGTAHGEWLENIIKNPIL 246 (337)
Q Consensus 216 ------~~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~ 246 (337)
+.+.++.++|.|+|++||+.+++..+|++++
T Consensus 172 ~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~~~i~ 208 (214)
T PRK13543 172 GITLVNRMISAHLRGGGAALVTTHGAYAAPPVRTRML 208 (214)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEecChhhhhhhcceEE
Confidence 3445556678999999999999999999987
No 251
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.93 E-value=1.6e-26 Score=212.52 Aligned_cols=160 Identities=13% Similarity=0.185 Sum_probs=119.8
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCe-------------------EEEE
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKR-------------------VVIV 157 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~-------------------i~~v 157 (337)
+++++++ ..++++++.+++|++++|+||||||||||+++|+|++++ .+. +.++
T Consensus 3 ~~~l~~~------~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~--~G~i~~~g~~i~~~~~~~~~~~i~~v 74 (248)
T PRK03695 3 LNDVAVS------TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG--SGSIQFAGQPLEAWSAAELARHRAYL 74 (248)
T ss_pred ccccchh------ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC--CeEEEECCEecCcCCHHHHhhheEEe
Confidence 4467764 148899999999999999999999999999999999853 233 3333
Q ss_pred cCCcccccC---------C---CCccc----cc-------cc----chhccCCCcchhHHHHHHHHHhh-------CCcE
Q 019702 158 DTSNEIGGD---------G---DIPHS----AI-------GT----ARRMQVPEPSLQHKVMIEAVENH-------MPEV 203 (337)
Q Consensus 158 ~~~~ei~~~---------~---~~~~~----~~-------~~----~~~~~~~S~g~k~r~~ia~al~~-------~P~v 203 (337)
.+....... . ..... .+ +. .+....+|+||+||++||+|++. +|++
T Consensus 75 ~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~l 154 (248)
T PRK03695 75 SQQQTPPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQL 154 (248)
T ss_pred cccCccCCCccHHHHHHhcCccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCE
Confidence 332111100 0 00000 00 00 02234579999999999999997 6799
Q ss_pred EEEcCCCCHHHH-------HHHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHH
Q 019702 204 IIVDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (337)
Q Consensus 204 lilDEp~~~ld~-------~~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~ 266 (337)
||+|||++++|. +.+.++.++|.|||++||+.+++..+||+++ ++++|+++..|+++++..
T Consensus 155 lllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~--~l~~G~i~~~g~~~~~~~ 222 (248)
T PRK03695 155 LLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVW--LLKQGKLLASGRRDEVLT 222 (248)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEE--EEECCEEEEECCHHHHhC
Confidence 999999999995 3455556678999999999999999999999 999999999999988764
No 252
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.93 E-value=2.4e-26 Score=205.05 Aligned_cols=155 Identities=11% Similarity=0.086 Sum_probs=115.4
Q ss_pred EeeEEEEECCcc---ccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCC-----CeEEEEcCCcccccC--
Q 019702 97 IVGLTCRVGRAV---SGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ-----KRVVIVDTSNEIGGD-- 166 (337)
Q Consensus 97 i~~l~~r~~~~~---~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~-----~~i~~v~~~~ei~~~-- 166 (337)
+++++++|+... ...++++++.+++|++++|+||||||||||+++|+|+++|+.+ +++.++.+...+...
T Consensus 3 ~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g~i~~~~q~~~l~~~t~ 82 (204)
T cd03250 3 VEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGSIAYVSQEPWIQNGTI 82 (204)
T ss_pred EeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcCEEEEEecCchhccCcH
Confidence 678999997641 1359999999999999999999999999999999999988743 235666655332110
Q ss_pred -------CCCccccc-------cc---------------chhccCCCcchhHHHHHHHHHhhCCcEEEEcCCCCHHHHHH
Q 019702 167 -------GDIPHSAI-------GT---------------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA 217 (337)
Q Consensus 167 -------~~~~~~~~-------~~---------------~~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~~ld~~~ 217 (337)
........ .. ......+|+||+||+++|+|++.+|+++++|||++++|...
T Consensus 83 ~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD~~~ 162 (204)
T cd03250 83 RENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHV 162 (204)
T ss_pred HHHhccCCCcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHH
Confidence 00000000 00 01234589999999999999999999999999999999532
Q ss_pred ---H-----HHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCce
Q 019702 218 ---C-----RSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVD 254 (337)
Q Consensus 218 ---l-----~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~ 254 (337)
+ ....+.|.|||++||+.+.+.. ||+++ ++++|+
T Consensus 163 ~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~-~d~i~--~l~~G~ 204 (204)
T cd03250 163 GRHIFENCILGLLLNNKTRILVTHQLQLLPH-ADQIV--VLDNGR 204 (204)
T ss_pred HHHHHHHHHHHhccCCCEEEEEeCCHHHHhh-CCEEE--EEeCCC
Confidence 2 2223458999999999998877 99998 787763
No 253
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=4.1e-26 Score=209.83 Aligned_cols=165 Identities=14% Similarity=0.101 Sum_probs=124.7
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHcccc--c---cCCCe------------------
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLS--D---EFQKR------------------ 153 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~--~---~~~~~------------------ 153 (337)
++++++.|+... .++++++.+.+|++++|+||||||||||+++|+|++. | + .+.
T Consensus 6 ~~~v~~~~~~~~--~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~-~G~v~~~g~~i~~~~~~~~~~ 82 (250)
T PRK14266 6 VENLNTYFDDAH--ILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRH-EGHIYLDGVDIYDPAVDVVEL 82 (250)
T ss_pred EEeEEEEeCCeE--EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCC-ccEEEECCEEcccccccHHHH
Confidence 668999997544 4999999999999999999999999999999999864 2 3 222
Q ss_pred ---EEEEcCCcccccC------------CCC-ccccc-----------cc--------chhccCCCcchhHHHHHHHHHh
Q 019702 154 ---VVIVDTSNEIGGD------------GDI-PHSAI-----------GT--------ARRMQVPEPSLQHKVMIEAVEN 198 (337)
Q Consensus 154 ---i~~v~~~~ei~~~------------~~~-~~~~~-----------~~--------~~~~~~~S~g~k~r~~ia~al~ 198 (337)
+.++.+...+... ... ..... +. ......+|+||+||++||+|++
T Consensus 83 ~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~ 162 (250)
T PRK14266 83 RKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTIA 162 (250)
T ss_pred hhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHHHHH
Confidence 3444333221100 000 00000 00 0123457999999999999999
Q ss_pred hCCcEEEEcCCCCHHHHH-------HHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHh
Q 019702 199 HMPEVIIVDEIGTEAEAH-------ACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (337)
Q Consensus 199 ~~P~vlilDEp~~~ld~~-------~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~ 267 (337)
.+|++|++|||++++|.. .+.+++ +|.|+|++||+.+++..+|++++ ++++|+++..|+++++...
T Consensus 163 ~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~~~tiii~sh~~~~~~~~~~~i~--~l~~G~i~~~g~~~~~~~~ 235 (250)
T PRK14266 163 VSPEVILMDEPCSALDPISTTKIEDLIHKLK-EDYTIVIVTHNMQQATRVSKYTS--FFLNGEIIESGLTDQIFIN 235 (250)
T ss_pred cCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEECCHHHHHhhcCEEE--EEECCeEEEeCCHHHHHhC
Confidence 999999999999999953 344443 47899999999999999999999 8999999999999988654
No 254
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=99.93 E-value=6.8e-25 Score=203.34 Aligned_cols=217 Identities=30% Similarity=0.522 Sum_probs=161.1
Q ss_pred eEEEEecCCccEEEEeCccCceeccCCCCCHHHHHHHHHHHhcc----------------CCCcceEecCce----eEEE
Q 019702 29 LEVILDLGRLPEARYLGEFGGKYLRSTEVSVEELEYAQSAVGEF----------------GGDNRAGIEGTL----HRIS 88 (337)
Q Consensus 29 ~ei~l~~g~~~~~~~~g~~~~~~~~~~~~t~~~l~~~~~~~~~~----------------~~~~~~~~~g~~----~rv~ 88 (337)
+||+|++|+|..+.+.+... +.....+|.++|+.+++.++.| .+++|+++.+.- ..+.
T Consensus 1 ~eiri~inrP~~v~~~~~~~--~~~~~~lt~~~l~~l~~~la~~s~~~~~~~~~~~~~tlpgG~Rv~i~~~p~~~~g~v~ 78 (270)
T TIGR02858 1 EEIRIRVGRPLELVFDGEEV--FVTDYIPTVEDVNYILQLISNYSLYAFEEELKQGYITIEGGHRVGLAGRCVTENGKVK 78 (270)
T ss_pred CeEEEECCCCCEEEECCCCE--EEecccCCHHHHHHHHHHHHhccccccccccccceEEcCCCcEEEEEccceecCCEEE
Confidence 59999999999997755432 4445569999999999888554 467788887762 3555
Q ss_pred EEeeCCCcEeeEEEEECCccccchhhhhhcc-cCC--CEEEEEcCCCCcHHHHHHHHHccccccCC------CeEEEEcC
Q 019702 89 AIRSRKGAIVGLTCRVGRAVSGHIDMVYDLL-HYG--KSILFVGRPGVGKTTVMREIARVLSDEFQ------KRVVIVDT 159 (337)
Q Consensus 89 ~~~~~~g~i~~l~~r~~~~~~~~~~~l~~~v-~~g--~~v~IiGpnGsGKTTLL~~l~gll~~~~~------~~i~~v~~ 159 (337)
.++. +..+++|..+...++.+.+-..+ ..| ..++|+||||||||||+++|+|++++..+ ..+..+++
T Consensus 79 tIR~----~s~~~~r~~~~~~~~~~~~l~~l~~~~~~~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~ 154 (270)
T TIGR02858 79 TIKN----VSSLNIRIAREKLGAADKLLPYLVRNNRVLNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDE 154 (270)
T ss_pred EEEc----ccccEEEeccccCCcHHHHHHHHHhCCCeeEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchh
Confidence 5655 45777777665555554443333 445 58899999999999999999999998732 34444454
Q ss_pred CcccccC-CCCcccccccchhccCCCcchhHHHHHHHHHhhCCcEEEEcCCCCHHHHHHHHHHHhcCCeEEEEEcCcchh
Q 019702 160 SNEIGGD-GDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRSIAERGVMLIGTAHGEWLE 238 (337)
Q Consensus 160 ~~ei~~~-~~~~~~~~~~~~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~~ld~~~l~~~~~~G~tvi~t~H~~~~~ 238 (337)
..+++.. ..+++..++ .+.+++.+..|...+++.+++++|++|++|||++..++..+....++|+++|+|+|+.+..
T Consensus 155 ~~ei~~~~~~~~q~~~~--~r~~v~~~~~k~~~~~~~i~~~~P~villDE~~~~e~~~~l~~~~~~G~~vI~ttH~~~~~ 232 (270)
T TIGR02858 155 RSEIAGCVNGVPQHDVG--IRTDVLDGCPKAEGMMMLIRSMSPDVIVVDEIGREEDVEALLEALHAGVSIIATAHGRDVE 232 (270)
T ss_pred HHHHHHHhccccccccc--ccccccccchHHHHHHHHHHhCCCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEechhHHH
Confidence 4555432 345665554 4677888889988888888989999999999999988887777777899999999998876
Q ss_pred HHhhchHHHHHhcCc
Q 019702 239 NIIKNPILSDLIGGV 253 (337)
Q Consensus 239 ~~~~d~v~~~ll~~G 253 (337)
+...++.+..+++.+
T Consensus 233 ~~~~r~~~~~l~~~~ 247 (270)
T TIGR02858 233 DLYKRPVFKELIENE 247 (270)
T ss_pred HHHhChHHHHHHhcC
Confidence 666666666666553
No 255
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.93 E-value=4.2e-26 Score=203.28 Aligned_cols=147 Identities=20% Similarity=0.187 Sum_probs=109.2
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEE------------------EEc
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVV------------------IVD 158 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~------------------~v~ 158 (337)
+++++++|+.... ++++++.+++|++++|+|+||||||||+++|+|+++|+. +.|. +++
T Consensus 3 i~~l~~~~~~~~~--l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~-G~i~~~g~~~~~~~~~~~~~i~~~~ 79 (201)
T cd03231 3 ADELTCERDGRAL--FSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLA-GRVLLNGGPLDFQRDSIARGLLYLG 79 (201)
T ss_pred EEEEEEEeCCcee--eccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC-cEEEECCEecccccHHhhhheEEec
Confidence 6789999976544 999999999999999999999999999999999998873 3332 222
Q ss_pred CCcccccCCCCccc-----------cccc-----------chhccCCCcchhHHHHHHHHHhhCCcEEEEcCCCCHHHH-
Q 019702 159 TSNEIGGDGDIPHS-----------AIGT-----------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEA- 215 (337)
Q Consensus 159 ~~~ei~~~~~~~~~-----------~~~~-----------~~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~~ld~- 215 (337)
+...+.....+.++ .+.. .+....+|+||+||+++|+|++.+|++||+||||+++|.
T Consensus 80 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~ 159 (201)
T cd03231 80 HAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKA 159 (201)
T ss_pred cccccCCCcCHHHHHHhhcccccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH
Confidence 22111100000000 0000 022345799999999999999999999999999999995
Q ss_pred ------HHHHHHHhcCCeEEEEEcCcchhHHhhchHH
Q 019702 216 ------HACRSIAERGVMLIGTAHGEWLENIIKNPIL 246 (337)
Q Consensus 216 ------~~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~ 246 (337)
+.+.++.++|.|+|++||+.......|++++
T Consensus 160 ~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~~~~~ 196 (201)
T cd03231 160 GVARFAEAMAGHCARGGMVVLTTHQDLGLSEAGAREL 196 (201)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEecCchhhhhccceeE
Confidence 3344555668999999999887777888877
No 256
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.93 E-value=3e-26 Score=255.65 Aligned_cols=168 Identities=17% Similarity=0.136 Sum_probs=132.3
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCe------------------EEEEc
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKR------------------VVIVD 158 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~------------------i~~v~ 158 (337)
+++++++|++....+++++++.+++|++++|+||||||||||+++|+|+++|+. +. +++++
T Consensus 1940 v~nLsK~Y~~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~pts-G~I~i~G~~i~~~~~~~r~~IGy~p 2018 (2272)
T TIGR01257 1940 LNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTS-GDATVAGKSILTNISDVHQNMGYCP 2018 (2272)
T ss_pred EEEEEEEECCCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCc-cEEEECCEECcchHHHHhhhEEEEe
Confidence 779999998532235999999999999999999999999999999999999873 33 34444
Q ss_pred CCcccccC-------------CCCccccc-----------cc----chhccCCCcchhHHHHHHHHHhhCCcEEEEcCCC
Q 019702 159 TSNEIGGD-------------GDIPHSAI-----------GT----ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIG 210 (337)
Q Consensus 159 ~~~ei~~~-------------~~~~~~~~-----------~~----~~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~ 210 (337)
+...+... .+++.... +. .+....+|+|||||+++|+|++.+|++|+|||||
T Consensus 2019 Q~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P~VLLLDEPT 2098 (2272)
T TIGR01257 2019 QFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPT 2098 (2272)
T ss_pred ccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 43221110 01111100 00 1234567999999999999999999999999999
Q ss_pred CHHHH-------HHHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHh
Q 019702 211 TEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (337)
Q Consensus 211 ~~ld~-------~~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~ 267 (337)
+++|. +.+.+++++|.|||+|||++++++.+||+++ +|++|++++.|+++++.+.
T Consensus 2099 sGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e~lcDrV~--IL~~G~i~~~Gs~q~Lk~~ 2160 (2272)
T TIGR01257 2099 TGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLA--IMVKGAFQCLGTIQHLKSK 2160 (2272)
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEE--EEECCEEEEECCHHHHHHH
Confidence 99995 4466666679999999999999999999999 9999999999999998664
No 257
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.93 E-value=4.9e-26 Score=191.41 Aligned_cols=163 Identities=18% Similarity=0.244 Sum_probs=127.3
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEcCCccc-------------
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEI------------- 163 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~~~~ei------------- 163 (337)
++++++.|+.... +.++++..+.|+.+.++||+|+|||||+|.++=+.-|.+ +...+-...-.+
T Consensus 5 v~~in~~yg~~q~--lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~s-g~l~ia~~~fd~s~~~~~k~i~~lr 81 (242)
T COG4161 5 LNGINCFYGAHQA--LFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRS-GTLNIAGNHFDFSKTPSDKAIRDLR 81 (242)
T ss_pred Ecccccccccchh--eeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCC-CeEEecccccccccCccHHHHHHHH
Confidence 5689999998876 999999999999999999999999999999998887763 333222111000
Q ss_pred ---ccC----CCCccccc------------cc------------c----------hhccCCCcchhHHHHHHHHHhhCCc
Q 019702 164 ---GGD----GDIPHSAI------------GT------------A----------RRMQVPEPSLQHKVMIEAVENHMPE 202 (337)
Q Consensus 164 ---~~~----~~~~~~~~------------~~------------~----------~~~~~~S~g~k~r~~ia~al~~~P~ 202 (337)
+.. ..+|+..+ +. . +..--+||||+||++|||||++.|+
T Consensus 82 ~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaiaralmmkpq 161 (242)
T COG4161 82 RNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMMEPQ 161 (242)
T ss_pred HhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHHHHHHhcCCc
Confidence 000 11222110 00 0 1112359999999999999999999
Q ss_pred EEEEcCCCCHHHH-------HHHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHH
Q 019702 203 VIIVDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEAR 264 (337)
Q Consensus 203 vlilDEp~~~ld~-------~~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~ 264 (337)
+|++||||+.+|. +.++++.++|+|=+++||..+.+...+.+++ .|.+|+||..|+.+..
T Consensus 162 vllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~va~k~as~vv--yme~g~ive~g~a~~f 228 (242)
T COG4161 162 VLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVV--YMENGHIVEQGDASCF 228 (242)
T ss_pred EEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhHHHhhhhheE--eeecCeeEeecchhhc
Confidence 9999999999995 4688899999999999999999999999999 9999999999998753
No 258
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.93 E-value=2.8e-26 Score=232.45 Aligned_cols=167 Identities=16% Similarity=0.202 Sum_probs=126.8
Q ss_pred EeeEEEEECCc---------cccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCe--------------
Q 019702 97 IVGLTCRVGRA---------VSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKR-------------- 153 (337)
Q Consensus 97 i~~l~~r~~~~---------~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~-------------- 153 (337)
+++++++|+.. ....++++++.+++|++++|+||||||||||+++|+|+++ + .+.
T Consensus 278 ~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~-~G~i~~~g~~i~~~~~~ 355 (529)
T PRK15134 278 VEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-S-QGEIWFDGQPLHNLNRR 355 (529)
T ss_pred ccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-C-CcEEEECCEEccccchh
Confidence 67899999521 1235899999999999999999999999999999999984 3 222
Q ss_pred --------EEEEcCCcc--cccC-------------C--CCccc----c-------ccc-----chhccCCCcchhHHHH
Q 019702 154 --------VVIVDTSNE--IGGD-------------G--DIPHS----A-------IGT-----ARRMQVPEPSLQHKVM 192 (337)
Q Consensus 154 --------i~~v~~~~e--i~~~-------------~--~~~~~----~-------~~~-----~~~~~~~S~g~k~r~~ 192 (337)
+.++++... +... . ..+.. . ++. .+....+|+||+||++
T Consensus 356 ~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ 435 (529)
T PRK15134 356 QLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQRIA 435 (529)
T ss_pred hHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHHHHHH
Confidence 444444321 1000 0 00000 0 000 1223467999999999
Q ss_pred HHHHHhhCCcEEEEcCCCCHHHH-------HHHHHHHhc-CCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHH
Q 019702 193 IEAVENHMPEVIIVDEIGTEAEA-------HACRSIAER-GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEAR 264 (337)
Q Consensus 193 ia~al~~~P~vlilDEp~~~ld~-------~~l~~~~~~-G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~ 264 (337)
||+|++.+|++||+||||+++|. +.+.+++++ |.|||++||+++++..+||+++ ++++|++++.|+++++
T Consensus 436 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~--~l~~G~i~~~~~~~~~ 513 (529)
T PRK15134 436 IARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVI--VLRQGEVVEQGDCERV 513 (529)
T ss_pred HHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEE--EEECCEEEEEcCHHHH
Confidence 99999999999999999999995 345555554 8999999999999999999999 9999999999999988
Q ss_pred HHh
Q 019702 265 ARR 267 (337)
Q Consensus 265 ~~~ 267 (337)
+..
T Consensus 514 ~~~ 516 (529)
T PRK15134 514 FAA 516 (529)
T ss_pred hcC
Confidence 753
No 259
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.93 E-value=7.8e-26 Score=230.24 Aligned_cols=166 Identities=14% Similarity=0.166 Sum_probs=127.0
Q ss_pred EeeEEEEEC-CccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCC-------CeEEEEcCCcccccC--
Q 019702 97 IVGLTCRVG-RAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ-------KRVVIVDTSNEIGGD-- 166 (337)
Q Consensus 97 i~~l~~r~~-~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~-------~~i~~v~~~~ei~~~-- 166 (337)
+++++++|+ ... .++++++.+++|++++|+|||||||||||++|+|+++|+.| ..+.++++...+...
T Consensus 7 ~~nls~~~~~~~~--il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~~~~t 84 (552)
T TIGR03719 7 MNRVSKVVPPKKE--ILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGIKVGYLPQEPQLDPTKT 84 (552)
T ss_pred EeeEEEecCCCCe--eecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCCCCCCc
Confidence 679999997 443 49999999999999999999999999999999999988743 235666654332110
Q ss_pred ------CCC-------------------cccc---------------------------------cc---cchhccCCCc
Q 019702 167 ------GDI-------------------PHSA---------------------------------IG---TARRMQVPEP 185 (337)
Q Consensus 167 ------~~~-------------------~~~~---------------------------------~~---~~~~~~~~S~ 185 (337)
... +... ++ .......+|+
T Consensus 85 v~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSg 164 (552)
T TIGR03719 85 VRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPPWDADVTKLSG 164 (552)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCcccCchhhcCH
Confidence 000 0000 00 0123446899
Q ss_pred chhHHHHHHHHHhhCCcEEEEcCCCCHHHHHHH---H-HHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEE-EecC
Q 019702 186 SLQHKVMIEAVENHMPEVIIVDEIGTEAEAHAC---R-SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTV-TLGD 260 (337)
Q Consensus 186 g~k~r~~ia~al~~~P~vlilDEp~~~ld~~~l---~-~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv-~~g~ 260 (337)
||+||++||+|++.+|++|||||||+++|.... . .+.+.+.|||++||+.+++..+||+++ ++++|+++ ..|+
T Consensus 165 Gqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~~~tvIiisHd~~~~~~~~d~v~--~l~~g~i~~~~g~ 242 (552)
T TIGR03719 165 GERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEYPGTVVAVTHDRYFLDNVAGWIL--ELDRGRGIPWEGN 242 (552)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcCeEE--EEECCEEEEecCC
Confidence 999999999999999999999999999996432 2 233445799999999999999999999 99999965 6788
Q ss_pred HHHHHH
Q 019702 261 EEARAR 266 (337)
Q Consensus 261 ~~~~~~ 266 (337)
++++.+
T Consensus 243 ~~~~~~ 248 (552)
T TIGR03719 243 YSSWLE 248 (552)
T ss_pred HHHHHH
Confidence 887655
No 260
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.93 E-value=4.2e-26 Score=203.69 Aligned_cols=147 Identities=20% Similarity=0.175 Sum_probs=108.1
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEE------------------Ec
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVI------------------VD 158 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~------------------v~ 158 (337)
+++++++|+... .++++++.+++|++++|+||||||||||+++|+|+++|+. +.|.+ +.
T Consensus 4 ~~~l~~~~~~~~--~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~-G~v~~~g~~~~~~~~~~~~~~~~~~ 80 (204)
T PRK13538 4 ARNLACERDERI--LFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDA-GEVLWQGEPIRRQRDEYHQDLLYLG 80 (204)
T ss_pred EEEEEEEECCEE--EEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCC-cEEEECCEEcccchHHhhhheEEeC
Confidence 678999997654 4999999999999999999999999999999999998873 44432 22
Q ss_pred CCcccccCCCCcc-----------c---ccc-c----------chhccCCCcchhHHHHHHHHHhhCCcEEEEcCCCCHH
Q 019702 159 TSNEIGGDGDIPH-----------S---AIG-T----------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEA 213 (337)
Q Consensus 159 ~~~ei~~~~~~~~-----------~---~~~-~----------~~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~~l 213 (337)
+...+.....+.+ . .+. . .+....+|+||+||+++|+|++.+|+++++||||+++
T Consensus 81 ~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~L 160 (204)
T PRK13538 81 HQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAI 160 (204)
T ss_pred CccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCccC
Confidence 2111100000000 0 000 0 0223457999999999999999999999999999999
Q ss_pred HHH-------HHHHHHhcCCeEEEEEcCcchhHHhhchHH
Q 019702 214 EAH-------ACRSIAERGVMLIGTAHGEWLENIIKNPIL 246 (337)
Q Consensus 214 d~~-------~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~ 246 (337)
|.. .+.+++++|.|+|++||+.+++.....+++
T Consensus 161 D~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~~ 200 (204)
T PRK13538 161 DKQGVARLEALLAQHAEQGGMVILTTHQDLPVASDKVRKL 200 (204)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccCCceEE
Confidence 953 345555668999999999998877665554
No 261
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.93 E-value=6.6e-26 Score=205.02 Aligned_cols=149 Identities=17% Similarity=0.208 Sum_probs=109.7
Q ss_pred EeeEEEEECCc-----cccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEE---------------
Q 019702 97 IVGLTCRVGRA-----VSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVI--------------- 156 (337)
Q Consensus 97 i~~l~~r~~~~-----~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~--------------- 156 (337)
+++++++|+.. ....++++++.+.+|++++|+||||||||||+++|+|+++|+. +.|.+
T Consensus 4 ~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~-G~i~~~~~g~~~~~~~~~~~ 82 (224)
T TIGR02324 4 VEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDS-GRILVRHEGAWVDLAQASPR 82 (224)
T ss_pred EEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC-CeEEEecCCCccchhhcCHH
Confidence 57899999631 1235999999999999999999999999999999999998863 44433
Q ss_pred ------------EcCCcccccC-------------CCCcccc-----------ccc-----chhccCCCcchhHHHHHHH
Q 019702 157 ------------VDTSNEIGGD-------------GDIPHSA-----------IGT-----ARRMQVPEPSLQHKVMIEA 195 (337)
Q Consensus 157 ------------v~~~~ei~~~-------------~~~~~~~-----------~~~-----~~~~~~~S~g~k~r~~ia~ 195 (337)
+++...+... ....... ++. ......+|+||+||++||+
T Consensus 83 ~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~lar 162 (224)
T TIGR02324 83 EVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVNIAR 162 (224)
T ss_pred HHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHHHHH
Confidence 2221111000 0000000 000 0123447999999999999
Q ss_pred HHhhCCcEEEEcCCCCHHHH-------HHHHHHHhcCCeEEEEEcCcchhHHhhchHH
Q 019702 196 VENHMPEVIIVDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPIL 246 (337)
Q Consensus 196 al~~~P~vlilDEp~~~ld~-------~~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~ 246 (337)
|++.+|++|++||||+++|. +.+.++.++|.|+|++||+.+++..+||+++
T Consensus 163 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~~~d~i~ 220 (224)
T TIGR02324 163 GFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRELVADRVM 220 (224)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceeE
Confidence 99999999999999999995 3455555669999999999998888999877
No 262
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.93 E-value=7.4e-26 Score=195.64 Aligned_cols=163 Identities=15% Similarity=0.147 Sum_probs=121.8
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEE--------------EEcCCcc
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVV--------------IVDTSNE 162 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~--------------~v~~~~e 162 (337)
+++++..|......+++++++.+.+|+++.++||+||||||||+.++|+..|.. +.|. ++.++..
T Consensus 6 ~~~~sl~y~g~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~-G~i~l~~r~i~gPgaergvVFQ~~~ 84 (259)
T COG4525 6 VSHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSR-GSIQLNGRRIEGPGAERGVVFQNEA 84 (259)
T ss_pred hhheEEecCCcchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCccc-ceEEECCEeccCCCccceeEeccCc
Confidence 457889998766557999999999999999999999999999999999999873 3332 2222221
Q ss_pred cccC-------------CCCcccc-----------cc----cchhccCCCcchhHHHHHHHHHhhCCcEEEEcCCCCHHH
Q 019702 163 IGGD-------------GDIPHSA-----------IG----TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAE 214 (337)
Q Consensus 163 i~~~-------------~~~~~~~-----------~~----~~~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~~ld 214 (337)
+... .+++... ++ ..+..-.+||||+||+.+||||+.+|++|++|||++.+|
T Consensus 85 LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAlD 164 (259)
T COG4525 85 LLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALD 164 (259)
T ss_pred cchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcceEeecCchhhHH
Confidence 1100 0010000 00 001223469999999999999999999999999999999
Q ss_pred H-------HHHH-HHHhcCCeEEEEEcCcchhHHhhchHHHHHhcC--ceEEEecCHH
Q 019702 215 A-------HACR-SIAERGVMLIGTAHGEWLENIIKNPILSDLIGG--VDTVTLGDEE 262 (337)
Q Consensus 215 ~-------~~l~-~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~--G~iv~~g~~~ 262 (337)
. +.+. -..++|+.++++||+.+++-.++++++ +|+. |++|..-+++
T Consensus 165 a~tRe~mQelLldlw~~tgk~~lliTH~ieEAlflatrLv--vlsp~pgRvv~~~~~d 220 (259)
T COG4525 165 ALTREQMQELLLDLWQETGKQVLLITHDIEEALFLATRLV--VLSPGPGRVVERLPLD 220 (259)
T ss_pred HHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHhhhheeE--EecCCCceeeEecCCC
Confidence 4 2233 345789999999999999999999999 8864 7888876665
No 263
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.93 E-value=7.7e-26 Score=202.32 Aligned_cols=157 Identities=12% Similarity=0.178 Sum_probs=122.5
Q ss_pred cchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEcCCc-ccccCCCCccc----------------
Q 019702 110 GHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSN-EIGGDGDIPHS---------------- 172 (337)
Q Consensus 110 ~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~~~~-ei~~~~~~~~~---------------- 172 (337)
.++++++|.+++|+.++|+|+||||||||||.|+|.++|+. +.+.+-..-. -+....++...
T Consensus 41 ~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~-G~v~v~G~v~~li~lg~Gf~pelTGreNi~l~~~~~G~ 119 (249)
T COG1134 41 WALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTS-GKVKVTGKVAPLIELGAGFDPELTGRENIYLRGLILGL 119 (249)
T ss_pred EEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCC-ceEEEcceEehhhhcccCCCcccchHHHHHHHHHHhCc
Confidence 35899999999999999999999999999999999999994 4443221100 01000000000
Q ss_pred ---c-------------ccc--chhccCCCcchhHHHHHHHHHhhCCcEEEEcCCCCHHHH-------HHHHHHHhcCCe
Q 019702 173 ---A-------------IGT--ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEA-------HACRSIAERGVM 227 (337)
Q Consensus 173 ---~-------------~~~--~~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~~ld~-------~~l~~~~~~G~t 227 (337)
. ++. ...+..+|.||+.|++++.|...+||+||+||..+--|. +.+.++.+++.|
T Consensus 120 ~~~ei~~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~~~~~t 199 (249)
T COG1134 120 TRKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKT 199 (249)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHHHcCCE
Confidence 0 000 134556799999999999999999999999999997774 446666678899
Q ss_pred EEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHhhh
Q 019702 228 LIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARRCQ 269 (337)
Q Consensus 228 vi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~~~ 269 (337)
+|++||+++.+..+||+++ ++++|++...|+++++.....
T Consensus 200 iv~VSHd~~~I~~~Cd~~i--~l~~G~i~~~G~~~~vi~~Y~ 239 (249)
T COG1134 200 IVLVSHDLGAIKQYCDRAI--WLEHGQIRMEGSPEEVIPAYE 239 (249)
T ss_pred EEEEECCHHHHHHhcCeeE--EEeCCEEEEcCCHHHHHHHHH
Confidence 9999999999999999999 999999999999999987543
No 264
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.93 E-value=1.8e-25 Score=209.14 Aligned_cols=164 Identities=10% Similarity=-0.016 Sum_probs=122.4
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCC-----CeEEEEcCCcccccC-----
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ-----KRVVIVDTSNEIGGD----- 166 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~-----~~i~~v~~~~ei~~~----- 166 (337)
+++++++ .. ..++++++.+.+|++++|+||||||||||+++|+|+++|+.+ +.+.|+++...+...
T Consensus 42 i~nls~~--~~--~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g~i~yv~q~~~l~~~tv~en 117 (282)
T cd03291 42 FSNLCLV--GA--PVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGRISFSSQFSWIMPGTIKEN 117 (282)
T ss_pred EEEEEEe--cc--cceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEEEEeCcccccccCHHHH
Confidence 4567764 22 248999999999999999999999999999999999988743 235666665432110
Q ss_pred --C--CCcccc-------ccc---c------------hhccCCCcchhHHHHHHHHHhhCCcEEEEcCCCCHHHHHH---
Q 019702 167 --G--DIPHSA-------IGT---A------------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA--- 217 (337)
Q Consensus 167 --~--~~~~~~-------~~~---~------------~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~~ld~~~--- 217 (337)
. ...... ... . .....+|+||+||+++|++++.+|+++|+|||++++|...
T Consensus 118 l~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~ 197 (282)
T cd03291 118 IIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKE 197 (282)
T ss_pred hhcccccCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHH
Confidence 0 000000 000 0 0124689999999999999999999999999999999532
Q ss_pred HHH-H---HhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHh
Q 019702 218 CRS-I---AERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (337)
Q Consensus 218 l~~-~---~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~ 267 (337)
+.. + ..++.|||++||+.+... .||+++ ++++|+++..|+++++.+.
T Consensus 198 l~~~ll~~~~~~~tIiiisH~~~~~~-~~d~i~--~l~~G~i~~~g~~~~~~~~ 248 (282)
T cd03291 198 IFESCVCKLMANKTRILVTSKMEHLK-KADKIL--ILHEGSSYFYGTFSELQSL 248 (282)
T ss_pred HHHHHHHHhhCCCEEEEEeCChHHHH-hCCEEE--EEECCEEEEECCHHHHHhc
Confidence 211 1 234789999999999874 799999 9999999999999988753
No 265
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.93 E-value=4.4e-26 Score=205.79 Aligned_cols=155 Identities=15% Similarity=0.173 Sum_probs=114.0
Q ss_pred EeeEEEEECCcc--ccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCe---------------------
Q 019702 97 IVGLTCRVGRAV--SGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKR--------------------- 153 (337)
Q Consensus 97 i~~l~~r~~~~~--~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~--------------------- 153 (337)
+++++++|++.. ...++++++.+.+|++++|+||||||||||+++|+|+++|+. +.
T Consensus 4 ~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~-G~i~~~g~~~~~~~~~~~~~~~~ 82 (220)
T TIGR02982 4 IRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQE-GSLKVLGQELYGASEKELVQLRR 82 (220)
T ss_pred EEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC-eEEEECCEEhHhcCHhHHHHHHh
Confidence 568999986421 235999999999999999999999999999999999998763 32
Q ss_pred -EEEEcCCcccccCCCCccc---------c---------ccc-----------chhccCCCcchhHHHHHHHHHhhCCcE
Q 019702 154 -VVIVDTSNEIGGDGDIPHS---------A---------IGT-----------ARRMQVPEPSLQHKVMIEAVENHMPEV 203 (337)
Q Consensus 154 -i~~v~~~~ei~~~~~~~~~---------~---------~~~-----------~~~~~~~S~g~k~r~~ia~al~~~P~v 203 (337)
+.++++...+.....+.++ . +.. ......+|+||+||+++|++++.+|++
T Consensus 83 ~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~~p~i 162 (220)
T TIGR02982 83 NIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHRPKL 162 (220)
T ss_pred heEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 3333333221110000000 0 000 012334699999999999999999999
Q ss_pred EEEcCCCCHHHHH-------HHHHHHh-cCCeEEEEEcCcchhHHhhchHHHHHhcCceE
Q 019702 204 IIVDEIGTEAEAH-------ACRSIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDT 255 (337)
Q Consensus 204 lilDEp~~~ld~~-------~l~~~~~-~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~i 255 (337)
|++|||++++|.. .+.++.+ .|.|+|++||+++.. .+||+++ ++++|++
T Consensus 163 lllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~-~~~d~v~--~l~~g~~ 219 (220)
T TIGR02982 163 VLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRIL-DVADRIV--HMEDGKL 219 (220)
T ss_pred EEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH-hhCCEEE--EEECCEE
Confidence 9999999999953 3555554 489999999999854 6899999 8888875
No 266
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=7.8e-26 Score=193.65 Aligned_cols=147 Identities=23% Similarity=0.324 Sum_probs=111.6
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEcCCcccccCCCC-cccccc
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDI-PHSAIG 175 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~~~~ei~~~~~~-~~~~~~ 175 (337)
+++++++|.... .++++++.+.+|++++|+||||||||||+++|+|++++. .+.+.+ +.. .+...... ....+.
T Consensus 2 ~~~~~~~~~~~~--~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~-~G~i~~-~~~-~~~~~~~~~~~~~i~ 76 (157)
T cd00267 2 IENLSFRYGGRT--ALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPT-SGEILI-DGK-DIAKLPLEELRRRIG 76 (157)
T ss_pred eEEEEEEeCCee--eEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-ccEEEE-CCE-EcccCCHHHHHhceE
Confidence 568899997654 499999999999999999999999999999999999886 455543 221 11100000 000111
Q ss_pred cchhccCCCcchhHHHHHHHHHhhCCcEEEEcCCCCHHHHH-------HHHHHHhcCCeEEEEEcCcchhHHhhchHHHH
Q 019702 176 TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAH-------ACRSIAERGVMLIGTAHGEWLENIIKNPILSD 248 (337)
Q Consensus 176 ~~~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~~ld~~-------~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ 248 (337)
. ...+|+||++|++++++++.+|+++++|||++++|.. .+..+.+.+.|++++||+.++...+||+++
T Consensus 77 ~---~~qlS~G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~-- 151 (157)
T cd00267 77 Y---VPQLSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELAADRVI-- 151 (157)
T ss_pred E---EeeCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEE--
Confidence 1 1118999999999999999999999999999999953 344445557899999999999999999988
Q ss_pred HhcCc
Q 019702 249 LIGGV 253 (337)
Q Consensus 249 ll~~G 253 (337)
.+.+|
T Consensus 152 ~l~~g 156 (157)
T cd00267 152 VLKDG 156 (157)
T ss_pred EEeCc
Confidence 66655
No 267
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.93 E-value=7e-26 Score=231.90 Aligned_cols=167 Identities=15% Similarity=0.162 Sum_probs=126.5
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCC------------------CeEEEEc
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ------------------KRVVIVD 158 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~------------------~~i~~v~ 158 (337)
+++++++|+......++++++.+++|+.++|+||||||||||++.|+|++.|+.| ..+.+++
T Consensus 344 ~~~vsf~y~~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~ 423 (582)
T PRK11176 344 FRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVS 423 (582)
T ss_pred EEEEEEecCCCCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhceEEc
Confidence 7799999976443469999999999999999999999999999999999998732 2344555
Q ss_pred CCcccccC-------CCCcc----ccccc----------c------------hhccCCCcchhHHHHHHHHHhhCCcEEE
Q 019702 159 TSNEIGGD-------GDIPH----SAIGT----------A------------RRMQVPEPSLQHKVMIEAVENHMPEVII 205 (337)
Q Consensus 159 ~~~ei~~~-------~~~~~----~~~~~----------~------------~~~~~~S~g~k~r~~ia~al~~~P~vli 205 (337)
|...+... ...+. ..+.. . ..-..+||||+||++||||+..+|++|+
T Consensus 424 Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~ili 503 (582)
T PRK11176 424 QNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILI 503 (582)
T ss_pred cCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCCEEE
Confidence 44322110 00010 00000 0 1113379999999999999999999999
Q ss_pred EcCCCCHHHHHH-------HHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHh
Q 019702 206 VDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (337)
Q Consensus 206 lDEp~~~ld~~~-------l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~ 267 (337)
+||||+++|.+. +..+ .++.|+|++||+.+.. ..||+++ ++++|++++.|+++++.+.
T Consensus 504 lDEptsaLD~~t~~~i~~~l~~~-~~~~tvI~VtHr~~~~-~~~D~Ii--~l~~g~i~e~g~~~~l~~~ 568 (582)
T PRK11176 504 LDEATSALDTESERAIQAALDEL-QKNRTSLVIAHRLSTI-EKADEIL--VVEDGEIVERGTHAELLAQ 568 (582)
T ss_pred EECccccCCHHHHHHHHHHHHHH-hCCCEEEEEecchHHH-HhCCEEE--EEECCEEEEeCCHHHHHhC
Confidence 999999999532 2222 3478999999999866 4699999 9999999999999998764
No 268
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=1.2e-25 Score=227.89 Aligned_cols=166 Identities=18% Similarity=0.228 Sum_probs=128.1
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCC-------CeEEEEcCCcc--cccC-
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ-------KRVVIVDTSNE--IGGD- 166 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~-------~~i~~v~~~~e--i~~~- 166 (337)
+++++++|++..+ ++++++.+++|++++|+||||||||||+++|+|+++|+.+ .++.++++... +...
T Consensus 322 ~~~l~~~~~~~~~--l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~ 399 (530)
T PRK15064 322 VENLTKGFDNGPL--FKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENANIGYYAQDHAYDFENDL 399 (530)
T ss_pred EEeeEEeeCCcee--ecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEcccccccCCCCC
Confidence 7799999976544 9999999999999999999999999999999999988732 24566665432 1100
Q ss_pred ------CCC--c---ccc-------ccc-----chhccCCCcchhHHHHHHHHHhhCCcEEEEcCCCCHHHHHHH---H-
Q 019702 167 ------GDI--P---HSA-------IGT-----ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHAC---R- 219 (337)
Q Consensus 167 ------~~~--~---~~~-------~~~-----~~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~~ld~~~l---~- 219 (337)
... . ... ++. .+....+|+||+||++||+|++.+|++||+||||+++|.... .
T Consensus 400 t~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~ 479 (530)
T PRK15064 400 TLFDWMSQWRQEGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNM 479 (530)
T ss_pred cHHHHHHHhccCCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHH
Confidence 000 0 000 000 123456799999999999999999999999999999996432 2
Q ss_pred HHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEE-EecCHHHHHH
Q 019702 220 SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTV-TLGDEEARAR 266 (337)
Q Consensus 220 ~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv-~~g~~~~~~~ 266 (337)
.+.+.+.|||++||+.+++..+||+++ ++++|+++ ..|++.+++.
T Consensus 480 ~l~~~~~tvi~vsHd~~~~~~~~d~i~--~l~~g~i~~~~g~~~~~~~ 525 (530)
T PRK15064 480 ALEKYEGTLIFVSHDREFVSSLATRII--EITPDGVVDFSGTYEEYLR 525 (530)
T ss_pred HHHHCCCEEEEEeCCHHHHHHhCCEEE--EEECCeEEEcCCCHHHHHH
Confidence 223335699999999999999999999 99999987 7899888765
No 269
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=8.3e-26 Score=233.32 Aligned_cols=165 Identities=16% Similarity=0.239 Sum_probs=126.1
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCC-------eEEEEcCCc-c-cccC-
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK-------RVVIVDTSN-E-IGGD- 166 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~-------~i~~v~~~~-e-i~~~- 166 (337)
+++++++|+...+ ++++++.+.+|++++|+|||||||||||++|+|+++|+.|. ++.|+++.. . +...
T Consensus 315 ~~~l~~~y~~~~i--l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~igy~~Q~~~~~l~~~~ 392 (638)
T PRK10636 315 MEKVSAGYGDRII--LDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLGYFAQHQLEFLRADE 392 (638)
T ss_pred EEeeEEEeCCeee--eccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCCEEEEEecCcchhhCCccc
Confidence 6789999976544 99999999999999999999999999999999999887431 355666532 1 1100
Q ss_pred ------CCC-ccc---c-------ccc-----chhccCCCcchhHHHHHHHHHhhCCcEEEEcCCCCHHHHHHH---HH-
Q 019702 167 ------GDI-PHS---A-------IGT-----ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHAC---RS- 220 (337)
Q Consensus 167 ------~~~-~~~---~-------~~~-----~~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~~ld~~~l---~~- 220 (337)
... +.. . ++. .+.+..+|||++||++||++++.+|++|||||||+++|.... ..
T Consensus 393 ~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~ 472 (638)
T PRK10636 393 SPLQHLARLAPQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEA 472 (638)
T ss_pred hHHHHHHHhCchhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHH
Confidence 000 000 0 000 123456899999999999999999999999999999996432 22
Q ss_pred HHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEE-EecCHHHHH
Q 019702 221 IAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTV-TLGDEEARA 265 (337)
Q Consensus 221 ~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv-~~g~~~~~~ 265 (337)
+.+.+.|||++|||.+++..+||+++ ++++|+++ +.|++++..
T Consensus 473 L~~~~gtvi~vSHd~~~~~~~~d~i~--~l~~G~i~~~~g~~~~~~ 516 (638)
T PRK10636 473 LIDFEGALVVVSHDRHLLRSTTDDLY--LVHDGKVEPFDGDLEDYQ 516 (638)
T ss_pred HHHcCCeEEEEeCCHHHHHHhCCEEE--EEECCEEEEcCCCHHHHH
Confidence 22334599999999999999999999 99999987 789988864
No 270
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.93 E-value=5.3e-26 Score=205.90 Aligned_cols=154 Identities=19% Similarity=0.193 Sum_probs=112.9
Q ss_pred EeeEEEEECCc-cccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCC------------------CeEEEE
Q 019702 97 IVGLTCRVGRA-VSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ------------------KRVVIV 157 (337)
Q Consensus 97 i~~l~~r~~~~-~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~------------------~~i~~v 157 (337)
+++++++|+.. ....++++++.+.+|++++|+||||||||||+++|+|+++|+.+ ..+.++
T Consensus 14 ~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 93 (226)
T cd03248 14 FQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHSKVSLV 93 (226)
T ss_pred EEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHhhEEEE
Confidence 67899999742 12359999999999999999999999999999999999988732 123444
Q ss_pred cCCcccccC-------CCCc---ccc----------------c--cc----chhccCCCcchhHHHHHHHHHhhCCcEEE
Q 019702 158 DTSNEIGGD-------GDIP---HSA----------------I--GT----ARRMQVPEPSLQHKVMIEAVENHMPEVII 205 (337)
Q Consensus 158 ~~~~ei~~~-------~~~~---~~~----------------~--~~----~~~~~~~S~g~k~r~~ia~al~~~P~vli 205 (337)
++...+... .... ... + +. ......+|+||+||++||++++.+|++||
T Consensus 94 ~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~~p~lll 173 (226)
T cd03248 94 GQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLI 173 (226)
T ss_pred ecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEE
Confidence 433221100 0000 000 0 00 11234579999999999999999999999
Q ss_pred EcCCCCHHHHH-------HHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCce
Q 019702 206 VDEIGTEAEAH-------ACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVD 254 (337)
Q Consensus 206 lDEp~~~ld~~-------~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~ 254 (337)
+||||+++|.. .+.++.+ +.|+|++||+.+++. .||+++ ++++|+
T Consensus 174 lDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~~~-~~d~i~--~l~~g~ 225 (226)
T cd03248 174 LDEATSALDAESEQQVQQALYDWPE-RRTVLVIAHRLSTVE-RADQIL--VLDGGR 225 (226)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHcC-CCEEEEEECCHHHHH-hCCEEE--EecCCc
Confidence 99999999953 3444433 689999999999886 499999 888775
No 271
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=3.6e-26 Score=230.43 Aligned_cols=165 Identities=13% Similarity=0.091 Sum_probs=124.8
Q ss_pred EeeEEEEECC-ccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccc-cCCCe--------------------E
Q 019702 97 IVGLTCRVGR-AVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSD-EFQKR--------------------V 154 (337)
Q Consensus 97 i~~l~~r~~~-~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~-~~~~~--------------------i 154 (337)
+++++++|.. .....++++++.+++|++++|+||||||||||+++|+|+++| + .+. +
T Consensus 262 ~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~-~G~i~~~g~~~~~~~~~~~~~~~i 340 (506)
T PRK13549 262 VRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRW-EGEIFIDGKPVKIRNPQQAIAQGI 340 (506)
T ss_pred EecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCC-CcEEEECCEECCCCCHHHHHHCCC
Confidence 6688888842 112258999999999999999999999999999999999974 4 222 4
Q ss_pred EEEcCCcc---cccC---------C---CC------ccc----c-------ccc-----chhccCCCcchhHHHHHHHHH
Q 019702 155 VIVDTSNE---IGGD---------G---DI------PHS----A-------IGT-----ARRMQVPEPSLQHKVMIEAVE 197 (337)
Q Consensus 155 ~~v~~~~e---i~~~---------~---~~------~~~----~-------~~~-----~~~~~~~S~g~k~r~~ia~al 197 (337)
.++.+... +... . .+ ... . ++. .+....+|+|||||++||+|+
T Consensus 341 ~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~lA~al 420 (506)
T PRK13549 341 AMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKAVLAKCL 420 (506)
T ss_pred EEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHHHHHHHH
Confidence 44444321 1000 0 00 000 0 000 122345799999999999999
Q ss_pred hhCCcEEEEcCCCCHHHH-------HHHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHH
Q 019702 198 NHMPEVIIVDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEAR 264 (337)
Q Consensus 198 ~~~P~vlilDEp~~~ld~-------~~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~ 264 (337)
+.+|++|||||||+++|. +.+..++++|.|||++||+++++..+||+++ ++++|+++..|+++++
T Consensus 421 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~--~l~~G~i~~~~~~~~~ 492 (506)
T PRK13549 421 LLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVL--VMHEGKLKGDLINHNL 492 (506)
T ss_pred hhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEE--EEECCEEEEEeccccC
Confidence 999999999999999995 3455666779999999999999999999999 9999999999988765
No 272
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.93 E-value=6.2e-26 Score=205.55 Aligned_cols=152 Identities=14% Similarity=0.094 Sum_probs=119.1
Q ss_pred hhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccC----------------------CCeEEEEcCCcccccCCCCcc
Q 019702 114 MVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEF----------------------QKRVVIVDTSNEIGGDGDIPH 171 (337)
Q Consensus 114 ~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~----------------------~~~i~~v~~~~ei~~~~~~~~ 171 (337)
.+++.++..++++|.|++|||||||+|+|+|++.|+. .++++|++|...+.....+..
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrg 95 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRG 95 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEec
Confidence 4556666658999999999999999999999999983 235555555443321111111
Q ss_pred c-ccc---------------------cchhccCCCcchhHHHHHHHHHhhCCcEEEEcCCCCHHHH-------HHHHHHH
Q 019702 172 S-AIG---------------------TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEA-------HACRSIA 222 (337)
Q Consensus 172 ~-~~~---------------------~~~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~~ld~-------~~l~~~~ 222 (337)
+ .++ ..+....+|||+||||+|+|||..+|++|++|||.+.+|. ..++.+.
T Consensus 96 NL~YG~~~~~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~EilpylERL~ 175 (352)
T COG4148 96 NLRYGMWKSMRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLR 175 (352)
T ss_pred chhhhhcccchHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHHHHHHHHHH
Confidence 1 000 0145567899999999999999999999999999999993 3466666
Q ss_pred -hcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHh
Q 019702 223 -ERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (337)
Q Consensus 223 -~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~ 267 (337)
+..+.|+++||.++++..+||+++ +|++|++.+.|..++++..
T Consensus 176 ~e~~IPIlYVSHS~~Ev~RLAd~vV--~le~GkV~A~g~~e~v~~~ 219 (352)
T COG4148 176 DEINIPILYVSHSLDEVLRLADRVV--VLENGKVKASGPLEEVWGS 219 (352)
T ss_pred HhcCCCEEEEecCHHHHHhhhheEE--EecCCeEEecCcHHHHhcC
Confidence 448899999999999999999999 9999999999999999875
No 273
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.93 E-value=1.2e-25 Score=228.57 Aligned_cols=167 Identities=14% Similarity=0.190 Sum_probs=126.2
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCC------------------CeEEEEc
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ------------------KRVVIVD 158 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~------------------~~i~~v~ 158 (337)
+++++++|+......++++++.+++|+.++|+||||||||||+++|+|+++|+.+ ..+.+++
T Consensus 319 ~~~v~~~y~~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~ 398 (544)
T TIGR01842 319 VENVTIVPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLP 398 (544)
T ss_pred EEEEEEEcCCCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhheEEec
Confidence 6799999965433459999999999999999999999999999999999988743 1344555
Q ss_pred CCcccccC----------CCCccccccc----------------------chhccCCCcchhHHHHHHHHHhhCCcEEEE
Q 019702 159 TSNEIGGD----------GDIPHSAIGT----------------------ARRMQVPEPSLQHKVMIEAVENHMPEVIIV 206 (337)
Q Consensus 159 ~~~ei~~~----------~~~~~~~~~~----------------------~~~~~~~S~g~k~r~~ia~al~~~P~vlil 206 (337)
+...+... .......+.. ......+|+||+||+++|||+..+|++||+
T Consensus 399 q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~~ilil 478 (544)
T TIGR01842 399 QDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVL 478 (544)
T ss_pred CCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 44322110 0000000000 011234799999999999999999999999
Q ss_pred cCCCCHHHHH-------HHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHH
Q 019702 207 DEIGTEAEAH-------ACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (337)
Q Consensus 207 DEp~~~ld~~-------~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~ 266 (337)
||||+++|.+ .+..+...|.|+|++||+.+.. ..||+++ ++++|+++..|+++++.+
T Consensus 479 DEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~-~~~d~i~--~l~~G~i~~~g~~~~l~~ 542 (544)
T TIGR01842 479 DEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLL-GCVDKIL--VLQDGRIARFGERDEVLA 542 (544)
T ss_pred eCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHH-HhCCEEE--EEECCEEEeeCCHHHHhh
Confidence 9999999953 3334444689999999999865 5799999 999999999999988753
No 274
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.93 E-value=9.3e-26 Score=235.49 Aligned_cols=167 Identities=14% Similarity=0.151 Sum_probs=127.6
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCC------------------CeEEEEc
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ------------------KRVVIVD 158 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~------------------~~i~~v~ 158 (337)
+++++++|+......++++++.+++|+.++|+||||||||||++.|+|++.|+.| ..+.+++
T Consensus 466 ~~~vsf~Y~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~~v~ 545 (694)
T TIGR03375 466 FRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVP 545 (694)
T ss_pred EEEEEEEeCCCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhccEEEC
Confidence 6799999975443469999999999999999999999999999999999998742 2345555
Q ss_pred CCcccccC----------CCCccccccc----------------------chhccCCCcchhHHHHHHHHHhhCCcEEEE
Q 019702 159 TSNEIGGD----------GDIPHSAIGT----------------------ARRMQVPEPSLQHKVMIEAVENHMPEVIIV 206 (337)
Q Consensus 159 ~~~ei~~~----------~~~~~~~~~~----------------------~~~~~~~S~g~k~r~~ia~al~~~P~vlil 206 (337)
|...+... .......+.. ...-..+||||+||++||||+..+|+++|+
T Consensus 546 Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p~iliL 625 (694)
T TIGR03375 546 QDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLL 625 (694)
T ss_pred CChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 54332110 0011110000 011234799999999999999999999999
Q ss_pred cCCCCHHHHHH-------HHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHh
Q 019702 207 DEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (337)
Q Consensus 207 DEp~~~ld~~~-------l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~ 267 (337)
||||+++|.+. +..+ .++.|+|++||..+.. ..||+++ ++++|++++.|+++++...
T Consensus 626 DE~Ts~LD~~te~~i~~~l~~~-~~~~T~iiItHrl~~~-~~~D~ii--vl~~G~i~e~G~~~eLl~~ 689 (694)
T TIGR03375 626 DEPTSAMDNRSEERFKDRLKRW-LAGKTLVLVTHRTSLL-DLVDRII--VMDNGRIVADGPKDQVLEA 689 (694)
T ss_pred eCCCCCCCHHHHHHHHHHHHHH-hCCCEEEEEecCHHHH-HhCCEEE--EEeCCEEEeeCCHHHHHHH
Confidence 99999999532 2222 2479999999999876 5799999 9999999999999998763
No 275
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.93 E-value=1.8e-25 Score=211.20 Aligned_cols=158 Identities=17% Similarity=0.229 Sum_probs=124.5
Q ss_pred cchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEcCCcc---------------ccc----CCCCc
Q 019702 110 GHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNE---------------IGG----DGDIP 170 (337)
Q Consensus 110 ~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~~~~e---------------i~~----~~~~~ 170 (337)
.+++++++.+.+|+.++|+|.+|||||||-++|.+++++. +.|.+..++.. +.| ...-|
T Consensus 301 ~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~--G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsP 378 (534)
T COG4172 301 RAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ--GEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSP 378 (534)
T ss_pred EEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC--ceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCc
Confidence 3589999999999999999999999999999999999875 45544332110 000 00001
Q ss_pred cccccc------------------------------------chhccCCCcchhHHHHHHHHHhhCCcEEEEcCCCCHHH
Q 019702 171 HSAIGT------------------------------------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAE 214 (337)
Q Consensus 171 ~~~~~~------------------------------------~~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~~ld 214 (337)
...++. .+.....||||+||++||||+..+|++++||||||.+|
T Consensus 379 RmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD 458 (534)
T COG4172 379 RMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALD 458 (534)
T ss_pred ccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhh
Confidence 111000 12344569999999999999999999999999999999
Q ss_pred H-------HHHHHHH-hcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHhhhHH
Q 019702 215 A-------HACRSIA-ERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARRCQKS 271 (337)
Q Consensus 215 ~-------~~l~~~~-~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~~~~~ 271 (337)
. ++++.+. +.|.+-+++|||+..+..+|++++ +|.+|++|++|+.+++|.+++..
T Consensus 459 ~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~vi--Vm~~GkiVE~G~~~~if~~P~~~ 521 (534)
T COG4172 459 RSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVI--VMRDGKIVEQGPTEAVFANPQHE 521 (534)
T ss_pred HHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceEE--EEeCCEEeeeCCHHHHhcCCCcH
Confidence 3 5677776 459999999999999999999999 99999999999999999876544
No 276
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.93 E-value=1.7e-25 Score=202.59 Aligned_cols=148 Identities=18% Similarity=0.235 Sum_probs=112.5
Q ss_pred hcccCCCEEEEEcCCCCcHHHHHHHHHccccccCC-------------CeEEEEcCCcccccC--CCC------------
Q 019702 117 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ-------------KRVVIVDTSNEIGGD--GDI------------ 169 (337)
Q Consensus 117 ~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~-------------~~i~~v~~~~ei~~~--~~~------------ 169 (337)
+.+++|++++|+||||||||||+++|+|+++|+.+ .++.++.+...+... ..+
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~ 80 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGHI 80 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhcccccc
Confidence 35789999999999999999999999999988732 235555554322100 000
Q ss_pred -----cc-c---cccc-----------chhccCCCcchhHHHHHHHHHhhCCcEEEEcCCCCHHHH-------HHHHHHH
Q 019702 170 -----PH-S---AIGT-----------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEA-------HACRSIA 222 (337)
Q Consensus 170 -----~~-~---~~~~-----------~~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~~ld~-------~~l~~~~ 222 (337)
+. . .+.. ......+|+||+||+++|+|++.+|++||+||||+++|. +.+.++.
T Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~ 160 (223)
T TIGR03771 81 GWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELA 160 (223)
T ss_pred ccccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 00 0 0000 012345799999999999999999999999999999995 3455556
Q ss_pred hcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHh
Q 019702 223 ERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (337)
Q Consensus 223 ~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~ 267 (337)
++|.|+|++||+.+++..+||+++ ++ +|+++..|+++++...
T Consensus 161 ~~~~tvii~sH~~~~~~~~~d~i~--~l-~G~i~~~~~~~~~~~~ 202 (223)
T TIGR03771 161 GAGTAILMTTHDLAQAMATCDRVV--LL-NGRVIADGTPQQLQDP 202 (223)
T ss_pred HcCCEEEEEeCCHHHHHHhCCEEE--EE-CCEEEeecCHHHhcCh
Confidence 679999999999999989999999 78 6999999999987654
No 277
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.93 E-value=1.6e-25 Score=201.77 Aligned_cols=152 Identities=10% Similarity=0.098 Sum_probs=111.5
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCe-----------------------
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKR----------------------- 153 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~----------------------- 153 (337)
+.+++++|++.. ..++++++.+.+|++++|+|||||||||||++|+|+++|+. +.
T Consensus 3 ~~~~~~~~~~~~-~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~-G~i~~~g~~~~~~~~~~~~~~~~~~ 80 (218)
T cd03290 3 VTNGYFSWGSGL-ATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLE-GKVHWSNKNESEPSFEATRSRNRYS 80 (218)
T ss_pred eeeeEEecCCCC-cceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCC-CeEEECCcccccccccccchhhcce
Confidence 668999997542 35999999999999999999999999999999999998763 32
Q ss_pred EEEEcCCcccccC---------CCCcccc-------ccc---------------chhccCCCcchhHHHHHHHHHhhCCc
Q 019702 154 VVIVDTSNEIGGD---------GDIPHSA-------IGT---------------ARRMQVPEPSLQHKVMIEAVENHMPE 202 (337)
Q Consensus 154 i~~v~~~~ei~~~---------~~~~~~~-------~~~---------------~~~~~~~S~g~k~r~~ia~al~~~P~ 202 (337)
+.++.+...+... ....... ++. ......+|+||+||++||+|++.+|+
T Consensus 81 i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~ 160 (218)
T cd03290 81 VAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTN 160 (218)
T ss_pred EEEEcCCCccccccHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCCC
Confidence 3333332211100 0000000 000 01234689999999999999999999
Q ss_pred EEEEcCCCCHHHHH---------HHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCc
Q 019702 203 VIIVDEIGTEAEAH---------ACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGV 253 (337)
Q Consensus 203 vlilDEp~~~ld~~---------~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G 253 (337)
+||+||||+++|.. .+..+.+.|.|+|++||+.+.+. .||+++ ++++|
T Consensus 161 illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~-~~d~i~--~l~~G 217 (218)
T cd03290 161 IVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLP-HADWII--AMKDG 217 (218)
T ss_pred EEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHh-hCCEEE--EecCC
Confidence 99999999999953 22334456899999999999875 699988 77765
No 278
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.92 E-value=9.3e-26 Score=238.01 Aligned_cols=167 Identities=16% Similarity=0.172 Sum_probs=127.8
Q ss_pred EeeEEEEECCcc-ccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCC------------------CeEEEE
Q 019702 97 IVGLTCRVGRAV-SGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ------------------KRVVIV 157 (337)
Q Consensus 97 i~~l~~r~~~~~-~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~------------------~~i~~v 157 (337)
++|++|+|+... ...++++++.+++|+.++|+||+||||||+++.|.+++.|+.+ .+|++|
T Consensus 353 f~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~iglV 432 (1228)
T KOG0055|consen 353 FRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQIGLV 432 (1228)
T ss_pred EEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhhcCee
Confidence 669999998653 4568999999999999999999999999999999999999832 123333
Q ss_pred cCCcccccCCCCcccc-----------ccc----------------------chhccCCCcchhHHHHHHHHHhhCCcEE
Q 019702 158 DTSNEIGGDGDIPHSA-----------IGT----------------------ARRMQVPEPSLQHKVMIEAVENHMPEVI 204 (337)
Q Consensus 158 ~~~~ei~~~~~~~~~~-----------~~~----------------------~~~~~~~S~g~k~r~~ia~al~~~P~vl 204 (337)
.|.+-+ +...+.++. +.. ..+--.+|||||||+|||||+..+|+||
T Consensus 433 ~QePvl-F~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P~IL 511 (1228)
T KOG0055|consen 433 SQEPVL-FATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPKIL 511 (1228)
T ss_pred eechhh-hcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhCCCEE
Confidence 333211 111111110 000 0111237999999999999999999999
Q ss_pred EEcCCCCHHHHHH------HHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHh
Q 019702 205 IVDEIGTEAEAHA------CRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (337)
Q Consensus 205 ilDEp~~~ld~~~------l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~ 267 (337)
+|||||++||.+. ....+..|.|.|+++|.++.+.. +|.++ ++++|++|+.|+++|+...
T Consensus 512 LLDEaTSaLD~~se~~Vq~ALd~~~~grTTivVaHRLStIrn-aD~I~--v~~~G~IvE~G~h~ELi~~ 577 (1228)
T KOG0055|consen 512 LLDEATSALDAESERVVQEALDKASKGRTTIVVAHRLSTIRN-ADKIA--VMEEGKIVEQGTHDELIAL 577 (1228)
T ss_pred EecCcccccCHHHHHHHHHHHHHhhcCCeEEEEeeehhhhhc-cCEEE--EEECCEEEEecCHHHHHhc
Confidence 9999999999532 22234568999999999998865 99999 9999999999999999875
No 279
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.92 E-value=1.3e-25 Score=200.82 Aligned_cols=159 Identities=18% Similarity=0.168 Sum_probs=121.6
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEcCC-----------ccccc
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTS-----------NEIGG 165 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~~~-----------~ei~~ 165 (337)
+++++++|....+ +++++..|++|+.++|+|||||||||||+.++|...|. .+.+.++..+ ..++.
T Consensus 34 l~~v~v~r~gk~i--L~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~ps-sg~~~~~G~~~G~~~~~~elrk~IG~ 110 (257)
T COG1119 34 LKNVSVRRNGKKI--LGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPS-SGDVTLLGRRFGKGETIFELRKRIGL 110 (257)
T ss_pred ecceEEEECCEee--ccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCC-CCceeeeeeeccCCcchHHHHHHhCc
Confidence 5689999998887 99999999999999999999999999999999999886 3333332110 01111
Q ss_pred C-------------------------CCCcccccc-------------------cchhccCCCcchhHHHHHHHHHhhCC
Q 019702 166 D-------------------------GDIPHSAIG-------------------TARRMQVPEPSLQHKVMIEAVENHMP 201 (337)
Q Consensus 166 ~-------------------------~~~~~~~~~-------------------~~~~~~~~S~g~k~r~~ia~al~~~P 201 (337)
+ .++.+..+. ..+.+..+|-|+++|+.|||||+.+|
T Consensus 111 vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rrvLiaRALv~~P 190 (257)
T COG1119 111 VSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALVKDP 190 (257)
T ss_pred cCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHHHHHHHHHhcCC
Confidence 0 011110000 01345567999999999999999999
Q ss_pred cEEEEcCCCCHHHHH-------HHHHHHhc--CCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecC
Q 019702 202 EVIIVDEIGTEAEAH-------ACRSIAER--GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGD 260 (337)
Q Consensus 202 ~vlilDEp~~~ld~~-------~l~~~~~~--G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~ 260 (337)
++||||||++++|.. .+.+++.. +.++|++||..+++-...++++ ++..|++++.|.
T Consensus 191 ~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~l--ll~~g~v~~~g~ 256 (257)
T COG1119 191 ELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRL--LLKEGEVVAQGK 256 (257)
T ss_pred CEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEE--EeeCCceeeccc
Confidence 999999999999953 34444444 7899999999999988888999 899999988763
No 280
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.92 E-value=2e-25 Score=228.86 Aligned_cols=165 Identities=15% Similarity=0.120 Sum_probs=123.8
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCC------------------CeEEEEc
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ------------------KRVVIVD 158 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~------------------~~i~~v~ 158 (337)
++++++.|.... ..++++++.+++|+.++|+||||||||||++.|+|++ |+.| +++.+++
T Consensus 352 ~~~vsf~~~~~~-~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~v~ 429 (588)
T PRK11174 352 AEDLEILSPDGK-TLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSWVG 429 (588)
T ss_pred EEeeEEeccCCC-eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHHHhheEEec
Confidence 568887664332 3599999999999999999999999999999999999 7632 1355566
Q ss_pred CCcccccC----------CCCccccccc----------------------chhccCCCcchhHHHHHHHHHhhCCcEEEE
Q 019702 159 TSNEIGGD----------GDIPHSAIGT----------------------ARRMQVPEPSLQHKVMIEAVENHMPEVIIV 206 (337)
Q Consensus 159 ~~~ei~~~----------~~~~~~~~~~----------------------~~~~~~~S~g~k~r~~ia~al~~~P~vlil 206 (337)
|.+.+... .......+.. ..+-..+|||||||++||||+..+|++|||
T Consensus 430 Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~IliL 509 (588)
T PRK11174 430 QNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLL 509 (588)
T ss_pred CCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 55433211 0011110000 011224799999999999999999999999
Q ss_pred cCCCCHHHHHH-------HHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHh
Q 019702 207 DEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (337)
Q Consensus 207 DEp~~~ld~~~-------l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~ 267 (337)
||||+++|.+. +.++ .++.|+|++||..+.. ..||+++ ++++|++++.|+.+++...
T Consensus 510 DE~TSaLD~~te~~i~~~l~~~-~~~~TvIiItHrl~~i-~~aD~Ii--vl~~G~i~e~G~~~eL~~~ 573 (588)
T PRK11174 510 DEPTASLDAHSEQLVMQALNAA-SRRQTTLMVTHQLEDL-AQWDQIW--VMQDGQIVQQGDYAELSQA 573 (588)
T ss_pred eCCccCCCHHHHHHHHHHHHHH-hCCCEEEEEecChHHH-HhCCEEE--EEeCCeEeecCCHHHHHhc
Confidence 99999999532 2222 3579999999999866 4699999 9999999999999998764
No 281
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.92 E-value=1.2e-25 Score=226.89 Aligned_cols=159 Identities=17% Similarity=0.142 Sum_probs=119.8
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCC-------------------CeEEEE
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ-------------------KRVVIV 157 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~-------------------~~i~~v 157 (337)
+++++++|. ..++++++.+++|++++|+||||||||||+++|+|+++|+.+ .++.++
T Consensus 268 ~~~l~~~~~----~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v 343 (510)
T PRK09700 268 VRNVTSRDR----KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMAYI 343 (510)
T ss_pred EeCccccCC----CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCCcEEc
Confidence 556776542 248999999999999999999999999999999999987621 124455
Q ss_pred cCCc---ccccC---------C-C-----C-------ccc----c-------ccc-----chhccCCCcchhHHHHHHHH
Q 019702 158 DTSN---EIGGD---------G-D-----I-------PHS----A-------IGT-----ARRMQVPEPSLQHKVMIEAV 196 (337)
Q Consensus 158 ~~~~---ei~~~---------~-~-----~-------~~~----~-------~~~-----~~~~~~~S~g~k~r~~ia~a 196 (337)
++.. .+... . . . ... . ++. .+....+|+||+||++||+|
T Consensus 344 ~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~lAra 423 (510)
T PRK09700 344 TESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVLISKW 423 (510)
T ss_pred cCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHHHHHHHH
Confidence 4431 11000 0 0 0 000 0 000 12234579999999999999
Q ss_pred HhhCCcEEEEcCCCCHHHH-------HHHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCH
Q 019702 197 ENHMPEVIIVDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDE 261 (337)
Q Consensus 197 l~~~P~vlilDEp~~~ld~-------~~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~ 261 (337)
++.+|++||+||||+++|. +.+.+++++|.|||++||+.+++..+||+++ ++++|+++..+++
T Consensus 424 l~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~--~l~~G~i~~~~~~ 493 (510)
T PRK09700 424 LCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIA--VFCEGRLTQILTN 493 (510)
T ss_pred HhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEE--EEECCEEEEEecC
Confidence 9999999999999999994 4455666679999999999999999999999 9999999988766
No 282
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.92 E-value=1.4e-25 Score=220.49 Aligned_cols=160 Identities=19% Similarity=0.206 Sum_probs=126.7
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEE--------------------
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVI-------------------- 156 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~-------------------- 156 (337)
+++++|+|+.... ++++++.+.+|++++|+|.||||||||+++|+|.++|+. +.|.+
T Consensus 11 ~~~i~K~FggV~A--L~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~-G~I~~~G~~~~~~sp~~A~~~GI~~ 87 (500)
T COG1129 11 LRGISKSFGGVKA--LDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDS-GEILIDGKPVAFSSPRDALAAGIAT 87 (500)
T ss_pred eecceEEcCCcee--eccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCC-ceEEECCEEccCCCHHHHHhCCcEE
Confidence 5689999998766 999999999999999999999999999999999999983 33332
Q ss_pred EcCCccccc---------CCCCcccccc-----------------------cchhccCCCcchhHHHHHHHHHhhCCcEE
Q 019702 157 VDTSNEIGG---------DGDIPHSAIG-----------------------TARRMQVPEPSLQHKVMIEAVENHMPEVI 204 (337)
Q Consensus 157 v~~~~ei~~---------~~~~~~~~~~-----------------------~~~~~~~~S~g~k~r~~ia~al~~~P~vl 204 (337)
+.|...+.. .+..|....+ ....+..+|.+++|.++||+|+..++++|
T Consensus 88 V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArAl~~~arll 167 (500)
T COG1129 88 VHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSFDARVL 167 (500)
T ss_pred EeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 222111100 0111111000 01233457999999999999999999999
Q ss_pred EEcCCCCHHH-------HHHHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCH
Q 019702 205 IVDEIGTEAE-------AHACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDE 261 (337)
Q Consensus 205 ilDEp~~~ld-------~~~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~ 261 (337)
||||||+.|+ ++.+++++++|+++|++||.++++..+||++. +|.+|+.|...+.
T Consensus 168 IlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~Drit--VlRDG~~v~~~~~ 229 (500)
T COG1129 168 ILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRIT--VLRDGRVVGTRPT 229 (500)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEE--EEeCCEEeeeccc
Confidence 9999999887 35677888999999999999999999999999 9999999988773
No 283
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.92 E-value=1.2e-25 Score=191.17 Aligned_cols=168 Identities=18% Similarity=0.214 Sum_probs=131.0
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEcCCcc--------------
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNE-------------- 162 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~~~~e-------------- 162 (337)
++++++.|+...- ..+++|.+.+||.++|+|.+||||||||++|++-+.|+ .+.+.|.....+
T Consensus 9 V~~lsk~Yg~~~g--c~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~-~G~v~Y~~r~~~~~dl~~msEaeRR~ 85 (258)
T COG4107 9 VSGLSKLYGPGKG--CRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPD-AGTVTYRMRDGQPRDLYTMSEAERRR 85 (258)
T ss_pred ehhhhhhhCCCcC--ccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCC-CCeEEEEcCCCCchhHhhhchHHHHH
Confidence 5689999987765 78999999999999999999999999999999999998 456666532211
Q ss_pred -----cccCCCCccc----------cccc--------------------c-----------hhccCCCcchhHHHHHHHH
Q 019702 163 -----IGGDGDIPHS----------AIGT--------------------A-----------RRMQVPEPSLQHKVMIEAV 196 (337)
Q Consensus 163 -----i~~~~~~~~~----------~~~~--------------------~-----------~~~~~~S~g~k~r~~ia~a 196 (337)
.++...-|.. .+++ . ......||||+||+.||+.
T Consensus 86 L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGMqQRLQiARn 165 (258)
T COG4107 86 LLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQIARN 165 (258)
T ss_pred HhhhccceeecCccccceeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcccccchHHHHHHHHHHH
Confidence 1111011110 0000 0 1122359999999999999
Q ss_pred HhhCCcEEEEcCCCCHHHH-------HHHHHHH-hcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHhh
Q 019702 197 ENHMPEVIIVDEIGTEAEA-------HACRSIA-ERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARRC 268 (337)
Q Consensus 197 l~~~P~vlilDEp~~~ld~-------~~l~~~~-~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~~ 268 (337)
|...|+++++||||.++|. +.+..+. +-|.+++++|||+..+..++++.+ +|.+|+++..|-.+.++.++
T Consensus 166 LVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~VarLla~rlm--vmk~g~vve~GLTDrvLDDP 243 (258)
T COG4107 166 LVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLM--VMKQGQVVESGLTDRVLDDP 243 (258)
T ss_pred hccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHHHHHhhhcce--eecCCCEeccccccccccCC
Confidence 9999999999999999994 3344454 558999999999999999999999 99999999999998888765
Q ss_pred h
Q 019702 269 Q 269 (337)
Q Consensus 269 ~ 269 (337)
+
T Consensus 244 ~ 244 (258)
T COG4107 244 H 244 (258)
T ss_pred C
Confidence 4
No 284
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.92 E-value=1.5e-25 Score=189.95 Aligned_cols=156 Identities=20% Similarity=0.207 Sum_probs=112.8
Q ss_pred eEEEEECC--ccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccC----------------------CCeE
Q 019702 99 GLTCRVGR--AVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEF----------------------QKRV 154 (337)
Q Consensus 99 ~l~~r~~~--~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~----------------------~~~i 154 (337)
++++..+. .....++.+++.+++|+.++|+||+||||||||-.++|+-.|+. ++++
T Consensus 11 ~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~R~~~v 90 (228)
T COG4181 11 HLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAALRARHV 90 (228)
T ss_pred hhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHhhccce
Confidence 44444433 23345889999999999999999999999999999999998873 2345
Q ss_pred EEEcCCcccccCC------CCcccc------------------ccc----chhccCCCcchhHHHHHHHHHhhCCcEEEE
Q 019702 155 VIVDTSNEIGGDG------DIPHSA------------------IGT----ARRMQVPEPSLQHKVMIEAVENHMPEVIIV 206 (337)
Q Consensus 155 ~~v~~~~ei~~~~------~~~~~~------------------~~~----~~~~~~~S~g~k~r~~ia~al~~~P~vlil 206 (337)
++++++-.+.... .+|-.. ++. ......+|||++||++||||++..|+||+.
T Consensus 91 GfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLfA 170 (228)
T COG4181 91 GFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFA 170 (228)
T ss_pred eEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCCCEEec
Confidence 5555432211100 000000 000 012345799999999999999999999999
Q ss_pred cCCCCHHHH-------HHHHHH-HhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEE
Q 019702 207 DEIGTEAEA-------HACRSI-AERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVT 257 (337)
Q Consensus 207 DEp~~~ld~-------~~l~~~-~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~ 257 (337)
||||.++|. +++..+ ++.|.|.+++|||...+ ..|+|.+ -|..|+++.
T Consensus 171 DEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA-~Rc~R~~--r~~~G~l~~ 226 (228)
T COG4181 171 DEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLA-ARCDRQL--RLRSGRLVE 226 (228)
T ss_pred cCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHH-Hhhhhee--eeecceecc
Confidence 999999994 344444 47799999999999866 5789988 788888864
No 285
>PLN03211 ABC transporter G-25; Provisional
Probab=99.92 E-value=1.9e-25 Score=230.90 Aligned_cols=166 Identities=17% Similarity=0.247 Sum_probs=127.7
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHcccccc-CC---------------CeEEEEcCC
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDE-FQ---------------KRVVIVDTS 160 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~-~~---------------~~i~~v~~~ 160 (337)
+++++++|+...+ ++++++.+++|++++|+|||||||||||++|+|.++|+ .. +++.++.+.
T Consensus 71 ~~~l~~~~~~~~i--L~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~~~~~~i~yv~Q~ 148 (659)
T PLN03211 71 ISDETRQIQERTI--LNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQD 148 (659)
T ss_pred cccccccCCCCee--eeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECchhhccceEEECcc
Confidence 5578888876555 99999999999999999999999999999999998763 11 234555544
Q ss_pred cccccC------------CCCcc----cc-----------cccc---------hhccCCCcchhHHHHHHHHHhhCCcEE
Q 019702 161 NEIGGD------------GDIPH----SA-----------IGTA---------RRMQVPEPSLQHKVMIEAVENHMPEVI 204 (337)
Q Consensus 161 ~ei~~~------------~~~~~----~~-----------~~~~---------~~~~~~S~g~k~r~~ia~al~~~P~vl 204 (337)
..+... ...+. .. ++.. .....+|+||+||++||++|+.+|++|
T Consensus 149 ~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iL 228 (659)
T PLN03211 149 DILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL 228 (659)
T ss_pred cccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEE
Confidence 322110 00010 00 0000 012347999999999999999999999
Q ss_pred EEcCCCCHHHH-------HHHHHHHhcCCeEEEEEcCcc-hhHHhhchHHHHHhcCceEEEecCHHHHHH
Q 019702 205 IVDEIGTEAEA-------HACRSIAERGVMLIGTAHGEW-LENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (337)
Q Consensus 205 ilDEp~~~ld~-------~~l~~~~~~G~tvi~t~H~~~-~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~ 266 (337)
++||||+++|. +.+++++++|.|||+++|+.+ .+..++|+++ ++++|+++..|+++++..
T Consensus 229 lLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~ii--lL~~G~iv~~G~~~~~~~ 296 (659)
T PLN03211 229 ILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVL--VLSEGRCLFFGKGSDAMA 296 (659)
T ss_pred EEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEE--EecCCcEEEECCHHHHHH
Confidence 99999999994 446666667999999999998 4778999999 999999999999998765
No 286
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.92 E-value=3.6e-25 Score=199.18 Aligned_cols=152 Identities=13% Similarity=0.089 Sum_probs=112.6
Q ss_pred hhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEcCC-cccccCC-------------------CCcc
Q 019702 112 IDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTS-NEIGGDG-------------------DIPH 171 (337)
Q Consensus 112 ~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~~~-~ei~~~~-------------------~~~~ 171 (337)
++++++.+++|++++|+||||||||||+++|+|+++|+. +.+..+... ..++... ....
T Consensus 3 l~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~s-G~i~~~~~~~~~~~~~~~l~~~ltv~enl~~~~~~~~~~~ 81 (213)
T PRK15177 3 LDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDE-GDFIGLRGDALPLGANSFILPGLTGEENARMMASLYGLDG 81 (213)
T ss_pred eeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCC-CCEEEecCceeccccccccCCcCcHHHHHHHHHHHcCCCH
Confidence 778999999999999999999999999999999998874 444312211 0010000 0000
Q ss_pred cccc------------cchhccCCCcchhHHHHHHHHHhhCCcEEEEcCCCCHHHHHH---HHH-HH--hcCCeEEEEEc
Q 019702 172 SAIG------------TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA---CRS-IA--ERGVMLIGTAH 233 (337)
Q Consensus 172 ~~~~------------~~~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~~ld~~~---l~~-~~--~~G~tvi~t~H 233 (337)
.... .......+|+||+||+++|+|++.+|+++++|||++++|... +.. +. .++.++|++||
T Consensus 82 ~~~~~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~~~~~~~ii~vsH 161 (213)
T PRK15177 82 DEFSHFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALACQLQQKGLIVLTH 161 (213)
T ss_pred HHHHHHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHhhCCcEEEEEC
Confidence 0000 002334579999999999999999999999999999888532 111 11 13568999999
Q ss_pred CcchhHHhhchHHHHHhcCceEEEecCHHHHHH
Q 019702 234 GEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (337)
Q Consensus 234 ~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~ 266 (337)
+++.+..+||+++ ++++|++++.++.++..+
T Consensus 162 ~~~~~~~~~d~i~--~l~~G~i~~~~~~~~~~~ 192 (213)
T PRK15177 162 NPRLIKEHCHAFG--VLLHGKITMCEDLAQATA 192 (213)
T ss_pred CHHHHHHhcCeeE--EEECCeEEEeCCHHHHHH
Confidence 9999989999999 999999999999988754
No 287
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.92 E-value=2.2e-25 Score=233.10 Aligned_cols=168 Identities=17% Similarity=0.181 Sum_probs=127.5
Q ss_pred EeeEEEEECCc-cccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCC------------------CeEEEE
Q 019702 97 IVGLTCRVGRA-VSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ------------------KRVVIV 157 (337)
Q Consensus 97 i~~l~~r~~~~-~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~------------------~~i~~v 157 (337)
+++++++|+.. ....++++++.+++|+.++|+||||||||||++.|+|++.|+.| .++.++
T Consensus 481 ~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v 560 (711)
T TIGR00958 481 FQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALV 560 (711)
T ss_pred EEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhhceEE
Confidence 67999999743 23459999999999999999999999999999999999998732 234555
Q ss_pred cCCcccccC----------CCCccccccc----------c------------hhccCCCcchhHHHHHHHHHhhCCcEEE
Q 019702 158 DTSNEIGGD----------GDIPHSAIGT----------A------------RRMQVPEPSLQHKVMIEAVENHMPEVII 205 (337)
Q Consensus 158 ~~~~ei~~~----------~~~~~~~~~~----------~------------~~~~~~S~g~k~r~~ia~al~~~P~vli 205 (337)
+|.+.+... .......+.. . ..-..+|||||||++||||+..+|+++|
T Consensus 561 ~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~~p~ILI 640 (711)
T TIGR00958 561 GQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLI 640 (711)
T ss_pred ecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhcCCCEEE
Confidence 554432210 0011111000 0 1123479999999999999999999999
Q ss_pred EcCCCCHHHHHH---HHHHH-hcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHh
Q 019702 206 VDEIGTEAEAHA---CRSIA-ERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (337)
Q Consensus 206 lDEp~~~ld~~~---l~~~~-~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~ 267 (337)
+||||+++|.+. +.+.. ..+.|+|++||..+.. ..||+++ ++++|++++.|+++++.+.
T Consensus 641 LDEpTSaLD~~te~~i~~~~~~~~~TvIiItHrl~~i-~~aD~Ii--vL~~G~ive~Gt~~eL~~~ 703 (711)
T TIGR00958 641 LDEATSALDAECEQLLQESRSRASRTVLLIAHRLSTV-ERADQIL--VLKKGSVVEMGTHKQLMED 703 (711)
T ss_pred EEccccccCHHHHHHHHHhhccCCCeEEEEeccHHHH-HhCCEEE--EEECCEEEEeeCHHHHHhC
Confidence 999999999643 33222 3578999999999876 4699999 9999999999999998764
No 288
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.92 E-value=2.8e-25 Score=228.00 Aligned_cols=166 Identities=15% Similarity=0.137 Sum_probs=126.1
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCC------------------CeEEEEc
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ------------------KRVVIVD 158 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~------------------~~i~~v~ 158 (337)
+++++++|++.. ..++++++.+++|+.++|+|+||||||||++.|+|++.|+.| .++.+++
T Consensus 343 ~~~v~f~y~~~~-~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~v~ 421 (592)
T PRK10790 343 IDNVSFAYRDDN-LVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQ 421 (592)
T ss_pred EEEEEEEeCCCC-ceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEEEc
Confidence 668999997532 359999999999999999999999999999999999999732 2345555
Q ss_pred CCcccccC---------CCCccccccc----------c------------hhccCCCcchhHHHHHHHHHhhCCcEEEEc
Q 019702 159 TSNEIGGD---------GDIPHSAIGT----------A------------RRMQVPEPSLQHKVMIEAVENHMPEVIIVD 207 (337)
Q Consensus 159 ~~~ei~~~---------~~~~~~~~~~----------~------------~~~~~~S~g~k~r~~ia~al~~~P~vlilD 207 (337)
|...+... .......+.. . ..-..+||||+||++||||+..+|++|++|
T Consensus 422 Q~~~lF~~Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~illlD 501 (592)
T PRK10790 422 QDPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILD 501 (592)
T ss_pred cCCccccchHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEe
Confidence 54433210 0000010000 0 112347999999999999999999999999
Q ss_pred CCCCHHHHHH-------HHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHh
Q 019702 208 EIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (337)
Q Consensus 208 Ep~~~ld~~~-------l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~ 267 (337)
|||+++|.+. +..+ ..++|+|++||+.+... .||+++ ++++|++++.|+++++.+.
T Consensus 502 Epts~LD~~t~~~i~~~l~~~-~~~~tvIivtHr~~~l~-~~D~ii--~l~~G~i~~~G~~~~L~~~ 564 (592)
T PRK10790 502 EATANIDSGTEQAIQQALAAV-REHTTLVVIAHRLSTIV-EADTIL--VLHRGQAVEQGTHQQLLAA 564 (592)
T ss_pred CCcccCCHHHHHHHHHHHHHH-hCCCEEEEEecchHHHH-hCCEEE--EEECCEEEEEcCHHHHHhC
Confidence 9999999533 2222 24689999999998664 699999 9999999999999998753
No 289
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=1.9e-25 Score=220.38 Aligned_cols=164 Identities=16% Similarity=0.177 Sum_probs=126.6
Q ss_pred eeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCC------------------CeEEEEcC
Q 019702 98 VGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ------------------KRVVIVDT 159 (337)
Q Consensus 98 ~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~------------------~~i~~v~~ 159 (337)
++++++|+... ..+.++++.+++|+.++|+|+||||||||++.|+|+.+|+.+ +++.++++
T Consensus 324 ~~l~~~y~~g~-~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q 402 (559)
T COG4988 324 ENLSFRYPDGK-PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQ 402 (559)
T ss_pred cceEEecCCCC-cccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCC
Confidence 38999998775 469999999999999999999999999999999999998722 33445555
Q ss_pred CcccccCCCCcccc-----------c-----------------ccc----hhccCCCcchhHHHHHHHHHhhCCcEEEEc
Q 019702 160 SNEIGGDGDIPHSA-----------I-----------------GTA----RRMQVPEPSLQHKVMIEAVENHMPEVIIVD 207 (337)
Q Consensus 160 ~~ei~~~~~~~~~~-----------~-----------------~~~----~~~~~~S~g~k~r~~ia~al~~~P~vlilD 207 (337)
++.+.. +.+.++. + +.. ..-.-+|+||.||+++|||+.++++++++|
T Consensus 403 ~p~lf~-gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llD 481 (559)
T COG4988 403 NPYLFA-GTIRENILLARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLD 481 (559)
T ss_pred CCcccc-ccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEec
Confidence 443321 1111110 0 000 111236999999999999999999999999
Q ss_pred CCCCHHHHH-------HHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHh
Q 019702 208 EIGTEAEAH-------ACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (337)
Q Consensus 208 Ep~~~ld~~-------~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~ 267 (337)
|||+++|.+ .+.++. ++.|+|++||.+..+ .-+|+++ +|++|++++.|+++++..+
T Consensus 482 EpTA~LD~etE~~i~~~l~~l~-~~ktvl~itHrl~~~-~~~D~I~--vld~G~l~~~g~~~~L~~~ 544 (559)
T COG4988 482 EPTAHLDAETEQIILQALQELA-KQKTVLVITHRLEDA-ADADRIV--VLDNGRLVEQGTHEELSEK 544 (559)
T ss_pred CCccCCCHhHHHHHHHHHHHHH-hCCeEEEEEcChHHH-hcCCEEE--EecCCceeccCCHHHHhhc
Confidence 999999964 334443 459999999999865 6799999 9999999999999998764
No 290
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=2.6e-25 Score=223.46 Aligned_cols=168 Identities=16% Similarity=0.194 Sum_probs=128.9
Q ss_pred EeeEEEEECCc-cccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCC------------------CeEEEE
Q 019702 97 IVGLTCRVGRA-VSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ------------------KRVVIV 157 (337)
Q Consensus 97 i~~l~~r~~~~-~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~------------------~~i~~v 157 (337)
++|++|.|+.. ....++++++.+++|+.++++||+||||||+.+.|.+++.|+.+ ++|+++
T Consensus 468 F~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~Ig~V 547 (716)
T KOG0058|consen 468 FEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRKIGLV 547 (716)
T ss_pred EEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHHeeee
Confidence 66999999754 34579999999999999999999999999999999999999842 344555
Q ss_pred cCCcccccCCCCcccc-----------cccc----------------------hhccCCCcchhHHHHHHHHHhhCCcEE
Q 019702 158 DTSNEIGGDGDIPHSA-----------IGTA----------------------RRMQVPEPSLQHKVMIEAVENHMPEVI 204 (337)
Q Consensus 158 ~~~~ei~~~~~~~~~~-----------~~~~----------------------~~~~~~S~g~k~r~~ia~al~~~P~vl 204 (337)
.|.+-+.. +.+.++. +..+ .+--.+|||||||+||||||..+|.||
T Consensus 548 ~QEPvLFs-~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~VL 626 (716)
T KOG0058|consen 548 GQEPVLFS-GSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVL 626 (716)
T ss_pred eccceeec-ccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcCCCEE
Confidence 44433211 1111110 0000 111246999999999999999999999
Q ss_pred EEcCCCCHHHHH---HHHHHH---hcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHhh
Q 019702 205 IVDEIGTEAEAH---ACRSIA---ERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARRC 268 (337)
Q Consensus 205 ilDEp~~~ld~~---~l~~~~---~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~~ 268 (337)
||||.||.+|.+ .++++. -++.|||++.|-++.+ .-+|+++ ++++|++++.|+.++++..+
T Consensus 627 ILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLSTV-~~Ad~Iv--vi~~G~V~E~G~h~eLl~~~ 693 (716)
T KOG0058|consen 627 ILDEATSALDAESEYLVQEALDRLMQGRTVLVIAHRLSTV-RHADQIV--VIDKGRVVEMGTHDELLSKP 693 (716)
T ss_pred EEechhhhcchhhHHHHHHHHHHhhcCCeEEEEehhhhHh-hhccEEE--EEcCCeEEecccHHHHhhCc
Confidence 999999999953 233322 2469999999999977 5789999 99999999999999998753
No 291
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.92 E-value=2.6e-25 Score=204.38 Aligned_cols=148 Identities=16% Similarity=0.200 Sum_probs=107.3
Q ss_pred hhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCC------CeEEEEcCCcccccCCCCcc------------cc----
Q 019702 116 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ------KRVVIVDTSNEIGGDGDIPH------------SA---- 173 (337)
Q Consensus 116 ~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~------~~i~~v~~~~ei~~~~~~~~------------~~---- 173 (337)
...+.+|++++|+||||||||||+++|+|+++|+.+ ..+.++++.........+.+ ..
T Consensus 19 ~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~ 98 (246)
T cd03237 19 GGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLSSITKDFYTHPYFKTE 98 (246)
T ss_pred cCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCceEEEecccccCCCCCCHHHHHHHHhhhccccHHHHHH
Confidence 344668999999999999999999999999988743 24556655432211100000 00
Q ss_pred ----ccc----chhccCCCcchhHHHHHHHHHhhCCcEEEEcCCCCHHHH-------HHHHHHHh-cCCeEEEEEcCcch
Q 019702 174 ----IGT----ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEA-------HACRSIAE-RGVMLIGTAHGEWL 237 (337)
Q Consensus 174 ----~~~----~~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~~ld~-------~~l~~~~~-~G~tvi~t~H~~~~ 237 (337)
++. .+....+|+||+||++||+||+.+|+++++||||+++|. +.+.++++ .|.|||++||+.++
T Consensus 99 ~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~ 178 (246)
T cd03237 99 IAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIM 178 (246)
T ss_pred HHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 000 123445799999999999999999999999999999995 34555554 48999999999999
Q ss_pred hHHhhchHHHHHhcCceEE--EecCHHHHH
Q 019702 238 ENIIKNPILSDLIGGVDTV--TLGDEEARA 265 (337)
Q Consensus 238 ~~~~~d~v~~~ll~~G~iv--~~g~~~~~~ 265 (337)
+..+||+++ +++++..+ ..+.|....
T Consensus 179 ~~~~~d~i~--~l~~~~~~~~~~~~~~~~~ 206 (246)
T cd03237 179 IDYLADRLI--VFEGEPSVNGVANPPQSLR 206 (246)
T ss_pred HHHhCCEEE--EEcCCCeeEEEeCCchHHH
Confidence 999999999 88764333 456666644
No 292
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.92 E-value=2.7e-25 Score=227.27 Aligned_cols=167 Identities=11% Similarity=0.121 Sum_probs=127.0
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCC------------------CeEEEEc
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ------------------KRVVIVD 158 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~------------------~~i~~v~ 158 (337)
+++++++|+......++++++.+++|+.++|+||||||||||++.|+|++.|+.| ..+.+++
T Consensus 341 ~~~v~f~y~~~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~ 420 (574)
T PRK11160 341 LNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVS 420 (574)
T ss_pred EEEEEEECCCCCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhheeEEc
Confidence 6799999975433359999999999999999999999999999999999998732 1344555
Q ss_pred CCcccccC----------CCCccccccc----------c-----------hhccCCCcchhHHHHHHHHHhhCCcEEEEc
Q 019702 159 TSNEIGGD----------GDIPHSAIGT----------A-----------RRMQVPEPSLQHKVMIEAVENHMPEVIIVD 207 (337)
Q Consensus 159 ~~~ei~~~----------~~~~~~~~~~----------~-----------~~~~~~S~g~k~r~~ia~al~~~P~vlilD 207 (337)
+...+... .......+.. . .....+|+||+||++||||+..+|++|++|
T Consensus 421 Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~~~~ililD 500 (574)
T PRK11160 421 QRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLD 500 (574)
T ss_pred ccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 54332110 0000000000 0 122347999999999999999999999999
Q ss_pred CCCCHHHHHH-------HHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHh
Q 019702 208 EIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (337)
Q Consensus 208 Ep~~~ld~~~-------l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~ 267 (337)
|||+++|.+. +..+ .++.|+|+++|..+... .||+++ ++++|++++.|+.+++.+.
T Consensus 501 E~ts~lD~~t~~~i~~~l~~~-~~~~tviiitHr~~~~~-~~d~i~--~l~~G~i~~~g~~~~l~~~ 563 (574)
T PRK11160 501 EPTEGLDAETERQILELLAEH-AQNKTVLMITHRLTGLE-QFDRIC--VMDNGQIIEQGTHQELLAQ 563 (574)
T ss_pred CCcccCCHHHHHHHHHHHHHH-cCCCEEEEEecChhHHH-hCCEEE--EEeCCeEEEeCCHHHHHhc
Confidence 9999999532 3332 34799999999999775 599999 9999999999999998764
No 293
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.92 E-value=3.8e-25 Score=196.94 Aligned_cols=144 Identities=16% Similarity=0.161 Sum_probs=105.1
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEE------------------EEc
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVV------------------IVD 158 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~------------------~v~ 158 (337)
+++++++|+... .++++++.+++|++++|+||||||||||+++|+|+++|+. +.+. +++
T Consensus 4 ~~~l~~~~~~~~--il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~-G~v~~~g~~~~~~~~~~~~~i~~~~ 80 (200)
T PRK13540 4 VIELDFDYHDQP--LLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEK-GEILFERQSIKKDLCTYQKQLCFVG 80 (200)
T ss_pred EEEEEEEeCCee--EEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCC-eeEEECCCccccCHHHHHhheEEec
Confidence 678999997654 4999999999999999999999999999999999998873 3333 222
Q ss_pred CCcccccCCCCccc------------ccc---------c--chhccCCCcchhHHHHHHHHHhhCCcEEEEcCCCCHHHH
Q 019702 159 TSNEIGGDGDIPHS------------AIG---------T--ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEA 215 (337)
Q Consensus 159 ~~~ei~~~~~~~~~------------~~~---------~--~~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~~ld~ 215 (337)
+...+.....+.++ .+. . .+....+|+|++||+++|+|++.+|++||+|||++++|.
T Consensus 81 q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~lilDEP~~~LD~ 160 (200)
T PRK13540 81 HRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDE 160 (200)
T ss_pred cccccCcCCCHHHHHHHHHhcCcchHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCH
Confidence 21111000000000 000 0 012235799999999999999999999999999999995
Q ss_pred -------HHHHHHHhcCCeEEEEEcCcchhHHhhch
Q 019702 216 -------HACRSIAERGVMLIGTAHGEWLENIIKNP 244 (337)
Q Consensus 216 -------~~l~~~~~~G~tvi~t~H~~~~~~~~~d~ 244 (337)
+.+.++++.|.|+|++||+.+..+. ||.
T Consensus 161 ~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~-~d~ 195 (200)
T PRK13540 161 LSLLTIITKIQEHRAKGGAVLLTSHQDLPLNK-ADY 195 (200)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEEeCCchhccc-cch
Confidence 3455555678999999999987754 543
No 294
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.92 E-value=2.4e-25 Score=248.48 Aligned_cols=167 Identities=14% Similarity=0.115 Sum_probs=128.7
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCe------------------EEEEc
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKR------------------VVIVD 158 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~------------------i~~v~ 158 (337)
+++++++|++....+++++++.+.+|++++|+||||||||||+++|+|+++|+. +. ++++.
T Consensus 931 I~nLsK~y~~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~Pts-G~I~i~G~dI~~~~~~~r~~IG~~p 1009 (2272)
T TIGR01257 931 VKNLVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTS-GTVLVGGKDIETNLDAVRQSLGMCP 1009 (2272)
T ss_pred EEeEEEEecCCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCc-eEEEECCEECcchHHHHhhcEEEEe
Confidence 779999995322235999999999999999999999999999999999999873 33 33343
Q ss_pred CCcccccC-------------CCCcccc----c-------cc----chhccCCCcchhHHHHHHHHHhhCCcEEEEcCCC
Q 019702 159 TSNEIGGD-------------GDIPHSA----I-------GT----ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIG 210 (337)
Q Consensus 159 ~~~ei~~~-------------~~~~~~~----~-------~~----~~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~ 210 (337)
+...+... .+.+... + +. .+....+|+|||||+++|+|++.+|++|+|||||
T Consensus 1010 Q~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~PkVLLLDEPT 1089 (2272)
T TIGR01257 1010 QHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPT 1089 (2272)
T ss_pred cCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCC
Confidence 33211100 0011000 0 00 1234457999999999999999999999999999
Q ss_pred CHHHH-------HHHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHh
Q 019702 211 TEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (337)
Q Consensus 211 ~~ld~-------~~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~ 267 (337)
+++|. +.+.++ ++|.|||+|||++++++.+||+++ +|++|+++..|++..+.+.
T Consensus 1090 SGLDp~sr~~l~~lL~~l-~~g~TIIltTHdmdea~~laDrI~--iL~~GkL~~~Gs~~~Lk~~ 1150 (2272)
T TIGR01257 1090 SGVDPYSRRSIWDLLLKY-RSGRTIIMSTHHMDEADLLGDRIA--IISQGRLYCSGTPLFLKNC 1150 (2272)
T ss_pred cCCCHHHHHHHHHHHHHH-hCCCEEEEEECCHHHHHHhCCEEE--EEECCEEEEecCHHHHHHh
Confidence 99995 345555 358999999999999999999999 9999999999999988653
No 295
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=3.4e-25 Score=228.74 Aligned_cols=164 Identities=17% Similarity=0.165 Sum_probs=123.6
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeE--------EEEcCCc-c-----
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRV--------VIVDTSN-E----- 162 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i--------~~v~~~~-e----- 162 (337)
++|++++|+.... ++++++.+.+|++++|+|||||||||||++|+|++.|+. +.| .++++.. .
T Consensus 4 i~nls~~~g~~~~--l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~-G~I~~~~~~~i~~~~q~~~~~~~~~ 80 (638)
T PRK10636 4 FSSLQIRRGVRVL--LDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADG-GSYTFPGNWQLAWVNQETPALPQPA 80 (638)
T ss_pred EEEEEEEeCCcee--ecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC-ceEEecCCCEEEEEecCCCCCCCCH
Confidence 6799999987655 999999999999999999999999999999999998873 333 3343311 1
Q ss_pred cccCCC-----------------------C----------ccc----c-------ccc-----chhccCCCcchhHHHHH
Q 019702 163 IGGDGD-----------------------I----------PHS----A-------IGT-----ARRMQVPEPSLQHKVMI 193 (337)
Q Consensus 163 i~~~~~-----------------------~----------~~~----~-------~~~-----~~~~~~~S~g~k~r~~i 193 (337)
+.+... + ... . ++. .+.+..+|+||+||++|
T Consensus 81 ~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSgGerqRv~L 160 (638)
T PRK10636 81 LEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRLNL 160 (638)
T ss_pred HHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhhcCHHHHHHHHH
Confidence 000000 0 000 0 000 12234579999999999
Q ss_pred HHHHhhCCcEEEEcCCCCHHHHHHHH---HH-HhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEE-EecCHHHHH
Q 019702 194 EAVENHMPEVIIVDEIGTEAEAHACR---SI-AERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTV-TLGDEEARA 265 (337)
Q Consensus 194 a~al~~~P~vlilDEp~~~ld~~~l~---~~-~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv-~~g~~~~~~ 265 (337)
|++|+.+|++|||||||+++|..... .+ .+.+.|||++||+.+++..+|++++ ++++|+++ +.|+.+...
T Consensus 161 A~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~~~tviivsHd~~~l~~~~d~i~--~L~~G~i~~~~g~~~~~~ 235 (638)
T PRK10636 161 AQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSYQGTLILISHDRDFLDPIVDKII--HIEQQSLFEYTGNYSSFE 235 (638)
T ss_pred HHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHhcCEEE--EEeCCEEEEecCCHHHHH
Confidence 99999999999999999999975433 32 3447799999999999999999999 99999986 457766554
No 296
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.92 E-value=1.6e-25 Score=225.38 Aligned_cols=163 Identities=17% Similarity=0.130 Sum_probs=121.2
Q ss_pred EeeEEEEECCc-cccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccc-cCCCe--------------------E
Q 019702 97 IVGLTCRVGRA-VSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSD-EFQKR--------------------V 154 (337)
Q Consensus 97 i~~l~~r~~~~-~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~-~~~~~--------------------i 154 (337)
+++++++|+.. ....++++++.+.+|++++|+|||||||||||++|+|+++| + .+. +
T Consensus 260 ~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~-~G~i~~~g~~~~~~~~~~~~~~~i 338 (500)
T TIGR02633 260 ARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKF-EGNVFINGKPVDIRNPAQAIRAGI 338 (500)
T ss_pred EeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCC-CeEEEECCEECCCCCHHHHHhCCC
Confidence 56788877311 11248999999999999999999999999999999999985 3 222 3
Q ss_pred EEEcCCcc---ccc---------CCC---C------ccc----cc-------cc-----chhccCCCcchhHHHHHHHHH
Q 019702 155 VIVDTSNE---IGG---------DGD---I------PHS----AI-------GT-----ARRMQVPEPSLQHKVMIEAVE 197 (337)
Q Consensus 155 ~~v~~~~e---i~~---------~~~---~------~~~----~~-------~~-----~~~~~~~S~g~k~r~~ia~al 197 (337)
.++.+... +.. ... . ... .+ +. .+....+|+||+||++||+|+
T Consensus 339 ~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la~al 418 (500)
T TIGR02633 339 AMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLAKML 418 (500)
T ss_pred EEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHHHHHHH
Confidence 44443321 100 000 0 000 00 00 122346799999999999999
Q ss_pred hhCCcEEEEcCCCCHHHH-------HHHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHH
Q 019702 198 NHMPEVIIVDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEE 262 (337)
Q Consensus 198 ~~~P~vlilDEp~~~ld~-------~~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~ 262 (337)
+.+|++|||||||+++|. +.+..++++|.|||++||+++++..+||+++ ++.+|+++...+.+
T Consensus 419 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~v~--~l~~G~i~~~~~~~ 488 (500)
T TIGR02633 419 LTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVL--VIGEGKLKGDFVNH 488 (500)
T ss_pred hhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEE--EEECCEEEEEEccc
Confidence 999999999999999995 3455666779999999999999999999999 99999998877554
No 297
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.92 E-value=4.5e-25 Score=208.49 Aligned_cols=174 Identities=16% Similarity=0.189 Sum_probs=132.1
Q ss_pred EeeEEEEEC--CccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHcccccc-------------------------
Q 019702 97 IVGLTCRVG--RAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDE------------------------- 149 (337)
Q Consensus 97 i~~l~~r~~--~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~------------------------- 149 (337)
++|+++.|. .....++++++|.+.+||.++|+|.+|||||-+.+.++++++..
T Consensus 9 v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~~lr 88 (534)
T COG4172 9 IRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQLR 88 (534)
T ss_pred eeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHHHHh
Confidence 556777664 44456799999999999999999999999999999999999753
Q ss_pred --CCCeEEEEcCCcccccC----------------C------------------CCcccccccchhccCCCcchhHHHHH
Q 019702 150 --FQKRVVIVDTSNEIGGD----------------G------------------DIPHSAIGTARRMQVPEPSLQHKVMI 193 (337)
Q Consensus 150 --~~~~i~~v~~~~ei~~~----------------~------------------~~~~~~~~~~~~~~~~S~g~k~r~~i 193 (337)
.+.+|..+++.+-.... . ++++...........+||||+||++|
T Consensus 89 ~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqRQRVMI 168 (534)
T COG4172 89 GVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQRVMI 168 (534)
T ss_pred hhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcchhhHHHH
Confidence 12234434332211000 0 00000000012234579999999999
Q ss_pred HHHHhhCCcEEEEcCCCCHHHH-------HHHHHHH-hcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHH
Q 019702 194 EAVENHMPEVIIVDEIGTEAEA-------HACRSIA-ERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARA 265 (337)
Q Consensus 194 a~al~~~P~vlilDEp~~~ld~-------~~l~~~~-~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~ 265 (337)
|.||+.+|++||.||||+.+|+ ++++.+. +.|..++++|||+..+..++|+|+ +|.+|++|+.|+.+.+|
T Consensus 169 AMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~--VM~~G~ivE~~~t~~lF 246 (534)
T COG4172 169 AMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVY--VMQHGEIVETGTTETLF 246 (534)
T ss_pred HHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEE--EEeccEEeecCcHHHHh
Confidence 9999999999999999999994 4566676 459999999999999999999999 99999999999999999
Q ss_pred HhhhHHH
Q 019702 266 RRCQKSI 272 (337)
Q Consensus 266 ~~~~~~~ 272 (337)
..++...
T Consensus 247 ~~PqHpY 253 (534)
T COG4172 247 AAPQHPY 253 (534)
T ss_pred hCCCChH
Confidence 8765443
No 298
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.92 E-value=3.7e-25 Score=226.12 Aligned_cols=167 Identities=17% Similarity=0.169 Sum_probs=125.5
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCC------------------CeEEEEc
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ------------------KRVVIVD 158 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~------------------~~i~~v~ 158 (337)
+++++++|.......++++++.+++|+.++|+||||||||||++.|+|+++|+.+ ..+.+++
T Consensus 316 ~~~v~~~y~~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~ 395 (569)
T PRK10789 316 VNIRQFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVS 395 (569)
T ss_pred EEEEEEECCCCCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEc
Confidence 6789999975433459999999999999999999999999999999999998732 1234444
Q ss_pred CCcccccC----------CCCccccccc----------c------------hhccCCCcchhHHHHHHHHHhhCCcEEEE
Q 019702 159 TSNEIGGD----------GDIPHSAIGT----------A------------RRMQVPEPSLQHKVMIEAVENHMPEVIIV 206 (337)
Q Consensus 159 ~~~ei~~~----------~~~~~~~~~~----------~------------~~~~~~S~g~k~r~~ia~al~~~P~vlil 206 (337)
+...+... .......+.. . .....+|+||+||+++|||+..+|+++++
T Consensus 396 q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illl 475 (569)
T PRK10789 396 QTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILIL 475 (569)
T ss_pred cCCeeccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 43322110 0000000000 0 11234799999999999999999999999
Q ss_pred cCCCCHHHHHH-------HHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHh
Q 019702 207 DEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (337)
Q Consensus 207 DEp~~~ld~~~-------l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~ 267 (337)
||||+++|.+. +..+ .+|.|+|++||+.+.. ..||+++ ++++|+++..|+.+++.+.
T Consensus 476 DEpts~LD~~~~~~i~~~l~~~-~~~~tii~itH~~~~~-~~~d~i~--~l~~G~i~~~g~~~~l~~~ 539 (569)
T PRK10789 476 DDALSAVDGRTEHQILHNLRQW-GEGRTVIISAHRLSAL-TEASEIL--VMQHGHIAQRGNHDQLAQQ 539 (569)
T ss_pred ECccccCCHHHHHHHHHHHHHH-hCCCEEEEEecchhHH-HcCCEEE--EEeCCEEEEecCHHHHHHc
Confidence 99999999532 3332 3689999999999876 4699999 9999999999999988753
No 299
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.92 E-value=9.3e-25 Score=218.90 Aligned_cols=165 Identities=18% Similarity=0.271 Sum_probs=127.0
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCC-------CeEEEEcCCcccccCCCC
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ-------KRVVIVDTSNEIGGDGDI 169 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~-------~~i~~v~~~~ei~~~~~~ 169 (337)
++++++.|+.... ++++++.+.+|+.++|+|+|||||||||++|+|.+.|+.+ .++.++.|.........+
T Consensus 6 ~~~ls~~~g~~~l--~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~~~v~~l~Q~~~~~~~~tv 83 (530)
T COG0488 6 LENLSLAYGDRPL--LENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQEPPLDPEKTV 83 (530)
T ss_pred EeeeEEeeCCcee--ecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCCceEEEeCCCCCcCCCccH
Confidence 6689999987776 9999999999999999999999999999999999988743 256677665433210000
Q ss_pred -------------------------cc----------------------cc-------ccc---chhccCCCcchhHHHH
Q 019702 170 -------------------------PH----------------------SA-------IGT---ARRMQVPEPSLQHKVM 192 (337)
Q Consensus 170 -------------------------~~----------------------~~-------~~~---~~~~~~~S~g~k~r~~ 192 (337)
+. .. ++. .+.+..+|||++.|++
T Consensus 84 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~~~~~~~LSGG~r~Rv~ 163 (530)
T COG0488 84 LDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVA 163 (530)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcccCchhhcCHHHHHHHH
Confidence 00 00 000 1345568999999999
Q ss_pred HHHHHhhCCcEEEEcCCCCHHHHHHHHHH----Hh-cCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEe-cCHHHHHH
Q 019702 193 IEAVENHMPEVIIVDEIGTEAEAHACRSI----AE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL-GDEEARAR 266 (337)
Q Consensus 193 ia~al~~~P~vlilDEp~~~ld~~~l~~~----~~-~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~-g~~~~~~~ 266 (337)
||+||..+||+|+|||||++||.+.+..+ .+ .| |+|++|||..+.+.+|++++ -++.|++..+ |..+....
T Consensus 164 LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~~g-tviiVSHDR~FLd~V~t~I~--~ld~g~l~~y~Gny~~~~~ 240 (530)
T COG0488 164 LARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRYPG-TVIVVSHDRYFLDNVATHIL--ELDRGKLTPYKGNYSSYLE 240 (530)
T ss_pred HHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCC-cEEEEeCCHHHHHHHhhheE--EecCCceeEecCCHHHHHH
Confidence 99999999999999999999998765443 23 36 99999999999999999999 7888875554 65554443
No 300
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.92 E-value=2.9e-25 Score=198.79 Aligned_cols=145 Identities=20% Similarity=0.214 Sum_probs=106.2
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEE----------------EcCC
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVI----------------VDTS 160 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~----------------v~~~ 160 (337)
+++++++|+.... ++++++.+.+|++++|+||||||||||+++|+|++.|+. +.|.+ +.+.
T Consensus 5 ~~~l~~~~~~~~~--l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~-G~i~~~g~~~~~~~~~~~~~~~~~~ 81 (207)
T PRK13539 5 GEDLACVRGGRVL--FSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAA-GTIKLDGGDIDDPDVAEACHYLGHR 81 (207)
T ss_pred EEeEEEEECCeEE--EeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC-ceEEECCEeCcchhhHhhcEEecCC
Confidence 6799999976544 999999999999999999999999999999999998873 44432 2111
Q ss_pred cccccCCCCccc-------------cc-------cc----chhccCCCcchhHHHHHHHHHhhCCcEEEEcCCCCHHHH-
Q 019702 161 NEIGGDGDIPHS-------------AI-------GT----ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEA- 215 (337)
Q Consensus 161 ~ei~~~~~~~~~-------------~~-------~~----~~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~~ld~- 215 (337)
..+.....+.++ .+ +. ......+|+||+||+++|+|++.+|++|++||||+++|.
T Consensus 82 ~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~ 161 (207)
T PRK13539 82 NAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAA 161 (207)
T ss_pred CcCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHH
Confidence 110000000000 00 00 012235799999999999999999999999999999995
Q ss_pred ------HHHHHHHhcCCeEEEEEcCcchhHHhhchHH
Q 019702 216 ------HACRSIAERGVMLIGTAHGEWLENIIKNPIL 246 (337)
Q Consensus 216 ------~~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~ 246 (337)
+.+.+++++|.|+|++||+.+++.. ++++
T Consensus 162 ~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~--~~~~ 196 (207)
T PRK13539 162 AVALFAELIRAHLAQGGIVIAATHIPLGLPG--AREL 196 (207)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEeCCchhhcc--CcEE
Confidence 3455556679999999999987765 6655
No 301
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.92 E-value=4.1e-25 Score=196.33 Aligned_cols=138 Identities=19% Similarity=0.223 Sum_probs=101.5
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeE------------------EEEc
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRV------------------VIVD 158 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i------------------~~v~ 158 (337)
+++++++|+.... ++++++.+.+|++++|+||||||||||+++|+|+++|+. +.| .++.
T Consensus 3 ~~~l~~~~~~~~~--l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~-G~i~~~g~~~~~~~~~~~~~i~~~~ 79 (198)
T TIGR01189 3 ARNLACSRGERML--FEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDS-GEVRWNGTALAEQRDEPHRNILYLG 79 (198)
T ss_pred EEEEEEEECCEEE--EeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCc-cEEEECCEEcccchHHhhhheEEec
Confidence 5689999976554 999999999999999999999999999999999998873 333 3333
Q ss_pred CCcccccCCCCc----------c--c-cccc-----------chhccCCCcchhHHHHHHHHHhhCCcEEEEcCCCCHHH
Q 019702 159 TSNEIGGDGDIP----------H--S-AIGT-----------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAE 214 (337)
Q Consensus 159 ~~~ei~~~~~~~----------~--~-~~~~-----------~~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~~ld 214 (337)
+...+.....+. . . .+.. ......+|+||+||++||+|++.+|++|++||||+++|
T Consensus 80 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD 159 (198)
T TIGR01189 80 HLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALD 159 (198)
T ss_pred cCcccccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCC
Confidence 221110000000 0 0 0000 02234579999999999999999999999999999999
Q ss_pred H-------HHHHHHHhcCCeEEEEEcCcch
Q 019702 215 A-------HACRSIAERGVMLIGTAHGEWL 237 (337)
Q Consensus 215 ~-------~~l~~~~~~G~tvi~t~H~~~~ 237 (337)
. +.+..++++|.|+|++||+...
T Consensus 160 ~~~~~~l~~~l~~~~~~~~tii~~sH~~~~ 189 (198)
T TIGR01189 160 KAGVALLAGLLRAHLARGGIVLLTTHQDLG 189 (198)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEEccccc
Confidence 5 3455555678999999998753
No 302
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.92 E-value=3.2e-25 Score=231.91 Aligned_cols=167 Identities=13% Similarity=0.175 Sum_probs=126.9
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCC------------------CeEEEEc
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ------------------KRVVIVD 158 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~------------------~~i~~v~ 158 (337)
+++++++|+.. ...++++++.+++|+.++|+||||||||||++.|+|++.|+.| ..+.+++
T Consensus 476 ~~~vsf~y~~~-~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~ 554 (708)
T TIGR01193 476 INDVSYSYGYG-SNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLP 554 (708)
T ss_pred EEEEEEEcCCC-CcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHheEEEe
Confidence 67999999743 2359999999999999999999999999999999999998732 2455666
Q ss_pred CCcccccC--------C---CCccccccc----------------------chhccCCCcchhHHHHHHHHHhhCCcEEE
Q 019702 159 TSNEIGGD--------G---DIPHSAIGT----------------------ARRMQVPEPSLQHKVMIEAVENHMPEVII 205 (337)
Q Consensus 159 ~~~ei~~~--------~---~~~~~~~~~----------------------~~~~~~~S~g~k~r~~ia~al~~~P~vli 205 (337)
|...+... + ......+.. ...-..+||||+||++||||+..+|++||
T Consensus 555 Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~p~ili 634 (708)
T TIGR01193 555 QEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLI 634 (708)
T ss_pred cCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhCCCEEE
Confidence 55433211 0 011111000 01123469999999999999999999999
Q ss_pred EcCCCCHHHHHH---H-HHHHh-cCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHh
Q 019702 206 VDEIGTEAEAHA---C-RSIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (337)
Q Consensus 206 lDEp~~~ld~~~---l-~~~~~-~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~ 267 (337)
+||||+++|.+. + ..+.+ +|.|+|++||..+.. ..||+++ ++++|++++.|+.+++...
T Consensus 635 LDE~Ts~LD~~te~~i~~~L~~~~~~T~IiitHr~~~~-~~~D~i~--~l~~G~i~~~G~~~~L~~~ 698 (708)
T TIGR01193 635 LDESTSNLDTITEKKIVNNLLNLQDKTIIFVAHRLSVA-KQSDKII--VLDHGKIIEQGSHDELLDR 698 (708)
T ss_pred EeCccccCCHHHHHHHHHHHHHhcCCEEEEEecchHHH-HcCCEEE--EEECCEEEEECCHHHHHhc
Confidence 999999999532 1 22222 478999999999876 5799999 9999999999999998753
No 303
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.92 E-value=3.9e-25 Score=230.77 Aligned_cols=166 Identities=17% Similarity=0.177 Sum_probs=126.2
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeE-------------------EEE
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRV-------------------VIV 157 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i-------------------~~v 157 (337)
+++++++|+......++++++.+++|+.++|+|+||||||||+++|+|++.|+. +.| .++
T Consensus 458 ~~~vsf~y~~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~-G~I~idg~~i~~~~~~~~r~~i~~v 536 (694)
T TIGR01846 458 FENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQH-GQVLVDGVDLAIADPAWLRRQMGVV 536 (694)
T ss_pred EEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCC-ceEEECCEehhhCCHHHHHHhCeEE
Confidence 679999997544346999999999999999999999999999999999999873 333 344
Q ss_pred cCCcccccC----------CCCccccccc----------------------chhccCCCcchhHHHHHHHHHhhCCcEEE
Q 019702 158 DTSNEIGGD----------GDIPHSAIGT----------------------ARRMQVPEPSLQHKVMIEAVENHMPEVII 205 (337)
Q Consensus 158 ~~~~ei~~~----------~~~~~~~~~~----------------------~~~~~~~S~g~k~r~~ia~al~~~P~vli 205 (337)
++...+... .......+.. ...-..+|+||+||+++|||+..+|++||
T Consensus 537 ~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~~ili 616 (694)
T TIGR01846 537 LQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILI 616 (694)
T ss_pred ccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCCCEEE
Confidence 443322110 0000000000 01123479999999999999999999999
Q ss_pred EcCCCCHHHHH-------HHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHh
Q 019702 206 VDEIGTEAEAH-------ACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (337)
Q Consensus 206 lDEp~~~ld~~-------~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~ 267 (337)
+||||+++|.+ .+..+ ..+.|+|++||..+... .||+++ ++++|++++.|+++++...
T Consensus 617 lDEpts~LD~~~~~~i~~~l~~~-~~~~t~i~itH~~~~~~-~~d~ii--~l~~G~i~~~g~~~~l~~~ 681 (694)
T TIGR01846 617 FDEATSALDYESEALIMRNMREI-CRGRTVIIIAHRLSTVR-ACDRII--VLEKGQIAESGRHEELLAL 681 (694)
T ss_pred EECCCcCCCHHHHHHHHHHHHHH-hCCCEEEEEeCChHHHH-hCCEEE--EEeCCEEEEeCCHHHHHHc
Confidence 99999999953 23333 35799999999999775 599999 9999999999999998753
No 304
>PRK13409 putative ATPase RIL; Provisional
Probab=99.92 E-value=2.9e-25 Score=226.82 Aligned_cols=158 Identities=22% Similarity=0.286 Sum_probs=119.5
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCC-----eEEEEcCCcccccCCC---
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK-----RVVIVDTSNEIGGDGD--- 168 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~-----~i~~v~~~~ei~~~~~--- 168 (337)
+++++++|+.. . ++++++.+.+|++++|+||||||||||+++|+|+++|+.+. ++.++++.........
T Consensus 343 ~~~ls~~~~~~-~--l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~~~i~y~~Q~~~~~~~~tv~e 419 (590)
T PRK13409 343 YPDLTKKLGDF-S--LEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPELKISYKPQYIKPDYDGTVED 419 (590)
T ss_pred EcceEEEECCE-E--EEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEeeeEEEecccccCCCCCcHHH
Confidence 56888888653 2 78899999999999999999999999999999999987432 2445555432211100
Q ss_pred --------Cccc-c-------cc----cchhccCCCcchhHHHHHHHHHhhCCcEEEEcCCCCHHHH-------HHHHHH
Q 019702 169 --------IPHS-A-------IG----TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEA-------HACRSI 221 (337)
Q Consensus 169 --------~~~~-~-------~~----~~~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~~ld~-------~~l~~~ 221 (337)
.... . ++ ..+.+..+|+||+||++||+||+++|++|||||||+++|. +.+.++
T Consensus 420 ~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l 499 (590)
T PRK13409 420 LLRSITDDLGSSYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRI 499 (590)
T ss_pred HHHHHhhhcChHHHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHH
Confidence 0000 0 00 0133456899999999999999999999999999999995 345556
Q ss_pred Hh-cCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecC
Q 019702 222 AE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGD 260 (337)
Q Consensus 222 ~~-~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~ 260 (337)
++ .|.|+|++|||.+++..+||+++ ++++ ++...|+
T Consensus 500 ~~~~g~tviivsHD~~~~~~~aDrvi--vl~~-~~~~~g~ 536 (590)
T PRK13409 500 AEEREATALVVDHDIYMIDYISDRLM--VFEG-EPGKHGH 536 (590)
T ss_pred HHhCCCEEEEEeCCHHHHHHhCCEEE--EEcC-cceeeee
Confidence 54 48999999999999999999999 8865 7666655
No 305
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.92 E-value=2.4e-25 Score=194.32 Aligned_cols=133 Identities=14% Similarity=0.123 Sum_probs=97.2
Q ss_pred cchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeE--------------EEEcCCcccccCCCCcccccc
Q 019702 110 GHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRV--------------VIVDTSNEIGGDGDIPHSAIG 175 (337)
Q Consensus 110 ~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i--------------~~v~~~~ei~~~~~~~~~~~~ 175 (337)
.+++++++.+.+|+.++|+|||||||||||+++.+ + .+.+ .++++ .+......+.. ..
T Consensus 9 ~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~----~-~G~v~~~~~~~~~~~~~~~~~~q-~~~l~~~~L~~--~~ 80 (176)
T cd03238 9 HNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY----A-SGKARLISFLPKFSRNKLIFIDQ-LQFLIDVGLGY--LT 80 (176)
T ss_pred eeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh----c-CCcEEECCcccccccccEEEEhH-HHHHHHcCCCc--cc
Confidence 35889999999999999999999999999999863 1 1222 22221 00000000000 00
Q ss_pred cchhccCCCcchhHHHHHHHHHhhC--CcEEEEcCCCCHHHHH-------HHHHHHhcCCeEEEEEcCcchhHHhhchHH
Q 019702 176 TARRMQVPEPSLQHKVMIEAVENHM--PEVIIVDEIGTEAEAH-------ACRSIAERGVMLIGTAHGEWLENIIKNPIL 246 (337)
Q Consensus 176 ~~~~~~~~S~g~k~r~~ia~al~~~--P~vlilDEp~~~ld~~-------~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~ 246 (337)
.......+|+||+||+++|+|++.+ |+++++|||++++|.. .+.++.+.|.|||++||+.++. ..||+++
T Consensus 81 ~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~-~~~d~i~ 159 (176)
T cd03238 81 LGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVL-SSADWII 159 (176)
T ss_pred cCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH-HhCCEEE
Confidence 1134566899999999999999999 9999999999999953 3445555799999999999987 5799998
Q ss_pred HHHhcCc
Q 019702 247 SDLIGGV 253 (337)
Q Consensus 247 ~~ll~~G 253 (337)
++++|
T Consensus 160 --~l~~g 164 (176)
T cd03238 160 --DFGPG 164 (176)
T ss_pred --EECCC
Confidence 78553
No 306
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.92 E-value=7.6e-25 Score=226.31 Aligned_cols=165 Identities=16% Similarity=0.173 Sum_probs=123.5
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEE--------EcCCcccccCCC
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVI--------VDTSNEIGGDGD 168 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~--------v~~~~ei~~~~~ 168 (337)
+++++++|+...+ ++++++.+++|++++|+|||||||||||++|+|++.|+. +.|.+ +++.........
T Consensus 6 i~~ls~~~~~~~i--l~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~-G~I~~~~~~~~~~l~q~~~~~~~~~ 82 (635)
T PRK11147 6 IHGAWLSFSDAPL--LDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDD-GRIIYEQDLIVARLQQDPPRNVEGT 82 (635)
T ss_pred EeeEEEEeCCcee--EeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCC-eEEEeCCCCEEEEeccCCCCCCCCC
Confidence 6799999986554 999999999999999999999999999999999998873 44332 222110000000
Q ss_pred Ccc---------------------------------------------------ccc-------c--cchhccCCCcchh
Q 019702 169 IPH---------------------------------------------------SAI-------G--TARRMQVPEPSLQ 188 (337)
Q Consensus 169 ~~~---------------------------------------------------~~~-------~--~~~~~~~~S~g~k 188 (337)
+.+ ..+ + ..+.+..+|+||+
T Consensus 83 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~LSgGek 162 (635)
T PRK11147 83 VYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLDPDAALSSLSGGWL 162 (635)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCCCCCchhhcCHHHH
Confidence 000 000 0 0123456799999
Q ss_pred HHHHHHHHHhhCCcEEEEcCCCCHHHHHHH---HHH-HhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEE-ecCHHH
Q 019702 189 HKVMIEAVENHMPEVIIVDEIGTEAEAHAC---RSI-AERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVT-LGDEEA 263 (337)
Q Consensus 189 ~r~~ia~al~~~P~vlilDEp~~~ld~~~l---~~~-~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~-~g~~~~ 263 (337)
||++||+||+.+|++|||||||+++|.... ..+ .+.+.|||++||+..++..+||+++ .+++|+++. .|++++
T Consensus 163 qRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~~tvlivsHd~~~l~~~~d~i~--~L~~G~i~~~~g~~~~ 240 (635)
T PRK11147 163 RKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQGSIIFISHDRSFIRNMATRIV--DLDRGKLVSYPGNYDQ 240 (635)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhcCeEE--EEECCEEEEecCCHHH
Confidence 999999999999999999999999996543 222 3335699999999999999999999 899999875 588776
Q ss_pred HHH
Q 019702 264 RAR 266 (337)
Q Consensus 264 ~~~ 266 (337)
.+.
T Consensus 241 ~~~ 243 (635)
T PRK11147 241 YLL 243 (635)
T ss_pred HHH
Confidence 554
No 307
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.92 E-value=5.2e-25 Score=225.63 Aligned_cols=166 Identities=13% Similarity=0.125 Sum_probs=125.2
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCC------------------CeEEEEc
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ------------------KRVVIVD 158 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~------------------~~i~~v~ 158 (337)
+++++++|+... ..++++++.+++|+.++|+||||||||||++.|+|+++|+.+ ..+.+++
T Consensus 337 ~~~v~~~y~~~~-~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~ 415 (585)
T TIGR01192 337 FRHITFEFANSS-QGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVF 415 (585)
T ss_pred EEEEEEECCCCC-ccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhheEEEc
Confidence 679999997532 249999999999999999999999999999999999998732 1234444
Q ss_pred CCcccccC-------CCCc---cccccc----------------------chhccCCCcchhHHHHHHHHHhhCCcEEEE
Q 019702 159 TSNEIGGD-------GDIP---HSAIGT----------------------ARRMQVPEPSLQHKVMIEAVENHMPEVIIV 206 (337)
Q Consensus 159 ~~~ei~~~-------~~~~---~~~~~~----------------------~~~~~~~S~g~k~r~~ia~al~~~P~vlil 206 (337)
+...+... ...+ ...+.. ......+||||+||++||||+..+|++||+
T Consensus 416 q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p~ilil 495 (585)
T TIGR01192 416 QDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVL 495 (585)
T ss_pred cCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 44322110 0000 000000 011234799999999999999999999999
Q ss_pred cCCCCHHHHHH-------HHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHh
Q 019702 207 DEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (337)
Q Consensus 207 DEp~~~ld~~~-------l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~ 267 (337)
||||+++|.+. +.++ ..+.|+|++||+.+... .||+++ ++++|+++..|+.+++...
T Consensus 496 DEpts~LD~~~~~~i~~~l~~~-~~~~tvI~isH~~~~~~-~~d~i~--~l~~G~i~~~g~~~~l~~~ 559 (585)
T TIGR01192 496 DEATSALDVETEARVKNAIDAL-RKNRTTFIIAHRLSTVR-NADLVL--FLDQGRLIEKGSFQELIQK 559 (585)
T ss_pred ECCccCCCHHHHHHHHHHHHHH-hCCCEEEEEEcChHHHH-cCCEEE--EEECCEEEEECCHHHHHHC
Confidence 99999999532 3332 35899999999998874 599999 9999999999999988753
No 308
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=4.4e-25 Score=215.22 Aligned_cols=166 Identities=11% Similarity=0.134 Sum_probs=127.0
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEc------------------
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD------------------ 158 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~------------------ 158 (337)
++|++|+|......+++++++.+++||.++|+|++||||||+++.|.|.+.|+. +.|..-.
T Consensus 339 ~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~-G~i~~~g~~~~~l~~~~~~e~i~vl 417 (573)
T COG4987 339 LRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQ-GSITLNGVEIASLDEQALRETISVL 417 (573)
T ss_pred eccceeecCCCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCC-CeeeECCcChhhCChhhHHHHHhhh
Confidence 679999999888778999999999999999999999999999999999999883 4443221
Q ss_pred -CCcccccCCCCccc-----------ccc-cch-----------------hc----cCCCcchhHHHHHHHHHhhCCcEE
Q 019702 159 -TSNEIGGDGDIPHS-----------AIG-TAR-----------------RM----QVPEPSLQHKVMIEAVENHMPEVI 204 (337)
Q Consensus 159 -~~~ei~~~~~~~~~-----------~~~-~~~-----------------~~----~~~S~g~k~r~~ia~al~~~P~vl 204 (337)
|+..+.. +.+.++ .+. ..+ ++ .-+|||++||++|||++.++..++
T Consensus 418 ~Qr~hlF~-~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~ 496 (573)
T COG4987 418 TQRVHLFS-GTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLW 496 (573)
T ss_pred ccchHHHH-HHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCeE
Confidence 1111100 000000 000 000 11 135999999999999999999999
Q ss_pred EEcCCCCHHHHH----HHHHH--HhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHh
Q 019702 205 IVDEIGTEAEAH----ACRSI--AERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (337)
Q Consensus 205 ilDEp~~~ld~~----~l~~~--~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~ 267 (337)
+|||||.++|.. .+..+ .-+|+|+|++||..... ..||+++ ++++|++++.|+++++...
T Consensus 497 lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHrL~~l-e~~drIi--vl~~Gkiie~G~~~~Ll~~ 562 (573)
T COG4987 497 LLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGL-ERMDRII--VLDNGKIIEEGTHAELLAN 562 (573)
T ss_pred EecCCcccCChhhHHHHHHHHHHHhcCCeEEEEecccccH-hhcCEEE--EEECCeeeecCCHHhhhcc
Confidence 999999999952 23222 34589999999999866 4899999 9999999999999998863
No 309
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.92 E-value=5.8e-25 Score=225.46 Aligned_cols=166 Identities=16% Similarity=0.200 Sum_probs=126.0
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCC------------------CeEEEEc
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ------------------KRVVIVD 158 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~------------------~~i~~v~ 158 (337)
+++++++|+.. ...++++++.+++|+.++|+|+||||||||++.|+|+++|+.+ .++.+++
T Consensus 337 ~~~vsf~y~~~-~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~ 415 (588)
T PRK13657 337 FDDVSFSYDNS-RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVF 415 (588)
T ss_pred EEEEEEEeCCC-CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheEEEe
Confidence 67999999743 2359999999999999999999999999999999999998732 2455666
Q ss_pred CCcccccC--------C--CCccccccc----------c------------hhccCCCcchhHHHHHHHHHhhCCcEEEE
Q 019702 159 TSNEIGGD--------G--DIPHSAIGT----------A------------RRMQVPEPSLQHKVMIEAVENHMPEVIIV 206 (337)
Q Consensus 159 ~~~ei~~~--------~--~~~~~~~~~----------~------------~~~~~~S~g~k~r~~ia~al~~~P~vlil 206 (337)
+...+... + ......+.. . ..-..+||||+||++||||+..+|+++|+
T Consensus 416 Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~~iliL 495 (588)
T PRK13657 416 QDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILIL 495 (588)
T ss_pred cCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 55433211 0 000110000 0 11124799999999999999999999999
Q ss_pred cCCCCHHHHHH---H-HHHH--hcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHH
Q 019702 207 DEIGTEAEAHA---C-RSIA--ERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (337)
Q Consensus 207 DEp~~~ld~~~---l-~~~~--~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~ 266 (337)
||||+++|.+. + ..+. ..++|+|++||+.+.. ..||+++ .+++|+++..|+.+++..
T Consensus 496 DEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~-~~~D~ii--~l~~G~i~~~g~~~~l~~ 558 (588)
T PRK13657 496 DEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTV-RNADRIL--VFDNGRVVESGSFDELVA 558 (588)
T ss_pred eCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHH-HhCCEEE--EEECCEEEEeCCHHHHHH
Confidence 99999999532 1 2222 2479999999999866 5799999 999999999999998865
No 310
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.92 E-value=3.4e-25 Score=214.44 Aligned_cols=167 Identities=17% Similarity=0.194 Sum_probs=134.6
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccC------------------CCeEEEEc
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEF------------------QKRVVIVD 158 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~------------------~~~i~~v~ 158 (337)
++++++--+......+++++|.+.+|+.++|+||+|||||||.|.|.|.++|.. +++|+|++
T Consensus 337 Ve~l~~~PPg~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLP 416 (580)
T COG4618 337 VERLTAAPPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLP 416 (580)
T ss_pred EeeeeecCCCCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCc
Confidence 446666444445567999999999999999999999999999999999999873 46888888
Q ss_pred CCcccccCCCCcccc------------cccc---------------------hhccCCCcchhHHHHHHHHHhhCCcEEE
Q 019702 159 TSNEIGGDGDIPHSA------------IGTA---------------------RRMQVPEPSLQHKVMIEAVENHMPEVII 205 (337)
Q Consensus 159 ~~~ei~~~~~~~~~~------------~~~~---------------------~~~~~~S~g~k~r~~ia~al~~~P~vli 205 (337)
|..|+.. +.+.++. +... ..-..+|+|||||+++|||+..+|.+++
T Consensus 417 QdVeLF~-GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvV 495 (580)
T COG4618 417 QDVELFD-GTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVV 495 (580)
T ss_pred ccceecC-CcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEE
Confidence 8877632 1121111 0000 0011369999999999999999999999
Q ss_pred EcCCCCHHH-------HHHHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHh
Q 019702 206 VDEIGTEAE-------AHACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (337)
Q Consensus 206 lDEp~~~ld-------~~~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~ 267 (337)
||||-+++| .+++..++++|.|+|+++|-.+.. ..+|+++ +|++|++-.+|+.++++..
T Consensus 496 LDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L-~~~Dkil--vl~~G~~~~FG~r~eVLa~ 561 (580)
T COG4618 496 LDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSAL-ASVDKIL--VLQDGRIAAFGPREEVLAK 561 (580)
T ss_pred ecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHH-hhcceee--eecCChHHhcCCHHHHHHH
Confidence 999999999 367788889999999999999855 6899999 9999999999999999874
No 311
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.92 E-value=7.4e-25 Score=223.78 Aligned_cols=164 Identities=16% Similarity=0.206 Sum_probs=124.9
Q ss_pred EeeEEEEECC-ccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEE-------------------
Q 019702 97 IVGLTCRVGR-AVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVI------------------- 156 (337)
Q Consensus 97 i~~l~~r~~~-~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~------------------- 156 (337)
+++++++|++ ... ++++++.+++|+.++|+|||||||||+++.|.|++.|+ .+.|.+
T Consensus 331 f~~vsf~y~~~~~v--l~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~-~G~I~idg~dI~~i~~~~lr~~I~~ 407 (567)
T COG1132 331 FENVSFSYPGKKPV--LKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPT-SGEILIDGIDIRDISLDSLRKRIGI 407 (567)
T ss_pred EEEEEEEcCCCCcc--ccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC-CCeEEECCEehhhcCHHHHHHhccE
Confidence 6699999985 444 99999999999999999999999999999999999986 344433
Q ss_pred EcCCcccccC-------CCCc---cccccc------------------c----hhccCCCcchhHHHHHHHHHhhCCcEE
Q 019702 157 VDTSNEIGGD-------GDIP---HSAIGT------------------A----RRMQVPEPSLQHKVMIEAVENHMPEVI 204 (337)
Q Consensus 157 v~~~~ei~~~-------~~~~---~~~~~~------------------~----~~~~~~S~g~k~r~~ia~al~~~P~vl 204 (337)
++|...+... .+.+ ...+.. . .+-..+|||||||++||||+..+|++|
T Consensus 408 V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~IL 487 (567)
T COG1132 408 VSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPIL 487 (567)
T ss_pred EcccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCCCEE
Confidence 3332211110 0000 000000 0 112246999999999999999999999
Q ss_pred EEcCCCCHHHHH-------HHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHh
Q 019702 205 IVDEIGTEAEAH-------ACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (337)
Q Consensus 205 ilDEp~~~ld~~-------~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~ 267 (337)
+|||||+.+|.+ ++..+. ++.|+++++|.++.+.. ||+++ ++++|++++.|+++++...
T Consensus 488 ILDEaTSalD~~tE~~I~~~l~~l~-~~rT~iiIaHRlsti~~-aD~Ii--Vl~~G~i~e~G~h~eLl~~ 553 (567)
T COG1132 488 ILDEATSALDTETEALIQDALKKLL-KGRTTLIIAHRLSTIKN-ADRII--VLDNGRIVERGTHEELLAK 553 (567)
T ss_pred EEeccccccCHHhHHHHHHHHHHHh-cCCEEEEEeccHhHHHh-CCEEE--EEECCEEEEecCHHHHHHc
Confidence 999999999953 233333 56799999999987765 99999 9999999999999999874
No 312
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.92 E-value=3.2e-25 Score=223.34 Aligned_cols=152 Identities=12% Similarity=0.066 Sum_probs=117.3
Q ss_pred chhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEE--------------------EEcCCcc---cccC-
Q 019702 111 HIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVV--------------------IVDTSNE---IGGD- 166 (337)
Q Consensus 111 ~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~--------------------~v~~~~e---i~~~- 166 (337)
.++++++.+.+|++++|+||||||||||+++|+|+++|+. +.|. ++++... +...
T Consensus 268 ~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~-G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~ 346 (501)
T PRK11288 268 LREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTA-GQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPVH 346 (501)
T ss_pred cccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCC-ceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCCC
Confidence 4799999999999999999999999999999999998763 3333 3333211 1000
Q ss_pred --------CCC----------cc-c---c-------ccc-----chhccCCCcchhHHHHHHHHHhhCCcEEEEcCCCCH
Q 019702 167 --------GDI----------PH-S---A-------IGT-----ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTE 212 (337)
Q Consensus 167 --------~~~----------~~-~---~-------~~~-----~~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~~ 212 (337)
... .. . . ++. .+....+|+|||||++||+|++.+|++|||||||++
T Consensus 347 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~al~~~p~lllLDEPt~~ 426 (501)
T PRK11288 347 SVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGRWLSEDMKVILLDEPTRG 426 (501)
T ss_pred CHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHHHHccCCCEEEEcCCCCC
Confidence 000 00 0 0 000 122345799999999999999999999999999999
Q ss_pred HHH-------HHHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHH
Q 019702 213 AEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARA 265 (337)
Q Consensus 213 ld~-------~~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~ 265 (337)
+|. +.+.++++.|.|||++||+++++..+||+++ ++++|++++.|++++..
T Consensus 427 LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~i~--~l~~g~i~~~~~~~~~~ 484 (501)
T PRK11288 427 IDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIV--VMREGRIAGELAREQAT 484 (501)
T ss_pred CCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCEEE--EEECCEEEEEEccccCC
Confidence 995 3455667779999999999999999999999 99999999999887654
No 313
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.92 E-value=8.3e-25 Score=223.41 Aligned_cols=167 Identities=17% Similarity=0.225 Sum_probs=126.6
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCC------------------CeEEEEc
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ------------------KRVVIVD 158 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~------------------~~i~~v~ 158 (337)
+++++++|.......++++++.+++|+.++|+|+||||||||++.|+|++.|+.| .++.+++
T Consensus 333 ~~~v~f~y~~~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~ 412 (571)
T TIGR02203 333 FRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVS 412 (571)
T ss_pred EEEEEEEcCCCCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhceEEc
Confidence 6799999965333359999999999999999999999999999999999998732 2345555
Q ss_pred CCcccccC--------C---CCccccccc----------c------------hhccCCCcchhHHHHHHHHHhhCCcEEE
Q 019702 159 TSNEIGGD--------G---DIPHSAIGT----------A------------RRMQVPEPSLQHKVMIEAVENHMPEVII 205 (337)
Q Consensus 159 ~~~ei~~~--------~---~~~~~~~~~----------~------------~~~~~~S~g~k~r~~ia~al~~~P~vli 205 (337)
|.+.+... + ......+.. . ..-..+||||+||++||||+..+|++++
T Consensus 413 Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~~~ill 492 (571)
T TIGR02203 413 QDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILI 492 (571)
T ss_pred cCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEE
Confidence 54433211 0 011110000 0 1112479999999999999999999999
Q ss_pred EcCCCCHHHHHH-------HHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHh
Q 019702 206 VDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (337)
Q Consensus 206 lDEp~~~ld~~~-------l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~ 267 (337)
+||||+++|.+. +..+ ..++|+|++||+.+.. ..||+++ .+++|+++..|+.+++++.
T Consensus 493 LDEpts~LD~~~~~~i~~~L~~~-~~~~tiIiitH~~~~~-~~~D~ii--~l~~g~i~~~g~~~~l~~~ 557 (571)
T TIGR02203 493 LDEATSALDNESERLVQAALERL-MQGRTTLVIAHRLSTI-EKADRIV--VMDDGRIVERGTHNELLAR 557 (571)
T ss_pred EeCccccCCHHHHHHHHHHHHHH-hCCCEEEEEehhhHHH-HhCCEEE--EEeCCEEEeeCCHHHHHHc
Confidence 999999999532 2222 3479999999999865 5799999 8999999999999998753
No 314
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.92 E-value=3.3e-25 Score=223.65 Aligned_cols=154 Identities=16% Similarity=0.162 Sum_probs=118.1
Q ss_pred chhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCC-------------------CeEEEEcCCcc---cccCC-
Q 019702 111 HIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ-------------------KRVVIVDTSNE---IGGDG- 167 (337)
Q Consensus 111 ~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~-------------------~~i~~v~~~~e---i~~~~- 167 (337)
.++++++.+++|++++|+||||||||||+++|+|+++|+.+ .++.|+++... +....
T Consensus 278 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~~t 357 (510)
T PRK15439 278 GFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLDAP 357 (510)
T ss_pred CccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCCCc
Confidence 38899999999999999999999999999999999987631 12444443210 10000
Q ss_pred -------------CC---cc-c--c-------ccc-----chhccCCCcchhHHHHHHHHHhhCCcEEEEcCCCCHHHH-
Q 019702 168 -------------DI---PH-S--A-------IGT-----ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEA- 215 (337)
Q Consensus 168 -------------~~---~~-~--~-------~~~-----~~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~~ld~- 215 (337)
.. .. . . ++. .+....+|+|||||++||+|++.+|++|||||||+++|.
T Consensus 358 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~ 437 (510)
T PRK15439 358 LAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVS 437 (510)
T ss_pred HHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHHhhCCCEEEECCCCcCcChh
Confidence 00 00 0 0 000 122345799999999999999999999999999999995
Q ss_pred ------HHHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHH
Q 019702 216 ------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (337)
Q Consensus 216 ------~~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~ 266 (337)
+.+.+++++|.|||++||+++++..+||+++ ++++|+++..|+++++..
T Consensus 438 ~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~--~l~~G~i~~~~~~~~~~~ 492 (510)
T PRK15439 438 ARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVL--VMHQGEISGALTGAAINV 492 (510)
T ss_pred HHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEE--EEECCEEEEEEccccCCH
Confidence 3455666679999999999999999999999 999999999999887653
No 315
>PLN03073 ABC transporter F family; Provisional
Probab=99.92 E-value=1.3e-24 Score=226.10 Aligned_cols=165 Identities=14% Similarity=0.144 Sum_probs=124.0
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCC-------CeEEEEcCCccccc-C--
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ-------KRVVIVDTSNEIGG-D-- 166 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~-------~~i~~v~~~~ei~~-~-- 166 (337)
+++++++|+... ..++++++.+.+|++++|+|||||||||||++|+|+++|+.+ .++.|+++...... .
T Consensus 511 ~~~ls~~y~~~~-~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~~~igyv~Q~~~~~l~~~~ 589 (718)
T PLN03073 511 FSDASFGYPGGP-LLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAKVRMAVFSQHHVDGLDLSS 589 (718)
T ss_pred EEeeEEEeCCCC-eeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCceeEEEEeccccccCCcch
Confidence 678999996432 248999999999999999999999999999999999988743 13556655321000 0
Q ss_pred -------CCCc---ccc-------ccc-----chhccCCCcchhHHHHHHHHHhhCCcEEEEcCCCCHHHHHHH----HH
Q 019702 167 -------GDIP---HSA-------IGT-----ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHAC----RS 220 (337)
Q Consensus 167 -------~~~~---~~~-------~~~-----~~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~~ld~~~l----~~ 220 (337)
...+ ... ++. .+....+|+||+||++||++++.+|++|||||||+++|.... ..
T Consensus 590 ~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~ 669 (718)
T PLN03073 590 NPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQG 669 (718)
T ss_pred hHHHHHHHhcCCCCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHH
Confidence 0000 000 000 123456899999999999999999999999999999996432 22
Q ss_pred HHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEE-EecCHHHH
Q 019702 221 IAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTV-TLGDEEAR 264 (337)
Q Consensus 221 ~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv-~~g~~~~~ 264 (337)
+.+.+.|||++||+.+++..+||+++ ++++|+++ +.|++++.
T Consensus 670 L~~~~gtvIivSHd~~~i~~~~drv~--~l~~G~i~~~~g~~~~~ 712 (718)
T PLN03073 670 LVLFQGGVLMVSHDEHLISGSVDELW--VVSEGKVTPFHGTFHDY 712 (718)
T ss_pred HHHcCCEEEEEECCHHHHHHhCCEEE--EEECCEEEEeCCCHHHH
Confidence 33334599999999999999999999 99999988 67877764
No 316
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.91 E-value=1.8e-24 Score=220.19 Aligned_cols=166 Identities=17% Similarity=0.244 Sum_probs=123.4
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCC-------eEEEEcCCcc-cccC--
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK-------RVVIVDTSNE-IGGD-- 166 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~-------~i~~v~~~~e-i~~~-- 166 (337)
+++++++|++... ++++++.+.+|++++|+||||||||||+++|+|+++|+.+. ++.++++... +...
T Consensus 325 ~~~l~~~~~~~~~--l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~~~~i~~v~q~~~~~~~~~t 402 (552)
T TIGR03719 325 AENLSKGFGDKLL--IDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGETVKLAYVDQSRDALDPNKT 402 (552)
T ss_pred EeeEEEEECCeee--eccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECCceEEEEEeCCccccCCCCc
Confidence 6789999976544 99999999999999999999999999999999999887431 3566665432 1100
Q ss_pred ------C-----CCcc-c--------cccc-----chhccCCCcchhHHHHHHHHHhhCCcEEEEcCCCCHHHHHHH---
Q 019702 167 ------G-----DIPH-S--------AIGT-----ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHAC--- 218 (337)
Q Consensus 167 ------~-----~~~~-~--------~~~~-----~~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~~ld~~~l--- 218 (337)
. .... . .++. .+.+..+|+||+||++||+|++.+|++||+||||+++|....
T Consensus 403 v~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l 482 (552)
T TIGR03719 403 VWEEISGGLDIIQLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRAL 482 (552)
T ss_pred HHHHHHhhccccccCcchHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Confidence 0 0000 0 0010 123456799999999999999999999999999999996432
Q ss_pred HH-HHhcCCeEEEEEcCcchhHHhhchHHHHHhcC-ceEE-EecCHHHHHH
Q 019702 219 RS-IAERGVMLIGTAHGEWLENIIKNPILSDLIGG-VDTV-TLGDEEARAR 266 (337)
Q Consensus 219 ~~-~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~-G~iv-~~g~~~~~~~ 266 (337)
.+ +.+.+.+||++||+.+++..+||+++ ++++ |+++ +.|+.++...
T Consensus 483 ~~~l~~~~~~viivsHd~~~~~~~~d~i~--~l~~~~~~~~~~g~~~~~~~ 531 (552)
T TIGR03719 483 EEALLEFAGCAVVISHDRWFLDRIATHIL--AFEGDSHVEWFEGNYSEYEE 531 (552)
T ss_pred HHHHHHCCCeEEEEeCCHHHHHHhCCEEE--EEECCCeEEEeCCCHHHHHH
Confidence 22 23334589999999999999999999 8875 6765 5577765543
No 317
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.91 E-value=2.2e-24 Score=219.82 Aligned_cols=167 Identities=16% Similarity=0.203 Sum_probs=124.5
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCC-------eEEEEcCCc-ccccC--
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK-------RVVIVDTSN-EIGGD-- 166 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~-------~i~~v~~~~-ei~~~-- 166 (337)
+++++++|++... ++++++.+.+|++++|+||||||||||+++|+|+++|+.+. ++.|+++.. .+...
T Consensus 327 ~~~l~~~~~~~~~--l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~q~~~~~~~~~t 404 (556)
T PRK11819 327 AENLSKSFGDRLL--IDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGETVKLAYVDQSRDALDPNKT 404 (556)
T ss_pred EEeEEEEECCeee--ecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEeCchhhcCCCCC
Confidence 7799999976544 99999999999999999999999999999999999887431 355666543 11110
Q ss_pred --------C---CCcc-c-c-------ccc-----chhccCCCcchhHHHHHHHHHhhCCcEEEEcCCCCHHHHHH---H
Q 019702 167 --------G---DIPH-S-A-------IGT-----ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA---C 218 (337)
Q Consensus 167 --------~---~~~~-~-~-------~~~-----~~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~~ld~~~---l 218 (337)
. .... . . ++. .+....+|+||+||++||+|++.+|++|||||||+++|... +
T Consensus 405 v~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l 484 (556)
T PRK11819 405 VWEEISGGLDIIKVGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRAL 484 (556)
T ss_pred HHHHHHhhcccccccccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHH
Confidence 0 0000 0 0 000 12345689999999999999999999999999999999643 2
Q ss_pred HHH-HhcCCeEEEEEcCcchhHHhhchHHHHHhc-CceEE-EecCHHHHHHh
Q 019702 219 RSI-AERGVMLIGTAHGEWLENIIKNPILSDLIG-GVDTV-TLGDEEARARR 267 (337)
Q Consensus 219 ~~~-~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~-~G~iv-~~g~~~~~~~~ 267 (337)
.++ .+.+.+||++||+.+++..+||+++ +++ +|++. ..|+.++.+..
T Consensus 485 ~~~l~~~~~tvi~vtHd~~~~~~~~d~i~--~l~~~g~~~~~~g~~~~~~~~ 534 (556)
T PRK11819 485 EEALLEFPGCAVVISHDRWFLDRIATHIL--AFEGDSQVEWFEGNFQEYEED 534 (556)
T ss_pred HHHHHhCCCeEEEEECCHHHHHHhCCEEE--EEECCCeEEEecCCHHHHHHH
Confidence 222 2323489999999999999999999 887 47765 57888776553
No 318
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.91 E-value=6e-25 Score=220.80 Aligned_cols=159 Identities=16% Similarity=0.135 Sum_probs=118.8
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEE--------------------E
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVV--------------------I 156 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~--------------------~ 156 (337)
++++++++ . ..++++++.+.+|++++|+||||||||||+++|+|+++|+ .+.|. +
T Consensus 253 ~~~l~~~~--~--~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~-~G~i~~~g~~i~~~~~~~~~~~~i~~ 327 (491)
T PRK10982 253 VRNLTSLR--Q--PSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKS-AGTITLHGKKINNHNANEAINHGFAL 327 (491)
T ss_pred EeCccccc--C--cccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCC-ccEEEECCEECCCCCHHHHHHCCCEE
Confidence 44565552 1 2489999999999999999999999999999999999886 33333 2
Q ss_pred EcCCcc----cccCC-----------------C-Ccccc-------------cc---cchhccCCCcchhHHHHHHHHHh
Q 019702 157 VDTSNE----IGGDG-----------------D-IPHSA-------------IG---TARRMQVPEPSLQHKVMIEAVEN 198 (337)
Q Consensus 157 v~~~~e----i~~~~-----------------~-~~~~~-------------~~---~~~~~~~~S~g~k~r~~ia~al~ 198 (337)
+++... +.... . ..... +. ..+....+|+|||||++||+|++
T Consensus 328 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~ 407 (491)
T PRK10982 328 VTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWLL 407 (491)
T ss_pred cCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHHHHHHHHh
Confidence 222110 00000 0 00000 00 01233457999999999999999
Q ss_pred hCCcEEEEcCCCCHHHH-------HHHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHH
Q 019702 199 HMPEVIIVDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEE 262 (337)
Q Consensus 199 ~~P~vlilDEp~~~ld~-------~~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~ 262 (337)
.+|++|||||||+++|. +.+..+.++|.|||++||+++++..+||+++ ++++|+++..++++
T Consensus 408 ~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~--~l~~g~i~~~~~~~ 476 (491)
T PRK10982 408 TQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRIL--VMSNGLVAGIVDTK 476 (491)
T ss_pred cCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCCEEE--EEECCEEEEEEccc
Confidence 99999999999999995 3456667779999999999999999999999 99999999877664
No 319
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=1.4e-24 Score=211.90 Aligned_cols=166 Identities=15% Similarity=0.179 Sum_probs=128.1
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHcccccc-----------------CCCeEEEEcC
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDE-----------------FQKRVVIVDT 159 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~-----------------~~~~i~~v~~ 159 (337)
++++++.|++..+ .++.++|.+++|+.++|+|+|||||||++|+|.++.... .++-|++++|
T Consensus 354 F~dV~f~y~~k~~-iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d~sG~I~IdG~dik~~~~~SlR~~Ig~VPQ 432 (591)
T KOG0057|consen 354 FDDVHFSYGPKRK-VLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFDYSGSILIDGQDIKEVSLESLRQSIGVVPQ 432 (591)
T ss_pred EEeeEEEeCCCCc-eecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhccCCcEEECCeeHhhhChHHhhhheeEeCC
Confidence 5699999997762 499999999999999999999999999999999998732 0234556666
Q ss_pred CcccccCC-------CCc----ccccccc---------------------hhccCCCcchhHHHHHHHHHhhCCcEEEEc
Q 019702 160 SNEIGGDG-------DIP----HSAIGTA---------------------RRMQVPEPSLQHKVMIEAVENHMPEVIIVD 207 (337)
Q Consensus 160 ~~ei~~~~-------~~~----~~~~~~~---------------------~~~~~~S~g~k~r~~ia~al~~~P~vlilD 207 (337)
...+.... +-+ +..+..+ ++-..+|||||||+++|||+..+|+++++|
T Consensus 433 d~~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~D 512 (591)
T KOG0057|consen 433 DSVLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLD 512 (591)
T ss_pred cccccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEec
Confidence 54332110 000 0000000 223346999999999999999999999999
Q ss_pred CCCCHHHHH----HHHHHH--hcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHH
Q 019702 208 EIGTEAEAH----ACRSIA--ERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (337)
Q Consensus 208 Ep~~~ld~~----~l~~~~--~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~ 266 (337)
||||.+|.+ .+..+. ..|.|+|++.|+.+.. .-||+++ ++++|++...|+.++++.
T Consensus 513 EaTS~LD~~TE~~i~~~i~~~~~~rTvI~IvH~l~ll-~~~DkI~--~l~nG~v~e~gth~ell~ 574 (591)
T KOG0057|consen 513 EATSALDSETEREILDMIMDVMSGRTVIMIVHRLDLL-KDFDKII--VLDNGTVKEYGTHSELLA 574 (591)
T ss_pred CcccccchhhHHHHHHHHHHhcCCCeEEEEEecchhH-hcCCEEE--EEECCeeEEeccHHHHhh
Confidence 999999953 344443 4589999999999976 5799999 999999999999999886
No 320
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.91 E-value=7.4e-25 Score=209.16 Aligned_cols=140 Identities=17% Similarity=0.251 Sum_probs=104.7
Q ss_pred EEcCCCCcHHHHHHHHHccccccCC----------------CeEEEEcCCcccccCCCC-------------cccc----
Q 019702 127 FVGRPGVGKTTVMREIARVLSDEFQ----------------KRVVIVDTSNEIGGDGDI-------------PHSA---- 173 (337)
Q Consensus 127 IiGpnGsGKTTLL~~l~gll~~~~~----------------~~i~~v~~~~ei~~~~~~-------------~~~~---- 173 (337)
|+|||||||||||++|+|+++|+.+ +++.++.+...+.....+ +...
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~ 80 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIKPR 80 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHHHH
Confidence 6899999999999999999988732 123444433221110000 0000
Q ss_pred cc-c----------chhccCCCcchhHHHHHHHHHhhCCcEEEEcCCCCHHHHH-------HHHHHHh-cCCeEEEEEcC
Q 019702 174 IG-T----------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAH-------ACRSIAE-RGVMLIGTAHG 234 (337)
Q Consensus 174 ~~-~----------~~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~~ld~~-------~l~~~~~-~G~tvi~t~H~ 234 (337)
+. . .+....+|+||+||++||+|++.+|++||||||++++|.. .+.++.+ .|.|+|++||+
T Consensus 81 ~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiiivTHd 160 (325)
T TIGR01187 81 VLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHD 160 (325)
T ss_pred HHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 00 0 0223457999999999999999999999999999999953 3455554 48999999999
Q ss_pred cchhHHhhchHHHHHhcCceEEEecCHHHHHHhh
Q 019702 235 EWLENIIKNPILSDLIGGVDTVTLGDEEARARRC 268 (337)
Q Consensus 235 ~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~~ 268 (337)
.+++..+||+++ +|++|+++..|++++++..+
T Consensus 161 ~~e~~~~~d~i~--vl~~G~i~~~g~~~~~~~~~ 192 (325)
T TIGR01187 161 QEEAMTMSDRIA--IMRKGKIAQIGTPEEIYEEP 192 (325)
T ss_pred HHHHHHhCCEEE--EEECCEEEEEcCHHHHHhCC
Confidence 999999999999 99999999999999998754
No 321
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.91 E-value=8.2e-25 Score=202.00 Aligned_cols=160 Identities=16% Similarity=0.145 Sum_probs=114.7
Q ss_pred eEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEE----------EEcCCc-------
Q 019702 99 GLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVV----------IVDTSN------- 161 (337)
Q Consensus 99 ~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~----------~v~~~~------- 161 (337)
+++++|+... ..+++++ .+.+|++++|+|||||||||||++|+|+++|+ .+.|. .++...
T Consensus 5 ~~~~~y~~~~-~~l~~i~-~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~-~G~I~~~~~~~~~~~~~~g~~~~~~~~~ 81 (255)
T cd03236 5 EPVHRYGPNS-FKLHRLP-VPREGQVLGLVGPNGIGKSTALKILAGKLKPN-LGKFDDPPDWDEILDEFRGSELQNYFTK 81 (255)
T ss_pred CcceeecCcc-hhhhcCC-CCCCCCEEEEECCCCCCHHHHHHHHhCCcCCC-CceEeeccccchhhhhccCchhhhhhHH
Confidence 6889997543 2488998 59999999999999999999999999999988 45553 111100
Q ss_pred ------ccccC----CCCcc------------cc-----------ccc----chhccCCCcchhHHHHHHHHHhhCCcEE
Q 019702 162 ------EIGGD----GDIPH------------SA-----------IGT----ARRMQVPEPSLQHKVMIEAVENHMPEVI 204 (337)
Q Consensus 162 ------ei~~~----~~~~~------------~~-----------~~~----~~~~~~~S~g~k~r~~ia~al~~~P~vl 204 (337)
.+.+. ...+. .. ++. ......+|+||+||+++|++++.+|+++
T Consensus 82 ~~~~~~~i~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~il 161 (255)
T cd03236 82 LLEGDVKVIVKPQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDADFY 161 (255)
T ss_pred hhhcccceeeecchhccCchHHHHHHHHHhchhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHhCCCEE
Confidence 00000 00000 00 000 0223347999999999999999999999
Q ss_pred EEcCCCCHHHHH-------HHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEE---ecCHHHH
Q 019702 205 IVDEIGTEAEAH-------ACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVT---LGDEEAR 264 (337)
Q Consensus 205 ilDEp~~~ld~~-------~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~---~g~~~~~ 264 (337)
++||||+++|.. .+.++.++|.+||++||+.+.+..+||+++ +++ |++++ .|.|...
T Consensus 162 llDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~~~~~~ad~i~--~l~-~~~~~~~~~~~~~~~ 228 (255)
T cd03236 162 FFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLAVLDYLSDYIH--CLY-GEPGAYGVVTLPKSV 228 (255)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEE--EEC-CCCCcceeeecCccH
Confidence 999999999953 455556668999999999999988999998 775 44543 3455543
No 322
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.91 E-value=1.9e-24 Score=223.29 Aligned_cols=164 Identities=10% Similarity=0.158 Sum_probs=123.1
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCC-------eEEEEcCCcc-cccC--
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK-------RVVIVDTSNE-IGGD-- 166 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~-------~i~~v~~~~e-i~~~-- 166 (337)
+++++++|+.... ++++++.+.+|++++|+|||||||||||++|+|+++|+.+. .+.|+++... +...
T Consensus 322 ~~~l~~~~~~~~i--l~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~y~~q~~~~l~~~~t 399 (635)
T PRK11147 322 MENVNYQIDGKQL--VKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHCGTKLEVAYFDQHRAELDPEKT 399 (635)
T ss_pred EeeeEEEECCeEE--EcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCCcEEEEEeCcccccCCCCC
Confidence 6789999976544 99999999999999999999999999999999999887431 3556655321 1100
Q ss_pred ------C---CC--c--ccc-------ccc-----chhccCCCcchhHHHHHHHHHhhCCcEEEEcCCCCHHHHHH---H
Q 019702 167 ------G---DI--P--HSA-------IGT-----ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA---C 218 (337)
Q Consensus 167 ------~---~~--~--~~~-------~~~-----~~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~~ld~~~---l 218 (337)
. .. . ... ++. .+.+..+|+||+||++||++++.+|++|||||||+++|... +
T Consensus 400 v~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l 479 (635)
T PRK11147 400 VMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELL 479 (635)
T ss_pred HHHHHHhhcccccccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHH
Confidence 0 00 0 000 000 12345689999999999999999999999999999999643 3
Q ss_pred HHHH-hcCCeEEEEEcCcchhHHhhchHHHHHhc-CceEEEe-cCHHHH
Q 019702 219 RSIA-ERGVMLIGTAHGEWLENIIKNPILSDLIG-GVDTVTL-GDEEAR 264 (337)
Q Consensus 219 ~~~~-~~G~tvi~t~H~~~~~~~~~d~v~~~ll~-~G~iv~~-g~~~~~ 264 (337)
..+. +.+.|||++||+.+++..+|++++ +++ +|++... |+.++.
T Consensus 480 ~~~l~~~~~tvi~vSHd~~~~~~~~d~i~--~l~~~g~i~~~~g~y~~y 526 (635)
T PRK11147 480 EELLDSYQGTVLLVSHDRQFVDNTVTECW--IFEGNGKIGRYVGGYHDA 526 (635)
T ss_pred HHHHHhCCCeEEEEECCHHHHHHhcCEEE--EEeCCCeEEEccCCHHHH
Confidence 3333 335699999999999999999999 886 7887654 666554
No 323
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.91 E-value=1.5e-24 Score=185.78 Aligned_cols=163 Identities=19% Similarity=0.268 Sum_probs=127.0
Q ss_pred cchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEcCCcccccC----------------CCCcccc
Q 019702 110 GHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGD----------------GDIPHSA 173 (337)
Q Consensus 110 ~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~~~~ei~~~----------------~~~~~~~ 173 (337)
.+++.++|.+++|+.++|+|.||||||||.++|+|.++|+ ++.+.+.++.-+++.. ..-|...
T Consensus 27 ~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PT-sG~il~n~~~L~~~Dy~~R~k~IRMiFQDpnts~NPRl~ 105 (267)
T COG4167 27 EAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPT-SGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRLR 105 (267)
T ss_pred hcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCC-CceEEECCccccccchHhhhhheeeeecCCccccChhhh
Confidence 5688999999999999999999999999999999999998 4555544433222110 0001111
Q ss_pred ccc------------------------chh-----------ccCCCcchhHHHHHHHHHhhCCcEEEEcCCCCHHHH---
Q 019702 174 IGT------------------------ARR-----------MQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEA--- 215 (337)
Q Consensus 174 ~~~------------------------~~~-----------~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~~ld~--- 215 (337)
++. .++ ...++.|||||+++||||..+|++||.||..+++|+
T Consensus 106 iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVaLARALIL~P~iIIaDeAl~~LD~smr 185 (267)
T COG4167 106 IGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALARALILRPKIIIADEALASLDMSMR 185 (267)
T ss_pred hhhHhcchhhhcccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHHHHHHHHhcCCcEEEehhhhhhccHHHH
Confidence 110 011 233599999999999999999999999999999995
Q ss_pred ----HHHHHHHh-cCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHhhhHHHHhh
Q 019702 216 ----HACRSIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARRCQKSILER 275 (337)
Q Consensus 216 ----~~l~~~~~-~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~~~~~~~~~ 275 (337)
.++.++.+ .|++-|+++.+......++|.++ +|+.|++|+.|++.+++.++...+..+
T Consensus 186 sQl~NL~LeLQek~GiSyiYV~QhlG~iKHi~D~vi--VM~EG~vvE~G~t~~v~a~P~~~~TkR 248 (267)
T COG4167 186 SQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVL--VMHEGEVVERGSTADVLASPLHELTKR 248 (267)
T ss_pred HHHHHHHHHHHHHhCceEEEEechhhHhhhhcccEE--EEecCceeecCChhhhhcCCccHHHHH
Confidence 34455654 49999999999999999999999 999999999999999998876655443
No 324
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.91 E-value=6.3e-25 Score=221.19 Aligned_cols=153 Identities=17% Similarity=0.147 Sum_probs=118.0
Q ss_pred chhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCC-------------------CeEEEEcCCcc---cccC--
Q 019702 111 HIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ-------------------KRVVIVDTSNE---IGGD-- 166 (337)
Q Consensus 111 ~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~-------------------~~i~~v~~~~e---i~~~-- 166 (337)
.++++++.+.+|++++|+||||||||||+++|+|+++|+.+ .++.|+++... +...
T Consensus 267 ~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~~t 346 (501)
T PRK10762 267 GVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGMS 346 (501)
T ss_pred CcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCCCc
Confidence 37899999999999999999999999999999999987621 12445544321 1000
Q ss_pred -------C---C-------Ccc-c---c-------ccc-----chhccCCCcchhHHHHHHHHHhhCCcEEEEcCCCCHH
Q 019702 167 -------G---D-------IPH-S---A-------IGT-----ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEA 213 (337)
Q Consensus 167 -------~---~-------~~~-~---~-------~~~-----~~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~~l 213 (337)
. . ... . . ++. .+....+|+||+||++||+|++.+|++|||||||+++
T Consensus 347 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~al~~~p~lllLDEPt~~L 426 (501)
T PRK10762 347 VKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGV 426 (501)
T ss_pred HHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCC
Confidence 0 0 000 0 0 000 1223457999999999999999999999999999999
Q ss_pred HH-------HHHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHH
Q 019702 214 EA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARA 265 (337)
Q Consensus 214 d~-------~~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~ 265 (337)
|. +.+.++.++|.|||++||+.+++..+||+++ ++++|+++..++++++.
T Consensus 427 D~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v~--~l~~G~i~~~~~~~~~~ 483 (501)
T PRK10762 427 DVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRIL--VMHEGRISGEFTREQAT 483 (501)
T ss_pred CHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEE--EEECCEEEEEeccccCC
Confidence 94 4566666679999999999999999999999 99999999998887653
No 325
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.91 E-value=1e-23 Score=189.72 Aligned_cols=213 Identities=18% Similarity=0.231 Sum_probs=169.4
Q ss_pred CCCeeEEEEecCCccEEEEeCccCceeccCCCCCHHHHHHHHHHH------hccC----CCcceEecCc-eeEEEEEeeC
Q 019702 25 RGQLLEVILDLGRLPEARYLGEFGGKYLRSTEVSVEELEYAQSAV------GEFG----GDNRAGIEGT-LHRISAIRSR 93 (337)
Q Consensus 25 ~~~~~ei~l~~g~~~~~~~~g~~~~~~~~~~~~t~~~l~~~~~~~------~~~~----~~~~~~~~g~-~~rv~~~~~~ 93 (337)
..++||+.+..|.||.++++|++. ++...|+|.++...++..+ ..|. ..+.+...+. |||||+|+++
T Consensus 16 ~~~aSDlfIt~g~Ppsmkv~g~~t--pi~q~pLt~eq~~~i~~~iM~~~q~~eF~~~~EcNfai~~~~~gRfRvnAf~qr 93 (375)
T COG5008 16 EQKASDLFITAGFPPSMKVDGKLT--PITQEPLTGEQTMAIAFSIMSAKQREEFEETHECNFAISARDIGRFRVNAFYQR 93 (375)
T ss_pred hcCCcceEEEcCCCcceeecCcee--ecCCCCCCHHHHHHHHHHHhhHHHHHHHHhcccceEEEEcCCCceEEeehhhhc
Confidence 367999999999999999999875 8889999999988766443 2342 2444455444 8999999999
Q ss_pred CCcEeeEEEEECCcccc------chhhhhhc-ccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEcCCcccccC
Q 019702 94 KGAIVGLTCRVGRAVSG------HIDMVYDL-LHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGD 166 (337)
Q Consensus 94 ~g~i~~l~~r~~~~~~~------~~~~l~~~-v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~~~~ei~~~ 166 (337)
+.. ++.+|.....++ .++.+... +.+.+.+.|+|++||||||.|.++.|+-+.++.++|++++++.|+...
T Consensus 94 ~~~--g~VlRrI~~~IPt~eeL~LPevlk~la~~kRGLviiVGaTGSGKSTtmAaMi~yRN~~s~gHIiTIEDPIEfih~ 171 (375)
T COG5008 94 GLA--GLVLRRIETKIPTFEELKLPEVLKDLALAKRGLVIIVGATGSGKSTTMAAMIGYRNKNSTGHIITIEDPIEFIHK 171 (375)
T ss_pred Ccc--hhhhhhhhccCCcHHhcCCcHHHHHhhcccCceEEEECCCCCCchhhHHHHhcccccCCCCceEEecChHHHHhc
Confidence 866 888887655553 33344333 567789999999999999999999999998888999999999987542
Q ss_pred CCCcccccccchhccCCCcchhHHHHHHHHHhhCCcEEEEcCCCCHHHHHHHHHHHhcCCeEEEEEcCcchhHHhhchHH
Q 019702 167 GDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRSIAERGVMLIGTAHGEWLENIIKNPIL 246 (337)
Q Consensus 167 ~~~~~~~~~~~~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~~ld~~~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~ 246 (337)
++..+ ..+.++.-......+++.-+|++.||||+++|+++.+.++....++++||.+++|.|+.+. ...-+|++
T Consensus 172 ---h~~CI--vTQREvGvDTesw~~AlkNtlRQapDvI~IGEvRsretMeyAi~fAeTGHLcmaTLHAN~a-nQaleRIi 245 (375)
T COG5008 172 ---HKRCI--VTQREVGVDTESWEVALKNTLRQAPDVILIGEVRSRETMEYAIQFAETGHLCMATLHANNA-NQALERII 245 (375)
T ss_pred ---cccee--EEeeeeccchHHHHHHHHHHHhcCCCeEEEeecccHhHHHHHHHHHhcCceEEEEeccCCc-hHHHHHHH
Confidence 11111 2344555567788899999999999999999999999999999999999999999999984 44556666
Q ss_pred H
Q 019702 247 S 247 (337)
Q Consensus 247 ~ 247 (337)
+
T Consensus 246 n 246 (375)
T COG5008 246 N 246 (375)
T ss_pred h
Confidence 4
No 326
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.91 E-value=2.2e-24 Score=220.53 Aligned_cols=167 Identities=14% Similarity=0.183 Sum_probs=125.2
Q ss_pred EeeEEEEECCcc-ccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCC------------------CeEEEE
Q 019702 97 IVGLTCRVGRAV-SGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ------------------KRVVIV 157 (337)
Q Consensus 97 i~~l~~r~~~~~-~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~------------------~~i~~v 157 (337)
+++++++|+... ...++++++.+++|+.++|+|+||||||||++.|+|++.|..| ..+.++
T Consensus 340 ~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~~ 419 (576)
T TIGR02204 340 FEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALV 419 (576)
T ss_pred EEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHhceEE
Confidence 678999997432 2359999999999999999999999999999999999998732 124445
Q ss_pred cCCcccccC----------CCCccccc-------cc---------------chhccCCCcchhHHHHHHHHHhhCCcEEE
Q 019702 158 DTSNEIGGD----------GDIPHSAI-------GT---------------ARRMQVPEPSLQHKVMIEAVENHMPEVII 205 (337)
Q Consensus 158 ~~~~ei~~~----------~~~~~~~~-------~~---------------~~~~~~~S~g~k~r~~ia~al~~~P~vli 205 (337)
++.+.+... .......+ +. ......+||||+||+++|||+..+|++|+
T Consensus 420 ~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~~~ili 499 (576)
T TIGR02204 420 PQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILL 499 (576)
T ss_pred ccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHhCCCeEE
Confidence 444322110 00000000 00 01123479999999999999999999999
Q ss_pred EcCCCCHHHHHH-------HHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHh
Q 019702 206 VDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (337)
Q Consensus 206 lDEp~~~ld~~~-------l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~ 267 (337)
+||||+++|.+. +..+ .++.|+|++||+.+.. ..+|+++ .+++|++++.|+++++...
T Consensus 500 lDEpts~lD~~~~~~i~~~l~~~-~~~~t~IiitH~~~~~-~~~d~vi--~l~~g~~~~~g~~~~l~~~ 564 (576)
T TIGR02204 500 LDEATSALDAESEQLVQQALETL-MKGRTTLIIAHRLATV-LKADRIV--VMDQGRIVAQGTHAELIAK 564 (576)
T ss_pred EeCcccccCHHHHHHHHHHHHHH-hCCCEEEEEecchHHH-HhCCEEE--EEECCEEEeeecHHHHHHc
Confidence 999999999532 3333 3579999999999866 5699999 9999999999999987653
No 327
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.91 E-value=4.6e-25 Score=190.68 Aligned_cols=164 Identities=15% Similarity=0.187 Sum_probs=127.9
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEcCCccccc-----------
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGG----------- 165 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~~~~ei~~----------- 165 (337)
+.+++++|+.... +++++|.+.+|+.-+|+||||+||||++-.|+|..+|+ .+.+.+-.+ .++..
T Consensus 8 ~~~vsVsF~GF~A--ln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~-~G~v~f~g~-~dl~~~~e~~IAr~GI 83 (249)
T COG4674 8 LDGVSVSFGGFKA--LNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQ-EGEVLFDGD-TDLTKLPEHRIARAGI 83 (249)
T ss_pred EeceEEEEcceee--eeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCC-cceEEEcCc-hhhccCCHHHHHHhcc
Confidence 6689999998876 99999999999999999999999999999999999987 455544331 11110
Q ss_pred --CCCCc---------cc---------ccc----------------c-----------chhccCCCcchhHHHHHHHHHh
Q 019702 166 --DGDIP---------HS---------AIG----------------T-----------ARRMQVPEPSLQHKVMIEAVEN 198 (337)
Q Consensus 166 --~~~~~---------~~---------~~~----------------~-----------~~~~~~~S~g~k~r~~ia~al~ 198 (337)
....| ++ .+. . ......+|.||||++.|...++
T Consensus 84 GRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQwLEIGMll~ 163 (249)
T COG4674 84 GRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQWLEIGMLLA 163 (249)
T ss_pred CccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhhhhhhheeec
Confidence 00000 00 000 0 0223356999999999999999
Q ss_pred hCCcEEEEcCCCCHHH-------HHHHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHh
Q 019702 199 HMPEVIIVDEIGTEAE-------AHACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (337)
Q Consensus 199 ~~P~vlilDEp~~~ld-------~~~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~ 267 (337)
++|++|++|||.++.. .++++.++ ..++|+++.|||.++..++++|. +|+.|++.+.|+.+++-++
T Consensus 164 Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la-~~hsilVVEHDM~Fvr~~A~~VT--Vlh~G~VL~EGsld~v~~d 236 (249)
T COG4674 164 QDPKLLLLDEPVAGMTDAETEKTAELLKSLA-GKHSILVVEHDMGFVREIADKVT--VLHEGSVLAEGSLDEVQND 236 (249)
T ss_pred cCCcEEEecCccCCCcHHHHHHHHHHHHHHh-cCceEEEEeccHHHHHHhhheeE--EEeccceeecccHHHhhcC
Confidence 9999999999998654 24455554 46899999999999999999999 9999999999999998765
No 328
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.91 E-value=2.8e-24 Score=190.58 Aligned_cols=140 Identities=14% Similarity=0.133 Sum_probs=99.8
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEE---------------cCCc
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIV---------------DTSN 161 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v---------------~~~~ 161 (337)
+++++++|..... .+ +++.+++|++++|+|+||||||||+++|+|+++|+. +.+.+- .+..
T Consensus 4 ~~~l~~~~~~~~l--~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~-G~i~~~g~~i~~~~~~~~~~~~~~~ 79 (195)
T PRK13541 4 LHQLQFNIEQKNL--FD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSS-GNIYYKNCNINNIAKPYCTYIGHNL 79 (195)
T ss_pred EEEeeEEECCcEE--EE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCC-cEEEECCcccChhhhhhEEeccCCc
Confidence 5689999976432 54 999999999999999999999999999999998873 444322 1111
Q ss_pred ccccCCCCccc------------cccc-----------chhccCCCcchhHHHHHHHHHhhCCcEEEEcCCCCHHHHH--
Q 019702 162 EIGGDGDIPHS------------AIGT-----------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAH-- 216 (337)
Q Consensus 162 ei~~~~~~~~~------------~~~~-----------~~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~~ld~~-- 216 (337)
.+.+...+.++ .+.. .+....+|+||+||+++|+|++.+|+++++|||++++|..
T Consensus 80 ~~~~~~tv~~~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD~~~~ 159 (195)
T PRK13541 80 GLKLEMTVFENLKFWSEIYNSAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENR 159 (195)
T ss_pred CCCccCCHHHHHHHHHHhcccHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence 11000000000 0000 0223457999999999999999999999999999999953
Q ss_pred -----HHHHHHhcCCeEEEEEcCcchhHH
Q 019702 217 -----ACRSIAERGVMLIGTAHGEWLENI 240 (337)
Q Consensus 217 -----~l~~~~~~G~tvi~t~H~~~~~~~ 240 (337)
.+....+.|.|+|++||+.+.+..
T Consensus 160 ~~l~~~l~~~~~~~~tiii~sh~~~~i~~ 188 (195)
T PRK13541 160 DLLNNLIVMKANSGGIVLLSSHLESSIKS 188 (195)
T ss_pred HHHHHHHHHHHhCCCEEEEEeCCccccch
Confidence 233334568999999999986643
No 329
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.91 E-value=2.1e-24 Score=216.80 Aligned_cols=158 Identities=15% Similarity=0.149 Sum_probs=116.5
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCe--------------------EEE
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKR--------------------VVI 156 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~--------------------i~~ 156 (337)
+++++++|+.... ++++++.+.+|++++|+||||||||||+++|+|++++...+. +.+
T Consensus 263 ~~~l~~~~~~~~i--l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 340 (490)
T PRK10938 263 LNNGVVSYNDRPI--LHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKHIGY 340 (490)
T ss_pred EeceEEEECCeeE--EeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHhhceE
Confidence 6789999976544 999999999999999999999999999999999876411222 444
Q ss_pred EcCCcccccC-----------C-----CC----cc---cc-------ccc-----chhccCCCcchhHHHHHHHHHhhCC
Q 019702 157 VDTSNEIGGD-----------G-----DI----PH---SA-------IGT-----ARRMQVPEPSLQHKVMIEAVENHMP 201 (337)
Q Consensus 157 v~~~~ei~~~-----------~-----~~----~~---~~-------~~~-----~~~~~~~S~g~k~r~~ia~al~~~P 201 (337)
+.+....... . .. .. .. ++. .+....+|+||+||++||+|++.+|
T Consensus 341 v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p 420 (490)
T PRK10938 341 VSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRALVKHP 420 (490)
T ss_pred ECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHHHHHHHHhcCC
Confidence 4332111000 0 00 00 00 000 0123457999999999999999999
Q ss_pred cEEEEcCCCCHHHH-------HHHHHHHhcC-CeEEEEEcCcchhHH-hhchHHHHHhcCceEEEe
Q 019702 202 EVIIVDEIGTEAEA-------HACRSIAERG-VMLIGTAHGEWLENI-IKNPILSDLIGGVDTVTL 258 (337)
Q Consensus 202 ~vlilDEp~~~ld~-------~~l~~~~~~G-~tvi~t~H~~~~~~~-~~d~v~~~ll~~G~iv~~ 258 (337)
++||+||||+++|. +.+.+++++| .|||++||+.+++.. +||+++ +|++|+++..
T Consensus 421 ~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~--~l~~G~i~~~ 484 (490)
T PRK10938 421 TLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLE--FVPDGDIYRY 484 (490)
T ss_pred CEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeEE--EecCCceEEe
Confidence 99999999999995 3455566665 479999999998876 699999 9999998765
No 330
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.91 E-value=2.2e-24 Score=190.40 Aligned_cols=126 Identities=17% Similarity=0.255 Sum_probs=92.4
Q ss_pred chhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeE---------------------EEEcCCcc--cccC-
Q 019702 111 HIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRV---------------------VIVDTSNE--IGGD- 166 (337)
Q Consensus 111 ~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i---------------------~~v~~~~e--i~~~- 166 (337)
.++++++.+.+|++++|+||||||||||+++|+|+++|+. +.| .++.+... +...
T Consensus 7 il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~-G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~t 85 (190)
T TIGR01166 7 VLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQS-GAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFAAD 85 (190)
T ss_pred eecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc-eeEEECCEEccccccchHHHHhhEEEEecChhhcccccc
Confidence 4899999999999999999999999999999999998863 333 33333221 1000
Q ss_pred -----------CCCccc----cc-------cc----chhccCCCcchhHHHHHHHHHhhCCcEEEEcCCCCHHHH-----
Q 019702 167 -----------GDIPHS----AI-------GT----ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEA----- 215 (337)
Q Consensus 167 -----------~~~~~~----~~-------~~----~~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~~ld~----- 215 (337)
...... .+ +. .+....+|+||+||+++|+|++.+|++||+||||+++|.
T Consensus 86 v~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~ 165 (190)
T TIGR01166 86 VDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQ 165 (190)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHH
Confidence 000000 00 00 022345699999999999999999999999999999995
Q ss_pred --HHHHHHHhcCCeEEEEEcCcch
Q 019702 216 --HACRSIAERGVMLIGTAHGEWL 237 (337)
Q Consensus 216 --~~l~~~~~~G~tvi~t~H~~~~ 237 (337)
+.+.+++++|.|||++||+.++
T Consensus 166 ~~~~l~~~~~~~~tili~sH~~~~ 189 (190)
T TIGR01166 166 MLAILRRLRAEGMTVVISTHDVDL 189 (190)
T ss_pred HHHHHHHHHHcCCEEEEEeecccc
Confidence 3455566678999999999875
No 331
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.91 E-value=2.9e-24 Score=207.93 Aligned_cols=159 Identities=19% Similarity=0.176 Sum_probs=123.2
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEcCCccc-----------c-
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEI-----------G- 164 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~~~~ei-----------~- 164 (337)
+.+++++|+.... .+++++.+.+|++.+|+|.||+|||||+++|.|+++|+. +.|.+-.+...+ +
T Consensus 7 ~~~itK~f~~~~A--nd~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~-GeI~v~G~~v~~~sP~dA~~~GIGM 83 (501)
T COG3845 7 MRGITKRFPGVVA--NDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDS-GEIRVDGKEVRIKSPRDAIRLGIGM 83 (501)
T ss_pred EeccEEEcCCEEe--cCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCc-ceEEECCEEeccCCHHHHHHcCCcE
Confidence 5589999996555 999999999999999999999999999999999999984 334322111111 0
Q ss_pred --------cCCCCccccc-------------------------------ccchhccCCCcchhHHHHHHHHHhhCCcEEE
Q 019702 165 --------GDGDIPHSAI-------------------------------GTARRMQVPEPSLQHKVMIEAVENHMPEVII 205 (337)
Q Consensus 165 --------~~~~~~~~~~-------------------------------~~~~~~~~~S~g~k~r~~ia~al~~~P~vli 205 (337)
....+.++.+ .....+..+|-|++||+.|-.+|..+|++||
T Consensus 84 VhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr~a~iLI 163 (501)
T COG3845 84 VHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGARLLI 163 (501)
T ss_pred EeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHhcCCCEEE
Confidence 0000001100 0012334569999999999999999999999
Q ss_pred EcCCCCHHH-------HHHHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecC
Q 019702 206 VDEIGTEAE-------AHACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGD 260 (337)
Q Consensus 206 lDEp~~~ld-------~~~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~ 260 (337)
|||||+-+. ++.++.++++|+|||++||-++++..+||++. ++.+|+.+..-+
T Consensus 164 LDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvT--VLR~Gkvvgt~~ 223 (501)
T COG3845 164 LDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVT--VLRRGKVVGTVD 223 (501)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeE--EEeCCeEEeeec
Confidence 999999766 35677788999999999999999999999999 999999876655
No 332
>PLN03073 ABC transporter F family; Provisional
Probab=99.90 E-value=8.8e-24 Score=219.90 Aligned_cols=164 Identities=19% Similarity=0.223 Sum_probs=123.8
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccc---cccCCCeEEEEcCCcc---c-------
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVL---SDEFQKRVVIVDTSNE---I------- 163 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll---~~~~~~~i~~v~~~~e---i------- 163 (337)
+++++++|+... .++++++.+.+|+.++|+|||||||||||++|+|.. .|. .+.|.++++... .
T Consensus 180 i~nls~~y~~~~--ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~-~g~I~~~~Q~~~g~~~t~~~~v~ 256 (718)
T PLN03073 180 MENFSISVGGRD--LIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPK-NCQILHVEQEVVGDDTTALQCVL 256 (718)
T ss_pred EceEEEEeCCCE--EEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCC-CCEEEEEeccCCCCCCCHHHHHH
Confidence 668999997655 499999999999999999999999999999999863 233 567777665310 0
Q ss_pred --------------ccCC--------------------CCcccc------------------------------cc----
Q 019702 164 --------------GGDG--------------------DIPHSA------------------------------IG---- 175 (337)
Q Consensus 164 --------------~~~~--------------------~~~~~~------------------------------~~---- 175 (337)
.... ..+... ++
T Consensus 257 ~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~lgl~~~ 336 (718)
T PLN03073 257 NTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGLSFTPE 336 (718)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHCCCChH
Confidence 0000 000000 00
Q ss_pred -cchhccCCCcchhHHHHHHHHHhhCCcEEEEcCCCCHHHHHHHH----HHHhcCCeEEEEEcCcchhHHhhchHHHHHh
Q 019702 176 -TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR----SIAERGVMLIGTAHGEWLENIIKNPILSDLI 250 (337)
Q Consensus 176 -~~~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~~ld~~~l~----~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll 250 (337)
..+....+|+||+||++||+||+.+|++|||||||+++|..... .+.+.|.|||++||+.+++..+|++++ .+
T Consensus 337 ~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~tviivsHd~~~l~~~~d~i~--~l 414 (718)
T PLN03073 337 MQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKWPKTFIVVSHAREFLNTVVTDIL--HL 414 (718)
T ss_pred HHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEE--EE
Confidence 01234568999999999999999999999999999999965432 234458899999999999999999999 99
Q ss_pred cCceEE-EecCHHHHH
Q 019702 251 GGVDTV-TLGDEEARA 265 (337)
Q Consensus 251 ~~G~iv-~~g~~~~~~ 265 (337)
++|+++ +.|+.+...
T Consensus 415 ~~g~i~~~~g~~~~~~ 430 (718)
T PLN03073 415 HGQKLVTYKGDYDTFE 430 (718)
T ss_pred ECCEEEEeCCCHHHHH
Confidence 999986 567665543
No 333
>PLN03232 ABC transporter C family member; Provisional
Probab=99.90 E-value=7.6e-24 Score=235.97 Aligned_cols=168 Identities=11% Similarity=0.126 Sum_probs=127.7
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCC------------------CeEEEEc
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ------------------KRVVIVD 158 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~------------------~~i~~v~ 158 (337)
++|++++|.+.....++++++.+++|+.++|+|+||||||||+++|.|++.|+.| +++.+++
T Consensus 1237 f~nVsf~Y~~~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVp 1316 (1495)
T PLN03232 1237 FEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIP 1316 (1495)
T ss_pred EEEEEEEECCCCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEEC
Confidence 6799999965444469999999999999999999999999999999999998732 2345555
Q ss_pred CCcccccC---------CCCccccccc-c---------------------hhccCCCcchhHHHHHHHHHhhCCcEEEEc
Q 019702 159 TSNEIGGD---------GDIPHSAIGT-A---------------------RRMQVPEPSLQHKVMIEAVENHMPEVIIVD 207 (337)
Q Consensus 159 ~~~ei~~~---------~~~~~~~~~~-~---------------------~~~~~~S~g~k~r~~ia~al~~~P~vlilD 207 (337)
|.+.+... .......+.. + ..-..+|+|||||++||||+..+|+|||||
T Consensus 1317 Qdp~LF~gTIr~NL~~~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ILILD 1396 (1495)
T PLN03232 1317 QSPVLFSGTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLD 1396 (1495)
T ss_pred CCCeeeCccHHHHcCCCCCCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 54432210 0000000000 0 111247999999999999999999999999
Q ss_pred CCCCHHHHHH---HHH-HH--hcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHh
Q 019702 208 EIGTEAEAHA---CRS-IA--ERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (337)
Q Consensus 208 Ep~~~ld~~~---l~~-~~--~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~ 267 (337)
|||+++|.+. +.+ +. .++.|+|+++|.++.+. -||+++ +|++|++++.|+|+++++.
T Consensus 1397 EATSaLD~~Te~~Iq~~L~~~~~~~TvI~IAHRl~ti~-~~DrIl--VL~~G~ivE~Gt~~eLl~~ 1459 (1495)
T PLN03232 1397 EATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTII-DCDKIL--VLSSGQVLEYDSPQELLSR 1459 (1495)
T ss_pred CCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHH-hCCEEE--EEECCEEEEECCHHHHHhC
Confidence 9999999532 222 22 24799999999998775 599999 9999999999999998864
No 334
>PLN03130 ABC transporter C family member; Provisional
Probab=99.90 E-value=7.4e-24 Score=236.67 Aligned_cols=167 Identities=13% Similarity=0.127 Sum_probs=128.0
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCC------------------CeEEEEc
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ------------------KRVVIVD 158 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~------------------~~i~~v~ 158 (337)
++|++++|.+....+++++++.+++|+.++|+|+||||||||+++|.|++.|+.| .++.+++
T Consensus 1240 f~nVsf~Y~~~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVp 1319 (1622)
T PLN03130 1240 FEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIP 1319 (1622)
T ss_pred EEEEEEEeCCCCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccEEEC
Confidence 6799999975544469999999999999999999999999999999999998732 2345555
Q ss_pred CCcccccCCCCcc----------ccccc-c---------------------hhccCCCcchhHHHHHHHHHhhCCcEEEE
Q 019702 159 TSNEIGGDGDIPH----------SAIGT-A---------------------RRMQVPEPSLQHKVMIEAVENHMPEVIIV 206 (337)
Q Consensus 159 ~~~ei~~~~~~~~----------~~~~~-~---------------------~~~~~~S~g~k~r~~ia~al~~~P~vlil 206 (337)
|.+.+.. +.+.. ..+.. + ..-..+|+|||||++||||+..+|+||||
T Consensus 1320 Qdp~LF~-GTIreNLd~~~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ILIL 1398 (1622)
T PLN03130 1320 QAPVLFS-GTVRFNLDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVL 1398 (1622)
T ss_pred CCCcccc-ccHHHHhCcCCCCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 5443311 11100 00000 0 11124799999999999999999999999
Q ss_pred cCCCCHHHHHH---HHH-HH--hcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHh
Q 019702 207 DEIGTEAEAHA---CRS-IA--ERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (337)
Q Consensus 207 DEp~~~ld~~~---l~~-~~--~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~ 267 (337)
||||+++|.+. +.+ +. .++.|+|+++|.++.+. -||+++ +|++|++++.|+|++++..
T Consensus 1399 DEATSaLD~~Te~~Iq~~I~~~~~~~TvI~IAHRL~tI~-~~DrIl--VLd~G~IvE~Gt~~eLl~~ 1462 (1622)
T PLN03130 1399 DEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTII-DCDRIL--VLDAGRVVEFDTPENLLSN 1462 (1622)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEeCChHHHH-hCCEEE--EEECCEEEEeCCHHHHHhC
Confidence 99999999532 222 22 24799999999999775 599999 9999999999999999864
No 335
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=99.90 E-value=3.8e-22 Score=192.47 Aligned_cols=223 Identities=21% Similarity=0.156 Sum_probs=158.4
Q ss_pred CHHHHHHHhcccCCCCeeEEEEecCCccEEEEeCccCceeccCCCCCHHHHHHHHHHHhc------cCC----Cc-----
Q 019702 12 PSDLRDRLQNDSKRGQLLEVILDLGRLPEARYLGEFGGKYLRSTEVSVEELEYAQSAVGE------FGG----DN----- 76 (337)
Q Consensus 12 p~~~~~~l~~~~~~~~~~ei~l~~g~~~~~~~~g~~~~~~~~~~~~t~~~l~~~~~~~~~------~~~----~~----- 76 (337)
|..+.+.|.... +.++|||||..|.||++|.+|++. +....++++++++.++..+.. +.. |.
T Consensus 9 ~~~~~~ll~~~~-~~~~SDI~l~~g~~v~ir~~G~l~--~~~~~~l~~~~~~~~i~~i~~~~~~~~l~~~~~vd~a~~~~ 85 (372)
T TIGR02525 9 ADTLRRFFVHCS-RHEVSDIHLQGGSPIVVERHGRQV--PASSFPLDNLELERLVDEVFGPEIKPTVKSGAPVDRAIQLR 85 (372)
T ss_pred HHHHHHHHHHHh-hCCCceEEEcCCCCeEEEECCeEE--ECCCCCCCHHHHHHHHHHHhHHHHHHHHhccCCcccceecc
Confidence 456666665444 478999999999999999999864 666678999999988876521 111 32
Q ss_pred -----ceEec-C--ceeEEEEEee-----CCCcEeeEEEEECCccccchhhhh-------hcccCCCEEEEEcCCCCcHH
Q 019702 77 -----RAGIE-G--TLHRISAIRS-----RKGAIVGLTCRVGRAVSGHIDMVY-------DLLHYGKSILFVGRPGVGKT 136 (337)
Q Consensus 77 -----~~~~~-g--~~~rv~~~~~-----~~g~i~~l~~r~~~~~~~~~~~l~-------~~v~~g~~v~IiGpnGsGKT 136 (337)
+++++ | .+||+|.+.. ..++ .+++|........+..+. ..+.++..++|+||+|||||
T Consensus 86 ~~~~g~~~l~~g~~~rfR~n~~~~~~~~~~~~~--~i~iR~~~~~~~~l~~lgl~~~~~~~l~~~~GlilI~G~TGSGKT 163 (372)
T TIGR02525 86 GDENGRYGLGRGERVRFRCNFIQATIGKLETAI--SLTLRVIPSDIPDLKQMGIEPDLFNSLLPAAGLGLICGETGSGKS 163 (372)
T ss_pred cccccceeccCCceEEEEEEEecccccccCCCc--eEEEEeCCCcCCCHHHcCCCHHHHHHHHhcCCEEEEECCCCCCHH
Confidence 33333 2 3789998763 3455 899998755542222222 22456778999999999999
Q ss_pred HHHHHHHcccccc-CCCeEEEEcCCcccccCCCCcccccccchhccCCCcchhHHHHHHHHHhhCCcEEEEcCCCCHHHH
Q 019702 137 TVMREIARVLSDE-FQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEA 215 (337)
Q Consensus 137 TLL~~l~gll~~~-~~~~i~~v~~~~ei~~~~~~~~~~~~~~~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~~ld~ 215 (337)
|+|++|.+.+... ...++++++++.|+..... +.+....+.++........-++..+|+++||+|+++|.+..+++
T Consensus 164 T~l~al~~~i~~~~~~~~IvtiEdp~E~~~~~~---~~~~~~~q~evg~~~~~~~~~l~~aLR~~PD~I~vGEiRd~et~ 240 (372)
T TIGR02525 164 TLAASIYQHCGETYPDRKIVTYEDPIEYILGSP---DDLLPPAQSQIGRDVDSFANGIRLALRRAPKIIGVGEIRDLETF 240 (372)
T ss_pred HHHHHHHHHHHhcCCCceEEEEecCchhccCCC---ceeecccccccCCCccCHHHHHHHhhccCCCEEeeCCCCCHHHH
Confidence 9999999988532 1478999999988754210 11110112222223334567889999999999999999999999
Q ss_pred HHHHHHHhcCCeEEEEEcCcchhHHhh
Q 019702 216 HACRSIAERGVMLIGTAHGEWLENIIK 242 (337)
Q Consensus 216 ~~l~~~~~~G~tvi~t~H~~~~~~~~~ 242 (337)
+++.+++++||.++.|.|..+..+.+.
T Consensus 241 ~~al~aa~TGH~v~tTlHa~s~~~ai~ 267 (372)
T TIGR02525 241 QAAVLAGQSGHFCLGTLHVKSPGEAIS 267 (372)
T ss_pred HHHHHHHhcCCcEEEeeCCCCHHHHHH
Confidence 888888999999999999998665443
No 336
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.90 E-value=8.1e-24 Score=219.00 Aligned_cols=166 Identities=13% Similarity=0.114 Sum_probs=125.8
Q ss_pred EeeEEEEECCc--cccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCC----------------------C
Q 019702 97 IVGLTCRVGRA--VSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ----------------------K 152 (337)
Q Consensus 97 i~~l~~r~~~~--~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~----------------------~ 152 (337)
+++++++|... ....++++++.+++|++++|+||||||||||+++|+|+++|+.+ .
T Consensus 7 ~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 86 (648)
T PRK10535 7 LKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQLRRE 86 (648)
T ss_pred EeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHHHhc
Confidence 67999999642 12359999999999999999999999999999999999988632 1
Q ss_pred eEEEEcCCcccccCCC-------------Ccccc----c-------cc----chhccCCCcchhHHHHHHHHHhhCCcEE
Q 019702 153 RVVIVDTSNEIGGDGD-------------IPHSA----I-------GT----ARRMQVPEPSLQHKVMIEAVENHMPEVI 204 (337)
Q Consensus 153 ~i~~v~~~~ei~~~~~-------------~~~~~----~-------~~----~~~~~~~S~g~k~r~~ia~al~~~P~vl 204 (337)
.+.++.+...+..... .+... . +. ......+|+||+||++||+|++.+|++|
T Consensus 87 ~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAraL~~~P~lL 166 (648)
T PRK10535 87 HFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVI 166 (648)
T ss_pred cEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 2344443322110000 00000 0 00 0223457999999999999999999999
Q ss_pred EEcCCCCHHHH-------HHHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHH
Q 019702 205 IVDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARA 265 (337)
Q Consensus 205 ilDEp~~~ld~-------~~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~ 265 (337)
++|||++++|. +.+.++.++|.|+|++||+.+... .||+++ ++++|++++.|++++..
T Consensus 167 llDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~~~~-~~d~i~--~l~~G~i~~~g~~~~~~ 231 (648)
T PRK10535 167 LADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAA-QAERVI--EIRDGEIVRNPPAQEKV 231 (648)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHH-hCCEEE--EEECCEEEeecCccccc
Confidence 99999999995 345555667999999999999875 699999 99999999999998775
No 337
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.89 E-value=1.5e-23 Score=232.24 Aligned_cols=166 Identities=16% Similarity=0.125 Sum_probs=123.6
Q ss_pred EeeEEEEECCc-cccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHcccccc--------------------------
Q 019702 97 IVGLTCRVGRA-VSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDE-------------------------- 149 (337)
Q Consensus 97 i~~l~~r~~~~-~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~-------------------------- 149 (337)
+++++|+|+.. ....++++++.+++|+.++|+||+||||||+++.|.|++.|+
T Consensus 1168 f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1247 (1466)
T PTZ00265 1168 IMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEE 1247 (1466)
T ss_pred EEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccccccccccccccccc
Confidence 67999999742 224699999999999999999999999999999999999982
Q ss_pred ---------------------------CCC-------------------eEEEEcCCcccccCCCCcc-----------c
Q 019702 150 ---------------------------FQK-------------------RVVIVDTSNEIGGDGDIPH-----------S 172 (337)
Q Consensus 150 ---------------------------~~~-------------------~i~~v~~~~ei~~~~~~~~-----------~ 172 (337)
..+ .+.+++|.+.+.. +.+.+ .
T Consensus 1248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~-gTIreNI~~g~~~at~e 1326 (1466)
T PTZ00265 1248 QNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFN-MSIYENIKFGKEDATRE 1326 (1466)
T ss_pred cccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCcccc-ccHHHHHhcCCCCCCHH
Confidence 122 2334444332211 11100 0
Q ss_pred cccc-c---------------------hhccCCCcchhHHHHHHHHHhhCCcEEEEcCCCCHHHHH-------HHHHHH-
Q 019702 173 AIGT-A---------------------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAH-------ACRSIA- 222 (337)
Q Consensus 173 ~~~~-~---------------------~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~~ld~~-------~l~~~~- 222 (337)
.+.. + .+-..+|||||||++|||||..+|+||||||||+++|.+ ++..+.
T Consensus 1327 eI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~ 1406 (1466)
T PTZ00265 1327 DVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKD 1406 (1466)
T ss_pred HHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhc
Confidence 0000 0 112247999999999999999999999999999999952 344443
Q ss_pred hcCCeEEEEEcCcchhHHhhchHHHHHhcC----ceEE-EecCHHHHHH
Q 019702 223 ERGVMLIGTAHGEWLENIIKNPILSDLIGG----VDTV-TLGDEEARAR 266 (337)
Q Consensus 223 ~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~----G~iv-~~g~~~~~~~ 266 (337)
.++.|+|+++|.++.+ ..||+++ ++++ |+++ +.|+.++++.
T Consensus 1407 ~~~~TvIiIaHRlsti-~~aD~Iv--vl~~~~~~G~iv~e~Gth~eLl~ 1452 (1466)
T PTZ00265 1407 KADKTIITIAHRIASI-KRSDKIV--VFNNPDRTGSFVQAHGTHEELLS 1452 (1466)
T ss_pred cCCCEEEEEechHHHH-HhCCEEE--EEeCCCCCCCEEEEecCHHHHHh
Confidence 2589999999999876 4699999 8988 8855 7999999875
No 338
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.89 E-value=2.4e-23 Score=211.86 Aligned_cols=159 Identities=12% Similarity=0.140 Sum_probs=117.3
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCC------------------CeEEEEc
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ------------------KRVVIVD 158 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~------------------~~i~~v~ 158 (337)
+++++++|+... ..++++++.+++|+.++|+||||||||||++.|+|+++|+.| .++.+++
T Consensus 325 ~~~v~f~y~~~~-~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~ 403 (547)
T PRK10522 325 LRNVTFAYQDNG-FSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVF 403 (547)
T ss_pred EEEEEEEeCCCC-eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhheEEEe
Confidence 679999997432 259999999999999999999999999999999999988732 2334444
Q ss_pred CCcccccCCCCcc-------ccc---------ccc-h------hccCCCcchhHHHHHHHHHhhCCcEEEEcCCCCHHHH
Q 019702 159 TSNEIGGDGDIPH-------SAI---------GTA-R------RMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEA 215 (337)
Q Consensus 159 ~~~ei~~~~~~~~-------~~~---------~~~-~------~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~~ld~ 215 (337)
+...+... .+.+ ..+ ... . .-..+||||+||+++|||+..+|++||+||||+++|.
T Consensus 404 q~~~lf~~-ti~~n~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~ 482 (547)
T PRK10522 404 TDFHLFDQ-LLGPEGKPANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDP 482 (547)
T ss_pred cChhHHHH-hhccccCchHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCH
Confidence 43322110 0000 000 000 0 0135899999999999999999999999999999995
Q ss_pred HH-------HHHHH-hcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecC
Q 019702 216 HA-------CRSIA-ERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGD 260 (337)
Q Consensus 216 ~~-------l~~~~-~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~ 260 (337)
+. +.... +.|.|+|++||..+.. ..||+++ ++++|++++...
T Consensus 483 ~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~-~~~d~i~--~l~~G~i~e~~~ 532 (547)
T PRK10522 483 HFRREFYQVLLPLLQEMGKTIFAISHDDHYF-IHADRLL--EMRNGQLSELTG 532 (547)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEEechHHH-HhCCEEE--EEECCEEEEecC
Confidence 32 22222 2489999999999765 5799999 999999987733
No 339
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.89 E-value=2.9e-23 Score=211.55 Aligned_cols=157 Identities=11% Similarity=0.109 Sum_probs=115.3
Q ss_pred EeeEEEEECCc---cccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEE-----------------
Q 019702 97 IVGLTCRVGRA---VSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVI----------------- 156 (337)
Q Consensus 97 i~~l~~r~~~~---~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~----------------- 156 (337)
+++++++|+.. ....++++++.+++|+.++|+||||||||||++.|+|++.|+. +.|.+
T Consensus 340 ~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~-G~i~~~g~~i~~~~~~~~~~~i 418 (555)
T TIGR01194 340 LKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQE-GEILLDGAAVSADSRDDYRDLF 418 (555)
T ss_pred EEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCC-cEEEECCEECCCCCHHHHHhhC
Confidence 67999999753 1135899999999999999999999999999999999999873 44432
Q ss_pred --EcCCcccccCCCCccc--------ccc-cc----------------hhccCCCcchhHHHHHHHHHhhCCcEEEEcCC
Q 019702 157 --VDTSNEIGGDGDIPHS--------AIG-TA----------------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEI 209 (337)
Q Consensus 157 --v~~~~ei~~~~~~~~~--------~~~-~~----------------~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp 209 (337)
+.+...+. ...+..+ .+. .+ .....+||||+||++||||+..+|+++|+|||
T Consensus 419 ~~v~q~~~lf-~~ti~~n~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~~ililDE~ 497 (555)
T TIGR01194 419 SAIFADFHLF-DDLIGPDEGEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPILLFDEW 497 (555)
T ss_pred cEEccChhhh-hhhhhcccccchhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 22211110 0000000 000 00 01134899999999999999999999999999
Q ss_pred CCHHHHHH---H----H-HHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEe
Q 019702 210 GTEAEAHA---C----R-SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 258 (337)
Q Consensus 210 ~~~ld~~~---l----~-~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~ 258 (337)
|+++|.+. + . .+...|.|+|++||+.+.. ..||+++ ++++|++++.
T Consensus 498 ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~-~~~d~i~--~l~~G~i~~~ 551 (555)
T TIGR01194 498 AADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYF-ELADQII--KLAAGCIVKD 551 (555)
T ss_pred ccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHH-HhCCEEE--EEECCEEEEe
Confidence 99999532 2 1 2234689999999999865 5899999 9999998764
No 340
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.89 E-value=4.3e-23 Score=230.25 Aligned_cols=168 Identities=11% Similarity=0.125 Sum_probs=127.6
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCC------------------CeEEEEc
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ------------------KRVVIVD 158 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~------------------~~i~~v~ 158 (337)
+++++++|......+++++++.+++|+.++|+|+||||||||+++|.|++.|+.| .++.+++
T Consensus 1287 f~nVsf~Y~~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVp 1366 (1522)
T TIGR00957 1287 FRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIP 1366 (1522)
T ss_pred EEEEEEEeCCCCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCeEEC
Confidence 6799999976543469999999999999999999999999999999999998732 2344555
Q ss_pred CCcccccC---------CCCccccccc-c---------------------hhccCCCcchhHHHHHHHHHhhCCcEEEEc
Q 019702 159 TSNEIGGD---------GDIPHSAIGT-A---------------------RRMQVPEPSLQHKVMIEAVENHMPEVIIVD 207 (337)
Q Consensus 159 ~~~ei~~~---------~~~~~~~~~~-~---------------------~~~~~~S~g~k~r~~ia~al~~~P~vlilD 207 (337)
|.+.+... +......+.. + ..-..+|+|||||++||||+..+|+|||||
T Consensus 1367 Qdp~LF~gTIr~NLdp~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILiLD 1446 (1522)
T TIGR00957 1367 QDPVLFSGSLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLD 1446 (1522)
T ss_pred CCCcccCccHHHHcCcccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 54432210 0011110000 0 111247999999999999999999999999
Q ss_pred CCCCHHHHHH---HHH-HH--hcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHh
Q 019702 208 EIGTEAEAHA---CRS-IA--ERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (337)
Q Consensus 208 Ep~~~ld~~~---l~~-~~--~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~ 267 (337)
|||+++|.+. +.+ +. .++.|+|+++|..+.+. -+|+++ +|++|++++.|+|++++++
T Consensus 1447 EaTSalD~~Te~~Iq~~l~~~~~~~TvI~IAHRl~ti~-~~DrIl--Vld~G~IvE~G~~~eLl~~ 1509 (1522)
T TIGR00957 1447 EATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIM-DYTRVI--VLDKGEVAEFGAPSNLLQQ 1509 (1522)
T ss_pred CCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH-hCCEEE--EEECCEEEEECCHHHHHhC
Confidence 9999999532 222 22 24789999999998764 689999 9999999999999998864
No 341
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.89 E-value=2.5e-23 Score=230.52 Aligned_cols=153 Identities=16% Similarity=0.204 Sum_probs=113.0
Q ss_pred EeeEEEEECCcc-ccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEE-------------------
Q 019702 97 IVGLTCRVGRAV-SGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVI------------------- 156 (337)
Q Consensus 97 i~~l~~r~~~~~-~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~------------------- 156 (337)
+++++++|+... ...++++++.+++|+.++|+||||||||||+++|+|++.|+ .+.|.+
T Consensus 385 ~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~-~G~I~i~~g~~i~~~~~~~lr~~Ig 463 (1466)
T PTZ00265 385 FKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPT-EGDIIINDSHNLKDINLKWWRSKIG 463 (1466)
T ss_pred EEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCC-CCeEEEeCCcchhhCCHHHHHHhcc
Confidence 679999997532 23699999999999999999999999999999999999987 344443
Q ss_pred -EcCCcccccC-------CCCcc---------------------------------------------------------
Q 019702 157 -VDTSNEIGGD-------GDIPH--------------------------------------------------------- 171 (337)
Q Consensus 157 -v~~~~ei~~~-------~~~~~--------------------------------------------------------- 171 (337)
+.|...+... .+.+.
T Consensus 464 ~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 543 (1466)
T PTZ00265 464 VVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQT 543 (1466)
T ss_pred EecccccchhccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhccccccc
Confidence 2221111000 00000
Q ss_pred ---ccc-------cc---------------chhccCCCcchhHHHHHHHHHhhCCcEEEEcCCCCHHHH-------HHHH
Q 019702 172 ---SAI-------GT---------------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEA-------HACR 219 (337)
Q Consensus 172 ---~~~-------~~---------------~~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~~ld~-------~~l~ 219 (337)
..+ +. ......+|||||||++||||++.+|++|||||||+++|. +++.
T Consensus 544 ~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~~L~ 623 (1466)
T PTZ00265 544 IKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTIN 623 (1466)
T ss_pred CCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHH
Confidence 000 00 011234799999999999999999999999999999995 3455
Q ss_pred HHHh-cCCeEEEEEcCcchhHHhhchHHHHHhcCc
Q 019702 220 SIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGV 253 (337)
Q Consensus 220 ~~~~-~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G 253 (337)
++.+ .|.|+|+++|+++.+ ..||+++ +|++|
T Consensus 624 ~~~~~~g~TvIiIsHrls~i-~~aD~Ii--vl~~g 655 (1466)
T PTZ00265 624 NLKGNENRITIIIAHRLSTI-RYANTIF--VLSNR 655 (1466)
T ss_pred HHhhcCCCEEEEEeCCHHHH-HhCCEEE--EEeCC
Confidence 5554 589999999999977 5899999 88765
No 342
>PTZ00243 ABC transporter; Provisional
Probab=99.89 E-value=4.4e-23 Score=230.10 Aligned_cols=167 Identities=12% Similarity=0.118 Sum_probs=127.3
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCC------------------CeEEEEc
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ------------------KRVVIVD 158 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~------------------~~i~~v~ 158 (337)
++|++++|......+++++++.+++|+.++|+|+||||||||+++|.|++.|+.| ..+.+++
T Consensus 1311 f~nVsf~Y~~~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVp 1390 (1560)
T PTZ00243 1311 FEGVQMRYREGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIP 1390 (1560)
T ss_pred EEEEEEEeCCCCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEEC
Confidence 6799999976544469999999999999999999999999999999999998732 2345555
Q ss_pred CCcccccCCCCccc----------cccc-c---------------------hhccCCCcchhHHHHHHHHHhhC-CcEEE
Q 019702 159 TSNEIGGDGDIPHS----------AIGT-A---------------------RRMQVPEPSLQHKVMIEAVENHM-PEVII 205 (337)
Q Consensus 159 ~~~ei~~~~~~~~~----------~~~~-~---------------------~~~~~~S~g~k~r~~ia~al~~~-P~vli 205 (337)
|.+.+.. +.+..+ .+.. + ..-..+|+|||||++||||+..+ |+|||
T Consensus 1391 Qdp~LF~-gTIreNIdp~~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILl 1469 (1560)
T PTZ00243 1391 QDPVLFD-GTVRQNVDPFLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFIL 1469 (1560)
T ss_pred CCCcccc-ccHHHHhCcccCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEE
Confidence 5443321 111110 0000 0 11124799999999999999996 89999
Q ss_pred EcCCCCHHHHHH---HHH-HH--hcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHh
Q 019702 206 VDEIGTEAEAHA---CRS-IA--ERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (337)
Q Consensus 206 lDEp~~~ld~~~---l~~-~~--~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~ 267 (337)
|||||+++|.+. +.+ +. .++.|+|+++|.++.+ ..||+++ +|++|++++.|+|++++.+
T Consensus 1470 LDEATSaLD~~te~~Iq~~L~~~~~~~TvI~IAHRl~ti-~~~DrIl--VLd~G~VvE~Gt~~eLl~~ 1534 (1560)
T PTZ00243 1470 MDEATANIDPALDRQIQATVMSAFSAYTVITIAHRLHTV-AQYDKII--VMDHGAVAEMGSPRELVMN 1534 (1560)
T ss_pred EeCCCccCCHHHHHHHHHHHHHHCCCCEEEEEeccHHHH-HhCCEEE--EEECCEEEEECCHHHHHhC
Confidence 999999999532 222 22 2478999999999876 4699999 9999999999999999863
No 343
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.89 E-value=3.8e-23 Score=213.01 Aligned_cols=154 Identities=17% Similarity=0.209 Sum_probs=117.8
Q ss_pred chhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHcccccc--CCCe----------------EEEEcCCcccccCC-----
Q 019702 111 HIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDE--FQKR----------------VVIVDTSNEIGGDG----- 167 (337)
Q Consensus 111 ~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~--~~~~----------------i~~v~~~~ei~~~~----- 167 (337)
.++++++.+++|++++|+|||||||||||++|+|...+. ..+. +.++++...+....
T Consensus 40 iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lTV~e~ 119 (617)
T TIGR00955 40 LLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTVREH 119 (617)
T ss_pred cccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCcHHHH
Confidence 599999999999999999999999999999999998763 1222 34444332211100
Q ss_pred -------CCcc----cc-----------ccc----chhc------cCCCcchhHHHHHHHHHhhCCcEEEEcCCCCHHHH
Q 019702 168 -------DIPH----SA-----------IGT----ARRM------QVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEA 215 (337)
Q Consensus 168 -------~~~~----~~-----------~~~----~~~~------~~~S~g~k~r~~ia~al~~~P~vlilDEp~~~ld~ 215 (337)
..+. .. ++. ...+ .-+|+|||||++||+++..+|+++++||||+++|.
T Consensus 120 l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPtsgLD~ 199 (617)
T TIGR00955 120 LMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDS 199 (617)
T ss_pred HHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCcchhH
Confidence 0111 00 000 0112 24899999999999999999999999999999994
Q ss_pred -------HHHHHHHhcCCeEEEEEcCcc-hhHHhhchHHHHHhcCceEEEecCHHHHHH
Q 019702 216 -------HACRSIAERGVMLIGTAHGEW-LENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (337)
Q Consensus 216 -------~~l~~~~~~G~tvi~t~H~~~-~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~ 266 (337)
+.+++++++|.|+|+|+|+.+ .+...+|+++ ++++|+++..|+++++..
T Consensus 200 ~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~--ll~~G~~v~~G~~~~~~~ 256 (617)
T TIGR00955 200 FMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKII--LMAEGRVAYLGSPDQAVP 256 (617)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEE--EeeCCeEEEECCHHHHHH
Confidence 456666777999999999986 6678999999 999999999999998764
No 344
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.89 E-value=4.8e-23 Score=186.98 Aligned_cols=77 Identities=12% Similarity=0.118 Sum_probs=67.1
Q ss_pred ccCCCcchhHHHHHHHHHhhCC--cEEEEcCCCCHHHH-------HHHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHh
Q 019702 180 MQVPEPSLQHKVMIEAVENHMP--EVIIVDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLI 250 (337)
Q Consensus 180 ~~~~S~g~k~r~~ia~al~~~P--~vlilDEp~~~ld~-------~~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll 250 (337)
...+|+||+||+++|+|++.+| ++||+||||+++|. +.+.++++.|.|+|++||+++++ .+||+++ +|
T Consensus 135 ~~~LSgG~~qrv~laral~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~~~-~~~d~i~--~l 211 (226)
T cd03270 135 APTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDEDTI-RAADHVI--DI 211 (226)
T ss_pred cCcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHHHH-HhCCEEE--Ee
Confidence 4457999999999999999998 59999999999994 34555566799999999999987 4899999 99
Q ss_pred ------cCceEEEec
Q 019702 251 ------GGVDTVTLG 259 (337)
Q Consensus 251 ------~~G~iv~~g 259 (337)
++|++|++|
T Consensus 212 ~~~~~~~~G~iv~~g 226 (226)
T cd03270 212 GPGAGVHGGEIVAQG 226 (226)
T ss_pred CCCccccCCEEEecC
Confidence 899999875
No 345
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=99.89 E-value=1.8e-21 Score=187.04 Aligned_cols=211 Identities=18% Similarity=0.242 Sum_probs=153.0
Q ss_pred CCeeEEEEecCCccEEEEeCccCceeccCCCCCHHHHHHHHHHHhc------cCC----CcceEecC-ceeEEEEEeeCC
Q 019702 26 GQLLEVILDLGRLPEARYLGEFGGKYLRSTEVSVEELEYAQSAVGE------FGG----DNRAGIEG-TLHRISAIRSRK 94 (337)
Q Consensus 26 ~~~~ei~l~~g~~~~~~~~g~~~~~~~~~~~~t~~~l~~~~~~~~~------~~~----~~~~~~~g-~~~rv~~~~~~~ 94 (337)
.++||||+..+.++.+|.+|.+. .....+++.+++..++..+.. +.. +.++.+++ .++|++.+...+
T Consensus 12 ~~aSDIhi~~~~~v~~R~~G~l~--~~~~~~l~~~~~~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~r~R~~~~~~~~ 89 (343)
T TIGR01420 12 NGASDIHLTAGSPPAMRIDGDLV--RIEFEPLTPEDTQKLLREILSEKQREEFEENGELDFSYSLPGVSRFRVNAFKQRG 89 (343)
T ss_pred CCCcEEEEECCCeEEEEECCEEE--EcCCCCCCHHHHHHHHHHHhHHHHHhhhcccCcEEEEEEcCCCcEEEEEEeecCC
Confidence 67999999999999999999864 555567899999887765521 112 22333444 378999998878
Q ss_pred CcEeeEEEEECCccccchhhh------hh-cccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEcCCcccccCC
Q 019702 95 GAIVGLTCRVGRAVSGHIDMV------YD-LLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDG 167 (337)
Q Consensus 95 g~i~~l~~r~~~~~~~~~~~l------~~-~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~~~~ei~~~~ 167 (337)
|. .+++|........++.+ .. ...++++++|.||+||||||+++++.+.+++...+++.+++++.|+....
T Consensus 90 g~--~~viR~~~~~~~~l~~lg~~~~l~~~~~~~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~~ 167 (343)
T TIGR01420 90 GV--ALVLRLIPSKIPTFEELGLPPVLRELAERPRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHRN 167 (343)
T ss_pred Ce--EEEEEcCCCCCCCHHHcCCCHHHHHHHhhcCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhccC
Confidence 87 89998865433222222 21 23467899999999999999999999988755467899999888764321
Q ss_pred CCcccccccchhccCCCcchhHHHHHHHHHhhCCcEEEEcCCCCHHHHHHHHHHHhcCCeEEEEEcCcchhHHhhchHH
Q 019702 168 DIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRSIAERGVMLIGTAHGEWLENIIKNPIL 246 (337)
Q Consensus 168 ~~~~~~~~~~~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~~ld~~~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~ 246 (337)
.. ....+.++........-+++.+|+++||+|++||++....+..+..++.+|++|+.|.|..+.... .+|++
T Consensus 168 ~~-----~~i~q~evg~~~~~~~~~l~~~lr~~pd~i~vgEird~~~~~~~l~aa~tGh~v~~T~Ha~~~~~~-~~Rl~ 240 (343)
T TIGR01420 168 KR-----SLINQREVGLDTLSFANALRAALREDPDVILIGEMRDLETVELALTAAETGHLVFGTLHTNSAAQT-IERII 240 (343)
T ss_pred cc-----ceEEccccCCCCcCHHHHHHHhhccCCCEEEEeCCCCHHHHHHHHHHHHcCCcEEEEEcCCCHHHH-HHHHH
Confidence 00 001112222223445668999999999999999999988888777788999999999999986654 45665
No 346
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=1.3e-22 Score=179.67 Aligned_cols=165 Identities=20% Similarity=0.147 Sum_probs=121.2
Q ss_pred EeeEEEEECCc-cccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccC-CCeEEEEcCCc------c-----c
Q 019702 97 IVGLTCRVGRA-VSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEF-QKRVVIVDTSN------E-----I 163 (337)
Q Consensus 97 i~~l~~r~~~~-~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~-~~~i~~v~~~~------e-----i 163 (337)
|++|....... .+ ++.+++.+++|++.+|+||||||||||..+|+|.-.... .+.|.+-.+.. | +
T Consensus 6 I~dLhv~v~~~keI--LkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~Gi 83 (251)
T COG0396 6 IKDLHVEVEGKKEI--LKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARAGI 83 (251)
T ss_pred EeeeEEEecCchhh--hcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhcCC
Confidence 67899988774 55 999999999999999999999999999999999753221 23343321110 0 0
Q ss_pred ccCCCCccccc----------------------cc--------c-----------hhcc-CCCcchhHHHHHHHHHhhCC
Q 019702 164 GGDGDIPHSAI----------------------GT--------A-----------RRMQ-VPEPSLQHKVMIEAVENHMP 201 (337)
Q Consensus 164 ~~~~~~~~~~~----------------------~~--------~-----------~~~~-~~S~g~k~r~~ia~al~~~P 201 (337)
....+.|...- .. + +.+. -+|||+|+|..|..+++++|
T Consensus 84 fLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~~~leP 163 (251)
T COG0396 84 FLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLLEP 163 (251)
T ss_pred EEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHHHHhcCC
Confidence 00011111100 00 0 0011 14999999999999999999
Q ss_pred cEEEEcCCCCHHHHHH-------HHHHHhcCCeEEEEEcCcchhHHhh-chHHHHHhcCceEEEecCHHHHHH
Q 019702 202 EVIIVDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIK-NPILSDLIGGVDTVTLGDEEARAR 266 (337)
Q Consensus 202 ~vlilDEp~~~ld~~~-------l~~~~~~G~tvi~t~H~~~~~~~~~-d~v~~~ll~~G~iv~~g~~~~~~~ 266 (337)
++.|||||.|++|+++ +..+++.|.+++++||.....+.+. |.+. +|.+|+||..|+| ++..
T Consensus 164 kl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vh--vl~~GrIv~sG~~-el~~ 233 (251)
T COG0396 164 KLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVH--VLYDGRIVKSGDP-ELAE 233 (251)
T ss_pred CEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEE--EEECCEEEecCCH-HHHH
Confidence 9999999999999765 4556778999999999999887664 6777 9999999999999 5544
No 347
>PRK13409 putative ATPase RIL; Provisional
Probab=99.89 E-value=2.5e-23 Score=212.65 Aligned_cols=148 Identities=18% Similarity=0.181 Sum_probs=110.2
Q ss_pred eEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEE-----------EEcC--------
Q 019702 99 GLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVV-----------IVDT-------- 159 (337)
Q Consensus 99 ~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~-----------~v~~-------- 159 (337)
.++++|+... ..+++++ .+++|++++|+|||||||||||++|+|+++|+. +.+. +-..
T Consensus 78 ~~~~~yg~~~-~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~-G~i~~~~~~~~~~~~~~G~~l~~~~~~ 154 (590)
T PRK13409 78 EPVHRYGVNG-FKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNL-GDYEEEPSWDEVLKRFRGTELQNYFKK 154 (590)
T ss_pred CceEEecCCc-eeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCC-ccccCCCcHHHHHHHhCChHHHHHHHH
Confidence 4999998632 2388998 899999999999999999999999999999984 4443 1000
Q ss_pred ----CcccccC----CCCccc---c--------------------cc----cchhccCCCcchhHHHHHHHHHhhCCcEE
Q 019702 160 ----SNEIGGD----GDIPHS---A--------------------IG----TARRMQVPEPSLQHKVMIEAVENHMPEVI 204 (337)
Q Consensus 160 ----~~ei~~~----~~~~~~---~--------------------~~----~~~~~~~~S~g~k~r~~ia~al~~~P~vl 204 (337)
...+... ...|.. . ++ ..+....+|+||+||++||+|++.+|++|
T Consensus 155 ~~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia~al~~~p~ll 234 (590)
T PRK13409 155 LYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKVDERGKLDEVVERLGLENILDRDISELSGGELQRVAIAAALLRDADFY 234 (590)
T ss_pred HhccCcceeecccchhhhhhhhcchHHHHHHhhhHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 0000100 000000 0 00 01234457999999999999999999999
Q ss_pred EEcCCCCHHHH-------HHHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcC
Q 019702 205 IVDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGG 252 (337)
Q Consensus 205 ilDEp~~~ld~-------~~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~ 252 (337)
+|||||+++|. +.+.++++ |.+||+++|+++++..+||+++ ++.+
T Consensus 235 lLDEPts~LD~~~~~~l~~~i~~l~~-g~tvIivsHd~~~l~~~~D~v~--vl~~ 286 (590)
T PRK13409 235 FFDEPTSYLDIRQRLNVARLIRELAE-GKYVLVVEHDLAVLDYLADNVH--IAYG 286 (590)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEE--EEeC
Confidence 99999999995 34555566 9999999999999999999998 8875
No 348
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.89 E-value=3.8e-23 Score=209.47 Aligned_cols=148 Identities=14% Similarity=0.154 Sum_probs=108.5
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCC------------------CeEEEEc
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ------------------KRVVIVD 158 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~------------------~~i~~v~ 158 (337)
+++++++|+......++++++.+++|+.++|+||||||||||++.|+|+++|+.| .++.+++
T Consensus 323 ~~~v~f~y~~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~~v~ 402 (529)
T TIGR02857 323 FSGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVP 402 (529)
T ss_pred EEEEEEECCCCCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheEEEc
Confidence 6799999976433359999999999999999999999999999999999998732 1244554
Q ss_pred CCcccccC----------CCCccccccc----------------------chhccCCCcchhHHHHHHHHHhhCCcEEEE
Q 019702 159 TSNEIGGD----------GDIPHSAIGT----------------------ARRMQVPEPSLQHKVMIEAVENHMPEVIIV 206 (337)
Q Consensus 159 ~~~ei~~~----------~~~~~~~~~~----------------------~~~~~~~S~g~k~r~~ia~al~~~P~vlil 206 (337)
+...+... .......+.. ...-..+||||+||+++|||+..+|+++++
T Consensus 403 Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~~ilil 482 (529)
T TIGR02857 403 QHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPLLLL 482 (529)
T ss_pred CCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 44322110 0000000000 011234799999999999999999999999
Q ss_pred cCCCCHHHHHH-------HHHHHhcCCeEEEEEcCcchhHHhhchHH
Q 019702 207 DEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPIL 246 (337)
Q Consensus 207 DEp~~~ld~~~-------l~~~~~~G~tvi~t~H~~~~~~~~~d~v~ 246 (337)
||||+++|.+. +..+ .++.|+|++||+.+.. ..||+++
T Consensus 483 DE~ts~lD~~~~~~i~~~l~~~-~~~~t~i~itH~~~~~-~~~d~i~ 527 (529)
T TIGR02857 483 DEPTAHLDAETEALVTEALRAL-AQGRTVLLVTHRLALA-ERADRIV 527 (529)
T ss_pred eCcccccCHHHHHHHHHHHHHh-cCCCEEEEEecCHHHH-HhCCEEE
Confidence 99999999532 2222 2579999999999876 4688876
No 349
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.89 E-value=7.6e-23 Score=228.33 Aligned_cols=168 Identities=14% Similarity=0.162 Sum_probs=129.1
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCC-----CeEEEEcCCcccccC-----
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ-----KRVVIVDTSNEIGGD----- 166 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~-----~~i~~v~~~~ei~~~----- 166 (337)
+++++++|+......++++++.+++|+.++|+||||||||||+++|+|+++|..| +.+.|++|...+...
T Consensus 639 ~~~~~~~~~~~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~i~yv~Q~~~l~~~Ti~eN 718 (1522)
T TIGR00957 639 VHNATFTWARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGSVAYVPQQAWIQNDSLREN 718 (1522)
T ss_pred EEEeEEEcCCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECCEEEEEcCCccccCCcHHHH
Confidence 6789999975433359999999999999999999999999999999999988743 356777776543210
Q ss_pred ----CCCccccc-------------cc---------chhccCCCcchhHHHHHHHHHhhCCcEEEEcCCCCHHHHHH---
Q 019702 167 ----GDIPHSAI-------------GT---------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA--- 217 (337)
Q Consensus 167 ----~~~~~~~~-------------~~---------~~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~~ld~~~--- 217 (337)
..+..... .. ..+...+|||||||++||||+..+|+++++|||++++|...
T Consensus 719 I~~g~~~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~ 798 (1522)
T TIGR00957 719 ILFGKALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKH 798 (1522)
T ss_pred hhcCCccCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHH
Confidence 00100000 00 01223579999999999999999999999999999999632
Q ss_pred -HHHH-----HhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHh
Q 019702 218 -CRSI-----AERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (337)
Q Consensus 218 -l~~~-----~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~ 267 (337)
+..+ ..+|.|+|++||+.+.... ||+++ +|++|+++..|+++++...
T Consensus 799 i~~~l~~~~~~~~~~tvIlvTH~~~~l~~-~D~ii--~l~~G~i~~~g~~~~l~~~ 851 (1522)
T TIGR00957 799 IFEHVIGPEGVLKNKTRILVTHGISYLPQ-VDVII--VMSGGKISEMGSYQELLQR 851 (1522)
T ss_pred HHHHHhhhhhhhcCCEEEEEeCChhhhhh-CCEEE--EecCCeEEeeCCHHHHHhc
Confidence 2222 1347899999999998764 99999 9999999999999988753
No 350
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=99.88 E-value=3.5e-21 Score=185.42 Aligned_cols=227 Identities=19% Similarity=0.213 Sum_probs=158.8
Q ss_pred CHHHHHHHhcccCCCCeeEEEEecCCccEEEEeCccCceeccCCCCCHHHHHHHHHHHh------ccCC----CcceEec
Q 019702 12 PSDLRDRLQNDSKRGQLLEVILDLGRLPEARYLGEFGGKYLRSTEVSVEELEYAQSAVG------EFGG----DNRAGIE 81 (337)
Q Consensus 12 p~~~~~~l~~~~~~~~~~ei~l~~g~~~~~~~~g~~~~~~~~~~~~t~~~l~~~~~~~~------~~~~----~~~~~~~ 81 (337)
|..+.+.|.... +.++||||+..+.++.+|++|.+. .+...+++.++++.++..+. ++.. +.++.+.
T Consensus 3 ~~~~~~ll~~a~-~~~aSDIhi~~~~~i~~ri~G~l~--~~~~~~l~~~~~~~li~~l~~~~~~~~~~~~~di~~~~~~~ 79 (358)
T TIGR02524 3 PKFIDDLLEHAE-RLGASDITIQTGEAIFAEVYGRLL--KITNRELSNAELGDLINAIYGPNATTQILRGEDIDTHYEFR 79 (358)
T ss_pred hHHHHHHHHHHH-HCCCcEEEEECCCceEEEECCEEE--EecCCCCCHHHHHHHHHHHhhHHHHHHHHhCCCcccccccc
Confidence 455555555433 478999999999999999999874 55556789999888776541 1211 3333331
Q ss_pred ---C-c-eeEEEEEee----CCCcEeeEEEEECCccccchhhhhh-------cccCCCEEEEEcCCCCcHHHHHHHHHcc
Q 019702 82 ---G-T-LHRISAIRS----RKGAIVGLTCRVGRAVSGHIDMVYD-------LLHYGKSILFVGRPGVGKTTVMREIARV 145 (337)
Q Consensus 82 ---g-~-~~rv~~~~~----~~g~i~~l~~r~~~~~~~~~~~l~~-------~v~~g~~v~IiGpnGsGKTTLL~~l~gl 145 (337)
| . ++|+|.+.. .+|. .+++|........++.+.+ ...+++.++|+|||||||||+|++|++.
T Consensus 80 ~~~~~~~~~Rv~~~~~~~~~~~g~--~~vlR~l~~~~~~l~~l~~~~~~~~~~~~~~glilI~GpTGSGKTTtL~aLl~~ 157 (358)
T TIGR02524 80 PNRGERFRYRINATACHVDGHDAI--QITIRAIPAEPPKLSKLDLPAAIIDAIAPQEGIVFITGATGSGKSTLLAAIIRE 157 (358)
T ss_pred cCCCCeEEEEEEeEecccCCCCce--EEEEEecCCCCCCHHHcCCCHHHHHHHhccCCEEEEECCCCCCHHHHHHHHHHH
Confidence 2 2 589998863 3366 8999997655533333332 2347899999999999999999999999
Q ss_pred cccc--CCCeEEEEcCCcccccCCCCcccccccchhccCCCcchhHHHHHHHHHhhCCcEEEEcCCCCHHHHHHHHHHHh
Q 019702 146 LSDE--FQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRSIAE 223 (337)
Q Consensus 146 l~~~--~~~~i~~v~~~~ei~~~~~~~~~~~~~~~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~~ld~~~l~~~~~ 223 (337)
+.+. .++++.+++++.|+.... ... ......+..+........-++..+|.++||+++++|.++.+.++++.+++.
T Consensus 158 i~~~~~~~~~Ivt~EdpiE~~~~~-~~~-~~~~v~Q~~v~~~~~~~~~~l~~aLR~~Pd~i~vGEiRd~et~~~al~aa~ 235 (358)
T TIGR02524 158 LAEAPDSHRKILTYEAPIEFVYDE-IET-ISASVCQSEIPRHLNNFAAGVRNALRRKPHAILVGEARDAETISAALEAAL 235 (358)
T ss_pred HhhcCCCCcEEEEeCCCceEeccc-ccc-ccceeeeeeccccccCHHHHHHHHhccCCCEEeeeeeCCHHHHHHHHHHHH
Confidence 8643 246789999888864321 100 001111222222334566778889999999999999999999988888899
Q ss_pred cCCeEEEEEcCcchhHHhhchHH
Q 019702 224 RGVMLIGTAHGEWLENIIKNPIL 246 (337)
Q Consensus 224 ~G~tvi~t~H~~~~~~~~~d~v~ 246 (337)
+||.|+.|.|..+....+. |++
T Consensus 236 tGh~v~tTlHa~~~~~~i~-Rl~ 257 (358)
T TIGR02524 236 TGHPVYTTLHSSGVAETIR-RLV 257 (358)
T ss_pred cCCcEEEeeccCCHHHHHH-HHH
Confidence 9999999999998665443 444
No 351
>PLN03232 ABC transporter C family member; Provisional
Probab=99.88 E-value=1.1e-22 Score=226.84 Aligned_cols=168 Identities=15% Similarity=0.090 Sum_probs=129.4
Q ss_pred EeeEEEEECCc-cccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCC------CeEEEEcCCcccccC---
Q 019702 97 IVGLTCRVGRA-VSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ------KRVVIVDTSNEIGGD--- 166 (337)
Q Consensus 97 i~~l~~r~~~~-~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~------~~i~~v~~~~ei~~~--- 166 (337)
+++++++|... ....++++++.+++|+.++|+||+|||||||+++|+|++.|..+ +.+.|++|.+.+...
T Consensus 617 ~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~~~~~Iayv~Q~p~Lf~gTIr 696 (1495)
T PLN03232 617 IKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRGSVAYVPQVSWIFNATVR 696 (1495)
T ss_pred EEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEEEecCcEEEEcCccccccccHH
Confidence 67899999752 23359999999999999999999999999999999999998753 457788776554221
Q ss_pred ------CCCccccccc----------c------------hhccCCCcchhHHHHHHHHHhhCCcEEEEcCCCCHHHHHH-
Q 019702 167 ------GDIPHSAIGT----------A------------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA- 217 (337)
Q Consensus 167 ------~~~~~~~~~~----------~------------~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~~ld~~~- 217 (337)
..+....+.. . .+-..+|||||||++||||+..+|++++||||++++|.+.
T Consensus 697 eNI~fg~~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~ 776 (1495)
T PLN03232 697 ENILFGSDFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVA 776 (1495)
T ss_pred HHhhcCCccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHH
Confidence 0011110000 0 1112479999999999999999999999999999999532
Q ss_pred ---HHHH---HhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHh
Q 019702 218 ---CRSI---AERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (337)
Q Consensus 218 ---l~~~---~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~ 267 (337)
+..+ ...|.|+|++||..+.. ..||+++ +|++|+++..|+.+++...
T Consensus 777 ~~I~~~~l~~~l~~kT~IlvTH~~~~l-~~aD~Ii--~L~~G~i~~~Gt~~eL~~~ 829 (1495)
T PLN03232 777 HQVFDSCMKDELKGKTRVLVTNQLHFL-PLMDRII--LVSEGMIKEEGTFAELSKS 829 (1495)
T ss_pred HHHHHHHhhhhhcCCEEEEEECChhhH-HhCCEEE--EEeCCEEEEecCHHHHHhc
Confidence 2222 22579999999999865 5799999 9999999999999998753
No 352
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.88 E-value=1.2e-22 Score=214.61 Aligned_cols=166 Identities=17% Similarity=0.198 Sum_probs=127.0
Q ss_pred EeeEEEEECCc-cccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCC------------------CeEEEE
Q 019702 97 IVGLTCRVGRA-VSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ------------------KRVVIV 157 (337)
Q Consensus 97 i~~l~~r~~~~-~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~------------------~~i~~v 157 (337)
+++++|+|+.. ....++++++.+++|+.++|+||+||||||.+..|-+++.|+.+ .++..|
T Consensus 990 ~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~lV 1069 (1228)
T KOG0055|consen 990 FRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIGLV 1069 (1228)
T ss_pred EeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhccee
Confidence 55999999743 34568999999999999999999999999999999999998732 223333
Q ss_pred cCCcccccC--------C--CCcccccccc----------------------hhccCCCcchhHHHHHHHHHhhCCcEEE
Q 019702 158 DTSNEIGGD--------G--DIPHSAIGTA----------------------RRMQVPEPSLQHKVMIEAVENHMPEVII 205 (337)
Q Consensus 158 ~~~~ei~~~--------~--~~~~~~~~~~----------------------~~~~~~S~g~k~r~~ia~al~~~P~vli 205 (337)
.|.+-+... + .+++..+..+ .+-..+|||||||+|||||+..+|+||+
T Consensus 1070 sQEP~LF~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilRnPkILL 1149 (1228)
T KOG0055|consen 1070 SQEPVLFNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRNPKILL 1149 (1228)
T ss_pred ccCchhhcccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHcCCCeee
Confidence 343322110 0 1121111100 1223469999999999999999999999
Q ss_pred EcCCCCHHHHH-------HHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHH
Q 019702 206 VDEIGTEAEAH-------ACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (337)
Q Consensus 206 lDEp~~~ld~~-------~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~ 266 (337)
|||.||.||.+ ++.+ +..|.|.|+++|-++.+ .-||.++ ++++|++++.|+.+++.+
T Consensus 1150 LDEATSALDseSErvVQeALd~-a~~gRT~IvIAHRLSTI-qnaD~I~--Vi~~G~VvE~GtH~~L~~ 1213 (1228)
T KOG0055|consen 1150 LDEATSALDSESERVVQEALDR-AMEGRTTIVIAHRLSTI-QNADVIA--VLKNGKVVEQGTHDELLA 1213 (1228)
T ss_pred eeccchhhhhhhHHHHHHHHHH-hhcCCcEEEEecchhhh-hcCCEEE--EEECCEEEecccHHHHHh
Confidence 99999999952 3333 35689999999999976 5799999 999999999999999987
No 353
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.88 E-value=1.3e-22 Score=205.60 Aligned_cols=138 Identities=13% Similarity=0.134 Sum_probs=101.3
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCC-----------------eEEEEcC
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK-----------------RVVIVDT 159 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~-----------------~i~~v~~ 159 (337)
+++++++|+... ..++++++.+++|+.++|+||+|||||||++.|+|+++|+.|. .+.+++|
T Consensus 337 ~~~vsf~Y~~~~-~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~~~~lr~~i~~V~Q 415 (529)
T TIGR02868 337 LRDLSFGYPGSP-PVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQDELRRRISVFAQ 415 (529)
T ss_pred EEEEEEecCCCC-ceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhHHHHHHhheEEEcc
Confidence 679999997543 3599999999999999999999999999999999999998421 3456666
Q ss_pred CcccccC----------CCCccccccc-c---------------------hhccCCCcchhHHHHHHHHHhhCCcEEEEc
Q 019702 160 SNEIGGD----------GDIPHSAIGT-A---------------------RRMQVPEPSLQHKVMIEAVENHMPEVIIVD 207 (337)
Q Consensus 160 ~~ei~~~----------~~~~~~~~~~-~---------------------~~~~~~S~g~k~r~~ia~al~~~P~vlilD 207 (337)
.+.+... .......+.. + .+-..+||||+||++||||+..+|++|++|
T Consensus 416 ~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~iliLD 495 (529)
T TIGR02868 416 DAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLD 495 (529)
T ss_pred CcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 5443211 0001111000 0 112247999999999999999999999999
Q ss_pred CCCCHHHHHH---H-HHHH--hcCCeEEEEEcCc
Q 019702 208 EIGTEAEAHA---C-RSIA--ERGVMLIGTAHGE 235 (337)
Q Consensus 208 Ep~~~ld~~~---l-~~~~--~~G~tvi~t~H~~ 235 (337)
|||+++|.+. + ..+. ..+.|+|++||.+
T Consensus 496 E~TSaLD~~te~~I~~~l~~~~~~~TvIiItHrl 529 (529)
T TIGR02868 496 EPTEHLDAGTESELLEDLLAALSGKTVVVITHHL 529 (529)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 9999999532 2 2222 3478999999973
No 354
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.88 E-value=1.8e-22 Score=224.72 Aligned_cols=164 Identities=16% Similarity=0.165 Sum_probs=125.1
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCC-------------------eEEEE
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK-------------------RVVIV 157 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~-------------------~i~~v 157 (337)
+++++++|......+++++++.+++|+.++|+|+||||||||+++|.|++. . .+ ++.++
T Consensus 1220 f~nVs~~Y~~~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~-~G~I~IdG~di~~i~~~~lR~~is~I 1297 (1490)
T TIGR01271 1220 VQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-T-EGEIQIDGVSWNSVTLQTWRKAFGVI 1297 (1490)
T ss_pred EEEEEEEeCCCCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-C-CcEEEECCEEcccCCHHHHHhceEEE
Confidence 679999997654456999999999999999999999999999999999986 3 33 34455
Q ss_pred cCCcccccCCCCccc----------cccc-c---------------------hhccCCCcchhHHHHHHHHHhhCCcEEE
Q 019702 158 DTSNEIGGDGDIPHS----------AIGT-A---------------------RRMQVPEPSLQHKVMIEAVENHMPEVII 205 (337)
Q Consensus 158 ~~~~ei~~~~~~~~~----------~~~~-~---------------------~~~~~~S~g~k~r~~ia~al~~~P~vli 205 (337)
+|.+.+.. +.+..+ .+.. + ..-..+|+||+||++||||+..+|+|||
T Consensus 1298 pQdp~LF~-GTIR~NLdp~~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILl 1376 (1490)
T TIGR01271 1298 PQKVFIFS-GTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILL 1376 (1490)
T ss_pred eCCCccCc-cCHHHHhCcccCCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEE
Confidence 55443321 111100 0000 0 0012479999999999999999999999
Q ss_pred EcCCCCHHHHHH---H-HHHH--hcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHH
Q 019702 206 VDEIGTEAEAHA---C-RSIA--ERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (337)
Q Consensus 206 lDEp~~~ld~~~---l-~~~~--~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~ 266 (337)
|||||+++|.+. + ..+. ..+.|||+++|.++.+. .+|+++ +|++|++++.|+|++++.
T Consensus 1377 LDEaTS~lD~~Te~~I~~~L~~~~~~~TvI~IaHRl~ti~-~~DrIl--vL~~G~ivE~g~p~~Ll~ 1440 (1490)
T TIGR01271 1377 LDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHRVEALL-ECQQFL--VIEGSSVKQYDSIQKLLN 1440 (1490)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH-hCCEEE--EEECCEEEEeCCHHHHHc
Confidence 999999999532 2 2222 34799999999998764 599999 999999999999999885
No 355
>PLN03130 ABC transporter C family member; Provisional
Probab=99.88 E-value=2.5e-22 Score=224.53 Aligned_cols=168 Identities=15% Similarity=0.074 Sum_probs=129.2
Q ss_pred EeeEEEEECCc-cccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccC-C-----CeEEEEcCCcccccC---
Q 019702 97 IVGLTCRVGRA-VSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEF-Q-----KRVVIVDTSNEIGGD--- 166 (337)
Q Consensus 97 i~~l~~r~~~~-~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~-~-----~~i~~v~~~~ei~~~--- 166 (337)
+++++++|... ....++++++.+++|+.++|+||+|||||||+++|+|.+.|.. + +.+.|++|.+.+...
T Consensus 617 ~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~~~Iayv~Q~p~LfngTIr 696 (1622)
T PLN03130 617 IKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRGTVAYVPQVSWIFNATVR 696 (1622)
T ss_pred EEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEEcCeEEEEcCccccCCCCHH
Confidence 67899999743 2235999999999999999999999999999999999999875 2 467778776554221
Q ss_pred ------CCCccccccc----------------------chhccCCCcchhHHHHHHHHHhhCCcEEEEcCCCCHHHHHH-
Q 019702 167 ------GDIPHSAIGT----------------------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA- 217 (337)
Q Consensus 167 ------~~~~~~~~~~----------------------~~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~~ld~~~- 217 (337)
..+....+.. -.+-..+|||||||++||||+..+|++++||||++++|.+.
T Consensus 697 eNI~fg~~~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~ 776 (1622)
T PLN03130 697 DNILFGSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVG 776 (1622)
T ss_pred HHHhCCCcccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHH
Confidence 0011110000 01122479999999999999999999999999999999532
Q ss_pred ---HHHH-H--hcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHh
Q 019702 218 ---CRSI-A--ERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (337)
Q Consensus 218 ---l~~~-~--~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~ 267 (337)
+..+ . .+|.|+|++||..+.. ..+|+++ +|++|++++.|+.+++...
T Consensus 777 ~~I~~~~l~~~l~~kTvIlVTH~l~~l-~~aD~Ii--~L~~G~i~e~Gt~~eL~~~ 829 (1622)
T PLN03130 777 RQVFDKCIKDELRGKTRVLVTNQLHFL-SQVDRII--LVHEGMIKEEGTYEELSNN 829 (1622)
T ss_pred HHHHHHHhhHHhcCCEEEEEECCHhHH-HhCCEEE--EEeCCEEEEeCCHHHHHhc
Confidence 2222 1 2589999999999865 5799999 9999999999999998753
No 356
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.87 E-value=2e-22 Score=202.19 Aligned_cols=166 Identities=14% Similarity=0.234 Sum_probs=124.5
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCC-------CeEEEEcCCcc-cccC--
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ-------KRVVIVDTSNE-IGGD-- 166 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~-------~~i~~v~~~~e-i~~~-- 166 (337)
++++++.|... ...+.++++.+.+|+.++|+||||+||||||+.|+|.+.|..+ -+++|++|... +...
T Consensus 324 ~~~~~~~y~~~-~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t 402 (530)
T COG0488 324 FENVSKGYDGG-RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKT 402 (530)
T ss_pred EeccccccCCC-ceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCc
Confidence 66899999654 1248999999999999999999999999999999998877632 24667766542 1110
Q ss_pred ------CCCc---cccc----c--------cchhccCCCcchhHHHHHHHHHhhCCcEEEEcCCCCHHHHHHHHHH----
Q 019702 167 ------GDIP---HSAI----G--------TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRSI---- 221 (337)
Q Consensus 167 ------~~~~---~~~~----~--------~~~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~~ld~~~l~~~---- 221 (337)
...+ ...+ + ....+..+|||+|.|+++|..+...|.+|||||||+.+|++.+..+
T Consensus 403 ~~d~l~~~~~~~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL 482 (530)
T COG0488 403 VLEELSEGFPDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEAL 482 (530)
T ss_pred HHHHHHhhCccccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHH
Confidence 0011 0100 0 0144567899999999999999999999999999999997654433
Q ss_pred HhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEe-cCHHHHHH
Q 019702 222 AERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL-GDEEARAR 266 (337)
Q Consensus 222 ~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~-g~~~~~~~ 266 (337)
.+-.-|||++|||..+++.+|++++ ++.+ .+... |+.++...
T Consensus 483 ~~f~Gtvl~VSHDr~Fl~~va~~i~--~~~~-~~~~~~g~y~~y~~ 525 (530)
T COG0488 483 LDFEGTVLLVSHDRYFLDRVATRIW--LVED-KVEEFEGGYEDYLE 525 (530)
T ss_pred HhCCCeEEEEeCCHHHHHhhcceEE--EEcC-ceeEcCCCHHHHHH
Confidence 3446799999999999999999999 7776 54444 77666543
No 357
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.87 E-value=2.1e-22 Score=208.74 Aligned_cols=151 Identities=15% Similarity=0.189 Sum_probs=112.8
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCC-------CeEEEEcCCcccccC---
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ-------KRVVIVDTSNEIGGD--- 166 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~-------~~i~~v~~~~ei~~~--- 166 (337)
+++++++|+... ..++++++.+++|+.++|+||||||||||+++|+|+++|+.+ .++.++++...+...
T Consensus 454 ~~nv~~~~~~~~-~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~~~~i~~v~Q~~~l~~~tv~ 532 (659)
T TIGR00954 454 FENIPLVTPNGD-VLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPAKGKLFYVPQRPYMTLGTLR 532 (659)
T ss_pred EEeeEEECCCCC-eeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecCCCcEEEECCCCCCCCcCHH
Confidence 678999985332 259999999999999999999999999999999999987632 246677765432210
Q ss_pred -----C---------CCccccccc----------ch----------hccCCCcchhHHHHHHHHHhhCCcEEEEcCCCCH
Q 019702 167 -----G---------DIPHSAIGT----------AR----------RMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTE 212 (337)
Q Consensus 167 -----~---------~~~~~~~~~----------~~----------~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~~ 212 (337)
. ......+.. .. ....+|+||+||++||+|+.++|+++|+||||++
T Consensus 533 eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~illLDEpts~ 612 (659)
T TIGR00954 533 DQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDECTSA 612 (659)
T ss_pred HHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccC
Confidence 0 000001000 01 1146899999999999999999999999999999
Q ss_pred HHHHH---H-HHHHhcCCeEEEEEcCcchhHHhhchHHHHHhc
Q 019702 213 AEAHA---C-RSIAERGVMLIGTAHGEWLENIIKNPILSDLIG 251 (337)
Q Consensus 213 ld~~~---l-~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~ 251 (337)
+|.+. + ..+.+.|.|+|++||+.+.. ..||+++ +++
T Consensus 613 LD~~~~~~l~~~l~~~~~tvI~isH~~~~~-~~~d~il--~l~ 652 (659)
T TIGR00954 613 VSVDVEGYMYRLCREFGITLFSVSHRKSLW-KYHEYLL--YMD 652 (659)
T ss_pred CCHHHHHHHHHHHHHcCCEEEEEeCchHHH-HhCCEEE--EEe
Confidence 99643 2 22345589999999999976 6799988 664
No 358
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.87 E-value=2.3e-22 Score=222.50 Aligned_cols=165 Identities=18% Similarity=0.170 Sum_probs=120.5
Q ss_pred EeeEEEEECC--ccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHcccc---ccCC--------------CeEEEE
Q 019702 97 IVGLTCRVGR--AVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLS---DEFQ--------------KRVVIV 157 (337)
Q Consensus 97 i~~l~~r~~~--~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~---~~~~--------------~~i~~v 157 (337)
++++++.|.. .....++++++.+++|++++|+|||||||||||++|+|+++ ++.+ +.+.++
T Consensus 762 ~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~~i~yv 841 (1394)
T TIGR00956 762 WRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRSIGYV 841 (1394)
T ss_pred EEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhcceeee
Confidence 5688888852 22345999999999999999999999999999999999986 3311 123445
Q ss_pred cCCcccccCC----------------CCcccc----c-------cc----chhcc----CCCcchhHHHHHHHHHhhCCc
Q 019702 158 DTSNEIGGDG----------------DIPHSA----I-------GT----ARRMQ----VPEPSLQHKVMIEAVENHMPE 202 (337)
Q Consensus 158 ~~~~ei~~~~----------------~~~~~~----~-------~~----~~~~~----~~S~g~k~r~~ia~al~~~P~ 202 (337)
.|........ ...... + +. ....+ -+|+|||||++||++|+.+|+
T Consensus 842 ~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~aL~~~P~ 921 (1394)
T TIGR00956 842 QQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELVAKPK 921 (1394)
T ss_pred cccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHHHHcCCC
Confidence 4432111000 000000 0 00 01122 479999999999999999997
Q ss_pred -EEEEcCCCCHHHH-------HHHHHHHhcCCeEEEEEcCcchh-HHhhchHHHHHhcCc-eEEEecCHHH
Q 019702 203 -VIIVDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLE-NIIKNPILSDLIGGV-DTVTLGDEEA 263 (337)
Q Consensus 203 -vlilDEp~~~ld~-------~~l~~~~~~G~tvi~t~H~~~~~-~~~~d~v~~~ll~~G-~iv~~g~~~~ 263 (337)
+|+|||||+++|. +.+++++++|.|||+|+|+.+.. ...+|+++ ++++| ++++.|++.+
T Consensus 922 ~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl--~L~~GG~iv~~G~~~~ 990 (1394)
T TIGR00956 922 LLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLL--LLQKGGQTVYFGDLGE 990 (1394)
T ss_pred eEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEE--EEcCCCEEEEECCccc
Confidence 9999999999994 45667777899999999999863 46799999 88876 9999999753
No 359
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.87 E-value=5.7e-22 Score=173.96 Aligned_cols=162 Identities=15% Similarity=0.176 Sum_probs=120.0
Q ss_pred eeEEEEECCccc---cchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEcC---------------
Q 019702 98 VGLTCRVGRAVS---GHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDT--------------- 159 (337)
Q Consensus 98 ~~l~~r~~~~~~---~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~~--------------- 159 (337)
.++.+-|.+..+ .+++.+++.+..|+++-|+|.||||||||+++|+|.+.|+ +++|.+-..
T Consensus 5 ~~~~~~f~~g~~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t-~G~I~Idg~dVtk~~~~~RA~~la 83 (263)
T COG1101 5 SNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPT-SGQILIDGVDVTKKSVAKRANLLA 83 (263)
T ss_pred ccceeeecCCChhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccC-CceEEECceecccCCHHHHhhHHH
Confidence 455666554433 4688999999999999999999999999999999999998 455543221
Q ss_pred ----CcccccC--CCCcccc-----------c---------------------c----cchhccCCCcchhHHHHHHHHH
Q 019702 160 ----SNEIGGD--GDIPHSA-----------I---------------------G----TARRMQVPEPSLQHKVMIEAVE 197 (337)
Q Consensus 160 ----~~ei~~~--~~~~~~~-----------~---------------------~----~~~~~~~~S~g~k~r~~ia~al 197 (337)
.+.-+-+ ..+.++- + + ...+.+.+||||+|.+++..|-
T Consensus 84 rVfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAt 163 (263)
T COG1101 84 RVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMAT 163 (263)
T ss_pred HHhcchhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHh
Confidence 1110000 0000000 0 0 0134567899999999999999
Q ss_pred hhCCcEEEEcCCCCHHHHHH-------HHHHH-hcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHH
Q 019702 198 NHMPEVIIVDEIGTEAEAHA-------CRSIA-ERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEE 262 (337)
Q Consensus 198 ~~~P~vlilDEp~~~ld~~~-------l~~~~-~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~ 262 (337)
.+.|++|+|||-|+++|+.. -.++. +...|.+++||+++.+-.+.+|.+ ++++|+||.+-.-+
T Consensus 164 l~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG~RlI--mLh~G~IvlDv~g~ 234 (263)
T COG1101 164 LHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLI--MLHSGKIVLDVTGE 234 (263)
T ss_pred cCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHHHhhCCeEE--EEeCCeEEEEcccc
Confidence 99999999999999999533 22333 557899999999999999999999 99999999874433
No 360
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.87 E-value=2e-22 Score=170.57 Aligned_cols=136 Identities=15% Similarity=0.232 Sum_probs=101.4
Q ss_pred cchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEcCC-------------------cccccC----
Q 019702 110 GHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTS-------------------NEIGGD---- 166 (337)
Q Consensus 110 ~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~~~-------------------~ei~~~---- 166 (337)
..++++++.+.+|++++|+||+|||||||+++++-+++|+. +.+.+-.+. +.+.+.
T Consensus 17 ~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~-G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~tVeD 95 (223)
T COG4619 17 KILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTS-GTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTVED 95 (223)
T ss_pred eeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCC-ceEEEcCccccccChHHHHHHHHHHHcCccccccchhh
Confidence 34999999999999999999999999999999999999984 444332211 111110
Q ss_pred -CCCccc----ccc-----------------cchhccCCCcchhHHHHHHHHHhhCCcEEEEcCCCCHHHH-------HH
Q 019702 167 -GDIPHS----AIG-----------------TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEA-------HA 217 (337)
Q Consensus 167 -~~~~~~----~~~-----------------~~~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~~ld~-------~~ 217 (337)
..+|.. ... ..++...+|||++||.+++|-|..-|+||+|||||+.+|. +.
T Consensus 96 NlifP~~~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsALD~~nkr~ie~m 175 (223)
T COG4619 96 NLIFPWQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEM 175 (223)
T ss_pred ccccchHHhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhcChhhHHHHHHH
Confidence 001100 000 0123445799999999999999999999999999999994 23
Q ss_pred HHHH-HhcCCeEEEEEcCcchhHHhhchHH
Q 019702 218 CRSI-AERGVMLIGTAHGEWLENIIKNPIL 246 (337)
Q Consensus 218 l~~~-~~~G~tvi~t~H~~~~~~~~~d~v~ 246 (337)
+..+ +++.+.++-+|||.+.+...+++++
T Consensus 176 i~~~v~~q~vAv~WiTHd~dqa~rha~k~i 205 (223)
T COG4619 176 IHRYVREQNVAVLWITHDKDQAIRHADKVI 205 (223)
T ss_pred HHHHhhhhceEEEEEecChHHHhhhhheEE
Confidence 3344 4788999999999998888888887
No 361
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.86 E-value=8.7e-22 Score=209.74 Aligned_cols=167 Identities=16% Similarity=0.188 Sum_probs=132.2
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEcCC-----------ccccc
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTS-----------NEIGG 165 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~~~-----------~ei~~ 165 (337)
+.++++.|+.... +++.+++.+++||+.++.|||||||||++++|.|..+|+. +.+.+-... ..+++
T Consensus 567 ~~~L~k~y~~~~~-Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~-G~a~i~g~~i~~~~~~~~~~~~iGy 644 (885)
T KOG0059|consen 567 LNNLSKVYGGKDG-AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTS-GEALIKGHDITVSTDFQQVRKQLGY 644 (885)
T ss_pred Ecceeeeecchhh-hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCc-ceEEEecCccccccchhhhhhhccc
Confidence 4478999987764 6899999999999999999999999999999999999984 333331100 11222
Q ss_pred CC----------------------CCccccccc---------------chhccCCCcchhHHHHHHHHHhhCCcEEEEcC
Q 019702 166 DG----------------------DIPHSAIGT---------------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDE 208 (337)
Q Consensus 166 ~~----------------------~~~~~~~~~---------------~~~~~~~S~g~k~r~~ia~al~~~P~vlilDE 208 (337)
+. +++..++.. ..+...+|+|+|+|+.+|.|+..+|++++|||
T Consensus 645 CPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi~LDE 724 (885)
T KOG0059|consen 645 CPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVILLDE 724 (885)
T ss_pred CCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEEEecC
Confidence 21 111111100 13455679999999999999999999999999
Q ss_pred CCCHHHH-------HHHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHh
Q 019702 209 IGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (337)
Q Consensus 209 p~~~ld~-------~~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~ 267 (337)
|++|.|+ +.+.++++.|..+|.|||.+++++.+|+|+. +|..|++.+.|+++++...
T Consensus 725 PstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMeE~EaLCtR~a--Imv~G~l~ciGs~q~LKsr 788 (885)
T KOG0059|consen 725 PSTGLDPKARRHLWDIIARLRKNGKAIILTSHSMEEAEALCTRTA--IMVIGQLRCIGSPQELKSR 788 (885)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHHhhhhh--eeecCeeEEecChHHHHhh
Confidence 9999995 4566777777799999999999999999999 9999999999999998754
No 362
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.86 E-value=1.2e-21 Score=218.15 Aligned_cols=153 Identities=12% Similarity=0.019 Sum_probs=118.4
Q ss_pred chhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCC-----CeEEEEcCCcccccC---------CCCccc---c
Q 019702 111 HIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ-----KRVVIVDTSNEIGGD---------GDIPHS---A 173 (337)
Q Consensus 111 ~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~-----~~i~~v~~~~ei~~~---------~~~~~~---~ 173 (337)
.++++++.+++|++++|+|||||||||||++|+|+++|..| +.+.|+.+...+... ..+... .
T Consensus 441 ~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g~iayv~Q~~~l~~~Ti~eNI~~g~~~~~~~~~~ 520 (1490)
T TIGR01271 441 VLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSGRISFSPQTSWIMPGTIKDNIIFGLSYDEYRYTS 520 (1490)
T ss_pred ceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEEEEeCCCccCCccHHHHHHhccccchHHHHH
Confidence 48999999999999999999999999999999999998743 356677766543210 000000 0
Q ss_pred -ccc------------------chhccCCCcchhHHHHHHHHHhhCCcEEEEcCCCCHHHHHH---HH-HH---HhcCCe
Q 019702 174 -IGT------------------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA---CR-SI---AERGVM 227 (337)
Q Consensus 174 -~~~------------------~~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~~ld~~~---l~-~~---~~~G~t 227 (337)
+.. ..+...+|||||||++||||+..+|++++||||++++|... +. .+ ..+|.|
T Consensus 521 ~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~~~~t 600 (1490)
T TIGR01271 521 VIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKT 600 (1490)
T ss_pred HHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCe
Confidence 000 01224579999999999999999999999999999999532 11 11 135899
Q ss_pred EEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHH
Q 019702 228 LIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (337)
Q Consensus 228 vi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~ 266 (337)
+|++||+++... .||+++ ++++|+++..|+++++..
T Consensus 601 vilvtH~~~~~~-~ad~ii--~l~~g~i~~~g~~~~l~~ 636 (1490)
T TIGR01271 601 RILVTSKLEHLK-KADKIL--LLHEGVCYFYGTFSELQA 636 (1490)
T ss_pred EEEEeCChHHHH-hCCEEE--EEECCEEEEEcCHHHHHh
Confidence 999999999875 599999 999999999999998875
No 363
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=99.86 E-value=9.7e-20 Score=172.68 Aligned_cols=230 Identities=17% Similarity=0.197 Sum_probs=156.6
Q ss_pred CCCCeeEEEEecCCccEEEEeCccCceeccCCCCCHHHHHHHHHHHhccCC----CcceEecCc---eeEEEEEeeC---
Q 019702 24 KRGQLLEVILDLGRLPEARYLGEFGGKYLRSTEVSVEELEYAQSAVGEFGG----DNRAGIEGT---LHRISAIRSR--- 93 (337)
Q Consensus 24 ~~~~~~ei~l~~g~~~~~~~~g~~~~~~~~~~~~t~~~l~~~~~~~~~~~~----~~~~~~~g~---~~rv~~~~~~--- 93 (337)
+++.++||++..+.+++++..|... ......+|.+++..+++.+..+.+ ..++.+..+ .+|+++....
T Consensus 3 ~d~~v~eI~in~~~~v~v~~~g~~~--~~~~~~~~~~~l~~~~~~l~~~~~~~l~~~~p~~~~~l~~g~Rv~~~~~p~~~ 80 (308)
T TIGR02788 3 DDEDVTEICINRPGEVWVEGPGGWQ--RFDVPDLTFSHLMRLARAIASFSKQSISEENPILSATLPGGERVQIVIPPACE 80 (308)
T ss_pred CCCCcEEEEEcCCCEEEEEECCcEE--EecCccCCHHHHHHHHHHHHHHhCCcccCCCceEEEECCCCeEEEEECCCccc
Confidence 3568999999999999998877642 333346899999999887753321 122233322 2678777632
Q ss_pred -CCcEeeEEEEECCccccchh------------------------------------hhhhcccCCCEEEEEcCCCCcHH
Q 019702 94 -KGAIVGLTCRVGRAVSGHID------------------------------------MVYDLLHYGKSILFVGRPGVGKT 136 (337)
Q Consensus 94 -~g~i~~l~~r~~~~~~~~~~------------------------------------~l~~~v~~g~~v~IiGpnGsGKT 136 (337)
++. .+++|........++ -+++.+..|+.++|+||||||||
T Consensus 81 ~~~~--~i~IRk~~~~~~sl~~l~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~v~~~~~ili~G~tGsGKT 158 (308)
T TIGR02788 81 NDTV--SITIRKPSLVDFSLDDYEEKGFFDTVRAQSGTLSDNDEQLLELLDAGDIKEFLRLAIASRKNIIISGGTGSGKT 158 (308)
T ss_pred CCCc--eEEEECCCCCCCCHHHHHHcCCcccccccccccchhhHHHHHhhhhHHHHHHHHHHhhCCCEEEEECCCCCCHH
Confidence 223 678887653321111 24455778999999999999999
Q ss_pred HHHHHHHccccccCCCeEEEEcCCcccccCCCCcccccccc-hhccCCCcchhHHHHHHHHHhhCCcEEEEcCCCCHHHH
Q 019702 137 TVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTA-RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEA 215 (337)
Q Consensus 137 TLL~~l~gll~~~~~~~i~~v~~~~ei~~~~~~~~~~~~~~-~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~~ld~ 215 (337)
||+++|++++++. .+++++++..|+.... + +.+... .......+.....-.++.+|+++||+|++|||++.+..
T Consensus 159 Tll~al~~~~~~~--~~iv~ied~~El~~~~--~-~~~~l~~~~~~~~~~~~~~~~~l~~~Lr~~pd~ii~gE~r~~e~~ 233 (308)
T TIGR02788 159 TFLKSLVDEIPKD--ERIITIEDTREIFLPH--P-NYVHLFYSKGGQGLAKVTPKDLLQSCLRMRPDRIILGELRGDEAF 233 (308)
T ss_pred HHHHHHHccCCcc--ccEEEEcCccccCCCC--C-CEEEEEecCCCCCcCccCHHHHHHHHhcCCCCeEEEeccCCHHHH
Confidence 9999999999774 5677888777764321 1 111111 11111122344556788999999999999999997655
Q ss_pred HHHHHHHhcCCe-EEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHH
Q 019702 216 HACRSIAERGVM-LIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (337)
Q Consensus 216 ~~l~~~~~~G~t-vi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~ 266 (337)
+++.. ..+|+. ++.|+|+.+... ..+|+. .+..|++...|.+.+.+.
T Consensus 234 ~~l~a-~~~g~~~~i~T~Ha~~~~~-~~~Rl~--~l~~~~~~~~g~~~~~~~ 281 (308)
T TIGR02788 234 DFIRA-VNTGHPGSITTLHAGSPEE-AFEQLA--LMVKSSQAGLGLDFAYIV 281 (308)
T ss_pred HHHHH-HhcCCCeEEEEEeCCCHHH-HHHHHH--HHhhccccccCCCHHHHH
Confidence 55444 457874 699999999554 588888 677788888888887764
No 364
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.86 E-value=1.5e-21 Score=162.53 Aligned_cols=141 Identities=13% Similarity=0.175 Sum_probs=104.8
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccC-------------------CCeEEEE
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEF-------------------QKRVVIV 157 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~-------------------~~~i~~v 157 (337)
++|++++.+.... +.++++.+.+|+++-|+||+|||||||+..+.|.+.++. +++++++
T Consensus 5 l~nvsl~l~g~cL--La~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~GiL 82 (213)
T COG4136 5 LKNVSLRLPGSCL--LANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIGIL 82 (213)
T ss_pred eeeeeecCCCceE--EEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhheeee
Confidence 5688888877655 888999999999999999999999999999999998652 2344444
Q ss_pred cCCcccccCCCCcccc--------ccc-------------------chhccCCCcchhHHHHHHHHHhhCCcEEEEcCCC
Q 019702 158 DTSNEIGGDGDIPHSA--------IGT-------------------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIG 210 (337)
Q Consensus 158 ~~~~ei~~~~~~~~~~--------~~~-------------------~~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~ 210 (337)
.+..-+.....+-++. -+. .+....+||||+.|+++.|+|...|+.+++|||+
T Consensus 83 FQD~lLFphlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla~Pk~lLLDEPF 162 (213)
T COG4136 83 FQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPF 162 (213)
T ss_pred ecccccccccccccceEEecCcccccHHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHHHHhCcceeeeCCch
Confidence 4433221110111110 000 1334567999999999999999999999999999
Q ss_pred CHHHHHH--------HHHHHhcCCeEEEEEcCcchhH
Q 019702 211 TEAEAHA--------CRSIAERGVMLIGTAHGEWLEN 239 (337)
Q Consensus 211 ~~ld~~~--------l~~~~~~G~tvi~t~H~~~~~~ 239 (337)
+.+|... +.++.+.|..++.+|||...+.
T Consensus 163 S~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~Dvp 199 (213)
T COG4136 163 SRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQDVP 199 (213)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCC
Confidence 9999532 4556678999999999988654
No 365
>PTZ00243 ABC transporter; Provisional
Probab=99.86 E-value=1.2e-21 Score=218.51 Aligned_cols=153 Identities=14% Similarity=0.145 Sum_probs=119.9
Q ss_pred chhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCC-----CeEEEEcCCcccccCCCCccc----------c--
Q 019702 111 HIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ-----KRVVIVDTSNEIGGDGDIPHS----------A-- 173 (337)
Q Consensus 111 ~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~-----~~i~~v~~~~ei~~~~~~~~~----------~-- 173 (337)
.++++++.+++|++++|+|||||||||||++|+|++.|+.| +++.|+++...+... .+.++ .
T Consensus 675 iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~~~i~yv~Q~~~l~~~-Tv~enI~~~~~~~~~~~~ 753 (1560)
T PTZ00243 675 LLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAERSIAYVPQQAWIMNA-TVRGNILFFDEEDAARLA 753 (1560)
T ss_pred eEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCeEEEEeCCCccCCC-cHHHHHHcCChhhHHHHH
Confidence 48999999999999999999999999999999999988743 357777776544210 00000 0
Q ss_pred --c--------------cc----chhccCCCcchhHHHHHHHHHhhCCcEEEEcCCCCHHHHHH----HHHH---HhcCC
Q 019702 174 --I--------------GT----ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA----CRSI---AERGV 226 (337)
Q Consensus 174 --~--------------~~----~~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~~ld~~~----l~~~---~~~G~ 226 (337)
+ +. ..+...+|||||||++||||+..+|++++||||++++|... +..+ ...|.
T Consensus 754 ~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~~~~ 833 (1560)
T PTZ00243 754 DAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGK 833 (1560)
T ss_pred HHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhhCCC
Confidence 0 00 02234579999999999999999999999999999999532 2211 23589
Q ss_pred eEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHh
Q 019702 227 MLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (337)
Q Consensus 227 tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~ 267 (337)
|+|++||+.+.+. .||+++ +|++|+++..|++++++..
T Consensus 834 TvIlvTH~~~~~~-~ad~ii--~l~~G~i~~~G~~~~l~~~ 871 (1560)
T PTZ00243 834 TRVLATHQVHVVP-RADYVV--ALGDGRVEFSGSSADFMRT 871 (1560)
T ss_pred EEEEEeCCHHHHH-hCCEEE--EEECCEEEEecCHHHHHhC
Confidence 9999999999874 699999 9999999999999998753
No 366
>PLN03140 ABC transporter G family member; Provisional
Probab=99.85 E-value=1.4e-21 Score=216.17 Aligned_cols=150 Identities=16% Similarity=0.154 Sum_probs=112.7
Q ss_pred chhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHcccccc-CCC----------------eEEEEcCCcccccC-------
Q 019702 111 HIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDE-FQK----------------RVVIVDTSNEIGGD------- 166 (337)
Q Consensus 111 ~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~-~~~----------------~i~~v~~~~ei~~~------- 166 (337)
.++++++.+++|++++|+|||||||||||++|+|...+. ..+ .+.++.|...+...
T Consensus 895 iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV~E~L 974 (1470)
T PLN03140 895 LLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRESL 974 (1470)
T ss_pred EeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccCChHHhhhheEEEccccccCCCCcHHHHH
Confidence 589999999999999999999999999999999987531 112 24455443211100
Q ss_pred -----CCCcc----cc-----------ccc--c--hhc-----cCCCcchhHHHHHHHHHhhCCcEEEEcCCCCHHHH--
Q 019702 167 -----GDIPH----SA-----------IGT--A--RRM-----QVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEA-- 215 (337)
Q Consensus 167 -----~~~~~----~~-----------~~~--~--~~~-----~~~S~g~k~r~~ia~al~~~P~vlilDEp~~~ld~-- 215 (337)
...+. .. ++. . ... .-+|+|||||++||++|+.+|++|++||||+++|.
T Consensus 975 ~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~ 1054 (1470)
T PLN03140 975 IYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1054 (1470)
T ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Confidence 00010 00 000 0 111 34899999999999999999999999999999994
Q ss_pred -----HHHHHHHhcCCeEEEEEcCcc-hhHHhhchHHHHHhcC-ceEEEecCHH
Q 019702 216 -----HACRSIAERGVMLIGTAHGEW-LENIIKNPILSDLIGG-VDTVTLGDEE 262 (337)
Q Consensus 216 -----~~l~~~~~~G~tvi~t~H~~~-~~~~~~d~v~~~ll~~-G~iv~~g~~~ 262 (337)
+.+++++++|.|||+|+|+.+ .+...+|+++ ++++ |+++..|++.
T Consensus 1055 a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vl--lL~~gG~~v~~G~~~ 1106 (1470)
T PLN03140 1055 AAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELL--LMKRGGQVIYSGPLG 1106 (1470)
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEE--EEcCCCEEEEECCcc
Confidence 456677778999999999998 4567899999 8985 8999999975
No 367
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=99.85 E-value=2.6e-21 Score=186.49 Aligned_cols=167 Identities=20% Similarity=0.207 Sum_probs=122.6
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCC------------------CeEEEEc
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ------------------KRVVIVD 158 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~------------------~~i~~v~ 158 (337)
++|+++.|.+..+ .+.+++|.+.+|+.++++||+|+||||++|.|.++..-+.+ ..|++++
T Consensus 540 fsnvtF~Y~p~k~-vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IGVVP 618 (790)
T KOG0056|consen 540 FSNVTFAYDPGKP-VLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIGVVP 618 (790)
T ss_pred EEEeEEecCCCCc-eeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhcCccc
Confidence 5689999987664 69999999999999999999999999999999999865521 2333343
Q ss_pred CCcccccCCC-------Ccc---ccccc------------------c----hhccCCCcchhHHHHHHHHHhhCCcEEEE
Q 019702 159 TSNEIGGDGD-------IPH---SAIGT------------------A----RRMQVPEPSLQHKVMIEAVENHMPEVIIV 206 (337)
Q Consensus 159 ~~~ei~~~~~-------~~~---~~~~~------------------~----~~~~~~S~g~k~r~~ia~al~~~P~vlil 206 (337)
|..-+..+.. .|. ..+.. . ++--.+|||+|||+++||++..+|.+|+|
T Consensus 619 QDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~iIlL 698 (790)
T KOG0056|consen 619 QDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPSIILL 698 (790)
T ss_pred CcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCCcEEEE
Confidence 3221111000 000 00000 0 12224699999999999999999999999
Q ss_pred cCCCCHHHH---HHHHH---HHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHh
Q 019702 207 DEIGTEAEA---HACRS---IAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (337)
Q Consensus 207 DEp~~~ld~---~~l~~---~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~ 267 (337)
||.||.+|. .+++. -...+.|-|++.|.++.+ .-+|.++ ++++|+|++.|..+|+..+
T Consensus 699 DEATSALDT~tER~IQaaL~rlca~RTtIVvAHRLSTi-vnAD~IL--vi~~G~IvErG~HeeLl~r 762 (790)
T KOG0056|consen 699 DEATSALDTNTERAIQAALARLCANRTTIVVAHRLSTI-VNADLIL--VISNGRIVERGRHEELLKR 762 (790)
T ss_pred cchhhhcCCccHHHHHHHHHHHhcCCceEEEeeeehhe-ecccEEE--EEeCCeEeecCcHHHHHhc
Confidence 999999993 22222 124578889999999865 4688899 9999999999999998864
No 368
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.85 E-value=7.6e-21 Score=195.01 Aligned_cols=156 Identities=18% Similarity=0.194 Sum_probs=117.8
Q ss_pred ccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHcccccc--CCCe----------------EEEEcCCcccccC----
Q 019702 109 SGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDE--FQKR----------------VVIVDTSNEIGGD---- 166 (337)
Q Consensus 109 ~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~--~~~~----------------i~~v~~~~ei~~~---- 166 (337)
...+++++..+++|++++|+||+||||||||++|+|..... ..+. ..|+.|..-+...
T Consensus 43 k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~LTV~ 122 (613)
T KOG0061|consen 43 KTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPTLTVR 122 (613)
T ss_pred ceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhheeEEEcccccccccccHH
Confidence 34599999999999999999999999999999999998753 1222 3333332221110
Q ss_pred --------CCCccc----c-----------ccc--c--hhcc-----CCCcchhHHHHHHHHHhhCCcEEEEcCCCCHHH
Q 019702 167 --------GDIPHS----A-----------IGT--A--RRMQ-----VPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAE 214 (337)
Q Consensus 167 --------~~~~~~----~-----------~~~--~--~~~~-----~~S~g~k~r~~ia~al~~~P~vlilDEp~~~ld 214 (337)
...|.. . ++. . ...+ -+|||+++|+++|.-+.++|.+|++||||+++|
T Consensus 123 EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPTSGLD 202 (613)
T KOG0061|consen 123 ETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSGLD 202 (613)
T ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCCCEEEecCCCCCcc
Confidence 011110 0 000 0 1111 269999999999999999999999999999999
Q ss_pred -------HHHHHHHHhcCCeEEEEEcCcc-hhHHhhchHHHHHhcCceEEEecCHHHHHH
Q 019702 215 -------AHACRSIAERGVMLIGTAHGEW-LENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (337)
Q Consensus 215 -------~~~l~~~~~~G~tvi~t~H~~~-~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~ 266 (337)
++.+++++++|.|||+|-|..+ .+-..-|+++ ++..|+.++.|++++...
T Consensus 203 S~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~--lLs~G~~vy~G~~~~~~~ 260 (613)
T KOG0061|consen 203 SFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLL--LLSEGEVVYSGSPRELLE 260 (613)
T ss_pred hhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhh--hhcCCcEEEecCHHHHHH
Confidence 4678888888999999999987 4556789999 999999999999987654
No 369
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.85 E-value=2.7e-21 Score=164.00 Aligned_cols=136 Identities=18% Similarity=0.249 Sum_probs=105.1
Q ss_pred cchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEcCCccc------------------ccC----C
Q 019702 110 GHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEI------------------GGD----G 167 (337)
Q Consensus 110 ~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~~~~ei------------------~~~----~ 167 (337)
..++++++.++.||++.+-||+||||||+||+|-+-+.|+ .++|.+--+...+ ++. .
T Consensus 25 pV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d-~G~I~v~H~g~~vdl~~a~pr~vl~vRr~TiGyVSQFLR 103 (235)
T COG4778 25 PVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPD-EGQILVRHEGEWVDLVTAEPREVLEVRRTTIGYVSQFLR 103 (235)
T ss_pred eeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCC-CceEEEEeCcchhhhhccChHHHHHHHHhhhHHHHHHHH
Confidence 4588999999999999999999999999999999999998 4555543222111 110 0
Q ss_pred CCccc---cc--------cc------------c-----------hhccCCCcchhHHHHHHHHHhhCCcEEEEcCCCCHH
Q 019702 168 DIPHS---AI--------GT------------A-----------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEA 213 (337)
Q Consensus 168 ~~~~~---~~--------~~------------~-----------~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~~l 213 (337)
.+|.- .+ +. + -.....|||+|||+.|||.+..+-.||+|||||+.+
T Consensus 104 viPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQRVNIaRgfivd~pILLLDEPTasL 183 (235)
T COG4778 104 VIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASL 183 (235)
T ss_pred hccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchheehhhhhhhhccCceEEecCCcccc
Confidence 01110 00 00 0 112345999999999999999999999999999999
Q ss_pred H-------HHHHHHHHhcCCeEEEEEcCcchhHHhhchHH
Q 019702 214 E-------AHACRSIAERGVMLIGTAHGEWLENIIKNPIL 246 (337)
Q Consensus 214 d-------~~~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~ 246 (337)
| ++++.+.+.+|..++.+-||.+.-+.+|||.+
T Consensus 184 Da~Nr~vVveli~e~Ka~GaAlvGIFHDeevre~vadR~~ 223 (235)
T COG4778 184 DATNRAVVVELIREAKARGAALVGIFHDEEVREAVADRLL 223 (235)
T ss_pred cccchHHHHHHHHHHHhcCceEEEeeccHHHHHHHhhhee
Confidence 9 47788888899999999999999999999988
No 370
>PRK13764 ATPase; Provisional
Probab=99.84 E-value=1.3e-19 Score=183.43 Aligned_cols=220 Identities=21% Similarity=0.240 Sum_probs=148.0
Q ss_pred CCeeEEEEecCCccEEEEe--CccCceeccCCCCCHHHHHHHHHHHhcc---C-----C-Ccce--EecCceeEEEEEee
Q 019702 26 GQLLEVILDLGRLPEARYL--GEFGGKYLRSTEVSVEELEYAQSAVGEF---G-----G-DNRA--GIEGTLHRISAIRS 92 (337)
Q Consensus 26 ~~~~ei~l~~g~~~~~~~~--g~~~~~~~~~~~~t~~~l~~~~~~~~~~---~-----~-~~~~--~~~g~~~rv~~~~~ 92 (337)
.++|||||..|.||++|.. |.+....+...++|.++++.+++.+... . + +... ......+|++++..
T Consensus 142 ~~asdvhL~~g~pp~~r~~~~G~~~l~~i~~~~lt~~~l~~la~~i~~~~~~~~~~~~e~~~p~~~~~~~~~~Rv~i~~~ 221 (602)
T PRK13764 142 EETMSVHLKEGVPPMAKKGKPGEWKLVKIRDEPLTEEELEEIAREILERAKRDPDGFIEIERRGATVVQLGNYRIVIARP 221 (602)
T ss_pred CCceeEEEcCCCCcEEEEecCCceEEEECCCCCCCHHHHHHHHHHHHHHhcccccccceeecCcccccCCCCEEEEEEcc
Confidence 5799999999999999987 4332235666789999999988877211 1 1 1110 11112589999987
Q ss_pred CCCcEeeEEEEEC-Cccccchhhhh-------hcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEcCCcccc
Q 019702 93 RKGAIVGLTCRVG-RAVSGHIDMVY-------DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIG 164 (337)
Q Consensus 93 ~~g~i~~l~~r~~-~~~~~~~~~l~-------~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~~~~ei~ 164 (337)
.... +++++.- +.....++.+. .....++.++|+||+||||||++++|+..++.. +..|.+++++.|+.
T Consensus 222 p~~~--~~~itirrp~~~~~Le~l~l~~~l~~~l~~~~~~ILIsG~TGSGKTTll~AL~~~i~~~-~riV~TiEDp~El~ 298 (602)
T PRK13764 222 PFSD--GIEITAVRPVVKLSLEDYNLSEKLKERLEERAEGILIAGAPGAGKSTFAQALAEFYADM-GKIVKTMESPRDLQ 298 (602)
T ss_pred Cccc--cEEEEEEccCCCCCHHHhCCCHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHHHHhhC-CCEEEEECCCcccc
Confidence 6644 4444421 11222233322 224557789999999999999999999999753 56677999999885
Q ss_pred cCCCCcccccccchhccCCCcchhHHHHHHHHHhhCCcEEEEcCCCCHHHHHHHHHHHhcCCeEEEEEcCc---------
Q 019702 165 GDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRSIAERGVMLIGTAHGE--------- 235 (337)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~~ld~~~l~~~~~~G~tvi~t~H~~--------- 235 (337)
....+.+ +....+.. ......+|+++||+|++||++..++++++..++..|+.++.|.|+.
T Consensus 299 ~~~~i~q--------~~~~~~~~--~~~~~~lLR~rPD~IivGEiRd~Et~~~~~~l~~ag~GvigTlHA~sa~~Ai~Rl 368 (602)
T PRK13764 299 VPPEITQ--------YSKLEGSM--EETADILLLVRPDYTIYDEMRKTEDFKIFADMRLAGVGMVGVVHATRPIDAIQRF 368 (602)
T ss_pred CCCcceE--------EeeccccH--HHHHHHHHhhCCCEEEECCCCCHHHHHHHHHHHHcCCeEEEEECCCCHHHHHHHH
Confidence 4211111 11111121 2233455899999999999999999999888888899999999954
Q ss_pred ------chhHHhhchHHHHHhcCceE--EEecC
Q 019702 236 ------WLENIIKNPILSDLIGGVDT--VTLGD 260 (337)
Q Consensus 236 ------~~~~~~~d~v~~~ll~~G~i--v~~g~ 260 (337)
..+..++|.++ .++.|++ ++..+
T Consensus 369 ~~~v~lg~i~~iID~IV--~I~~G~I~~v~~~~ 399 (602)
T PRK13764 369 IGRVELGMIPQIVDTVI--FIEDGEVSKVYDLE 399 (602)
T ss_pred HhhhhhchHHHhhcEEE--EEeCCEEEEEEeee
Confidence 44444566666 7778887 54444
No 371
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.84 E-value=4.9e-21 Score=212.01 Aligned_cols=154 Identities=12% Similarity=0.092 Sum_probs=115.1
Q ss_pred chhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHcccc----ccC-----------------CCeEEEEcCCcccccC---
Q 019702 111 HIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLS----DEF-----------------QKRVVIVDTSNEIGGD--- 166 (337)
Q Consensus 111 ~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~----~~~-----------------~~~i~~v~~~~ei~~~--- 166 (337)
.++++++.+++|++++|+|||||||||||++|+|+.. |.. .+.+.++.+.......
T Consensus 76 iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~lTV 155 (1394)
T TIGR00956 76 ILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTV 155 (1394)
T ss_pred eeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCCCH
Confidence 4889999999999999999999999999999999863 221 1124455443211100
Q ss_pred ----------C-------CCcccc-----ccc------c-----h-----hccCCCcchhHHHHHHHHHhhCCcEEEEcC
Q 019702 167 ----------G-------DIPHSA-----IGT------A-----R-----RMQVPEPSLQHKVMIEAVENHMPEVIIVDE 208 (337)
Q Consensus 167 ----------~-------~~~~~~-----~~~------~-----~-----~~~~~S~g~k~r~~ia~al~~~P~vlilDE 208 (337)
. ...... ... + . ...-+|||||||++||++++.+|+++++||
T Consensus 156 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vlllDE 235 (1394)
T TIGR00956 156 GETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDN 235 (1394)
T ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEEEeC
Confidence 0 000000 000 0 0 112379999999999999999999999999
Q ss_pred CCCHHHH-------HHHHHHHh-cCCeEEEEEcCc-chhHHhhchHHHHHhcCceEEEecCHHHHHH
Q 019702 209 IGTEAEA-------HACRSIAE-RGVMLIGTAHGE-WLENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (337)
Q Consensus 209 p~~~ld~-------~~l~~~~~-~G~tvi~t~H~~-~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~ 266 (337)
||+++|. +.++++++ .|.|+|+++|+. +.+..++|+++ ++++|+++..|+++++..
T Consensus 236 PTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~--~L~~G~iv~~G~~~~~~~ 300 (1394)
T TIGR00956 236 ATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVI--VLYEGYQIYFGPADKAKQ 300 (1394)
T ss_pred CCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEE--EEeCCeEEEECCHHHHHH
Confidence 9999994 45666665 489999999996 57778999999 999999999999988754
No 372
>PLN03140 ABC transporter G family member; Provisional
Probab=99.84 E-value=4.1e-21 Score=212.45 Aligned_cols=155 Identities=14% Similarity=0.168 Sum_probs=117.6
Q ss_pred cchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHcccccc---C---------------CCeEEEEcCCccccc------
Q 019702 110 GHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDE---F---------------QKRVVIVDTSNEIGG------ 165 (337)
Q Consensus 110 ~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~---~---------------~~~i~~v~~~~ei~~------ 165 (337)
..++++++.+++|++++|+|||||||||||++|+|.++|+ . .+.+.|+.+......
T Consensus 179 ~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~E 258 (1470)
T PLN03140 179 TILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVKE 258 (1470)
T ss_pred eeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcHHH
Confidence 3599999999999999999999999999999999999774 1 123455554321110
Q ss_pred -------CCCCc-----------c---------cc-------------------------cccc---------hhccCCC
Q 019702 166 -------DGDIP-----------H---------SA-------------------------IGTA---------RRMQVPE 184 (337)
Q Consensus 166 -------~~~~~-----------~---------~~-------------------------~~~~---------~~~~~~S 184 (337)
..... . .. ++.. ....-+|
T Consensus 259 tL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rglS 338 (1470)
T PLN03140 259 TLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGIS 338 (1470)
T ss_pred HHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCCC
Confidence 00000 0 00 0000 1123479
Q ss_pred cchhHHHHHHHHHhhCCcEEEEcCCCCHHHH-------HHHHHHHh-cCCeEEEEEcCc-chhHHhhchHHHHHhcCceE
Q 019702 185 PSLQHKVMIEAVENHMPEVIIVDEIGTEAEA-------HACRSIAE-RGVMLIGTAHGE-WLENIIKNPILSDLIGGVDT 255 (337)
Q Consensus 185 ~g~k~r~~ia~al~~~P~vlilDEp~~~ld~-------~~l~~~~~-~G~tvi~t~H~~-~~~~~~~d~v~~~ll~~G~i 255 (337)
||||||+.||++++.+|+++++||||+++|. +.++++++ .|.|+|+++|+. .++..++|+++ ++++|++
T Consensus 339 GGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vi--lL~~G~i 416 (1470)
T PLN03140 339 GGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDII--LLSEGQI 416 (1470)
T ss_pred cccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEE--EeeCceE
Confidence 9999999999999999999999999999994 45666655 589999999986 47778999999 9999999
Q ss_pred EEecCHHHHHH
Q 019702 256 VTLGDEEARAR 266 (337)
Q Consensus 256 v~~g~~~~~~~ 266 (337)
+..|+++++..
T Consensus 417 vy~G~~~~~~~ 427 (1470)
T PLN03140 417 VYQGPRDHILE 427 (1470)
T ss_pred EEeCCHHHHHH
Confidence 99999988764
No 373
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.83 E-value=1.5e-20 Score=173.68 Aligned_cols=78 Identities=14% Similarity=0.164 Sum_probs=68.0
Q ss_pred cCCCcchhHHHHHHHHHhhC---CcEEEEcCCCCHHHH-------HHHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHh
Q 019702 181 QVPEPSLQHKVMIEAVENHM---PEVIIVDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLI 250 (337)
Q Consensus 181 ~~~S~g~k~r~~ia~al~~~---P~vlilDEp~~~ld~-------~~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll 250 (337)
..+|+||+||+++|+++..+ |+++++||||+++|. +.+.++.+.|.|+|+++|+++++. .||+++ .+
T Consensus 168 ~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~~i~-~aD~ii--~L 244 (261)
T cd03271 168 TTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDVIK-CADWII--DL 244 (261)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-hCCEEE--Ee
Confidence 34699999999999999996 799999999999994 345566677999999999999875 699999 88
Q ss_pred ------cCceEEEecCH
Q 019702 251 ------GGVDTVTLGDE 261 (337)
Q Consensus 251 ------~~G~iv~~g~~ 261 (337)
++|++++.|+|
T Consensus 245 gp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 245 GPEGGDGGGQVVASGTP 261 (261)
T ss_pred cCCcCCCCCEEEEeCCC
Confidence 78999999875
No 374
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.82 E-value=2.2e-20 Score=181.32 Aligned_cols=165 Identities=16% Similarity=0.182 Sum_probs=113.3
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHcc---ccccCCCeEEEEc---------------
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARV---LSDEFQKRVVIVD--------------- 158 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gl---l~~~~~~~i~~v~--------------- 158 (337)
+.++++.|+.... +..-++.+..|..++++|+||+|||||||+|+.- .-|.. ..+...+
T Consensus 83 ~~~fdLa~G~k~L--L~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~~~v~~f~ve-qE~~g~~t~~~~~~l~~D~~~~ 159 (582)
T KOG0062|consen 83 IDNFDLAYGGKIL--LNKANLTLSRGRRYGLVGRNGIGKSTLLRAIANGQVSGFHVE-QEVRGDDTEALQSVLESDTERL 159 (582)
T ss_pred eeeeeeeecchhh--hcCCceeeecccccceeCCCCCcHHHHHHHHHhcCcCccCch-hheeccchHHHhhhhhccHHHH
Confidence 4478888887766 8888889999999999999999999999999981 11110 0110000
Q ss_pred ----CCcccccCCCCc--cc-c---cc-----cchhccCCCcchhHHHHHHHHHhhCCcEEEEcCCCCHHHHHHHH---H
Q 019702 159 ----TSNEIGGDGDIP--HS-A---IG-----TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR---S 220 (337)
Q Consensus 159 ----~~~ei~~~~~~~--~~-~---~~-----~~~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~~ld~~~l~---~ 220 (337)
+..++....... .. . ++ ..+.+..+|||.|.|+++|||+..+||+|+|||||+.||+.++. .
T Consensus 160 dfl~~e~~l~~~~~l~ei~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLDv~av~WLe~ 239 (582)
T KOG0062|consen 160 DFLAEEKELLAGLTLEEIYDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVVAVAWLEN 239 (582)
T ss_pred HHHHhhhhhhccchHHHHHHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEeecCCcccchhHHHHHHHH
Confidence 000000000000 00 0 00 01345568999999999999999999999999999999976544 3
Q ss_pred H-HhcCCeEEEEEcCcchhHHhhchHHHHHhcCceE-EEecCHHHHHH
Q 019702 221 I-AERGVMLIGTAHGEWLENIIKNPILSDLIGGVDT-VTLGDEEARAR 266 (337)
Q Consensus 221 ~-~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~i-v~~g~~~~~~~ 266 (337)
+ ...+.|+|++|||.++.+.+|..++ =.++-++ .+.|+.++...
T Consensus 240 yL~t~~~T~liVSHDr~FLn~V~tdII--H~~~~kL~~YkGN~~~Fvk 285 (582)
T KOG0062|consen 240 YLQTWKITSLIVSHDRNFLNTVCTDII--HLENLKLDYYKGNYSQFVK 285 (582)
T ss_pred HHhhCCceEEEEeccHHHHHHHHHHHH--HHhhhhhhhhcCcHHHHHH
Confidence 3 3447899999999999999999998 3444443 44577766554
No 375
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.82 E-value=5.5e-20 Score=179.46 Aligned_cols=164 Identities=17% Similarity=0.180 Sum_probs=121.1
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEcCCcccccC----------
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGD---------- 166 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~~~~ei~~~---------- 166 (337)
+.++++.|.+... +.+..+.+.+|+.++|+|+|||||||+|++|.|-..|. ..++.+.....++...
T Consensus 78 ~~sls~s~~g~~l--~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~-p~~~d~y~ls~e~~ps~~~av~~v~~ 154 (614)
T KOG0927|consen 78 IESLSLSFHGVEL--IKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPI-PEHIDFYLLSREIEPSEKQAVQAVVM 154 (614)
T ss_pred eeeeeeccCCcee--eeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCC-CcccchhhhcccCCCchHHHHHHHhh
Confidence 7799999987776 89999999999999999999999999999999998876 3344332222221100
Q ss_pred -----------------CCCcc---ccc--------------------------c-----cchhccCCCcchhHHHHHHH
Q 019702 167 -----------------GDIPH---SAI--------------------------G-----TARRMQVPEPSLQHKVMIEA 195 (337)
Q Consensus 167 -----------------~~~~~---~~~--------------------------~-----~~~~~~~~S~g~k~r~~ia~ 195 (337)
..... ... + ..+.+.-+|+|++.|+++|+
T Consensus 155 ~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~SgGwrmR~aLAr 234 (614)
T KOG0927|consen 155 ETDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSGGWRMRAALAR 234 (614)
T ss_pred hhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccCchHHHHHHHHH
Confidence 00000 000 0 01334456999999999999
Q ss_pred HHhhCCcEEEEcCCCCHHHHHHHHHH----HhcCC-eEEEEEcCcchhHHhhchHHHHHhcCce-EEEecCHHHHH
Q 019702 196 VENHMPEVIIVDEIGTEAEAHACRSI----AERGV-MLIGTAHGEWLENIIKNPILSDLIGGVD-TVTLGDEEARA 265 (337)
Q Consensus 196 al~~~P~vlilDEp~~~ld~~~l~~~----~~~G~-tvi~t~H~~~~~~~~~d~v~~~ll~~G~-iv~~g~~~~~~ 265 (337)
+|..+|++|+|||||++||.+++..+ ++... ++++++|+.++...+|..++ =+..++ +.+.|+.+...
T Consensus 235 ~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~~~lVi~sh~QDfln~vCT~Ii--~l~~kkl~~y~Gnydqy~ 308 (614)
T KOG0927|consen 235 ALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDRIILVIVSHSQDFLNGVCTNII--HLDNKKLIYYEGNYDQYV 308 (614)
T ss_pred HHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccCceEEEEecchhhhhhHhhhhh--eecccceeeecCCHHHHh
Confidence 99999999999999999998876433 34444 89999999999999999999 567777 45556555433
No 376
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=4.5e-20 Score=158.98 Aligned_cols=135 Identities=21% Similarity=0.240 Sum_probs=96.7
Q ss_pred eEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEcCCcc-----c-------ccC
Q 019702 99 GLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNE-----I-------GGD 166 (337)
Q Consensus 99 ~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~~~~e-----i-------~~~ 166 (337)
+++.+-+.... +.+++|.+.+|+.+-|.||||||||||||+|+|++.|+ .++|.+-..... + +..
T Consensus 7 ~L~~~R~e~~l--f~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~-~G~v~~~~~~i~~~~~~~~~~l~yLGH~ 83 (209)
T COG4133 7 NLSCERGERTL--FSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPD-AGEVYWQGEPIQNVRESYHQALLYLGHQ 83 (209)
T ss_pred hhhhccCccee--ecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCC-CCeEEecCCCCccchhhHHHHHHHhhcc
Confidence 56665555444 88999999999999999999999999999999999998 566665432211 1 000
Q ss_pred CCCc--------------------cccccc-c----------hhccCCCcchhHHHHHHHHHhhCCcEEEEcCCCCHHHH
Q 019702 167 GDIP--------------------HSAIGT-A----------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEA 215 (337)
Q Consensus 167 ~~~~--------------------~~~~~~-~----------~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~~ld~ 215 (337)
.++. ...+.. . ..+..+|.|||+|++||+-....+++.|||||++++|.
T Consensus 84 ~giK~eLTa~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pLWiLDEP~taLDk 163 (209)
T COG4133 84 PGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDK 163 (209)
T ss_pred ccccchhhHHHHHHHHHHHhCCCchhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCCCceeecCcccccCH
Confidence 0000 000000 0 12334699999999999999999999999999999995
Q ss_pred HH-------HHHHHhcCCeEEEEEcCcc
Q 019702 216 HA-------CRSIAERGVMLIGTAHGEW 236 (337)
Q Consensus 216 ~~-------l~~~~~~G~tvi~t~H~~~ 236 (337)
+. +..-+.+|-.||.|||..-
T Consensus 164 ~g~a~l~~l~~~H~~~GGiVllttHq~l 191 (209)
T COG4133 164 EGVALLTALMAAHAAQGGIVLLTTHQPL 191 (209)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEecCCcc
Confidence 32 2222467888999999865
No 377
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=1.4e-19 Score=172.17 Aligned_cols=166 Identities=19% Similarity=0.253 Sum_probs=123.7
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEcCCcc-c------ccCCCC
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNE-I------GGDGDI 169 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~~~~e-i------~~~~~~ 169 (337)
+.++++.|....+ .+.++++.+++|+.++++||+|+||||+++.|-+++.++. +.|.+..+... + ...+.+
T Consensus 265 F~~V~F~y~~~r~-iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~s-G~I~id~qdir~vtq~slR~aIg~V 342 (497)
T COG5265 265 FINVSFAYDPRRP-ILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNS-GSITIDGQDIRDVTQQSLRRAIGIV 342 (497)
T ss_pred EEEEEeeccccch-hhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcC-ceEEEcchhHHHhHHHHHHHHhCcC
Confidence 5588899865543 4899999999999999999999999999999999998873 44433222110 0 000111
Q ss_pred ccccc----------------------c----------------------cchhccCCCcchhHHHHHHHHHhhCCcEEE
Q 019702 170 PHSAI----------------------G----------------------TARRMQVPEPSLQHKVMIEAVENHMPEVII 205 (337)
Q Consensus 170 ~~~~~----------------------~----------------------~~~~~~~~S~g~k~r~~ia~al~~~P~vli 205 (337)
|+... . ...+.-.+|||+|||+++||++..+|.+++
T Consensus 343 PQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk~p~il~ 422 (497)
T COG5265 343 PQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILI 422 (497)
T ss_pred cccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHhcCCCEEE
Confidence 21100 0 002222469999999999999999999999
Q ss_pred EcCCCCHHHHH---HHH---HHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHh
Q 019702 206 VDEIGTEAEAH---ACR---SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (337)
Q Consensus 206 lDEp~~~ld~~---~l~---~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~ 267 (337)
+||.||.+|.. ++. .....|+|-+++.|-++.+ .-+|.++ ++++|+|++.|+.++++..
T Consensus 423 ~deatsaldt~te~~iq~~l~~~~~~rttlviahrlsti-~~adeii--vl~~g~i~erg~h~~ll~~ 487 (497)
T COG5265 423 LDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTI-IDADEII--VLDNGRIVERGTHEELLAA 487 (497)
T ss_pred EehhhhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhhc-cCCceEE--EeeCCEEEecCcHHHHHHc
Confidence 99999999942 222 2235799999999999865 4588999 9999999999999998874
No 378
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.80 E-value=5.9e-20 Score=163.36 Aligned_cols=130 Identities=13% Similarity=0.156 Sum_probs=90.4
Q ss_pred hhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccC------------------------CCeEEEEcCCcccccCCC
Q 019702 113 DMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEF------------------------QKRVVIVDTSNEIGGDGD 168 (337)
Q Consensus 113 ~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~------------------------~~~i~~v~~~~ei~~~~~ 168 (337)
+.+++.+.+| +++|+||||||||||+++|++++.+.. ...+.++.+.....+..
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~~~~- 91 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGRYSI- 91 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCceeE-
Confidence 4566778888 999999999999999999999975431 12334444332221100
Q ss_pred Ccccccc--------cchhccCCCcchhHHHHHHHHHh----hCCcEEEEcCCCCHHHHH-------HHHHHHhcCCeEE
Q 019702 169 IPHSAIG--------TARRMQVPEPSLQHKVMIEAVEN----HMPEVIIVDEIGTEAEAH-------ACRSIAERGVMLI 229 (337)
Q Consensus 169 ~~~~~~~--------~~~~~~~~S~g~k~r~~ia~al~----~~P~vlilDEp~~~ld~~-------~l~~~~~~G~tvi 229 (337)
.+...+. .......+|+||+||+++|++++ ..|+++++|||++++|.. .+.++. ++.+||
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~~~~l~~~l~~~~-~~~tiI 170 (197)
T cd03278 92 ISQGDVSEIIEAPGKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFARLLKEFS-KETQFI 170 (197)
T ss_pred EehhhHHHHHhCCCccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-cCCEEE
Confidence 0000000 01334567999999999999997 456999999999999953 333433 368999
Q ss_pred EEEcCcchhHHhhchHH
Q 019702 230 GTAHGEWLENIIKNPIL 246 (337)
Q Consensus 230 ~t~H~~~~~~~~~d~v~ 246 (337)
++||+++++ .+||+++
T Consensus 171 iitH~~~~~-~~~d~v~ 186 (197)
T cd03278 171 VITHRKGTM-EAADRLY 186 (197)
T ss_pred EEECCHHHH-hhcceEE
Confidence 999999876 4799888
No 379
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.80 E-value=2.3e-19 Score=193.65 Aligned_cols=167 Identities=14% Similarity=0.119 Sum_probs=128.2
Q ss_pred EeeEEEEECCc-cccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCC-----CeEEEEcCCcccccCCCCc
Q 019702 97 IVGLTCRVGRA-VSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ-----KRVVIVDTSNEIGGDGDIP 170 (337)
Q Consensus 97 i~~l~~r~~~~-~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~-----~~i~~v~~~~ei~~~~~~~ 170 (337)
+++.++..... ....++++++.+++|+.++|+||.|||||+||.+|.|.++...| +.+.|++|.+-+... .+.
T Consensus 521 i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gsiaYv~Q~pWI~ng-Tvr 599 (1381)
T KOG0054|consen 521 IKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGSVAYVPQQPWIQNG-TVR 599 (1381)
T ss_pred EeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCeEEEeccccHhhCC-cHH
Confidence 45677777653 22379999999999999999999999999999999999987643 567788776544221 111
Q ss_pred cccccc--------------------------------chhccCCCcchhHHHHHHHHHhhCCcEEEEcCCCCHHHHHH-
Q 019702 171 HSAIGT--------------------------------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA- 217 (337)
Q Consensus 171 ~~~~~~--------------------------------~~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~~ld~~~- 217 (337)
++.+.. -++--.+|||||||+++|||..++.|+.+||.|.++.|...
T Consensus 600 eNILFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg 679 (1381)
T KOG0054|consen 600 ENILFGSPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVG 679 (1381)
T ss_pred HhhhcCccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhh
Confidence 111100 01222469999999999999999999999999999999532
Q ss_pred ---HH---HHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHh
Q 019702 218 ---CR---SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (337)
Q Consensus 218 ---l~---~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~ 267 (337)
+. .-.-+++|+|.+||..... ..+|.++ +|++|+++..|+.+++.+.
T Consensus 680 ~~if~~ci~~~L~~KT~ILVTHql~~L-~~ad~Ii--vl~~G~I~~~Gty~el~~~ 732 (1381)
T KOG0054|consen 680 KHIFEECIRGLLRGKTVILVTHQLQFL-PHADQII--VLKDGKIVESGTYEELLKS 732 (1381)
T ss_pred HHHHHHHHHhhhcCCEEEEEeCchhhh-hhCCEEE--EecCCeEecccCHHHHHhc
Confidence 22 2234579999999987755 5799999 9999999999999999863
No 380
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.80 E-value=4.6e-20 Score=157.25 Aligned_cols=151 Identities=15% Similarity=0.172 Sum_probs=113.0
Q ss_pred hhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEcCCc------ccc-------------cCC-----
Q 019702 112 IDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSN------EIG-------------GDG----- 167 (337)
Q Consensus 112 ~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~~~~------ei~-------------~~~----- 167 (337)
+-.++..+..|+++-++|||||||||||..++|+++-. +.|.+-..+- |++ +..
T Consensus 15 L~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~~~s--Gsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV~~Y 92 (248)
T COG4138 15 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGS--GSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPVWHY 92 (248)
T ss_pred ccccccccccceEEEEECCCCccHHHHHHHHhCCCCCC--ceEEECCcchhHHhHhHHHHHHHHHhhccCCcchhhhhhh
Confidence 55778889999999999999999999999999998653 4444322211 110 000
Q ss_pred ---CCcccccc---------------cchhccCCCcchhHHHHHHHHHhh-----C--CcEEEEcCCCCHHHH-------
Q 019702 168 ---DIPHSAIG---------------TARRMQVPEPSLQHKVMIEAVENH-----M--PEVIIVDEIGTEAEA------- 215 (337)
Q Consensus 168 ---~~~~~~~~---------------~~~~~~~~S~g~k~r~~ia~al~~-----~--P~vlilDEp~~~ld~------- 215 (337)
..|..... .-+...-+|||+.||+-+|+...+ + .++|++|||.+++|+
T Consensus 93 L~L~qP~~~~a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aLd 172 (248)
T COG4138 93 LTLHQPDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALD 172 (248)
T ss_pred hhhcCchHHHHHHHHHHHhhhcccchhhhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCcchhHHHHHHHH
Confidence 00100000 012344579999999999887653 3 358999999999995
Q ss_pred HHHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHH
Q 019702 216 HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (337)
Q Consensus 216 ~~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~ 266 (337)
..+..++.+|.+||+++||++---.-+++++ ++.+|+++..|..+++++
T Consensus 173 rll~~~c~~G~~vims~HDLNhTLrhA~~~w--LL~rG~l~~~G~~~eVlt 221 (248)
T COG4138 173 RLLSALCQQGLAIVMSSHDLNHTLRHAHRAW--LLKRGKLLASGRREEVLT 221 (248)
T ss_pred HHHHHHHhCCcEEEEeccchhhHHHHHHHHH--HHhcCeEEeecchhhhcC
Confidence 3466778899999999999998889999999 999999999999999886
No 381
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.79 E-value=4.5e-19 Score=191.34 Aligned_cols=167 Identities=13% Similarity=0.168 Sum_probs=128.2
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCC------------------CeEEEEc
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ------------------KRVVIVD 158 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~------------------~~i~~v~ 158 (337)
++|++.||.+..+.+++++++.+++||.+||+|.+|||||||+.+|-++..|..| .++.+++
T Consensus 1141 f~~~~~RYrp~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIP 1220 (1381)
T KOG0054|consen 1141 FEDLSLRYRPNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIP 1220 (1381)
T ss_pred EEEeEEEeCCCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCeeeC
Confidence 6699999998877789999999999999999999999999999999999988622 2333444
Q ss_pred CCcccccCCCCccc----------cccc-c---------------------hhccCCCcchhHHHHHHHHHhhCCcEEEE
Q 019702 159 TSNEIGGDGDIPHS----------AIGT-A---------------------RRMQVPEPSLQHKVMIEAVENHMPEVIIV 206 (337)
Q Consensus 159 ~~~ei~~~~~~~~~----------~~~~-~---------------------~~~~~~S~g~k~r~~ia~al~~~P~vlil 206 (337)
|.+-+. .+.+..+ .+.. . ..-..+|-||||-+++|||+..+.+||+|
T Consensus 1221 QdPvLF-sGTvR~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvL 1299 (1381)
T KOG0054|consen 1221 QDPVLF-SGTVRFNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVL 1299 (1381)
T ss_pred CCCcee-cCccccccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCEEEE
Confidence 443321 1111111 0000 0 11123588999999999999999999999
Q ss_pred cCCCCHHHHH---HHHHH-Hh--cCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHh
Q 019702 207 DEIGTEAEAH---ACRSI-AE--RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (337)
Q Consensus 207 DEp~~~ld~~---~l~~~-~~--~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~ 267 (337)
||.|++.|.+ .+++. ++ .+.||+.+.|..+.+ .=||+|+ +|+.|++++.|+|++++.+
T Consensus 1300 DEATAsVD~~TD~lIQ~tIR~~F~dcTVltIAHRl~TV-md~DrVl--Vld~G~v~EfdsP~~Ll~~ 1363 (1381)
T KOG0054|consen 1300 DEATASVDPETDALIQKTIREEFKDCTVLTIAHRLNTV-MDSDRVL--VLDAGRVVEFDSPAELLSD 1363 (1381)
T ss_pred ecccccCChHHHHHHHHHHHHHhcCCeEEEEeeccchh-hhcCeEE--EeeCCeEeecCChHHHHhC
Confidence 9999998853 23222 22 378999999999966 4699999 9999999999999999875
No 382
>PRK10436 hypothetical protein; Provisional
Probab=99.79 E-value=1.4e-17 Score=164.95 Aligned_cols=201 Identities=21% Similarity=0.249 Sum_probs=144.0
Q ss_pred CCCeeEEEEec---CCccEEEEeCccCceeccCCCCCHHHHHHHHHHHh----------ccCCC--cceEecCc--eeEE
Q 019702 25 RGQLLEVILDL---GRLPEARYLGEFGGKYLRSTEVSVEELEYAQSAVG----------EFGGD--NRAGIEGT--LHRI 87 (337)
Q Consensus 25 ~~~~~ei~l~~---g~~~~~~~~g~~~~~~~~~~~~t~~~l~~~~~~~~----------~~~~~--~~~~~~g~--~~rv 87 (337)
..++||||+.. +.++.+|++|.+. .+.. +..+....++.++. +...| +++.+.|. .+|+
T Consensus 97 ~~~ASDIHi~p~~~~~~vr~RidG~l~--~~~~--~~~~~~~~l~~~ik~~a~ld~~e~r~pQdG~~~~~~~~~~~~~Rv 172 (462)
T PRK10436 97 QKRASDIHFEPAQNHYRIRLRIDGVLH--PLPD--PSPELGAALTARLKVLGNLDIAERRLPQDGQFTVELAGNAYSFRI 172 (462)
T ss_pred HcCCceEEEEEcCCceEEEEEECCEEE--EeCC--CChhHHHHHHHHHHHhCCChHHHHhccccccEEEEECCEEEEEEE
Confidence 36799999974 5689999999874 4433 33444444443331 11224 34445564 4899
Q ss_pred EEEeeCCCcEeeEEEEECCccc--cchhhhh----------hcc-cCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeE
Q 019702 88 SAIRSRKGAIVGLTCRVGRAVS--GHIDMVY----------DLL-HYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRV 154 (337)
Q Consensus 88 ~~~~~~~g~i~~l~~r~~~~~~--~~~~~l~----------~~v-~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i 154 (337)
+.+....|. .+++|...... ..++.+. ..+ .++++++|.||+||||||+|.++...+... ..+|
T Consensus 173 s~~p~~~Ge--~vvlRll~~~~~~~~L~~LG~~~~~~~~l~~~~~~~~GliLvtGpTGSGKTTtL~a~l~~~~~~-~~~i 249 (462)
T PRK10436 173 ATLPCRGGE--KVVLRLLQQVQQALDLETLGMTPAQLAQFRQALQQPQGLILVTGPTGSGKTVTLYSALQTLNTA-QINI 249 (462)
T ss_pred EEeecCCCc--eEEEEEeccccCCCCHHHcCcCHHHHHHHHHHHHhcCCeEEEECCCCCChHHHHHHHHHhhCCC-CCEE
Confidence 999998888 99999864432 1122222 122 467899999999999999999888887654 6889
Q ss_pred EEEcCCcccccCCCCcccccccchhccCC-CcchhHHHHHHHHHhhCCcEEEEcCCCCHHHHHHHHHHHhcCCeEEEEEc
Q 019702 155 VIVDTSNEIGGDGDIPHSAIGTARRMQVP-EPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRSIAERGVMLIGTAH 233 (337)
Q Consensus 155 ~~v~~~~ei~~~~~~~~~~~~~~~~~~~~-S~g~k~r~~ia~al~~~P~vlilDEp~~~ld~~~l~~~~~~G~tvi~t~H 233 (337)
.+++++.|+...+ +. +..+. ..|..+.-++..+|+++||+|+++|+++.+.+++..+++.+||.|+.|.|
T Consensus 250 ~TiEDPvE~~l~g-i~--------Q~~v~~~~g~~f~~~lr~~LR~dPDvI~vGEIRD~eta~~al~AA~TGHlVlsTlH 320 (462)
T PRK10436 250 CSVEDPVEIPLAG-IN--------QTQIHPKAGLTFQRVLRALLRQDPDVIMVGEIRDGETAEIAIKAAQTGHLVLSTLH 320 (462)
T ss_pred EEecCCccccCCC-cc--------eEeeCCccCcCHHHHHHHHhcCCCCEEEECCCCCHHHHHHHHHHHHcCCcEEEeec
Confidence 9999999874321 11 12222 23566778999999999999999999999999988888999999999999
Q ss_pred CcchhHHh
Q 019702 234 GEWLENII 241 (337)
Q Consensus 234 ~~~~~~~~ 241 (337)
..+....+
T Consensus 321 a~~a~~ai 328 (462)
T PRK10436 321 TNSTSETL 328 (462)
T ss_pred cCChHHHH
Confidence 99866543
No 383
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.79 E-value=2e-19 Score=161.82 Aligned_cols=138 Identities=17% Similarity=0.093 Sum_probs=91.7
Q ss_pred hhhhcc-cCCCEEEEEcCCCCcHHHHHHHHHccc-cccCCC-----------------eEEEEcCCccccc----CCCCc
Q 019702 114 MVYDLL-HYGKSILFVGRPGVGKTTVMREIARVL-SDEFQK-----------------RVVIVDTSNEIGG----DGDIP 170 (337)
Q Consensus 114 ~l~~~v-~~g~~v~IiGpnGsGKTTLL~~l~gll-~~~~~~-----------------~i~~v~~~~ei~~----~~~~~ 170 (337)
.++|.. .+|++++|+||||||||||+++|++.+ .+.... .|.+..+..+..+ ...+.
T Consensus 19 ~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~~~~r~~gl~ 98 (213)
T cd03279 19 VIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFAPGEDTAEVSFTFQLGGKKYRVERSRGLD 98 (213)
T ss_pred EEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccchhHHHHhcCCCccEEEEEEEEECCeEEEEEEecCCC
Confidence 344433 358899999999999999999999644 222110 1111111110000 00011
Q ss_pred cccc--------c---c--chhccCCCcchhHHHHHHHHHhh----------CCcEEEEcCCCCHHHH-------HHHHH
Q 019702 171 HSAI--------G---T--ARRMQVPEPSLQHKVMIEAVENH----------MPEVIIVDEIGTEAEA-------HACRS 220 (337)
Q Consensus 171 ~~~~--------~---~--~~~~~~~S~g~k~r~~ia~al~~----------~P~vlilDEp~~~ld~-------~~l~~ 220 (337)
...+ + . ......+|+|++||+++|+|++. +|+++++|||++++|. +.+.+
T Consensus 99 ~~~~~~~~~l~~g~l~~~l~~~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~ 178 (213)
T cd03279 99 YDQFTRIVLLPQGEFDRFLARPVSTLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALEL 178 (213)
T ss_pred HHHHHHhhhhhhcchHHHhcCCccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 0000 0 0 12244579999999999999985 5789999999999995 34555
Q ss_pred HHhcCCeEEEEEcCcchhHHhhchHHHHHhcCc
Q 019702 221 IAERGVMLIGTAHGEWLENIIKNPILSDLIGGV 253 (337)
Q Consensus 221 ~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G 253 (337)
+.++|.|+|++||+.+++..+|++++ ++++|
T Consensus 179 ~~~~~~tii~itH~~~~~~~~~~~i~--~~~~~ 209 (213)
T cd03279 179 IRTENRMVGVISHVEELKERIPQRLE--VIKTP 209 (213)
T ss_pred HHhCCCEEEEEECchHHHHhhCcEEE--EEecC
Confidence 55668999999999999999999998 77765
No 384
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=99.78 E-value=3.6e-17 Score=156.21 Aligned_cols=221 Identities=18% Similarity=0.147 Sum_probs=147.9
Q ss_pred HHHhcccCCCCeeEEEEecCCccEEEEeCccCceeccCCCCCHHHHHHHHHHHhccCC----CcceEecCc---eeEEEE
Q 019702 17 DRLQNDSKRGQLLEVILDLGRLPEARYLGEFGGKYLRSTEVSVEELEYAQSAVGEFGG----DNRAGIEGT---LHRISA 89 (337)
Q Consensus 17 ~~l~~~~~~~~~~ei~l~~g~~~~~~~~g~~~~~~~~~~~~t~~~l~~~~~~~~~~~~----~~~~~~~g~---~~rv~~ 89 (337)
..|+++..+..++||++..+.+++++..|.+. ......++.++++.+++.+..+.+ ...+.+..+ ..|+++
T Consensus 13 ~~l~~ll~d~~vtEI~iN~~~~v~v~~~G~~~--~~~~~~~~~~~~~~l~~~ia~~~~~~i~~~~P~l~~~Lp~G~Rv~~ 90 (332)
T PRK13900 13 EPLKNIFAEDGVNEISINKPGEVWVEKKGDIR--CEQIPELDLSHLKALGRLVAQATEQKISEEKPLLSATLPNGYRIQI 90 (332)
T ss_pred hhHHHHhcCCCCEEEEECCCCEEEEEECCcEE--EecCCCCCHHHHHHHHHHHHHHcCCcccCCCceEEEEcCCCeEEEE
Confidence 44555566788999999999999999888653 333346899999998887743321 122333322 157777
Q ss_pred EeeC----CCcEeeEEEEECCccccchhh-----------------------------------hhhcccCCCEEEEEcC
Q 019702 90 IRSR----KGAIVGLTCRVGRAVSGHIDM-----------------------------------VYDLLHYGKSILFVGR 130 (337)
Q Consensus 90 ~~~~----~g~i~~l~~r~~~~~~~~~~~-----------------------------------l~~~v~~g~~v~IiGp 130 (337)
.... ++. .+++|........+++ +...+..+..++|.|+
T Consensus 91 ~~~p~~~~~~~--~~~IRk~~~~~~sl~~l~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~~v~~~~nili~G~ 168 (332)
T PRK13900 91 VFPPACEIGQI--VYSIRKPSGMQLTLDDYEKMGAFDETATESLVDEDDVILNELLAEKKIKEFLEHAVISKKNIIISGG 168 (332)
T ss_pred EcCCcccCCCc--eEEEECCCCCCCCHHHHHhcCCCCcccccccccchhhhhhhhhhhHHHHHHHHHHHHcCCcEEEECC
Confidence 6532 223 6778875543211122 2223456889999999
Q ss_pred CCCcHHHHHHHHHccccccCCCeEEEEcCCcccccCCCCcccccccchhccCCCcchhHHHHHHHHHhhCCcEEEEcCCC
Q 019702 131 PGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIG 210 (337)
Q Consensus 131 nGsGKTTLL~~l~gll~~~~~~~i~~v~~~~ei~~~~~~~~~~~~~~~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~ 210 (337)
+|||||||+++|+..+++ ..+++++++..|+.... .++.......+....+......-.+..+|+++||+|+++|.+
T Consensus 169 tgSGKTTll~aL~~~ip~--~~ri~tiEd~~El~l~~-~~n~~~~~~~~~~~~~~~~~~~~ll~~~LR~~PD~IivGEiR 245 (332)
T PRK13900 169 TSTGKTTFTNAALREIPA--IERLITVEDAREIVLSN-HPNRVHLLASKGGQGRAKVTTQDLIEACLRLRPDRIIVGELR 245 (332)
T ss_pred CCCCHHHHHHHHHhhCCC--CCeEEEecCCCcccccc-CCCEEEEEecCCCCCcCcCcHHHHHHHHhccCCCeEEEEecC
Confidence 999999999999999976 47899999988885421 111111011111122233345568899999999999999999
Q ss_pred CHHHHHHHHHHHhcCCe-EEEEEcCcchhHHhhchHH
Q 019702 211 TEAEAHACRSIAERGVM-LIGTAHGEWLENIIKNPIL 246 (337)
Q Consensus 211 ~~ld~~~l~~~~~~G~t-vi~t~H~~~~~~~~~d~v~ 246 (337)
..+... +.++..+||. ++.|.|..+..+.+ +|+.
T Consensus 246 ~~ea~~-~l~a~~tGh~G~~tTiHa~s~~~ai-~Rl~ 280 (332)
T PRK13900 246 GAEAFS-FLRAINTGHPGSISTLHADSPAMAI-EQLK 280 (332)
T ss_pred CHHHHH-HHHHHHcCCCcEEEEEecCCHHHHH-HHHH
Confidence 986554 4566789996 89999999866654 4444
No 385
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=99.78 E-value=2.9e-17 Score=164.25 Aligned_cols=201 Identities=20% Similarity=0.248 Sum_probs=141.8
Q ss_pred CCCeeEEEEecC---CccEEEEeCccCceeccCCCCCHHHHHHHHHHH---h-------ccCCCcceE--ecCc--eeEE
Q 019702 25 RGQLLEVILDLG---RLPEARYLGEFGGKYLRSTEVSVEELEYAQSAV---G-------EFGGDNRAG--IEGT--LHRI 87 (337)
Q Consensus 25 ~~~~~ei~l~~g---~~~~~~~~g~~~~~~~~~~~~t~~~l~~~~~~~---~-------~~~~~~~~~--~~g~--~~rv 87 (337)
..++||||+..+ .++.+|++|.+. .+.. ++.+.-..++.++ . +...++++. +.+. .+|+
T Consensus 121 ~~~ASDIHi~~~~~~~~vr~RidG~l~--~~~~--~~~~~~~~l~~~ik~~~~~d~~e~r~pQdg~~~~~~~~~~~~~Rv 196 (486)
T TIGR02533 121 KERASDIHIEPFEKALVVRFRVDGVLR--DVLS--PPKKLHAALVSRVKIMAKLNIAEKRLPQDGRISLRVGGRDIDIRV 196 (486)
T ss_pred HcCCCEEEEEECCCceEEEEEECCEEE--EcCC--CcHHHHHHHHHHHHHhcCChHHHHhhcCCcEEEEeeCCeeEEEEE
Confidence 367999999984 578999999864 3322 2333323333322 1 223344444 4454 5899
Q ss_pred EEEeeCCCcEeeEEEEECCcc--ccchhhhh----------hcc-cCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeE
Q 019702 88 SAIRSRKGAIVGLTCRVGRAV--SGHIDMVY----------DLL-HYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRV 154 (337)
Q Consensus 88 ~~~~~~~g~i~~l~~r~~~~~--~~~~~~l~----------~~v-~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i 154 (337)
+.+....|. ++++|..... ...+..+. ..+ .+.++++|+||+||||||+|+++...+++. ..++
T Consensus 197 s~~p~~~G~--~~vlRll~~~~~~~~l~~Lg~~~~~~~~l~~~~~~~~GlilitGptGSGKTTtL~a~L~~l~~~-~~~i 273 (486)
T TIGR02533 197 STVPTSHGE--RVVMRLLDKTAVRLDLETLGMSPELLSRFERLIRRPHGIILVTGPTGSGKTTTLYAALSRLNTP-ERNI 273 (486)
T ss_pred EEEecCCCc--eEEEEeccCccCCCCHHHcCCCHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHhccCCC-CCcE
Confidence 999998888 9999986532 21233322 223 345699999999999999999888877654 5789
Q ss_pred EEEcCCcccccCCCCcccccccchhccC-CCcchhHHHHHHHHHhhCCcEEEEcCCCCHHHHHHHHHHHhcCCeEEEEEc
Q 019702 155 VIVDTSNEIGGDGDIPHSAIGTARRMQV-PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRSIAERGVMLIGTAH 233 (337)
Q Consensus 155 ~~v~~~~ei~~~~~~~~~~~~~~~~~~~-~S~g~k~r~~ia~al~~~P~vlilDEp~~~ld~~~l~~~~~~G~tvi~t~H 233 (337)
.+++++.|+...+ +.+ ..+ ...|..+.-++..+|+++||+|+++|++..+.+..+.+++.+||.|+.|.|
T Consensus 274 iTiEDpvE~~~~~-~~q--------~~v~~~~g~~f~~~lr~~LR~dPDvI~vGEiRd~eta~~a~~aa~tGHlvlsTlH 344 (486)
T TIGR02533 274 LTVEDPVEYQIEG-IGQ--------IQVNPKIGLTFAAGLRAILRQDPDIIMVGEIRDLETAQIAIQASLTGHLVLSTLH 344 (486)
T ss_pred EEEcCCeeeecCC-Cce--------EEEccccCccHHHHHHHHHhcCCCEEEEeCCCCHHHHHHHHHHHHhCCcEEEEEC
Confidence 9999988875321 111 111 123556777899999999999999999999999888899999999999999
Q ss_pred CcchhHHh
Q 019702 234 GEWLENII 241 (337)
Q Consensus 234 ~~~~~~~~ 241 (337)
..+....+
T Consensus 345 a~sa~~ai 352 (486)
T TIGR02533 345 TNDAAGAV 352 (486)
T ss_pred CCCHHHHH
Confidence 99866543
No 386
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.78 E-value=8.6e-19 Score=171.18 Aligned_cols=166 Identities=14% Similarity=0.156 Sum_probs=117.9
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCe-------EEEEcCCc--ccccC-
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKR-------VVIVDTSN--EIGGD- 166 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~-------i~~v~~~~--ei~~~- 166 (337)
+.+++|+|.... .....++|-++.++.++++||||+||||||+.+.|.+.|+.|.- +....+.. ++...
T Consensus 392 ~~nv~F~y~~~~-~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~~~~y~Qh~~e~ldl~~ 470 (614)
T KOG0927|consen 392 VQNVSFGYSDNP-MIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNKLPRYNQHLAEQLDLDK 470 (614)
T ss_pred EeccccCCCCcc-hhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccccccccccccccchhhhhhhHhhcCcch
Confidence 457888887654 35888999999999999999999999999999999999984321 11111110 00000
Q ss_pred -------CCCcc-cc-------ccc--------chhccCCCcchhHHHHHHHHHhhCCcEEEEcCCCCHHHHHHHHHH--
Q 019702 167 -------GDIPH-SA-------IGT--------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRSI-- 221 (337)
Q Consensus 167 -------~~~~~-~~-------~~~--------~~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~~ld~~~l~~~-- 221 (337)
..++. .. ++. ...+..+|+|||.||.+|+.+...|.+|+|||||+++|++.+..+
T Consensus 471 s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~lae 550 (614)
T KOG0927|consen 471 SSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAE 550 (614)
T ss_pred hHHHHHHHhccccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHH
Confidence 01110 00 000 123456799999999999999999999999999999997554433
Q ss_pred -H-hcCCeEEEEEcCcchhHHhhchHHHHHhcCce-EEEecCHHHHH
Q 019702 222 -A-ERGVMLIGTAHGEWLENIIKNPILSDLIGGVD-TVTLGDEEARA 265 (337)
Q Consensus 222 -~-~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~-iv~~g~~~~~~ 265 (337)
. +--.+||.+|||..++..++++++ .-.++. ....|+...-.
T Consensus 551 aiNe~~Ggvv~vSHDfrlI~qVaeEi~--~c~~~~~~~~~G~i~~yk 595 (614)
T KOG0927|consen 551 AINEFPGGVVLVSHDFRLISQVAEEIW--VCENGTVTKWDGDIEIYK 595 (614)
T ss_pred HHhccCCceeeeechhhHHHHHHHHhH--hhccCceeecCccHHHHH
Confidence 3 335689999999999999999999 555554 55556665433
No 387
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=99.77 E-value=1.1e-17 Score=155.65 Aligned_cols=215 Identities=19% Similarity=0.226 Sum_probs=140.7
Q ss_pred HHhcccCCCCeeEEEEecCCccEEEEeCccCceeccCCCCCHHHHHHHHHHHhccC------C--CcceEecCceeEEEE
Q 019702 18 RLQNDSKRGQLLEVILDLGRLPEARYLGEFGGKYLRSTEVSVEELEYAQSAVGEFG------G--DNRAGIEGTLHRISA 89 (337)
Q Consensus 18 ~l~~~~~~~~~~ei~l~~g~~~~~~~~g~~~~~~~~~~~~t~~~l~~~~~~~~~~~------~--~~~~~~~g~~~rv~~ 89 (337)
.|+++..+.+++||++..+..+.+...|.. .......++.+++..+++.+.... . -.+..+.+...|+++
T Consensus 3 ~l~~~l~d~~~sdI~i~~~~~v~v~~~~~~--~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~p~~~~~~~~~~~R~~i 80 (270)
T PF00437_consen 3 PLEPLLDDPEVSDIHINGPDEVWVKRIGGW--VRSPVRFLSEEELERLIRRLASAAGREINERNPIQDGELPGDGIRVRI 80 (270)
T ss_dssp HHHHHHHHTTECEEEEESTTEEEEEETTEE--EEEESTTCGHHHHHHHHHHHHHHTTHHHHCCSSEEEEEECTTSEEEEE
T ss_pred hhhHhhCCCCCEEEEEECCCeEEEEEcCcE--EEEeCCCCCHHHHHHHHHHHHHHhhhhHHhhCcceeeEEeeCCeEEEE
Confidence 344544567899999999999777444542 244456778999998888774321 1 233445422244545
Q ss_pred Ee--eCCCcEeeEEEEECCccccch--------------hhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCe
Q 019702 90 IR--SRKGAIVGLTCRVGRAVSGHI--------------DMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKR 153 (337)
Q Consensus 90 ~~--~~~g~i~~l~~r~~~~~~~~~--------------~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~ 153 (337)
.. ...++ .+++|......-.+ +.+...++.+..++|.|++||||||++++++..+++. ..+
T Consensus 81 ~~~p~~~~~--~~~iR~~~~~~~sle~l~~~~~~~~~~~~~l~~~v~~~~~ili~G~tGSGKTT~l~all~~i~~~-~~~ 157 (270)
T PF00437_consen 81 TTPPVSGGP--TIVIRKFSSKPFSLEDLGESGSIPEEIAEFLRSAVRGRGNILISGPTGSGKTTLLNALLEEIPPE-DER 157 (270)
T ss_dssp EETTTSTSE--EEEEEEETSS--CHCCCCHTHHCHHHHHHHHHHCHHTTEEEEEEESTTSSHHHHHHHHHHHCHTT-TSE
T ss_pred EEcCCcCCc--ccceeccccccccHhhccCchhhHHHHHHHHhhccccceEEEEECCCccccchHHHHHhhhcccc-ccc
Confidence 44 33444 89999654332111 1222335568899999999999999999999999875 589
Q ss_pred EEEEcCCcccccCCCCcccccccchhccCCCcchhHHHHHHHHHhhCCcEEEEcCCCCHHHHHHHHHHHhcCCeE-EEEE
Q 019702 154 VVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRSIAERGVML-IGTA 232 (337)
Q Consensus 154 i~~v~~~~ei~~~~~~~~~~~~~~~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~~ld~~~l~~~~~~G~tv-i~t~ 232 (337)
+++++++.|+..... +....... .+...+.-++..+|+++||+|+++|+++.+...+ .+++.+|+.+ +.|.
T Consensus 158 iv~iEd~~E~~l~~~---~~~~~~~~----~~~~~~~~~l~~~LR~~pD~iiigEiR~~e~~~~-~~a~~tGh~~~~tT~ 229 (270)
T PF00437_consen 158 IVTIEDPPELRLPGP---NQIQIQTR----RDEISYEDLLKSALRQDPDVIIIGEIRDPEAAEA-IQAANTGHLGSLTTL 229 (270)
T ss_dssp EEEEESSS-S--SCS---SEEEEEEE----TTTBSHHHHHHHHTTS--SEEEESCE-SCHHHHH-HHHHHTT-EEEEEEE
T ss_pred eEEeccccceeeccc---ceEEEEee----cCcccHHHHHHHHhcCCCCcccccccCCHhHHHH-HHhhccCCceeeeee
Confidence 999999888854211 11111011 4455666789999999999999999999988877 7788999999 9999
Q ss_pred cCcchhHHhhchHH
Q 019702 233 HGEWLENIIKNPIL 246 (337)
Q Consensus 233 H~~~~~~~~~d~v~ 246 (337)
|..+..+.+. |+.
T Consensus 230 Ha~s~~~~i~-Rl~ 242 (270)
T PF00437_consen 230 HANSAEDAIE-RLA 242 (270)
T ss_dssp E-SSHHHHHH-HHH
T ss_pred ecCCHHHHHH-HHH
Confidence 9999665543 555
No 388
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.77 E-value=1.4e-19 Score=150.90 Aligned_cols=99 Identities=17% Similarity=0.307 Sum_probs=69.9
Q ss_pred hhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEE-------------------EcCCcccccCCCCccc
Q 019702 112 IDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVI-------------------VDTSNEIGGDGDIPHS 172 (337)
Q Consensus 112 ~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~-------------------v~~~~ei~~~~~~~~~ 172 (337)
++++++.+++|++++|+|+||||||||+++|+|++.|. .+.|.+ +++...+.....+.++
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~-~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~ 79 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPD-SGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVREN 79 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHES-EEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHH
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeeccccccc-ccccccccccccccccccccccccccccccccccccccccc
Confidence 35788999999999999999999999999999999886 333332 2221111000000000
Q ss_pred ----c-------cc----cchh----ccCCCcchhHHHHHHHHHhhCCcEEEEcCCCC
Q 019702 173 ----A-------IG----TARR----MQVPEPSLQHKVMIEAVENHMPEVIIVDEIGT 211 (337)
Q Consensus 173 ----~-------~~----~~~~----~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~ 211 (337)
. +. .... ...+|+||+||++||+|+..+|+++|+||||+
T Consensus 80 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 80 ESDERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp HHHHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred cccccccccccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 0 00 0122 26789999999999999999999999999996
No 389
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.76 E-value=2.5e-18 Score=172.58 Aligned_cols=148 Identities=17% Similarity=0.220 Sum_probs=109.5
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccC-------CCeEEEEcCCcccccC---
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEF-------QKRVVIVDTSNEIGGD--- 166 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~-------~~~i~~v~~~~ei~~~--- 166 (337)
++|+++.-+... ..++++++.+++|+.++|.||||||||||+|+|+|+.+-.. +..+.+++|.+.+...
T Consensus 395 ~~nl~l~~p~~~-~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~~~~lflpQ~PY~p~GtLr 473 (604)
T COG4178 395 LENLSLRTPDGQ-TLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRPYLPQGTLR 473 (604)
T ss_pred EeeeeEECCCCC-eeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCCCCceEEecCCCCCCCccHH
Confidence 678888887655 35899999999999999999999999999999999997542 2345666666544321
Q ss_pred --CCCcccc--ccc----------------------chhccCCCcchhHHHHHHHHHhhCCcEEEEcCCCCHHHHHH---
Q 019702 167 --GDIPHSA--IGT----------------------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA--- 217 (337)
Q Consensus 167 --~~~~~~~--~~~----------------------~~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~~ld~~~--- 217 (337)
-.+|... +.. .+.-.++|+|+|||+++||.+.++|++++|||-|+++|.+.
T Consensus 474 e~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~ 553 (604)
T COG4178 474 EALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDR 553 (604)
T ss_pred HHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHH
Confidence 0112111 100 12335689999999999999999999999999999999543
Q ss_pred -HHHHHh--cCCeEEEEEcCcchhHHhhchHH
Q 019702 218 -CRSIAE--RGVMLIGTAHGEWLENIIKNPIL 246 (337)
Q Consensus 218 -l~~~~~--~G~tvi~t~H~~~~~~~~~d~v~ 246 (337)
...+.+ .+.|||.++|..... .+.++.+
T Consensus 554 l~q~l~~~lp~~tvISV~Hr~tl~-~~h~~~l 584 (604)
T COG4178 554 LYQLLKEELPDATVISVGHRPTLW-NFHSRQL 584 (604)
T ss_pred HHHHHHhhCCCCEEEEeccchhhH-HHHhhhe
Confidence 333444 589999999998754 4555555
No 390
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=99.76 E-value=4.5e-17 Score=165.96 Aligned_cols=203 Identities=18% Similarity=0.257 Sum_probs=143.5
Q ss_pred CCCeeEEEEec---CCccEEEEeCccCceeccCCCCCH-HHHHHHHHHHh-------ccCCCcceE--e-cCc--eeEEE
Q 019702 25 RGQLLEVILDL---GRLPEARYLGEFGGKYLRSTEVSV-EELEYAQSAVG-------EFGGDNRAG--I-EGT--LHRIS 88 (337)
Q Consensus 25 ~~~~~ei~l~~---g~~~~~~~~g~~~~~~~~~~~~t~-~~l~~~~~~~~-------~~~~~~~~~--~-~g~--~~rv~ 88 (337)
..++||||+.. +.++.+|++|.+. .+...+.+. +.+...++.+. +...++++. + .+. .+|+|
T Consensus 194 ~~~ASDIhi~~~~~~~~v~~RidG~l~--~~~~~~~~~~~~~~~~~k~~~~~~~~~~r~pQ~g~~~~~~~~~~~~~~Rvs 271 (564)
T TIGR02538 194 RKGASDIHFEPYEKSYRVRFRIDGILH--EVAQPPLALANRIAARIKVMSRLDIAEKRIPQDGRIKLKLSKSKAIDFRVS 271 (564)
T ss_pred HcCCceEEEEecCCeEEEEEEECCEEE--EccCCCHHHHHHHHHHHHHHcCCChhccccCccceEEEEecCCceEEEEEE
Confidence 36799999998 7799999999874 443333331 11222222221 122344444 3 222 58999
Q ss_pred EEeeCCCcEeeEEEEECCccc--cchhhh----------hhcc-cCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEE
Q 019702 89 AIRSRKGAIVGLTCRVGRAVS--GHIDMV----------YDLL-HYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVV 155 (337)
Q Consensus 89 ~~~~~~g~i~~l~~r~~~~~~--~~~~~l----------~~~v-~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~ 155 (337)
.+.+..|. ++++|...... ..++.+ ...+ .+.++++|.||+||||||+|.++...+++. ..++.
T Consensus 272 ~~p~~~G~--~~vlRll~~~~~~~~l~~lg~~~~~~~~l~~~~~~~~Glilv~G~tGSGKTTtl~a~l~~~~~~-~~~i~ 348 (564)
T TIGR02538 272 TLPTLFGE--KVVLRILDSSAAQLDIDKLGFEPDQKALFLEAIHKPQGMVLVTGPTGSGKTVSLYTALNILNTE-EVNIS 348 (564)
T ss_pred eccCCCCc--eeEEEeecCccccCCHHHcCCCHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHhhCCC-CceEE
Confidence 99998888 99999865432 112222 2222 356799999999999999999999888654 57899
Q ss_pred EEcCCcccccCCCCcccccccchhccC-CCcchhHHHHHHHHHhhCCcEEEEcCCCCHHHHHHHHHHHhcCCeEEEEEcC
Q 019702 156 IVDTSNEIGGDGDIPHSAIGTARRMQV-PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRSIAERGVMLIGTAHG 234 (337)
Q Consensus 156 ~v~~~~ei~~~~~~~~~~~~~~~~~~~-~S~g~k~r~~ia~al~~~P~vlilDEp~~~ld~~~l~~~~~~G~tvi~t~H~ 234 (337)
+++++.|+...+ +. +..+ ...|..+.-++..+|+++||+|+++|+++.+.+.++.+++.+||.|+.|.|.
T Consensus 349 tiEdpvE~~~~~-~~--------q~~v~~~~g~~~~~~l~~~LR~dPDvI~vGEiRd~eta~~a~~aa~tGHlv~tTlHa 419 (564)
T TIGR02538 349 TAEDPVEINLPG-IN--------QVNVNPKIGLTFAAALRSFLRQDPDIIMVGEIRDLETAEIAIKAAQTGHLVLSTLHT 419 (564)
T ss_pred EecCCceecCCC-ce--------EEEeccccCCCHHHHHHHHhccCCCEEEeCCCCCHHHHHHHHHHHHcCCcEEEEecc
Confidence 999998875421 11 1121 1335677889999999999999999999999999888899999999999999
Q ss_pred cchhHHh
Q 019702 235 EWLENII 241 (337)
Q Consensus 235 ~~~~~~~ 241 (337)
.+....+
T Consensus 420 ~~a~~~i 426 (564)
T TIGR02538 420 NDAPETL 426 (564)
T ss_pred CCHHHHH
Confidence 9866543
No 391
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.74 E-value=3.3e-18 Score=164.24 Aligned_cols=128 Identities=16% Similarity=0.238 Sum_probs=96.5
Q ss_pred ccCCCEEEEEcCCCCcHHHHHHHHHccccccCC----CeEEEEcCCcccccCCCCc----------------c-ccccc-
Q 019702 119 LHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ----KRVVIVDTSNEIGGDGDIP----------------H-SAIGT- 176 (337)
Q Consensus 119 v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~----~~i~~v~~~~ei~~~~~~~----------------~-~~~~~- 176 (337)
+..||+++++||||-||||+++.|+|.++|+.+ -++.|-+|...--+.+.+. . ..+..
T Consensus 364 i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~~~~~~vSyKPQyI~~~~~gtV~~~l~~~~~~~~~~s~~~~ei~~pl 443 (591)
T COG1245 364 IYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGSEEDLKVSYKPQYISPDYDGTVEDLLRSAIRSAFGSSYFKTEIVKPL 443 (591)
T ss_pred eecceEEEEECCCCcchHHHHHHHhccccCCCCCCccceEeecceeecCCCCCcHHHHHHHhhhhhcccchhHHhhcCcc
Confidence 556789999999999999999999999999855 2444444321111110000 0 00000
Q ss_pred ------chhccCCCcchhHHHHHHHHHhhCCcEEEEcCCCCHHHH-------HHHHHHH-hcCCeEEEEEcCcchhHHhh
Q 019702 177 ------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEA-------HACRSIA-ERGVMLIGTAHGEWLENIIK 242 (337)
Q Consensus 177 ------~~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~~ld~-------~~l~~~~-~~G~tvi~t~H~~~~~~~~~ 242 (337)
-+++..+|||+.||+++|++|..+.|+.+||||++.||. .+++... ++++|.+++-||.-+.+.++
T Consensus 444 ~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~vakvIRR~~e~~~kta~vVdHDi~~~dyvs 523 (591)
T COG1245 444 NLEDLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDIYMIDYVS 523 (591)
T ss_pred chHHHHhcccccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHHHHHHHHHHHHhhcCceEEEEecceehhhhhh
Confidence 145667899999999999999999999999999999995 4566666 45899999999999999999
Q ss_pred chHH
Q 019702 243 NPIL 246 (337)
Q Consensus 243 d~v~ 246 (337)
|+++
T Consensus 524 Dr~i 527 (591)
T COG1245 524 DRLI 527 (591)
T ss_pred ceEE
Confidence 9888
No 392
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=99.74 E-value=2.4e-16 Score=148.67 Aligned_cols=214 Identities=18% Similarity=0.207 Sum_probs=144.3
Q ss_pred HhcccCCCCeeEEEEecCCccEEEEeCccCceeccCCCCCHHHHHHHHHHHhccCC----CcceEecCc----eeEEEEE
Q 019702 19 LQNDSKRGQLLEVILDLGRLPEARYLGEFGGKYLRSTEVSVEELEYAQSAVGEFGG----DNRAGIEGT----LHRISAI 90 (337)
Q Consensus 19 l~~~~~~~~~~ei~l~~g~~~~~~~~g~~~~~~~~~~~~t~~~l~~~~~~~~~~~~----~~~~~~~g~----~~rv~~~ 90 (337)
|.++.++.+++||.+.....+.++..|... ... ..++.+++..+++++..+.+ ..++.+.++ ..|+++.
T Consensus 10 l~~~l~d~~v~eI~in~~~~v~v~~~g~~~--~~~-~~~s~~~~~~l~~~la~~~g~~~~~~~P~~~~~lp~~g~R~~~~ 86 (299)
T TIGR02782 10 IAAALDDPGVVEIMLNPDGRLWVERLGSGM--SPL-GEMSPADAQRIIGLVADYLGTEVDRDKPIVEGELPLDGSRFEGL 86 (299)
T ss_pred HHHHhcCCCceEEEEcCCCeEEEEECCceE--Eec-CCCCHHHHHHHHHHHHHHhCCeecCCCCEEEEEECCCCEEEEEE
Confidence 344445678999999999999888777421 222 33899999999887754322 223333332 2577765
Q ss_pred eeC--CCcEeeEEEEECCccccchhh--------------hhhcccCCCEEEEEcCCCCcHHHHHHHHHcccccc-CCCe
Q 019702 91 RSR--KGAIVGLTCRVGRAVSGHIDM--------------VYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDE-FQKR 153 (337)
Q Consensus 91 ~~~--~g~i~~l~~r~~~~~~~~~~~--------------l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~-~~~~ 153 (337)
... .|+ .+++|........++. +...+..+..++|.|++|||||||+++|++.+++. ...+
T Consensus 87 ~~p~~~g~--~i~IRk~~~~~~tl~~l~~~g~~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~r 164 (299)
T TIGR02782 87 IPPVVAAP--SFAIRKKAVAVFTLDDYVEAGIMTAAQRDVLREAVLARKNILVVGGTGSGKTTLANALLAEIAKNDPTDR 164 (299)
T ss_pred ecCccCCc--EEEEECcCCCCCCHHHHHhcCCCCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHhhccCCCce
Confidence 432 356 8999986544322322 33346677899999999999999999999998642 2578
Q ss_pred EEEEcCCcccccCCCCcccccccchhccCCCcchhHHHHHHHHHhhCCcEEEEcCCCCHHHHHHHHHHHhcCCe-EEEEE
Q 019702 154 VVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRSIAERGVM-LIGTA 232 (337)
Q Consensus 154 i~~v~~~~ei~~~~~~~~~~~~~~~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~~ld~~~l~~~~~~G~t-vi~t~ 232 (337)
++++++..|+.... .+.+... .. .+.....-++..+|+++||+|+++|.+..+..+ +.+++.+||. ++.|.
T Consensus 165 i~tiEd~~El~~~~---~~~v~~~--~~--~~~~~~~~~l~~aLR~~pD~iivGEiR~~ea~~-~l~a~~tGh~G~~tTi 236 (299)
T TIGR02782 165 VVIIEDTRELQCAA---PNVVQLR--TS--DDAISMTRLLKATLRLRPDRIIVGEVRGGEALD-LLKAWNTGHPGGIATI 236 (299)
T ss_pred EEEECCchhhcCCC---CCEEEEE--ec--CCCCCHHHHHHHHhcCCCCEEEEeccCCHHHHH-HHHHHHcCCCCeEEee
Confidence 99999988875321 1111110 11 111145568999999999999999999986544 4567789996 89999
Q ss_pred cCcchhHHhhchHH
Q 019702 233 HGEWLENIIKNPIL 246 (337)
Q Consensus 233 H~~~~~~~~~d~v~ 246 (337)
|..+..+.+. |+.
T Consensus 237 Ha~~~~~ai~-Rl~ 249 (299)
T TIGR02782 237 HANNAKAALD-RLE 249 (299)
T ss_pred ccCCHHHHHH-HHH
Confidence 9999776553 443
No 393
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.74 E-value=1.8e-16 Score=155.24 Aligned_cols=202 Identities=20% Similarity=0.230 Sum_probs=144.5
Q ss_pred CCeeEEEEecCC---ccEEEEeCccCceeccCCCCCHHHHHHHHHHHh----------ccCCCcceE--ecCc--eeEEE
Q 019702 26 GQLLEVILDLGR---LPEARYLGEFGGKYLRSTEVSVEELEYAQSAVG----------EFGGDNRAG--IEGT--LHRIS 88 (337)
Q Consensus 26 ~~~~ei~l~~g~---~~~~~~~g~~~~~~~~~~~~t~~~l~~~~~~~~----------~~~~~~~~~--~~g~--~~rv~ 88 (337)
.++||||+..-. .+.+|++|.+. .+.. +..+-...++.++. +..-|+|+. +.|. -+|+|
T Consensus 138 ~~ASDIHiep~~~~~~IrfRidGvL~--~~~~--~~~~~~~~lvsriK~ma~LDIaErR~PQdGr~~~~~~~~~vd~RvS 213 (500)
T COG2804 138 EGASDIHIEPRENRYRIRFRIDGVLR--EVLE--PPKELAAALVSRLKVMAGLDIAERRLPQDGRIRLKLNGRKVDFRVS 213 (500)
T ss_pred cCCCceEEEeccCeEEEEEEECCEee--ehhc--cCHHHHHHHHHHHHHHhcCchhhccCCCCceEEEEeCCeeEEEEEe
Confidence 579999998654 45567777653 2222 23555555665552 223456655 4455 48999
Q ss_pred EEeeCCCcEeeEEEEECCcccc--chhhh----------hhcc-cCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEE
Q 019702 89 AIRSRKGAIVGLTCRVGRAVSG--HIDMV----------YDLL-HYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVV 155 (337)
Q Consensus 89 ~~~~~~g~i~~l~~r~~~~~~~--~~~~l----------~~~v-~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~ 155 (337)
.+=+..|. .+.+|.-..... .++.+ .-.+ .+-++++++||+||||||+|-.+...++.. ..+|.
T Consensus 214 tlP~~~GE--kvVlRil~~~~~~l~l~~Lg~~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTTLY~~L~~ln~~-~~nI~ 290 (500)
T COG2804 214 TLPTFYGE--KVVLRILDKDQVILDLEKLGMSPFQLARLLRLLNRPQGLILVTGPTGSGKTTTLYAALSELNTP-ERNII 290 (500)
T ss_pred cCCCCCCc--EEEEEEeccccccCCHHHhCCCHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHHHHHHhcCC-CceEE
Confidence 99988888 899988654331 11222 1113 456799999999999999999999998765 56799
Q ss_pred EEcCCcccccCCCCcccccccchhccCCCcchhHHHHHHHHHhhCCcEEEEcCCCCHHHHHHHHHHHhcCCeEEEEEcCc
Q 019702 156 IVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRSIAERGVMLIGTAHGE 235 (337)
Q Consensus 156 ~v~~~~ei~~~~~~~~~~~~~~~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~~ld~~~l~~~~~~G~tvi~t~H~~ 235 (337)
+++++.|+...+ +.+..+. ..-|+-+.-++.+.|+++||||+++|++..+.++...+++.+||.|+.|.|..
T Consensus 291 TiEDPVE~~~~g-I~Q~qVN-------~k~gltfa~~LRa~LRqDPDvImVGEIRD~ETAeiavqAalTGHLVlSTlHtn 362 (500)
T COG2804 291 TIEDPVEYQLPG-INQVQVN-------PKIGLTFARALRAILRQDPDVIMVGEIRDLETAEIAVQAALTGHLVLSTLHTN 362 (500)
T ss_pred EeeCCeeeecCC-cceeecc-------cccCCCHHHHHHHHhccCCCeEEEeccCCHHHHHHHHHHHhcCCeEeeecccC
Confidence 999999874321 1111111 13466677889999999999999999999999999999999999999999999
Q ss_pred chhHHhh
Q 019702 236 WLENIIK 242 (337)
Q Consensus 236 ~~~~~~~ 242 (337)
+....+.
T Consensus 363 da~~ai~ 369 (500)
T COG2804 363 DAPGAIT 369 (500)
T ss_pred chHHHHH
Confidence 8766543
No 394
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=99.74 E-value=2.2e-16 Score=151.18 Aligned_cols=215 Identities=18% Similarity=0.177 Sum_probs=145.6
Q ss_pred HHhcccCCCCeeEEEEecCCccEEEEeCccCceeccCCCCCHHHHHHHHHHHhccCC--------CcceEecCceeEEEE
Q 019702 18 RLQNDSKRGQLLEVILDLGRLPEARYLGEFGGKYLRSTEVSVEELEYAQSAVGEFGG--------DNRAGIEGTLHRISA 89 (337)
Q Consensus 18 ~l~~~~~~~~~~ei~l~~g~~~~~~~~g~~~~~~~~~~~~t~~~l~~~~~~~~~~~~--------~~~~~~~g~~~rv~~ 89 (337)
.|+++..+.+++||.++....+.++..|.+. ... .+++.++++.++..+..+.+ ..++.+++ ..|+++
T Consensus 13 ~l~~~l~Dp~V~EI~iN~~~~V~v~~~g~~~--~~~-~~l~~~~~~~l~~~~a~~~~~~~~~~~Pil~a~Lpd-G~Rv~~ 88 (344)
T PRK13851 13 PVLEWLDDPRTEEVAINRPGEAFVRQAGVFT--KFP-LPLSYDDLEDIAILAGALRKQDVGPRNPLCATELPG-GERLQI 88 (344)
T ss_pred hHHHHhcCCCCEEEEECCCCeEEEEECCEEE--EcC-CCCCHHHHHHHHHHHHHhcCCccccCCcEEEEECCC-CeEEEE
Confidence 3455555688999999999989888777643 333 36899999987766543321 22333332 156666
Q ss_pred Ee----eCCCcEeeEEEEECCccccchhh---------------------------------------hhhcccCCCEEE
Q 019702 90 IR----SRKGAIVGLTCRVGRAVSGHIDM---------------------------------------VYDLLHYGKSIL 126 (337)
Q Consensus 90 ~~----~~~g~i~~l~~r~~~~~~~~~~~---------------------------------------l~~~v~~g~~v~ 126 (337)
.. ..+.. ++++|..+.....++. +...+..+..++
T Consensus 89 v~pP~~~~g~~--sitIRk~~~~~~tl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~~~nil 166 (344)
T PRK13851 89 CLPPTVPSGTV--SLTIRRPSSRVSELKEVSSRYDASRWNQWQERRKRRDQLDEAILRHYDNGDLEAFLHACVVGRLTML 166 (344)
T ss_pred EecccccCCce--EEEEEccCCCCCCHHHHHhhhcccccccccccccccchhhhhhhhccccHHHHHHHHHHHHcCCeEE
Confidence 65 23334 7888886554211221 333466788999
Q ss_pred EEcCCCCcHHHHHHHHHccccccCCCeEEEEcCCcccccCCCCcccc-ccc-chhccCCCcchhHHHHHHHHHhhCCcEE
Q 019702 127 FVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSA-IGT-ARRMQVPEPSLQHKVMIEAVENHMPEVI 204 (337)
Q Consensus 127 IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~~~~ei~~~~~~~~~~-~~~-~~~~~~~S~g~k~r~~ia~al~~~P~vl 204 (337)
|.||+|||||||+++|++.+++ ..+++++++..|+.. ++.. ... ........++....-++..+|+++||.|
T Consensus 167 I~G~tGSGKTTll~aLl~~i~~--~~rivtiEd~~El~l----~~~~~v~l~~~~~~~~~~~~t~~~ll~~~LR~~pD~I 240 (344)
T PRK13851 167 LCGPTGSGKTTMSKTLISAIPP--QERLITIEDTLELVI----PHENHVRLLYSKNGAGLGAVTAEHLLQASLRMRPDRI 240 (344)
T ss_pred EECCCCccHHHHHHHHHcccCC--CCCEEEECCCccccC----CCCCEEEEEeeccccCcCccCHHHHHHHHhcCCCCeE
Confidence 9999999999999999999987 467888999888753 2111 110 0111122344556678899999999999
Q ss_pred EEcCCCCHHHHHHHHHHHhcCCe-EEEEEcCcchhHHhhchHH
Q 019702 205 IVDEIGTEAEAHACRSIAERGVM-LIGTAHGEWLENIIKNPIL 246 (337)
Q Consensus 205 ilDEp~~~ld~~~l~~~~~~G~t-vi~t~H~~~~~~~~~d~v~ 246 (337)
+++|.++.+..+++ +++.+|+. ++.|.|..+..+.+. |+.
T Consensus 241 ivGEiR~~ea~~~l-~a~~tGh~G~ltTiHa~s~~~a~~-Rl~ 281 (344)
T PRK13851 241 LLGEMRDDAAWAYL-SEVVSGHPGSISTIHGANPVQGFK-KLF 281 (344)
T ss_pred EEEeeCcHHHHHHH-HHHHhCCCcEEECCCCCCHHHHHH-HHH
Confidence 99999998755544 55678886 899999998665543 444
No 395
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=99.74 E-value=2.6e-16 Score=150.77 Aligned_cols=213 Identities=16% Similarity=0.201 Sum_probs=146.2
Q ss_pred hcccCCCCeeEEEEecCCccEEEEeCccCceeccCCCCCHHHHHHHHHHHhccCC----CcceEecCc---eeEEEEEee
Q 019702 20 QNDSKRGQLLEVILDLGRLPEARYLGEFGGKYLRSTEVSVEELEYAQSAVGEFGG----DNRAGIEGT---LHRISAIRS 92 (337)
Q Consensus 20 ~~~~~~~~~~ei~l~~g~~~~~~~~g~~~~~~~~~~~~t~~~l~~~~~~~~~~~~----~~~~~~~g~---~~rv~~~~~ 92 (337)
+++..+.+++||.+.....+++...+.+ ........+.+++..+++++..+.+ ...+.+++. .+|++++..
T Consensus 56 ~~ll~d~~VtdI~vng~~~v~v~~~~~~--~~~~~~f~~~~~~~~l~~~la~~~g~~l~~~~P~~d~~l~~g~Rv~~~~~ 133 (340)
T TIGR03819 56 EPLLADPGVTDVLVNGPDEVWVDRGEGL--ERTDVRFPDEAAVRRLAQRLAAAAGRRLDDAQPWVDGRLPDGTRLHAVLP 133 (340)
T ss_pred HHHHhCCCCEEEEEcCCCEEEEEECCeE--EEcCCCcCCHHHHHHHHHHHHHHcCCcccCCCCeeEeECCCCEEEEEEec
Confidence 3344467899999999998888754432 2333345689999999887743322 234445443 279999874
Q ss_pred ---CCCcEeeEEEEECCccccchhh--------------hhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEE
Q 019702 93 ---RKGAIVGLTCRVGRAVSGHIDM--------------VYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVV 155 (337)
Q Consensus 93 ---~~g~i~~l~~r~~~~~~~~~~~--------------l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~ 155 (337)
..|+ .+++|..+.....++. +...+..+..++|+|++|||||||++++++++++. .+++
T Consensus 134 pvs~~g~--~i~IR~~~~~~~tl~~l~~~g~~~~~~~~~L~~~v~~~~~ili~G~tGsGKTTll~al~~~i~~~--~riv 209 (340)
T TIGR03819 134 PVATDGT--CLSLRVPRPRTFTLDELVASGTFPPGVARLLRAIVAARLAFLISGGTGSGKTTLLSALLALVAPD--ERIV 209 (340)
T ss_pred CccCCCc--EEEEEeeCCccCCHHHHHHcCCCCHHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHccCCCC--CcEE
Confidence 3567 7999987544322222 23345677899999999999999999999999874 6788
Q ss_pred EEcCCcccccCCCCcccccccchhccC--CCcchhHHHHHHHHHhhCCcEEEEcCCCCHHHHHHHHHHHhcCCe-EEEEE
Q 019702 156 IVDTSNEIGGDGDIPHSAIGTARRMQV--PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRSIAERGVM-LIGTA 232 (337)
Q Consensus 156 ~v~~~~ei~~~~~~~~~~~~~~~~~~~--~S~g~k~r~~ia~al~~~P~vlilDEp~~~ld~~~l~~~~~~G~t-vi~t~ 232 (337)
++++..|+... .++ ......+... .+++....-++..+|+++||+|+++|.+..+-.++ .++..+||. ++.|.
T Consensus 210 ~iEd~~El~~~--~~~-~~~l~~r~~~~~g~~~~t~~~ll~~aLR~~PD~IivGEiRg~Ea~~~-l~a~~tGh~G~~tTi 285 (340)
T TIGR03819 210 LVEDAAELRPD--HPH-VVRLEARPANVEGAGAVTLTDLVRQALRMRPDRIVVGEVRGAEVVDL-LAALNTGHDGGAGTL 285 (340)
T ss_pred EECCcceecCC--CCC-eeeEEeccccccCcCccCHHHHHHHHhccCCCeEEEeCcCcHHHHHH-HHHHHcCCCceEEee
Confidence 88988888532 111 1111111111 12345566789999999999999999999865554 566789996 79999
Q ss_pred cCcchhHHhh
Q 019702 233 HGEWLENIIK 242 (337)
Q Consensus 233 H~~~~~~~~~ 242 (337)
|..+..+.+.
T Consensus 286 HA~s~~~~~~ 295 (340)
T TIGR03819 286 HANSPADVPA 295 (340)
T ss_pred CCCCHHHHHH
Confidence 9998666443
No 396
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.73 E-value=3e-18 Score=152.65 Aligned_cols=137 Identities=12% Similarity=0.097 Sum_probs=95.2
Q ss_pred hhhhhhcccCCC-EEEEEcCCCCcHHHHHHHHH--------ccccccCC-CeEEEEcCCcccccCCCCcccccccchhcc
Q 019702 112 IDMVYDLLHYGK-SILFVGRPGVGKTTVMREIA--------RVLSDEFQ-KRVVIVDTSNEIGGDGDIPHSAIGTARRMQ 181 (337)
Q Consensus 112 ~~~l~~~v~~g~-~v~IiGpnGsGKTTLL~~l~--------gll~~~~~-~~i~~v~~~~ei~~~~~~~~~~~~~~~~~~ 181 (337)
+-++++.+.+|+ .++|+|||||||||||+.|+ |...|... ..+.+.++--... ... .. ......
T Consensus 17 ~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~~~~~~~~~~~~~l---g~~-~~--l~~~~s 90 (200)
T cd03280 17 VVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEGSSLPVFENIFADI---GDE-QS--IEQSLS 90 (200)
T ss_pred eEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccccccCcCccEEEEec---Cch-hh--hhcCcc
Confidence 446778888885 79999999999999999999 54444311 1111111110000 000 00 112345
Q ss_pred CCCcchhHHHHHHHHHhhCCcEEEEcCCCCHHHHH--------HHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCc
Q 019702 182 VPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAH--------ACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGV 253 (337)
Q Consensus 182 ~~S~g~k~r~~ia~al~~~P~vlilDEp~~~ld~~--------~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G 253 (337)
.+|+|++++..++++ +.+|+++++|||++++|.. .+..+.+.|.++|++||+.+ ...++++++ .+.+|
T Consensus 91 ~fs~g~~~~~~i~~~-~~~p~llllDEp~~glD~~~~~~i~~~~l~~l~~~~~~vi~~tH~~~-l~~~~d~~~--~l~~g 166 (200)
T cd03280 91 TFSSHMKNIARILQH-ADPDSLVLLDELGSGTDPVEGAALAIAILEELLERGALVIATTHYGE-LKAYAYKRE--GVENA 166 (200)
T ss_pred hHHHHHHHHHHHHHh-CCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECCHHH-HHHHHhcCC--CeEEE
Confidence 568999999988877 4799999999999999853 23445566899999999854 557899998 88889
Q ss_pred eEEEe
Q 019702 254 DTVTL 258 (337)
Q Consensus 254 ~iv~~ 258 (337)
+++..
T Consensus 167 ~l~~~ 171 (200)
T cd03280 167 SMEFD 171 (200)
T ss_pred EEEEe
Confidence 98766
No 397
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=99.73 E-value=4.9e-16 Score=147.35 Aligned_cols=214 Identities=20% Similarity=0.236 Sum_probs=145.9
Q ss_pred HHHhcccCCCCeeEEEEecCCccEEEEeCccCceeccCCCCCHHHHHHHHHHHhccC----CCcceEecCce----eEEE
Q 019702 17 DRLQNDSKRGQLLEVILDLGRLPEARYLGEFGGKYLRSTEVSVEELEYAQSAVGEFG----GDNRAGIEGTL----HRIS 88 (337)
Q Consensus 17 ~~l~~~~~~~~~~ei~l~~g~~~~~~~~g~~~~~~~~~~~~t~~~l~~~~~~~~~~~----~~~~~~~~g~~----~rv~ 88 (337)
..|+++.+++.++||.+.....+++...|... .. ...++.++++.++..+..+. +..++.+.+++ .|++
T Consensus 20 ~~l~~~l~D~~V~eI~iN~~~~v~v~~~g~~~--~~-~~~l~~~~~~~~i~~lA~~~~~~~~~~~P~l~~~Lp~~g~Ri~ 96 (323)
T PRK13833 20 DQLCVALDDATVVEIMLNPDGKLFIERLGHGV--AP-AGEMSAAAAEVVIGSVAHALQSEADDERPIISGELPIGGHRFE 96 (323)
T ss_pred HHHHHHhcCCCcEEEEECCCCEEEEEECCceE--Ee-cCcCCHHHHHHHHHHHHHHhCCccCCCCceEEEEeCCCCEEEE
Confidence 33555556788999999998888887766432 22 24589999999887774332 23344444332 6888
Q ss_pred EEeeC--CCcEeeEEEEECCccc---------cc-----hhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHcccc--ccC
Q 019702 89 AIRSR--KGAIVGLTCRVGRAVS---------GH-----IDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLS--DEF 150 (337)
Q Consensus 89 ~~~~~--~g~i~~l~~r~~~~~~---------~~-----~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~--~~~ 150 (337)
++... .|+ .+++|..+... +. .+-+...+..+..++|.|++|||||||+++|++.+. |.
T Consensus 97 ~~~pp~~~~~--~~~IRk~~~~~~tl~~lv~~g~~~~~~~~~L~~~v~~~~nilI~G~tGSGKTTll~aL~~~i~~~~~- 173 (323)
T PRK13833 97 GLLPPVVSGP--AFTIRRRASRLIPLDDYVTSKIMTEAQASVIRSAIDSRLNIVISGGTGSGKTTLANAVIAEIVASAP- 173 (323)
T ss_pred EEcCCCCCCc--eEEEECcCCCCCCHHHHHHcCCCCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHHhcCCC-
Confidence 76532 356 79998754333 11 122334456677899999999999999999999884 22
Q ss_pred CCeEEEEcCCcccccCCCCcccccccchhccCCCcchhHHHHHHHHHhhCCcEEEEcCCCCHHHHHHHHHHHhcCCe-EE
Q 019702 151 QKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRSIAERGVM-LI 229 (337)
Q Consensus 151 ~~~i~~v~~~~ei~~~~~~~~~~~~~~~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~~ld~~~l~~~~~~G~t-vi 229 (337)
..+++++++..|+... ..+.+. .. .+++....-++..+|+++||.|+++|.+..+-.. +.++..+||. ++
T Consensus 174 ~~rivtiEd~~El~~~---~~n~v~----l~-~~~~~~~~~lv~~aLR~~PD~IivGEiRg~ea~~-~l~a~~tGh~G~i 244 (323)
T PRK13833 174 EDRLVILEDTAEIQCA---AENAVA----LH-TSDTVDMARLLKSTMRLRPDRIIVGEVRDGAALT-LLKAWNTGHPGGV 244 (323)
T ss_pred CceEEEecCCcccccC---CCCEEE----ec-cCCCcCHHHHHHHHhCCCCCEEEEeecCCHHHHH-HHHHHcCCCCceE
Confidence 4688999998887531 111111 11 1334456678899999999999999999986444 5566788986 89
Q ss_pred EEEcCcchhHHhhchHH
Q 019702 230 GTAHGEWLENIIKNPIL 246 (337)
Q Consensus 230 ~t~H~~~~~~~~~d~v~ 246 (337)
.|.|+.+..+.+ +|+.
T Consensus 245 tTiHA~s~~~a~-~Rl~ 260 (323)
T PRK13833 245 TTIHSNTAMSAL-RRLE 260 (323)
T ss_pred EEECCCCHHHHH-HHHH
Confidence 999999977655 3444
No 398
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.73 E-value=2.1e-17 Score=175.23 Aligned_cols=81 Identities=15% Similarity=0.155 Sum_probs=70.8
Q ss_pred cCCCcchhHHHHHHHHHhh---CCcEEEEcCCCCHHHH-------HHHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHh
Q 019702 181 QVPEPSLQHKVMIEAVENH---MPEVIIVDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLI 250 (337)
Q Consensus 181 ~~~S~g~k~r~~ia~al~~---~P~vlilDEp~~~ld~-------~~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll 250 (337)
..+|+||+||+.||++|+. +|+++||||||+++|. +.+.++.+.|.|||+++|+++++. .||+++ .|
T Consensus 827 ~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~~i~-~aD~ii--~L 903 (924)
T TIGR00630 827 TTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLDVIK-TADYII--DL 903 (924)
T ss_pred ccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-hCCEEE--Ee
Confidence 3469999999999999997 5999999999999994 445666777999999999999875 699999 89
Q ss_pred ------cCceEEEecCHHHH
Q 019702 251 ------GGVDTVTLGDEEAR 264 (337)
Q Consensus 251 ------~~G~iv~~g~~~~~ 264 (337)
++|++++.|+++++
T Consensus 904 gp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 904 GPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred cCCccCCCCEEEEeCCHHHh
Confidence 68999999999875
No 399
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.73 E-value=1.3e-17 Score=149.19 Aligned_cols=127 Identities=16% Similarity=0.106 Sum_probs=83.5
Q ss_pred cccCCCEEEEEcCCCCcHHHHHHHHH----ccccccCCC---------------eEEEEcCCc---ccccC--CCCccc-
Q 019702 118 LLHYGKSILFVGRPGVGKTTVMREIA----RVLSDEFQK---------------RVVIVDTSN---EIGGD--GDIPHS- 172 (337)
Q Consensus 118 ~v~~g~~v~IiGpnGsGKTTLL~~l~----gll~~~~~~---------------~i~~v~~~~---ei~~~--~~~~~~- 172 (337)
.+.+| +++|+||||||||||+.+|. |...++.+. .+.+..+.. .+... ..+..+
T Consensus 19 ~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~~~~~~~ 97 (204)
T cd03240 19 EFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSLAILENV 97 (204)
T ss_pred ecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEhhHhhce
Confidence 34455 99999999999999999995 777664221 122222211 00000 000000
Q ss_pred ------ccc--cchhccCCCcchhHH------HHHHHHHhhCCcEEEEcCCCCHHHHHHH--------HHHHhc-CCeEE
Q 019702 173 ------AIG--TARRMQVPEPSLQHK------VMIEAVENHMPEVIIVDEIGTEAEAHAC--------RSIAER-GVMLI 229 (337)
Q Consensus 173 ------~~~--~~~~~~~~S~g~k~r------~~ia~al~~~P~vlilDEp~~~ld~~~l--------~~~~~~-G~tvi 229 (337)
... ..+....+|+||+|+ +++++++..+|+++++|||++++|.... .++.+. |.++|
T Consensus 98 ~~~~~~~~~~~~~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~ii 177 (204)
T cd03240 98 IFCHQGESNWPLLDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLI 177 (204)
T ss_pred eeechHHHHHHHhcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEE
Confidence 000 012345689999996 6889999999999999999999995322 233344 78999
Q ss_pred EEEcCcchhHHhhchHH
Q 019702 230 GTAHGEWLENIIKNPIL 246 (337)
Q Consensus 230 ~t~H~~~~~~~~~d~v~ 246 (337)
++||+.+... .||+++
T Consensus 178 iitH~~~~~~-~~d~i~ 193 (204)
T cd03240 178 VITHDEELVD-AADHIY 193 (204)
T ss_pred EEEecHHHHh-hCCEEE
Confidence 9999998764 688887
No 400
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.73 E-value=1.2e-17 Score=152.78 Aligned_cols=65 Identities=15% Similarity=0.160 Sum_probs=52.0
Q ss_pred ccCCCcchhHHHHHHHHHhh----CCcEEEEcCCCCHHHHH-------HHHHHHhcCCeEEEEEcCcchhHHhhchHH
Q 019702 180 MQVPEPSLQHKVMIEAVENH----MPEVIIVDEIGTEAEAH-------ACRSIAERGVMLIGTAHGEWLENIIKNPIL 246 (337)
Q Consensus 180 ~~~~S~g~k~r~~ia~al~~----~P~vlilDEp~~~ld~~-------~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~ 246 (337)
...+|+||+||+++|++++. +|+++++|||++++|.. .+.++.+ +.++|+++|..+ ...+||+++
T Consensus 156 ~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~-~~~ii~~~h~~~-~~~~~d~i~ 231 (243)
T cd03272 156 MQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSD-GAQFITTTFRPE-LLEVADKFY 231 (243)
T ss_pred ccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH-HHhhCCEEE
Confidence 34579999999999999974 58999999999999953 3444433 778888888865 557899987
No 401
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.72 E-value=3.7e-17 Score=173.60 Aligned_cols=84 Identities=17% Similarity=0.183 Sum_probs=74.1
Q ss_pred cCCCcchhHHHHHHHHHhhCC---cEEEEcCCCCHHHH-------HHHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHh
Q 019702 181 QVPEPSLQHKVMIEAVENHMP---EVIIVDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLI 250 (337)
Q Consensus 181 ~~~S~g~k~r~~ia~al~~~P---~vlilDEp~~~ld~-------~~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll 250 (337)
..+|+||+||+.||++|..+| +++|||||++++|. +.+.++.+.|.|||+++|+++.+. .||+++ .|
T Consensus 829 ~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~~i~-~aD~ii--~L 905 (943)
T PRK00349 829 TTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLDVIK-TADWII--DL 905 (943)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH-hCCEEE--Ee
Confidence 346999999999999999999 99999999999994 345666677999999999999875 799999 88
Q ss_pred ------cCceEEEecCHHHHHHh
Q 019702 251 ------GGVDTVTLGDEEARARR 267 (337)
Q Consensus 251 ------~~G~iv~~g~~~~~~~~ 267 (337)
++|++++.|+++++...
T Consensus 906 gp~~G~~~G~Iv~~Gt~~el~~~ 928 (943)
T PRK00349 906 GPEGGDGGGEIVATGTPEEVAKV 928 (943)
T ss_pred cCCcCCCCCEEEEeCCHHHHHhC
Confidence 58999999999998764
No 402
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.72 E-value=4.2e-17 Score=180.37 Aligned_cols=83 Identities=13% Similarity=0.131 Sum_probs=73.2
Q ss_pred cCCCcchhHHHHHHHHHh---hCCcEEEEcCCCCHHHH-------HHHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHh
Q 019702 181 QVPEPSLQHKVMIEAVEN---HMPEVIIVDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLI 250 (337)
Q Consensus 181 ~~~S~g~k~r~~ia~al~---~~P~vlilDEp~~~ld~-------~~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll 250 (337)
..+|+||+||++||++|+ ++|+++||||||+++|. +.+..+++.|.|||+++|+++++ .+||+++ .|
T Consensus 808 ~tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~i-~~aDrVi--~L 884 (1809)
T PRK00635 808 SSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHVV-KVADYVL--EL 884 (1809)
T ss_pred ccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH-HhCCEEE--EE
Confidence 346999999999999997 69999999999999994 44566677899999999999988 7999999 88
Q ss_pred c------CceEEEecCHHHHHH
Q 019702 251 G------GVDTVTLGDEEARAR 266 (337)
Q Consensus 251 ~------~G~iv~~g~~~~~~~ 266 (337)
+ +|++++.|+|+++..
T Consensus 885 ~p~gg~~~G~iv~~Gtpeel~~ 906 (1809)
T PRK00635 885 GPEGGNLGGYLLASCSPEELIH 906 (1809)
T ss_pred ccCCCCCCCEEEEeCCHHHHHh
Confidence 5 789999999999875
No 403
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.71 E-value=5.1e-17 Score=153.79 Aligned_cols=157 Identities=11% Similarity=0.163 Sum_probs=113.2
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEcCCc------ccc------
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSN------EIG------ 164 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~~~~------ei~------ 164 (337)
++++.+.|.... -.+.++++.+++||++.|+|.|||||||+++.+.|+.+|+. +.|..-..+. ++.
T Consensus 325 lrnvrfay~~~~-FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~Pqs-G~I~ldg~pV~~e~ledYR~LfSav 402 (546)
T COG4615 325 LRNVRFAYQDNA-FHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQS-GEILLDGKPVSAEQLEDYRKLFSAV 402 (546)
T ss_pred eeeeeeccCccc-ceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCC-CceeECCccCCCCCHHHHHHHHHHH
Confidence 446666665432 23778999999999999999999999999999999999984 4554322211 110
Q ss_pred ------cC-----CCCcccc-c-ccchh---------------ccCCCcchhHHHHHHHHHhhCCcEEEEcCCCCHHHH-
Q 019702 165 ------GD-----GDIPHSA-I-GTARR---------------MQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEA- 215 (337)
Q Consensus 165 ------~~-----~~~~~~~-~-~~~~~---------------~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~~ld~- 215 (337)
+. ...+... + ....+ .-.+|.|||+|+++-.|+..+-+|+++||.-+..|+
T Consensus 403 FsDyhLF~~ll~~e~~as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPa 482 (546)
T COG4615 403 FSDYHLFDQLLGPEGKASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPA 482 (546)
T ss_pred hhhHhhhHhhhCCccCCChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCCeEEeehhhccCChH
Confidence 00 0001000 0 00000 113699999999999999999999999999998884
Q ss_pred -------HHHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEe
Q 019702 216 -------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 258 (337)
Q Consensus 216 -------~~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~ 258 (337)
..+-.++++|+||+++|||.. .-..+||.+ .+..|+++..
T Consensus 483 FRR~FY~~lLp~LK~qGKTI~aIsHDd~-YF~~ADrll--~~~~G~~~e~ 529 (546)
T COG4615 483 FRREFYQVLLPLLKEQGKTIFAISHDDH-YFIHADRLL--EMRNGQLSEL 529 (546)
T ss_pred HHHHHHHHHhHHHHHhCCeEEEEecCch-hhhhHHHHH--HHhcCceeec
Confidence 335556788999999999986 345799999 8999999876
No 404
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=99.71 E-value=1.4e-15 Score=144.47 Aligned_cols=214 Identities=16% Similarity=0.185 Sum_probs=145.4
Q ss_pred HHHhcccCCCCeeEEEEecCCccEEEEeCccCceeccCCCCCHHHHHHHHHHHhccCC----CcceEecCc----eeEEE
Q 019702 17 DRLQNDSKRGQLLEVILDLGRLPEARYLGEFGGKYLRSTEVSVEELEYAQSAVGEFGG----DNRAGIEGT----LHRIS 88 (337)
Q Consensus 17 ~~l~~~~~~~~~~ei~l~~g~~~~~~~~g~~~~~~~~~~~~t~~~l~~~~~~~~~~~~----~~~~~~~g~----~~rv~ 88 (337)
..|+++..++.++||.+.....+++...|... . ....++.++++.+++++..+.+ ...+.+..+ ..|++
T Consensus 24 ~~l~~~l~Dp~v~EI~iN~~~~V~v~~~g~~~--~-~~~~~~~~~~~~~~~~lA~~~g~~~~~~~P~l~~~lp~~G~Rv~ 100 (319)
T PRK13894 24 PELLAALNDPKTVEIMLNADGKLWQERLGEPM--R-CIGTLRVAQAQAIIETIAGYHGKEVTRSKPILEGELPLDGSRFA 100 (319)
T ss_pred HHHHHHhcCCCceEEEEcCCCEEEEEECCcEE--e-cCCCCCHHHHHHHHHHHHHHcCCcccCCCceEEEEcCCCCEEEE
Confidence 33455555688999999998888887777532 1 1235888999998887754422 334444332 25787
Q ss_pred EEee--CCCcEeeEEEEECCccccchh--------------hhhhcccCCCEEEEEcCCCCcHHHHHHHHHcccc--ccC
Q 019702 89 AIRS--RKGAIVGLTCRVGRAVSGHID--------------MVYDLLHYGKSILFVGRPGVGKTTVMREIARVLS--DEF 150 (337)
Q Consensus 89 ~~~~--~~g~i~~l~~r~~~~~~~~~~--------------~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~--~~~ 150 (337)
+... ..|+ .+++|..+.....++ -+...+..+..++|+|++|||||||+++|++.+. +.
T Consensus 101 ~~~~p~~~g~--~~~IRk~~~~~~tl~~l~~~g~~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll~aL~~~~~~~~~- 177 (319)
T PRK13894 101 GQLPPVVPAP--TFAIRKKAVAIFTLDQYVERGIMTAAQREAIIAAVRAHRNILVIGGTGSGKTTLVNAIINEMVIQDP- 177 (319)
T ss_pred EEcCCcCCCc--EEEEECCCCCCCCHHHHHhcCCCCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHhhhhcCC-
Confidence 7642 2456 789988654442222 2333466788999999999999999999998752 22
Q ss_pred CCeEEEEcCCcccccCCCCcccccccchhccCCCcchhHHHHHHHHHhhCCcEEEEcCCCCHHHHHHHHHHHhcCCe-EE
Q 019702 151 QKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRSIAERGVM-LI 229 (337)
Q Consensus 151 ~~~i~~v~~~~ei~~~~~~~~~~~~~~~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~~ld~~~l~~~~~~G~t-vi 229 (337)
..+++++++..|+... +...... . .+......-++..+|+++||+|+++|.++.+... +.++..+||. .+
T Consensus 178 ~~rivtIEd~~El~~~----~~~~v~~---~-~~~~~~~~~ll~~aLR~~PD~IivGEiR~~Ea~~-~l~A~~tGh~G~~ 248 (319)
T PRK13894 178 TERVFIIEDTGEIQCA----AENYVQY---H-TSIDVNMTALLKTTLRMRPDRILVGEVRGPEALD-LLMAWNTGHEGGA 248 (319)
T ss_pred CceEEEEcCCCccccC----CCCEEEE---e-cCCCCCHHHHHHHHhcCCCCEEEEeccCCHHHHH-HHHHHHcCCCceE
Confidence 4688999999888532 1111100 0 1223345568899999999999999999986544 4567789985 89
Q ss_pred EEEcCcchhHHhhchHH
Q 019702 230 GTAHGEWLENIIKNPIL 246 (337)
Q Consensus 230 ~t~H~~~~~~~~~d~v~ 246 (337)
.|.|..+..+.+. |+.
T Consensus 249 tTiHa~s~~~ai~-Rl~ 264 (319)
T PRK13894 249 ATLHANNAKAGLD-RLK 264 (319)
T ss_pred EEECCCCHHHHHH-HHH
Confidence 9999999776553 444
No 405
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.69 E-value=5e-17 Score=146.18 Aligned_cols=68 Identities=9% Similarity=-0.003 Sum_probs=53.7
Q ss_pred ccCCCcchhHHHHHHHHHhh----CCcEEEEcCCCCHHHHH-------HHHHHHhcCCeEEEEEcCcchhHHhhchHHHH
Q 019702 180 MQVPEPSLQHKVMIEAVENH----MPEVIIVDEIGTEAEAH-------ACRSIAERGVMLIGTAHGEWLENIIKNPILSD 248 (337)
Q Consensus 180 ~~~~S~g~k~r~~ia~al~~----~P~vlilDEp~~~ld~~-------~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ 248 (337)
...+|+|++||+++|+|++. .|+++++|||++++|.. .+.++ .++.++|++||+.+ +..+||+++
T Consensus 125 ~~~lS~G~~~r~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~-~~~~~~iivs~~~~-~~~~~d~v~-- 200 (212)
T cd03274 125 ISNLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKER-TKNAQFIVISLRNN-MFELADRLV-- 200 (212)
T ss_pred hhhcCHHHHHHHHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHH-cCCCEEEEEECcHH-HHHhCCEEE--
Confidence 45579999999999999974 47999999999999953 34443 34678899999964 567899988
Q ss_pred Hhc
Q 019702 249 LIG 251 (337)
Q Consensus 249 ll~ 251 (337)
++.
T Consensus 201 ~~~ 203 (212)
T cd03274 201 GIY 203 (212)
T ss_pred EEE
Confidence 654
No 406
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=99.68 E-value=1.3e-16 Score=157.15 Aligned_cols=149 Identities=19% Similarity=0.242 Sum_probs=108.3
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccC--------C--CeEEEEcCCcccccC
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEF--------Q--KRVVIVDTSNEIGGD 166 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~--------~--~~i~~v~~~~ei~~~ 166 (337)
++++++.-+....-.++++++.|..|+.++|+||||||||+|+|.|+|+++... + +.+.+++|++-....
T Consensus 436 ~e~v~l~tPt~g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~~~lfflPQrPYmt~G 515 (659)
T KOG0060|consen 436 FEEVSLSTPTNGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGPKDLFFLPQRPYMTLG 515 (659)
T ss_pred eeeeeecCCCCCceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCCCCceEEecCCCCcccc
Confidence 445666655422234788999999999999999999999999999999997442 2 347777776543211
Q ss_pred -----CCCccc------------cc----------------c------cchhccCCCcchhHHHHHHHHHhhCCcEEEEc
Q 019702 167 -----GDIPHS------------AI----------------G------TARRMQVPEPSLQHKVMIEAVENHMPEVIIVD 207 (337)
Q Consensus 167 -----~~~~~~------------~~----------------~------~~~~~~~~S~g~k~r~~ia~al~~~P~vlilD 207 (337)
-.+|-. .+ + .....+++|+|++||+++||.+.++|++-+||
T Consensus 516 TLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~kPk~AiLD 595 (659)
T KOG0060|consen 516 TLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLFYHKPKFAILD 595 (659)
T ss_pred chhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHHHHhcCCceEEee
Confidence 001100 00 0 01345678999999999999999999999999
Q ss_pred CCCCHHHH--H--HHHHHHhcCCeEEEEEcCcchhHHhhchHH
Q 019702 208 EIGTEAEA--H--ACRSIAERGVMLIGTAHGEWLENIIKNPIL 246 (337)
Q Consensus 208 Ep~~~ld~--~--~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~ 246 (337)
|-|++.+. + .-+..++.|+|.|.++|-.++. .+.+-++
T Consensus 596 E~TSAv~~dvE~~~Yr~~r~~giT~iSVgHRkSL~-kfHd~~L 637 (659)
T KOG0060|consen 596 ECTSAVTEDVEGALYRKCREMGITFISVGHRKSLW-KFHDYVL 637 (659)
T ss_pred chhhhccHHHHHHHHHHHHHcCCeEEEeccHHHHH-hhhhEEE
Confidence 99998763 3 2344567799999999998854 5666666
No 407
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.67 E-value=4.8e-17 Score=172.76 Aligned_cols=160 Identities=18% Similarity=0.222 Sum_probs=113.9
Q ss_pred EEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHcccccc-----------------CCCeEEEEcCCcc-c
Q 019702 102 CRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDE-----------------FQKRVVIVDTSNE-I 163 (337)
Q Consensus 102 ~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~-----------------~~~~i~~v~~~~e-i 163 (337)
+++.+.....+++++-.+.||..++|+|++||||||||+.|+|-..-. ..+.++|++|..- +
T Consensus 797 ~~~qG~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~ 876 (1391)
T KOG0065|consen 797 MPIQGGTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARVSGYVEQQDIHS 876 (1391)
T ss_pred ccccccceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhccccceeecccccC
Confidence 333334445699999999999999999999999999999999974311 1234445544311 0
Q ss_pred cc-----------CCCCccc----c--------cc--cc-----hhccC----CCcchhHHHHHHHHHhhCC-cEEEEcC
Q 019702 164 GG-----------DGDIPHS----A--------IG--TA-----RRMQV----PEPSLQHKVMIEAVENHMP-EVIIVDE 208 (337)
Q Consensus 164 ~~-----------~~~~~~~----~--------~~--~~-----~~~~~----~S~g~k~r~~ia~al~~~P-~vlilDE 208 (337)
.. ....|.. . +. .+ .-++. +|..||+|+.|+--|+.+| -+|+|||
T Consensus 877 ~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVELvA~P~~ilFLDE 956 (1391)
T KOG0065|consen 877 PELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVELVANPSSILFLDE 956 (1391)
T ss_pred cccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEEEecCCceeEEecC
Confidence 00 0000000 0 00 00 11223 6889999999999999999 8999999
Q ss_pred CCCHHHH-------HHHHHHHhcCCeEEEEEcCcch-hHHhhchHHHHHhc-CceEEEecCHHH
Q 019702 209 IGTEAEA-------HACRSIAERGVMLIGTAHGEWL-ENIIKNPILSDLIG-GVDTVTLGDEEA 263 (337)
Q Consensus 209 p~~~ld~-------~~l~~~~~~G~tvi~t~H~~~~-~~~~~d~v~~~ll~-~G~iv~~g~~~~ 263 (337)
||+|||. +.++.++.+|.||+.|-|..+. +-..-|+++ ||+ +|+.|..|++.+
T Consensus 957 PTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LL--LLkrGGqtVY~G~lG~ 1018 (1391)
T KOG0065|consen 957 PTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELL--LLKRGGQTVYFGPLGE 1018 (1391)
T ss_pred CCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHH--HHhcCCeEEEecCccc
Confidence 9999994 5578888999999999999973 334578888 675 789999999875
No 408
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.67 E-value=8.7e-17 Score=143.11 Aligned_cols=128 Identities=9% Similarity=0.045 Sum_probs=80.8
Q ss_pred hcccCCCEEEEEcCCCCcHHHHHHHHHccccccC------------------CCeEEEEcCCcccccC--CCCccccc--
Q 019702 117 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEF------------------QKRVVIVDTSNEIGGD--GDIPHSAI-- 174 (337)
Q Consensus 117 ~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~------------------~~~i~~v~~~~ei~~~--~~~~~~~~-- 174 (337)
+.+.+| +.+|+||||||||||+.+|.-.+.... ...+.+..+....... ....+..+
T Consensus 17 l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 95 (198)
T cd03276 17 IEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKASDTNRGSSLKDLIKDGESSAKITVTLKNQGLDANPLCVLSQDMARS 95 (198)
T ss_pred EecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCcccccccccHHHHhhCCCCeEEEEEEEEcCCccCCcCCHHHHHHHHH
Confidence 334444 779999999999999999985432210 0111111111111000 00000000
Q ss_pred ------ccchhccCCCcchhHHHHHHHHH----hhCCcEEEEcCCCCHHHH-------HHHHHHHhc---CCeEEEEEcC
Q 019702 175 ------GTARRMQVPEPSLQHKVMIEAVE----NHMPEVIIVDEIGTEAEA-------HACRSIAER---GVMLIGTAHG 234 (337)
Q Consensus 175 ------~~~~~~~~~S~g~k~r~~ia~al----~~~P~vlilDEp~~~ld~-------~~l~~~~~~---G~tvi~t~H~ 234 (337)
...+....+|+||+||+++++|+ +++|+++++|||++++|. +.+.++.+. +.+|++++|+
T Consensus 96 ~l~~~~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~~~l~~~~~~~~~~~~iii~th~ 175 (198)
T cd03276 96 FLTSNKAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKISTDLLVKEAKKQPGRQFIFITPQD 175 (198)
T ss_pred HhccccccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHHHHHHHHHHhcCCCcEEEEEECCc
Confidence 01234556899999999999999 589999999999999995 334444332 3589999999
Q ss_pred cchhHHhhchHH
Q 019702 235 EWLENIIKNPIL 246 (337)
Q Consensus 235 ~~~~~~~~d~v~ 246 (337)
++.+..+ |++.
T Consensus 176 ~~~i~~~-d~v~ 186 (198)
T cd03276 176 ISGLASS-DDVK 186 (198)
T ss_pred ccccccc-ccee
Confidence 9988665 7766
No 409
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.67 E-value=1.6e-16 Score=156.69 Aligned_cols=148 Identities=19% Similarity=0.188 Sum_probs=113.8
Q ss_pred hhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCe--------------------EEEEcCCccccc---CCC
Q 019702 112 IDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKR--------------------VVIVDTSNEIGG---DGD 168 (337)
Q Consensus 112 ~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~--------------------i~~v~~~~ei~~---~~~ 168 (337)
+++++|.+.+||+++|.|--|||+|-|+++|.|..++. .+. +.|+++...-.+ ...
T Consensus 275 ~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~-~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~s 353 (500)
T COG1129 275 VRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPAS-SGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMS 353 (500)
T ss_pred eeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCC-CceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCCCc
Confidence 67899999999999999999999999999999976654 222 334433211000 000
Q ss_pred Ccccc-------------cc---------------------cchhccCCCcchhHHHHHHHHHhhCCcEEEEcCCCCHHH
Q 019702 169 IPHSA-------------IG---------------------TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAE 214 (337)
Q Consensus 169 ~~~~~-------------~~---------------------~~~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~~ld 214 (337)
+..+. +. .......+|||.|||+.||+.|..+|++|||||||.+.|
T Consensus 354 I~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvlarwL~~~p~vLilDEPTRGID 433 (500)
T COG1129 354 IAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLARWLATDPKVLILDEPTRGID 433 (500)
T ss_pred HHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhHHHHHHHhcCCCEEEECCCCcCcc
Confidence 00000 00 002344579999999999999999999999999999999
Q ss_pred H-------HHHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHH
Q 019702 215 A-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEE 262 (337)
Q Consensus 215 ~-------~~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~ 262 (337)
+ ..+.+++++|++||++|-++.++..+|||++ +|++|+++..-+.+
T Consensus 434 VGAK~eIy~li~~lA~~G~ail~iSSElpEll~~~DRIl--Vm~~Gri~~e~~~~ 486 (500)
T COG1129 434 VGAKAEIYRLIRELAAEGKAILMISSELPELLGLSDRIL--VMREGRIVGELDRE 486 (500)
T ss_pred cchHHHHHHHHHHHHHCCCEEEEEeCChHHHHhhCCEEE--EEECCEEEEEeccc
Confidence 3 5688899999999999999999999999999 99999999864444
No 410
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.66 E-value=1.5e-16 Score=152.09 Aligned_cols=142 Identities=19% Similarity=0.206 Sum_probs=102.5
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCC-------CeEEEEcCCcc-------
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ-------KRVVIVDTSNE------- 162 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~-------~~i~~v~~~~e------- 162 (337)
+.+++|.|....+ .+..++|-+.-...++|+||||.||||||+.|.|-+.|+.+ -+|+..++...
T Consensus 589 lH~VtFgy~gqkp-LFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnhrL~iG~FdQh~~E~L~~Ee 667 (807)
T KOG0066|consen 589 LHDVTFGYPGQKP-LFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNHRLRIGWFDQHANEALNGEE 667 (807)
T ss_pred cccccccCCCCCc-hhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhccceeeeechhhhhHHhhcccc
Confidence 3478888865553 57788888888889999999999999999999999998743 24565554211
Q ss_pred ----cc-cCCCCcccc----ccc--------chhccCCCcchhHHHHHHHHHhhCCcEEEEcCCCCHHHHHHHHHHH---
Q 019702 163 ----IG-GDGDIPHSA----IGT--------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRSIA--- 222 (337)
Q Consensus 163 ----i~-~~~~~~~~~----~~~--------~~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~~ld~~~l~~~~--- 222 (337)
+. -.+.+|+.. ++. .-.+..+||||+.||++|-.-+..||||||||||+++|++.+..++
T Consensus 668 tp~EyLqr~FNlpyq~ARK~LG~fGL~sHAHTikikdLSGGQKaRValaeLal~~PDvlILDEPTNNLDIESIDALaEAI 747 (807)
T KOG0066|consen 668 TPVEYLQRKFNLPYQEARKQLGTFGLASHAHTIKIKDLSGGQKARVALAELALGGPDVLILDEPTNNLDIESIDALAEAI 747 (807)
T ss_pred CHHHHHHHhcCCChHHHHHHhhhhhhhhccceEeeeecCCcchHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHH
Confidence 10 001223221 110 0223457999999999999999999999999999999976654443
Q ss_pred -hcCCeEEEEEcCcchhH
Q 019702 223 -ERGVMLIGTAHGEWLEN 239 (337)
Q Consensus 223 -~~G~tvi~t~H~~~~~~ 239 (337)
+....||++|||..++.
T Consensus 748 ney~GgVi~VsHDeRLi~ 765 (807)
T KOG0066|consen 748 NEYNGGVIMVSHDERLIV 765 (807)
T ss_pred HhccCcEEEEecccceee
Confidence 44568999999987653
No 411
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=99.66 E-value=1.3e-15 Score=135.47 Aligned_cols=118 Identities=18% Similarity=0.277 Sum_probs=90.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEcCCcccccCCCCcccccccchhccCCCcchhHHHHHHHHHhhCCc
Q 019702 123 KSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPE 202 (337)
Q Consensus 123 ~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~~~~ei~~~~~~~~~~~~~~~~~~~~S~g~k~r~~ia~al~~~P~ 202 (337)
++++|+||+||||||+++++++.+.+..++++.+++++.|+.... ......+..+........-+++++++++|+
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~~-----~~~~i~q~~vg~~~~~~~~~i~~aLr~~pd 76 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHES-----KRSLINQREVGLDTLSFENALKAALRQDPD 76 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccccC-----ccceeeecccCCCccCHHHHHHHHhcCCcC
Confidence 478999999999999999999999765567888888877753211 001111222222334455689999999999
Q ss_pred EEEEcCCCCHHHHHHHHHHHhcCCeEEEEEcCcchhHHhhchHH
Q 019702 203 VIIVDEIGTEAEAHACRSIAERGVMLIGTAHGEWLENIIKNPIL 246 (337)
Q Consensus 203 vlilDEp~~~ld~~~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~ 246 (337)
+|++|||++.+.+..+.+++.+|+.+++|+|+.+... ..+|++
T Consensus 77 ~ii~gEird~e~~~~~l~~a~~G~~v~~t~Ha~~~~~-~~~Rl~ 119 (198)
T cd01131 77 VILVGEMRDLETIRLALTAAETGHLVMSTLHTNSAAK-TIDRII 119 (198)
T ss_pred EEEEcCCCCHHHHHHHHHHHHcCCEEEEEecCCcHHH-HHhHHH
Confidence 9999999998888887788899999999999998764 567776
No 412
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.66 E-value=1.8e-16 Score=154.30 Aligned_cols=161 Identities=13% Similarity=0.085 Sum_probs=115.2
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEcCCcccccC----------
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGD---------- 166 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~~~~ei~~~---------- 166 (337)
+..+++.|..........+++.++.-..++++|+||+||||+++++.+-+.|.. .+..+-.+..+++.
T Consensus 365 i~~V~f~y~p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~r--gi~~~~~r~ri~~f~Qhhvd~l~~ 442 (582)
T KOG0062|consen 365 ISYVAFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTR--GIVGRHPRLRIKYFAQHHVDFLDK 442 (582)
T ss_pred EEeeeccCCCcchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCccc--ceeeecccceecchhHhhhhHHHH
Confidence 445667776555333566777777778899999999999999999999888752 22222222222110
Q ss_pred ------------CCCccccc-------cc-----chhccCCCcchhHHHHHHHHHhhCCcEEEEcCCCCHHHHHHHHHH-
Q 019702 167 ------------GDIPHSAI-------GT-----ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRSI- 221 (337)
Q Consensus 167 ------------~~~~~~~~-------~~-----~~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~~ld~~~l~~~- 221 (337)
.+.++..+ +. ...+..+|||||-|+++|.+..++|.+|+|||||+.||++.+..+
T Consensus 443 ~v~~vd~~~~~~pG~~~ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~ 522 (582)
T KOG0062|consen 443 NVNAVDFMEKSFPGKTEEEIRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALA 522 (582)
T ss_pred HhHHHHHHHHhCCCCCHHHHHHHHHhcCCCchhhhccccccCCcchhHHHHHHHhcCCCcEEEecCCCccccHHHHHHHH
Confidence 01111111 00 122456899999999999999999999999999999998665443
Q ss_pred ---HhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEe-cCH
Q 019702 222 ---AERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL-GDE 261 (337)
Q Consensus 222 ---~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~-g~~ 261 (337)
..-+-.||++|||.+++..+|+.++ +.++|++... |+.
T Consensus 523 ~Al~~F~GGVv~VSHd~~fi~~~c~E~W--vve~g~vt~ieg~~ 564 (582)
T KOG0062|consen 523 KALKNFNGGVVLVSHDEEFISSLCKELW--VVEDGKVTPIEGGI 564 (582)
T ss_pred HHHHhcCCcEEEEECcHHHHhhcCceeE--EEcCCcEEeeeccH
Confidence 3446689999999999999999999 8999987654 444
No 413
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=99.66 E-value=6.1e-15 Score=136.87 Aligned_cols=156 Identities=22% Similarity=0.289 Sum_probs=114.8
Q ss_pred cceEecCc--eeEEEEEeeCCCcEeeEEEEECCccc--cchhhh----------hhcc-cCCCEEEEEcCCCCcHHHHHH
Q 019702 76 NRAGIEGT--LHRISAIRSRKGAIVGLTCRVGRAVS--GHIDMV----------YDLL-HYGKSILFVGRPGVGKTTVMR 140 (337)
Q Consensus 76 ~~~~~~g~--~~rv~~~~~~~g~i~~l~~r~~~~~~--~~~~~l----------~~~v-~~g~~v~IiGpnGsGKTTLL~ 140 (337)
.++.+.+. .+|++.+....|. .+++|..+... ..++.+ ...+ .++++++|.||+||||||+++
T Consensus 21 ~~~~~~~~~~~~Rv~~~p~~~G~--~~~iR~~~~~~~~~~l~~lg~~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~l~ 98 (264)
T cd01129 21 IRLKLKGREIDLRVSTLPTIYGE--SVVLRILDKKNQILDLEKLGLKPENLEIFRKLLEKPHGIILVTGPTGSGKTTTLY 98 (264)
T ss_pred EEEEECCcEEEEEEEEeecCCCC--EEEEEEeCCccCCCCHHHcCCCHHHHHHHHHHHhcCCCEEEEECCCCCcHHHHHH
Confidence 34445554 5899999988888 89999965432 112222 1223 356799999999999999999
Q ss_pred HHHccccccCCCeEEEEcCCcccccCCCCcccccccchhccCCCcchhHHHHHHHHHhhCCcEEEEcCCCCHHHHHHHHH
Q 019702 141 EIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRS 220 (337)
Q Consensus 141 ~l~gll~~~~~~~i~~v~~~~ei~~~~~~~~~~~~~~~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~~ld~~~l~~ 220 (337)
++...+.+. ..++++++++.|+.... +.+..+. ...+....-++..+|+++||+|+++|+++...+.++.+
T Consensus 99 all~~i~~~-~~~iitiEdp~E~~~~~-~~q~~v~-------~~~~~~~~~~l~~~lR~~PD~i~vgEiR~~e~a~~~~~ 169 (264)
T cd01129 99 SALSELNTP-EKNIITVEDPVEYQIPG-INQVQVN-------EKAGLTFARGLRAILRQDPDIIMVGEIRDAETAEIAVQ 169 (264)
T ss_pred HHHhhhCCC-CCeEEEECCCceecCCC-ceEEEeC-------CcCCcCHHHHHHHHhccCCCEEEeccCCCHHHHHHHHH
Confidence 998877643 57899999988875321 1111111 12345567789999999999999999999998888888
Q ss_pred HHhcCCeEEEEEcCcchhHHhh
Q 019702 221 IAERGVMLIGTAHGEWLENIIK 242 (337)
Q Consensus 221 ~~~~G~tvi~t~H~~~~~~~~~ 242 (337)
++.+|+.++.|.|..+..+.+.
T Consensus 170 aa~tGh~v~tTlHa~~~~~ai~ 191 (264)
T cd01129 170 AALTGHLVLSTLHTNDAPGAIT 191 (264)
T ss_pred HHHcCCcEEEEeccCCHHHHHH
Confidence 8999999999999999766443
No 414
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.65 E-value=3e-16 Score=144.55 Aligned_cols=65 Identities=12% Similarity=0.106 Sum_probs=52.1
Q ss_pred ccCCCcchhHHHHHHHHHh----hCCcEEEEcCCCCHHHHH-------HHHHHHhcCCeEEEEEcCcchhHHhhchHH
Q 019702 180 MQVPEPSLQHKVMIEAVEN----HMPEVIIVDEIGTEAEAH-------ACRSIAERGVMLIGTAHGEWLENIIKNPIL 246 (337)
Q Consensus 180 ~~~~S~g~k~r~~ia~al~----~~P~vlilDEp~~~ld~~-------~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~ 246 (337)
...+|+|++||+++|++++ .+|+++++||||+++|.. .+.++ .+|.++|++||..+.. ..||+++
T Consensus 164 ~~~lS~G~~qr~~la~al~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~-~~g~~ii~iSH~~~~~-~~~d~v~ 239 (251)
T cd03273 164 LTELSGGQRSLVALSLILALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTH-FKGSQFIVVSLKEGMF-NNANVLF 239 (251)
T ss_pred ccccCHHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHH-cCCCEEEEEECCHHHH-HhCCEEE
Confidence 3457999999999999998 478999999999999953 23333 3588999999996544 5699887
No 415
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.65 E-value=2e-16 Score=145.43 Aligned_cols=68 Identities=9% Similarity=0.009 Sum_probs=56.3
Q ss_pred cCCCcchhHHHHHHHHHhhC----CcEEEEcCCCCHHHH-------HHHHHHHhcCCeEEEEEcCcchhHHhhchHHHHH
Q 019702 181 QVPEPSLQHKVMIEAVENHM----PEVIIVDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDL 249 (337)
Q Consensus 181 ~~~S~g~k~r~~ia~al~~~----P~vlilDEp~~~ld~-------~~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~l 249 (337)
..+|+|++++++++++++.+ |+++++|||++++|. +.+.++++.|.++|++||+.+.. ..||+++ +
T Consensus 154 ~~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~~~~-~~~d~i~--~ 230 (247)
T cd03275 154 DNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKEEFF-SKADALV--G 230 (247)
T ss_pred HHcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCHHHH-hhCCeEE--E
Confidence 45799999999999999875 999999999999995 34555555689999999998765 5799988 5
Q ss_pred hc
Q 019702 250 IG 251 (337)
Q Consensus 250 l~ 251 (337)
+.
T Consensus 231 ~~ 232 (247)
T cd03275 231 VY 232 (247)
T ss_pred EE
Confidence 53
No 416
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=99.64 E-value=4.2e-16 Score=151.95 Aligned_cols=153 Identities=14% Similarity=0.199 Sum_probs=107.1
Q ss_pred chhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHcccccc-------CCCeEEEEcCCcccccC-----------------
Q 019702 111 HIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDE-------FQKRVVIVDTSNEIGGD----------------- 166 (337)
Q Consensus 111 ~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~-------~~~~i~~v~~~~ei~~~----------------- 166 (337)
.+..++|.+++|..++|+||||||||+|+|+|.|+++-. ...++.|++|++-....
T Consensus 497 vv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P~~~~mFYIPQRPYms~gtlRDQIIYPdS~e~~~~ 576 (728)
T KOG0064|consen 497 LVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIPRPNNIFYIPQRPYMSGGTLRDQIIYPDSSEQMKR 576 (728)
T ss_pred eecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeeecCCCcceEeccCCCccCcCcccceeecCCcHHHHHh
Confidence 467889999999999999999999999999999998632 13457778877644311
Q ss_pred CCCccccccc--------------------chhccCCCcchhHHHHHHHHHhhCCcEEEEcCCCCHHH--H--HHHHHHH
Q 019702 167 GDIPHSAIGT--------------------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAE--A--HACRSIA 222 (337)
Q Consensus 167 ~~~~~~~~~~--------------------~~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~~ld--~--~~l~~~~ 222 (337)
.++..+++.. ...-+++|||+|||+++||.+.++|++-+|||-|++.. + ..+..++
T Consensus 577 kg~~d~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~yHrPkyalLDEcTsAvsidvE~~i~~~ak 656 (728)
T KOG0064|consen 577 KGYTDQDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMFYHRPKYALLDECTSAVSIDVEGKIFQAAK 656 (728)
T ss_pred cCCCHHHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHHHHHhcCcchhhhhhhhcccccchHHHHHHHHH
Confidence 0111111000 12345689999999999999999999999999999644 3 2345555
Q ss_pred hcCCeEEEEEcCcchhHHhhchHHHHHhcCce-EEEecCHHHHH
Q 019702 223 ERGVMLIGTAHGEWLENIIKNPILSDLIGGVD-TVTLGDEEARA 265 (337)
Q Consensus 223 ~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~-iv~~g~~~~~~ 265 (337)
..|.+.+.+||..+.. .+....+. ..+.|. -...-++++++
T Consensus 657 ~~gi~llsithrpslw-k~h~~ll~-~dg~g~~q~~~ln~~~rl 698 (728)
T KOG0064|consen 657 DAGISLLSITHRPSLW-KYHTHLLE-FDGEGGWQFRALNTEERL 698 (728)
T ss_pred hcCceEEEeecCccHH-HHHHHHHh-ccCCCCeeeccCChhhhc
Confidence 6799999999999855 46666664 444332 33333344444
No 417
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.64 E-value=5.2e-16 Score=133.73 Aligned_cols=123 Identities=14% Similarity=0.130 Sum_probs=81.7
Q ss_pred ccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEcCCcccccCCCCcccccccchhccCCCcchhHHHHHHHHHh
Q 019702 119 LHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVEN 198 (337)
Q Consensus 119 v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~~~~ei~~~~~~~~~~~~~~~~~~~~S~g~k~r~~ia~al~ 198 (337)
+.++.+++|+|||||||||+++++.-..-... .++.. ..+......++...........-+|+|+++++.+++++.
T Consensus 18 ~~~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~-~~~~~---~~~~~~g~~~~~~~~~~i~~~~~lS~G~~~~~~la~~L~ 93 (162)
T cd03227 18 FGEGSLTIITGPNGSGKSTILDAIGLALGGAQ-SATRR---RSGVKAGCIVAAVSAELIFTRLQLSGGEKELSALALILA 93 (162)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHHHHhcc-hhhhc---cCcccCCCcceeeEEEEehheeeccccHHHHHHHHHHHH
Confidence 33456999999999999999999877665432 11111 111100001111110001112337999999999999998
Q ss_pred h----CCcEEEEcCCCCHHHH-------HHHHHHHhcCCeEEEEEcCcchhHHhhchHH
Q 019702 199 H----MPEVIIVDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPIL 246 (337)
Q Consensus 199 ~----~P~vlilDEp~~~ld~-------~~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~ 246 (337)
. +|+++++|||++++|. +++.++..+|.++|++||+.+... .+|+++
T Consensus 94 ~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vii~TH~~~~~~-~~d~~~ 151 (162)
T cd03227 94 LASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLPELAE-LADKLI 151 (162)
T ss_pred hcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHH-hhhhEE
Confidence 7 7899999999999884 234444444789999999999775 577766
No 418
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.63 E-value=1.5e-16 Score=139.62 Aligned_cols=171 Identities=20% Similarity=0.193 Sum_probs=120.5
Q ss_pred EeeEEEEECC--ccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccC------------------------
Q 019702 97 IVGLTCRVGR--AVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEF------------------------ 150 (337)
Q Consensus 97 i~~l~~r~~~--~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~------------------------ 150 (337)
|.|+++.+.. ..+.+++.+++.+..||+-+++|.+|||||-..++|+|..+.+.
T Consensus 6 IrnL~IE~~TsqG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~RRk 85 (330)
T COG4170 6 IRNLTIEFKTSQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRERRK 85 (330)
T ss_pred ccceEEEEecCCCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHhhh
Confidence 4566666632 23356888999999999999999999999999999999987541
Q ss_pred --CCeEEEEcCCc--------cccc--CCCCcccc--------cc--------cc-------------hhccCCCcchhH
Q 019702 151 --QKRVVIVDTSN--------EIGG--DGDIPHSA--------IG--------TA-------------RRMQVPEPSLQH 189 (337)
Q Consensus 151 --~~~i~~v~~~~--------ei~~--~~~~~~~~--------~~--------~~-------------~~~~~~S~g~k~ 189 (337)
+..|..+.+.+ +++. ...+|... ++ .+ .....+..|+-|
T Consensus 86 ~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP~ElTeGE~Q 165 (330)
T COG4170 86 LVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPYELTEGECQ 165 (330)
T ss_pred hhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCcchhccCcce
Confidence 01111111111 0000 00011000 00 00 111234678999
Q ss_pred HHHHHHHHhhCCcEEEEcCCCCHHHH-------HHHHHHH-hcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCH
Q 019702 190 KVMIEAVENHMPEVIIVDEIGTEAEA-------HACRSIA-ERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDE 261 (337)
Q Consensus 190 r~~ia~al~~~P~vlilDEp~~~ld~-------~~l~~~~-~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~ 261 (337)
+++||.|++..|++||.||||+..+. .++..+. .+|.|++.++||......+||++- ++.-|+-+..+..
T Consensus 166 KVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~~is~W~d~i~--VlYCGQ~~ESa~~ 243 (330)
T COG4170 166 KVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKIN--VLYCGQTVESAPS 243 (330)
T ss_pred eeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHHHHHHHhhheE--EEEecccccccch
Confidence 99999999999999999999998772 3344444 458999999999999999999999 9999999999999
Q ss_pred HHHHHhhh
Q 019702 262 EARARRCQ 269 (337)
Q Consensus 262 ~~~~~~~~ 269 (337)
+++...+.
T Consensus 244 e~l~~~Ph 251 (330)
T COG4170 244 EELVTMPH 251 (330)
T ss_pred hHHhcCCC
Confidence 99887643
No 419
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.63 E-value=4.9e-16 Score=136.00 Aligned_cols=121 Identities=14% Similarity=0.126 Sum_probs=80.2
Q ss_pred CEEEEEcCCCCcHHHHHHHHHccccccCC-----CeEEEEcCCc---------ccccCCCCcccccccchhccCCCcchh
Q 019702 123 KSILFVGRPGVGKTTVMREIARVLSDEFQ-----KRVVIVDTSN---------EIGGDGDIPHSAIGTARRMQVPEPSLQ 188 (337)
Q Consensus 123 ~~v~IiGpnGsGKTTLL~~l~gll~~~~~-----~~i~~v~~~~---------ei~~~~~~~~~~~~~~~~~~~~S~g~k 188 (337)
.+.+|+||||||||++|.+|.=.+.-... .......+.. ++.+. .....+..-....++|+|++
T Consensus 23 ~~~~i~G~NGsGKSnil~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~f~--~~~~~~~~~~~~~~LS~Ge~ 100 (178)
T cd03239 23 SFNAIVGPNGSGKSNIVDAICFVLGGKAAKLRRGSLLFLAGGGVKAGINSASVEITFD--KSYFLVLQGKVEQILSGGEK 100 (178)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHcCcccccccCcchhhhcccccCCCCceEEEEEEEE--CceEEecCCcCcccCCHHHH
Confidence 38999999999999999998665432100 0000000000 00000 00001111133455899999
Q ss_pred HHHHHHHHHh----hCCcEEEEcCCCCHHHH-------HHHHHHHhcCCeEEEEEcCcchhHHhhchHH
Q 019702 189 HKVMIEAVEN----HMPEVIIVDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPIL 246 (337)
Q Consensus 189 ~r~~ia~al~----~~P~vlilDEp~~~ld~-------~~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~ 246 (337)
++++++++++ .+|+++++|||++++|. +.+.++.+.|.++|++||+.+.. ..+|+++
T Consensus 101 ~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~~~~-~~adrvi 168 (178)
T cd03239 101 SLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKEMF-ENADKLI 168 (178)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHH-hhCCeEE
Confidence 9999999996 68999999999999994 34555556689999999999866 4788877
No 420
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.63 E-value=3.3e-14 Score=134.83 Aligned_cols=216 Identities=18% Similarity=0.239 Sum_probs=150.2
Q ss_pred HhcccCCCCeeEEEEecCCccEEEEeCccCceec-cCCCCCHHHHHHHHHHHhccC----CCcceEecCc---eeEEEEE
Q 019702 19 LQNDSKRGQLLEVILDLGRLPEARYLGEFGGKYL-RSTEVSVEELEYAQSAVGEFG----GDNRAGIEGT---LHRISAI 90 (337)
Q Consensus 19 l~~~~~~~~~~ei~l~~g~~~~~~~~g~~~~~~~-~~~~~t~~~l~~~~~~~~~~~----~~~~~~~~g~---~~rv~~~ 90 (337)
|.++..+..++||.+....|+++.. .... ... +...++.+++..++.++.++. +...+-+..+ .+|+++.
T Consensus 18 l~p~l~D~~iedI~~n~~~~v~v~~-~~~~-~~~~~~~~~~~~~l~~~~~~~a~~~gk~is~~~Pi~~~~lp~g~Ri~i~ 95 (312)
T COG0630 18 LEPLLRDPRIEDIVVNGPGPVYVEH-KGGG-SYVTNIPFLTEEELDSLAIRLAQRSGKPISEANPILDATLPDGSRIQIV 95 (312)
T ss_pred cchhhcCCCceEEEecCCceEEEEE-cCCc-ceeccCccCCHHHHHHHHHHHHHHcCCCCCCCCCceEeEcCCCcEEEEE
Confidence 4555667889999999888665543 3221 122 335678899998887765442 2333333333 4788888
Q ss_pred eeC----CCcEeeEEEEECCccc--------------cchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCC
Q 019702 91 RSR----KGAIVGLTCRVGRAVS--------------GHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK 152 (337)
Q Consensus 91 ~~~----~g~i~~l~~r~~~~~~--------------~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~ 152 (337)
... +|. ++++|.....+ .....+++.++.+..+.|+|++||||||+|++++.+++|. .
T Consensus 96 ~~~~v~~~~~--s~~IRk~~~~~~t~~~l~~~gt~~~~~~ayL~~~ie~~~siii~G~t~sGKTt~lnall~~Ip~~--~ 171 (312)
T COG0630 96 LGPEVSPNGS--SFTIRKFSDEPITPEDLIEYGTISPEQAAYLWLAIEARKSIIICGGTASGKTTLLNALLDFIPPE--E 171 (312)
T ss_pred eCCCcCCCCC--cEEEEcCCCCCCCHHHHhhcCCCCHHHHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHhCCch--h
Confidence 733 455 78888766544 1234466778999999999999999999999999999884 7
Q ss_pred eEEEEcCCcccccCCCCcccc-cccc-hhccCCCcchhHHHHHHHHHhhCCcEEEEcCCCCHHHHHHHHHHHhcCCeEEE
Q 019702 153 RVVIVDTSNEIGGDGDIPHSA-IGTA-RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRSIAERGVMLIG 230 (337)
Q Consensus 153 ~i~~v~~~~ei~~~~~~~~~~-~~~~-~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~~ld~~~l~~~~~~G~tvi~ 230 (337)
++.++++..|+.. ++.. +... +.....+........+..|++++||+||++|....+ ...+.++..+||..+.
T Consensus 172 rivtIEdt~E~~~----~~~n~~~l~~r~~~~~~~~v~~~dll~aalR~rPd~IivgEvrg~e-~~~~~~a~~tGh~~is 246 (312)
T COG0630 172 RIVTIEDTPELKL----PHENWVQLVTREGESGSSEVSLEDLLRAALRQRPDYIIVGELRGRE-AFVLFQAMQTGHGTIS 246 (312)
T ss_pred cEEEEeccccccC----CCCCEEEEEecCCCCCccccCHHHHHHHHHhcCCCeEEEeeeecHH-HHHHHHHHhcCCCcee
Confidence 8999999888743 3222 1111 111111345577788999999999999999999985 4555566789999999
Q ss_pred EEcCcchhHHhhchHH
Q 019702 231 TAHGEWLENIIKNPIL 246 (337)
Q Consensus 231 t~H~~~~~~~~~d~v~ 246 (337)
|.|..+... .-+++.
T Consensus 247 T~ha~s~~~-~~~rl~ 261 (312)
T COG0630 247 TIHADSPEL-VLDRLT 261 (312)
T ss_pred EEecCCHHH-HHHHHh
Confidence 999998543 334444
No 421
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.62 E-value=1.7e-15 Score=132.46 Aligned_cols=161 Identities=18% Similarity=0.155 Sum_probs=113.3
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEcCC----------ccccc-
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTS----------NEIGG- 165 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~~~----------~ei~~- 165 (337)
++++.|.|.... +.+.++++.++.|...+++|.|||||||||++|+|----. ++.|.+.... ..+.+
T Consensus 16 vsgl~f~y~~~d-P~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~-~~~v~VlgrsaFhDt~l~~Sgdl~YL 93 (291)
T KOG2355|consen 16 VSGLQFKYKVSD-PIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVG-GGVVQVLGRSAFHDTSLESSGDLSYL 93 (291)
T ss_pred EeccEEecccCC-ceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCccccc-CCeEEEcCcCccccccccccCceeEe
Confidence 567888887555 3577888999999999999999999999999999964322 2223222110 00000
Q ss_pred ----------CCCCccc-ccc--------------------------cchhccCCCcchhHHHHHHHHHhhCCcEEEEcC
Q 019702 166 ----------DGDIPHS-AIG--------------------------TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDE 208 (337)
Q Consensus 166 ----------~~~~~~~-~~~--------------------------~~~~~~~~S~g~k~r~~ia~al~~~P~vlilDE 208 (337)
.+.+|-+ .+. ..-++...|.||++|+.|+..|.+.-+||+|||
T Consensus 94 GgeW~~~~~~agevplq~D~sae~mifgV~g~dp~Rre~LI~iLDIdl~WRmHkvSDGqrRRVQicMGLL~PfkVLLLDE 173 (291)
T KOG2355|consen 94 GGEWSKTVGIAGEVPLQGDISAEHMIFGVGGDDPERREKLIDILDIDLRWRMHKVSDGQRRRVQICMGLLKPFKVLLLDE 173 (291)
T ss_pred cccccccccccccccccccccHHHHHhhccCCChhHhhhhhhheeccceEEEeeccccchhhhHHHHhcccceeEEEeee
Confidence 0111110 000 001233459999999999999999999999999
Q ss_pred CCCHHHH----HHHHHH----HhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCH
Q 019702 209 IGTEAEA----HACRSI----AERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDE 261 (337)
Q Consensus 209 p~~~ld~----~~l~~~----~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~ 261 (337)
.|-.+|. +++.-+ -++|.||++.||-.+-.+.+...++ -+..|+++..-+.
T Consensus 174 VTVDLDVlARadLLeFlkeEce~RgatIVYATHIFDGLe~Wpthl~--yi~~Gkl~~~l~~ 232 (291)
T KOG2355|consen 174 VTVDLDVLARADLLEFLKEECEQRGATIVYATHIFDGLETWPTHLV--YIKSGKLVDNLKY 232 (291)
T ss_pred eEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeeccchhhcchhEE--EecCCeeeecccc
Confidence 9999994 333322 2459999999999998888999988 7899999874333
No 422
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.62 E-value=7.1e-16 Score=137.50 Aligned_cols=142 Identities=15% Similarity=0.097 Sum_probs=85.8
Q ss_pred hhhcccCCCEEEEEcCCCCcHHHHHHHHHcccc-ccCCCeEEEEcCCcccccCCC-Cccccc--ccchhccCCCcchhHH
Q 019702 115 VYDLLHYGKSILFVGRPGVGKTTVMREIARVLS-DEFQKRVVIVDTSNEIGGDGD-IPHSAI--GTARRMQVPEPSLQHK 190 (337)
Q Consensus 115 l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~-~~~~~~i~~v~~~~ei~~~~~-~~~~~~--~~~~~~~~~S~g~k~r 190 (337)
.++.+.+|+.++|+|||||||||||++|++..- ...+..+ ......++.... +.+... .........+.+++ +
T Consensus 22 ~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~--~~~~~~i~~~dqi~~~~~~~d~i~~~~s~~~~e~~-~ 98 (202)
T cd03243 22 NDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFV--PAESASIPLVDRIFTRIGAEDSISDGRSTFMAELL-E 98 (202)
T ss_pred eeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHHHHcCCCc--cccccccCCcCEEEEEecCcccccCCceeHHHHHH-H
Confidence 345567889999999999999999999994332 2111100 001111111000 000000 00011222344444 4
Q ss_pred HHHHHHHhhCCcEEEEcCCCCHHHHH--------HHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHH
Q 019702 191 VMIEAVENHMPEVIIVDEIGTEAEAH--------ACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEE 262 (337)
Q Consensus 191 ~~ia~al~~~P~vlilDEp~~~ld~~--------~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~ 262 (337)
+..+.++..+|+++++|||++++|.. .+..+.+.+.++|++||+.++.. .++++. .+..+++...++..
T Consensus 99 l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ll~~l~~~~~~vi~~tH~~~~~~-~~~~~~--~l~~~~~~~~~~~~ 175 (202)
T cd03243 99 LKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLLEKGCRTLFATHFHELAD-LPEQVP--GVKNLHMEELITTG 175 (202)
T ss_pred HHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEECChHHHHH-HhhcCC--CeEEEEEEEEecCC
Confidence 66667778899999999999988842 13344556899999999988765 555655 66777877776543
No 423
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.61 E-value=9e-16 Score=147.63 Aligned_cols=132 Identities=20% Similarity=0.270 Sum_probs=95.4
Q ss_pred ccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEE------EE--cCCccccc------------------CCCCccc
Q 019702 119 LHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVV------IV--DTSNEIGG------------------DGDIPHS 172 (337)
Q Consensus 119 v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~------~v--~~~~ei~~------------------~~~~~~~ 172 (337)
..+|++++|+||||-||||.+++|+|.+.|+.+..-. ++ ....|+.. ...+|..
T Consensus 97 pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~~~pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~QYVd~iPk~ 176 (591)
T COG1245 97 PRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQYVDLIPKV 176 (591)
T ss_pred CCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCCCCCCCHHHHHHHhhhhHHHHHHHHHHcCCcceecchHHHHHHHHH
Confidence 4679999999999999999999999999998432100 00 00000000 0000000
Q ss_pred c---c----------c--------------cchhccCCCcchhHHHHHHHHHhhCCcEEEEcCCCCHHHH-------HHH
Q 019702 173 A---I----------G--------------TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEA-------HAC 218 (337)
Q Consensus 173 ~---~----------~--------------~~~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~~ld~-------~~l 218 (337)
. + + ..+....+|||+-||++||+++..+.|+.++|||++-||+ ..+
T Consensus 177 ~KG~v~elLk~~de~g~~devve~l~L~nvl~r~v~~LSGGELQr~aIaa~l~rdADvY~FDEpsSyLDi~qRl~~ar~I 256 (591)
T COG1245 177 VKGKVGELLKKVDERGKFDEVVERLGLENVLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVI 256 (591)
T ss_pred hcchHHHHHHhhhhcCcHHHHHHHhcchhhhhhhhhhcCchHHHHHHHHHHHhccCCEEEEcCCcccccHHHHHHHHHHH
Confidence 0 0 0 0134556799999999999999999999999999999994 457
Q ss_pred HHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcC
Q 019702 219 RSIAERGVMLIGTAHGEWLENIIKNPILSDLIGG 252 (337)
Q Consensus 219 ~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~ 252 (337)
+++++.+++|+++.||+...+.++|-+. ++.+
T Consensus 257 rel~~~~k~ViVVEHDLavLD~lsD~vh--I~YG 288 (591)
T COG1245 257 RELAEDGKYVIVVEHDLAVLDYLSDFVH--ILYG 288 (591)
T ss_pred HHHhccCCeEEEEechHHHHHHhhheeE--EEec
Confidence 7788889999999999999998888776 6553
No 424
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=99.58 E-value=2.4e-14 Score=126.13 Aligned_cols=129 Identities=17% Similarity=0.246 Sum_probs=93.1
Q ss_pred chhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEcCCcccccCCCCcccccccchhc--cCCCcchh
Q 019702 111 HIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRM--QVPEPSLQ 188 (337)
Q Consensus 111 ~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~~~~ei~~~~~~~~~~~~~~~~~--~~~S~g~k 188 (337)
..+-+.+.+..|+.++|+||||||||||+++|+++++++ .+++++++..|+... .+ ..+....+. ...++...
T Consensus 14 ~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~--~~~i~ied~~E~~~~--~~-~~~~~~~~~~~~~~~~~~~ 88 (186)
T cd01130 14 QAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPD--ERIITIEDTAELQLP--HP-NWVRLVTRPGNVEGSGEVT 88 (186)
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCC--CCEEEECCccccCCC--CC-CEEEEEEecCCCCCCCccC
Confidence 366778889999999999999999999999999999874 566677776666431 01 111111011 11233445
Q ss_pred HHHHHHHHHhhCCcEEEEcCCCCHHHHHHHHHHHhcCCe-EEEEEcCcchhHHhhchHH
Q 019702 189 HKVMIEAVENHMPEVIIVDEIGTEAEAHACRSIAERGVM-LIGTAHGEWLENIIKNPIL 246 (337)
Q Consensus 189 ~r~~ia~al~~~P~vlilDEp~~~ld~~~l~~~~~~G~t-vi~t~H~~~~~~~~~d~v~ 246 (337)
..-++..++.++||+++++|.+..+... +.+++.+|+. ++.|.|..+..+.+ +|+.
T Consensus 89 ~~~~l~~~lR~~pd~i~igEir~~ea~~-~~~a~~tGh~g~~~T~Ha~s~~~~~-~Rl~ 145 (186)
T cd01130 89 MADLLRSALRMRPDRIIVGEVRGGEALD-LLQAMNTGHPGGMTTIHANSAEEAL-TRLE 145 (186)
T ss_pred HHHHHHHHhccCCCEEEEEccCcHHHHH-HHHHHhcCCCCceeeecCCCHHHHH-HHHH
Confidence 5667888999999999999999986554 4456789998 99999999966654 4444
No 425
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.57 E-value=2.1e-15 Score=144.35 Aligned_cols=153 Identities=18% Similarity=0.214 Sum_probs=104.5
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccc---cccCCCeEEEEcCCc------ccccC-
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVL---SDEFQKRVVIVDTSN------EIGGD- 166 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll---~~~~~~~i~~v~~~~------ei~~~- 166 (337)
|+++++.-..... +.+-++.+-.|..++++||||-||||||+.|+.-- +|. -.+.+.++.. .+...
T Consensus 267 iEnF~ISA~Gk~L--FvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpn--IDvLlCEQEvvad~t~Ai~tvl 342 (807)
T KOG0066|consen 267 IENFDISAQGKLL--FVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPN--IDVLLCEQEVVADSTSAIDTVL 342 (807)
T ss_pred eeeeeeeccccee--eeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCC--CceEeeeeeeeecCcHHHHHHH
Confidence 5566666544433 66777888899999999999999999999998642 332 2333333211 00000
Q ss_pred -----------------CCCcc------c----------cccc---------------------chhccCCCcchhHHHH
Q 019702 167 -----------------GDIPH------S----------AIGT---------------------ARRMQVPEPSLQHKVM 192 (337)
Q Consensus 167 -----------------~~~~~------~----------~~~~---------------------~~~~~~~S~g~k~r~~ 192 (337)
..+.. . .++. .+.....|||.+.|+.
T Consensus 343 ~aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELraiGA~sAEarARRILAGLGFskEMQ~rPt~kFSGGWRMRvS 422 (807)
T KOG0066|consen 343 KADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIGADSAEARARRILAGLGFSKEMQERPTTKFSGGWRMRVS 422 (807)
T ss_pred HhhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhccccchhHHHHHHhhcCCChhHhcCCccccCCceeeehh
Confidence 00000 0 0000 0223346999999999
Q ss_pred HHHHHhhCCcEEEEcCCCCHHHHHHHH---HHHhc-CCeEEEEEcCcchhHHhhchHHHHHhcCceE
Q 019702 193 IEAVENHMPEVIIVDEIGTEAEAHACR---SIAER-GVMLIGTAHGEWLENIIKNPILSDLIGGVDT 255 (337)
Q Consensus 193 ia~al~~~P~vlilDEp~~~ld~~~l~---~~~~~-G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~i 255 (337)
+||||.+.|-+|+|||||+.+|..++. .+.+. ..|+++++||..+.+.+|..++ -++..++
T Consensus 423 LARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWkKTLLIVSHDQgFLD~VCtdII--HLD~qkL 487 (807)
T KOG0066|consen 423 LARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQGFLDSVCTDII--HLDNQKL 487 (807)
T ss_pred HHHHHhcCceeeeecCCccccccceeeehhhHHhhhhheeEEEecccchHHHHHHHHh--hhhhhhh
Confidence 999999999999999999999976643 33322 4799999999999999999999 4555554
No 426
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.57 E-value=4.3e-15 Score=134.50 Aligned_cols=142 Identities=13% Similarity=0.123 Sum_probs=94.3
Q ss_pred hhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccc-cCCCeEEEEcCC-cccccCCC-CcccccccchhccCCCcchh
Q 019702 112 IDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSD-EFQKRVVIVDTS-NEIGGDGD-IPHSAIGTARRMQVPEPSLQ 188 (337)
Q Consensus 112 ~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~-~~~~~i~~v~~~-~ei~~~~~-~~~~~~~~~~~~~~~S~g~k 188 (337)
++++++...++++++|+|||||||||+++.++-..-- ..+ .+++.. ..+..... +...... -....-+|.+++
T Consensus 20 ~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~la~~g---~~vpa~~~~~~~~~~il~~~~l~-d~~~~~lS~~~~ 95 (222)
T cd03285 20 PNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVIVLMAQIG---CFVPCDSADIPIVDCILARVGAS-DSQLKGVSTFMA 95 (222)
T ss_pred EeeEEEeecCCeEEEEECCCCCChHHHHHHHHHHHHHHHhC---CCcCcccEEEeccceeEeeeccc-cchhcCcChHHH
Confidence 6777788888999999999999999999997632110 000 011111 01100000 0000000 011345789999
Q ss_pred HHHHHHHHH--hhCCcEEEEcCC---CCHHHHHH-----HHHHHh-cCCeEEEEEcCcchhHHhhchHHHHHhcCceEEE
Q 019702 189 HKVMIEAVE--NHMPEVIIVDEI---GTEAEAHA-----CRSIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVT 257 (337)
Q Consensus 189 ~r~~ia~al--~~~P~vlilDEp---~~~ld~~~-----l~~~~~-~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~ 257 (337)
++..+++++ +.+|+++|+||| |+++|... +..+.+ .|.++|++||. ..+..+|+++. .+.+|++..
T Consensus 96 e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD~~~~~~~il~~l~~~~~~~vlisTH~-~el~~~~~~~~--~i~~g~~~~ 172 (222)
T cd03285 96 EMLETAAILKSATENSLIIIDELGRGTSTYDGFGLAWAIAEYIATQIKCFCLFATHF-HELTALADEVP--NVKNLHVTA 172 (222)
T ss_pred HHHHHHHHHHhCCCCeEEEEecCcCCCChHHHHHHHHHHHHHHHhcCCCeEEEEech-HHHHHHhhcCC--CeEEEEEEE
Confidence 999999999 789999999999 88899532 244444 48899999996 55667899988 788898876
Q ss_pred ecC
Q 019702 258 LGD 260 (337)
Q Consensus 258 ~g~ 260 (337)
.++
T Consensus 173 ~~~ 175 (222)
T cd03285 173 LTD 175 (222)
T ss_pred EEe
Confidence 654
No 427
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.54 E-value=1.3e-14 Score=130.50 Aligned_cols=73 Identities=10% Similarity=-0.075 Sum_probs=54.5
Q ss_pred ccCCCcchhHHHHHHHHH----hhCCcEEEEcCCCCHHHH-------HHHHHHHhc-C-CeEEEEEcCcchhHHhhch--
Q 019702 180 MQVPEPSLQHKVMIEAVE----NHMPEVIIVDEIGTEAEA-------HACRSIAER-G-VMLIGTAHGEWLENIIKNP-- 244 (337)
Q Consensus 180 ~~~~S~g~k~r~~ia~al----~~~P~vlilDEp~~~ld~-------~~l~~~~~~-G-~tvi~t~H~~~~~~~~~d~-- 244 (337)
...+|+||+|++.+++++ +.+|+++++|||++++|. +.+..+.+. | .++|++||++......+++
T Consensus 124 ~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~~~~~~~~~~~ 203 (213)
T cd03277 124 PHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLLPGLNYHEKMT 203 (213)
T ss_pred hhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhccCCcccCceE
Confidence 346799999998777554 479999999999999994 345555555 5 4799999998767667764
Q ss_pred HHHHHhcCce
Q 019702 245 ILSDLIGGVD 254 (337)
Q Consensus 245 v~~~ll~~G~ 254 (337)
++ ++++|+
T Consensus 204 v~--~l~~g~ 211 (213)
T cd03277 204 VL--CVYNGP 211 (213)
T ss_pred EE--EEecCc
Confidence 44 566664
No 428
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.51 E-value=4.2e-14 Score=125.94 Aligned_cols=117 Identities=15% Similarity=0.118 Sum_probs=66.7
Q ss_pred ccCCCEEEEEcCCCCcHHHHHHHHHccccc-cCCCeEE---EEcCCcccccCCCCcccccccchhccCCCc--chhHHHH
Q 019702 119 LHYGKSILFVGRPGVGKTTVMREIARVLSD-EFQKRVV---IVDTSNEIGGDGDIPHSAIGTARRMQVPEP--SLQHKVM 192 (337)
Q Consensus 119 v~~g~~v~IiGpnGsGKTTLL~~l~gll~~-~~~~~i~---~v~~~~ei~~~~~~~~~~~~~~~~~~~~S~--g~k~r~~ 192 (337)
+..|++++|+||||||||||+|.|++...- ..+..+- ++.+...+.......++. . .. .|. .+..++.
T Consensus 22 l~~g~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~a~~~~~q~~~l~~~~~~~d~l-~----~~-~s~~~~e~~~~~ 95 (199)
T cd03283 22 MEKKNGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCASSFELPPVKIFTSIRVSDDL-R----DG-ISYFYAELRRLK 95 (199)
T ss_pred EcCCcEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEecCccCcccceEEEeccchhcc-c----cc-cChHHHHHHHHH
Confidence 445799999999999999999999987631 1122110 000100000000000000 0 00 111 1223332
Q ss_pred HHHHHhh--CCcEEEEcCCCCHHHHH--------HHHHHHhcCCeEEEEEcCcchhHHh
Q 019702 193 IEAVENH--MPEVIIVDEIGTEAEAH--------ACRSIAERGVMLIGTAHGEWLENII 241 (337)
Q Consensus 193 ia~al~~--~P~vlilDEp~~~ld~~--------~l~~~~~~G~tvi~t~H~~~~~~~~ 241 (337)
-+..... +|+++++|||++++|.. .+..+.+.|.++|++||+.+++...
T Consensus 96 ~iL~~~~~~~p~llllDEp~~glD~~~~~~l~~~ll~~l~~~~~tiiivTH~~~~~~~~ 154 (199)
T cd03283 96 EIVEKAKKGEPVLFLLDEIFKGTNSRERQAASAAVLKFLKNKNTIGIISTHDLELADLL 154 (199)
T ss_pred HHHHhccCCCCeEEEEecccCCCCHHHHHHHHHHHHHHHHHCCCEEEEEcCcHHHHHhh
Confidence 2233333 89999999999988832 2444556789999999999877544
No 429
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=99.51 E-value=5.9e-13 Score=125.16 Aligned_cols=215 Identities=15% Similarity=0.176 Sum_probs=145.4
Q ss_pred HhcccCCCCeeEEEEecCCccEEEEeCccCceeccCCCCCHHHHHHHHHHHhc----cCCCcceEecCce---eEEEEEe
Q 019702 19 LQNDSKRGQLLEVILDLGRLPEARYLGEFGGKYLRSTEVSVEELEYAQSAVGE----FGGDNRAGIEGTL---HRISAIR 91 (337)
Q Consensus 19 l~~~~~~~~~~ei~l~~g~~~~~~~~g~~~~~~~~~~~~t~~~l~~~~~~~~~----~~~~~~~~~~g~~---~rv~~~~ 91 (337)
|+++..++.++||.+.....+++...+.. ...+-...++.++..+++++.. -..+..+.+++.+ .|+|+.-
T Consensus 50 Le~ll~dd~i~dImVn~~~~v~v~~~~~~--~~t~irf~d~~~l~~ii~ria~~vgrriD~~~P~~darLpdGsRvna~~ 127 (355)
T COG4962 50 LEPLLADDDIEDIMVNGPGRVFVERKGGL--EPTDIRFLDEAALLRIIQRIAAAVGRRIDESQPIVDARLPDGSRLNANS 127 (355)
T ss_pred chhhhcCCCceeEEecCCCcEEEEecCcc--ccCCcccCCHHHHHHHHHHHHHHhCCccccCCceeeeeCCCCceEEeec
Confidence 34455578899999998888877543332 1222246688899998887732 2234455555442 6888876
Q ss_pred ---eCCCcEeeEEEEECCccc--------------cchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeE
Q 019702 92 ---SRKGAIVGLTCRVGRAVS--------------GHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRV 154 (337)
Q Consensus 92 ---~~~g~i~~l~~r~~~~~~--------------~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i 154 (337)
...|+ .+++|..++.+ ...+.++..+.....++|.|-+||||||||++|+++++++ .++
T Consensus 128 pPva~dGp--~lsIRKf~k~~ltl~dli~~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTTlLNal~~~i~~~--eRv 203 (355)
T COG4962 128 PPVAIDGP--TLSIRKFPKIKLTLLDLIIFGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTTLLNALSGFIDSD--ERV 203 (355)
T ss_pred CccccCCC--cccccccccccccHHHHHHcCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHHHHHHHHhcCCCc--ccE
Confidence 33467 78888766554 1122233335556689999999999999999999999885 589
Q ss_pred EEEcCCcccccCCCCcccccc-cchhcc-C-CCcchhHHHHHHHHHhhCCcEEEEcCCCCHHHHHHHHHHHhcCCe-EEE
Q 019702 155 VIVDTSNEIGGDGDIPHSAIG-TARRMQ-V-PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRSIAERGVM-LIG 230 (337)
Q Consensus 155 ~~v~~~~ei~~~~~~~~~~~~-~~~~~~-~-~S~g~k~r~~ia~al~~~P~vlilDEp~~~ld~~~l~~~~~~G~t-vi~ 230 (337)
+++++..|+.. ++..+- ...+.. + ..|.-..+-...-+|+++||-|++.|....+-.+++ ++..+||- -+.
T Consensus 204 ItiEDtaELql----~~ph~vrL~TR~~n~Eg~gevtm~dLvkn~LRmRPDRIiVGEVRG~Ea~dLL-~AmnTGHdG~~~ 278 (355)
T COG4962 204 ITIEDTAELQL----AHPHVVRLETRPPNVEGTGEVTMRDLVKNALRMRPDRIIVGEVRGVEALDLL-QAMNTGHDGGMG 278 (355)
T ss_pred EEEeehhhhcc----CCCceEEEeecCCCCCCcceEEHHHHHHHHhhcCccceEEEEecCccHHHHH-HHhccCCCCcce
Confidence 99999888743 222211 111111 1 123335666789999999999999999998555555 45678884 589
Q ss_pred EEcCcchhHHhhch
Q 019702 231 TAHGEWLENIIKNP 244 (337)
Q Consensus 231 t~H~~~~~~~~~d~ 244 (337)
|.|+.+..+...+-
T Consensus 279 TlHans~~ea~~rl 292 (355)
T COG4962 279 TLHANSPREALTRL 292 (355)
T ss_pred eeccCCHHHHHHHH
Confidence 99999977665543
No 430
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.50 E-value=1.5e-13 Score=152.68 Aligned_cols=84 Identities=18% Similarity=0.187 Sum_probs=71.1
Q ss_pred cCCCcchhHHHHHHHHHhhC---CcEEEEcCCCCHHHH-------HHHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHh
Q 019702 181 QVPEPSLQHKVMIEAVENHM---PEVIIVDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLI 250 (337)
Q Consensus 181 ~~~S~g~k~r~~ia~al~~~---P~vlilDEp~~~ld~-------~~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll 250 (337)
..+|||+.||+-||..|... +.+++|||||.+|+. ..+..+.+.|+|||++.|+++.+.. ||.++ =|
T Consensus 1698 ~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d~~~Ll~~l~~L~~~g~tvivieH~~~~i~~-aD~ii--dl 1774 (1809)
T PRK00635 1698 SSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALLVQLRTLVSLGHSVIYIDHDPALLKQ-ADYLI--EM 1774 (1809)
T ss_pred CccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHh-CCEEE--Ec
Confidence 34599999999999999865 799999999999874 4466678899999999999997754 99988 44
Q ss_pred c------CceEEEecCHHHHHHh
Q 019702 251 G------GVDTVTLGDEEARARR 267 (337)
Q Consensus 251 ~------~G~iv~~g~~~~~~~~ 267 (337)
+ +|++|+.|+|+++...
T Consensus 1775 gp~gG~~GG~iva~Gtp~~i~~~ 1797 (1809)
T PRK00635 1775 GPGSGKTGGKILFSGPPKDISAS 1797 (1809)
T ss_pred CCCcccCCCEEEEEeCHHHHhhC
Confidence 3 4799999999999864
No 431
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=99.49 E-value=6.8e-14 Score=126.17 Aligned_cols=143 Identities=14% Similarity=0.079 Sum_probs=86.4
Q ss_pred hhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEc-CCcccccCCCCcccccccchhccCCCcchhHH
Q 019702 112 IDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD-TSNEIGGDGDIPHSAIGTARRMQVPEPSLQHK 190 (337)
Q Consensus 112 ~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~-~~~ei~~~~~~~~~~~~~~~~~~~~S~g~k~r 190 (337)
++++++...+ ++++|+|||||||||+|+.+++..-....+ .+++ ....+... . ..+......+.++.|+...
T Consensus 21 ~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l~~~g--~~vp~~~~~i~~~---~-~i~~~~~~~~~ls~g~s~f 93 (216)
T cd03284 21 PNDTELDPER-QILLITGPNMAGKSTYLRQVALIALLAQIG--SFVPASKAEIGVV---D-RIFTRIGASDDLAGGRSTF 93 (216)
T ss_pred eeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHHhccC--Ceeccccceecce---e-eEeccCCchhhhccCcchH
Confidence 5566666555 899999999999999999998644221000 1111 11111110 0 0001111133345555543
Q ss_pred ----HHHHHHHh--hCCcEEEEcCC---CCHHHHH-----HHHHHHhc-CCeEEEEEcCcchhHHhhchHHHHHhcCceE
Q 019702 191 ----VMIEAVEN--HMPEVIIVDEI---GTEAEAH-----ACRSIAER-GVMLIGTAHGEWLENIIKNPILSDLIGGVDT 255 (337)
Q Consensus 191 ----~~ia~al~--~~P~vlilDEp---~~~ld~~-----~l~~~~~~-G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~i 255 (337)
..++.++. .+|+++++||| |+.+|.. .+..+.+. +.++|++||+.++ ..+++++. -+..+++
T Consensus 94 ~~e~~~l~~~l~~~~~~~llllDEp~~gt~~lD~~~~~~~il~~l~~~~~~~vi~~TH~~~l-~~l~~~~~--~v~~~~~ 170 (216)
T cd03284 94 MVEMVETANILNNATERSLVLLDEIGRGTSTYDGLSIAWAIVEYLHEKIGAKTLFATHYHEL-TELEGKLP--RVKNFHV 170 (216)
T ss_pred HHHHHHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhccCCcEEEEeCcHHH-HHHhhcCC--CeEEEEE
Confidence 24555554 69999999999 8888843 23445566 8899999999764 45777665 4566777
Q ss_pred EEecCHHHH
Q 019702 256 VTLGDEEAR 264 (337)
Q Consensus 256 v~~g~~~~~ 264 (337)
...++++++
T Consensus 171 ~~~~~~~~l 179 (216)
T cd03284 171 AVKEKGGGV 179 (216)
T ss_pred EEEeeCCeE
Confidence 666655543
No 432
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.49 E-value=3.7e-14 Score=126.74 Aligned_cols=128 Identities=12% Similarity=0.113 Sum_probs=81.6
Q ss_pred hhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEcC-CcccccCC----CCcccccccchhccCCCcc
Q 019702 112 IDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDT-SNEIGGDG----DIPHSAIGTARRMQVPEPS 186 (337)
Q Consensus 112 ~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~~-~~ei~~~~----~~~~~~~~~~~~~~~~S~g 186 (337)
++++++....|++++|+|||||||||+++.++++.--..-+ .+++. ..++.... .+.... ...+....+|.+
T Consensus 19 ~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~la~~G--~~vpa~~~~l~~~d~I~~~~~~~d-~~~~~~S~fs~e 95 (204)
T cd03282 19 PNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLAIMAQIG--CFVPAEYATLPIFNRLLSRLSNDD-SMERNLSTFASE 95 (204)
T ss_pred EeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHHHHHHcC--CCcchhhcCccChhheeEecCCcc-ccchhhhHHHHH
Confidence 77888888899999999999999999999998664221000 01110 11110000 000000 001123345667
Q ss_pred hhHHHHHHHHHhhCCcEEEEcCCCCHHHH--------HHHHHHHhcCCeEEEEEcCcchhHHhhc
Q 019702 187 LQHKVMIEAVENHMPEVIIVDEIGTEAEA--------HACRSIAERGVMLIGTAHGEWLENIIKN 243 (337)
Q Consensus 187 ~k~r~~ia~al~~~P~vlilDEp~~~ld~--------~~l~~~~~~G~tvi~t~H~~~~~~~~~d 243 (337)
+++. ..+.+++.+|+++++|||+++.|. ..+..+.+.|.++|++||+.++++..++
T Consensus 96 ~~~~-~~il~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~~~~~~i~~TH~~~l~~~~~~ 159 (204)
T cd03282 96 MSET-AYILDYADGDSLVLIDELGRGTSSADGFAISLAILECLIKKESTVFFATHFRDIAAILGN 159 (204)
T ss_pred HHHH-HHHHHhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHHHHHhhc
Confidence 7754 555667889999999999776652 3355666779999999999998876553
No 433
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.48 E-value=1.8e-13 Score=133.27 Aligned_cols=163 Identities=13% Similarity=0.115 Sum_probs=122.1
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEcCCc----cc-----ccCC
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSN----EI-----GGDG 167 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~~~~----ei-----~~~~ 167 (337)
+++++..-.+. ...+++++|.+..||+++|.|-.|.|-+.|+.+|+|+.++.. ++|.+-.... .. .+..
T Consensus 260 V~~L~v~~~~~-~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~-G~I~l~G~~v~~~~~~~~~r~~G~~ 337 (501)
T COG3845 260 VEDLSVKDRRG-VTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPAS-GRILLNGKDVLGRLSPRERRRLGLA 337 (501)
T ss_pred EeeeEeecCCC-CceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCC-ceEEECCEeccccCCHHHHHhcCCc
Confidence 44555443322 234889999999999999999999999999999999997764 5554432211 00 0011
Q ss_pred CCcccccc---------------------------c------------------------chhccCCCcchhHHHHHHHH
Q 019702 168 DIPHSAIG---------------------------T------------------------ARRMQVPEPSLQHKVMIEAV 196 (337)
Q Consensus 168 ~~~~~~~~---------------------------~------------------------~~~~~~~S~g~k~r~~ia~a 196 (337)
.+|+...+ . ......+|||.+||+.+||-
T Consensus 338 ~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~LSGGNqQK~IlaRE 417 (501)
T COG3845 338 YVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGNQQKLILARE 417 (501)
T ss_pred cCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcchhhcCCcceehhhhhhh
Confidence 11211100 0 01233469999999999999
Q ss_pred HhhCCcEEEEcCCCCHHHHH-------HHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHH
Q 019702 197 ENHMPEVIIVDEIGTEAEAH-------ACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEA 263 (337)
Q Consensus 197 l~~~P~vlilDEp~~~ld~~-------~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~ 263 (337)
+..+|++||+.+||.++|.. .+.++++.|..|+.+|-+++++..+||++. +|++|+++...++++
T Consensus 418 l~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDEil~lsDrIa--Vi~~Gri~~~~~~~~ 489 (501)
T COG3845 418 LARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIA--VIYEGRIVGIVPPEE 489 (501)
T ss_pred hccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHHHHHhhheee--eeeCCceeccccccc
Confidence 99999999999999999963 355667889999999999999999999999 999999998887775
No 434
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.46 E-value=4.9e-13 Score=136.44 Aligned_cols=83 Identities=18% Similarity=0.174 Sum_probs=70.1
Q ss_pred CCCcchhHHHHHHHHHhhCC---cEEEEcCCCCHHHH-------HHHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHh-
Q 019702 182 VPEPSLQHKVMIEAVENHMP---EVIIVDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLI- 250 (337)
Q Consensus 182 ~~S~g~k~r~~ia~al~~~P---~vlilDEp~~~ld~-------~~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll- 250 (337)
.+|||+-||+-+|.-|..+. -+.||||||.+|.+ +.+..+...|.|||++.|+++.+ ..||.++ =+
T Consensus 822 TLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd~GnTViVIEHNLdVI-k~AD~II--DLG 898 (935)
T COG0178 822 TLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEHNLDVI-KTADWII--DLG 898 (935)
T ss_pred cccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecccceE-eecCEEE--EcC
Confidence 35999999999999998876 89999999998763 44667788999999999999965 5788887 33
Q ss_pred -----cCceEEEecCHHHHHHh
Q 019702 251 -----GGVDTVTLGDEEARARR 267 (337)
Q Consensus 251 -----~~G~iv~~g~~~~~~~~ 267 (337)
++|++|+.|+|+++.+.
T Consensus 899 PeGG~~GG~iva~GTPeeva~~ 920 (935)
T COG0178 899 PEGGDGGGEIVASGTPEEVAKV 920 (935)
T ss_pred CCCCCCCceEEEecCHHHHHhC
Confidence 35899999999999863
No 435
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.42 E-value=8.3e-13 Score=118.85 Aligned_cols=110 Identities=15% Similarity=0.129 Sum_probs=69.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHHc--ccc------ccCCCeEEEEcCCcccccCCCCcccccccchhccCCC--cchhHHHH
Q 019702 123 KSILFVGRPGVGKTTVMREIAR--VLS------DEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPE--PSLQHKVM 192 (337)
Q Consensus 123 ~~v~IiGpnGsGKTTLL~~l~g--ll~------~~~~~~i~~v~~~~ei~~~~~~~~~~~~~~~~~~~~S--~g~k~r~~ 192 (337)
..++|+||||+||||||+.++. ++. |.....+.+.++-..-.. ....+ .+..| ..+-++++
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~~~~la~~G~~v~a~~~~~~~~d~i~~~l~----~~~si-----~~~~S~f~~el~~l~ 100 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVALIVFLAHIGSFVPADSATIGLVDKIFTRMS----SRESV-----SSGQSAFMIDLYQVS 100 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHHHHHHHhCCCeeEcCCcEEeeeeeeeeeeC----CccCh-----hhccchHHHHHHHHH
Confidence 7899999999999999999983 332 111122222222100000 00000 11112 13457888
Q ss_pred HHHHHhhCCcEEEEcCCCCHHHH--------HHHHHHHhc---CCeEEEEEcCcchhHHh
Q 019702 193 IEAVENHMPEVIIVDEIGTEAEA--------HACRSIAER---GVMLIGTAHGEWLENII 241 (337)
Q Consensus 193 ia~al~~~P~vlilDEp~~~ld~--------~~l~~~~~~---G~tvi~t~H~~~~~~~~ 241 (337)
++++++.+|.++++|||++++|. ..++.+.+. +.++|++||+.+.+...
T Consensus 101 ~~l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~ 160 (213)
T cd03281 101 KALRLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNRS 160 (213)
T ss_pred HHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhh
Confidence 89999999999999999998873 234555554 24899999999877654
No 436
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.42 E-value=2.1e-13 Score=130.16 Aligned_cols=136 Identities=19% Similarity=0.315 Sum_probs=95.8
Q ss_pred cchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHcccc--------ccCCCeEEEEcCC----------cccccC-----
Q 019702 110 GHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLS--------DEFQKRVVIVDTS----------NEIGGD----- 166 (337)
Q Consensus 110 ~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~--------~~~~~~i~~v~~~----------~ei~~~----- 166 (337)
..++++++.+++|+.++|+|++||||||+||+|+|... |+ .+.+-+.... +++...
T Consensus 397 yvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~-sg~v~vp~nt~~a~iPge~Ep~f~~~tileh 475 (593)
T COG2401 397 YVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPD-SGKVEVPKNTVSALIPGEYEPEFGEVTILEH 475 (593)
T ss_pred eeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCC-CCceeccccchhhccCcccccccCchhHHHH
Confidence 35889999999999999999999999999999999864 22 1222211110 111100
Q ss_pred -CCCccc---ccc------------cchhccCCCcchhHHHHHHHHHhhCCcEEEEcCCCCHHHH-------HHHHHHH-
Q 019702 167 -GDIPHS---AIG------------TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEA-------HACRSIA- 222 (337)
Q Consensus 167 -~~~~~~---~~~------------~~~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~~ld~-------~~l~~~~- 222 (337)
...+.. ... .-+.+..+|.|||.|.-||.+++..|.++++||-.+.+|. .-+.+++
T Consensus 476 l~s~tGD~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkiselaR 555 (593)
T COG2401 476 LRSKTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAR 555 (593)
T ss_pred HhhccCchhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHHHH
Confidence 000000 000 0134456799999999999999999999999999999993 2344444
Q ss_pred hcCCeEEEEEcCcchhHHh-hchHH
Q 019702 223 ERGVMLIGTAHGEWLENII-KNPIL 246 (337)
Q Consensus 223 ~~G~tvi~t~H~~~~~~~~-~d~v~ 246 (337)
+.|.|++++||..++.+++ -|.++
T Consensus 556 e~giTlivvThrpEv~~AL~PD~li 580 (593)
T COG2401 556 EAGITLIVVTHRPEVGNALRPDTLI 580 (593)
T ss_pred HhCCeEEEEecCHHHHhccCCceeE
Confidence 5699999999999998887 45555
No 437
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=99.37 E-value=1.5e-12 Score=114.54 Aligned_cols=110 Identities=15% Similarity=0.252 Sum_probs=63.9
Q ss_pred EEEEcCCCCcHHHHHHHHH-ccccccCC-------CeEEEEcCCcccccCCCCcccccccchhccCCCcchhHHHHHHHH
Q 019702 125 ILFVGRPGVGKTTVMREIA-RVLSDEFQ-------KRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAV 196 (337)
Q Consensus 125 v~IiGpnGsGKTTLL~~l~-gll~~~~~-------~~i~~v~~~~ei~~~~~~~~~~~~~~~~~~~~S~g~k~r~~ia~a 196 (337)
++|+||||+||||+||.++ ..+-.+.+ ..+.++++ +........ .. ......+|.++++ ++++
T Consensus 2 ~~ltG~N~~GKst~l~~i~~~~~la~~G~~v~a~~~~~~~~d~---il~~~~~~d-~~--~~~~s~fs~~~~~---l~~~ 72 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVGLIVIMAQIGSFVPAESAELPVFDR---IFTRIGASD-SL--AQGLSTFMVEMKE---TANI 72 (185)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHHHhCCCeeehheEecccce---EEEEeCCCC-ch--hccccHHHHHHHH---HHHH
Confidence 6899999999999999998 22222211 11211111 000000000 00 0112234445443 5556
Q ss_pred Hhh--CCcEEEEcCCCCHHHHH--------HHHHHHhc-CCeEEEEEcCcchhHHhhch
Q 019702 197 ENH--MPEVIIVDEIGTEAEAH--------ACRSIAER-GVMLIGTAHGEWLENIIKNP 244 (337)
Q Consensus 197 l~~--~P~vlilDEp~~~ld~~--------~l~~~~~~-G~tvi~t~H~~~~~~~~~d~ 244 (337)
+.. +|+++++|||++++|.. .+..+.++ |.++|++||+.+. ..+++.
T Consensus 73 l~~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~l-~~~~~~ 130 (185)
T smart00534 73 LKNATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHEL-TKLADE 130 (185)
T ss_pred HHhCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHHH-HHHhhc
Confidence 655 99999999999988842 23344554 8899999999964 445553
No 438
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.36 E-value=1.6e-12 Score=121.43 Aligned_cols=66 Identities=14% Similarity=0.174 Sum_probs=53.0
Q ss_pred CCcchhHHHHHHHHHhh----CCcEEEEcCCCCHHHHHH-------HHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhc
Q 019702 183 PEPSLQHKVMIEAVENH----MPEVIIVDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPILSDLIG 251 (337)
Q Consensus 183 ~S~g~k~r~~ia~al~~----~P~vlilDEp~~~ld~~~-------l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~ 251 (337)
+|+|++||+++|++++. +|+++++|||++++|... +..+ ..+.++|++||+.... .+||+++ ++.
T Consensus 171 lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~-~~~~tii~isH~~~~~-~~~d~~~--~l~ 246 (276)
T cd03241 171 ASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKEL-SRSHQVLCITHLPQVA-AMADNHF--LVE 246 (276)
T ss_pred cChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHH-hCCCEEEEEechHHHH-HhcCcEE--EEE
Confidence 69999999999987654 999999999999999543 3333 2478999999999854 6888888 555
Q ss_pred C
Q 019702 252 G 252 (337)
Q Consensus 252 ~ 252 (337)
.
T Consensus 247 ~ 247 (276)
T cd03241 247 K 247 (276)
T ss_pred E
Confidence 4
No 439
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=99.31 E-value=6.8e-12 Score=120.80 Aligned_cols=203 Identities=21% Similarity=0.255 Sum_probs=132.5
Q ss_pred CCeeEEEEecCCccEEEE--eCccCceeccCCCCCHHHHHHHHHHHh-cc--CCCcceEecCc--------eeEEEEEee
Q 019702 26 GQLLEVILDLGRLPEARY--LGEFGGKYLRSTEVSVEELEYAQSAVG-EF--GGDNRAGIEGT--------LHRISAIRS 92 (337)
Q Consensus 26 ~~~~ei~l~~g~~~~~~~--~g~~~~~~~~~~~~t~~~l~~~~~~~~-~~--~~~~~~~~~g~--------~~rv~~~~~ 92 (337)
+....+||+.|.||+++. .|++....+++.|+|++|++.+.+.+- +- ..+..+.++.. ..|+.+.+.
T Consensus 148 ~~TMSvHLKeg~~P~aK~GkpG~~k~v~l~d~pl~~~ele~ia~eIi~~a~~~~~sfIEi~r~GatVvQlrn~RIvIarP 227 (604)
T COG1855 148 EETMSVHLKEGVPPMAKKGKPGEWKLVRLSDKPLTREELEEIAREIIERAKRDPDSFIEIDRPGATVVQLRNYRIVIARP 227 (604)
T ss_pred CcceEEeeccCCCcccccCCCCcEEEEEcCCccCCHHHHHHHHHHHHHHHhhCcCceEEEccCCceEEEeccEEEEEecC
Confidence 568899999999999963 344433467789999999999887652 11 11444555421 146665553
Q ss_pred CCCcEeeEEEEECCccc-------cchhhhhhcc-cCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEcCCcccc
Q 019702 93 RKGAIVGLTCRVGRAVS-------GHIDMVYDLL-HYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIG 164 (337)
Q Consensus 93 ~~g~i~~l~~r~~~~~~-------~~~~~l~~~v-~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~~~~ei~ 164 (337)
.-.. .+.+.--+... +.-+.+.-.+ +..+.++|.||||+||||+.++++.++... ++-+-+++.+..+.
T Consensus 228 PfSd--~~EITavRPvvk~~ledY~L~dkl~eRL~eraeGILIAG~PGaGKsTFaqAlAefy~~~-GkiVKTmEsPRDl~ 304 (604)
T COG1855 228 PFSD--RWEITAVRPVVKLSLEDYGLSDKLKERLEERAEGILIAGAPGAGKSTFAQALAEFYASQ-GKIVKTMESPRDLQ 304 (604)
T ss_pred CCCC--ceEEEEEeeeEEechhhcCCCHHHHHHHHhhhcceEEecCCCCChhHHHHHHHHHHHhc-CcEEeeccCccccc
Confidence 2211 23222221111 2223333333 457889999999999999999999999875 66666777665553
Q ss_pred cCCCCcccccccchhccCCCcchhHHHHHH-HHHhhCCcEEEEcCCCCHHHHHHHHHHHhcCCeEEEEEcCcchhHHhh
Q 019702 165 GDGDIPHSAIGTARRMQVPEPSLQHKVMIE-AVENHMPEVIIVDEIGTEAEAHACRSIAERGVMLIGTAHGEWLENIIK 242 (337)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~S~g~k~r~~ia-~al~~~P~vlilDEp~~~ld~~~l~~~~~~G~tvi~t~H~~~~~~~~~ 242 (337)
. +.. ..++.-+.+.|.. .+ ..|+.+||+-|.||.+.-.|++.+..++-.|+..+.+.|+...++++.
T Consensus 305 v----~~e----ITQYs~l~g~me~---t~DiLLLvRPDYTIyDEmR~t~DF~vyaDmRLAGVGMVGVVHATrpIDAiQ 372 (604)
T COG1855 305 V----SPE----ITQYSPLEGDMEK---TADILLLVRPDYTIYDEMRKTEDFQVYADLRLAGVGMVGVVHATRPIDAIQ 372 (604)
T ss_pred C----Chh----hhhcccccCchhh---hccEEEEecCCceehhhhhcccceEEeeeeecccCceEeEEecCChhHHHH
Confidence 2 111 1223333333321 22 234679999999999999999998888888999999999988777654
No 440
>PRK13695 putative NTPase; Provisional
Probab=99.28 E-value=2.7e-11 Score=105.36 Aligned_cols=129 Identities=24% Similarity=0.254 Sum_probs=84.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHccccccCCCeE-EEEcCC-----cccccC--------------CCC-cccccccchhccC
Q 019702 124 SILFVGRPGVGKTTVMREIARVLSDEFQKRV-VIVDTS-----NEIGGD--------------GDI-PHSAIGTARRMQV 182 (337)
Q Consensus 124 ~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i-~~v~~~-----~ei~~~--------------~~~-~~~~~~~~~~~~~ 182 (337)
.++|+|+||||||||++.+++.+.+. +..+ .++.+. ...++. ... ..... ......
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~~~-G~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~ 78 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLKEE-GYKVGGFYTEEVREGGKRIGFKIIDLDTGEEGILARVGFPSRPRV--GKYVVN 78 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEEcHHHHhcCCccceEEEEcCCCCeEEccccCCCCCCce--eeEEEe
Confidence 47899999999999999998877542 2232 232211 001000 000 00000 011223
Q ss_pred CCcchhHHHHHHHHHhhCCcEEEEcCCCC--HHH---HHHHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEE
Q 019702 183 PEPSLQHKVMIEAVENHMPEVIIVDEIGT--EAE---AHACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVT 257 (337)
Q Consensus 183 ~S~g~k~r~~ia~al~~~P~vlilDEp~~--~ld---~~~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~ 257 (337)
+|++++....+......+|++|++|||+. .++ .+.+..+.+.|.++|+|+|+. ....+++++. .+.+|+++.
T Consensus 79 lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~~~~~~l~~~~~~~~~~i~v~h~~-~~~~~~~~i~--~~~~~~i~~ 155 (174)
T PRK13695 79 LEDLERIGIPALERALEEADVIIIDEIGKMELKSPKFVKAVEEVLDSEKPVIATLHRR-SVHPFVQEIK--SRPGGRVYE 155 (174)
T ss_pred hHHHHHHHHHHHHhccCCCCEEEEECCCcchhhhHHHHHHHHHHHhCCCeEEEEECch-hhHHHHHHHh--ccCCcEEEE
Confidence 56777777777777777999999999644 333 466777778899999999985 4557899998 888998876
Q ss_pred e
Q 019702 258 L 258 (337)
Q Consensus 258 ~ 258 (337)
.
T Consensus 156 ~ 156 (174)
T PRK13695 156 L 156 (174)
T ss_pred E
Confidence 5
No 441
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.27 E-value=4.6e-12 Score=135.34 Aligned_cols=156 Identities=17% Similarity=0.198 Sum_probs=109.4
Q ss_pred cchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccC------------------CCeEEEEcCCc-cc-------
Q 019702 110 GHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEF------------------QKRVVIVDTSN-EI------- 163 (337)
Q Consensus 110 ~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~------------------~~~i~~v~~~~-ei------- 163 (337)
..+++++..+++|+.++++|||||||||||++++|-+.... .+.+.|+.+.. .+
T Consensus 129 ~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTVre 208 (1391)
T KOG0065|consen 129 QILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVRE 208 (1391)
T ss_pred eeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEEee
Confidence 45899999999999999999999999999999999875331 12222222210 00
Q ss_pred ----ccCCCCcccccccc-----------------------------hhccCCCcchhHHHHHHHHHhhCCcEEEEcCCC
Q 019702 164 ----GGDGDIPHSAIGTA-----------------------------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIG 210 (337)
Q Consensus 164 ----~~~~~~~~~~~~~~-----------------------------~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~ 210 (337)
+.....+...+... ....-.|||+|+|+.++-+++..|.+++.||+|
T Consensus 209 TldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De~t 288 (1391)
T KOG0065|consen 209 TLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDEIT 288 (1391)
T ss_pred hhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeeccc
Confidence 00000010000000 001123999999999999999999999999999
Q ss_pred CHHHH-------HHHHHHH-hcCCeEEEEEcCcc-hhHHhhchHHHHHhcCceEEEecCHHHHHHh
Q 019702 211 TEAEA-------HACRSIA-ERGVMLIGTAHGEW-LENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (337)
Q Consensus 211 ~~ld~-------~~l~~~~-~~G~tvi~t~H~~~-~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~ 267 (337)
.++|. +.++.++ ..+.|++++.|... ..-.+-|.++ +|..|++|.+|+.++...-
T Consensus 289 ~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~--lL~eG~~iy~Gp~d~~~~y 352 (1391)
T KOG0065|consen 289 RGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVI--LLSEGYQIYQGPRDEVLPY 352 (1391)
T ss_pred ccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhhee--eeeccceEEeccHHHHHHH
Confidence 99993 3455554 34778777776654 5556788999 9999999999999987653
No 442
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.26 E-value=1.8e-11 Score=110.81 Aligned_cols=125 Identities=13% Similarity=0.135 Sum_probs=72.4
Q ss_pred hhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHc-cccccCCCeEEEEcCCcccccCCCCcccccccc-hhccCCCcchhH
Q 019702 112 IDMVYDLLHYGKSILFVGRPGVGKTTVMREIAR-VLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTA-RRMQVPEPSLQH 189 (337)
Q Consensus 112 ~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~g-ll~~~~~~~i~~v~~~~ei~~~~~~~~~~~~~~-~~~~~~S~g~k~ 189 (337)
+.++++.+.+|++++|+||||+||||+++.+++ .+.++.+. ... -....+.....+.. .++.. ....-.|.-+..
T Consensus 21 ~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~-~v~-a~~~~~~~~~~i~~-~~~~~d~~~~~~StF~~e 97 (222)
T cd03287 21 PNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGS-FVP-ASSATLSIFDSVLT-RMGASDSIQHGMSTFMVE 97 (222)
T ss_pred EEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCC-EEE-cCceEEeccceEEE-EecCccccccccchHHHH
Confidence 677888889999999999999999999999999 44444222 111 11112211100000 00000 000111222222
Q ss_pred HHHHHHH--HhhCCcEEEEcCCCCHH---HH-----HHHHHHHhc-CCeEEEEEcCcchhH
Q 019702 190 KVMIEAV--ENHMPEVIIVDEIGTEA---EA-----HACRSIAER-GVMLIGTAHGEWLEN 239 (337)
Q Consensus 190 r~~ia~a--l~~~P~vlilDEp~~~l---d~-----~~l~~~~~~-G~tvi~t~H~~~~~~ 239 (337)
-..++.+ .+.+|.++|+|||+++. |. ..+..+.+. +.++|++||+.++..
T Consensus 98 ~~~~~~il~~~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~~~~~~i~~TH~~~l~~ 158 (222)
T cd03287 98 LSETSHILSNCTSRSLVILDELGRGTSTHDGIAIAYATLHYLLEEKKCLVLFVTHYPSLGE 158 (222)
T ss_pred HHHHHHHHHhCCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhccCCeEEEEcccHHHHH
Confidence 2223333 34589999999995543 32 234556666 889999999998765
No 443
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.24 E-value=8e-12 Score=133.02 Aligned_cols=85 Identities=13% Similarity=0.110 Sum_probs=75.1
Q ss_pred hccCCCcchhHHHHHHHHHhhCC--cEEEEcCCCCHHHH-------HHHHHHHhcCCeEEEEEcCcchhHHhhchHHHHH
Q 019702 179 RMQVPEPSLQHKVMIEAVENHMP--EVIIVDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDL 249 (337)
Q Consensus 179 ~~~~~S~g~k~r~~ia~al~~~P--~vlilDEp~~~ld~-------~~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~l 249 (337)
....+|+||+||+.||++|.++| +++||||||+++|. +.+.++.+.|.|||+++|+++++. .||+++ .
T Consensus 484 ~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~~~i~-~aD~vi--~ 560 (924)
T TIGR00630 484 AAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDEETIR-AADYVI--D 560 (924)
T ss_pred CcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHh-hCCEEE--E
Confidence 34567999999999999999986 89999999999994 456677778999999999999875 899999 8
Q ss_pred h------cCceEEEecCHHHHHH
Q 019702 250 I------GGVDTVTLGDEEARAR 266 (337)
Q Consensus 250 l------~~G~iv~~g~~~~~~~ 266 (337)
| ++|++++.|+++++..
T Consensus 561 LgpgaG~~~G~Iv~~g~~~el~~ 583 (924)
T TIGR00630 561 IGPGAGIHGGEVVASGTPEEILA 583 (924)
T ss_pred ecccccCCCCEEeeccCHHHHhc
Confidence 9 7899999999998864
No 444
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=99.24 E-value=6.3e-12 Score=132.14 Aligned_cols=119 Identities=15% Similarity=0.188 Sum_probs=77.8
Q ss_pred hhhcccCC-CEEEEEcCCCCcHHHHHHHHHcc-ccccCCCeEEEEcCC--cccccCCCCcccccc----cchhccCCCcc
Q 019702 115 VYDLLHYG-KSILFVGRPGVGKTTVMREIARV-LSDEFQKRVVIVDTS--NEIGGDGDIPHSAIG----TARRMQVPEPS 186 (337)
Q Consensus 115 l~~~v~~g-~~v~IiGpnGsGKTTLL~~l~gl-l~~~~~~~i~~v~~~--~ei~~~~~~~~~~~~----~~~~~~~~S~g 186 (337)
+++.+..+ +.++|+||||+||||||+.+++. +.+..+. +++.. ..++....+. ..++ .......+|++
T Consensus 314 ~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G~---~Vpa~~~~~~~~~d~i~-~~i~~~~si~~~LStfS~~ 389 (771)
T TIGR01069 314 FTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQSGI---PIPANEHSEIPYFEEIF-ADIGDEQSIEQNLSTFSGH 389 (771)
T ss_pred ceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHHhCC---CccCCccccccchhhee-eecChHhHHhhhhhHHHHH
Confidence 45566666 79999999999999999999998 3443221 11111 1121110000 0000 11234556889
Q ss_pred hhHHHHHHHHHhhCCcEEEEcCCCCHHHH--------HHHHHHHhcCCeEEEEEcCcchh
Q 019702 187 LQHKVMIEAVENHMPEVIIVDEIGTEAEA--------HACRSIAERGVMLIGTAHGEWLE 238 (337)
Q Consensus 187 ~k~r~~ia~al~~~P~vlilDEp~~~ld~--------~~l~~~~~~G~tvi~t~H~~~~~ 238 (337)
+++...+...+ ..|.++|+|||+++.|. ..+..+.+.|.++|+|||+.++.
T Consensus 390 m~~~~~il~~~-~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~~viitTH~~eL~ 448 (771)
T TIGR01069 390 MKNISAILSKT-TENSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQVLITTHYKELK 448 (771)
T ss_pred HHHHHHHHHhc-CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHHH
Confidence 98877766554 68999999999998883 23445566799999999998764
No 445
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.23 E-value=9e-12 Score=132.86 Aligned_cols=86 Identities=15% Similarity=0.127 Sum_probs=75.5
Q ss_pred hccCCCcchhHHHHHHHHHhhCC--cEEEEcCCCCHHHH-------HHHHHHHhcCCeEEEEEcCcchhHHhhchHHHHH
Q 019702 179 RMQVPEPSLQHKVMIEAVENHMP--EVIIVDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDL 249 (337)
Q Consensus 179 ~~~~~S~g~k~r~~ia~al~~~P--~vlilDEp~~~ld~-------~~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~l 249 (337)
....+|+||+||++||++|..+| +++||||||+++|. +.+.++++.|.|||+++|+++++. .||+++ +
T Consensus 486 ~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~~~~i~-~aD~vi--~ 562 (943)
T PRK00349 486 SAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHDEDTIR-AADYIV--D 562 (943)
T ss_pred chhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-hCCEEE--E
Confidence 34567999999999999999997 99999999999994 456667778999999999999875 699999 8
Q ss_pred h------cCceEEEecCHHHHHHh
Q 019702 250 I------GGVDTVTLGDEEARARR 267 (337)
Q Consensus 250 l------~~G~iv~~g~~~~~~~~ 267 (337)
| ++|++++.|+++++...
T Consensus 563 LgpgaG~~~G~iv~~g~~~e~~~~ 586 (943)
T PRK00349 563 IGPGAGVHGGEVVASGTPEEIMKN 586 (943)
T ss_pred eccccCCCCCEEeeccCHHHHhcC
Confidence 9 88999999999998653
No 446
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.18 E-value=1.8e-11 Score=117.46 Aligned_cols=136 Identities=15% Similarity=0.196 Sum_probs=93.5
Q ss_pred hhhhcccCC-----CEEEEEcCCCCcHHHHHHHHHccccccCCCe-----EEEEcCCc--ccccC----------CCCcc
Q 019702 114 MVYDLLHYG-----KSILFVGRPGVGKTTVMREIARVLSDEFQKR-----VVIVDTSN--EIGGD----------GDIPH 171 (337)
Q Consensus 114 ~l~~~v~~g-----~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~-----i~~v~~~~--ei~~~----------~~~~~ 171 (337)
++.+.+..| +++..+|.||.||||++++++|.++|+.++. |.+-++.. +.... ..+-+
T Consensus 354 ~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~~e~p~lnVSykpqkispK~~~tvR~ll~~kIr~ay~~ 433 (592)
T KOG0063|consen 354 DFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEGGEIPVLNVSYKPQKISPKREGTVRQLLHTKIRDAYMH 433 (592)
T ss_pred eEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCccCcccccceeccccccCccccchHHHHHHHHhHhhhcC
Confidence 344456666 4788999999999999999999999885443 22222211 10000 00000
Q ss_pred c-----cccc-------chhccCCCcchhHHHHHHHHHhhCCcEEEEcCCCCHHHHH-------HHHH-HHhcCCeEEEE
Q 019702 172 S-----AIGT-------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAH-------ACRS-IAERGVMLIGT 231 (337)
Q Consensus 172 ~-----~~~~-------~~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~~ld~~-------~l~~-~~~~G~tvi~t 231 (337)
. .+.. -+.+..+|||+.||++++.+|-...++.++|||.+-+|.+ .+++ +....+|-+++
T Consensus 434 pqF~~dvmkpL~ie~i~dqevq~lSggelQRval~KOGGKpAdvYliDEpsAylDSeQRi~AskvikRfilhakktafvV 513 (592)
T KOG0063|consen 434 PQFVNDVMKPLQIENIIDQEVQGLSGGELQRVALALCLGKPADVYLIDEPSAYLDSEQRIIASKVIKRFILHAKKTAFVV 513 (592)
T ss_pred HHHHHhhhhhhhHHHHHhHHhhcCCchhhHHHHHHHhcCCCCceEEecCchhhcChHHHHHHHHHHHHHHHhccchhhhh
Confidence 0 0000 1345668999999999999999999999999999988842 2333 23567899999
Q ss_pred EcCcchhHHhhchHHHHHhc
Q 019702 232 AHGEWLENIIKNPILSDLIG 251 (337)
Q Consensus 232 ~H~~~~~~~~~d~v~~~ll~ 251 (337)
.||.-.+..++|+++ +..
T Consensus 514 EhdfImaTYladrvi--vf~ 531 (592)
T KOG0063|consen 514 EHDFIMATYLADRVI--VFE 531 (592)
T ss_pred hhHHHHHHhhcceeE--EEe
Confidence 999988888899988 544
No 447
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.15 E-value=1.8e-10 Score=107.37 Aligned_cols=70 Identities=11% Similarity=-0.000 Sum_probs=50.1
Q ss_pred CCcchhHHHHHHHHHh---------hCCcEEEEcCCCCHHHHHH---HHH-HHhcCCeEEEEEcCcchhHHhh---chHH
Q 019702 183 PEPSLQHKVMIEAVEN---------HMPEVIIVDEIGTEAEAHA---CRS-IAERGVMLIGTAHGEWLENIIK---NPIL 246 (337)
Q Consensus 183 ~S~g~k~r~~ia~al~---------~~P~vlilDEp~~~ld~~~---l~~-~~~~G~tvi~t~H~~~~~~~~~---d~v~ 246 (337)
+|.||+++++++++++ .+|+++++|||++++|... +.. +.+.+ .+++++|+......+| ..++
T Consensus 184 lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~~-q~ii~~~~~~~~~~~~~~~~~i~ 262 (270)
T cd03242 184 GSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGRV-QTFVTTTDLADFDALWLRRAQIF 262 (270)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcCC-CEEEEeCCchhccchhccCccEE
Confidence 5999999999999985 6999999999999999643 333 22334 5677777766665665 3455
Q ss_pred HHHhcCceE
Q 019702 247 SDLIGGVDT 255 (337)
Q Consensus 247 ~~ll~~G~i 255 (337)
-+++|++
T Consensus 263 --~l~~g~i 269 (270)
T cd03242 263 --RVDAGTL 269 (270)
T ss_pred --EEeCcEE
Confidence 4555553
No 448
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.11 E-value=1.5e-10 Score=104.41 Aligned_cols=128 Identities=16% Similarity=0.129 Sum_probs=72.9
Q ss_pred hhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEcC-CcccccCCCCcccccccchh-ccCCCcchhH
Q 019702 112 IDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDT-SNEIGGDGDIPHSAIGTARR-MQVPEPSLQH 189 (337)
Q Consensus 112 ~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~~-~~ei~~~~~~~~~~~~~~~~-~~~~S~g~k~ 189 (337)
++++++...+|++++|+||||+||||+++.++...--..-+ .+++. ..++.....+. ..++.... ..-.|.-+..
T Consensus 20 ~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la~~G--~~vpa~~~~i~~~~~i~-~~~~~~d~~~~~~StF~~e 96 (218)
T cd03286 20 PNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMAQMG--MDVPAKSMRLSLVDRIF-TRIGARDDIMKGESTFMVE 96 (218)
T ss_pred EeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHHHcC--CccCccccEeccccEEE-EecCcccccccCcchHHHH
Confidence 77888888889999999999999999999998864321000 01111 01111000000 00000000 0011222222
Q ss_pred HHHHHHHH--hhCCcEEEEcCCCCHHHH-------HH-HHHHHhc-CCeEEEEEcCcchhHHhh
Q 019702 190 KVMIEAVE--NHMPEVIIVDEIGTEAEA-------HA-CRSIAER-GVMLIGTAHGEWLENIIK 242 (337)
Q Consensus 190 r~~ia~al--~~~P~vlilDEp~~~ld~-------~~-l~~~~~~-G~tvi~t~H~~~~~~~~~ 242 (337)
...++.++ +.+|.++++|||+++.+. .+ +..+.+. +.++|++||+.++...++
T Consensus 97 ~~~~~~il~~~~~~sLvLlDE~~~Gt~~~dg~~la~ail~~L~~~~~~~~i~~TH~~el~~~~~ 160 (218)
T cd03286 97 LSETANILRHATPDSLVILDELGRGTSTHDGYAIAHAVLEYLVKKVKCLTLFSTHYHSLCDEFH 160 (218)
T ss_pred HHHHHHHHHhCCCCeEEEEecccCCCCchHHHHHHHHHHHHHHHhcCCcEEEEeccHHHHHHhh
Confidence 22233333 468999999999776542 22 4556665 899999999999776554
No 449
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=99.10 E-value=1.6e-10 Score=100.99 Aligned_cols=122 Identities=17% Similarity=0.175 Sum_probs=75.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEcC--Ccc-ccc---CCCCccccc---c----cchhccCCCcchhH-
Q 019702 124 SILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDT--SNE-IGG---DGDIPHSAI---G----TARRMQVPEPSLQH- 189 (337)
Q Consensus 124 ~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~~--~~e-i~~---~~~~~~~~~---~----~~~~~~~~S~g~k~- 189 (337)
+++|.||||+|||||...++-..... +..+.|+.- +.+ +.. ..+++...+ + ........|+++++
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~-g~~v~~~s~e~~~~~~~~~~~~~g~~~~~l~~~g~l~~~d~~~~~~s~~~~~~ 79 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLAR-GEPGLYVTLEESPEELIENAESLGWDLERLEDEGLLAIVDADPDEIGPAESSL 79 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHC-CCcEEEEECCCCHHHHHHHHHHcCCChHHHHhcCCeEEEecCccccchhhhhh
Confidence 37899999999999987664433222 566666642 211 100 001111100 0 00122334777766
Q ss_pred -----HHHHHHHHhhCCcEEEEcCCCCHHH----------HHHHHHHHhcCCeEEEEEcCcch---------hHHhhchH
Q 019702 190 -----KVMIEAVENHMPEVIIVDEIGTEAE----------AHACRSIAERGVMLIGTAHGEWL---------ENIIKNPI 245 (337)
Q Consensus 190 -----r~~ia~al~~~P~vlilDEp~~~ld----------~~~l~~~~~~G~tvi~t~H~~~~---------~~~~~d~v 245 (337)
......+...+|+++++|||++.+| .+.+..+++.|.|+|+++|.... +..+||.+
T Consensus 80 ~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g~tvi~v~~~~~~~~~~~~~~~~~~~aD~i 159 (187)
T cd01124 80 RLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFGVTTLLTSEQSGLEGTGFGGGDVEYLVDGV 159 (187)
T ss_pred hHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCCCEEEEEeccccCCCcccCcCceeEeeeEE
Confidence 5555666778999999999999876 23455667779999999998764 44566666
Q ss_pred H
Q 019702 246 L 246 (337)
Q Consensus 246 ~ 246 (337)
+
T Consensus 160 i 160 (187)
T cd01124 160 I 160 (187)
T ss_pred E
Confidence 5
No 450
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=99.09 E-value=9.8e-11 Score=123.49 Aligned_cols=120 Identities=18% Similarity=0.226 Sum_probs=77.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHccc-cccCCCeEEEEcCC--cccccCCCCcccccc----cchhccCCCcchhHHHHHH
Q 019702 122 GKSILFVGRPGVGKTTVMREIARVL-SDEFQKRVVIVDTS--NEIGGDGDIPHSAIG----TARRMQVPEPSLQHKVMIE 194 (337)
Q Consensus 122 g~~v~IiGpnGsGKTTLL~~l~gll-~~~~~~~i~~v~~~--~ei~~~~~~~~~~~~----~~~~~~~~S~g~k~r~~ia 194 (337)
+.+++|+|||++||||+|+.++... -.+.+. +++.. ..++....+. ..++ .......+|+++++++.++
T Consensus 327 ~~~~iITGpN~gGKTt~lktigl~~~maq~G~---~vpa~~~~~i~~~~~i~-~~ig~~~si~~~lStfS~~m~~~~~Il 402 (782)
T PRK00409 327 KTVLVITGPNTGGKTVTLKTLGLAALMAKSGL---PIPANEPSEIPVFKEIF-ADIGDEQSIEQSLSTFSGHMTNIVRIL 402 (782)
T ss_pred ceEEEEECCCCCCcHHHHHHHHHHHHHHHhCC---CcccCCCccccccceEE-EecCCccchhhchhHHHHHHHHHHHHH
Confidence 4689999999999999999986542 111111 11111 1221110000 0000 0123445688999998888
Q ss_pred HHHhhCCcEEEEcCCCCHHHHH--------HHHHHHhcCCeEEEEEcCcchhHHhhchHH
Q 019702 195 AVENHMPEVIIVDEIGTEAEAH--------ACRSIAERGVMLIGTAHGEWLENIIKNPIL 246 (337)
Q Consensus 195 ~al~~~P~vlilDEp~~~ld~~--------~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~ 246 (337)
+++ .+|.++++|||+++.|.. .+..+.+.|.++|+|||+.++....++...
T Consensus 403 ~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~el~~~~~~~~~ 461 (782)
T PRK00409 403 EKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKELKALMYNREG 461 (782)
T ss_pred HhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChHHHHHHHhcCCC
Confidence 777 799999999999988842 234455678999999999987776665543
No 451
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=99.08 E-value=6.2e-10 Score=93.98 Aligned_cols=115 Identities=23% Similarity=0.176 Sum_probs=71.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEcCCcccccC---------CCCcccccccchhccCCCcchhHHHHHH
Q 019702 124 SILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGD---------GDIPHSAIGTARRMQVPEPSLQHKVMIE 194 (337)
Q Consensus 124 ~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~~~~ei~~~---------~~~~~~~~~~~~~~~~~S~g~k~r~~ia 194 (337)
+++|.||||+||||+++.+++...+. ++.+.+++........ .................+.....+.+.+
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~-~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATK-GGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAER 79 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhc-CCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHH
Confidence 37899999999999999999998764 6778777654322100 0000000000011112223344456678
Q ss_pred HHHhhCCcEEEEcCCCCHHH----------------HHHHH-HHHhcCCeEEEEEcCcchhH
Q 019702 195 AVENHMPEVIIVDEIGTEAE----------------AHACR-SIAERGVMLIGTAHGEWLEN 239 (337)
Q Consensus 195 ~al~~~P~vlilDEp~~~ld----------------~~~l~-~~~~~G~tvi~t~H~~~~~~ 239 (337)
.+...+|+++++||++.-.+ +..+. .+.+.++++|+++|......
T Consensus 80 ~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~~~~ 141 (165)
T cd01120 80 LRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQVPSGDK 141 (165)
T ss_pred HHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEecCCccc
Confidence 88889999999999985322 11222 23345899999999887443
No 452
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=99.02 E-value=2.1e-09 Score=97.90 Aligned_cols=114 Identities=19% Similarity=0.199 Sum_probs=65.2
Q ss_pred cccCCCEEEEEcCCCCcHHHH-HHHHHccccccCCCeEEEEcCCcc----------cccCC--CCcccccccchhccCCC
Q 019702 118 LLHYGKSILFVGRPGVGKTTV-MREIARVLSDEFQKRVVIVDTSNE----------IGGDG--DIPHSAIGTARRMQVPE 184 (337)
Q Consensus 118 ~v~~g~~v~IiGpnGsGKTTL-L~~l~gll~~~~~~~i~~v~~~~e----------i~~~~--~~~~~~~~~~~~~~~~S 184 (337)
-+++|++++|+|+|||||||| ++.+.+++++ +.++.|+..... +++.. ......+.........+
T Consensus 20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~--g~~~~yi~~e~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~ 97 (230)
T PRK08533 20 GIPAGSLILIEGDESTGKSILSQRLAYGFLQN--GYSVSYVSTQLTTTEFIKQMMSLGYDINKKLISGKLLYIPVYPLLS 97 (230)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhC--CCcEEEEeCCCCHHHHHHHHHHhCCchHHHhhcCcEEEEEeccccc
Confidence 378899999999999999999 6888887765 456666643211 11100 00000000000011234
Q ss_pred cchhHHHHHHHHHh----hCCcEEEEcCCCCHH----HH-------HHHHHHHhcCCeEEEEEc
Q 019702 185 PSLQHKVMIEAVEN----HMPEVIIVDEIGTEA----EA-------HACRSIAERGVMLIGTAH 233 (337)
Q Consensus 185 ~g~k~r~~ia~al~----~~P~vlilDEp~~~l----d~-------~~l~~~~~~G~tvi~t~H 233 (337)
+...++..+...+. .+|+++++|||++.+ |. +.+..+++.|.|+++|+|
T Consensus 98 ~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d~~~~~~l~~~l~~l~~~g~tvi~t~~ 161 (230)
T PRK08533 98 GNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDASEVAVNDLMAFFKRISSLNKVIILTAN 161 (230)
T ss_pred ChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcchHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 44444444444333 369999999999987 42 223444566887766554
No 453
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.95 E-value=5.5e-09 Score=84.92 Aligned_cols=111 Identities=26% Similarity=0.321 Sum_probs=68.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEcCCcccccCCCCcccccccchhccCCCcchhHHHHHHHHHhhCC
Q 019702 122 GKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMP 201 (337)
Q Consensus 122 g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~~~~ei~~~~~~~~~~~~~~~~~~~~S~g~k~r~~ia~al~~~P 201 (337)
+..++|+||+||||||+++.++..+.... ..+.++......... .................+....+..++.+....|
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPG-GGVIYIDGEDILEEV-LDQLLLIIVGGKKASGSGELRLRLALALARKLKP 79 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCC-CCEEEECCEEccccC-HHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCC
Confidence 67899999999999999999999987642 345555432211000 0000000000112223456667778888888889
Q ss_pred cEEEEcCCCCHHHHHH-------------HHHHHhcCCeEEEEEcC
Q 019702 202 EVIIVDEIGTEAEAHA-------------CRSIAERGVMLIGTAHG 234 (337)
Q Consensus 202 ~vlilDEp~~~ld~~~-------------l~~~~~~G~tvi~t~H~ 234 (337)
++|++||+....+... .......+..+|+++|.
T Consensus 80 ~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 125 (148)
T smart00382 80 DVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTND 125 (148)
T ss_pred CEEEEECCcccCCHHHHHHHHhhhhhHHHHHHHhcCCCEEEEEeCC
Confidence 9999999988544221 11223446788888885
No 454
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.93 E-value=1e-08 Score=93.38 Aligned_cols=134 Identities=18% Similarity=0.199 Sum_probs=80.2
Q ss_pred cccCCCEEEEEcCCCCcHHHHHHHHH-ccccccCCCeEEEEcCCccccc------CCCCcccc------ccc----chhc
Q 019702 118 LLHYGKSILFVGRPGVGKTTVMREIA-RVLSDEFQKRVVIVDTSNEIGG------DGDIPHSA------IGT----ARRM 180 (337)
Q Consensus 118 ~v~~g~~v~IiGpnGsGKTTLL~~l~-gll~~~~~~~i~~v~~~~ei~~------~~~~~~~~------~~~----~~~~ 180 (337)
=+++|.+++|.|+||||||||...++ +.+.. +.++.|+........ ..++.-.. +.. ....
T Consensus 21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~--g~~~~y~~~e~~~~~~~~~~~~~g~~~~~~~~~g~l~i~~~~~~~~ 98 (234)
T PRK06067 21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALKQ--GKKVYVITTENTSKSYLKQMESVKIDISDFFLWGYLRIFPLNTEGF 98 (234)
T ss_pred CCcCCcEEEEECCCCCChHHHHHHHHHHHHhC--CCEEEEEEcCCCHHHHHHHHHHCCCChhHHHhCCCceEEecccccc
Confidence 36789999999999999999999885 33332 677777754321100 00000000 000 0111
Q ss_pred cCCCcchhHHHHHHHHHhh--CCcEEEEcCCCCHHH---H----H---HHHHHHhcCCeEEEEEcCcchhHHhhchHHHH
Q 019702 181 QVPEPSLQHKVMIEAVENH--MPEVIIVDEIGTEAE---A----H---ACRSIAERGVMLIGTAHGEWLENIIKNPILSD 248 (337)
Q Consensus 181 ~~~S~g~k~r~~ia~al~~--~P~vlilDEp~~~ld---~----~---~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ 248 (337)
...+.++++.+........ +|+++++|||++.++ . + .+..+++.|.|+++++|........++++.
T Consensus 99 ~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~~l~~l~~~g~tvllt~~~~~~~~~~~~~~~-- 176 (234)
T PRK06067 99 EWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLTEAKNLVDLGKTILITLHPYAFSEELLSRIR-- 176 (234)
T ss_pred ccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcCCHHHHHHHH--
Confidence 2234455666666666655 999999999996433 1 2 234446778999999998775544555544
Q ss_pred HhcCceE
Q 019702 249 LIGGVDT 255 (337)
Q Consensus 249 ll~~G~i 255 (337)
.+.+|.+
T Consensus 177 ~l~DgvI 183 (234)
T PRK06067 177 SICDVYL 183 (234)
T ss_pred hheEEEE
Confidence 3444554
No 455
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=98.89 E-value=7.1e-09 Score=102.53 Aligned_cols=147 Identities=16% Similarity=0.115 Sum_probs=90.9
Q ss_pred chhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEcCCc-ccccC--CCCccc----ccccchhccCC
Q 019702 111 HIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSN-EIGGD--GDIPHS----AIGTARRMQVP 183 (337)
Q Consensus 111 ~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~~~~-ei~~~--~~~~~~----~~~~~~~~~~~ 183 (337)
+++.+ +.+.+|+.++|+|+||+|||||+++|+++..++. +.+..+.++. ++... ..+... .+... .....
T Consensus 148 vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~-gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv-~~~~~ 224 (438)
T PRK07721 148 AIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSADL-NVIALIGERGREVREFIERDLGPEGLKRSIVVV-ATSDQ 224 (438)
T ss_pred hhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCCe-EEEEEEecCCccHHHHHHhhcChhhhcCeEEEE-ECCCC
Confidence 46777 7789999999999999999999999999998863 4444443332 22210 000000 00000 01122
Q ss_pred CcchhHHHHH---HHH--Hh-hCCc-EEEEc-----------------CC--CCHHHH-------HHHHHHH--hcCC--
Q 019702 184 EPSLQHKVMI---EAV--EN-HMPE-VIIVD-----------------EI--GTEAEA-------HACRSIA--ERGV-- 226 (337)
Q Consensus 184 S~g~k~r~~i---a~a--l~-~~P~-vlilD-----------------Ep--~~~ld~-------~~l~~~~--~~G~-- 226 (337)
|..++.+.+. +.| ++ +.-+ +|++| || +.++|. +.+.++. +.|.
T Consensus 225 ~~~~r~~~~~~a~~iAEyfr~~g~~Vll~~Dsltr~A~A~rEisl~~ge~P~~~G~dp~~~~~l~~ller~~~~~~GsIT 304 (438)
T PRK07721 225 PALMRIKGAYTATAIAEYFRDQGLNVMLMMDSVTRVAMAQREIGLAVGEPPTTKGYTPSVFAILPKLLERTGTNASGSIT 304 (438)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCcEEEEEeChHHHHHHHHHHHHhcCCCCccccCCHHHHHHHHHHHHHhcCCCCCCee
Confidence 4455555432 222 21 2233 56777 54 335553 3344444 2575
Q ss_pred ---eEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHH
Q 019702 227 ---MLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEAR 264 (337)
Q Consensus 227 ---tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~ 264 (337)
||++.+|+++. .+|+++. .+.+|+++..++..+.
T Consensus 305 ~~~TVlv~~hdm~e--~i~d~v~--~i~dG~Ivls~~la~~ 341 (438)
T PRK07721 305 AFYTVLVDGDDMNE--PIADTVR--GILDGHFVLDRQLANK 341 (438)
T ss_pred eEEEEEEECCCCCc--hhhhhEE--EecCEEEEEeccHHHC
Confidence 99999999984 7999999 9999999999888753
No 456
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=98.78 E-value=6.6e-09 Score=100.05 Aligned_cols=132 Identities=18% Similarity=0.248 Sum_probs=93.1
Q ss_pred ccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeE--------EEEcCCcccccC------------------CCCccc
Q 019702 119 LHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRV--------VIVDTSNEIGGD------------------GDIPHS 172 (337)
Q Consensus 119 v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i--------~~v~~~~ei~~~------------------~~~~~~ 172 (337)
..+|+..+++|.||-||||-++.++|-++|+.++-. .......|+... ..+|..
T Consensus 97 prpg~vlglvgtngigkstAlkilagk~kpnlg~~~~pp~w~~il~~frgselq~yftk~le~~lk~~~kpQyvd~ipr~ 176 (592)
T KOG0063|consen 97 PRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRYDNPPDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQYVDQIPRA 176 (592)
T ss_pred CCcchhccccccCcccHHHHHHHHhCCCCCCCCCCCCCcchHHHhhhhhhHHHhhhhhhhccccccCcCChHHHHHHHHH
Confidence 357999999999999999999999999998743211 000011111100 000000
Q ss_pred c---cc------------------------cchhccCCCcchhHHHHHHHHHhhCCcEEEEcCCCCHHHHH-------HH
Q 019702 173 A---IG------------------------TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAH-------AC 218 (337)
Q Consensus 173 ~---~~------------------------~~~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~~ld~~-------~l 218 (337)
. ++ ..+....+|||+-||.++|.+-.+..|+.++|||.+.+|++ .+
T Consensus 177 ~k~~v~~~l~~~~~r~~~~~~~~~~~L~~~~~re~~~lsggelqrfaia~~~vq~advyMFDEpSsYLDVKQRLkaA~~I 256 (592)
T KOG0063|consen 177 VKGTVGSLLDRKDERDNKEEVCDQLDLNNLLDREVEQLSGGELQRFAIAMVCVQKADVYMFDEPSSYLDVKQRLKAAITI 256 (592)
T ss_pred HHHHHHHHHHHHhhcccHHHHHHHHHHhhHHHhhhhhcccchhhhhhhhhhhhhhcceeEecCCcccchHHHhhhHHHHH
Confidence 0 00 01345567999999999999999999999999999999953 35
Q ss_pred HHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcC
Q 019702 219 RSIAERGVMLIGTAHGEWLENIIKNPILSDLIGG 252 (337)
Q Consensus 219 ~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~ 252 (337)
+.+.....-||++.||++..+.+.|-+. .+.+
T Consensus 257 Rsl~~p~~YiIVVEHDLsVLDylSDFiC--cLYG 288 (592)
T KOG0063|consen 257 RSLINPDRYIIVVEHDLSVLDYLSDFIC--CLYG 288 (592)
T ss_pred HHhhCCCCeEEEEEeechHHHhhhccee--EEec
Confidence 5555667789999999999998888877 5543
No 457
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=98.77 E-value=4e-08 Score=88.37 Aligned_cols=64 Identities=13% Similarity=0.148 Sum_probs=39.9
Q ss_pred CCCcchhHHHHHHHHHh----hCCcEEEEcCCCCHHHHHH---HH-HHHh--cCCeEEEEEcCcchhHHhhchHH
Q 019702 182 VPEPSLQHKVMIEAVEN----HMPEVIIVDEIGTEAEAHA---CR-SIAE--RGVMLIGTAHGEWLENIIKNPIL 246 (337)
Q Consensus 182 ~~S~g~k~r~~ia~al~----~~P~vlilDEp~~~ld~~~---l~-~~~~--~G~tvi~t~H~~~~~~~~~d~v~ 246 (337)
.+|+||+..++||..++ ....+++||||.+++|... +. .+.+ ....+|+|||...... .++..+
T Consensus 136 ~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~~~Q~ii~Th~~~~~~-~a~~~~ 209 (220)
T PF02463_consen 136 FLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSKQSQFIITTHNPEMFE-DADKLI 209 (220)
T ss_dssp GS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTTTSEEEEE-S-HHHHT-T-SEEE
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccc
Confidence 67999999988886654 3567999999999999532 11 2222 2478999999987553 445443
No 458
>COG3910 Predicted ATPase [General function prediction only]
Probab=98.67 E-value=1.4e-07 Score=82.11 Aligned_cols=125 Identities=16% Similarity=0.193 Sum_probs=71.3
Q ss_pred chhhhhhccc-CCCEEEEEcCCCCcHHHHHHHHHccccccC--CCe-E-EEEcCC-ccccc------CCCCccc------
Q 019702 111 HIDMVYDLLH-YGKSILFVGRPGVGKTTVMREIARVLSDEF--QKR-V-VIVDTS-NEIGG------DGDIPHS------ 172 (337)
Q Consensus 111 ~~~~l~~~v~-~g~~v~IiGpnGsGKTTLL~~l~gll~~~~--~~~-i-~~v~~~-~ei~~------~~~~~~~------ 172 (337)
+.+.+...++ ..-++.|+|.|||||||||-+|+-...-+. +++ . ..++.. ..+.. ....+..
T Consensus 25 a~r~l~~~LeF~apIT~i~GENGsGKSTLLEaiA~~~~~n~aGg~~n~~~~~~~s~s~l~~~~k~~~~~k~~~g~FlRAE 104 (233)
T COG3910 25 AFRHLEERLEFRAPITFITGENGSGKSTLLEAIAAGMGFNAAGGGKNFKGELDASHSALVDYAKLHKRKKPPIGFFLRAE 104 (233)
T ss_pred HHHhhhhhccccCceEEEEcCCCccHHHHHHHHHhhccccccCCCcCcCcccccccchHHHhHHHhhcCCCCcceEEehh
Confidence 3455554443 345899999999999999999986654321 111 0 000000 11100 0000000
Q ss_pred c----------cc-c----chhccCCCcchhHHHHHHHHHhhCCcEEEEcCCCCHHHH-------HHHHHHHhcCCeEEE
Q 019702 173 A----------IG-T----ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEA-------HACRSIAERGVMLIG 230 (337)
Q Consensus 173 ~----------~~-~----~~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~~ld~-------~~l~~~~~~G~tvi~ 230 (337)
. .. . .+...-.|.|+.....+.. ....--+.+||||-+++.+ ..+..+++.|..+|+
T Consensus 105 s~yn~as~~De~~~e~~~~~~sLh~~SHGEsf~~i~~~-rf~~~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~Ii 183 (233)
T COG3910 105 SFYNVASYLDEADGEANYGGRSLHHMSHGESFLAIFHN-RFNGQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIII 183 (233)
T ss_pred HHHHHHHHHHhhhhhcccCCcchhhhccchHHHHHHHH-HhccCceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEE
Confidence 0 00 0 0112334888876544444 3456679999999998763 345677889999999
Q ss_pred EEcCcc
Q 019702 231 TAHGEW 236 (337)
Q Consensus 231 t~H~~~ 236 (337)
+||..-
T Consensus 184 ATHSPi 189 (233)
T COG3910 184 ATHSPI 189 (233)
T ss_pred EecChh
Confidence 999875
No 459
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=98.66 E-value=2.3e-08 Score=89.43 Aligned_cols=55 Identities=11% Similarity=0.210 Sum_probs=40.7
Q ss_pred CcchhHHHHHHHHHhhCC---cEEEEcCCCCHHHHHHHHH-------HHhcCCeEEEEEcCcchh
Q 019702 184 EPSLQHKVMIEAVENHMP---EVIIVDEIGTEAEAHACRS-------IAERGVMLIGTAHGEWLE 238 (337)
Q Consensus 184 S~g~k~r~~ia~al~~~P---~vlilDEp~~~ld~~~l~~-------~~~~G~tvi~t~H~~~~~ 238 (337)
|.|+++.+.+...+...+ .++++|||-+++.+.+... +.+.+..+|+|||+..++
T Consensus 238 S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTHSp~il 302 (303)
T PF13304_consen 238 SSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTHSPFIL 302 (303)
T ss_dssp -HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES-GGG-
T ss_pred CHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCccchhc
Confidence 889999988888777666 8999999999988644322 223478999999998754
No 460
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=98.65 E-value=5.6e-08 Score=95.69 Aligned_cols=137 Identities=15% Similarity=0.136 Sum_probs=87.3
Q ss_pred hhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEcCC-ccccc-------CCCCcccccccchhccCC
Q 019702 112 IDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTS-NEIGG-------DGDIPHSAIGTARRMQVP 183 (337)
Q Consensus 112 ~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~~~-~ei~~-------~~~~~~~~~~~~~~~~~~ 183 (337)
++.+ +.+.+|+.++|+|++|+|||||+++|++..+++ .+.+..+.++ .+... ...+.+..+ .......
T Consensus 147 ID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~-~gvI~~iGerg~ev~e~~~~~l~~~gl~~tvv--v~~tsd~ 222 (432)
T PRK06793 147 IDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKAD-INVISLVGERGREVKDFIRKELGEEGMRKSVV--VVATSDE 222 (432)
T ss_pred Eecc-ceecCCcEEEEECCCCCChHHHHHHHhccCCCC-eEEEEeCCCCcccHHHHHHHHhhhcccceeEE--EEECCCC
Confidence 4553 778899999999999999999999999999876 3445455443 22210 001111111 1123345
Q ss_pred CcchhHHHHHHHHHh-------hCCcEEEEcCCCCHHHHHH-HHHH----HhcCCeEEEEEcCcchhHHhhchHHHHHhc
Q 019702 184 EPSLQHKVMIEAVEN-------HMPEVIIVDEIGTEAEAHA-CRSI----AERGVMLIGTAHGEWLENIIKNPILSDLIG 251 (337)
Q Consensus 184 S~g~k~r~~ia~al~-------~~P~vlilDEp~~~ld~~~-l~~~----~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~ 251 (337)
|.+++++++.+++.. .+|-+|++|+||...+... +..+ -..|.+..+.+|-. .++.|.- -.+
T Consensus 223 s~~~r~ra~~~a~~iAEyfr~~G~~VLlilDslTr~a~A~reisl~~~e~p~~G~~~~~~s~l~----~L~ERag--~~~ 296 (432)
T PRK06793 223 SHLMQLRAAKLATSIAEYFRDQGNNVLLMMDSVTRFADARRSVDIAVKELPIGGKTLLMESYMK----KLLERSG--KTQ 296 (432)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCcEEEEecchHHHHHHHHHHHHHhcCCCCCCeeeeeeccch----hHHHHhc--cCC
Confidence 789999988887776 6899999999999988532 2111 12366666666632 3444444 345
Q ss_pred CceEEEe
Q 019702 252 GVDTVTL 258 (337)
Q Consensus 252 ~G~iv~~ 258 (337)
+|.+-+.
T Consensus 297 ~GSiT~~ 303 (432)
T PRK06793 297 KGSITGI 303 (432)
T ss_pred CcceEEE
Confidence 6765443
No 461
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.64 E-value=4.7e-08 Score=89.96 Aligned_cols=134 Identities=16% Similarity=0.174 Sum_probs=87.2
Q ss_pred cccCCCEEEEEcCCCCcHHHHHHHHHccccccCCC-e-EEE-EcCC-ccc------------ccCCCCcc-ccc------
Q 019702 118 LLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK-R-VVI-VDTS-NEI------------GGDGDIPH-SAI------ 174 (337)
Q Consensus 118 ~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~-~-i~~-v~~~-~ei------------~~~~~~~~-~~~------ 174 (337)
.+.+|+.++|+||+|+|||||++.|.+.+...... . +++ +.++ .++ ......+. ...
T Consensus 12 ~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~ 91 (249)
T cd01128 12 PIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMV 91 (249)
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHH
Confidence 36789999999999999999999999988654111 2 222 2321 111 00000010 000
Q ss_pred ----------c--------cc------------hhccCCCcch--------hHHHHHHHHHhhCCcEEEEcCCCCHHHH-
Q 019702 175 ----------G--------TA------------RRMQVPEPSL--------QHKVMIEAVENHMPEVIIVDEIGTEAEA- 215 (337)
Q Consensus 175 ----------~--------~~------------~~~~~~S~g~--------k~r~~ia~al~~~P~vlilDEp~~~ld~- 215 (337)
+ .. ..-..+|+|+ +|++++|+++..++.|.++ +|+.+|.
T Consensus 92 ~~~a~~~~~~G~~vll~iDei~r~a~a~~ev~~~~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l--~T~~~d~~ 169 (249)
T cd01128 92 LEKAKRLVEHGKDVVILLDSITRLARAYNTVVPPSGKILSGGVDANALHKPKRFFGAARNIEEGGSLTII--ATALVDTG 169 (249)
T ss_pred HHHHHHHHHCCCCEEEEEECHHHhhhhhhhccccCCCCCCCCcChhhhhhhHHHHHHhcCCCCCCceEEe--eeheecCC
Confidence 0 00 0012248899 9999999998889999999 9887762
Q ss_pred ---H-H-HHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEE
Q 019702 216 ---H-A-CRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTV 256 (337)
Q Consensus 216 ---~-~-l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv 256 (337)
+ . +..+...+.+.|+.+|.+... ...+.+. +++.|.+.
T Consensus 170 ~~~~~~i~~~~~~~~~~~ivls~~la~~-~~~paI~--vl~s~sr~ 212 (249)
T cd01128 170 SRMDDVIFEEFKGTGNMELVLDRRLAER-RIFPAID--ILKSGTRK 212 (249)
T ss_pred CcccchHHHHHhcCCCcEEEEchHHhhC-CCCCeEE--EcCCCCcc
Confidence 1 2 344444678899999998754 4677787 88888873
No 462
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.62 E-value=3e-08 Score=108.52 Aligned_cols=72 Identities=14% Similarity=0.031 Sum_probs=62.8
Q ss_pred hhccCCCcchhHHHHHHHHHhh----------CCcEEEEcCCCCHHHH-------HHHHHHHhcCCeEEEEEcCcchhHH
Q 019702 178 RRMQVPEPSLQHKVMIEAVENH----------MPEVIIVDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENI 240 (337)
Q Consensus 178 ~~~~~~S~g~k~r~~ia~al~~----------~P~vlilDEp~~~ld~-------~~l~~~~~~G~tvi~t~H~~~~~~~ 240 (337)
+.+..+|||+++++++|+||+. +|++||+||||+++|. +++..+...|.+|+++||+.++...
T Consensus 946 r~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~~i~iisH~~~~~~~ 1025 (1042)
T TIGR00618 946 RPSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSKMIGIISHVPEFRER 1025 (1042)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHh
Confidence 3467899999999999999986 7999999999999994 4456666678999999999999999
Q ss_pred hhchHHHHHhc
Q 019702 241 IKNPILSDLIG 251 (337)
Q Consensus 241 ~~d~v~~~ll~ 251 (337)
+++++. ++.
T Consensus 1026 ~~~~i~--v~~ 1034 (1042)
T TIGR00618 1026 IPHRIL--VKK 1034 (1042)
T ss_pred hCCEEE--EEE
Confidence 999988 764
No 463
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=98.60 E-value=4e-07 Score=87.74 Aligned_cols=188 Identities=23% Similarity=0.328 Sum_probs=120.9
Q ss_pred ccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEcCCcccccCCCCcccccccchhccC-------CCcchhHHH
Q 019702 119 LHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQV-------PEPSLQHKV 191 (337)
Q Consensus 119 v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~~~~ei~~~~~~~~~~~~~~~~~~~-------~S~g~k~r~ 191 (337)
+-+|..++|-|.||.||||||--++--+... +++.|+....... +.-..+.+.++ +. ...-..
T Consensus 90 ~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~--~~vLYVsGEES~~-------QiklRA~RL~~~~~~l~l~a-Et~~e~ 159 (456)
T COG1066 90 LVPGSVILIGGDPGIGKSTLLLQVAARLAKR--GKVLYVSGEESLQ-------QIKLRADRLGLPTNNLYLLA-ETNLED 159 (456)
T ss_pred cccccEEEEccCCCCCHHHHHHHHHHHHHhc--CcEEEEeCCcCHH-------HHHHHHHHhCCCccceEEeh-hcCHHH
Confidence 4578899999999999999998887777653 4888885433211 10011111111 11 112223
Q ss_pred HHHHHHhhCCcEEEEcCCCC----HHH-------------HHHHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCce
Q 019702 192 MIEAVENHMPEVIIVDEIGT----EAE-------------AHACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVD 254 (337)
Q Consensus 192 ~ia~al~~~P~vlilDEp~~----~ld-------------~~~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~ 254 (337)
.++.+-..+|+++++|-+-. .++ .++++.++++|++++++.|-..+-....-++++|+.+ --
T Consensus 160 I~~~l~~~~p~lvVIDSIQT~~s~~~~SapGsVsQVRe~t~~L~~~AK~~~i~~fiVGHVTKeG~IAGPrvLEHmVD-tV 238 (456)
T COG1066 160 IIAELEQEKPDLVVIDSIQTLYSEEITSAPGSVSQVREVAAELMRLAKTKNIAIFIVGHVTKEGAIAGPRVLEHMVD-TV 238 (456)
T ss_pred HHHHHHhcCCCEEEEeccceeecccccCCCCcHHHHHHHHHHHHHHHHHcCCeEEEEEEEcccccccCchheeeeee-EE
Confidence 45555668999999999844 111 2334444566999999999988765555667766543 44
Q ss_pred EEEecCHHHHHHhhhHHHHhhcCCCchhhhHHhhhCCceeecCh-------------HHHHHHHHcCCCceE-EEeee
Q 019702 255 TVTLGDEEARARRCQKSILERKAPPTFYFLIEMRERHYWVTHKT-------------EKSVDMLLRGKTPLV-EIRKR 318 (337)
Q Consensus 255 iv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~-------------~~~~~~~~~~~~~~~-~~~~~ 318 (337)
+.+.|+...-++ ..+.+.+++|+.+...+++|.+.|+.-..+. +.++...++|.+|.+ |+++.
T Consensus 239 lyFEGd~~~~~R-iLR~vKNRFG~t~EiGvFeM~~~GL~eV~npS~lFL~er~~~~~GS~v~~~~EGtRpllvEvQAL 315 (456)
T COG1066 239 LYFEGDRHSRYR-ILRSVKNRFGATNELGVFEMTENGLREVSNPSALFLSERGEQTPGSAVVVVMEGTRPLLVEIQAL 315 (456)
T ss_pred EEEeccCCCcee-eeehhcccCCcccceeEEEEecCCeeEecCcHHhHhhcCCCCCCCcEEEEEEecccceEEEeeec
Confidence 566677665554 3466788999998888899999885433332 334555667777665 77775
No 464
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=98.56 E-value=1.9e-07 Score=99.87 Aligned_cols=120 Identities=18% Similarity=0.204 Sum_probs=71.6
Q ss_pred hhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccc--------cccCCCeEEEEcCCcccccCCCCcccccccc-hhccC
Q 019702 112 IDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVL--------SDEFQKRVVIVDTSNEIGGDGDIPHSAIGTA-RRMQV 182 (337)
Q Consensus 112 ~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll--------~~~~~~~i~~v~~~~ei~~~~~~~~~~~~~~-~~~~~ 182 (337)
++++.+. ..+.+++|+|||.+||||+||.++-.. -|.....+.+++. +. -.++.. ....-
T Consensus 598 pnd~~l~-~~~~~~iiTGpN~~GKSt~lr~v~l~~ilAq~G~~VPa~~a~i~~~d~---I~-------triga~d~i~~g 666 (854)
T PRK05399 598 PNDCDLD-EERRLLLITGPNMAGKSTYMRQVALIVLLAQIGSFVPAESARIGIVDR---IF-------TRIGASDDLASG 666 (854)
T ss_pred ecceeeC-CCCcEEEEECCCCCCcHHHHHHHHHHHHHHhcCCceeccceEecccCe---ee-------eccCcccccccC
Confidence 4455554 456799999999999999999986442 2221122222111 00 001100 00111
Q ss_pred CCcchhHHHHHHHHHhh--CCcEEEEcCC---CCHHHH-----HHHHHHHhc-CCeEEEEEcCcchhHHhhc
Q 019702 183 PEPSLQHKVMIEAVENH--MPEVIIVDEI---GTEAEA-----HACRSIAER-GVMLIGTAHGEWLENIIKN 243 (337)
Q Consensus 183 ~S~g~k~r~~ia~al~~--~P~vlilDEp---~~~ld~-----~~l~~~~~~-G~tvi~t~H~~~~~~~~~d 243 (337)
.|--+.....++.++.. ++.++|+||| |+..|- ..+..+.+. |.+++++||..++. .+++
T Consensus 667 ~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs~~dg~aia~aile~l~~~~~~~~l~aTH~~el~-~l~~ 737 (854)
T PRK05399 667 RSTFMVEMTETANILNNATERSLVLLDEIGRGTSTYDGLSIAWAVAEYLHDKIGAKTLFATHYHELT-ELEE 737 (854)
T ss_pred cccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCCcchhHHHHHHHHHHHHhcCCceEEEEechHHHH-HHhh
Confidence 34445556667777766 8999999999 666663 334555665 58999999996644 3443
No 465
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=98.56 E-value=6.8e-08 Score=93.87 Aligned_cols=197 Identities=20% Similarity=0.305 Sum_probs=101.6
Q ss_pred ccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEcCCcccccCCCCccccccc-chhccCCCcchhHHHHHHHHH
Q 019702 119 LHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGT-ARRMQVPEPSLQHKVMIEAVE 197 (337)
Q Consensus 119 v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~~~~ei~~~~~~~~~~~~~-~~~~~~~S~g~k~r~~ia~al 197 (337)
+.+|++++|.|+||+|||||+..++..+... ++++.|+.......... .....++. .....+.+.. .....+..+.
T Consensus 79 i~~GslvLI~G~pG~GKStLllq~a~~~a~~-g~~VlYvs~EEs~~qi~-~Ra~rlg~~~~~l~l~~e~-~le~I~~~i~ 155 (372)
T cd01121 79 LVPGSVILIGGDPGIGKSTLLLQVAARLAKR-GGKVLYVSGEESPEQIK-LRADRLGISTENLYLLAET-NLEDILASIE 155 (372)
T ss_pred ccCCeEEEEEeCCCCCHHHHHHHHHHHHHhc-CCeEEEEECCcCHHHHH-HHHHHcCCCcccEEEEccC-cHHHHHHHHH
Confidence 6778999999999999999999999877654 56787775321110000 00000000 0001111111 1112233444
Q ss_pred hhCCcEEEEcCCCCH----H--------H----HHHHHHH-HhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecC
Q 019702 198 NHMPEVIIVDEIGTE----A--------E----AHACRSI-AERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGD 260 (337)
Q Consensus 198 ~~~P~vlilDEp~~~----l--------d----~~~l~~~-~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~ 260 (337)
..+|+++++|+...- . . ...+..+ .+.|+++|++.|-.........+++.++. ++-+...++
T Consensus 156 ~~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~lak~~~itvilvghvtk~g~~aG~~~leh~v-D~Vi~le~~ 234 (372)
T cd01121 156 ELKPDLVIIDSIQTVYSSELTSAPGSVSQVRECTAELMRFAKERNIPIFIVGHVTKEGSIAGPKVLEHMV-DTVLYFEGD 234 (372)
T ss_pred hcCCcEEEEcchHHhhccccccCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeccCCCcccCcccchhhc-eEEEEEEcC
Confidence 569999999998432 1 1 1223343 46699999999965432111122333322 233333333
Q ss_pred HHHHHHhhhHHHHhhcCCCchhhhHHhhhCCceeec-------------ChHHHHHHHHcCCCceE-EEeeecC
Q 019702 261 EEARARRCQKSILERKAPPTFYFLIEMRERHYWVTH-------------KTEKSVDMLLRGKTPLV-EIRKRDD 320 (337)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~-------------~~~~~~~~~~~~~~~~~-~~~~~~~ 320 (337)
..+.++ .-+.+..++++......+++.+.|..... ..+.++.+.++|.+|++ |+.+.-.
T Consensus 235 ~~~~~R-~Lri~KnR~g~~~ei~~F~i~~~Gl~~v~~ps~~fl~~~~~~~~g~~~~~~~eg~r~~~~e~qal~~ 307 (372)
T cd01121 235 RHSEYR-ILRSVKNRFGSTNELGVFEMRENGLREVSNPSELFLSEREEDVPGSAVTVVMEGSRPLLVEVQALVS 307 (372)
T ss_pred CCCcEE-EEEEEeCCCCCCCCEEEEEECCCCeEEccChhhheecCCCCCCCccEEEeeccCCcceeeEeehhcc
Confidence 322111 11123345555444455666666644211 12445566677877766 7777643
No 466
>PRK09183 transposase/IS protein; Provisional
Probab=98.55 E-value=2.9e-07 Score=85.30 Aligned_cols=134 Identities=19% Similarity=0.267 Sum_probs=74.9
Q ss_pred hhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEcCCcccccCCCCcccccccchhccCCCcchhHHH
Q 019702 112 IDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKV 191 (337)
Q Consensus 112 ~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~~~~ei~~~~~~~~~~~~~~~~~~~~S~g~k~r~ 191 (337)
+..+++ ++.|+.++|+||||+|||||+.+|+...... +..+.++... ++.. .+.... .. +... .
T Consensus 93 L~~~~~-i~~~~~v~l~Gp~GtGKThLa~al~~~a~~~-G~~v~~~~~~-~l~~-------~l~~a~----~~-~~~~-~ 156 (259)
T PRK09183 93 LRSLSF-IERNENIVLLGPSGVGKTHLAIALGYEAVRA-GIKVRFTTAA-DLLL-------QLSTAQ----RQ-GRYK-T 156 (259)
T ss_pred HhcCCc-hhcCCeEEEEeCCCCCHHHHHHHHHHHHHHc-CCeEEEEeHH-HHHH-------HHHHHH----HC-CcHH-H
Confidence 334444 8889999999999999999999997765443 5566665421 1110 000000 00 1111 1
Q ss_pred HHHHHHhhCCcEEEEcCCCCH----HHH----HHHHHHHhcCCeEEEEEc-Ccch-hHH------hhchHHHHHhcCceE
Q 019702 192 MIEAVENHMPEVIIVDEIGTE----AEA----HACRSIAERGVMLIGTAH-GEWL-ENI------IKNPILSDLIGGVDT 255 (337)
Q Consensus 192 ~ia~al~~~P~vlilDEp~~~----ld~----~~l~~~~~~G~tvi~t~H-~~~~-~~~------~~d~v~~~ll~~G~i 255 (337)
.+.. ....|+++++||.... .+. +.+....+++. +|+||+ ..+. ... ++++++.+++++..+
T Consensus 157 ~~~~-~~~~~dlLiiDdlg~~~~~~~~~~~lf~li~~r~~~~s-~iiTsn~~~~~w~~~~~~d~~~~~ai~dRl~~~~~~ 234 (259)
T PRK09183 157 TLQR-GVMAPRLLIIDEIGYLPFSQEEANLFFQVIAKRYEKGS-MILTSNLPFGQWDQTFAGDAALTSAMLDRLLHHSHV 234 (259)
T ss_pred HHHH-HhcCCCEEEEcccccCCCChHHHHHHHHHHHHHHhcCc-EEEecCCCHHHHHHHhcCchhHHHHHHHHHhcceEE
Confidence 1112 2468999999999652 222 22333334554 455554 3332 222 244677678888887
Q ss_pred EEecCHHH
Q 019702 256 VTLGDEEA 263 (337)
Q Consensus 256 v~~g~~~~ 263 (337)
+.....+.
T Consensus 235 i~~~g~s~ 242 (259)
T PRK09183 235 VQIKGESY 242 (259)
T ss_pred EeecCCCC
Confidence 77655443
No 467
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.52 E-value=1e-06 Score=74.89 Aligned_cols=130 Identities=27% Similarity=0.331 Sum_probs=73.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHHccccccCCCeE-------------------EEEcCCcccccC-CCCcccccccchhccC
Q 019702 123 KSILFVGRPGVGKTTVMREIARVLSDEFQKRV-------------------VIVDTSNEIGGD-GDIPHSAIGTARRMQV 182 (337)
Q Consensus 123 ~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i-------------------~~v~~~~ei~~~-~~~~~~~~~~~~~~~~ 182 (337)
-.++|.|+||+||||++.-|+..+... +.++ ..++...+-... .......++ ++.+
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~~-g~kvgGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvG---kY~V 81 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLREK-GYKVGGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVG---KYGV 81 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHhc-CceeeeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccc---eEEe
Confidence 368999999999999999999888654 1111 111111110000 000000111 1111
Q ss_pred CCcchh--HHHHHHHHHhhCCcEEEEcCCCCHHH-----HHHHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceE
Q 019702 183 PEPSLQ--HKVMIEAVENHMPEVIIVDEIGTEAE-----AHACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDT 255 (337)
Q Consensus 183 ~S~g~k--~r~~ia~al~~~P~vlilDEp~~~ld-----~~~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~i 255 (337)
.-.+.. .--++.+|+.. .|++|+||++..+- .+++.+..+++..+|+|.|-.+- ++++..+-..|.+
T Consensus 82 ~v~~le~i~~~al~rA~~~-aDvIIIDEIGpMElks~~f~~~ve~vl~~~kpliatlHrrsr-----~P~v~~ik~~~~v 155 (179)
T COG1618 82 NVEGLEEIAIPALRRALEE-ADVIIIDEIGPMELKSKKFREAVEEVLKSGKPLIATLHRRSR-----HPLVQRIKKLGGV 155 (179)
T ss_pred eHHHHHHHhHHHHHHHhhc-CCEEEEecccchhhccHHHHHHHHHHhcCCCcEEEEEecccC-----ChHHHHhhhcCCE
Confidence 111111 11234444443 89999999988654 36677778888889999997652 5666555555665
Q ss_pred EEecCHH
Q 019702 256 VTLGDEE 262 (337)
Q Consensus 256 v~~g~~~ 262 (337)
+..-+|+
T Consensus 156 ~v~lt~~ 162 (179)
T COG1618 156 YVFLTPE 162 (179)
T ss_pred EEEEccc
Confidence 5534554
No 468
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=98.51 E-value=2.1e-07 Score=83.38 Aligned_cols=31 Identities=6% Similarity=0.104 Sum_probs=28.0
Q ss_pred hhHHHHHHHHHhhCCcEEEEcCCC-----CHHHHHH
Q 019702 187 LQHKVMIEAVENHMPEVIIVDEIG-----TEAEAHA 217 (337)
Q Consensus 187 ~k~r~~ia~al~~~P~vlilDEp~-----~~ld~~~ 217 (337)
++++..||+++.++|+++++|||| +++|...
T Consensus 157 ~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~ 192 (215)
T PTZ00132 157 EKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPEL 192 (215)
T ss_pred HHHHHHHHHHHhhcccceecCCcccCCCccccCHHH
Confidence 777789999999999999999999 9999644
No 469
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=98.50 E-value=7.6e-08 Score=98.69 Aligned_cols=69 Identities=10% Similarity=0.086 Sum_probs=57.1
Q ss_pred cCCCcchhHHHHHHHHHhhC----CcEEEEcCCCCHHHHH-------HHHHHHhcCCeEEEEEcCcchhHHhhchHHHHH
Q 019702 181 QVPEPSLQHKVMIEAVENHM----PEVIIVDEIGTEAEAH-------ACRSIAERGVMLIGTAHGEWLENIIKNPILSDL 249 (337)
Q Consensus 181 ~~~S~g~k~r~~ia~al~~~----P~vlilDEp~~~ld~~-------~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~l 249 (337)
..+|+|+++|+++|++++.. |++||+|||++++|.. .+..+. ++.+||++||+...+. +||+++ +
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~-~~~~vi~iTH~~~~~~-~ad~~~--~ 514 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLS-ERHQVLCVTHLPQVAA-HADAHF--K 514 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-cCCEEEEEEChHHHHH-hcCeEE--E
Confidence 46799999999999999985 6999999999999943 344444 4899999999998774 899998 7
Q ss_pred hcCc
Q 019702 250 IGGV 253 (337)
Q Consensus 250 l~~G 253 (337)
++++
T Consensus 515 l~k~ 518 (563)
T TIGR00634 515 VEKE 518 (563)
T ss_pred EEEc
Confidence 7653
No 470
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.49 E-value=6.4e-07 Score=73.38 Aligned_cols=103 Identities=24% Similarity=0.383 Sum_probs=61.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEcCCcccccCCCCcccccccchhccCCCcchhHHHHHHHHHhhC
Q 019702 121 YGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHM 200 (337)
Q Consensus 121 ~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~~~~ei~~~~~~~~~~~~~~~~~~~~S~g~k~r~~ia~al~~~ 200 (337)
.+..+.|.||+|+||||+++.++..+... +..+.+++....... .......... .+......+...+
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~-~~~v~~~~~~~~~~~------~~~~~~~~~~------~~~~~~~~~~~~~ 84 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRP-GAPFLYLNASDLLEG------LVVAELFGHF------LVRLLFELAEKAK 84 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhcC-CCCeEEEehhhhhhh------hHHHHHhhhh------hHhHHHHhhccCC
Confidence 37899999999999999999999988533 445555543221110 0000000000 2334455566778
Q ss_pred CcEEEEcCCCCH--HHH----HHHHHHHh-----cCCeEEEEEcCcc
Q 019702 201 PEVIIVDEIGTE--AEA----HACRSIAE-----RGVMLIGTAHGEW 236 (337)
Q Consensus 201 P~vlilDEp~~~--ld~----~~l~~~~~-----~G~tvi~t~H~~~ 236 (337)
|.+|++||.... ... ..+..... .+..+|++++...
T Consensus 85 ~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 85 PGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred CeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 999999999753 122 22233222 4678888888765
No 471
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=98.43 E-value=1.1e-07 Score=76.07 Aligned_cols=33 Identities=24% Similarity=0.309 Sum_probs=30.6
Q ss_pred chhhhhhcccCCCEEEEEcCCCCcHHHHHHHHH
Q 019702 111 HIDMVYDLLHYGKSILFVGRPGVGKTTVMREIA 143 (337)
Q Consensus 111 ~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~ 143 (337)
+++++++.+++|++++|+||+|||||||++++.
T Consensus 4 aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 4 SLHGVLVDVYGKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh
Confidence 377888999999999999999999999999986
No 472
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=98.40 E-value=6.6e-07 Score=81.76 Aligned_cols=109 Identities=17% Similarity=0.205 Sum_probs=56.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHHccc--------cccCCCeEEEEcCCcccccCCCCcccccccchhccCCCcchhHHHHHH
Q 019702 123 KSILFVGRPGVGKTTVMREIARVL--------SDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIE 194 (337)
Q Consensus 123 ~~v~IiGpnGsGKTTLL~~l~gll--------~~~~~~~i~~v~~~~ei~~~~~~~~~~~~~~~~~~~~S~g~k~r~~ia 194 (337)
.++.|.|||.|||||+||.++-.. -|.....+...+ .+....... .. ...-.|.-+.....++
T Consensus 44 ~~~iiTGpN~sGKSt~lk~i~~~~ilaq~G~~VPA~~~~i~~~d---~I~t~~~~~-d~-----~~~~~S~F~~E~~~~~ 114 (235)
T PF00488_consen 44 RIIIITGPNMSGKSTFLKQIGLIVILAQIGCFVPAESAEIPIFD---RIFTRIGDD-DS-----IESGLSTFMAEMKRLS 114 (235)
T ss_dssp SEEEEESSTTSSHHHHHHHHHHHHHHHTTT--BSSSEEEEE--S---EEEEEES----S-----STTSSSHHHHHHHHHH
T ss_pred eEEEEeCCCccchhhHHHHHHHHhhhhhcCceeeeccccccccc---EEEeecccc-cc-----cccccccHHHhHHHHH
Confidence 589999999999999999887543 222111111111 110000000 00 0011222222222334
Q ss_pred HHH--hhCCcEEEEcCCCCHH---H-----HHHHHHHHh-cCCeEEEEEcCcchhHH
Q 019702 195 AVE--NHMPEVIIVDEIGTEA---E-----AHACRSIAE-RGVMLIGTAHGEWLENI 240 (337)
Q Consensus 195 ~al--~~~P~vlilDEp~~~l---d-----~~~l~~~~~-~G~tvi~t~H~~~~~~~ 240 (337)
.++ +.+-.++++||++.+- | ...+..+.+ .+..++++||..+....
T Consensus 115 ~il~~~~~~sLvliDE~g~gT~~~eg~ai~~aile~l~~~~~~~~i~~TH~~~l~~~ 171 (235)
T PF00488_consen 115 SILRNATEKSLVLIDELGRGTNPEEGIAIAIAILEYLLEKSGCFVIIATHFHELAEL 171 (235)
T ss_dssp HHHHH--TTEEEEEESTTTTSSHHHHHHHHHHHHHHHHHTTT-EEEEEES-GGGGGH
T ss_pred hhhhhcccceeeecccccCCCChhHHHHHHHHHHHHHHHhccccEEEEeccchhHHH
Confidence 444 3467799999997643 3 234566676 48899999999986543
No 473
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=98.39 E-value=7.4e-07 Score=88.93 Aligned_cols=111 Identities=22% Similarity=0.338 Sum_probs=66.4
Q ss_pred ccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEcCCccccc------CCCCcccccccchhccCCCcchhHHHH
Q 019702 119 LHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGG------DGDIPHSAIGTARRMQVPEPSLQHKVM 192 (337)
Q Consensus 119 v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~~~~ei~~------~~~~~~~~~~~~~~~~~~S~g~k~r~~ 192 (337)
+.+|++++|.|+||+|||||+..++..+... ++++.|+........ ..++... ...+.+...- ...
T Consensus 91 i~~GsvilI~G~pGsGKTTL~lq~a~~~a~~-g~kvlYvs~EEs~~qi~~ra~rlg~~~~------~l~~~~e~~~-~~I 162 (454)
T TIGR00416 91 IVPGSLILIGGDPGIGKSTLLLQVACQLAKN-QMKVLYVSGEESLQQIKMRAIRLGLPEP------NLYVLSETNW-EQI 162 (454)
T ss_pred ccCCeEEEEEcCCCCCHHHHHHHHHHHHHhc-CCcEEEEECcCCHHHHHHHHHHcCCChH------HeEEcCCCCH-HHH
Confidence 6789999999999999999999998877554 567777753221100 0001110 1111111111 112
Q ss_pred HHHHHhhCCcEEEEcCCCCHH------------HH----HHHHHH-HhcCCeEEEEEcCcch
Q 019702 193 IEAVENHMPEVIIVDEIGTEA------------EA----HACRSI-AERGVMLIGTAHGEWL 237 (337)
Q Consensus 193 ia~al~~~P~vlilDEp~~~l------------d~----~~l~~~-~~~G~tvi~t~H~~~~ 237 (337)
+..+-..+|+++++|...+-. +. ..+..+ ++.|.|+++|+|....
T Consensus 163 ~~~i~~~~~~~vVIDSIq~l~~~~~~~~~g~~~q~r~~~~~L~~~ak~~giTvllt~hvtke 224 (454)
T TIGR00416 163 CANIEEENPQACVIDSIQTLYSPDISSAPGSVSQVRECTAELMRLAKTRGIAIFIVGHVTKE 224 (454)
T ss_pred HHHHHhcCCcEEEEecchhhcccccccCCCCHHHHHHHHHHHHHHHHHhCCEEEEEeccccC
Confidence 333344689999999885421 11 123343 5679999999997653
No 474
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=98.39 E-value=1.7e-06 Score=92.39 Aligned_cols=62 Identities=10% Similarity=0.021 Sum_probs=45.5
Q ss_pred hhCCcEEEEcCCCCHH-HH-------HHHHHHHhcCCeEEEEEcCcchhH---------HhhchHHHHHhcCceEEEecC
Q 019702 198 NHMPEVIIVDEIGTEA-EA-------HACRSIAERGVMLIGTAHGEWLEN---------IIKNPILSDLIGGVDTVTLGD 260 (337)
Q Consensus 198 ~~~P~vlilDEp~~~l-d~-------~~l~~~~~~G~tvi~t~H~~~~~~---------~~~d~v~~~ll~~G~iv~~g~ 260 (337)
..+|.++++|||...+ |. +.++.+++.|.+++++||+.+.+. ..|+..+ ++.++++...+.
T Consensus 650 ~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~~~~vil~Tq~~~d~~~s~~a~~i~~~~~t~i--~L~n~~a~~~~~ 727 (818)
T PRK13830 650 TGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKANCAVVLATQSISDAERSGIIDVLKESCPTKI--CLPNGAAREPGT 727 (818)
T ss_pred CCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhcCchHHHHHhcCCeEE--ECCCccccccch
Confidence 4799999999999998 42 445666778999999999998764 3466555 566666655443
Q ss_pred H
Q 019702 261 E 261 (337)
Q Consensus 261 ~ 261 (337)
.
T Consensus 728 ~ 728 (818)
T PRK13830 728 R 728 (818)
T ss_pred H
Confidence 3
No 475
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=98.38 E-value=2.6e-07 Score=91.31 Aligned_cols=45 Identities=11% Similarity=0.102 Sum_probs=38.0
Q ss_pred cchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEE
Q 019702 110 GHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVI 156 (337)
Q Consensus 110 ~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~ 156 (337)
.+++++++.+.+|++++|+||+||||||||+ +++..|+.++.|.+
T Consensus 20 ~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~l 64 (504)
T TIGR03238 20 RILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFL 64 (504)
T ss_pred HHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEE
Confidence 4588899999999999999999999999999 77777775544543
No 476
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.37 E-value=1.4e-06 Score=87.05 Aligned_cols=45 Identities=29% Similarity=0.389 Sum_probs=35.6
Q ss_pred hhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCC-CeEEEEcCC
Q 019702 116 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ-KRVVIVDTS 160 (337)
Q Consensus 116 ~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~-~~i~~v~~~ 160 (337)
++.+..|++++++||||+||||++..|++.+....+ .+|.++...
T Consensus 250 ~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~D 295 (484)
T PRK06995 250 DALLDRGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTD 295 (484)
T ss_pred cccccCCcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCC
Confidence 344667899999999999999999999998865533 367777543
No 477
>PRK10869 recombination and repair protein; Provisional
Probab=98.36 E-value=3.1e-07 Score=93.80 Aligned_cols=68 Identities=9% Similarity=0.106 Sum_probs=55.4
Q ss_pred cCCCcchhHHHHHHHHHhh----CCcEEEEcCCCCHHHHH-------HHHHHHhcCCeEEEEEcCcchhHHhhchHHHHH
Q 019702 181 QVPEPSLQHKVMIEAVENH----MPEVIIVDEIGTEAEAH-------ACRSIAERGVMLIGTAHGEWLENIIKNPILSDL 249 (337)
Q Consensus 181 ~~~S~g~k~r~~ia~al~~----~P~vlilDEp~~~ld~~-------~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~l 249 (337)
..+|+|+++|++||++++. +|+++|+|||++++|.. .+..+. .+.+||++||+...+ .+||+.+ +
T Consensus 429 k~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~-~~~qvi~iTH~~~~~-~~ad~~~--~ 504 (553)
T PRK10869 429 KVASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLG-ESTQVMCVTHLPQVA-GCGHQHF--F 504 (553)
T ss_pred hhCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-cCCEEEEEecCHHHH-HhCCEEE--E
Confidence 4579999999999999997 58999999999999943 344443 468999999999866 6889877 5
Q ss_pred hcC
Q 019702 250 IGG 252 (337)
Q Consensus 250 l~~ 252 (337)
+.+
T Consensus 505 v~k 507 (553)
T PRK10869 505 VSK 507 (553)
T ss_pred Eec
Confidence 543
No 478
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=98.35 E-value=1.6e-06 Score=86.06 Aligned_cols=146 Identities=16% Similarity=0.164 Sum_probs=85.9
Q ss_pred chhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEcC-CcccccC-------CCCcccccccchhccC
Q 019702 111 HIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDT-SNEIGGD-------GDIPHSAIGTARRMQV 182 (337)
Q Consensus 111 ~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~~-~~ei~~~-------~~~~~~~~~~~~~~~~ 182 (337)
+++.+ +.+.+|+.++|+|+||+|||||+++|+++..++. ..+..+.+ ..++... ..+.+..+ .-....
T Consensus 153 ~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~-~vi~~iG~r~~ev~~~~~~~~~~~~l~~tvv--v~~~~d 228 (440)
T TIGR01026 153 SIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEADV-NVIALIGERGREVREFIEHDLGEEGLKRSVV--VVATSD 228 (440)
T ss_pred eeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCE-EEEEEEeecchHHHHHHHHHhcccccceEEE--EEECCC
Confidence 46666 7789999999999999999999999999987752 23333332 2222110 00000000 001112
Q ss_pred CCcchhHHHHH---HHH--Hh-hCCc-EEEEcCCCCHHH-------------------H-------HHHHHHHhcCC---
Q 019702 183 PEPSLQHKVMI---EAV--EN-HMPE-VIIVDEIGTEAE-------------------A-------HACRSIAERGV--- 226 (337)
Q Consensus 183 ~S~g~k~r~~i---a~a--l~-~~P~-vlilDEp~~~ld-------------------~-------~~l~~~~~~G~--- 226 (337)
.+..++.+.+. +.| ++ +.-+ +|++|-.|.-.+ . +.+..+...+.
T Consensus 229 ~~p~~r~~~~~~a~t~AE~frd~G~~Vll~~DslTr~A~A~REisl~~ge~P~~~Gypp~~~~~l~~l~ERag~~~~GSI 308 (440)
T TIGR01026 229 QSPLLRLKGAYVATAIAEYFRDQGKDVLLLMDSVTRFAMAQREIGLAAGEPPATKGYTPSVFSTLPRLLERAGASGKGSI 308 (440)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEeChHHHHHHHHHHHHhcCCCCcccccChhHHHHHHHHHHHhccCCCCee
Confidence 24555555322 222 21 2234 567777766322 1 22334444455
Q ss_pred ----eEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHH
Q 019702 227 ----MLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEAR 264 (337)
Q Consensus 227 ----tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~ 264 (337)
||++.+||+ .+.+++.+. -+.+|+++...+.++.
T Consensus 309 T~i~tVl~~~~d~--~dpi~d~~~--~i~dG~ivLsr~la~~ 346 (440)
T TIGR01026 309 TAFYTVLVEGDDM--NEPIADSVR--GILDGHIVLSRALAQR 346 (440)
T ss_pred eEEEEEEccCcCC--Ccchhhhhc--cccceEEEEecchhhC
Confidence 777778887 456888888 7888999998777654
No 479
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=98.34 E-value=1.9e-06 Score=74.76 Aligned_cols=43 Identities=21% Similarity=0.354 Sum_probs=28.8
Q ss_pred HHHHHhhCCcEEEEcCCCCHHH-----HHHHHHHHhcCCeEEEEEcCcc
Q 019702 193 IEAVENHMPEVIIVDEIGTEAE-----AHACRSIAERGVMLIGTAHGEW 236 (337)
Q Consensus 193 ia~al~~~P~vlilDEp~~~ld-----~~~l~~~~~~G~tvi~t~H~~~ 236 (337)
+..++ .+++++++||++-.+- .+++..+.+.+..+|.|.|...
T Consensus 89 L~~~~-~~~~liviDEIG~mEl~~~~F~~~v~~~l~s~~~vi~vv~~~~ 136 (168)
T PF03266_consen 89 LRNAL-SSSDLIVIDEIGKMELKSPGFREAVEKLLDSNKPVIGVVHKRS 136 (168)
T ss_dssp CHHHH-HCCHEEEE---STTCCC-CHHHHHHHHHHCTTSEEEEE--SS-
T ss_pred HHhhc-CCCCEEEEeccchhhhcCHHHHHHHHHHHcCCCcEEEEEecCC
Confidence 44444 8999999999988654 4677777788889999999873
No 480
>PRK08181 transposase; Validated
Probab=98.33 E-value=1.5e-06 Score=81.01 Aligned_cols=130 Identities=20% Similarity=0.257 Sum_probs=73.7
Q ss_pred cccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEcCCcccccCCCCcccccccchhccCCCcchhHHHHHHHHH
Q 019702 118 LLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVE 197 (337)
Q Consensus 118 ~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~~~~ei~~~~~~~~~~~~~~~~~~~~S~g~k~r~~ia~al 197 (337)
.++.++.+.|+||+|+|||.|+.+|+...... +..+.++... ++.. .+.. .. ..+... + ....
T Consensus 102 ~~~~~~nlll~Gp~GtGKTHLa~Aia~~a~~~-g~~v~f~~~~-~L~~-------~l~~---a~-~~~~~~-~---~l~~ 164 (269)
T PRK08181 102 WLAKGANLLLFGPPGGGKSHLAAAIGLALIEN-GWRVLFTRTT-DLVQ-------KLQV---AR-RELQLE-S---AIAK 164 (269)
T ss_pred HHhcCceEEEEecCCCcHHHHHHHHHHHHHHc-CCceeeeeHH-HHHH-------HHHH---HH-hCCcHH-H---HHHH
Confidence 36688899999999999999999999876543 5566655431 1110 0000 00 011111 1 1123
Q ss_pred hhCCcEEEEcCCCCH----HH----HHHHHHHHhcCCeEEEEEc-Ccch-hHH-----hhchHHHHHhcCceEEEecCHH
Q 019702 198 NHMPEVIIVDEIGTE----AE----AHACRSIAERGVMLIGTAH-GEWL-ENI-----IKNPILSDLIGGVDTVTLGDEE 262 (337)
Q Consensus 198 ~~~P~vlilDEp~~~----ld----~~~l~~~~~~G~tvi~t~H-~~~~-~~~-----~~d~v~~~ll~~G~iv~~g~~~ 262 (337)
..++++||+||.... .+ .+.+....+++ .+|+||. ..+. ... ++++++.+|++++.++.....+
T Consensus 165 l~~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~-s~IiTSN~~~~~w~~~~~D~~~a~aildRL~h~~~~i~~~g~s 243 (269)
T PRK08181 165 LDKFDLLILDDLAYVTKDQAETSVLFELISARYERR-SILITANQPFGEWNRVFPDPAMTLAAVDRLVHHATIFEMNVES 243 (269)
T ss_pred HhcCCEEEEeccccccCCHHHHHHHHHHHHHHHhCC-CEEEEcCCCHHHHHHhcCCccchhhHHHhhhcCceEEecCCcc
Confidence 468999999999542 22 23333333444 5555554 3332 222 3455666788888887765555
Q ss_pred HHH
Q 019702 263 ARA 265 (337)
Q Consensus 263 ~~~ 265 (337)
...
T Consensus 244 ~R~ 246 (269)
T PRK08181 244 YRR 246 (269)
T ss_pred chh
Confidence 443
No 481
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=98.33 E-value=7e-07 Score=81.59 Aligned_cols=37 Identities=27% Similarity=0.325 Sum_probs=27.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHcc-----------ccccCCCeEEEEc
Q 019702 122 GKSILFVGRPGVGKTTVMREIARV-----------LSDEFQKRVVIVD 158 (337)
Q Consensus 122 g~~v~IiGpnGsGKTTLL~~l~gl-----------l~~~~~~~i~~v~ 158 (337)
|...+|+||+|+|||||+..++-- ..+..+++|.|+.
T Consensus 1 g~~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~ 48 (239)
T cd01125 1 GYVSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLS 48 (239)
T ss_pred CceeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEE
Confidence 567899999999999999988742 1233356787775
No 482
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=98.30 E-value=7e-07 Score=97.66 Aligned_cols=69 Identities=14% Similarity=0.056 Sum_probs=57.5
Q ss_pred hhccCCCcchhHHHHHHHHHhh--------CCcEEEEcCCCCHHHH-------HHHHHHHhcCCeEEEEEcCcchhHHhh
Q 019702 178 RRMQVPEPSLQHKVMIEAVENH--------MPEVIIVDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIK 242 (337)
Q Consensus 178 ~~~~~~S~g~k~r~~ia~al~~--------~P~vlilDEp~~~ld~-------~~l~~~~~~G~tvi~t~H~~~~~~~~~ 242 (337)
+.+..+|||++++++|++||.. +|++||+||||+++|. +.+..+.+.|.+|+++||...+.+.+.
T Consensus 945 r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g~~v~iisH~~~l~~~i~ 1024 (1047)
T PRK10246 945 RDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVEAMKERIP 1024 (1047)
T ss_pred CCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEecHHHHHHhcc
Confidence 4567799999999999999996 8999999999999994 456667778999999999777666655
Q ss_pred chHH
Q 019702 243 NPIL 246 (337)
Q Consensus 243 d~v~ 246 (337)
.++.
T Consensus 1025 ~qi~ 1028 (1047)
T PRK10246 1025 VQIK 1028 (1047)
T ss_pred ceEE
Confidence 5544
No 483
>PHA02562 46 endonuclease subunit; Provisional
Probab=98.30 E-value=4.3e-07 Score=92.93 Aligned_cols=67 Identities=10% Similarity=0.070 Sum_probs=53.1
Q ss_pred ccCCCcchhHHHHHHHHHh----------hCCcEEEEcCCC-CHHHHHH-------HHHHHhcCCeEEEEEcCcchhHHh
Q 019702 180 MQVPEPSLQHKVMIEAVEN----------HMPEVIIVDEIG-TEAEAHA-------CRSIAERGVMLIGTAHGEWLENII 241 (337)
Q Consensus 180 ~~~~S~g~k~r~~ia~al~----------~~P~vlilDEp~-~~ld~~~-------l~~~~~~G~tvi~t~H~~~~~~~~ 241 (337)
+..+|+|+++|++||++++ .+|+++|+|||+ +++|... +..+ .|.+||++||+.... ..
T Consensus 466 ~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~--~~~~iiiish~~~~~-~~ 542 (562)
T PHA02562 466 YASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSL--KDTNVFVISHKDHDP-QK 542 (562)
T ss_pred hhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhC--CCCeEEEEECchhch-hh
Confidence 4568999999999999887 589999999998 6788532 2232 578999999997755 46
Q ss_pred hchHHHHHhc
Q 019702 242 KNPILSDLIG 251 (337)
Q Consensus 242 ~d~v~~~ll~ 251 (337)
+|+++ .+.
T Consensus 543 ~d~~~--~l~ 550 (562)
T PHA02562 543 FDRHL--KME 550 (562)
T ss_pred hhcEE--EEE
Confidence 78887 555
No 484
>PRK04296 thymidine kinase; Provisional
Probab=98.30 E-value=6.4e-06 Score=72.77 Aligned_cols=110 Identities=17% Similarity=0.257 Sum_probs=59.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEcC--CcccccCCCCccccccc-chhccCCCcchhHHHHHHHHHh
Q 019702 122 GKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDT--SNEIGGDGDIPHSAIGT-ARRMQVPEPSLQHKVMIEAVEN 198 (337)
Q Consensus 122 g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~~--~~ei~~~~~~~~~~~~~-~~~~~~~S~g~k~r~~ia~al~ 198 (337)
|.+++++||+||||||++..++-..... +.++.++.. ....... .+. ..++. .......+...-.+ .+.. ..
T Consensus 2 g~i~litG~~GsGKTT~~l~~~~~~~~~-g~~v~i~k~~~d~~~~~~-~i~-~~lg~~~~~~~~~~~~~~~~-~~~~-~~ 76 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQRAYNYEER-GMKVLVFKPAIDDRYGEG-KVV-SRIGLSREAIPVSSDTDIFE-LIEE-EG 76 (190)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHHHHc-CCeEEEEeccccccccCC-cEe-cCCCCcccceEeCChHHHHH-HHHh-hC
Confidence 6789999999999999987777655433 566666622 1111100 000 00000 00000111111100 0111 23
Q ss_pred hCCcEEEEcCCCC--HHHH-HHHHHHHhcCCeEEEEEcCcc
Q 019702 199 HMPEVIIVDEIGT--EAEA-HACRSIAERGVMLIGTAHGEW 236 (337)
Q Consensus 199 ~~P~vlilDEp~~--~ld~-~~l~~~~~~G~tvi~t~H~~~ 236 (337)
.++++|++||..- ..++ +.+..++..|++|+++.++.+
T Consensus 77 ~~~dvviIDEaq~l~~~~v~~l~~~l~~~g~~vi~tgl~~~ 117 (190)
T PRK04296 77 EKIDCVLIDEAQFLDKEQVVQLAEVLDDLGIPVICYGLDTD 117 (190)
T ss_pred CCCCEEEEEccccCCHHHHHHHHHHHHHcCCeEEEEecCcc
Confidence 4789999999944 2223 455566788999999999855
No 485
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.26 E-value=1.1e-06 Score=98.27 Aligned_cols=65 Identities=14% Similarity=0.110 Sum_probs=53.7
Q ss_pred ccCCCcchhH------HHHHHHHHhhCCcEEEEcCCCCHHHHHH-------HHHHH-----hcCCeEEEEEcCcchhHHh
Q 019702 180 MQVPEPSLQH------KVMIEAVENHMPEVIIVDEIGTEAEAHA-------CRSIA-----ERGVMLIGTAHGEWLENII 241 (337)
Q Consensus 180 ~~~~S~g~k~------r~~ia~al~~~P~vlilDEp~~~ld~~~-------l~~~~-----~~G~tvi~t~H~~~~~~~~ 241 (337)
.+.+|+|+++ |++||++++.+|++|+|||||+++|... +..+. ..|.+||++||+.+++..+
T Consensus 1197 ~~~lS~Gq~~~~~~~~rlala~~~~~~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~~~~~~ 1276 (1311)
T TIGR00606 1197 RGRCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDEDFVELL 1276 (1311)
T ss_pred CCCCchhhhhHhhHhHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHHHHHHH
Confidence 3568999999 9999999999999999999999999532 33332 2478999999999998887
Q ss_pred hch
Q 019702 242 KNP 244 (337)
Q Consensus 242 ~d~ 244 (337)
|..
T Consensus 1277 ~~~ 1279 (1311)
T TIGR00606 1277 GRS 1279 (1311)
T ss_pred hhc
Confidence 643
No 486
>PRK03918 chromosome segregation protein; Provisional
Probab=98.25 E-value=7.3e-07 Score=95.97 Aligned_cols=70 Identities=10% Similarity=0.034 Sum_probs=54.6
Q ss_pred hccCCCcchhHH------HHHHHHHhhCCcEEEEcCCCCHHHHH-------HHHHHHhcCCeEEEEEcCcchhHHhhchH
Q 019702 179 RMQVPEPSLQHK------VMIEAVENHMPEVIIVDEIGTEAEAH-------ACRSIAERGVMLIGTAHGEWLENIIKNPI 245 (337)
Q Consensus 179 ~~~~~S~g~k~r------~~ia~al~~~P~vlilDEp~~~ld~~-------~l~~~~~~G~tvi~t~H~~~~~~~~~d~v 245 (337)
.+..+|+|++++ ++++++++.+|+++|+||||+++|.. ++..+...+.+||++||+.++. ..||++
T Consensus 785 ~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~~~~iiiith~~~~~-~~~d~~ 863 (880)
T PRK03918 785 PLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVIIVSHDEELK-DAADYV 863 (880)
T ss_pred ChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHH-HhCCeE
Confidence 456789999995 45556778899999999999999953 3444455678999999999855 579998
Q ss_pred HHHHhc
Q 019702 246 LSDLIG 251 (337)
Q Consensus 246 ~~~ll~ 251 (337)
+ .+.
T Consensus 864 ~--~l~ 867 (880)
T PRK03918 864 I--RVS 867 (880)
T ss_pred E--EEE
Confidence 8 664
No 487
>PRK11823 DNA repair protein RadA; Provisional
Probab=98.23 E-value=4.5e-06 Score=83.22 Aligned_cols=115 Identities=19% Similarity=0.344 Sum_probs=65.6
Q ss_pred ccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEcCCcccccCCCCccccccc-chhccCCCcchhHHHHHHHHH
Q 019702 119 LHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGT-ARRMQVPEPSLQHKVMIEAVE 197 (337)
Q Consensus 119 v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~~~~ei~~~~~~~~~~~~~-~~~~~~~S~g~k~r~~ia~al 197 (337)
+.+|+.++|.|+||+|||||+..++...... +.++.|+........... ....++. .....+.+.. ...-.+....
T Consensus 77 i~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~-g~~vlYvs~Ees~~qi~~-ra~rlg~~~~~l~~~~e~-~l~~i~~~i~ 153 (446)
T PRK11823 77 LVPGSVVLIGGDPGIGKSTLLLQVAARLAAA-GGKVLYVSGEESASQIKL-RAERLGLPSDNLYLLAET-NLEAILATIE 153 (446)
T ss_pred ccCCEEEEEECCCCCCHHHHHHHHHHHHHhc-CCeEEEEEccccHHHHHH-HHHHcCCChhcEEEeCCC-CHHHHHHHHH
Confidence 6678999999999999999999998877533 567777754321100000 0000000 0001111111 1122233334
Q ss_pred hhCCcEEEEcCCCCHHH------------H----HHHHHH-HhcCCeEEEEEcCcc
Q 019702 198 NHMPEVIIVDEIGTEAE------------A----HACRSI-AERGVMLIGTAHGEW 236 (337)
Q Consensus 198 ~~~P~vlilDEp~~~ld------------~----~~l~~~-~~~G~tvi~t~H~~~ 236 (337)
..+|+++++|++++-.. . ..+..+ .+.|.+++++.|-..
T Consensus 154 ~~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~~ak~~~itvilv~hvtk 209 (446)
T PRK11823 154 EEKPDLVVIDSIQTMYSPELESAPGSVSQVRECAAELMRLAKQRGIAVFLVGHVTK 209 (446)
T ss_pred hhCCCEEEEechhhhccccccCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeeccC
Confidence 46899999999864211 1 123333 466999999999654
No 488
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.20 E-value=2.8e-06 Score=84.60 Aligned_cols=124 Identities=14% Similarity=0.226 Sum_probs=75.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcccccc-CCCeEEEEcCCcccccCCCCcccccccchhccCCCcchhHHHHHHHHHhhCCc
Q 019702 124 SILFVGRPGVGKTTVMREIARVLSDE-FQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPE 202 (337)
Q Consensus 124 ~v~IiGpnGsGKTTLL~~l~gll~~~-~~~~i~~v~~~~ei~~~~~~~~~~~~~~~~~~~~S~g~k~r~~ia~al~~~P~ 202 (337)
.+.|.||+|+|||+|+++++..+... .+.++.|+... ++. ...... .. .+.. -.+......+|+
T Consensus 132 ~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~-~f~------~~~~~~---~~--~~~~---~~f~~~~~~~~d 196 (440)
T PRK14088 132 PLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSE-KFL------NDLVDS---MK--EGKL---NEFREKYRKKVD 196 (440)
T ss_pred eEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHH-HHH------HHHHHH---Hh--cccH---HHHHHHHHhcCC
Confidence 68999999999999999999876432 23467766432 110 000000 00 0000 112222335799
Q ss_pred EEEEcCCCCHHH--------HHHHHHHHhcCCeEEEEE-cCcchhHHhhchHHHHHhcCceEEEecCHHH
Q 019702 203 VIIVDEIGTEAE--------AHACRSIAERGVMLIGTA-HGEWLENIIKNPILSDLIGGVDTVTLGDEEA 263 (337)
Q Consensus 203 vlilDEp~~~ld--------~~~l~~~~~~G~tvi~t~-H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~ 263 (337)
+|++|||....+ ...+..+.+.|..+|+++ |+......+.+++..++ ..|-++....|+.
T Consensus 197 vLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~-~~gl~v~i~~pd~ 265 (440)
T PRK14088 197 VLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRF-QMGLVAKLEPPDE 265 (440)
T ss_pred EEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHH-hcCceEeeCCCCH
Confidence 999999975432 234555667777777766 77777767777877654 4566777666653
No 489
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.20 E-value=1.6e-06 Score=84.08 Aligned_cols=48 Identities=29% Similarity=0.431 Sum_probs=36.6
Q ss_pred hhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCC-CeEEEEcC
Q 019702 112 IDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ-KRVVIVDT 159 (337)
Q Consensus 112 ~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~-~~i~~v~~ 159 (337)
++..+..+..|++++++||||+||||++..|+..+....+ .+|.++..
T Consensus 127 ~~~~~~~~~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~ 175 (374)
T PRK14722 127 LDSEDALMERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTT 175 (374)
T ss_pred hcCCCccccCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEec
Confidence 4445566888999999999999999999999987643323 46666643
No 490
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=98.20 E-value=3.6e-07 Score=92.02 Aligned_cols=38 Identities=29% Similarity=0.359 Sum_probs=28.1
Q ss_pred cccCCCEEEEEcCCCCcHHHHHHHH--HccccccCCCeEEEE
Q 019702 118 LLHYGKSILFVGRPGVGKTTVMREI--ARVLSDEFQKRVVIV 157 (337)
Q Consensus 118 ~v~~g~~v~IiGpnGsGKTTLL~~l--~gll~~~~~~~i~~v 157 (337)
=+.+|..++|.||||||||||...+ .|..+. +.++.|+
T Consensus 17 Glp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~--ge~~lyv 56 (484)
T TIGR02655 17 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHF--DEPGVFV 56 (484)
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhC--CCCEEEE
Confidence 3678999999999999999999977 344432 3344444
No 491
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=98.19 E-value=1.3e-05 Score=86.15 Aligned_cols=48 Identities=17% Similarity=0.111 Sum_probs=38.0
Q ss_pred HHHHHhhCCcEEEEcCCCCHHH-H-------HHHHHHHhcCCeEEEEEcCcchhHH
Q 019702 193 IEAVENHMPEVIIVDEIGTEAE-A-------HACRSIAERGVMLIGTAHGEWLENI 240 (337)
Q Consensus 193 ia~al~~~P~vlilDEp~~~ld-~-------~~l~~~~~~G~tvi~t~H~~~~~~~ 240 (337)
+++++..+|+++++|||...++ . +.++.+++.|.+++++||+.+.+..
T Consensus 680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK~g~~vil~TQs~~d~~~ 735 (852)
T PRK13891 680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRKANCLVLMATQSLSDAAN 735 (852)
T ss_pred HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhh
Confidence 4566778999999999999883 2 3455667789999999999987654
No 492
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.19 E-value=4.4e-06 Score=79.69 Aligned_cols=92 Identities=22% Similarity=0.273 Sum_probs=54.6
Q ss_pred cCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEcCCcc-cccCCCCc----ccccccchhccCCCcchhHHHHHH
Q 019702 120 HYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNE-IGGDGDIP----HSAIGTARRMQVPEPSLQHKVMIE 194 (337)
Q Consensus 120 ~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~~~~e-i~~~~~~~----~~~~~~~~~~~~~S~g~k~r~~ia 194 (337)
.+|++++++|||||||||+++.|++.+.+. +++|.+++.... .+...... ...+..........+.....-++.
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~-g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~ 190 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQ-GKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQ 190 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhc-CCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHH
Confidence 457899999999999999999999999865 678887764321 10000000 000000000000111112223456
Q ss_pred HHHhhCCcEEEEcCCCCH
Q 019702 195 AVENHMPEVIIVDEIGTE 212 (337)
Q Consensus 195 ~al~~~P~vlilDEp~~~ 212 (337)
.++..+-|++|+|=|...
T Consensus 191 ~~~~~~~D~ViIDTaGr~ 208 (318)
T PRK10416 191 AAKARGIDVLIIDTAGRL 208 (318)
T ss_pred HHHhCCCCEEEEeCCCCC
Confidence 677788999999999763
No 493
>PRK06526 transposase; Provisional
Probab=98.17 E-value=3.1e-06 Score=78.26 Aligned_cols=128 Identities=19% Similarity=0.271 Sum_probs=69.5
Q ss_pred ccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEcCCcccccCCCCcccccccchhccCCCcchhHHHHHHHHHh
Q 019702 119 LHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVEN 198 (337)
Q Consensus 119 v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~~~~ei~~~~~~~~~~~~~~~~~~~~S~g~k~r~~ia~al~ 198 (337)
++.++.++|+||+|+|||+|+.+|+...... +..+.+... .++. ..+. .. .+.+.-.+ .+. -.
T Consensus 95 i~~~~nlll~Gp~GtGKThLa~al~~~a~~~-g~~v~f~t~-~~l~-------~~l~---~~--~~~~~~~~-~l~--~l 157 (254)
T PRK06526 95 VTGKENVVFLGPPGTGKTHLAIGLGIRACQA-GHRVLFATA-AQWV-------ARLA---AA--HHAGRLQA-ELV--KL 157 (254)
T ss_pred hhcCceEEEEeCCCCchHHHHHHHHHHHHHC-CCchhhhhH-HHHH-------HHHH---HH--HhcCcHHH-HHH--Hh
Confidence 4678899999999999999999998766432 444443221 1110 0000 00 01111111 111 23
Q ss_pred hCCcEEEEcCCCCH----HHHHH----HHHHHhcCCeEEEEEcCc-c-hhHHh-----hchHHHHHhcCceEEEecCHHH
Q 019702 199 HMPEVIIVDEIGTE----AEAHA----CRSIAERGVMLIGTAHGE-W-LENII-----KNPILSDLIGGVDTVTLGDEEA 263 (337)
Q Consensus 199 ~~P~vlilDEp~~~----ld~~~----l~~~~~~G~tvi~t~H~~-~-~~~~~-----~d~v~~~ll~~G~iv~~g~~~~ 263 (337)
.++++||+||+... ...+. +....+.+ .+|+||+.. + +...+ +++++.++++++.++.....+.
T Consensus 158 ~~~dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~-s~IitSn~~~~~w~~~~~d~~~a~ai~dRl~~~~~~i~~~g~s~ 236 (254)
T PRK06526 158 GRYPLLIVDEVGYIPFEPEAANLFFQLVSSRYERA-SLIVTSNKPFGRWGEVFGDDVVAAAMIDRLVHHAEVISLKGDSY 236 (254)
T ss_pred ccCCEEEEcccccCCCCHHHHHHHHHHHHHHHhcC-CEEEEcCCCHHHHHHHcCChHHHHHHHHHHhcCceEEeecCCCc
Confidence 57999999999652 12222 32223344 566666543 2 22233 3445666888888777655543
Q ss_pred H
Q 019702 264 R 264 (337)
Q Consensus 264 ~ 264 (337)
.
T Consensus 237 R 237 (254)
T PRK06526 237 R 237 (254)
T ss_pred c
Confidence 3
No 494
>PF09818 ABC_ATPase: Predicted ATPase of the ABC class; InterPro: IPR019195 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry consists of various predicted ABC transporter class ATPases.
Probab=98.16 E-value=1.3e-05 Score=78.24 Aligned_cols=133 Identities=17% Similarity=0.184 Sum_probs=87.4
Q ss_pred ccCCCEEEEEcCCCCcHHHHHHHHHcccccc---CCCe-EEEEcCCcc--------ccc------CCCCcccccccchhc
Q 019702 119 LHYGKSILFVGRPGVGKTTVMREIARVLSDE---FQKR-VVIVDTSNE--------IGG------DGDIPHSAIGTARRM 180 (337)
Q Consensus 119 v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~---~~~~-i~~v~~~~e--------i~~------~~~~~~~~~~~~~~~ 180 (337)
+++| +++|+|.+=-||||||++|..=.-+. .++. |++...-.. +.. ...+|...-...-..
T Consensus 242 Ip~G-vTlIvGGGyHGKSTLL~Ale~GVYnHipGDGRE~VVT~~~avkirAEDGR~V~~vDISpFI~~LP~g~dT~~FsT 320 (448)
T PF09818_consen 242 IPKG-VTLIVGGGYHGKSTLLEALERGVYNHIPGDGREFVVTDPDAVKIRAEDGRSVEGVDISPFINNLPGGKDTTCFST 320 (448)
T ss_pred eCCc-EEEEECCCCccHHHHHHHHHhcccCCCCCCCceEEEECCCceEEEecCCceEeCccchHHHhhCCCCCCCCcccc
Confidence 5666 99999999999999999996543222 1222 222221111 111 011121110001123
Q ss_pred cCCCcchhHHHHHHHHHhhCCcEEEEcCCCCHHH----------------------HHHHHHHH-hcCCeEEEEEcCcch
Q 019702 181 QVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAE----------------------AHACRSIA-ERGVMLIGTAHGEWL 237 (337)
Q Consensus 181 ~~~S~g~k~r~~ia~al~~~P~vlilDEp~~~ld----------------------~~~l~~~~-~~G~tvi~t~H~~~~ 237 (337)
..-||.+.|-..|.-|+-...++|++||=|+.-. .+.+..+. +.|++.|+++-....
T Consensus 321 ~~ASGSTSqAAnI~EAlE~Ga~~LLiDEDtsATNfmiRD~rMq~Lv~k~kEPITPfidrvr~l~~~~GvStIlV~Ggsgd 400 (448)
T PF09818_consen 321 ENASGSTSQAANIMEALEAGARLLLIDEDTSATNFMIRDERMQALVSKEKEPITPFIDRVRSLYEKLGVSTILVVGGSGD 400 (448)
T ss_pred cCCCchHHHHHHHHHHHHcCCCEEEEcCcccchheeehhHHHHHhhccCCCCcchHHHHHHHHHHHcCceEEEEeccchh
Confidence 4459999999999999999999999999998532 23455664 569988888877777
Q ss_pred hHHhhchHHHHHhcCce
Q 019702 238 ENIIKNPILSDLIGGVD 254 (337)
Q Consensus 238 ~~~~~d~v~~~ll~~G~ 254 (337)
.-..+|+|+ +|++=+
T Consensus 401 y~~vAD~Vi--~Md~Y~ 415 (448)
T PF09818_consen 401 YFDVADRVI--MMDEYR 415 (448)
T ss_pred hHhhCCEEE--EecCcc
Confidence 778999999 887644
No 495
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=98.13 E-value=7.9e-06 Score=80.26 Aligned_cols=119 Identities=17% Similarity=0.271 Sum_probs=68.7
Q ss_pred ccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEcCCcccccCCCCcccccccchhccCCCcchhHHHHHHHHHh
Q 019702 119 LHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVEN 198 (337)
Q Consensus 119 v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~~~~ei~~~~~~~~~~~~~~~~~~~~S~g~k~r~~ia~al~ 198 (337)
+.++..++|.|||||||||+++++++..... ...+.. .++ .... ...+...-+-.+..|..
T Consensus 176 l~~pkgvLL~GppGTGKT~LAkalA~~l~~~----fi~i~~-s~l------~~k~--------~ge~~~~lr~lf~~A~~ 236 (398)
T PTZ00454 176 IDPPRGVLLYGPPGTGKTMLAKAVAHHTTAT----FIRVVG-SEF------VQKY--------LGEGPRMVRDVFRLARE 236 (398)
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHhcCCC----EEEEeh-HHH------HHHh--------cchhHHHHHHHHHHHHh
Confidence 3456789999999999999999999976432 221111 111 0000 01112233445677778
Q ss_pred hCCcEEEEcCCCC----------HHHH-------HHHHHHH----hcCCeEEEEEcCcchhHHhhchHHHHHhcCce---
Q 019702 199 HMPEVIIVDEIGT----------EAEA-------HACRSIA----ERGVMLIGTAHGEWLENIIKNPILSDLIGGVD--- 254 (337)
Q Consensus 199 ~~P~vlilDEp~~----------~ld~-------~~l~~~~----~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~--- 254 (337)
..|.||++||+.+ +.|. +.+..+. ..++.||++||..+.++ +. ++..|+
T Consensus 237 ~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~LD----pA---llR~GRfd~ 309 (398)
T PTZ00454 237 NAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLD----PA---LLRPGRLDR 309 (398)
T ss_pred cCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhCC----HH---HcCCCcccE
Confidence 8999999999643 1221 1222221 13577999999876443 22 334343
Q ss_pred EEEecCHHH
Q 019702 255 TVTLGDEEA 263 (337)
Q Consensus 255 iv~~g~~~~ 263 (337)
.+....|..
T Consensus 310 ~I~~~~P~~ 318 (398)
T PTZ00454 310 KIEFPLPDR 318 (398)
T ss_pred EEEeCCcCH
Confidence 466666653
No 496
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=98.13 E-value=5.1e-06 Score=75.16 Aligned_cols=39 Identities=31% Similarity=0.368 Sum_probs=29.5
Q ss_pred cccCCCEEEEEcCCCCcHHHHHHHHHc-cccccCCCeEEEEc
Q 019702 118 LLHYGKSILFVGRPGVGKTTVMREIAR-VLSDEFQKRVVIVD 158 (337)
Q Consensus 118 ~v~~g~~v~IiGpnGsGKTTLL~~l~g-ll~~~~~~~i~~v~ 158 (337)
-+++|++++|.|+||||||||+..++. .+.+ +..+.++.
T Consensus 16 Gi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~--g~~~~~is 55 (229)
T TIGR03881 16 GIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRD--GDPVIYVT 55 (229)
T ss_pred CCcCCeEEEEECCCCCChHHHHHHHHHHHHhc--CCeEEEEE
Confidence 478899999999999999999987652 3333 45666654
No 497
>PRK06893 DNA replication initiation factor; Validated
Probab=98.12 E-value=1.3e-05 Score=72.93 Aligned_cols=114 Identities=13% Similarity=0.124 Sum_probs=64.7
Q ss_pred CEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEcCCcccccCCCCcccccccchhccCCCcchhHHHHHHHHHhhCCc
Q 019702 123 KSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPE 202 (337)
Q Consensus 123 ~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~~~~ei~~~~~~~~~~~~~~~~~~~~S~g~k~r~~ia~al~~~P~ 202 (337)
-++.|.||+|+|||+|+++++...... +..+.|+.-.. . . .. .. + .+ ....+++
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~-~~~~~y~~~~~-~---------~--------~~--~~--~-~~--~~~~~~d 93 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLN-QRTAIYIPLSK-S---------Q--------YF--SP--A-VL--ENLEQQD 93 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc-CCCeEEeeHHH-h---------h--------hh--hH--H-HH--hhcccCC
Confidence 467899999999999999999876443 34444443210 0 0 00 00 0 01 1134789
Q ss_pred EEEEcCCCCHH---H-----HHHHHHHHhcCCeEEEEEcCcchhHH--hhchHHHHHhcCceEEEecCHHH
Q 019702 203 VIIVDEIGTEA---E-----AHACRSIAERGVMLIGTAHGEWLENI--IKNPILSDLIGGVDTVTLGDEEA 263 (337)
Q Consensus 203 vlilDEp~~~l---d-----~~~l~~~~~~G~tvi~t~H~~~~~~~--~~d~v~~~ll~~G~iv~~g~~~~ 263 (337)
+|++||+.... + ...+....+.|.+++++|++....+. .-.++.. -+..|.++....|++
T Consensus 94 lLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~s-Rl~~g~~~~l~~pd~ 163 (229)
T PRK06893 94 LVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLAS-RLTWGEIYQLNDLTD 163 (229)
T ss_pred EEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHH-HHhcCCeeeCCCCCH
Confidence 99999997631 1 23355556677777666665532211 1123332 234566776666653
No 498
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.11 E-value=5.7e-06 Score=73.48 Aligned_cols=28 Identities=25% Similarity=0.443 Sum_probs=26.2
Q ss_pred cCCCEEEEEcCCCCcHHHHHHHHHcccc
Q 019702 120 HYGKSILFVGRPGVGKTTVMREIARVLS 147 (337)
Q Consensus 120 ~~g~~v~IiGpnGsGKTTLL~~l~gll~ 147 (337)
++|++++|+||+|||||||++.|++.++
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 5799999999999999999999999874
No 499
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.11 E-value=3.9e-06 Score=92.91 Aligned_cols=122 Identities=20% Similarity=0.255 Sum_probs=67.4
Q ss_pred cccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEcC-----CcccccCCC-Cccc-ccccchh--ccCC-Ccch
Q 019702 118 LLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDT-----SNEIGGDGD-IPHS-AIGTARR--MQVP-EPSL 187 (337)
Q Consensus 118 ~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~~-----~~ei~~~~~-~~~~-~~~~~~~--~~~~-S~g~ 187 (337)
....+++++|+|++|+|||||++++.+.+.....+.+. ++. ..+...... .... ....... ...+ ..+.
T Consensus 203 ~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vf-v~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~ 281 (1153)
T PLN03210 203 ESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVF-IDRAFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDI 281 (1153)
T ss_pred ccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEE-eeccccccchhhcccccccccchhHHHHHHHHHHHhCCCCc
Confidence 34567899999999999999999998877655444443 321 010000000 0000 0000000 0000 0000
Q ss_pred h--HHHHHHHHHhhCCcEEEEcCCCCHHHHHHHHHHH---hcCCeEEEEEcCcchhHH
Q 019702 188 Q--HKVMIEAVENHMPEVIIVDEIGTEAEAHACRSIA---ERGVMLIGTAHGEWLENI 240 (337)
Q Consensus 188 k--~r~~ia~al~~~P~vlilDEp~~~ld~~~l~~~~---~~G~tvi~t~H~~~~~~~ 240 (337)
+ ....+...+...+-+|+||+.......+.+.... ..|.+||+|||+...+..
T Consensus 282 ~~~~~~~~~~~L~~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTTrd~~vl~~ 339 (1153)
T PLN03210 282 KIYHLGAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKDKHFLRA 339 (1153)
T ss_pred ccCCHHHHHHHHhCCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEeCcHHHHHh
Confidence 0 0112334455677789999998876667666543 358899999999876543
No 500
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=98.07 E-value=3.7e-06 Score=60.40 Aligned_cols=33 Identities=30% Similarity=0.411 Sum_probs=27.0
Q ss_pred hcccC-CCEEEEEcCCCCcHHHHHHHHHcccccc
Q 019702 117 DLLHY-GKSILFVGRPGVGKTTVMREIARVLSDE 149 (337)
Q Consensus 117 ~~v~~-g~~v~IiGpnGsGKTTLL~~l~gll~~~ 149 (337)
+.+.+ |..++|+|||||||||++-+|.=++-+.
T Consensus 17 ~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~~~ 50 (62)
T PF13555_consen 17 IDFDPRGDVTLITGPNGSGKSTLLDAIQTVLYGN 50 (62)
T ss_pred EeecCCCcEEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 44544 5699999999999999999998887654
Done!