Query 019702
Match_columns 337
No_of_seqs 396 out of 4162
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 05:50:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019702.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019702hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gfo_A Cobalt import ATP-bindi 100.0 4.8E-34 1.7E-38 264.9 10.3 168 97-267 10-234 (275)
2 3rlf_A Maltose/maltodextrin im 100.0 8E-34 2.7E-38 273.6 11.6 168 97-268 6-225 (381)
3 3fvq_A Fe(3+) IONS import ATP- 100.0 1.4E-33 4.7E-38 270.2 11.7 168 97-268 7-230 (359)
4 3tui_C Methionine import ATP-b 100.0 9.7E-34 3.3E-38 271.5 9.8 170 97-268 27-255 (366)
5 4g1u_C Hemin import ATP-bindin 100.0 3.1E-33 1.1E-37 258.4 10.4 166 97-267 14-238 (266)
6 2yyz_A Sugar ABC transporter, 100.0 8.9E-33 3E-37 265.0 12.4 168 97-268 6-225 (359)
7 2olj_A Amino acid ABC transpor 100.0 9.8E-33 3.4E-37 254.6 11.2 166 97-267 27-249 (263)
8 1vpl_A ABC transporter, ATP-bi 100.0 1.1E-32 3.8E-37 253.3 10.7 166 97-266 18-235 (256)
9 1v43_A Sugar-binding transport 100.0 1.5E-32 5.3E-37 264.5 11.8 168 97-268 14-233 (372)
10 2it1_A 362AA long hypothetical 100.0 1.2E-32 4.2E-37 264.3 11.0 168 97-268 6-225 (362)
11 1z47_A CYSA, putative ABC-tran 100.0 8.9E-33 3E-37 264.5 9.9 168 97-268 17-237 (355)
12 1ji0_A ABC transporter; ATP bi 100.0 2.2E-32 7.5E-37 249.1 11.1 166 97-266 9-228 (240)
13 1b0u_A Histidine permease; ABC 100.0 2.5E-32 8.6E-37 251.8 11.3 166 97-267 9-243 (262)
14 1g29_1 MALK, maltose transport 100.0 4E-32 1.4E-36 261.8 12.0 167 97-268 6-231 (372)
15 1oxx_K GLCV, glucose, ABC tran 100.0 2.9E-32 1E-36 261.2 10.9 170 97-268 6-232 (353)
16 3tif_A Uncharacterized ABC tra 100.0 1.5E-32 5.1E-37 249.4 7.6 165 97-264 4-232 (235)
17 1g6h_A High-affinity branched- 100.0 3.5E-32 1.2E-36 250.1 9.6 163 97-263 10-239 (257)
18 2pcj_A ABC transporter, lipopr 100.0 2.2E-32 7.4E-37 246.6 7.9 159 97-260 7-222 (224)
19 3d31_A Sulfate/molybdate ABC t 100.0 2.5E-32 8.4E-37 261.0 8.1 166 97-268 4-219 (348)
20 2nq2_C Hypothetical ABC transp 100.0 1.2E-31 4.2E-36 246.0 11.8 165 97-266 7-217 (253)
21 2onk_A Molybdate/tungstate ABC 100.0 8.6E-32 2.9E-36 245.2 9.5 163 97-267 4-217 (240)
22 3jvv_A Twitching mobility prot 100.0 7.9E-30 2.7E-34 244.7 20.8 215 26-252 13-245 (356)
23 2ihy_A ABC transporter, ATP-bi 100.0 1.5E-31 5.3E-36 248.6 7.7 165 97-266 24-252 (279)
24 2ff7_A Alpha-hemolysin translo 100.0 4.1E-31 1.4E-35 241.7 9.6 165 97-267 10-233 (247)
25 2yz2_A Putative ABC transporte 100.0 6.9E-31 2.4E-35 242.7 11.0 169 97-267 5-228 (266)
26 1mv5_A LMRA, multidrug resista 100.0 6.5E-31 2.2E-35 239.7 9.1 164 97-267 4-227 (243)
27 2ixe_A Antigen peptide transpo 100.0 6.3E-31 2.2E-35 243.6 8.1 168 97-267 19-246 (271)
28 2pze_A Cystic fibrosis transme 100.0 2.1E-30 7.3E-35 234.3 11.3 167 97-266 9-218 (229)
29 2cbz_A Multidrug resistance-as 100.0 2E-30 7E-35 235.6 10.8 168 97-267 6-218 (237)
30 3nh6_A ATP-binding cassette SU 100.0 6.4E-31 2.2E-35 247.2 7.6 166 97-267 56-278 (306)
31 2d2e_A SUFC protein; ABC-ATPas 100.0 9.1E-31 3.1E-35 239.7 6.6 162 97-263 6-230 (250)
32 2qi9_C Vitamin B12 import ATP- 100.0 2.9E-30 9.8E-35 236.3 9.0 161 97-266 7-222 (249)
33 2zu0_C Probable ATP-dependent 100.0 3E-30 1E-34 238.5 8.5 166 97-266 23-254 (267)
34 2ghi_A Transport protein; mult 100.0 5.3E-30 1.8E-34 236.0 9.1 166 97-267 20-243 (260)
35 3gd7_A Fusion complex of cysti 100.0 5.1E-30 1.7E-34 248.4 6.3 167 97-268 22-244 (390)
36 2pjz_A Hypothetical protein ST 100.0 8.5E-30 2.9E-34 234.9 7.3 162 97-266 4-215 (263)
37 1sgw_A Putative ABC transporte 100.0 1.6E-29 5.3E-34 226.4 7.6 150 97-251 13-207 (214)
38 2bbs_A Cystic fibrosis transme 99.9 4.2E-28 1.4E-32 226.6 11.8 163 97-266 43-247 (290)
39 3b5x_A Lipid A export ATP-bind 99.9 9.8E-28 3.3E-32 244.2 13.0 167 97-267 344-568 (582)
40 4a82_A Cystic fibrosis transme 99.9 2.8E-28 9.5E-33 248.0 8.3 166 97-267 342-565 (578)
41 3qf4_A ABC transporter, ATP-bi 99.9 2.6E-28 8.8E-33 248.7 7.6 167 97-267 344-567 (587)
42 3qf4_B Uncharacterized ABC tra 99.9 6.6E-28 2.2E-32 246.2 8.3 166 97-267 357-579 (598)
43 3b60_A Lipid A export ATP-bind 99.9 9.9E-28 3.4E-32 244.2 9.2 167 97-267 344-568 (582)
44 2yl4_A ATP-binding cassette SU 99.9 2E-27 7E-32 242.4 6.8 166 97-266 344-570 (595)
45 1yqt_A RNAse L inhibitor; ATP- 99.9 5E-27 1.7E-31 236.7 9.0 166 97-267 290-494 (538)
46 3bk7_A ABC transporter ATP-bin 99.9 6.2E-27 2.1E-31 238.8 9.0 166 97-267 360-564 (607)
47 3j16_B RLI1P; ribosome recycli 99.9 4.8E-27 1.6E-31 239.4 7.0 166 100-268 352-561 (608)
48 3ozx_A RNAse L inhibitor; ATP 99.9 2.3E-26 8E-31 231.6 9.0 165 97-266 272-477 (538)
49 2pt7_A CAG-ALFA; ATPase, prote 99.9 1.3E-24 4.5E-29 206.5 19.5 223 15-254 32-291 (330)
50 1yqt_A RNAse L inhibitor; ATP- 99.9 1.3E-25 4.6E-30 226.3 9.5 151 99-253 26-234 (538)
51 3bk7_A ABC transporter ATP-bin 99.9 4.1E-25 1.4E-29 225.3 10.0 152 98-253 95-304 (607)
52 3g5u_A MCG1178, multidrug resi 99.9 3.1E-25 1.1E-29 243.3 8.9 167 97-267 1033-1259(1284)
53 3ux8_A Excinuclease ABC, A sub 99.9 1.2E-24 4E-29 224.9 12.2 85 180-267 200-299 (670)
54 4f4c_A Multidrug resistance pr 99.9 3.2E-25 1.1E-29 243.8 8.0 168 97-267 1079-1305(1321)
55 2ewv_A Twitching motility prot 99.9 5.7E-24 2E-28 205.2 15.9 211 26-246 25-254 (372)
56 3g5u_A MCG1178, multidrug resi 99.9 4.3E-25 1.5E-29 242.1 7.8 166 97-267 390-614 (1284)
57 4f4c_A Multidrug resistance pr 99.9 1.6E-24 5.6E-29 238.1 9.1 167 97-267 418-642 (1321)
58 2iw3_A Elongation factor 3A; a 99.9 5.4E-24 1.8E-28 225.2 12.5 164 99-266 440-635 (986)
59 3j16_B RLI1P; ribosome recycli 99.9 4.6E-24 1.6E-28 217.4 7.9 151 99-254 82-298 (608)
60 2iw3_A Elongation factor 3A; a 99.9 1.5E-24 5E-29 229.5 3.9 79 180-260 899-981 (986)
61 3ux8_A Excinuclease ABC, A sub 99.9 1.5E-23 5E-28 216.7 9.6 84 180-266 541-640 (670)
62 3ozx_A RNAse L inhibitor; ATP 99.9 9.1E-24 3.1E-28 212.7 7.1 148 99-253 4-213 (538)
63 3pih_A Uvrabc system protein A 99.9 1E-21 3.4E-26 207.4 10.8 85 180-267 803-903 (916)
64 4gp7_A Metallophosphoesterase; 99.8 5.1E-23 1.8E-27 177.3 -2.9 127 114-241 1-165 (171)
65 2vf7_A UVRA2, excinuclease ABC 99.8 2.8E-21 9.7E-26 202.4 6.8 85 180-267 728-828 (842)
66 2eyu_A Twitching motility prot 99.8 7.4E-20 2.5E-24 168.3 13.7 128 111-246 16-143 (261)
67 2npi_A Protein CLP1; CLP1-PCF1 99.8 1.3E-20 4.3E-25 186.4 8.5 150 113-266 129-338 (460)
68 2r6f_A Excinuclease ABC subuni 99.8 2.7E-20 9.1E-25 195.9 9.7 85 180-267 843-943 (972)
69 2ygr_A Uvrabc system protein A 99.8 4.4E-20 1.5E-24 194.9 11.3 85 180-267 861-961 (993)
70 2oap_1 GSPE-2, type II secreti 99.8 6.7E-19 2.3E-23 176.2 18.9 210 20-239 136-371 (511)
71 4aby_A DNA repair protein RECN 99.8 7.7E-20 2.6E-24 177.9 6.1 72 183-258 296-380 (415)
72 3qf7_A RAD50; ABC-ATPase, ATPa 99.8 1.3E-19 4.6E-24 174.2 7.2 74 181-257 278-364 (365)
73 2gza_A Type IV secretion syste 99.8 1.6E-17 5.5E-22 159.5 19.7 221 20-253 30-302 (361)
74 3b85_A Phosphate starvation-in 99.7 9.5E-20 3.3E-24 162.1 0.2 116 119-239 19-162 (208)
75 1ye8_A Protein THEP1, hypothet 99.7 2.2E-18 7.6E-23 149.5 7.6 128 124-257 2-159 (178)
76 1p9r_A General secretion pathw 99.7 5.5E-17 1.9E-21 158.4 16.7 199 26-238 47-274 (418)
77 1tq4_A IIGP1, interferon-induc 99.6 1.7E-17 5.9E-22 161.6 0.7 143 111-254 38-255 (413)
78 3thx_A DNA mismatch repair pro 99.6 1.5E-16 5E-21 168.7 7.5 141 111-263 651-810 (934)
79 1tf7_A KAIC; homohexamer, hexa 99.6 1.1E-16 3.8E-21 160.8 5.4 135 116-254 275-444 (525)
80 2o8b_B DNA mismatch repair pro 99.6 6.7E-17 2.3E-21 173.1 3.7 154 100-263 761-939 (1022)
81 1cr0_A DNA primase/helicase; R 99.6 6.8E-16 2.3E-20 143.5 10.0 142 111-255 24-237 (296)
82 2ehv_A Hypothetical protein PH 99.6 2.1E-16 7.1E-21 142.2 6.1 130 118-251 26-206 (251)
83 3b9q_A Chloroplast SRP recepto 99.6 2.4E-16 8.2E-21 147.8 4.1 117 113-234 91-256 (302)
84 1e69_A Chromosome segregation 99.6 1.9E-15 6.6E-20 142.6 10.2 79 181-263 218-310 (322)
85 2v9p_A Replication protein E1; 99.6 5.7E-18 1.9E-22 158.7 -10.1 142 97-264 104-264 (305)
86 4a74_A DNA repair and recombin 99.6 3.1E-15 1.1E-19 132.8 7.3 134 117-252 20-199 (231)
87 2og2_A Putative signal recogni 99.6 1.4E-15 4.7E-20 145.7 5.3 116 114-234 149-313 (359)
88 2w0m_A SSO2452; RECA, SSPF, un 99.6 3.4E-15 1.2E-19 132.4 7.6 139 111-252 11-191 (235)
89 1znw_A Guanylate kinase, GMP k 99.6 3.3E-17 1.1E-21 144.8 -6.4 54 196-251 137-202 (207)
90 3thx_B DNA mismatch repair pro 99.5 3.6E-15 1.2E-19 157.7 5.4 127 111-245 662-805 (918)
91 3qkt_A DNA double-strand break 99.5 1.3E-14 4.4E-19 137.9 8.3 68 181-251 247-327 (339)
92 2obl_A ESCN; ATPase, hydrolase 99.5 1.4E-15 4.9E-20 145.1 0.1 152 97-265 48-254 (347)
93 1ewq_A DNA mismatch repair pro 99.5 1.4E-14 4.8E-19 150.9 7.3 122 111-239 568-702 (765)
94 2dpy_A FLII, flagellum-specifi 99.5 1.5E-15 5.1E-20 149.2 -1.4 153 97-266 134-344 (438)
95 3aez_A Pantothenate kinase; tr 99.5 7E-16 2.4E-20 145.2 -5.3 127 119-246 87-240 (312)
96 1tf7_A KAIC; homohexamer, hexa 99.5 6.2E-14 2.1E-18 140.7 8.3 140 110-252 26-209 (525)
97 1wb9_A DNA mismatch repair pro 99.5 3.6E-14 1.2E-18 148.6 6.0 141 111-258 597-750 (800)
98 1z6g_A Guanylate kinase; struc 99.4 1.7E-15 5.8E-20 135.2 -4.4 132 111-246 12-205 (218)
99 3sop_A Neuronal-specific septi 99.4 1.9E-14 6.6E-19 132.7 1.1 109 124-236 4-151 (270)
100 2cvh_A DNA repair and recombin 99.4 2.3E-13 8E-18 119.9 8.1 134 112-251 9-183 (220)
101 1pzn_A RAD51, DNA repair and r 99.4 3.2E-13 1.1E-17 128.9 8.6 128 112-239 120-290 (349)
102 2i3b_A HCR-ntpase, human cance 99.4 2E-14 6.8E-19 125.8 -0.2 131 122-259 1-169 (189)
103 2jeo_A Uridine-cytidine kinase 99.4 2.7E-14 9.3E-19 129.3 -1.1 142 111-266 14-187 (245)
104 3pih_A Uvrabc system protein A 99.4 2.5E-13 8.5E-18 143.6 5.6 86 179-267 461-561 (916)
105 3ec2_A DNA replication protein 99.4 4.4E-13 1.5E-17 115.2 5.2 104 118-237 34-145 (180)
106 1nlf_A Regulatory protein REPA 99.3 1.4E-12 4.9E-17 120.1 8.1 119 118-239 26-185 (279)
107 2kjq_A DNAA-related protein; s 99.3 1.8E-12 6E-17 109.0 7.3 84 121-235 35-125 (149)
108 1f2t_B RAD50 ABC-ATPase; DNA d 99.3 7.1E-13 2.4E-17 111.4 4.9 69 179-250 54-135 (148)
109 1rj9_A FTSY, signal recognitio 99.3 3.8E-12 1.3E-16 119.3 8.1 116 121-237 101-260 (304)
110 2ygr_A Uvrabc system protein A 99.3 1.4E-12 4.7E-17 138.0 5.1 85 180-267 519-618 (993)
111 1n0w_A DNA repair protein RAD5 99.3 3.1E-12 1E-16 114.4 6.5 122 118-239 20-178 (243)
112 2r6f_A Excinuclease ABC subuni 99.3 1.1E-12 3.6E-17 138.5 3.6 84 180-266 502-600 (972)
113 1s96_A Guanylate kinase, GMP k 99.2 4.2E-11 1.4E-15 106.9 11.9 133 117-267 11-161 (219)
114 2vf7_A UVRA2, excinuclease ABC 99.2 3.2E-12 1.1E-16 134.1 3.4 85 179-266 376-475 (842)
115 2qnr_A Septin-2, protein NEDD5 99.2 7.7E-13 2.7E-17 123.7 -2.0 126 99-236 3-168 (301)
116 3szr_A Interferon-induced GTP- 99.2 7.2E-13 2.5E-17 135.3 -4.8 154 97-251 13-212 (608)
117 1lw7_A Transcriptional regulat 99.1 1.7E-11 5.9E-16 117.4 2.0 134 112-246 158-339 (365)
118 1pui_A ENGB, probable GTP-bind 99.0 6.6E-11 2.3E-15 103.2 3.3 113 97-214 6-182 (210)
119 2qag_C Septin-7; cell cycle, c 99.0 2.5E-11 8.4E-16 118.4 0.4 131 97-237 14-179 (418)
120 3asz_A Uridine kinase; cytidin 99.0 5.3E-13 1.8E-17 117.4 -10.7 113 119-235 3-161 (211)
121 4ad8_A DNA repair protein RECN 99.0 1.6E-10 5.6E-15 115.6 4.8 65 184-252 399-472 (517)
122 1htw_A HI0065; nucleotide-bind 99.0 4.5E-11 1.5E-15 101.4 -0.8 48 99-149 12-59 (158)
123 3lda_A DNA repair protein RAD5 99.0 9.4E-10 3.2E-14 106.7 8.3 118 118-236 174-329 (400)
124 2bdt_A BH3686; alpha-beta prot 98.9 4.8E-12 1.7E-16 109.4 -7.8 44 217-264 138-182 (189)
125 3e70_C DPA, signal recognition 98.9 1.9E-09 6.7E-14 101.8 8.4 117 119-236 126-280 (328)
126 2o5v_A DNA replication and rep 98.9 3.3E-10 1.1E-14 108.4 2.5 76 183-264 266-354 (359)
127 1vma_A Cell division protein F 98.9 6.3E-10 2.1E-14 104.2 4.2 93 116-211 98-197 (306)
128 2px0_A Flagellar biosynthesis 98.9 1.7E-09 5.8E-14 100.8 6.6 131 120-258 103-247 (296)
129 2dr3_A UPF0273 protein PH0284; 98.9 4.1E-09 1.4E-13 94.0 8.5 47 112-159 12-59 (247)
130 2zr9_A Protein RECA, recombina 98.8 5.9E-09 2E-13 99.3 8.1 113 118-236 57-199 (349)
131 1ls1_A Signal recognition part 98.8 3.2E-09 1.1E-13 98.8 5.8 101 114-219 92-200 (295)
132 3kta_B Chromosome segregation 98.7 4.1E-09 1.4E-13 90.6 3.2 66 179-246 61-137 (173)
133 1sxj_E Activator 1 40 kDa subu 98.7 1.6E-08 5.4E-13 95.4 6.5 38 112-149 23-64 (354)
134 1udx_A The GTP-binding protein 98.6 3.2E-08 1.1E-12 96.3 6.7 138 111-249 146-323 (416)
135 2yhs_A FTSY, cell division pro 98.6 1.8E-08 6.2E-13 99.6 4.9 45 113-158 284-328 (503)
136 2r6a_A DNAB helicase, replicat 98.6 2.9E-08 9.9E-13 97.7 5.6 47 112-158 193-239 (454)
137 2qm8_A GTPase/ATPase; G protei 98.6 5.5E-09 1.9E-13 99.0 -0.5 57 99-158 34-90 (337)
138 2ce7_A Cell division protein F 98.6 9.9E-08 3.4E-12 94.4 8.2 96 124-238 51-167 (476)
139 1ni3_A YCHF GTPase, YCHF GTP-b 98.5 3.2E-09 1.1E-13 102.6 -3.1 59 200-261 139-208 (392)
140 1nij_A Hypothetical protein YJ 98.5 1.3E-08 4.3E-13 95.7 0.8 54 183-241 142-195 (318)
141 3lnc_A Guanylate kinase, GMP k 98.5 3.1E-08 1.1E-12 88.2 2.5 36 112-147 17-53 (231)
142 3tr0_A Guanylate kinase, GMP k 98.5 5E-08 1.7E-12 84.6 3.7 31 117-147 2-32 (205)
143 3hr8_A Protein RECA; alpha and 98.5 4.1E-07 1.4E-11 86.7 10.2 112 118-235 57-198 (356)
144 1w1w_A Structural maintenance 98.5 5.3E-08 1.8E-12 95.0 3.8 66 180-246 331-407 (430)
145 3auy_A DNA double-strand break 98.5 5.6E-08 1.9E-12 93.1 3.8 69 180-251 278-359 (371)
146 3k1j_A LON protease, ATP-depen 98.5 1.2E-07 4E-12 96.6 5.9 40 111-150 49-88 (604)
147 3euj_A Chromosome partition pr 98.5 6.8E-08 2.3E-12 95.6 3.7 39 111-150 19-57 (483)
148 3c8u_A Fructokinase; YP_612366 98.4 8.7E-08 3E-12 84.0 3.8 40 119-159 19-58 (208)
149 1odf_A YGR205W, hypothetical 3 98.4 3E-09 1E-13 98.8 -6.3 96 120-215 29-167 (290)
150 2rcn_A Probable GTPase ENGC; Y 98.4 1.5E-07 5E-12 89.8 5.0 37 112-149 206-243 (358)
151 1sq5_A Pantothenate kinase; P- 98.4 1.3E-07 4.3E-12 88.4 4.4 56 97-157 40-116 (308)
152 2b8t_A Thymidine kinase; deoxy 98.4 8.9E-07 3E-11 79.0 9.3 110 120-237 10-128 (223)
153 2qag_B Septin-6, protein NEDD5 98.4 8.2E-08 2.8E-12 93.5 2.8 43 101-146 22-66 (427)
154 2xau_A PRE-mRNA-splicing facto 98.4 1.2E-07 4E-12 99.3 4.1 129 113-241 100-258 (773)
155 3nwj_A ATSK2; P loop, shikimat 98.4 1E-07 3.4E-12 86.7 2.5 49 97-147 20-73 (250)
156 2x8a_A Nuclear valosin-contain 98.4 3.9E-07 1.3E-11 83.7 6.5 124 112-263 36-180 (274)
157 1zu4_A FTSY; GTPase, signal re 98.4 3.1E-07 1E-11 86.4 5.9 99 113-212 96-203 (320)
158 3b9p_A CG5977-PA, isoform A; A 98.4 2.1E-06 7.3E-11 78.8 11.3 72 121-211 53-124 (297)
159 3uie_A Adenylyl-sulfate kinase 98.4 2.5E-07 8.5E-12 80.5 4.4 47 99-147 4-50 (200)
160 1fnn_A CDC6P, cell division co 98.3 1.2E-06 4.2E-11 82.9 9.1 119 124-247 46-181 (389)
161 2z4s_A Chromosomal replication 98.3 1.7E-07 6E-12 91.8 2.2 125 122-262 130-264 (440)
162 1zp6_A Hypothetical protein AT 98.3 3.6E-07 1.2E-11 78.3 3.6 27 119-145 6-32 (191)
163 3a00_A Guanylate kinase, GMP k 98.3 3.5E-07 1.2E-11 78.7 3.3 28 122-149 1-28 (186)
164 1ixz_A ATP-dependent metallopr 98.3 9.9E-07 3.4E-11 79.4 6.4 34 112-147 41-74 (254)
165 1lvg_A Guanylate kinase, GMP k 98.3 2.7E-07 9.4E-12 80.4 2.6 28 120-147 2-29 (198)
166 3kl4_A SRP54, signal recogniti 98.3 5.4E-07 1.8E-11 88.0 4.8 89 121-211 96-190 (433)
167 4a1f_A DNAB helicase, replicat 98.2 2.8E-06 9.4E-11 80.4 9.0 117 112-233 36-164 (338)
168 2j41_A Guanylate kinase; GMP, 98.2 6E-07 2.1E-11 77.7 3.9 32 118-149 2-33 (207)
169 2r8r_A Sensor protein; KDPD, P 98.2 2.6E-06 8.7E-11 76.0 8.0 110 121-235 4-127 (228)
170 3cf0_A Transitional endoplasmi 98.2 4.1E-06 1.4E-10 77.6 8.9 100 119-237 46-166 (301)
171 2qby_A CDC6 homolog 1, cell di 98.2 6.2E-07 2.1E-11 84.6 3.2 132 122-260 45-196 (386)
172 2ius_A DNA translocase FTSK; n 98.2 1.3E-06 4.6E-11 86.8 5.8 31 114-144 159-189 (512)
173 1kgd_A CASK, peripheral plasma 98.2 8.6E-07 2.9E-11 75.9 3.7 28 121-148 4-31 (180)
174 3kta_A Chromosome segregation 98.2 1.2E-06 4.2E-11 74.5 4.3 36 113-149 18-53 (182)
175 3h4m_A Proteasome-activating n 98.1 6.2E-06 2.1E-10 75.1 9.1 73 120-211 49-121 (285)
176 1v5w_A DMC1, meiotic recombina 98.1 1.1E-05 3.6E-10 76.5 10.8 120 118-237 118-276 (343)
177 2w58_A DNAI, primosome compone 98.1 1.3E-06 4.6E-11 75.6 4.1 34 123-157 55-88 (202)
178 2z43_A DNA repair and recombin 98.1 8E-06 2.7E-10 76.6 9.3 120 118-237 103-260 (324)
179 3bos_A Putative DNA replicatio 98.1 5.7E-06 2E-10 72.7 7.9 89 121-235 51-148 (242)
180 1iy2_A ATP-dependent metallopr 98.1 2.5E-06 8.6E-11 77.9 5.6 34 112-147 65-98 (278)
181 1u94_A RECA protein, recombina 98.1 6.2E-06 2.1E-10 78.6 8.5 112 119-236 60-201 (356)
182 3vaa_A Shikimate kinase, SK; s 98.1 1.2E-06 4.3E-11 76.0 3.3 37 111-147 14-50 (199)
183 1lv7_A FTSH; alpha/beta domain 98.1 1.9E-05 6.6E-10 70.9 11.3 68 123-209 46-113 (257)
184 2orw_A Thymidine kinase; TMTK, 98.1 1.1E-05 3.8E-10 69.5 9.2 108 121-236 2-114 (184)
185 4fcw_A Chaperone protein CLPB; 98.1 3.2E-06 1.1E-10 77.9 5.5 35 123-158 48-82 (311)
186 4eun_A Thermoresistant glucoki 98.1 1.7E-06 5.9E-11 75.1 3.3 28 119-146 26-53 (200)
187 3tau_A Guanylate kinase, GMP k 98.0 2.3E-06 7.7E-11 75.0 3.9 29 120-148 6-34 (208)
188 1u0l_A Probable GTPase ENGC; p 98.0 1.8E-06 6.1E-11 80.3 3.3 36 119-155 166-201 (301)
189 3bh0_A DNAB-like replicative h 98.0 1.6E-05 5.5E-10 74.3 9.7 118 112-234 58-190 (315)
190 1ypw_A Transitional endoplasmi 98.0 6.2E-06 2.1E-10 86.7 7.5 101 119-238 235-353 (806)
191 3m6a_A ATP-dependent protease 98.0 1.8E-06 6.1E-11 86.8 3.2 37 112-149 99-135 (543)
192 1l8q_A Chromosomal replication 98.0 2.5E-06 8.6E-11 79.5 3.8 120 122-259 37-165 (324)
193 1rz3_A Hypothetical protein rb 98.0 3.5E-06 1.2E-10 73.3 4.1 38 119-157 19-56 (201)
194 2bbw_A Adenylate kinase 4, AK4 98.0 3.1E-06 1.1E-10 75.9 3.8 29 121-149 26-57 (246)
195 3io5_A Recombination and repai 98.0 3.6E-05 1.2E-09 72.0 10.7 113 119-236 26-173 (333)
196 2qz4_A Paraplegin; AAA+, SPG7, 98.0 3.2E-05 1.1E-09 69.2 10.0 72 121-211 38-109 (262)
197 3tqc_A Pantothenate kinase; bi 97.9 5.9E-06 2E-10 77.6 4.8 58 100-159 66-130 (321)
198 1in4_A RUVB, holliday junction 97.9 6.9E-07 2.4E-11 84.2 -1.7 46 99-146 23-75 (334)
199 1xwi_A SKD1 protein; VPS4B, AA 97.9 5.3E-05 1.8E-09 70.9 11.3 73 121-211 44-116 (322)
200 1kag_A SKI, shikimate kinase I 97.9 3.7E-06 1.3E-10 70.7 3.0 28 121-148 3-30 (173)
201 1xx6_A Thymidine kinase; NESG, 97.9 3.2E-05 1.1E-09 67.2 8.9 111 120-237 6-120 (191)
202 4b4t_K 26S protease regulatory 97.9 1.7E-05 5.8E-10 77.3 7.7 100 120-238 204-324 (428)
203 1qhl_A Protein (cell division 97.9 3.1E-07 1.1E-11 82.2 -4.3 32 118-150 24-55 (227)
204 1svm_A Large T antigen; AAA+ f 97.9 4.9E-06 1.7E-10 79.9 3.7 36 111-146 158-193 (377)
205 1t9h_A YLOQ, probable GTPase E 97.9 2.1E-06 7.2E-11 80.2 1.1 33 117-149 168-200 (307)
206 2vp4_A Deoxynucleoside kinase; 97.9 5.7E-06 1.9E-10 73.6 3.8 37 118-159 16-52 (230)
207 1knq_A Gluconate kinase; ALFA/ 97.9 4.7E-06 1.6E-10 70.4 3.0 27 120-146 6-32 (175)
208 4e22_A Cytidylate kinase; P-lo 97.9 6E-06 2.1E-10 74.6 3.8 33 117-149 22-57 (252)
209 4b4t_I 26S protease regulatory 97.9 3.2E-05 1.1E-09 75.1 8.8 119 119-263 213-355 (437)
210 3cr8_A Sulfate adenylyltranfer 97.9 5.8E-06 2E-10 83.2 3.5 42 118-159 365-406 (552)
211 2yv5_A YJEQ protein; hydrolase 97.8 9.2E-06 3.1E-10 75.5 4.2 30 119-149 162-191 (302)
212 2o5v_A DNA replication and rep 97.8 9.2E-06 3.2E-10 77.4 4.3 43 97-144 6-48 (359)
213 2f1r_A Molybdopterin-guanine d 97.8 5.2E-06 1.8E-10 70.9 2.2 27 123-149 3-29 (171)
214 1xp8_A RECA protein, recombina 97.8 7.9E-05 2.7E-09 71.2 10.2 113 118-236 70-212 (366)
215 3d8b_A Fidgetin-like protein 1 97.8 4.7E-05 1.6E-09 72.2 8.4 70 121-209 116-185 (357)
216 2p67_A LAO/AO transport system 97.8 1.3E-05 4.5E-10 75.7 4.5 46 112-158 46-91 (341)
217 4b4t_J 26S protease regulatory 97.8 2.8E-05 9.6E-10 75.0 6.7 119 119-263 179-321 (405)
218 4b4t_L 26S protease subunit RP 97.8 3.5E-05 1.2E-09 75.2 7.2 119 119-263 212-354 (437)
219 4b4t_M 26S protease regulatory 97.8 3.5E-05 1.2E-09 75.2 7.0 119 119-263 212-354 (434)
220 3ney_A 55 kDa erythrocyte memb 97.8 1.4E-05 4.7E-10 69.9 3.7 29 119-147 16-44 (197)
221 1jbk_A CLPB protein; beta barr 97.8 7.4E-05 2.5E-09 62.6 8.3 28 121-148 42-69 (195)
222 1w4r_A Thymidine kinase; type 97.8 0.00011 3.8E-09 63.9 9.3 109 121-240 19-132 (195)
223 2wji_A Ferrous iron transport 97.7 0.0002 6.9E-09 59.5 10.7 24 124-147 5-28 (165)
224 2dy1_A Elongation factor G; tr 97.7 8.9E-05 3E-09 76.2 9.9 125 117-246 4-146 (665)
225 2dhr_A FTSH; AAA+ protein, hex 97.7 1.1E-05 3.6E-10 80.3 2.9 33 113-147 57-89 (499)
226 2zan_A Vacuolar protein sortin 97.7 9.8E-05 3.4E-09 72.2 9.8 73 121-211 166-238 (444)
227 1njg_A DNA polymerase III subu 97.7 0.00011 3.8E-09 63.7 9.1 37 112-148 32-71 (250)
228 2qt1_A Nicotinamide riboside k 97.7 1.7E-05 5.8E-10 68.9 3.6 31 117-147 16-46 (207)
229 2e87_A Hypothetical protein PH 97.7 6.6E-05 2.3E-09 71.2 8.0 111 122-238 167-295 (357)
230 3t34_A Dynamin-related protein 97.7 0.00014 4.8E-09 68.9 10.1 31 112-145 27-57 (360)
231 2qp9_X Vacuolar protein sortin 97.7 6.5E-05 2.2E-09 71.2 7.7 72 121-211 83-154 (355)
232 3syl_A Protein CBBX; photosynt 97.7 0.00017 5.8E-09 66.2 10.3 28 121-148 66-93 (309)
233 2pez_A Bifunctional 3'-phospho 97.7 2.3E-05 7.7E-10 66.5 4.0 38 120-158 3-40 (179)
234 1d2n_A N-ethylmaleimide-sensit 97.7 5.3E-05 1.8E-09 68.6 6.7 71 121-209 63-133 (272)
235 3dm5_A SRP54, signal recogniti 97.7 0.00014 4.9E-09 71.0 10.1 88 122-211 100-193 (443)
236 3eie_A Vacuolar protein sortin 97.7 4.2E-05 1.4E-09 71.4 6.0 71 122-211 51-121 (322)
237 3vfd_A Spastin; ATPase, microt 97.7 0.00018 6.1E-09 68.9 10.3 71 121-210 147-217 (389)
238 4b4t_H 26S protease regulatory 97.7 5.8E-05 2E-09 73.9 6.8 119 119-263 240-382 (467)
239 2v1u_A Cell division control p 97.7 3E-05 1E-09 73.0 4.6 29 120-148 42-70 (387)
240 3t15_A Ribulose bisphosphate c 97.6 5.4E-05 1.9E-09 69.8 6.1 26 122-147 36-61 (293)
241 2www_A Methylmalonic aciduria 97.6 3.3E-05 1.1E-09 73.3 4.4 36 122-158 74-109 (349)
242 2j9r_A Thymidine kinase; TK1, 97.6 0.00011 3.7E-09 64.9 7.4 113 120-239 26-142 (214)
243 1w1w_A Structural maintenance 97.6 2.6E-05 9E-10 75.8 3.7 31 119-149 23-53 (430)
244 2r62_A Cell division protease 97.6 2E-05 6.7E-10 71.2 2.7 69 123-210 45-113 (268)
245 2yvu_A Probable adenylyl-sulfa 97.6 3.4E-05 1.2E-09 65.8 4.0 40 118-158 9-48 (186)
246 1j8m_F SRP54, signal recogniti 97.6 4.4E-05 1.5E-09 70.9 4.9 44 115-160 92-135 (297)
247 2qgz_A Helicase loader, putati 97.6 4E-05 1.4E-09 71.4 4.3 36 122-158 152-188 (308)
248 2i1q_A DNA repair and recombin 97.6 0.00012 4.1E-09 68.2 7.5 28 118-145 94-121 (322)
249 1m7g_A Adenylylsulfate kinase; 97.6 3.1E-05 1.1E-09 67.6 3.3 42 117-158 20-61 (211)
250 2q6t_A DNAB replication FORK h 97.6 0.00032 1.1E-08 68.5 10.9 118 112-233 190-318 (444)
251 4eaq_A DTMP kinase, thymidylat 97.6 5.8E-05 2E-09 67.2 4.9 44 112-157 13-59 (229)
252 1cke_A CK, MSSA, protein (cyti 97.5 3.6E-05 1.2E-09 67.5 3.3 25 122-146 5-29 (227)
253 2p65_A Hypothetical protein PF 97.5 7.8E-05 2.7E-09 62.4 5.2 27 122-148 43-69 (187)
254 1sxj_D Activator 1 41 kDa subu 97.5 0.00021 7.3E-09 66.6 8.7 36 112-147 46-83 (353)
255 2chg_A Replication factor C sm 97.5 0.00042 1.4E-08 59.3 9.7 36 112-147 26-63 (226)
256 2zts_A Putative uncharacterize 97.5 0.00026 8.8E-09 62.5 8.4 39 118-158 26-66 (251)
257 1jjv_A Dephospho-COA kinase; P 97.5 4.8E-05 1.6E-09 65.9 3.4 21 124-144 4-24 (206)
258 3cmw_A Protein RECA, recombina 97.5 0.00037 1.3E-08 78.0 10.9 112 119-236 729-870 (1706)
259 1oix_A RAS-related protein RAB 97.5 5.6E-05 1.9E-09 64.7 3.5 25 124-148 31-55 (191)
260 2qor_A Guanylate kinase; phosp 97.5 5.1E-05 1.7E-09 65.9 3.1 29 119-147 9-37 (204)
261 2vhj_A Ntpase P4, P4; non- hyd 97.5 0.00015 5.1E-09 68.0 6.4 28 118-145 119-146 (331)
262 3n70_A Transport activator; si 97.5 0.00045 1.5E-08 56.5 8.6 30 119-148 21-50 (145)
263 3ice_A Transcription terminati 97.5 4.8E-05 1.6E-09 73.0 3.0 51 97-148 136-200 (422)
264 1sxj_C Activator 1 40 kDa subu 97.4 3.9E-05 1.3E-09 72.0 2.2 38 112-149 34-73 (340)
265 3hu3_A Transitional endoplasmi 97.4 0.00035 1.2E-08 69.2 9.0 71 120-209 236-306 (489)
266 1y63_A LMAJ004144AAA protein; 97.4 8.2E-05 2.8E-09 63.5 3.9 32 114-145 2-33 (184)
267 3e2i_A Thymidine kinase; Zn-bi 97.4 0.00044 1.5E-08 61.0 8.5 108 120-240 26-143 (219)
268 3pvs_A Replication-associated 97.4 0.00019 6.4E-09 70.4 6.7 36 113-148 39-76 (447)
269 1f2t_A RAD50 ABC-ATPase; DNA d 97.4 7.9E-05 2.7E-09 61.8 3.5 24 123-146 24-47 (149)
270 2if2_A Dephospho-COA kinase; a 97.4 7.2E-05 2.5E-09 64.5 3.3 21 124-144 3-23 (204)
271 3cmw_A Protein RECA, recombina 97.4 0.00053 1.8E-08 76.7 10.8 112 119-236 380-521 (1706)
272 2f9l_A RAB11B, member RAS onco 97.3 9.6E-05 3.3E-09 63.4 3.3 24 124-147 7-30 (199)
273 1np6_A Molybdopterin-guanine d 97.3 0.00013 4.5E-09 62.3 4.1 34 123-157 7-40 (174)
274 3cmu_A Protein RECA, recombina 97.3 0.00046 1.6E-08 78.2 9.3 113 119-236 1424-1565(2050)
275 1ypw_A Transitional endoplasmi 97.3 7.8E-05 2.7E-09 78.3 2.9 74 118-210 507-580 (806)
276 3cm0_A Adenylate kinase; ATP-b 97.3 0.00011 3.9E-09 62.2 3.1 27 120-146 2-28 (186)
277 3lxx_A GTPase IMAP family memb 97.3 0.00059 2E-08 60.4 7.7 25 124-148 31-55 (239)
278 3cf2_A TER ATPase, transitiona 97.3 0.00018 6.3E-09 75.1 5.0 72 121-211 237-308 (806)
279 2ffh_A Protein (FFH); SRP54, s 97.3 0.00015 5E-09 70.6 4.0 43 114-159 92-134 (425)
280 3bgw_A DNAB-like replicative h 97.3 0.0013 4.6E-08 64.2 10.9 117 112-233 187-318 (444)
281 2ga8_A Hypothetical 39.9 kDa p 97.3 0.00011 3.9E-09 69.6 3.0 37 111-147 11-49 (359)
282 3kb2_A SPBC2 prophage-derived 97.2 0.00013 4.4E-09 60.7 3.0 24 124-147 3-26 (173)
283 2qby_B CDC6 homolog 3, cell di 97.2 0.00026 8.8E-09 66.8 5.4 26 122-147 45-70 (384)
284 3t61_A Gluconokinase; PSI-biol 97.2 0.00011 3.9E-09 63.3 2.6 25 122-146 18-42 (202)
285 3co5_A Putative two-component 97.2 0.00037 1.3E-08 57.0 5.6 28 119-146 24-51 (143)
286 1qhx_A CPT, protein (chloramph 97.2 0.00017 5.7E-09 60.7 3.5 26 122-147 3-28 (178)
287 4dcu_A GTP-binding protein ENG 97.2 0.00069 2.3E-08 66.3 8.4 113 124-238 25-144 (456)
288 2orv_A Thymidine kinase; TP4A 97.2 0.0019 6.6E-08 57.5 10.5 107 120-236 17-127 (234)
289 2c9o_A RUVB-like 1; hexameric 97.2 0.00023 7.8E-09 69.7 4.8 73 120-210 61-136 (456)
290 1xjc_A MOBB protein homolog; s 97.2 0.00025 8.5E-09 60.3 4.0 35 123-158 5-39 (169)
291 1sxj_B Activator 1 37 kDa subu 97.2 0.0011 3.8E-08 60.6 8.7 36 112-147 30-67 (323)
292 3lxw_A GTPase IMAP family memb 97.2 0.0011 3.8E-08 59.3 8.4 23 124-146 23-45 (247)
293 2gj8_A MNME, tRNA modification 97.2 0.0002 6.9E-09 60.1 3.3 26 121-146 3-28 (172)
294 3cmu_A Protein RECA, recombina 97.1 0.0012 4.2E-08 74.8 10.1 112 119-236 380-521 (2050)
295 1kht_A Adenylate kinase; phosp 97.1 0.00025 8.7E-09 60.0 3.6 26 122-147 3-28 (192)
296 2v3c_C SRP54, signal recogniti 97.1 0.00042 1.4E-08 67.6 5.5 37 123-160 100-136 (432)
297 1jr3_A DNA polymerase III subu 97.1 0.0012 3.9E-08 62.0 8.5 37 112-148 25-64 (373)
298 4ag6_A VIRB4 ATPase, type IV s 97.1 0.00029 1E-08 67.4 4.4 40 121-161 34-73 (392)
299 1q57_A DNA primase/helicase; d 97.1 0.0023 8E-08 63.2 11.0 47 112-158 232-278 (503)
300 3pfi_A Holliday junction ATP-d 97.1 0.0022 7.4E-08 59.6 10.2 25 123-147 56-80 (338)
301 2rhm_A Putative kinase; P-loop 97.1 0.00025 8.5E-09 60.2 3.4 27 120-146 3-29 (193)
302 1qvr_A CLPB protein; coiled co 97.1 0.001 3.5E-08 70.2 8.7 35 123-158 589-623 (854)
303 3lw7_A Adenylate kinase relate 97.1 0.00024 8.4E-09 58.8 3.2 19 124-142 3-21 (179)
304 3pxg_A Negative regulator of g 97.1 0.00084 2.9E-08 66.0 7.2 118 121-262 200-326 (468)
305 3qks_A DNA double-strand break 97.1 0.0003 1E-08 61.3 3.5 24 123-146 24-47 (203)
306 1ly1_A Polynucleotide kinase; 97.0 0.00032 1.1E-08 58.7 3.4 22 123-144 3-24 (181)
307 2v54_A DTMP kinase, thymidylat 97.0 0.00038 1.3E-08 59.7 3.9 26 121-146 3-28 (204)
308 2jaq_A Deoxyguanosine kinase; 97.0 0.0003 1E-08 60.2 3.1 24 124-147 2-25 (205)
309 3pxi_A Negative regulator of g 97.0 0.0019 6.4E-08 67.2 9.7 91 124-234 523-629 (758)
310 1hqc_A RUVB; extended AAA-ATPa 97.0 0.0031 1.1E-07 58.0 10.1 25 122-146 38-62 (324)
311 1um8_A ATP-dependent CLP prote 97.0 0.0036 1.2E-07 59.3 10.7 26 121-146 71-96 (376)
312 3e1s_A Exodeoxyribonuclease V, 97.0 0.0011 3.7E-08 66.9 7.5 36 121-157 203-238 (574)
313 2p5t_B PEZT; postsegregational 97.0 0.00023 7.8E-09 64.1 2.2 28 120-147 30-57 (253)
314 1q3t_A Cytidylate kinase; nucl 97.0 0.00039 1.3E-08 61.7 3.6 29 118-146 12-40 (236)
315 3iij_A Coilin-interacting nucl 97.0 0.00035 1.2E-08 59.0 3.1 27 120-146 9-35 (180)
316 1ega_A Protein (GTP-binding pr 97.0 0.00029 9.9E-09 65.2 2.9 26 121-146 7-32 (301)
317 1via_A Shikimate kinase; struc 97.0 0.00031 1.1E-08 59.0 2.8 24 124-147 6-29 (175)
318 2plr_A DTMP kinase, probable t 97.0 0.00035 1.2E-08 60.1 3.1 28 121-148 3-30 (213)
319 2ze6_A Isopentenyl transferase 97.0 0.00033 1.1E-08 63.1 3.1 24 124-147 3-26 (253)
320 1gtv_A TMK, thymidylate kinase 97.0 0.00017 5.8E-09 62.4 1.0 33 124-157 2-34 (214)
321 1nks_A Adenylate kinase; therm 97.0 0.00053 1.8E-08 57.9 4.1 34 124-158 3-36 (194)
322 3u61_B DNA polymerase accessor 97.0 0.0028 9.5E-08 58.5 9.3 117 113-262 36-166 (324)
323 1ojl_A Transcriptional regulat 97.0 0.0015 5E-08 60.5 7.4 29 119-147 22-50 (304)
324 3trf_A Shikimate kinase, SK; a 97.0 0.00045 1.5E-08 58.4 3.6 26 122-147 5-30 (185)
325 2bwj_A Adenylate kinase 5; pho 96.9 0.00033 1.1E-08 59.7 2.7 30 118-147 8-37 (199)
326 2c95_A Adenylate kinase 1; tra 96.9 0.00046 1.6E-08 58.7 3.6 28 119-146 6-33 (196)
327 1sxj_A Activator 1 95 kDa subu 96.9 0.0011 3.9E-08 65.8 6.7 33 122-158 77-109 (516)
328 2wwf_A Thymidilate kinase, put 96.9 0.00055 1.9E-08 59.0 3.8 29 120-148 8-36 (212)
329 1tev_A UMP-CMP kinase; ploop, 96.9 0.00049 1.7E-08 58.2 3.3 25 122-146 3-27 (196)
330 4ad8_A DNA repair protein RECN 96.9 0.0002 6.9E-09 71.3 0.8 34 112-146 51-84 (517)
331 1vht_A Dephospho-COA kinase; s 96.9 0.00053 1.8E-08 59.8 3.4 23 122-144 4-26 (218)
332 2wjg_A FEOB, ferrous iron tran 96.9 0.00055 1.9E-08 57.5 3.4 22 124-145 9-30 (188)
333 2z0h_A DTMP kinase, thymidylat 96.9 0.00078 2.7E-08 57.3 4.3 33 124-157 2-34 (197)
334 1r6b_X CLPA protein; AAA+, N-t 96.9 0.0025 8.5E-08 66.2 8.9 23 124-146 490-512 (758)
335 1nn5_A Similar to deoxythymidy 96.9 0.00062 2.1E-08 58.8 3.7 29 120-148 7-35 (215)
336 2zej_A Dardarin, leucine-rich 96.8 0.00051 1.7E-08 58.0 2.8 23 124-146 4-26 (184)
337 1a5t_A Delta prime, HOLB; zinc 96.8 0.0091 3.1E-07 55.7 11.7 36 113-148 12-50 (334)
338 3r20_A Cytidylate kinase; stru 96.8 0.00053 1.8E-08 61.3 3.0 25 122-146 9-33 (233)
339 1aky_A Adenylate kinase; ATP:A 96.8 0.00062 2.1E-08 59.5 3.4 27 121-147 3-29 (220)
340 2vli_A Antibiotic resistance p 96.8 0.00045 1.5E-08 58.2 2.3 27 121-147 4-30 (183)
341 1gvn_B Zeta; postsegregational 96.8 0.00058 2E-08 62.8 3.2 26 121-146 32-57 (287)
342 1qvr_A CLPB protein; coiled co 96.8 0.0026 8.7E-08 67.1 8.5 27 122-148 191-217 (854)
343 3a8t_A Adenylate isopentenyltr 96.8 0.0049 1.7E-07 58.0 9.2 27 121-147 39-65 (339)
344 1uf9_A TT1252 protein; P-loop, 96.8 0.00075 2.6E-08 57.7 3.4 24 122-145 8-31 (203)
345 2cdn_A Adenylate kinase; phosp 96.7 0.00088 3E-08 57.6 3.8 26 121-146 19-44 (201)
346 1zd8_A GTP:AMP phosphotransfer 96.7 0.00081 2.8E-08 59.1 3.5 26 121-146 6-31 (227)
347 3ake_A Cytidylate kinase; CMP 96.7 0.00077 2.6E-08 57.8 3.0 24 124-147 4-27 (208)
348 3auy_A DNA double-strand break 96.7 0.0011 3.9E-08 63.0 4.4 22 123-144 26-47 (371)
349 3fb4_A Adenylate kinase; psych 96.7 0.00089 3E-08 58.1 3.3 23 124-146 2-24 (216)
350 1ex7_A Guanylate kinase; subst 96.7 0.00086 3E-08 57.8 3.1 23 124-146 3-25 (186)
351 1zuh_A Shikimate kinase; alpha 96.7 0.001 3.4E-08 55.4 3.5 25 123-147 8-32 (168)
352 1f6b_A SAR1; gtpases, N-termin 96.6 0.0006 2E-08 58.5 1.9 33 111-144 15-47 (198)
353 3llm_A ATP-dependent RNA helic 96.6 0.00097 3.3E-08 59.0 3.3 30 115-144 69-98 (235)
354 3cf2_A TER ATPase, transitiona 96.6 0.0013 4.5E-08 68.7 4.8 116 122-263 511-650 (806)
355 3dl0_A Adenylate kinase; phosp 96.6 0.001 3.4E-08 57.8 3.3 23 124-146 2-24 (216)
356 3umf_A Adenylate kinase; rossm 96.6 0.0011 3.8E-08 58.6 3.6 31 117-147 24-54 (217)
357 2pbr_A DTMP kinase, thymidylat 96.6 0.001 3.5E-08 56.2 3.3 25 124-148 2-26 (195)
358 1qf9_A UMP/CMP kinase, protein 96.6 0.0011 3.6E-08 56.1 3.3 24 123-146 7-30 (194)
359 2iyv_A Shikimate kinase, SK; t 96.6 0.00078 2.7E-08 56.9 2.4 25 123-147 3-27 (184)
360 1m2o_B GTP-binding protein SAR 96.6 0.0011 3.7E-08 56.4 3.3 33 112-145 14-46 (190)
361 1e6c_A Shikimate kinase; phosp 96.6 0.00093 3.2E-08 55.6 2.8 24 123-146 3-26 (173)
362 1zak_A Adenylate kinase; ATP:A 96.6 0.0009 3.1E-08 58.5 2.7 26 122-147 5-30 (222)
363 2iut_A DNA translocase FTSK; n 96.6 0.0031 1.1E-07 63.3 6.9 52 119-171 211-267 (574)
364 2pt5_A Shikimate kinase, SK; a 96.6 0.0012 4.1E-08 54.7 3.4 24 124-147 2-25 (168)
365 3k53_A Ferrous iron transport 96.6 0.0011 3.7E-08 60.0 3.3 24 124-147 5-28 (271)
366 3a4m_A L-seryl-tRNA(SEC) kinas 96.6 0.0012 4.2E-08 59.5 3.4 27 121-147 3-29 (260)
367 1ukz_A Uridylate kinase; trans 96.5 0.0013 4.5E-08 56.4 3.4 25 122-146 15-39 (203)
368 3be4_A Adenylate kinase; malar 96.5 0.0015 5.1E-08 57.0 3.7 25 122-146 5-29 (217)
369 3eph_A TRNA isopentenyltransfe 96.5 0.0073 2.5E-07 58.1 8.7 25 123-147 3-27 (409)
370 1z2a_A RAS-related protein RAB 96.5 0.0013 4.5E-08 53.7 3.0 23 124-146 7-29 (168)
371 4edh_A DTMP kinase, thymidylat 96.5 0.0021 7.3E-08 56.4 4.3 36 121-157 5-40 (213)
372 2ged_A SR-beta, signal recogni 96.5 0.0015 5.2E-08 55.1 3.3 23 124-146 50-72 (193)
373 2ce2_X GTPase HRAS; signaling 96.5 0.0014 4.8E-08 53.1 3.0 23 124-146 5-27 (166)
374 1kao_A RAP2A; GTP-binding prot 96.4 0.0015 5.1E-08 53.1 3.1 23 124-146 5-27 (167)
375 2dyk_A GTP-binding protein; GT 96.4 0.0015 5.2E-08 53.0 3.1 23 124-146 3-25 (161)
376 2erx_A GTP-binding protein DI- 96.4 0.0016 5.4E-08 53.4 3.2 22 124-145 5-26 (172)
377 3tlx_A Adenylate kinase 2; str 96.4 0.0016 5.6E-08 58.1 3.5 27 120-146 27-53 (243)
378 3pxi_A Negative regulator of g 96.4 0.005 1.7E-07 64.0 7.6 118 121-262 200-326 (758)
379 2xb4_A Adenylate kinase; ATP-b 96.4 0.0016 5.5E-08 57.2 3.4 23 124-146 2-24 (223)
380 2nzj_A GTP-binding protein REM 96.4 0.0016 5.6E-08 53.6 3.2 23 124-146 6-28 (175)
381 1u8z_A RAS-related protein RAL 96.4 0.0016 5.5E-08 53.0 3.0 23 124-146 6-28 (168)
382 1z0j_A RAB-22, RAS-related pro 96.4 0.0016 5.6E-08 53.3 3.1 23 124-146 8-30 (170)
383 3q72_A GTP-binding protein RAD 96.4 0.0014 4.8E-08 53.6 2.5 23 124-146 4-26 (166)
384 1g16_A RAS-related protein SEC 96.4 0.0017 5.6E-08 53.2 3.0 23 124-146 5-27 (170)
385 1e4v_A Adenylate kinase; trans 96.4 0.0018 6.1E-08 56.3 3.3 23 124-146 2-24 (214)
386 1uj2_A Uridine-cytidine kinase 96.4 0.0017 5.9E-08 58.1 3.2 25 123-147 23-47 (252)
387 3sr0_A Adenylate kinase; phosp 96.4 0.0018 6.3E-08 56.5 3.3 24 124-147 2-25 (206)
388 1ek0_A Protein (GTP-binding pr 96.4 0.0018 6.1E-08 52.9 3.0 23 124-146 5-27 (170)
389 3q85_A GTP-binding protein REM 96.4 0.0018 6.3E-08 53.1 3.1 23 124-146 4-26 (169)
390 1z08_A RAS-related protein RAB 96.4 0.0018 6.2E-08 53.1 3.1 23 124-146 8-30 (170)
391 2qtf_A Protein HFLX, GTP-bindi 96.3 0.0017 5.7E-08 61.8 3.1 24 124-147 181-204 (364)
392 1wms_A RAB-9, RAB9, RAS-relate 96.3 0.0019 6.4E-08 53.5 3.1 23 124-146 9-31 (177)
393 2grj_A Dephospho-COA kinase; T 96.3 0.002 6.9E-08 55.7 3.3 24 123-146 13-36 (192)
394 1ky3_A GTP-binding protein YPT 96.3 0.0019 6.4E-08 53.5 3.1 23 124-146 10-32 (182)
395 1c1y_A RAS-related protein RAP 96.3 0.0019 6.4E-08 52.7 3.0 22 124-145 5-26 (167)
396 1r6b_X CLPA protein; AAA+, N-t 96.3 0.0054 1.9E-07 63.6 7.2 28 121-148 206-233 (758)
397 1ak2_A Adenylate kinase isoenz 96.3 0.0023 7.9E-08 56.5 3.8 27 121-147 15-41 (233)
398 2ohf_A Protein OLA1, GTP-bindi 96.3 0.0018 6.1E-08 62.3 3.2 29 117-145 17-45 (396)
399 1svi_A GTP-binding protein YSX 96.3 0.0018 6.1E-08 54.6 2.9 23 123-145 24-46 (195)
400 2bjv_A PSP operon transcriptio 96.3 0.0032 1.1E-07 56.4 4.7 41 117-158 24-64 (265)
401 1mky_A Probable GTP-binding pr 96.3 0.0018 6.1E-08 63.0 3.2 24 124-147 182-205 (439)
402 3p32_A Probable GTPase RV1496/ 96.3 0.0034 1.2E-07 59.3 4.9 37 122-159 79-115 (355)
403 3tw8_B RAS-related protein RAB 96.3 0.0017 6E-08 53.7 2.6 23 124-146 11-33 (181)
404 2fn4_A P23, RAS-related protei 96.3 0.002 7E-08 53.2 3.0 22 124-145 11-32 (181)
405 1r2q_A RAS-related protein RAB 96.3 0.0021 7.3E-08 52.4 3.0 22 124-145 8-29 (170)
406 3pqc_A Probable GTP-binding pr 96.3 0.002 6.8E-08 54.1 2.9 23 124-146 25-47 (195)
407 2lkc_A Translation initiation 96.2 0.003 1E-07 52.2 3.8 26 121-146 7-32 (178)
408 3clv_A RAB5 protein, putative; 96.2 0.0022 7.7E-08 53.9 3.1 23 124-146 9-31 (208)
409 4dsu_A GTPase KRAS, isoform 2B 96.2 0.0023 7.9E-08 53.4 3.1 23 124-146 6-28 (189)
410 2qmh_A HPR kinase/phosphorylas 96.2 0.0023 8E-08 55.8 3.1 26 121-146 33-58 (205)
411 2cxx_A Probable GTP-binding pr 96.2 0.0022 7.4E-08 53.7 2.8 23 124-146 3-25 (190)
412 3b1v_A Ferrous iron uptake tra 96.2 0.0025 8.6E-08 58.1 3.4 23 124-146 5-27 (272)
413 2hxs_A RAB-26, RAS-related pro 96.2 0.0026 9.1E-08 52.6 3.3 23 124-146 8-30 (178)
414 1fzq_A ADP-ribosylation factor 96.2 0.002 6.9E-08 54.2 2.5 23 123-145 17-39 (181)
415 3bc1_A RAS-related protein RAB 96.2 0.0025 8.4E-08 53.3 3.0 23 124-146 13-35 (195)
416 1upt_A ARL1, ADP-ribosylation 96.2 0.0025 8.7E-08 52.2 3.0 23 123-145 8-30 (171)
417 3lv8_A DTMP kinase, thymidylat 96.2 0.0038 1.3E-07 55.8 4.4 29 121-149 26-54 (236)
418 2y8e_A RAB-protein 6, GH09086P 96.2 0.0025 8.6E-08 52.6 3.0 22 124-145 16-37 (179)
419 2oil_A CATX-8, RAS-related pro 96.2 0.0025 8.6E-08 53.8 3.0 23 124-146 27-49 (193)
420 1ltq_A Polynucleotide kinase; 96.2 0.0027 9.2E-08 58.0 3.4 23 123-145 3-25 (301)
421 2f6r_A COA synthase, bifunctio 96.2 0.0026 9E-08 58.1 3.3 22 123-144 76-97 (281)
422 3t1o_A Gliding protein MGLA; G 96.1 0.0029 9.9E-08 53.1 3.3 26 124-149 16-41 (198)
423 1z0f_A RAB14, member RAS oncog 96.1 0.0027 9.1E-08 52.4 3.0 23 124-146 17-39 (179)
424 2gno_A DNA polymerase III, gam 96.1 0.035 1.2E-06 51.3 10.9 34 112-145 6-41 (305)
425 2xxa_A Signal recognition part 96.1 0.0075 2.6E-07 58.7 6.6 39 122-160 100-138 (433)
426 1g5t_A COB(I)alamin adenosyltr 96.1 0.017 5.7E-07 50.1 8.1 121 122-246 28-175 (196)
427 4tmk_A Protein (thymidylate ki 96.1 0.0043 1.5E-07 54.5 4.4 29 121-149 2-30 (213)
428 2a9k_A RAS-related protein RAL 96.1 0.0027 9.3E-08 52.8 3.0 23 124-146 20-42 (187)
429 2efe_B Small GTP-binding prote 96.1 0.0029 9.9E-08 52.5 3.1 23 124-146 14-36 (181)
430 1r8s_A ADP-ribosylation factor 96.1 0.0029 1E-07 51.5 3.0 22 124-145 2-23 (164)
431 1nrj_B SR-beta, signal recogni 96.1 0.0031 1E-07 54.4 3.3 23 124-146 14-36 (218)
432 1tue_A Replication protein E1; 96.1 0.0025 8.4E-08 55.9 2.6 28 119-146 55-82 (212)
433 1moz_A ARL1, ADP-ribosylation 96.1 0.0017 5.9E-08 54.1 1.6 23 122-144 18-40 (183)
434 2bme_A RAB4A, RAS-related prot 96.1 0.0029 9.9E-08 52.8 3.0 23 124-146 12-34 (186)
435 2g6b_A RAS-related protein RAB 96.1 0.003 1E-07 52.3 3.0 23 124-146 12-34 (180)
436 3con_A GTPase NRAS; structural 96.1 0.003 1E-07 53.1 3.0 23 124-146 23-45 (190)
437 2r44_A Uncharacterized protein 96.1 0.0014 4.9E-08 60.8 1.1 36 112-147 36-71 (331)
438 3d3q_A TRNA delta(2)-isopenten 96.1 0.0029 1E-07 59.6 3.2 25 123-147 8-32 (340)
439 3iev_A GTP-binding protein ERA 96.1 0.003 1E-07 58.5 3.2 24 123-146 11-34 (308)
440 2qen_A Walker-type ATPase; unk 96.0 0.0027 9.1E-08 58.6 2.8 35 112-146 21-55 (350)
441 3iby_A Ferrous iron transport 96.0 0.0032 1.1E-07 56.7 3.3 23 124-146 3-25 (256)
442 3uk6_A RUVB-like 2; hexameric 96.0 0.0035 1.2E-07 58.7 3.7 28 121-148 69-96 (368)
443 2bov_A RAla, RAS-related prote 96.0 0.0032 1.1E-07 53.5 3.0 23 124-146 16-38 (206)
444 1vg8_A RAS-related protein RAB 96.0 0.0032 1.1E-07 53.5 3.1 23 124-146 10-32 (207)
445 2wsm_A Hydrogenase expression/ 96.0 0.0034 1.2E-07 54.3 3.3 34 123-158 31-64 (221)
446 2gf0_A GTP-binding protein DI- 96.0 0.0033 1.1E-07 53.0 3.0 22 124-145 10-31 (199)
447 2xtp_A GTPase IMAP family memb 96.0 0.0036 1.2E-07 55.9 3.4 23 124-146 24-46 (260)
448 3crm_A TRNA delta(2)-isopenten 96.0 0.0035 1.2E-07 58.7 3.3 25 123-147 6-30 (323)
449 1m7b_A RND3/RHOE small GTP-bin 96.0 0.0034 1.2E-07 52.7 3.0 23 124-146 9-31 (184)
450 3kkq_A RAS-related protein M-R 96.0 0.0035 1.2E-07 52.2 3.0 23 124-146 20-42 (183)
451 2fg5_A RAB-22B, RAS-related pr 96.0 0.0035 1.2E-07 53.1 3.0 23 124-146 25-47 (192)
452 2gf9_A RAS-related protein RAB 96.0 0.0035 1.2E-07 52.8 3.0 23 124-146 24-46 (189)
453 1wf3_A GTP-binding protein; GT 96.0 0.0037 1.2E-07 57.8 3.4 23 124-146 9-31 (301)
454 3tkl_A RAS-related protein RAB 96.0 0.0035 1.2E-07 52.8 3.0 23 124-146 18-40 (196)
455 1ofh_A ATP-dependent HSL prote 96.0 0.0031 1E-07 57.4 2.8 26 122-147 50-75 (310)
456 1ksh_A ARF-like protein 2; sma 95.9 0.0034 1.2E-07 52.5 2.8 25 122-146 18-42 (186)
457 1mh1_A RAC1; GTP-binding, GTPa 95.9 0.0037 1.3E-07 51.9 3.0 22 124-145 7-28 (186)
458 3zvl_A Bifunctional polynucleo 95.9 0.0043 1.5E-07 59.9 3.7 26 121-146 257-282 (416)
459 1zbd_A Rabphilin-3A; G protein 95.9 0.004 1.4E-07 52.9 3.1 23 124-146 10-32 (203)
460 3ihw_A Centg3; RAS, centaurin, 95.9 0.004 1.4E-07 52.6 3.1 22 124-145 22-43 (184)
461 3t5g_A GTP-binding protein RHE 95.9 0.0039 1.3E-07 51.8 3.0 21 124-144 8-28 (181)
462 3v9p_A DTMP kinase, thymidylat 95.9 0.0031 1.1E-07 56.0 2.3 30 119-148 22-51 (227)
463 2ocp_A DGK, deoxyguanosine kin 95.9 0.0043 1.5E-07 54.9 3.3 26 122-147 2-27 (241)
464 3oes_A GTPase rhebl1; small GT 95.9 0.0039 1.3E-07 53.1 3.0 23 124-146 26-48 (201)
465 1z06_A RAS-related protein RAB 95.9 0.0042 1.4E-07 52.3 3.1 23 124-146 22-44 (189)
466 1a7j_A Phosphoribulokinase; tr 95.9 0.0024 8.2E-08 58.8 1.6 36 122-158 5-40 (290)
467 3a1s_A Iron(II) transport prot 95.9 0.0041 1.4E-07 56.0 3.2 23 124-146 7-29 (258)
468 2h92_A Cytidylate kinase; ross 95.9 0.004 1.4E-07 54.0 2.9 25 122-146 3-27 (219)
469 3dz8_A RAS-related protein RAB 95.9 0.0041 1.4E-07 52.5 3.0 23 124-146 25-47 (191)
470 1yrb_A ATP(GTP)binding protein 95.9 0.0061 2.1E-07 54.2 4.2 37 122-160 14-50 (262)
471 2bcg_Y Protein YP2, GTP-bindin 95.8 0.0041 1.4E-07 53.1 3.0 23 124-146 10-32 (206)
472 4hlc_A DTMP kinase, thymidylat 95.8 0.0067 2.3E-07 52.8 4.4 36 122-159 2-37 (205)
473 3nbx_X ATPase RAVA; AAA+ ATPas 95.8 0.0031 1E-07 62.6 2.4 36 112-147 31-66 (500)
474 1x3s_A RAS-related protein RAB 95.8 0.0043 1.5E-07 52.0 3.0 23 124-146 17-39 (195)
475 3exa_A TRNA delta(2)-isopenten 95.8 0.0048 1.7E-07 57.5 3.5 26 122-147 3-28 (322)
476 3bwd_D RAC-like GTP-binding pr 95.8 0.0044 1.5E-07 51.4 3.0 23 124-146 10-32 (182)
477 2a5j_A RAS-related protein RAB 95.8 0.0044 1.5E-07 52.3 3.0 23 124-146 23-45 (191)
478 3hws_A ATP-dependent CLP prote 95.8 0.0039 1.3E-07 58.7 3.0 26 121-146 50-75 (363)
479 1jwy_B Dynamin A GTPase domain 95.8 0.0045 1.5E-07 56.8 3.3 23 124-146 26-48 (315)
480 1zj6_A ADP-ribosylation factor 95.8 0.0045 1.5E-07 51.9 3.1 23 122-144 16-38 (187)
481 2qag_A Septin-2, protein NEDD5 95.8 0.0031 1.1E-07 59.8 2.3 22 125-146 40-61 (361)
482 3i8s_A Ferrous iron transport 95.8 0.0047 1.6E-07 56.1 3.4 23 124-146 5-27 (274)
483 2o52_A RAS-related protein RAB 95.8 0.0045 1.5E-07 52.8 3.1 23 124-146 27-49 (200)
484 2dby_A GTP-binding protein; GD 95.8 0.0041 1.4E-07 59.3 3.0 22 125-146 4-25 (368)
485 1zd9_A ADP-ribosylation factor 95.8 0.0046 1.6E-07 52.1 3.0 24 123-146 23-46 (188)
486 2atv_A RERG, RAS-like estrogen 95.8 0.0047 1.6E-07 52.3 3.1 22 124-145 30-51 (196)
487 3cbq_A GTP-binding protein REM 95.8 0.0033 1.1E-07 53.7 2.1 23 124-146 25-47 (195)
488 2p5s_A RAS and EF-hand domain 95.8 0.0047 1.6E-07 52.6 3.0 24 123-146 29-52 (199)
489 3cph_A RAS-related protein SEC 95.8 0.0047 1.6E-07 52.8 3.0 23 124-146 22-44 (213)
490 2h17_A ADP-ribosylation factor 95.8 0.0042 1.4E-07 51.9 2.6 22 124-145 23-44 (181)
491 2il1_A RAB12; G-protein, GDP, 95.8 0.0041 1.4E-07 52.7 2.6 23 124-146 28-50 (192)
492 3tmk_A Thymidylate kinase; pho 95.8 0.0054 1.8E-07 54.0 3.3 29 120-148 3-31 (216)
493 2h57_A ADP-ribosylation factor 95.7 0.0036 1.2E-07 52.7 2.1 24 123-146 22-45 (190)
494 3tqf_A HPR(Ser) kinase; transf 95.7 0.0054 1.9E-07 52.3 3.2 25 120-144 14-38 (181)
495 3reg_A RHO-like small GTPase; 95.7 0.0051 1.7E-07 52.0 3.0 23 124-146 25-47 (194)
496 3t5d_A Septin-7; GTP-binding p 95.7 0.0046 1.6E-07 56.0 2.9 22 124-145 10-31 (274)
497 2ew1_A RAS-related protein RAB 95.7 0.005 1.7E-07 53.0 3.0 23 124-146 28-50 (201)
498 2hjg_A GTP-binding protein ENG 95.7 0.018 6.2E-07 55.8 7.2 23 124-146 5-27 (436)
499 2f7s_A C25KG, RAS-related prot 95.7 0.0054 1.9E-07 52.8 3.2 23 124-146 27-49 (217)
500 2cjw_A GTP-binding protein GEM 95.7 0.0053 1.8E-07 52.2 3.0 22 124-145 8-29 (192)
No 1
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=4.8e-34 Score=264.88 Aligned_cols=168 Identities=15% Similarity=0.219 Sum_probs=131.6
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCC--------------------CeEEE
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ--------------------KRVVI 156 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~--------------------~~i~~ 156 (337)
+++++++|+... .+++++++.+++|++++|+||||||||||+++|+|+++|+.+ ..+.+
T Consensus 10 i~~ls~~y~~~~-~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ig~ 88 (275)
T 3gfo_A 10 VEELNYNYSDGT-HALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRESIGI 88 (275)
T ss_dssp EEEEEEECTTSC-EEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHSEEE
T ss_pred EEEEEEEECCCC-eEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhCcEEE
Confidence 779999997543 149999999999999999999999999999999999988721 12455
Q ss_pred EcCCccc-ccCCC-------------Ccccc----c-------c----cchhccCCCcchhHHHHHHHHHhhCCcEEEEc
Q 019702 157 VDTSNEI-GGDGD-------------IPHSA----I-------G----TARRMQVPEPSLQHKVMIEAVENHMPEVIIVD 207 (337)
Q Consensus 157 v~~~~ei-~~~~~-------------~~~~~----~-------~----~~~~~~~~S~g~k~r~~ia~al~~~P~vlilD 207 (337)
++|.... .+... .+... + + ..+....+|+|||||++||+||+++|++||+|
T Consensus 89 v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~~P~lLlLD 168 (275)
T 3gfo_A 89 VFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILD 168 (275)
T ss_dssp ECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred EEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 5554321 00000 00000 0 0 01234457999999999999999999999999
Q ss_pred CCCCHHHH-------HHHHHHH-hcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHh
Q 019702 208 EIGTEAEA-------HACRSIA-ERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (337)
Q Consensus 208 Ep~~~ld~-------~~l~~~~-~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~ 267 (337)
|||+++|. +.+.+++ +.|.|||++||+++++..+||+++ +|++|++++.|++++++..
T Consensus 169 EPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~--~l~~G~i~~~g~~~~~~~~ 234 (275)
T 3gfo_A 169 EPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVF--VMKEGRVILQGNPKEVFAE 234 (275)
T ss_dssp CTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEE--EEETTEEEEEECHHHHTHH
T ss_pred CccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEE--EEECCEEEEECCHHHHhcC
Confidence 99999994 3456665 559999999999999999999999 9999999999999998764
No 2
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=8e-34 Score=273.62 Aligned_cols=168 Identities=18% Similarity=0.193 Sum_probs=134.4
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCC----------------CeEEEEcCC
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ----------------KRVVIVDTS 160 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~----------------~~i~~v~~~ 160 (337)
+++++++|+...+ ++++++.+++|++++|+||||||||||||+|+|+++|+.+ +.+.++.|.
T Consensus 6 ~~~l~~~yg~~~~--L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~VfQ~ 83 (381)
T 3rlf_A 6 LQNVTKAWGEVVV--SKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQS 83 (381)
T ss_dssp EEEEEEEETTEEE--EEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEEEECTT
T ss_pred EEeEEEEECCEEE--EeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCEEEEecC
Confidence 6799999987655 9999999999999999999999999999999999998721 235555554
Q ss_pred cccccCCCCccccc------------------------c----cchhccCCCcchhHHHHHHHHHhhCCcEEEEcCCCCH
Q 019702 161 NEIGGDGDIPHSAI------------------------G----TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTE 212 (337)
Q Consensus 161 ~ei~~~~~~~~~~~------------------------~----~~~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~~ 212 (337)
..+.....+.++.. + ..+....+|+|||||++||+||+.+|++||+||||++
T Consensus 84 ~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPts~ 163 (381)
T 3rlf_A 84 YALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSN 163 (381)
T ss_dssp CCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEESTTTT
T ss_pred CcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEECCCcC
Confidence 33211101100000 0 0133456799999999999999999999999999999
Q ss_pred HHH-------HHHHHHHh-cCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHhh
Q 019702 213 AEA-------HACRSIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARRC 268 (337)
Q Consensus 213 ld~-------~~l~~~~~-~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~~ 268 (337)
+|. +.+.++.+ .|.|+|++||+++++..+||+++ +|++|++++.|+|++++..+
T Consensus 164 LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~--vl~~G~i~~~g~~~~l~~~p 225 (381)
T 3rlf_A 164 LDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIV--VLDAGRVAQVGKPLELYHYP 225 (381)
T ss_dssp SCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEE--EEETTEEEEEECHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEE--EEECCEEEEEeCHHHHHhCC
Confidence 994 34556654 49999999999999999999999 99999999999999998764
No 3
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=1.4e-33 Score=270.18 Aligned_cols=168 Identities=15% Similarity=0.139 Sum_probs=131.3
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCC--------------------CeEEE
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ--------------------KRVVI 156 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~--------------------~~i~~ 156 (337)
+++++++|+...+ ++++++.+++|++++|+||||||||||||+|+|+++|+.+ +++.+
T Consensus 7 i~~ls~~y~~~~~--L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig~ 84 (359)
T 3fvq_A 7 IGHLSKSFQNTPV--LNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLGY 84 (359)
T ss_dssp EEEEEEEETTEEE--EEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCCEE
T ss_pred EEeEEEEECCEEE--EEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCEEE
Confidence 6799999987655 9999999999999999999999999999999999998721 12334
Q ss_pred EcCCcccccCCCCcccc-----------------c-------c----cchhccCCCcchhHHHHHHHHHhhCCcEEEEcC
Q 019702 157 VDTSNEIGGDGDIPHSA-----------------I-------G----TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDE 208 (337)
Q Consensus 157 v~~~~ei~~~~~~~~~~-----------------~-------~----~~~~~~~~S~g~k~r~~ia~al~~~P~vlilDE 208 (337)
+.|...+.....+.++. + + ..+....+|||||||++||+||+.+|++|||||
T Consensus 85 vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~lLLLDE 164 (359)
T 3fvq_A 85 LVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILLDE 164 (359)
T ss_dssp ECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEES
T ss_pred EeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 44332211100000000 0 0 013345689999999999999999999999999
Q ss_pred CCCHHHHH-------HHHHH-HhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHhh
Q 019702 209 IGTEAEAH-------ACRSI-AERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARRC 268 (337)
Q Consensus 209 p~~~ld~~-------~l~~~-~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~~ 268 (337)
||+++|.. .+.++ .+.|.|+|++|||++++..+||+++ +|++|++++.|+|++++..+
T Consensus 165 Pts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~--vl~~G~i~~~g~~~el~~~p 230 (359)
T 3fvq_A 165 PFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIA--VMKQGRILQTASPHELYRQP 230 (359)
T ss_dssp TTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEE--EEETTEEEEEECHHHHHHSC
T ss_pred CcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEE--EEECCEEEEEeCHHHHHhCc
Confidence 99999952 23343 3569999999999999999999999 99999999999999998753
No 4
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=9.7e-34 Score=271.49 Aligned_cols=170 Identities=12% Similarity=0.129 Sum_probs=133.7
Q ss_pred EeeEEEEECCc--cccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCC---------------------Ce
Q 019702 97 IVGLTCRVGRA--VSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ---------------------KR 153 (337)
Q Consensus 97 i~~l~~r~~~~--~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~---------------------~~ 153 (337)
+++++++|+.. ...+++++++.+++|++++|+||||||||||+|+|+|+++|+.+ ++
T Consensus 27 v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~~r~~ 106 (366)
T 3tui_C 27 LSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQ 106 (366)
T ss_dssp EEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHHHHTT
T ss_pred EEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhCc
Confidence 67999999643 22359999999999999999999999999999999999998721 23
Q ss_pred EEEEcCCcccccCCCCcccc------------------------cc----cchhccCCCcchhHHHHHHHHHhhCCcEEE
Q 019702 154 VVIVDTSNEIGGDGDIPHSA------------------------IG----TARRMQVPEPSLQHKVMIEAVENHMPEVII 205 (337)
Q Consensus 154 i~~v~~~~ei~~~~~~~~~~------------------------~~----~~~~~~~~S~g~k~r~~ia~al~~~P~vli 205 (337)
+.+++|...+.....+.++. ++ ..+....+|||||||++||+||+++|++||
T Consensus 107 Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~~P~lLL 186 (366)
T 3tui_C 107 IGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLL 186 (366)
T ss_dssp EEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTTCCSEEE
T ss_pred EEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 55555543322110110000 00 013345679999999999999999999999
Q ss_pred EcCCCCHHHH-------HHHHHHHh-cCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHhh
Q 019702 206 VDEIGTEAEA-------HACRSIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARRC 268 (337)
Q Consensus 206 lDEp~~~ld~-------~~l~~~~~-~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~~ 268 (337)
+||||+++|. +.+.++++ .|.|||++||+++++..+||+++ +|++|++++.|++++++..+
T Consensus 187 lDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~--vl~~G~iv~~g~~~ev~~~p 255 (366)
T 3tui_C 187 CDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVA--VISNGELIEQDTVSEVFSHP 255 (366)
T ss_dssp EESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEE--EEETTEEEECCBHHHHHSSC
T ss_pred EECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEE--EEECCEEEEEcCHHHHHhCC
Confidence 9999999994 44666654 49999999999999999999999 99999999999999998753
No 5
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=3.1e-33 Score=258.39 Aligned_cols=166 Identities=19% Similarity=0.246 Sum_probs=131.1
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeE-------------------EEE
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRV-------------------VIV 157 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i-------------------~~v 157 (337)
+++++++|+...+ ++++++.+++|++++|+||||||||||+++|+|+++|+. +.| .++
T Consensus 14 ~~~l~~~~~~~~v--L~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~-G~I~~~g~~~~~~~~~~~~~~i~~v 90 (266)
T 4g1u_C 14 ASHLHYHVQQQAL--INDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSH-GECHLLGQNLNSWQPKALARTRAVM 90 (266)
T ss_dssp EEEEEEEETTEEE--EEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSS-CEEEETTEETTTSCHHHHHHHEEEE
T ss_pred EEeEEEEeCCeeE--EEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCC-cEEEECCEECCcCCHHHHhheEEEE
Confidence 6799999987665 999999999999999999999999999999999999873 333 344
Q ss_pred cCCcccccCCCCccc---------------cc-------c----cchhccCCCcchhHHHHHHHHHhh------CCcEEE
Q 019702 158 DTSNEIGGDGDIPHS---------------AI-------G----TARRMQVPEPSLQHKVMIEAVENH------MPEVII 205 (337)
Q Consensus 158 ~~~~ei~~~~~~~~~---------------~~-------~----~~~~~~~~S~g~k~r~~ia~al~~------~P~vli 205 (337)
.+...+.+...+.++ .+ + ..+....+|+||+||++||+||++ +|++||
T Consensus 91 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLl 170 (266)
T 4g1u_C 91 RQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLF 170 (266)
T ss_dssp CSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEE
T ss_pred ecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEE
Confidence 443322111000000 00 0 012345589999999999999999 999999
Q ss_pred EcCCCCHHHH-------HHHHHHHhc-CCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHh
Q 019702 206 VDEIGTEAEA-------HACRSIAER-GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (337)
Q Consensus 206 lDEp~~~ld~-------~~l~~~~~~-G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~ 267 (337)
+||||+++|. +.+.+++++ |.|||++||+++++..+||+++ +|++|++++.|++++++..
T Consensus 171 lDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~--vl~~G~i~~~g~~~~~~~~ 238 (266)
T 4g1u_C 171 LDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIM--LLAQGKLVACGTPEEVLNA 238 (266)
T ss_dssp ECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEE--EEETTEEEEEECHHHHCCH
T ss_pred EeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEE--EEECCEEEEEcCHHHHhCc
Confidence 9999999994 445566655 5799999999999999999999 9999999999999998753
No 6
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.98 E-value=8.9e-33 Score=265.01 Aligned_cols=168 Identities=17% Similarity=0.199 Sum_probs=132.8
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCC----------------CeEEEEcCC
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ----------------KRVVIVDTS 160 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~----------------~~i~~v~~~ 160 (337)
+++++++|+.... ++++++.+++|++++|+||||||||||||+|+|+++|+.+ +++.++.+.
T Consensus 6 ~~~l~~~y~~~~v--l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~ 83 (359)
T 2yyz_A 6 VVNLKKYFGKVKA--VDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMVFQN 83 (359)
T ss_dssp EEEEEEEETTEEE--EEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECSS
T ss_pred EEEEEEEECCEEE--EeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCcEEEEecC
Confidence 6799999976544 9999999999999999999999999999999999988721 235555554
Q ss_pred cccccCC-------------CCcccc----c-------c----cchhccCCCcchhHHHHHHHHHhhCCcEEEEcCCCCH
Q 019702 161 NEIGGDG-------------DIPHSA----I-------G----TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTE 212 (337)
Q Consensus 161 ~ei~~~~-------------~~~~~~----~-------~----~~~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~~ 212 (337)
..+.... ..+... + + ..+....+|+|||||++||+||+.+|++|+|||||++
T Consensus 84 ~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLDEP~s~ 163 (359)
T 2yyz_A 84 YALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSN 163 (359)
T ss_dssp CCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTT
T ss_pred cccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCccc
Confidence 3221100 000000 0 0 0123446899999999999999999999999999999
Q ss_pred HHH-------HHHHHHHh-cCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHhh
Q 019702 213 AEA-------HACRSIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARRC 268 (337)
Q Consensus 213 ld~-------~~l~~~~~-~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~~ 268 (337)
+|. +.+.++.+ .|.|+|++||+.+++..+||+++ +|++|++++.|+|++++..+
T Consensus 164 LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~--vl~~G~i~~~g~~~~l~~~p 225 (359)
T 2yyz_A 164 LDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIA--VFNQGKLVQYGTPDEVYDSP 225 (359)
T ss_dssp SCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEE--EEETTEEEEEECHHHHHHSC
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEE--EEECCEEEEeCCHHHHHhCc
Confidence 995 33555554 49999999999999999999999 99999999999999998764
No 7
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.98 E-value=9.8e-33 Score=254.58 Aligned_cols=166 Identities=16% Similarity=0.210 Sum_probs=131.0
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCe---------------------EE
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKR---------------------VV 155 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~---------------------i~ 155 (337)
+++++++|+...+ ++++++.+++|++++|+||||||||||+++|+|+++|+. +. +.
T Consensus 27 i~~l~~~y~~~~v--L~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~-G~I~~~g~~i~~~~~~~~~~~~~i~ 103 (263)
T 2olj_A 27 VHQLKKSFGSLEV--LKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDE-GEIIIDGINLKAKDTNLNKVREEVG 103 (263)
T ss_dssp EEEEEEEETTEEE--EEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSE-EEEEETTEESSSTTCCHHHHHHHEE
T ss_pred EEeEEEEECCEEE--EEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCC-cEEEECCEECCCccccHHHHhCcEE
Confidence 7799999976544 999999999999999999999999999999999998862 22 44
Q ss_pred EEcCCcccccCC--------------CCccc----cc-------cc----chhccCCCcchhHHHHHHHHHhhCCcEEEE
Q 019702 156 IVDTSNEIGGDG--------------DIPHS----AI-------GT----ARRMQVPEPSLQHKVMIEAVENHMPEVIIV 206 (337)
Q Consensus 156 ~v~~~~ei~~~~--------------~~~~~----~~-------~~----~~~~~~~S~g~k~r~~ia~al~~~P~vlil 206 (337)
++++...+.... ..+.. .+ +. .+....+|+||+||++||+||+.+|++||+
T Consensus 104 ~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~~p~lllL 183 (263)
T 2olj_A 104 MVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLF 183 (263)
T ss_dssp EECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred EEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHCCCCEEEE
Confidence 554432221100 00000 00 00 022345799999999999999999999999
Q ss_pred cCCCCHHHH-------HHHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHh
Q 019702 207 DEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (337)
Q Consensus 207 DEp~~~ld~-------~~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~ 267 (337)
||||+++|. +.+.++.++|.|||++||+++++..+||+++ +|++|+++..|++++++..
T Consensus 184 DEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~--~l~~G~i~~~g~~~~~~~~ 249 (263)
T 2olj_A 184 DEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVL--FMDGGYIIEEGKPEDLFDR 249 (263)
T ss_dssp ESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEE--EEETTEEEEEECHHHHHHS
T ss_pred eCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEE--EEECCEEEEECCHHHHHhC
Confidence 999999995 4456666669999999999999999999999 9999999999999998763
No 8
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.98 E-value=1.1e-32 Score=253.30 Aligned_cols=166 Identities=18% Similarity=0.239 Sum_probs=131.1
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCC-----------------CeEEEEcC
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ-----------------KRVVIVDT 159 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~-----------------~~i~~v~~ 159 (337)
+++++++|+...+ ++++++.+++|++++|+|||||||||||++|+|+++|+.+ ..+.++++
T Consensus 18 i~~l~~~y~~~~v--l~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~i~~v~q 95 (256)
T 1vpl_A 18 VKDLRKRIGKKEI--LKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPE 95 (256)
T ss_dssp EEEEEEEETTEEE--EEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEEECT
T ss_pred EEEEEEEECCEEE--EEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHhhcEEEEcC
Confidence 6799999976544 9999999999999999999999999999999999988721 13555555
Q ss_pred CcccccCC-------------CCccc----cc-------cc----chhccCCCcchhHHHHHHHHHhhCCcEEEEcCCCC
Q 019702 160 SNEIGGDG-------------DIPHS----AI-------GT----ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGT 211 (337)
Q Consensus 160 ~~ei~~~~-------------~~~~~----~~-------~~----~~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~ 211 (337)
...+.... ..+.. .+ +. .+....+|+||+||++||+||+.+|++|||||||+
T Consensus 96 ~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts 175 (256)
T 1vpl_A 96 EAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTS 175 (256)
T ss_dssp TCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTT
T ss_pred CCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 43321110 00000 00 00 12344689999999999999999999999999999
Q ss_pred HHHH-------HHHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHH
Q 019702 212 EAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (337)
Q Consensus 212 ~ld~-------~~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~ 266 (337)
++|. +.+.++.+.|.|||++||+++++..+||+++ +|++|++++.|+++++..
T Consensus 176 ~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~~d~v~--~l~~G~i~~~g~~~~~~~ 235 (256)
T 1vpl_A 176 GLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIA--LIHNGTIVETGTVEELKE 235 (256)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEE--EEETTEEEEEEEHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHCCEEE--EEECCEEEEecCHHHHHH
Confidence 9995 3455666679999999999999989999999 999999999999998865
No 9
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.97 E-value=1.5e-32 Score=264.50 Aligned_cols=168 Identities=18% Similarity=0.235 Sum_probs=131.0
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCC----------------CeEEEEcCC
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ----------------KRVVIVDTS 160 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~----------------~~i~~v~~~ 160 (337)
+++++++|+.... ++++++.+++|++++|+||||||||||||+|+|+++|+.+ +++.++.|.
T Consensus 14 ~~~l~~~y~~~~v--l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~ 91 (372)
T 1v43_A 14 LENLTKRFGNFTA--VNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQS 91 (372)
T ss_dssp EEEEEEEETTEEE--EEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEEC-
T ss_pred EEEEEEEECCEEE--EeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChhhCcEEEEecC
Confidence 6799999976544 9999999999999999999999999999999999998721 234555554
Q ss_pred cccccCC-------------CCcccc----c-------c----cchhccCCCcchhHHHHHHHHHhhCCcEEEEcCCCCH
Q 019702 161 NEIGGDG-------------DIPHSA----I-------G----TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTE 212 (337)
Q Consensus 161 ~ei~~~~-------------~~~~~~----~-------~----~~~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~~ 212 (337)
..+.... ..+... + + ..+....+|+|||||++||+||+.+|++|+||||+++
T Consensus 92 ~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~ 171 (372)
T 1v43_A 92 YAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSN 171 (372)
T ss_dssp -----CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTT
T ss_pred cccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCcc
Confidence 3221100 001000 0 0 0133456899999999999999999999999999999
Q ss_pred HHH-------HHHHHHHhc-CCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHhh
Q 019702 213 AEA-------HACRSIAER-GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARRC 268 (337)
Q Consensus 213 ld~-------~~l~~~~~~-G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~~ 268 (337)
+|. +.+.++.++ |.|+|++||+.+++..+||+++ +|++|++++.|+|++++..+
T Consensus 172 LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~--vl~~G~i~~~g~~~~l~~~p 233 (372)
T 1v43_A 172 LDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIA--VMNRGQLLQIGSPTEVYLRP 233 (372)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEE--EEETTEEEEEECHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEE--EEECCEEEEeCCHHHHHhCc
Confidence 995 345555544 9999999999999999999999 99999999999999998754
No 10
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.97 E-value=1.2e-32 Score=264.32 Aligned_cols=168 Identities=16% Similarity=0.220 Sum_probs=132.4
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCC----------------CeEEEEcCC
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ----------------KRVVIVDTS 160 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~----------------~~i~~v~~~ 160 (337)
+++++++|+.... ++++++.+++|++++|+||||||||||||+|+|+++|+.+ +++.++.|.
T Consensus 6 ~~~l~~~y~~~~v--l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~ 83 (362)
T 2it1_A 6 LENIVKKFGNFTA--LNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLVFQN 83 (362)
T ss_dssp EEEEEEESSSSEE--EEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECTT
T ss_pred EEeEEEEECCEEE--EEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcEEEEecC
Confidence 6799999976544 9999999999999999999999999999999999988721 235555554
Q ss_pred cccccCCCC-------------cccc----ccc-----------chhccCCCcchhHHHHHHHHHhhCCcEEEEcCCCCH
Q 019702 161 NEIGGDGDI-------------PHSA----IGT-----------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTE 212 (337)
Q Consensus 161 ~ei~~~~~~-------------~~~~----~~~-----------~~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~~ 212 (337)
..+.....+ +... +.. .+....+|+|||||++||+||+.+|++|+||||+++
T Consensus 84 ~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~ 163 (362)
T 2it1_A 84 WALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSN 163 (362)
T ss_dssp CCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESGGGG
T ss_pred cccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEECcccc
Confidence 322111000 0000 000 123445799999999999999999999999999999
Q ss_pred HHH-------HHHHHHHh-cCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHhh
Q 019702 213 AEA-------HACRSIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARRC 268 (337)
Q Consensus 213 ld~-------~~l~~~~~-~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~~ 268 (337)
+|. +.+.++.+ .|.|+|++||+.+++..+||+++ +|++|++++.|+|++++..+
T Consensus 164 LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~--vl~~G~i~~~g~~~~~~~~p 225 (362)
T 2it1_A 164 LDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIA--VIREGEILQVGTPDEVYYKP 225 (362)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEE--EEETTEEEEEECHHHHHHSC
T ss_pred CCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEE--EEECCEEEEEcCHHHHHhCc
Confidence 995 34555554 49999999999999999999999 99999999999999998754
No 11
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.97 E-value=8.9e-33 Score=264.49 Aligned_cols=168 Identities=20% Similarity=0.220 Sum_probs=131.3
Q ss_pred EeeEEEEE-CCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCC----------------CeEEEEcC
Q 019702 97 IVGLTCRV-GRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ----------------KRVVIVDT 159 (337)
Q Consensus 97 i~~l~~r~-~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~----------------~~i~~v~~ 159 (337)
+++++++| +...+ ++++++.+++|++++|+||||||||||||+|+|+++|+.+ +.+.++++
T Consensus 17 ~~~l~~~y~g~~~v--l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q 94 (355)
T 1z47_A 17 FVGVEKIYPGGARS--VRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNVGLVFQ 94 (355)
T ss_dssp EEEEEECCTTSTTC--EEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSSEEEECG
T ss_pred EEEEEEEEcCCCEE--EeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhCcEEEEec
Confidence 77999999 65444 9999999999999999999999999999999999988721 23444444
Q ss_pred CcccccCCC-------------Ccccc----c-------c----cchhccCCCcchhHHHHHHHHHhhCCcEEEEcCCCC
Q 019702 160 SNEIGGDGD-------------IPHSA----I-------G----TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGT 211 (337)
Q Consensus 160 ~~ei~~~~~-------------~~~~~----~-------~----~~~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~ 211 (337)
...+..... .+... + + ..+....+|+|||||++||+||+.+|++|+|||||+
T Consensus 95 ~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s 174 (355)
T 1z47_A 95 NYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFA 174 (355)
T ss_dssp GGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTC
T ss_pred CcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 322211000 00000 0 0 012344589999999999999999999999999999
Q ss_pred HHHH-------HHHHHHHh-cCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHhh
Q 019702 212 EAEA-------HACRSIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARRC 268 (337)
Q Consensus 212 ~ld~-------~~l~~~~~-~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~~ 268 (337)
++|. +.+.++.+ .|.|+|++||+++++..+||+++ +|++|++++.|+|++++..+
T Consensus 175 ~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~--vl~~G~i~~~g~~~~l~~~p 237 (355)
T 1z47_A 175 AIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVL--VLHEGNVEQFGTPEEVYEKP 237 (355)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEE--EEETTEEEEEECHHHHHHSC
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEE--EEECCEEEEEcCHHHHHhCc
Confidence 9995 34555554 49999999999999999999999 99999999999999998754
No 12
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.97 E-value=2.2e-32 Score=249.06 Aligned_cols=166 Identities=14% Similarity=0.148 Sum_probs=131.3
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCC-------------------CeEEEE
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ-------------------KRVVIV 157 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~-------------------~~i~~v 157 (337)
+++++++|+...+ ++++++.+++|++++|+||||||||||+++|+|+++|+.+ ..+.++
T Consensus 9 ~~~l~~~y~~~~v--l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v 86 (240)
T 1ji0_A 9 VQSLHVYYGAIHA--IKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALV 86 (240)
T ss_dssp EEEEEEEETTEEE--EEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEEEE
T ss_pred EEeEEEEECCeeE--EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCEEEE
Confidence 6799999986544 9999999999999999999999999999999999988621 126666
Q ss_pred cCCcccccC---------C---CCcccc-----------c-cc----chhccCCCcchhHHHHHHHHHhhCCcEEEEcCC
Q 019702 158 DTSNEIGGD---------G---DIPHSA-----------I-GT----ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEI 209 (337)
Q Consensus 158 ~~~~ei~~~---------~---~~~~~~-----------~-~~----~~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp 209 (337)
++...+... . ...... + +. .+....+|+||+||++||+||+++|++||+|||
T Consensus 87 ~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEP 166 (240)
T 1ji0_A 87 PEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEP 166 (240)
T ss_dssp CSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECT
T ss_pred ecCCccCCCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 654322110 0 000000 0 00 122345899999999999999999999999999
Q ss_pred CCHHHH-------HHHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHH
Q 019702 210 GTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (337)
Q Consensus 210 ~~~ld~-------~~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~ 266 (337)
|+++|. +.+.++++.|.|||++||+++++..+||+++ ++++|+++..|++++++.
T Consensus 167 ts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~--~l~~G~i~~~g~~~~~~~ 228 (240)
T 1ji0_A 167 SLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGY--VLETGQIVLEGKASELLD 228 (240)
T ss_dssp TTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEE--EEETTEEEEEEEHHHHHT
T ss_pred cccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEE--EEECCEEEEEcCHHHHhc
Confidence 999995 3455566679999999999998989999999 999999999999998865
No 13
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.97 E-value=2.5e-32 Score=251.78 Aligned_cols=166 Identities=17% Similarity=0.211 Sum_probs=130.8
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCe-----------------------
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKR----------------------- 153 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~----------------------- 153 (337)
+++++++|+...+ ++++++.+++|++++|+||||||||||+++|+|+++|+. +.
T Consensus 9 i~~l~~~y~~~~v--l~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~-G~i~~~g~~~~~~~~~~~~~~~~~~ 85 (262)
T 1b0u_A 9 VIDLHKRYGGHEV--LKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSE-GAIIVNGQNINLVRDKDGQLKVADK 85 (262)
T ss_dssp EEEEEEEETTEEE--EEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSE-EEEEETTEECCEEECTTSSEEESCH
T ss_pred EeeEEEEECCEEE--EEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCC-cEEEECCEEccccccccccccccCh
Confidence 6799999976544 999999999999999999999999999999999998862 22
Q ss_pred ---------EEEEcCCcccccCC--------------CCccc----c-------cc-----cchhccCCCcchhHHHHHH
Q 019702 154 ---------VVIVDTSNEIGGDG--------------DIPHS----A-------IG-----TARRMQVPEPSLQHKVMIE 194 (337)
Q Consensus 154 ---------i~~v~~~~ei~~~~--------------~~~~~----~-------~~-----~~~~~~~~S~g~k~r~~ia 194 (337)
+.++++...+.... ..+.. . ++ ..+....+|+||+||++||
T Consensus 86 ~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~qRv~lA 165 (262)
T 1b0u_A 86 NQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIA 165 (262)
T ss_dssp HHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHH
T ss_pred hhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHHHHHHHHH
Confidence 44444432211100 00000 0 00 0122345899999999999
Q ss_pred HHHhhCCcEEEEcCCCCHHHH-------HHHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHh
Q 019702 195 AVENHMPEVIIVDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (337)
Q Consensus 195 ~al~~~P~vlilDEp~~~ld~-------~~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~ 267 (337)
+||+.+|++||+||||+++|. +.+.+++++|.|||++||+++++..+||+++ +|++|+++..|++++++..
T Consensus 166 raL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~--~l~~G~i~~~g~~~~~~~~ 243 (262)
T 1b0u_A 166 RALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVI--FLHQGKIEEEGDPEQVFGN 243 (262)
T ss_dssp HHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEE--EEETTEEEEEECHHHHHHS
T ss_pred HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEE--EEECCEEEEeCCHHHHHhC
Confidence 999999999999999999995 3456666669999999999999999999999 9999999999999998753
No 14
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.97 E-value=4e-32 Score=261.83 Aligned_cols=167 Identities=17% Similarity=0.230 Sum_probs=130.9
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCe-----------------------
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKR----------------------- 153 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~----------------------- 153 (337)
+++++++|+.... ++++++.+++|++++|+||||||||||||+|+|+++|+. +.
T Consensus 6 ~~~l~~~y~~~~v--l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~-G~I~i~g~~~~~~~~~~~~~~~~r~ 82 (372)
T 1g29_1 6 LVDVWKVFGEVTA--VREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSR-GQIYIGDKLVADPEKGIFVPPKDRD 82 (372)
T ss_dssp EEEEEEEETTEEE--EEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSE-EEEEETTEEEEEGGGTEECCGGGSS
T ss_pred EEeEEEEECCEEE--EeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCc-cEEEECCEECccccccccCCHhHCC
Confidence 6799999976544 999999999999999999999999999999999998872 22
Q ss_pred EEEEcCCcccccCCC-------------Ccccc----c-------c----cchhccCCCcchhHHHHHHHHHhhCCcEEE
Q 019702 154 VVIVDTSNEIGGDGD-------------IPHSA----I-------G----TARRMQVPEPSLQHKVMIEAVENHMPEVII 205 (337)
Q Consensus 154 i~~v~~~~ei~~~~~-------------~~~~~----~-------~----~~~~~~~~S~g~k~r~~ia~al~~~P~vli 205 (337)
+.++.|...+..... .+... + + ..+....+|+|||||++||+||+.+|++|+
T Consensus 83 ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLL 162 (372)
T 1g29_1 83 IAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFL 162 (372)
T ss_dssp EEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEE
T ss_pred EEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 333333322111000 00000 0 0 012344579999999999999999999999
Q ss_pred EcCCCCHHHH-------HHHHHHHh-cCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHhh
Q 019702 206 VDEIGTEAEA-------HACRSIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARRC 268 (337)
Q Consensus 206 lDEp~~~ld~-------~~l~~~~~-~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~~ 268 (337)
|||||+++|. +.+.++.+ .|.|+|++||+.+++..+||+++ +|++|++++.|+|++++..+
T Consensus 163 LDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~--vl~~G~i~~~g~~~~l~~~p 231 (372)
T 1g29_1 163 MDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIA--VMNRGVLQQVGSPDEVYDKP 231 (372)
T ss_dssp EECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEE--EEETTEEEEEECHHHHHHSC
T ss_pred ECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEE--EEeCCEEEEeCCHHHHHhCc
Confidence 9999999995 34555554 49999999999999999999999 99999999999999998764
No 15
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.97 E-value=2.9e-32 Score=261.19 Aligned_cols=170 Identities=16% Similarity=0.151 Sum_probs=131.2
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCC---------------------CeEE
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ---------------------KRVV 155 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~---------------------~~i~ 155 (337)
+++++++|+.....+++++++.+++|++++|+||||||||||||+|+|+++|+.+ +++.
T Consensus 6 i~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~r~ig 85 (353)
T 1oxx_K 6 VKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIG 85 (353)
T ss_dssp EEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGSCEE
T ss_pred EEeEEEEECCEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhhCCEE
Confidence 6799999976540049999999999999999999999999999999999988721 1234
Q ss_pred EEcCCcccccCC-------------CCcccc----c-------c----cchhccCCCcchhHHHHHHHHHhhCCcEEEEc
Q 019702 156 IVDTSNEIGGDG-------------DIPHSA----I-------G----TARRMQVPEPSLQHKVMIEAVENHMPEVIIVD 207 (337)
Q Consensus 156 ~v~~~~ei~~~~-------------~~~~~~----~-------~----~~~~~~~~S~g~k~r~~ia~al~~~P~vlilD 207 (337)
++++...+.... ..+... + + ..+....+|+|||||++||+||+.+|++|+||
T Consensus 86 ~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~~P~lLLLD 165 (353)
T 1oxx_K 86 MVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLD 165 (353)
T ss_dssp EEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred EEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 444432221100 000000 0 0 01234467999999999999999999999999
Q ss_pred CCCCHHHH-------HHHHHHHh-cCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHhh
Q 019702 208 EIGTEAEA-------HACRSIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARRC 268 (337)
Q Consensus 208 Ep~~~ld~-------~~l~~~~~-~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~~ 268 (337)
|||+++|. +.+.++.+ .|.|+|++||+.+++..+||+++ +|++|++++.|++++++..+
T Consensus 166 EP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~--vl~~G~i~~~g~~~~l~~~p 232 (353)
T 1oxx_K 166 EPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVG--VLVKGKLVQVGKPEDLYDNP 232 (353)
T ss_dssp STTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEE--EEETTEEEEEECHHHHHHSC
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE--EEECCEEEEEcCHHHHHhCc
Confidence 99999993 44556654 49999999999999999999999 99999999999999998754
No 16
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.97 E-value=1.5e-32 Score=249.42 Aligned_cols=165 Identities=12% Similarity=0.082 Sum_probs=126.2
Q ss_pred EeeEEEEECCcc--ccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCC----------------------C
Q 019702 97 IVGLTCRVGRAV--SGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ----------------------K 152 (337)
Q Consensus 97 i~~l~~r~~~~~--~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~----------------------~ 152 (337)
+++++++|+... ..+++++++.+++|++++|+||||||||||+++|+|+++|+.+ .
T Consensus 4 ~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~ 83 (235)
T 3tif_A 4 LKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRD 83 (235)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHHHH
T ss_pred EEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHhhc
Confidence 679999997432 2359999999999999999999999999999999999998721 1
Q ss_pred eEEEEcCCcccccCC----------------CCcccc-----------ccc-----chhccCCCcchhHHHHHHHHHhhC
Q 019702 153 RVVIVDTSNEIGGDG----------------DIPHSA-----------IGT-----ARRMQVPEPSLQHKVMIEAVENHM 200 (337)
Q Consensus 153 ~i~~v~~~~ei~~~~----------------~~~~~~-----------~~~-----~~~~~~~S~g~k~r~~ia~al~~~ 200 (337)
.+.++++...+.... ..+... ++. .+....+|+||+||++||+||+++
T Consensus 84 ~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral~~~ 163 (235)
T 3tif_A 84 KIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANN 163 (235)
T ss_dssp HEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTC
T ss_pred cEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHHHcC
Confidence 366666654332110 000000 000 123456899999999999999999
Q ss_pred CcEEEEcCCCCHHHH-------HHHHHHHhc-CCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHH
Q 019702 201 PEVIIVDEIGTEAEA-------HACRSIAER-GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEAR 264 (337)
Q Consensus 201 P~vlilDEp~~~ld~-------~~l~~~~~~-G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~ 264 (337)
|++||+||||+++|. +.+.+++++ |.|||++||+++.+ .+||+++ +|++|+++..++++++
T Consensus 164 p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~-~~~d~i~--~l~~G~i~~~~~~~~~ 232 (235)
T 3tif_A 164 PPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVA-RFGERII--YLKDGEVEREEKLRGF 232 (235)
T ss_dssp CSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHH-TTSSEEE--EEETTEEEEEEECC--
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHH-HhCCEEE--EEECCEEEEEcChhhh
Confidence 999999999999994 345666544 99999999999865 6899999 9999999999887764
No 17
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.97 E-value=3.5e-32 Score=250.13 Aligned_cols=163 Identities=15% Similarity=0.132 Sum_probs=128.5
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCC-------------------CeEEEE
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ-------------------KRVVIV 157 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~-------------------~~i~~v 157 (337)
+++++++|+...+ ++++++.+++|++++|+||||||||||+++|+|+++|+.+ ..+.++
T Consensus 10 i~~l~~~y~~~~v--l~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v 87 (257)
T 1g6h_A 10 TENIVKYFGEFKA--LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRT 87 (257)
T ss_dssp EEEEEEEETTEEE--EEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEEEC
T ss_pred EeeeEEEECCEee--EeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEE
Confidence 7799999976554 9999999999999999999999999999999999988621 124555
Q ss_pred cCCcccccC---------C-CC----------------cccc----c-------cc----chhccCCCcchhHHHHHHHH
Q 019702 158 DTSNEIGGD---------G-DI----------------PHSA----I-------GT----ARRMQVPEPSLQHKVMIEAV 196 (337)
Q Consensus 158 ~~~~ei~~~---------~-~~----------------~~~~----~-------~~----~~~~~~~S~g~k~r~~ia~a 196 (337)
++...+... . .. .... + +. .+....+|+|||||++||+|
T Consensus 88 ~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkQrv~iAra 167 (257)
T 1g6h_A 88 FQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRA 167 (257)
T ss_dssp CCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHH
T ss_pred ccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHHHHHHHHHH
Confidence 544322110 0 00 0000 0 00 12234579999999999999
Q ss_pred HhhCCcEEEEcCCCCHHHH-------HHHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHH
Q 019702 197 ENHMPEVIIVDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEA 263 (337)
Q Consensus 197 l~~~P~vlilDEp~~~ld~-------~~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~ 263 (337)
++.+|++||+||||+++|. +.+.+++++|.|||++||+++++..+||+++ ++++|+++..|++++
T Consensus 168 L~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~--~l~~G~i~~~g~~~~ 239 (257)
T 1g6h_A 168 LMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLY--VMFNGQIIAEGRGEE 239 (257)
T ss_dssp HHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEE--EEETTEEEEEEESHH
T ss_pred HHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEE--EEECCEEEEEeCHHH
Confidence 9999999999999999995 3456666669999999999999999999999 999999999999988
No 18
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.97 E-value=2.2e-32 Score=246.60 Aligned_cols=159 Identities=14% Similarity=0.112 Sum_probs=122.8
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCC----------------------CeE
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ----------------------KRV 154 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~----------------------~~i 154 (337)
+++++++|+.... ++++++.+++|++++|+||||||||||+++|+|+++|+.+ ..+
T Consensus 7 ~~~l~~~y~~~~~--l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i 84 (224)
T 2pcj_A 7 AENIKKVIRGYEI--LKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNRKL 84 (224)
T ss_dssp EEEEEEEETTEEE--EEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHHHHE
T ss_pred EEeEEEEECCEee--EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHhCcE
Confidence 6799999976544 9999999999999999999999999999999999988721 124
Q ss_pred EEEcCCcccccCCC-------------Ccccc----c-------cc----chhccCCCcchhHHHHHHHHHhhCCcEEEE
Q 019702 155 VIVDTSNEIGGDGD-------------IPHSA----I-------GT----ARRMQVPEPSLQHKVMIEAVENHMPEVIIV 206 (337)
Q Consensus 155 ~~v~~~~ei~~~~~-------------~~~~~----~-------~~----~~~~~~~S~g~k~r~~ia~al~~~P~vlil 206 (337)
.++++...+..... .+... + +. .+....+|+||+||++||+|++.+|++|++
T Consensus 85 ~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllL 164 (224)
T 2pcj_A 85 GFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFA 164 (224)
T ss_dssp EEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTTCCSEEEE
T ss_pred EEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 55544332211000 00000 0 00 022345799999999999999999999999
Q ss_pred cCCCCHHHH-------HHHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecC
Q 019702 207 DEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGD 260 (337)
Q Consensus 207 DEp~~~ld~-------~~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~ 260 (337)
||||+++|. +.+.+++++|.|||++||+.+++ .+||+++ ++++|++++.|+
T Consensus 165 DEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~-~~~d~v~--~l~~G~i~~~g~ 222 (224)
T 2pcj_A 165 DEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELA-ELTHRTL--EMKDGKVVGEIT 222 (224)
T ss_dssp ESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHH-TTSSEEE--EEETTEEEEEEE
T ss_pred eCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHH-HhCCEEE--EEECCEEEEEee
Confidence 999999995 34566666699999999999987 7899999 999999998775
No 19
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.97 E-value=2.5e-32 Score=261.02 Aligned_cols=166 Identities=15% Similarity=0.189 Sum_probs=130.8
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCe-----------------EEEEcC
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKR-----------------VVIVDT 159 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~-----------------i~~v~~ 159 (337)
+++++++|+.. . ++++++.+++|++++|+||||||||||||+|+|+++|+. +. +.++.+
T Consensus 4 ~~~l~~~y~~~-~--l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~-G~I~~~g~~i~~~~~~~r~ig~v~Q 79 (348)
T 3d31_A 4 IESLSRKWKNF-S--LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDS-GRILLDGKDVTDLSPEKHDIAFVYQ 79 (348)
T ss_dssp EEEEEEECSSC-E--EEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSE-EEEEETTEECTTSCHHHHTCEEECT
T ss_pred EEEEEEEECCE-E--EeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCC-cEEEECCEECCCCchhhCcEEEEec
Confidence 67999999764 4 999999999999999999999999999999999999872 33 344444
Q ss_pred CcccccCCCCccc--------------cccc-----------chhccCCCcchhHHHHHHHHHhhCCcEEEEcCCCCHHH
Q 019702 160 SNEIGGDGDIPHS--------------AIGT-----------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAE 214 (337)
Q Consensus 160 ~~ei~~~~~~~~~--------------~~~~-----------~~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~~ld 214 (337)
...+.....+.++ .+.. .+....+|+|||||++||+||+.+|++|+|||||+++|
T Consensus 80 ~~~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD 159 (348)
T 3d31_A 80 NYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALD 159 (348)
T ss_dssp TCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSC
T ss_pred CcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCC
Confidence 3322110000000 0000 12344579999999999999999999999999999999
Q ss_pred H-------HHHHHHHh-cCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHhh
Q 019702 215 A-------HACRSIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARRC 268 (337)
Q Consensus 215 ~-------~~l~~~~~-~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~~ 268 (337)
. +.+.++.+ .|.|+|++||+.+++..+||+++ +|++|++++.|++++++..+
T Consensus 160 ~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~--vl~~G~i~~~g~~~~~~~~p 219 (348)
T 3d31_A 160 PRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIA--VVMDGKLIQVGKPEEIFEKP 219 (348)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEE--EESSSCEEEEECHHHHHSSC
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE--EEECCEEEEECCHHHHHhCc
Confidence 5 34555554 49999999999999999999999 99999999999999998753
No 20
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.97 E-value=1.2e-31 Score=245.99 Aligned_cols=165 Identities=15% Similarity=0.152 Sum_probs=131.7
Q ss_pred EeeEEEEEC-CccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCC-----CeEEEEcCCcccccC----
Q 019702 97 IVGLTCRVG-RAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ-----KRVVIVDTSNEIGGD---- 166 (337)
Q Consensus 97 i~~l~~r~~-~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~-----~~i~~v~~~~ei~~~---- 166 (337)
+++++++|+ ...+ ++++++.+++|++++|+||||||||||+++|+|+++|+.+ ..+.++++...+...
T Consensus 7 i~~l~~~y~~~~~v--l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~~~i~~v~q~~~~~~~~tv~ 84 (253)
T 2nq2_C 7 VENLGFYYQAENFL--FQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIGFVPQFFSSPFAYSVL 84 (253)
T ss_dssp EEEEEEEETTTTEE--EEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSCCCCSSCCBHH
T ss_pred EeeEEEEeCCCCeE--EEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEeccEEEEcCCCccCCCCCHH
Confidence 679999997 5444 9999999999999999999999999999999999998732 346788775443211
Q ss_pred -----CCC--------cccc----c-------cc----chhccCCCcchhHHHHHHHHHhhCCcEEEEcCCCCHHHH---
Q 019702 167 -----GDI--------PHSA----I-------GT----ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEA--- 215 (337)
Q Consensus 167 -----~~~--------~~~~----~-------~~----~~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~~ld~--- 215 (337)
... +... + +. .+....+|+||+||++||+||+.+|++||+||||+++|.
T Consensus 85 enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~ 164 (253)
T 2nq2_C 85 DIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQ 164 (253)
T ss_dssp HHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHH
T ss_pred HHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHH
Confidence 000 0000 0 00 123445899999999999999999999999999999995
Q ss_pred ----HHHHHHHhc-CCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHH
Q 019702 216 ----HACRSIAER-GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (337)
Q Consensus 216 ----~~l~~~~~~-G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~ 266 (337)
+.+.++.++ |.|||++||+.+++..+||+++ ++++|+ +..|++++++.
T Consensus 165 ~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~--~l~~G~-~~~g~~~~~~~ 217 (253)
T 2nq2_C 165 DIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTL--LLNKQN-FKFGETRNILT 217 (253)
T ss_dssp HHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEE--EEETTE-EEEEEHHHHCC
T ss_pred HHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEE--EEeCCe-EecCCHHHHhC
Confidence 345555555 9999999999999989999999 999999 99999988764
No 21
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.97 E-value=8.6e-32 Score=245.16 Aligned_cols=163 Identities=14% Similarity=0.148 Sum_probs=125.7
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEE-----------------EcC
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVI-----------------VDT 159 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~-----------------v~~ 159 (337)
+++++++|+. . ++++++.+++ ++++|+||||||||||+++|+|+++|+ .+.|.+ +++
T Consensus 4 ~~~l~~~y~~--~--l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~-~G~i~~~g~~~~~~~~~~~~i~~v~q 77 (240)
T 2onk_A 4 KVRAEKRLGN--F--RLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPD-RGEVRLNGADITPLPPERRGIGFVPQ 77 (240)
T ss_dssp EEEEEEEETT--E--EEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCS-EEEEEETTEECTTSCTTTSCCBCCCS
T ss_pred EEEEEEEeCC--E--EeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCC-ceEEEECCEECCcCchhhCcEEEEcC
Confidence 6799999964 3 8999999999 999999999999999999999999887 344432 222
Q ss_pred CcccccCCCCccc---------------cc-------cc----chhccCCCcchhHHHHHHHHHhhCCcEEEEcCCCCHH
Q 019702 160 SNEIGGDGDIPHS---------------AI-------GT----ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEA 213 (337)
Q Consensus 160 ~~ei~~~~~~~~~---------------~~-------~~----~~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~~l 213 (337)
...+.....+.++ .+ +. .+....+|+||+||++||+|++++|++|++||||+++
T Consensus 78 ~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPts~L 157 (240)
T 2onk_A 78 DYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAV 157 (240)
T ss_dssp SCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSC
T ss_pred CCccCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccC
Confidence 2111000000000 00 00 0223457999999999999999999999999999999
Q ss_pred HH-------HHHHHHHh-cCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHh
Q 019702 214 EA-------HACRSIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (337)
Q Consensus 214 d~-------~~l~~~~~-~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~ 267 (337)
|. +.+.++.+ .|.|||++||+++++..+||+++ ++++|+++..|++++++..
T Consensus 158 D~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~--~l~~G~i~~~g~~~~~~~~ 217 (240)
T 2onk_A 158 DLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVA--VMLNGRIVEKGKLKELFSA 217 (240)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEE--EEETTEEEEEECHHHHHHS
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE--EEECCEEEEECCHHHHHhC
Confidence 95 34555554 49999999999999999999999 9999999999999998753
No 22
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.97 E-value=7.9e-30 Score=244.67 Aligned_cols=215 Identities=16% Similarity=0.181 Sum_probs=167.4
Q ss_pred CCeeEEEEecCCccEEEEeCccCceeccCCCCCHHHHHHHHHHHh------cc---CC-CcceEecCc-eeEEEEEeeCC
Q 019702 26 GQLLEVILDLGRLPEARYLGEFGGKYLRSTEVSVEELEYAQSAVG------EF---GG-DNRAGIEGT-LHRISAIRSRK 94 (337)
Q Consensus 26 ~~~~ei~l~~g~~~~~~~~g~~~~~~~~~~~~t~~~l~~~~~~~~------~~---~~-~~~~~~~g~-~~rv~~~~~~~ 94 (337)
.++||||+..|.||.+|++|.+. .+...+++.+++..++..+- .+ .. |+++.+++. ++|++.+....
T Consensus 13 ~~aSDIhi~~~~~~~~ri~G~l~--~~~~~~~~~~~l~~~i~~i~~~~~~~~~~~~~~~d~~~~~~~~~r~Rv~~~~~~~ 90 (356)
T 3jvv_A 13 QGASDLHLSAGLPPMIRVDGDVR--RINLPPLEHKQVHALIYDIMNDKQRKDFEEFLETDFSFEVPGVARFRVNAFNQNR 90 (356)
T ss_dssp TTCSEEEEETTBCCEEEETTEEE--ECSSCCBCHHHHHHHHHHHCCHHHHHHHHHHSCEEEEEEETTTEEEEEEEEEETT
T ss_pred CCCceEEEECCCCEEEEECCEEE--EecCCCCCHHHHHHHHHHHhcHhhhhhhhhcCCeeEEEEcCCCcEEEEEEEeeCC
Confidence 67999999999999999999874 55567789999998875541 11 22 677777654 89999999999
Q ss_pred CcEeeEEEEECCccccchhhhhh-------cccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEcCCcccccCC
Q 019702 95 GAIVGLTCRVGRAVSGHIDMVYD-------LLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDG 167 (337)
Q Consensus 95 g~i~~l~~r~~~~~~~~~~~l~~-------~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~~~~ei~~~~ 167 (337)
|. ++++|+.......++.+.+ ...+|++++|+|||||||||||++|+|+++++.++++.+++++.++....
T Consensus 91 g~--~~~iR~~~~~~~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~ 168 (356)
T 3jvv_A 91 GA--GAVFRTIPSKVLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHES 168 (356)
T ss_dssp EE--EEEEEEECCSCCCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCC
T ss_pred Cc--EEEEEECCCCCCCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhc
Confidence 88 9999997665544555554 46788899999999999999999999999987678899888877764321
Q ss_pred CCcccccccchhccCCCcchhHHHHHHHHHhhCCcEEEEcCCCCHHHHHHHHHHHhcCCeEEEEEcCcchhHHhhchHHH
Q 019702 168 DIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRSIAERGVMLIGTAHGEWLENIIKNPILS 247 (337)
Q Consensus 168 ~~~~~~~~~~~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~~ld~~~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~ 247 (337)
. .....+...........-++++||+++||+|++|||++...++.+.+++++|++|++|+|+.+.+ ..++|++
T Consensus 169 ~-----~~~v~q~~~~~~~~~~~~~La~aL~~~PdvillDEp~d~e~~~~~~~~~~~G~~vl~t~H~~~~~-~~~dRli- 241 (356)
T 3jvv_A 169 K-----KCLVNQREVHRDTLGFSEALRSALREDPDIILVGEMRDLETIRLALTAAETGHLVFGTLHTTSAA-KTIDRVV- 241 (356)
T ss_dssp S-----SSEEEEEEBTTTBSCHHHHHHHHTTSCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEESCSSHH-HHHHHHH-
T ss_pred c-----ccceeeeeeccccCCHHHHHHHHhhhCcCEEecCCCCCHHHHHHHHHHHhcCCEEEEEEccChHH-HHHHHHh-
Confidence 0 00111122222234455699999999999999999998887888888889999999999999977 6789988
Q ss_pred HHhcC
Q 019702 248 DLIGG 252 (337)
Q Consensus 248 ~ll~~ 252 (337)
.|..
T Consensus 242 -~l~~ 245 (356)
T 3jvv_A 242 -DVFP 245 (356)
T ss_dssp -HTSC
T ss_pred -hhcC
Confidence 5543
No 23
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.97 E-value=1.5e-31 Score=248.62 Aligned_cols=165 Identities=17% Similarity=0.116 Sum_probs=128.6
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCe---------------------EE
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKR---------------------VV 155 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~---------------------i~ 155 (337)
+++++++|+...+ ++++++.+++|++++|+||||||||||+++|+|+++|+. +. +.
T Consensus 24 ~~~l~~~y~~~~v--L~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~-G~I~~~g~~~~~~~~~~~~~~~~i~ 100 (279)
T 2ihy_A 24 LDQIGRMKQGKTI--LKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATS-GTVNLFGKMPGKVGYSAETVRQHIG 100 (279)
T ss_dssp EEEEEEEETTEEE--EEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSE-EEEEETTBCCC---CCHHHHHTTEE
T ss_pred EEeEEEEECCEEE--EEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCC-eEEEECCEEcccccCCHHHHcCcEE
Confidence 7799999986544 999999999999999999999999999999999998872 23 34
Q ss_pred EEcCCcccccC-----------CCC--------ccc----cc-------cc----chhccCCCcchhHHHHHHHHHhhCC
Q 019702 156 IVDTSNEIGGD-----------GDI--------PHS----AI-------GT----ARRMQVPEPSLQHKVMIEAVENHMP 201 (337)
Q Consensus 156 ~v~~~~ei~~~-----------~~~--------~~~----~~-------~~----~~~~~~~S~g~k~r~~ia~al~~~P 201 (337)
++++...+.+. ... +.. .+ +. .+....+|+||+||++||+||+.+|
T Consensus 101 ~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~lAraL~~~p 180 (279)
T 2ihy_A 101 FVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMGQP 180 (279)
T ss_dssp EECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCC
T ss_pred EEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhCCC
Confidence 44332111000 000 000 00 00 1233457999999999999999999
Q ss_pred cEEEEcCCCCHHHH-------HHHHHHHhcCCeE--EEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHH
Q 019702 202 EVIIVDEIGTEAEA-------HACRSIAERGVML--IGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (337)
Q Consensus 202 ~vlilDEp~~~ld~-------~~l~~~~~~G~tv--i~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~ 266 (337)
++|||||||+++|. +.+.++.++|.|| |++||+++++..+||+++ +|++|+++..|++++++.
T Consensus 181 ~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~--~l~~G~i~~~g~~~~~~~ 252 (279)
T 2ihy_A 181 QVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKIL--LLKDGQSIQQGAVEDILT 252 (279)
T ss_dssp SEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEE--EEETTEEEEEEEHHHHCS
T ss_pred CEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEE--EEECCEEEEECCHHHHhc
Confidence 99999999999995 3455665569999 999999999989999999 999999999999998764
No 24
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.97 E-value=4.1e-31 Score=241.67 Aligned_cols=165 Identities=19% Similarity=0.221 Sum_probs=126.9
Q ss_pred EeeEEEEEC--CccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCC------------------CeEEE
Q 019702 97 IVGLTCRVG--RAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ------------------KRVVI 156 (337)
Q Consensus 97 i~~l~~r~~--~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~------------------~~i~~ 156 (337)
+++++++|. ... .++++++.+++|++++|+||||||||||+++|+|+++|+.+ ..+.+
T Consensus 10 ~~~l~~~y~~~~~~--vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i~~ 87 (247)
T 2ff7_A 10 FRNIRFRYKPDSPV--ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGV 87 (247)
T ss_dssp EEEEEEESSTTSCE--EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEE
T ss_pred EEEEEEEeCCCCcc--eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcEEE
Confidence 679999993 333 49999999999999999999999999999999999988721 13555
Q ss_pred EcCCcccccC-------CC---Cccccc-------cc---ch------------hccCCCcchhHHHHHHHHHhhCCcEE
Q 019702 157 VDTSNEIGGD-------GD---IPHSAI-------GT---AR------------RMQVPEPSLQHKVMIEAVENHMPEVI 204 (337)
Q Consensus 157 v~~~~ei~~~-------~~---~~~~~~-------~~---~~------------~~~~~S~g~k~r~~ia~al~~~P~vl 204 (337)
+++...+... .. .....+ +. .. ....+|+||+||++||+||+++|++|
T Consensus 88 v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~ll 167 (247)
T 2ff7_A 88 VLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKIL 167 (247)
T ss_dssp ECSSCCCTTSBHHHHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCSEE
T ss_pred EeCCCccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 5554332110 00 000000 00 01 12468999999999999999999999
Q ss_pred EEcCCCCHHHH-------HHHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHh
Q 019702 205 IVDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (337)
Q Consensus 205 ilDEp~~~ld~-------~~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~ 267 (337)
||||||+++|. +.+.++ .+|.|||++||+++.+. .||+++ +|++|++++.|++++++..
T Consensus 168 lLDEPts~LD~~~~~~i~~~l~~~-~~g~tviivtH~~~~~~-~~d~v~--~l~~G~i~~~g~~~~l~~~ 233 (247)
T 2ff7_A 168 IFDEATSALDYESEHVIMRNMHKI-CKGRTVIIIAHRLSTVK-NADRII--VMEKGKIVEQGKHKELLSE 233 (247)
T ss_dssp EECCCCSCCCHHHHHHHHHHHHHH-HTTSEEEEECSSGGGGT-TSSEEE--EEETTEEEEEECHHHHHTS
T ss_pred EEeCCcccCCHHHHHHHHHHHHHH-cCCCEEEEEeCCHHHHH-hCCEEE--EEECCEEEEECCHHHHHhC
Confidence 99999999995 344555 35899999999999886 499999 9999999999999988753
No 25
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.97 E-value=6.9e-31 Score=242.67 Aligned_cols=169 Identities=16% Similarity=0.175 Sum_probs=131.5
Q ss_pred EeeEEEEEC-Ccc--ccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCC---------------CeEEEEc
Q 019702 97 IVGLTCRVG-RAV--SGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ---------------KRVVIVD 158 (337)
Q Consensus 97 i~~l~~r~~-~~~--~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~---------------~~i~~v~ 158 (337)
+++++++|+ ... ..+++++++.+++|++++|+||||||||||+++|+|+++|+.+ ..+.++.
T Consensus 5 ~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~i~~v~ 84 (266)
T 2yz2_A 5 VVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIGIAF 84 (266)
T ss_dssp EEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHHHHGGGEEEEC
T ss_pred EEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchHHhhhhEEEEe
Confidence 679999997 221 2249999999999999999999999999999999999988721 1356676
Q ss_pred CCc-ccccC---------C--C-Ccccc-----------ccc------chhccCCCcchhHHHHHHHHHhhCCcEEEEcC
Q 019702 159 TSN-EIGGD---------G--D-IPHSA-----------IGT------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDE 208 (337)
Q Consensus 159 ~~~-ei~~~---------~--~-~~~~~-----------~~~------~~~~~~~S~g~k~r~~ia~al~~~P~vlilDE 208 (337)
+.. ...+. . . .+... ++. .+....+|+||+||++||+||+++|++||+||
T Consensus 85 q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDE 164 (266)
T 2yz2_A 85 QYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDE 164 (266)
T ss_dssp SSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEES
T ss_pred ccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEcC
Confidence 653 11110 0 0 11100 010 12234589999999999999999999999999
Q ss_pred CCCHHHH-------HHHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHh
Q 019702 209 IGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (337)
Q Consensus 209 p~~~ld~-------~~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~ 267 (337)
||+++|. +.+.++.++|.|||++||+++.+..+||+++ ++++|+++..|++++++..
T Consensus 165 Pts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~~~d~v~--~l~~G~i~~~g~~~~~~~~ 228 (266)
T 2yz2_A 165 PLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVV--VLEKGKKVFDGTRMEFLEK 228 (266)
T ss_dssp TTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGGGCSEEE--EEETTEEEEEEEHHHHHHH
T ss_pred ccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEE--EEECCEEEEeCCHHHHhcC
Confidence 9999995 3455665569999999999999988999999 9999999999999998764
No 26
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.97 E-value=6.5e-31 Score=239.73 Aligned_cols=164 Identities=14% Similarity=0.108 Sum_probs=126.1
Q ss_pred EeeEEEEE-CCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeE-------------------EE
Q 019702 97 IVGLTCRV-GRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRV-------------------VI 156 (337)
Q Consensus 97 i~~l~~r~-~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i-------------------~~ 156 (337)
+++++++| +... .++++++.+++|++++|+||||||||||+++|+|+++|+. +.| .+
T Consensus 4 ~~~l~~~y~~~~~--vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~-G~i~~~g~~~~~~~~~~~~~~i~~ 80 (243)
T 1mv5_A 4 ARHVDFAYDDSEQ--ILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTA-GEITIDGQPIDNISLENWRSQIGF 80 (243)
T ss_dssp EEEEEECSSSSSC--SEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSB-SCEEETTEESTTTSCSCCTTTCCE
T ss_pred EEEEEEEeCCCCc--eEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCC-cEEEECCEEhhhCCHHHHHhhEEE
Confidence 67899999 4333 4999999999999999999999999999999999998873 333 33
Q ss_pred EcCCcccccC-------CC----Cccccc-------cc---c------------hhccCCCcchhHHHHHHHHHhhCCcE
Q 019702 157 VDTSNEIGGD-------GD----IPHSAI-------GT---A------------RRMQVPEPSLQHKVMIEAVENHMPEV 203 (337)
Q Consensus 157 v~~~~ei~~~-------~~----~~~~~~-------~~---~------------~~~~~~S~g~k~r~~ia~al~~~P~v 203 (337)
+++...+... .. .....+ +. . +....+|+||+||++||+|++++|++
T Consensus 81 v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~l 160 (243)
T 1mv5_A 81 VSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKI 160 (243)
T ss_dssp ECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSE
T ss_pred EcCCCccccccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCE
Confidence 3333221100 00 000000 00 0 11246899999999999999999999
Q ss_pred EEEcCCCCHHH-------HHHHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHh
Q 019702 204 IIVDEIGTEAE-------AHACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (337)
Q Consensus 204 lilDEp~~~ld-------~~~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~ 267 (337)
|++||||+++| .+.+.++. +|.|||++||+.+.+. .||+++ +|++|+++..|++++++..
T Consensus 161 llLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~-~~d~v~--~l~~G~i~~~g~~~~~~~~ 227 (243)
T 1mv5_A 161 LMLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRLSTIV-DADKIY--FIEKGQITGSGKHNELVAT 227 (243)
T ss_dssp EEEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSHHHHH-HCSEEE--EEETTEECCCSCHHHHHHH
T ss_pred EEEECCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCChHHHH-hCCEEE--EEECCEEEEeCCHHHHHhc
Confidence 99999999999 35566665 5999999999999775 599999 9999999999999998753
No 27
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.96 E-value=6.3e-31 Score=243.55 Aligned_cols=168 Identities=15% Similarity=0.119 Sum_probs=128.0
Q ss_pred EeeEEEEECCc-cccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCC------------------CeEEEE
Q 019702 97 IVGLTCRVGRA-VSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ------------------KRVVIV 157 (337)
Q Consensus 97 i~~l~~r~~~~-~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~------------------~~i~~v 157 (337)
+++++++|+.. ....++++++.+++|++++|+|||||||||||++|+|+++|+.+ ..+.++
T Consensus 19 ~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v 98 (271)
T 2ixe_A 19 FQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAV 98 (271)
T ss_dssp EEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHHEEEE
T ss_pred EEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhccEEEE
Confidence 67999999751 12349999999999999999999999999999999999988721 135566
Q ss_pred cCCcccccC----------CCCcc-cc---------c---------cc----chhccCCCcchhHHHHHHHHHhhCCcEE
Q 019702 158 DTSNEIGGD----------GDIPH-SA---------I---------GT----ARRMQVPEPSLQHKVMIEAVENHMPEVI 204 (337)
Q Consensus 158 ~~~~ei~~~----------~~~~~-~~---------~---------~~----~~~~~~~S~g~k~r~~ia~al~~~P~vl 204 (337)
++...+... ..... .. + +. .+....+|+||+||++||+||+.+|++|
T Consensus 99 ~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~~p~ll 178 (271)
T 2ixe_A 99 GQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLL 178 (271)
T ss_dssp CSSCCCCSSBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTTCCSEE
T ss_pred ecCCccccccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 654332110 00000 00 0 00 1234468999999999999999999999
Q ss_pred EEcCCCCHHHHH-------HHHHHHh-cCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHh
Q 019702 205 IVDEIGTEAEAH-------ACRSIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (337)
Q Consensus 205 ilDEp~~~ld~~-------~l~~~~~-~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~ 267 (337)
||||||+++|.. .+.++.+ .|.|||++||+++.+. .||+++ +|++|+++..|++++++..
T Consensus 179 lLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~-~~d~v~--~l~~G~i~~~g~~~~l~~~ 246 (271)
T 2ixe_A 179 ILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAE-RAHHIL--FLKEGSVCEQGTHLQLMER 246 (271)
T ss_dssp EEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHT-TCSEEE--EEETTEEEEEECHHHHHHH
T ss_pred EEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHH-hCCEEE--EEECCEEEEECCHHHHHhC
Confidence 999999999953 3444433 4899999999999876 499999 9999999999999998754
No 28
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.96 E-value=2.1e-30 Score=234.30 Aligned_cols=167 Identities=10% Similarity=0.006 Sum_probs=127.9
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCC-----CeEEEEcCCcccccC-----
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ-----KRVVIVDTSNEIGGD----- 166 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~-----~~i~~v~~~~ei~~~----- 166 (337)
+++++++|+......++++++.+++|++++|+||||||||||+++|+|+++|+.+ +++.++++...+...
T Consensus 9 ~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~i~~v~q~~~~~~~tv~en 88 (229)
T 2pze_A 9 MENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIMPGTIKEN 88 (229)
T ss_dssp EEEEEECSSTTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSSCCCCSBCHHHH
T ss_pred EEEEEEEeCCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECCEEEEEecCCcccCCCHHHH
Confidence 6789999963222359999999999999999999999999999999999998732 346677765443210
Q ss_pred ---C-CCcccc-------ccc---c------------hhccCCCcchhHHHHHHHHHhhCCcEEEEcCCCCHHHHHH---
Q 019702 167 ---G-DIPHSA-------IGT---A------------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA--- 217 (337)
Q Consensus 167 ---~-~~~~~~-------~~~---~------------~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~~ld~~~--- 217 (337)
. ...... ... . +....+|+||+||++||+|++.+|++|++||||+++|...
T Consensus 89 l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~ 168 (229)
T 2pze_A 89 IIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKE 168 (229)
T ss_dssp HHTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHH
T ss_pred hhccCCcChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHH
Confidence 0 000000 000 0 0125789999999999999999999999999999999643
Q ss_pred HHHH-H---hcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHH
Q 019702 218 CRSI-A---ERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (337)
Q Consensus 218 l~~~-~---~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~ 266 (337)
+.++ . ..|.|||++||+.+++. .||+++ ++++|+++..|+++++..
T Consensus 169 i~~~l~~~~~~~~tvi~vtH~~~~~~-~~d~v~--~l~~G~i~~~g~~~~~~~ 218 (229)
T 2pze_A 169 IFESCVCKLMANKTRILVTSKMEHLK-KADKIL--ILHEGSSYFYGTFSELQN 218 (229)
T ss_dssp HHHHCCCCCTTTSEEEEECCCHHHHH-HCSEEE--EEETTEEEEEECHHHHHT
T ss_pred HHHHHHHHhhCCCEEEEEcCChHHHH-hCCEEE--EEECCEEEEECCHHHHHh
Confidence 3332 1 24789999999998875 599999 999999999999998865
No 29
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.96 E-value=2e-30 Score=235.64 Aligned_cols=168 Identities=13% Similarity=0.125 Sum_probs=129.0
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCC-----CeEEEEcCCcccccC-----
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ-----KRVVIVDTSNEIGGD----- 166 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~-----~~i~~v~~~~ei~~~----- 166 (337)
+++++++|+......++++++.+++|++++|+||||||||||+++|+|+++|+.+ +.+.++++...+...
T Consensus 6 ~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~i~~v~Q~~~~~~~tv~en 85 (237)
T 2cbz_A 6 VRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKGSVAYVPQQAWIQNDSLREN 85 (237)
T ss_dssp EEEEEEESCTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECSCEEEECSSCCCCSEEHHHH
T ss_pred EEEEEEEeCCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEEEEcCCCcCCCcCHHHH
Confidence 6799999974222349999999999999999999999999999999999998732 246677765432110
Q ss_pred ----CCCcccc-------cc---------------cchhccCCCcchhHHHHHHHHHhhCCcEEEEcCCCCHHHHHH---
Q 019702 167 ----GDIPHSA-------IG---------------TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA--- 217 (337)
Q Consensus 167 ----~~~~~~~-------~~---------------~~~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~~ld~~~--- 217 (337)
....... .. ..+....+|+||+||++||+|++.+|++||+||||+++|...
T Consensus 86 l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~ 165 (237)
T 2cbz_A 86 ILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKH 165 (237)
T ss_dssp HHTTSCCCTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHH
T ss_pred hhCccccCHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHH
Confidence 0000000 00 012345689999999999999999999999999999999643
Q ss_pred HHHHH------hcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHh
Q 019702 218 CRSIA------ERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (337)
Q Consensus 218 l~~~~------~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~ 267 (337)
+.++. .+|.|||++||+.+.+. .||+++ ++++|+++..|++++++..
T Consensus 166 i~~~l~~~~~~~~~~tviivtH~~~~~~-~~d~v~--~l~~G~i~~~g~~~~~~~~ 218 (237)
T 2cbz_A 166 IFENVIGPKGMLKNKTRILVTHSMSYLP-QVDVII--VMSGGKISEMGSYQELLAR 218 (237)
T ss_dssp HHHHTTSTTSTTTTSEEEEECSCSTTGG-GSSEEE--EEETTEEEEEECHHHHHHH
T ss_pred HHHHHHHHHhhcCCCEEEEEecChHHHH-hCCEEE--EEeCCEEEEeCCHHHHhhc
Confidence 22221 24899999999999875 699999 9999999999999998753
No 30
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.96 E-value=6.4e-31 Score=247.20 Aligned_cols=166 Identities=18% Similarity=0.161 Sum_probs=127.7
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCC------------------CeEEEEc
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ------------------KRVVIVD 158 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~------------------~~i~~v~ 158 (337)
+++++++|+... .+++++++.+++|++++|+||||||||||+++|+|++.|+.+ ..+.+++
T Consensus 56 ~~~vs~~y~~~~-~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~ 134 (306)
T 3nh6_A 56 FENVHFSYADGR-ETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVP 134 (306)
T ss_dssp EEEEEEESSTTC-EEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEEC
T ss_pred EEEEEEEcCCCC-ceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEe
Confidence 669999996432 259999999999999999999999999999999999998721 1356666
Q ss_pred CCcccccC-------CCCcc---ccccc----------c------------hhccCCCcchhHHHHHHHHHhhCCcEEEE
Q 019702 159 TSNEIGGD-------GDIPH---SAIGT----------A------------RRMQVPEPSLQHKVMIEAVENHMPEVIIV 206 (337)
Q Consensus 159 ~~~ei~~~-------~~~~~---~~~~~----------~------------~~~~~~S~g~k~r~~ia~al~~~P~vlil 206 (337)
|...+... ...+. ..+.. . ++...+|+||+||++|||||+.+|++|||
T Consensus 135 Q~~~lf~~Tv~eNi~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlL 214 (306)
T 3nh6_A 135 QDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILL 214 (306)
T ss_dssp SSCCCCSEEHHHHHHTTSTTCCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEE
T ss_pred cCCccCcccHHHHHHhhcccCCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 65433210 00000 00000 0 11235899999999999999999999999
Q ss_pred cCCCCHHHHH-------HHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHh
Q 019702 207 DEIGTEAEAH-------ACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (337)
Q Consensus 207 DEp~~~ld~~-------~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~ 267 (337)
||||+++|.. .+..+ ..+.|+|++||+++.+.. ||+++ +|++|++++.|++++++..
T Consensus 215 DEPts~LD~~~~~~i~~~l~~l-~~~~Tvi~itH~l~~~~~-aD~i~--vl~~G~iv~~G~~~el~~~ 278 (306)
T 3nh6_A 215 DEATSALDTSNERAIQASLAKV-CANRTTIVVAHRLSTVVN-ADQIL--VIKDGCIVERGRHEALLSR 278 (306)
T ss_dssp ECCSSCCCHHHHHHHHHHHHHH-HTTSEEEEECCSHHHHHT-CSEEE--EEETTEEEEEECHHHHHHH
T ss_pred ECCcccCCHHHHHHHHHHHHHH-cCCCEEEEEEcChHHHHc-CCEEE--EEECCEEEEECCHHHHHhc
Confidence 9999999953 33343 347899999999998865 99999 9999999999999998864
No 31
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.96 E-value=9.1e-31 Score=239.75 Aligned_cols=162 Identities=14% Similarity=0.117 Sum_probs=119.0
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHcc--ccccCCCeEEE------------------
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARV--LSDEFQKRVVI------------------ 156 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gl--l~~~~~~~i~~------------------ 156 (337)
+++++++|+...+ ++++++.+++|++++|+||||||||||+++|+|+ ++|+ .+.|.+
T Consensus 6 ~~~l~~~y~~~~v--l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~-~G~I~~~g~~~~~~~~~~~~~~~i 82 (250)
T 2d2e_A 6 IRDLWASIDGETI--LKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVE-RGEILLDGENILELSPDERARKGL 82 (250)
T ss_dssp EEEEEEEETTEEE--EEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEE-EEEEEETTEECTTSCHHHHHHTTB
T ss_pred EEeEEEEECCEEE--EeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC-ceEEEECCEECCCCCHHHHHhCcE
Confidence 6799999976544 9999999999999999999999999999999998 6665 233332
Q ss_pred --EcCCcccccCC--------------C--Cc-c---ccc-------cc-----chhccC-CCcchhHHHHHHHHHhhCC
Q 019702 157 --VDTSNEIGGDG--------------D--IP-H---SAI-------GT-----ARRMQV-PEPSLQHKVMIEAVENHMP 201 (337)
Q Consensus 157 --v~~~~ei~~~~--------------~--~~-~---~~~-------~~-----~~~~~~-~S~g~k~r~~ia~al~~~P 201 (337)
+++...+.... . .. . ..+ +. .+.... +|+||+||++||+||+++|
T Consensus 83 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~~p 162 (250)
T 2d2e_A 83 FLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLEP 162 (250)
T ss_dssp CCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHHHCC
T ss_pred EEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHcCC
Confidence 22221110000 0 00 0 000 00 122345 9999999999999999999
Q ss_pred cEEEEcCCCCHHHH-------HHHHHHHhcCCeEEEEEcCcchhHHh-hchHHHHHhcCceEEEecCHHH
Q 019702 202 EVIIVDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENII-KNPILSDLIGGVDTVTLGDEEA 263 (337)
Q Consensus 202 ~vlilDEp~~~ld~-------~~l~~~~~~G~tvi~t~H~~~~~~~~-~d~v~~~ll~~G~iv~~g~~~~ 263 (337)
++||+||||+++|. +.+.++.+.|.|||++||+.+++..+ ||+++ +|++|+++..|+++.
T Consensus 163 ~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~--~l~~G~i~~~g~~~~ 230 (250)
T 2d2e_A 163 TYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVH--VMMDGRVVATGGPEL 230 (250)
T ss_dssp SEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEE--EEETTEEEEEESHHH
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEE--EEECCEEEEEeCHHH
Confidence 99999999999995 33455545689999999999988888 59999 999999999999873
No 32
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.96 E-value=2.9e-30 Score=236.30 Aligned_cols=161 Identities=13% Similarity=0.170 Sum_probs=125.5
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCC------------------eEEEEc
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK------------------RVVIVD 158 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~------------------~i~~v~ 158 (337)
+++++++ . .++++++.+++|++++|+||||||||||+++|+|+++|+ +. .+.+++
T Consensus 7 ~~~l~~~----~--vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~~v~ 79 (249)
T 2qi9_C 7 LQDVAES----T--RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRAYLS 79 (249)
T ss_dssp EEEEEET----T--TEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEEEEC
T ss_pred EEceEEE----E--EEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceEEEEC
Confidence 5677765 2 489999999999999999999999999999999999886 31 244555
Q ss_pred CCcccccC---------CCCc---cccc-------cc----chhccCCCcchhHHHHHHHHHhhCCc-------EEEEcC
Q 019702 159 TSNEIGGD---------GDIP---HSAI-------GT----ARRMQVPEPSLQHKVMIEAVENHMPE-------VIIVDE 208 (337)
Q Consensus 159 ~~~ei~~~---------~~~~---~~~~-------~~----~~~~~~~S~g~k~r~~ia~al~~~P~-------vlilDE 208 (337)
+...+... ...+ ...+ +. .+....+|+||+||++||+|++.+|+ +|||||
T Consensus 80 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDE 159 (249)
T 2qi9_C 80 QQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDE 159 (249)
T ss_dssp SCCCCCTTCBHHHHHHTTCSSTTCHHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESS
T ss_pred CCCccCCCCcHHHHHHHhhccCCcHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEEC
Confidence 44332110 0000 0000 00 12344689999999999999999999 999999
Q ss_pred CCCHHHH-------HHHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHH
Q 019702 209 IGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (337)
Q Consensus 209 p~~~ld~-------~~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~ 266 (337)
||+++|. +.+.++.++|.|||++||+.+++..+||+++ ++++|++++.|++++++.
T Consensus 160 Pts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~d~v~--~l~~G~i~~~g~~~~~~~ 222 (249)
T 2qi9_C 160 PMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAW--LLKGGKMLASGRREEVLT 222 (249)
T ss_dssp TTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEE--EEETTEEEEEEEHHHHSC
T ss_pred CcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEE--EEECCEEEEeCCHHHHhc
Confidence 9999995 3455665569999999999999989999999 999999999999998864
No 33
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.96 E-value=3e-30 Score=238.49 Aligned_cols=166 Identities=15% Similarity=0.086 Sum_probs=125.3
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccc--cccCC-------------------CeEE
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVL--SDEFQ-------------------KRVV 155 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll--~~~~~-------------------~~i~ 155 (337)
+++++++|+...+ ++++++.+++|++++|+||||||||||+++|+|++ +|+.+ ..+.
T Consensus 23 ~~~l~~~y~~~~v--l~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~ 100 (267)
T 2zu0_C 23 IKDLHVSVEDKAI--LRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEGIF 100 (267)
T ss_dssp EEEEEEEETTEEE--EEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHHTEE
T ss_pred EEeEEEEECCEEE--EEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhCCEE
Confidence 7799999976544 99999999999999999999999999999999994 45411 1155
Q ss_pred EEcCCcccccC-----------------CC---Cccc----c-------ccc-----chhcc-CCCcchhHHHHHHHHHh
Q 019702 156 IVDTSNEIGGD-----------------GD---IPHS----A-------IGT-----ARRMQ-VPEPSLQHKVMIEAVEN 198 (337)
Q Consensus 156 ~v~~~~ei~~~-----------------~~---~~~~----~-------~~~-----~~~~~-~~S~g~k~r~~ia~al~ 198 (337)
++.+...+... .. .... . ++. .+... .+|+||+||++||+||+
T Consensus 101 ~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~iAraL~ 180 (267)
T 2zu0_C 101 MAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAV 180 (267)
T ss_dssp EECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHHHHHHHH
T ss_pred EEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHH
Confidence 55554321100 00 0000 0 000 01223 39999999999999999
Q ss_pred hCCcEEEEcCCCCHHHHH-------HHHHHHhcCCeEEEEEcCcchhHHh-hchHHHHHhcCceEEEecCHHHHHH
Q 019702 199 HMPEVIIVDEIGTEAEAH-------ACRSIAERGVMLIGTAHGEWLENII-KNPILSDLIGGVDTVTLGDEEARAR 266 (337)
Q Consensus 199 ~~P~vlilDEp~~~ld~~-------~l~~~~~~G~tvi~t~H~~~~~~~~-~d~v~~~ll~~G~iv~~g~~~~~~~ 266 (337)
.+|++|||||||+++|.. .+.+++++|.|||++||+++++..+ ||+++ ++++|+++..|+++++..
T Consensus 181 ~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~--~l~~G~i~~~g~~~~~~~ 254 (267)
T 2zu0_C 181 LEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVH--VLYQGRIVKSGDFTLVKQ 254 (267)
T ss_dssp HCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEE--EEETTEEEEEECTTHHHH
T ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEE--EEECCEEEEEcCHHHHhh
Confidence 999999999999999953 2333444589999999999988776 89999 999999999999987653
No 34
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.96 E-value=5.3e-30 Score=236.00 Aligned_cols=166 Identities=16% Similarity=0.210 Sum_probs=125.8
Q ss_pred EeeEEEEECCcc-ccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCC------------------CeEEEE
Q 019702 97 IVGLTCRVGRAV-SGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ------------------KRVVIV 157 (337)
Q Consensus 97 i~~l~~r~~~~~-~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~------------------~~i~~v 157 (337)
+++++++|+... ...++++++.+++|++++|+||||||||||+++|+|++++. + ..+.++
T Consensus 20 i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~-G~I~i~g~~i~~~~~~~~~~~i~~v 98 (260)
T 2ghi_A 20 FSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAE-GDIKIGGKNVNKYNRNSIRSIIGIV 98 (260)
T ss_dssp EEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGBCHHHHHTTEEEE
T ss_pred EEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCCC-eEEEECCEEhhhcCHHHHhccEEEE
Confidence 678999997531 23599999999999999999999999999999999998753 1 124555
Q ss_pred cCCcccccC--------CC--Cccccc-------ccc---------------hhccCCCcchhHHHHHHHHHhhCCcEEE
Q 019702 158 DTSNEIGGD--------GD--IPHSAI-------GTA---------------RRMQVPEPSLQHKVMIEAVENHMPEVII 205 (337)
Q Consensus 158 ~~~~ei~~~--------~~--~~~~~~-------~~~---------------~~~~~~S~g~k~r~~ia~al~~~P~vli 205 (337)
++...+... .. .....+ +.. +....+|+||+||++||+|++.+|++||
T Consensus 99 ~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lll 178 (260)
T 2ghi_A 99 PQDTILFNETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVI 178 (260)
T ss_dssp CSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCCSEEE
T ss_pred cCCCcccccCHHHHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCCCEEE
Confidence 554322110 00 000000 000 1234689999999999999999999999
Q ss_pred EcCCCCHHHHH-------HHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHh
Q 019702 206 VDEIGTEAEAH-------ACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (337)
Q Consensus 206 lDEp~~~ld~~-------~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~ 267 (337)
+||||+++|.. .+.++. +|.|||++||+++.+. .||+++ +|++|+++..|++++++..
T Consensus 179 LDEPts~LD~~~~~~i~~~l~~l~-~~~tviivtH~~~~~~-~~d~i~--~l~~G~i~~~g~~~~l~~~ 243 (260)
T 2ghi_A 179 FDEATSSLDSKTEYLFQKAVEDLR-KNRTLIIIAHRLSTIS-SAESII--LLNKGKIVEKGTHKDLLKL 243 (260)
T ss_dssp EECCCCTTCHHHHHHHHHHHHHHT-TTSEEEEECSSGGGST-TCSEEE--EEETTEEEEEECHHHHHHH
T ss_pred EECccccCCHHHHHHHHHHHHHhc-CCCEEEEEcCCHHHHH-hCCEEE--EEECCEEEEECCHHHHHhc
Confidence 99999999953 344443 4899999999999875 599999 9999999999999998753
No 35
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.96 E-value=5.1e-30 Score=248.36 Aligned_cols=167 Identities=11% Similarity=0.086 Sum_probs=124.8
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCC-------------------eEEEE
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK-------------------RVVIV 157 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~-------------------~i~~v 157 (337)
+++++++|......+++++++.+++|++++|+|||||||||||++|+|+++ + .+ .+.++
T Consensus 22 ~~~l~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~-~G~I~i~G~~i~~~~~~~~rr~ig~v 99 (390)
T 3gd7_A 22 VKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-T-EGEIQIDGVSWDSITLEQWRKAFGVI 99 (390)
T ss_dssp EEEEEEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-E-EEEEEESSCBTTSSCHHHHHHTEEEE
T ss_pred EEEEEEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-C-CeEEEECCEECCcCChHHHhCCEEEE
Confidence 679999995322235999999999999999999999999999999999987 4 23 34455
Q ss_pred cCCcccccC---------CCCccccccc-----------chhccC-----------CCcchhHHHHHHHHHhhCCcEEEE
Q 019702 158 DTSNEIGGD---------GDIPHSAIGT-----------ARRMQV-----------PEPSLQHKVMIEAVENHMPEVIIV 206 (337)
Q Consensus 158 ~~~~ei~~~---------~~~~~~~~~~-----------~~~~~~-----------~S~g~k~r~~ia~al~~~P~vlil 206 (337)
+|...+... .......+.. .+.... +|+|||||++||+||+.+|++|||
T Consensus 100 ~Q~~~lf~~tv~enl~~~~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~lLLL 179 (390)
T 3gd7_A 100 PQKVFIFSGTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLL 179 (390)
T ss_dssp SCCCCCCSEEHHHHHCTTCCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred cCCcccCccCHHHHhhhccccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 544322110 0000000000 011222 899999999999999999999999
Q ss_pred cCCCCHHHHHHH----HHHH--hcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHhh
Q 019702 207 DEIGTEAEAHAC----RSIA--ERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARRC 268 (337)
Q Consensus 207 DEp~~~ld~~~l----~~~~--~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~~ 268 (337)
||||+++|...- ..+. ..|.|+|++||+.+.+ ..||+++ +|++|++++.|+|++++..+
T Consensus 180 DEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtHd~e~~-~~aDri~--vl~~G~i~~~g~~~el~~~p 244 (390)
T 3gd7_A 180 DEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAM-LECDQFL--VIEENKVRQYDSILELYHYP 244 (390)
T ss_dssp ESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECSSSGGG-TTCSEEE--EEETTEEEEESSHHHHHHCC
T ss_pred eCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcCHHHH-HhCCEEE--EEECCEEEEECCHHHHHhCC
Confidence 999999996432 1222 3478999999998755 4699999 99999999999999999864
No 36
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.96 E-value=8.5e-30 Score=234.94 Aligned_cols=162 Identities=18% Similarity=0.178 Sum_probs=122.9
Q ss_pred EeeEEEEECC----ccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCe----------------EE-
Q 019702 97 IVGLTCRVGR----AVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKR----------------VV- 155 (337)
Q Consensus 97 i~~l~~r~~~----~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~----------------i~- 155 (337)
+++++++|+. .. .++++++.++ |++++|+||||||||||+++|+|++ |+. +. +.
T Consensus 4 ~~~l~~~y~~~~~~~~--il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~-G~I~~~g~~~~~~~~~~~i~~ 78 (263)
T 2pjz_A 4 LKNVGITLSGKGYERF--SLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYS-GNIFINGMEVRKIRNYIRYST 78 (263)
T ss_dssp EEEEEEEEEEETTEEE--EEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCE-EEEEETTEEGGGCSCCTTEEE
T ss_pred EEEEEEEeCCCCccce--eEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCC-cEEEECCEECcchHHhhheEE
Confidence 6789999975 33 4999999999 9999999999999999999999999 872 33 33
Q ss_pred EEcCCcccccCC------------CCccc---------ccc---cchhccCCCcchhHHHHHHHHHhhCCcEEEEcCCCC
Q 019702 156 IVDTSNEIGGDG------------DIPHS---------AIG---TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGT 211 (337)
Q Consensus 156 ~v~~~~ei~~~~------------~~~~~---------~~~---~~~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~ 211 (337)
++++...+ ... ..... .+. ..+....+|+||+||++||+||+.+|++|+|||||+
T Consensus 79 ~v~Q~~~l-~~tv~enl~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts 157 (263)
T 2pjz_A 79 NLPEAYEI-GVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFE 157 (263)
T ss_dssp CCGGGSCT-TSBHHHHHHHHHHHTCCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTT
T ss_pred EeCCCCcc-CCcHHHHHHHhhhhcchHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCcc
Confidence 44333222 100 00000 000 012344689999999999999999999999999999
Q ss_pred HHHHHHHH----HHHhcCCeEEEEEcCcchhHHhhc-hHHHHHhcCceEEEecCHHHHHH
Q 019702 212 EAEAHACR----SIAERGVMLIGTAHGEWLENIIKN-PILSDLIGGVDTVTLGDEEARAR 266 (337)
Q Consensus 212 ~ld~~~l~----~~~~~G~tvi~t~H~~~~~~~~~d-~v~~~ll~~G~iv~~g~~~~~~~ 266 (337)
++|..... .+.+-..|||++||+++++..+|| +++ ++++|++++.|++++++.
T Consensus 158 ~LD~~~~~~l~~~L~~~~~tviivtHd~~~~~~~~d~~i~--~l~~G~i~~~g~~~~l~~ 215 (263)
T 2pjz_A 158 NVDAARRHVISRYIKEYGKEGILVTHELDMLNLYKEYKAY--FLVGNRLQGPISVSELLE 215 (263)
T ss_dssp TCCHHHHHHHHHHHHHSCSEEEEEESCGGGGGGCTTSEEE--EEETTEEEEEEEHHHHHT
T ss_pred ccCHHHHHHHHHHHHHhcCcEEEEEcCHHHHHHhcCceEE--EEECCEEEEecCHHHHHh
Confidence 99964322 222221299999999999989999 999 999999999999999875
No 37
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.96 E-value=1.6e-29 Score=226.38 Aligned_cols=150 Identities=13% Similarity=0.162 Sum_probs=115.8
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCC-------------CeEEEEcCCccc
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ-------------KRVVIVDTSNEI 163 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~-------------~~i~~v~~~~ei 163 (337)
+++++++|+. .+ ++++++.+++|++++|+|||||||||||++|+|+++|+.+ ..+.++++...+
T Consensus 13 ~~~ls~~y~~-~i--l~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~~v~q~~~~ 89 (214)
T 1sgw_A 13 IRDLSVGYDK-PV--LERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEEIIV 89 (214)
T ss_dssp EEEEEEESSS-EE--EEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSSCCC
T ss_pred EEEEEEEeCC-eE--EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEEEEeCCCcC
Confidence 6789999976 44 9999999999999999999999999999999999988721 135566654332
Q ss_pred ccCC-------------CCcc--ccc-------cc---chhccCCCcchhHHHHHHHHHhhCCcEEEEcCCCCHHHH---
Q 019702 164 GGDG-------------DIPH--SAI-------GT---ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEA--- 215 (337)
Q Consensus 164 ~~~~-------------~~~~--~~~-------~~---~~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~~ld~--- 215 (337)
.... .... ..+ +. .+....+|+||+||++||+|++.+|++||+||||+++|.
T Consensus 90 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD~~~~ 169 (214)
T 1sgw_A 90 PRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSK 169 (214)
T ss_dssp CTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTH
T ss_pred CCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcCCCcCCCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHH
Confidence 1100 0000 000 00 122345899999999999999999999999999999993
Q ss_pred ----HHHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhc
Q 019702 216 ----HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIG 251 (337)
Q Consensus 216 ----~~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~ 251 (337)
+.+.++.++|.|||++||+.+++..+||+++ +++
T Consensus 170 ~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~v~--~~~ 207 (214)
T 1sgw_A 170 HKVLKSILEILKEKGIVIISSREELSYCDVNENLH--KYS 207 (214)
T ss_dssp HHHHHHHHHHHHHHSEEEEEESSCCTTSSEEEEGG--GGB
T ss_pred HHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEE--EeC
Confidence 4566666668999999999999999999998 654
No 38
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.95 E-value=4.2e-28 Score=226.57 Aligned_cols=163 Identities=10% Similarity=0.011 Sum_probs=119.6
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCC-----CeEEEEcCCcccccC-----
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ-----KRVVIVDTSNEIGGD----- 166 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~-----~~i~~v~~~~ei~~~----- 166 (337)
++++++.+ .. .++++++.+++|++++|+||||||||||+++|+|+++|+.+ +++.++++...+...
T Consensus 43 ~~~l~~~~--~~--vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~i~~v~Q~~~l~~~tv~en 118 (290)
T 2bbs_A 43 FSNFSLLG--TP--VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQNSWIMPGTIKEN 118 (290)
T ss_dssp -------C--CC--SEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCSCEEEECSSCCCCSSBHHHH
T ss_pred EEEEEEcC--ce--EEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEEEEEeCCCccCcccHHHH
Confidence 55777753 22 48999999999999999999999999999999999998732 356778776543211
Q ss_pred --C-CCcccc-------ccc---ch------------hccCCCcchhHHHHHHHHHhhCCcEEEEcCCCCHHHHHH---H
Q 019702 167 --G-DIPHSA-------IGT---AR------------RMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA---C 218 (337)
Q Consensus 167 --~-~~~~~~-------~~~---~~------------~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~~ld~~~---l 218 (337)
. ...... .+. .. ....+|+||+||++||+|++.+|++||+||||+++|... +
T Consensus 119 l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i 198 (290)
T 2bbs_A 119 IIGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEI 198 (290)
T ss_dssp HHTTCCCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHH
T ss_pred hhCcccchHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHH
Confidence 0 000000 000 00 124689999999999999999999999999999999643 3
Q ss_pred HHH-H---hcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHH
Q 019702 219 RSI-A---ERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (337)
Q Consensus 219 ~~~-~---~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~ 266 (337)
.++ . ..|.|||++||+++.+. .||+++ +|++|+++..|++++++.
T Consensus 199 ~~~ll~~~~~~~tviivtHd~~~~~-~~d~i~--~l~~G~i~~~g~~~~l~~ 247 (290)
T 2bbs_A 199 FESCVCKLMANKTRILVTSKMEHLK-KADKIL--ILHEGSSYFYGTFSELQN 247 (290)
T ss_dssp HHHCCCCCTTTSEEEEECCCHHHHH-HSSEEE--EEETTEEEEEECHHHHHH
T ss_pred HHHHHHHhhCCCEEEEEecCHHHHH-cCCEEE--EEECCeEEEeCCHHHHhh
Confidence 232 1 24889999999999875 599999 999999999999999865
No 39
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.95 E-value=9.8e-28 Score=244.20 Aligned_cols=167 Identities=16% Similarity=0.200 Sum_probs=128.1
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCC------------------CeEEEEc
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ------------------KRVVIVD 158 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~------------------~~i~~v~ 158 (337)
+++++++|+......++++++.+++|+.++|+||||||||||+++|+|+++|+.| .++.+++
T Consensus 344 ~~~v~~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~ 423 (582)
T 3b5x_A 344 VKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVS 423 (582)
T ss_pred EEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcCeEEEc
Confidence 6799999975322359999999999999999999999999999999999998732 2355555
Q ss_pred CCcccccC--------C---CCccccccc----------c------------hhccCCCcchhHHHHHHHHHhhCCcEEE
Q 019702 159 TSNEIGGD--------G---DIPHSAIGT----------A------------RRMQVPEPSLQHKVMIEAVENHMPEVII 205 (337)
Q Consensus 159 ~~~ei~~~--------~---~~~~~~~~~----------~------------~~~~~~S~g~k~r~~ia~al~~~P~vli 205 (337)
|...+... + ......+.. . ++...+|||||||++||||+..+|++|+
T Consensus 424 Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~~p~ill 503 (582)
T 3b5x_A 424 QNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLI 503 (582)
T ss_pred CCCccccccHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHcCCCEEE
Confidence 54332110 0 000000000 0 1124689999999999999999999999
Q ss_pred EcCCCCHHHHH-------HHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHh
Q 019702 206 VDEIGTEAEAH-------ACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (337)
Q Consensus 206 lDEp~~~ld~~-------~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~ 267 (337)
+||||+++|.+ .+.++. +|.|+|++||+++.+. .||+++ ++++|++++.|++++++..
T Consensus 504 lDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~d~i~--~l~~G~i~~~g~~~~l~~~ 568 (582)
T 3b5x_A 504 LDEATSALDTESERAIQAALDELQ-KNKTVLVIAHRLSTIE-QADEIL--VVDEGEIIERGRHADLLAQ 568 (582)
T ss_pred EECccccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHHHH-hCCEEE--EEECCEEEEECCHHHHHhC
Confidence 99999999953 344443 4899999999999875 699999 9999999999999998753
No 40
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.95 E-value=2.8e-28 Score=248.03 Aligned_cols=166 Identities=16% Similarity=0.201 Sum_probs=129.3
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCC------------------CeEEEEc
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ------------------KRVVIVD 158 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~------------------~~i~~v~ 158 (337)
+++++++|+......++++++.+++|+.++|+||||||||||+++|+|+++|+.| .++.+++
T Consensus 342 ~~~v~~~y~~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i~~v~ 421 (578)
T 4a82_A 342 IDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQ 421 (578)
T ss_dssp EEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEEEEC
T ss_pred EEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhheEEEe
Confidence 6799999976444469999999999999999999999999999999999998731 1366666
Q ss_pred CCcccccCCCCccc-----------cccc----------------------chhccCCCcchhHHHHHHHHHhhCCcEEE
Q 019702 159 TSNEIGGDGDIPHS-----------AIGT----------------------ARRMQVPEPSLQHKVMIEAVENHMPEVII 205 (337)
Q Consensus 159 ~~~ei~~~~~~~~~-----------~~~~----------------------~~~~~~~S~g~k~r~~ia~al~~~P~vli 205 (337)
|...+... .+.++ .+.. .++...+|||||||++||||+..+|++|+
T Consensus 422 Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~p~ill 500 (578)
T 4a82_A 422 QDNILFSD-TVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILI 500 (578)
T ss_dssp SSCCCCSS-BHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSEEE
T ss_pred CCCccCcc-cHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHcCCCEEE
Confidence 65433211 11000 0000 01123589999999999999999999999
Q ss_pred EcCCCCHHHHH-------HHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHh
Q 019702 206 VDEIGTEAEAH-------ACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (337)
Q Consensus 206 lDEp~~~ld~~-------~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~ 267 (337)
+||||+++|.+ .+..+ .+|.|+|++||+++.+. .||+++ +|++|++++.|+++++...
T Consensus 501 lDEpts~LD~~~~~~i~~~l~~~-~~~~t~i~itH~l~~~~-~~d~i~--~l~~G~i~~~g~~~el~~~ 565 (578)
T 4a82_A 501 LDEATSALDLESESIIQEALDVL-SKDRTTLIVAHRLSTIT-HADKIV--VIENGHIVETGTHRELIAK 565 (578)
T ss_dssp EESTTTTCCHHHHHHHHHHHHHH-TTTSEEEEECSSGGGTT-TCSEEE--EEETTEEEEEECHHHHHHT
T ss_pred EECccccCCHHHHHHHHHHHHHH-cCCCEEEEEecCHHHHH-cCCEEE--EEECCEEEEECCHHHHHhC
Confidence 99999999953 23333 35789999999999875 599999 9999999999999998864
No 41
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.94 E-value=2.6e-28 Score=248.65 Aligned_cols=167 Identities=14% Similarity=0.148 Sum_probs=129.4
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCC------------------CeEEEEc
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ------------------KRVVIVD 158 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~------------------~~i~~v~ 158 (337)
+++++++|+......++++++.+++|+.++|+||||||||||+++|+|+++|+.+ +++.+++
T Consensus 344 ~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~ 423 (587)
T 3qf4_A 344 FENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVP 423 (587)
T ss_dssp EEEEEECSSSSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHHEEEEC
T ss_pred EEEEEEEcCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhheEEEC
Confidence 6689999975444469999999999999999999999999999999999998721 2355666
Q ss_pred CCcccccC-------CCCc---cccccc----------------------chhccCCCcchhHHHHHHHHHhhCCcEEEE
Q 019702 159 TSNEIGGD-------GDIP---HSAIGT----------------------ARRMQVPEPSLQHKVMIEAVENHMPEVIIV 206 (337)
Q Consensus 159 ~~~ei~~~-------~~~~---~~~~~~----------------------~~~~~~~S~g~k~r~~ia~al~~~P~vlil 206 (337)
|...+... ...+ ...+.. .++...+|||||||++||||+..+|++|++
T Consensus 424 Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~~p~illl 503 (587)
T 3qf4_A 424 QETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLIL 503 (587)
T ss_dssp SSCCCCSEEHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHTCCSEEEE
T ss_pred CCCcCcCccHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHcCCCEEEE
Confidence 65433210 0000 000000 012245799999999999999999999999
Q ss_pred cCCCCHHHHH-------HHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHh
Q 019702 207 DEIGTEAEAH-------ACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (337)
Q Consensus 207 DEp~~~ld~~-------~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~ 267 (337)
||||+++|.+ .+.++ .+|.|+|++||+++.+. .||+++ +|++|++++.|+++++...
T Consensus 504 DEpts~LD~~~~~~i~~~l~~~-~~~~tvi~itH~l~~~~-~~d~i~--vl~~G~i~~~g~~~el~~~ 567 (587)
T 3qf4_A 504 DDCTSSVDPITEKRILDGLKRY-TKGCTTFIITQKIPTAL-LADKIL--VLHEGKVAGFGTHKELLEH 567 (587)
T ss_dssp ESCCTTSCHHHHHHHHHHHHHH-STTCEEEEEESCHHHHT-TSSEEE--EEETTEEEEEECHHHHHHH
T ss_pred ECCcccCCHHHHHHHHHHHHHh-CCCCEEEEEecChHHHH-hCCEEE--EEECCEEEEECCHHHHHhC
Confidence 9999999953 23333 35899999999999875 899999 9999999999999998864
No 42
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.94 E-value=6.6e-28 Score=246.18 Aligned_cols=166 Identities=16% Similarity=0.177 Sum_probs=128.4
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCC------------------CeEEEEc
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ------------------KRVVIVD 158 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~------------------~~i~~v~ 158 (337)
+++++++|+... ..++++++.+++|+.++|+||||||||||+++|+|+++|+.| .++.+++
T Consensus 357 ~~~v~~~y~~~~-~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v~ 435 (598)
T 3qf4_B 357 FKNVWFSYDKKK-PVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVL 435 (598)
T ss_dssp EEEEECCSSSSS-CSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEEC
T ss_pred EEEEEEECCCCC-ccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhceEEEe
Confidence 668999997533 359999999999999999999999999999999999998732 1466666
Q ss_pred CCcccccC--------C--CCccccccc----------c------------hhccCCCcchhHHHHHHHHHhhCCcEEEE
Q 019702 159 TSNEIGGD--------G--DIPHSAIGT----------A------------RRMQVPEPSLQHKVMIEAVENHMPEVIIV 206 (337)
Q Consensus 159 ~~~ei~~~--------~--~~~~~~~~~----------~------------~~~~~~S~g~k~r~~ia~al~~~P~vlil 206 (337)
|...+... + ......+.. . ++...+|||||||++||||+..+|++|++
T Consensus 436 Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p~illl 515 (598)
T 3qf4_B 436 QDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILIL 515 (598)
T ss_dssp TTCCCCSSBHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCCSEEEE
T ss_pred CCCccccccHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 65433210 0 000000000 0 11135799999999999999999999999
Q ss_pred cCCCCHHHHH-------HHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHh
Q 019702 207 DEIGTEAEAH-------ACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (337)
Q Consensus 207 DEp~~~ld~~-------~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~ 267 (337)
||||+++|.. .+.++ .+|.|+|++||+++.+.. ||+++ ++++|++++.|+++++...
T Consensus 516 DEpts~LD~~~~~~i~~~l~~~-~~~~t~i~itH~l~~~~~-~d~i~--~l~~G~i~~~g~~~~l~~~ 579 (598)
T 3qf4_B 516 DEATSNVDTKTEKSIQAAMWKL-MEGKTSIIIAHRLNTIKN-ADLII--VLRDGEIVEMGKHDELIQK 579 (598)
T ss_dssp CCCCTTCCHHHHHHHHHHHHHH-HTTSEEEEESCCTTHHHH-CSEEE--EECSSSEEECSCHHHHHHT
T ss_pred ECCccCCCHHHHHHHHHHHHHH-cCCCEEEEEecCHHHHHc-CCEEE--EEECCEEEEECCHHHHHhC
Confidence 9999999953 34444 358999999999998754 99999 9999999999999998764
No 43
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.94 E-value=9.9e-28 Score=244.16 Aligned_cols=167 Identities=16% Similarity=0.167 Sum_probs=128.4
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCC------------------CeEEEEc
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ------------------KRVVIVD 158 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~------------------~~i~~v~ 158 (337)
+++++++|+......++++++.+++|+.++|+||||||||||+++|+|+++|+.| +++.+++
T Consensus 344 ~~~v~~~y~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~ 423 (582)
T 3b60_A 344 FRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVS 423 (582)
T ss_dssp EEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEEEEC
T ss_pred EEEEEEEcCCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhhCeEEc
Confidence 6799999974312359999999999999999999999999999999999998731 1356666
Q ss_pred CCcccccC--------CC---Cccccccc----------c------------hhccCCCcchhHHHHHHHHHhhCCcEEE
Q 019702 159 TSNEIGGD--------GD---IPHSAIGT----------A------------RRMQVPEPSLQHKVMIEAVENHMPEVII 205 (337)
Q Consensus 159 ~~~ei~~~--------~~---~~~~~~~~----------~------------~~~~~~S~g~k~r~~ia~al~~~P~vli 205 (337)
|...+... +. .....+.. . ++...+|||||||++||||+..+|++|+
T Consensus 424 Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~~p~ill 503 (582)
T 3b60_A 424 QNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILI 503 (582)
T ss_dssp SSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEE
T ss_pred cCCcCCCCCHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEE
Confidence 55433210 00 01000000 0 1224689999999999999999999999
Q ss_pred EcCCCCHHHHH-------HHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHh
Q 019702 206 VDEIGTEAEAH-------ACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (337)
Q Consensus 206 lDEp~~~ld~~-------~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~ 267 (337)
+||||+++|.+ .+.++. +|.|+|++||+++.+. .||+++ ++++|++++.|++++++..
T Consensus 504 lDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~d~i~--~l~~G~i~~~g~~~~l~~~ 568 (582)
T 3b60_A 504 LDEATSALDTESERAIQAALDELQ-KNRTSLVIAHRLSTIE-QADEIV--VVEDGIIVERGTHSELLAQ 568 (582)
T ss_dssp EETTTSSCCHHHHHHHHHHHHHHH-TTSEEEEECSCGGGTT-TCSEEE--EEETTEEEEEECHHHHHHH
T ss_pred EECccccCCHHHHHHHHHHHHHHh-CCCEEEEEeccHHHHH-hCCEEE--EEECCEEEEecCHHHHHHc
Confidence 99999999953 344443 4899999999999875 699999 9999999999999998763
No 44
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.94 E-value=2e-27 Score=242.42 Aligned_cols=166 Identities=14% Similarity=0.142 Sum_probs=125.5
Q ss_pred EeeEEEEECCc-cccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCC------------------CeEEEE
Q 019702 97 IVGLTCRVGRA-VSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ------------------KRVVIV 157 (337)
Q Consensus 97 i~~l~~r~~~~-~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~------------------~~i~~v 157 (337)
+++++++|+.. ....++++++.+++|+.++|+||||||||||+++|+|+++|+.| .++.++
T Consensus 344 ~~~v~~~y~~~~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v 423 (595)
T 2yl4_A 344 FKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTV 423 (595)
T ss_dssp EEEEEEECSSCTTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEETTTBCHHHHHHSEEEE
T ss_pred EEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCEEhhhCCHHHHHhceEEE
Confidence 67999999753 12359999999999999999999999999999999999988721 135666
Q ss_pred cCCcccccC-------CC------Cccccccc-c---------------------hhccCCCcchhHHHHHHHHHhhCCc
Q 019702 158 DTSNEIGGD-------GD------IPHSAIGT-A---------------------RRMQVPEPSLQHKVMIEAVENHMPE 202 (337)
Q Consensus 158 ~~~~ei~~~-------~~------~~~~~~~~-~---------------------~~~~~~S~g~k~r~~ia~al~~~P~ 202 (337)
+|...+... .. .....+.. . ++...+|||||||++||||+..+|+
T Consensus 424 ~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iAral~~~p~ 503 (595)
T 2yl4_A 424 SQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPK 503 (595)
T ss_dssp CSSCCCCSSBHHHHHHTTSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHHHHHHHCCS
T ss_pred ccCCcccCCCHHHHHhhcCCCccccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHHcCCC
Confidence 665433210 00 11110000 0 0114589999999999999999999
Q ss_pred EEEEcCCCCHHHHH-------HHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHH
Q 019702 203 VIIVDEIGTEAEAH-------ACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (337)
Q Consensus 203 vlilDEp~~~ld~~-------~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~ 266 (337)
+|++||||+++|.+ .+.++.+ |.|+|++||+++.+. .||+++ ++++|++++.|++++++.
T Consensus 504 illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~~~-~~d~i~--~l~~G~i~~~g~~~~l~~ 570 (595)
T 2yl4_A 504 ILLLDEATSALDAENEYLVQEALDRLMD-GRTVLVIAHRLSTIK-NANMVA--VLDQGKITEYGKHEELLS 570 (595)
T ss_dssp EEEEECCCSSCCHHHHHHHHHHHHHHHT-TSEEEEECCCHHHHH-HSSEEE--EEETTEEEEEECSCC---
T ss_pred EEEEECcccCCCHHHHHHHHHHHHHHhc-CCEEEEEecCHHHHH-cCCEEE--EEECCEEEEECCHHHHHh
Confidence 99999999999953 3444433 899999999999875 599999 999999999999998865
No 45
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.93 E-value=5e-27 Score=236.70 Aligned_cols=166 Identities=16% Similarity=0.149 Sum_probs=128.2
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCC-----CeEEEEcCCcccccCCCCcc
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ-----KRVVIVDTSNEIGGDGDIPH 171 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~-----~~i~~v~~~~ei~~~~~~~~ 171 (337)
+++++++|+.. .++.+++.+.+|++++|+||||||||||+++|+|+++|+.+ ..+.++++.........+..
T Consensus 290 ~~~l~~~~~~~---~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~~~i~~v~Q~~~~~~~~tv~~ 366 (538)
T 1yqt_A 290 YPRLVKDYGSF---RLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVAYKPQYIKADYEGTVYE 366 (538)
T ss_dssp ECCEEEEETTE---EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCCCCEEEECSSCCCCCSSBHHH
T ss_pred EeeEEEEECCE---EEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECceEEEEecCCcCCCCCcHHH
Confidence 45788888652 26777888999999999999999999999999999998743 35778877543311100000
Q ss_pred -------------cc----c---c----cchhccCCCcchhHHHHHHHHHhhCCcEEEEcCCCCHHHH-------HHHHH
Q 019702 172 -------------SA----I---G----TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEA-------HACRS 220 (337)
Q Consensus 172 -------------~~----~---~----~~~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~~ld~-------~~l~~ 220 (337)
.. + + ..+....+||||+||++||+||+.+|++|||||||+++|. +.+.+
T Consensus 367 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~ 446 (538)
T 1yqt_A 367 LLSKIDASKLNSNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRH 446 (538)
T ss_dssp HHHHHHHHHHTCHHHHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHH
T ss_pred HHHhhhccCCCHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 00 0 0 0133456899999999999999999999999999999995 34555
Q ss_pred HH-hcCCeEEEEEcCcchhHHhhchHHHHHhcC--ceEEEecCHHHHHHh
Q 019702 221 IA-ERGVMLIGTAHGEWLENIIKNPILSDLIGG--VDTVTLGDEEARARR 267 (337)
Q Consensus 221 ~~-~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~--G~iv~~g~~~~~~~~ 267 (337)
++ +.|.|||++|||++++..+||+++ +|++ |+++..|+|++++..
T Consensus 447 l~~~~g~tvi~vsHd~~~~~~~~drv~--vl~~~~~~~~~~g~~~~~~~~ 494 (538)
T 1yqt_A 447 LMEKNEKTALVVEHDVLMIDYVSDRLM--VFEGEPGKYGRALPPMGMREG 494 (538)
T ss_dssp HHHHHTCEEEEECSCHHHHHHHCSEEE--EEEEETTTEEEECCCEEHHHH
T ss_pred HHHhCCCEEEEEeCCHHHHHHhCCEEE--EEeCCcceEeecCCHHHHHhh
Confidence 54 459999999999999999999999 8875 788889999888753
No 46
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.93 E-value=6.2e-27 Score=238.75 Aligned_cols=166 Identities=16% Similarity=0.140 Sum_probs=128.8
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCC-----CeEEEEcCCcccccCCCCcc
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ-----KRVVIVDTSNEIGGDGDIPH 171 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~-----~~i~~v~~~~ei~~~~~~~~ 171 (337)
+++++++|+.. .++.+++.+.+|++++|+|||||||||||++|+|+++|+.+ .++.++++.........+..
T Consensus 360 ~~~l~~~~~~~---~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~~~i~~v~Q~~~~~~~~tv~e 436 (607)
T 3bk7_A 360 YPRLVKDYGSF---KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEGTVYE 436 (607)
T ss_dssp ECCEEEECSSC---EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCCCCEEEECSSCCCCCSSBHHH
T ss_pred EeceEEEecce---EEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEeeEEEEEecCccCCCCCcHHH
Confidence 45788888653 26777888999999999999999999999999999998743 35778877643321111100
Q ss_pred c-------------cc-------c----cchhccCCCcchhHHHHHHHHHhhCCcEEEEcCCCCHHHH-------HHHHH
Q 019702 172 S-------------AI-------G----TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEA-------HACRS 220 (337)
Q Consensus 172 ~-------------~~-------~----~~~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~~ld~-------~~l~~ 220 (337)
. .. + ..+....+||||+||++||+||+++|++|||||||+++|. +.+..
T Consensus 437 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~ 516 (607)
T 3bk7_A 437 LLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRH 516 (607)
T ss_dssp HHHHHHHHHHHCHHHHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHH
T ss_pred HHHhhhccCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHH
Confidence 0 00 0 0133456899999999999999999999999999999995 34555
Q ss_pred HH-hcCCeEEEEEcCcchhHHhhchHHHHHhcC--ceEEEecCHHHHHHh
Q 019702 221 IA-ERGVMLIGTAHGEWLENIIKNPILSDLIGG--VDTVTLGDEEARARR 267 (337)
Q Consensus 221 ~~-~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~--G~iv~~g~~~~~~~~ 267 (337)
+. +.|.|||++|||++++..+||+++ +|++ |+++..|+|++++..
T Consensus 517 l~~~~g~tvi~vsHd~~~~~~~adrv~--vl~~~~g~~~~~g~p~~~~~~ 564 (607)
T 3bk7_A 517 LMEKNEKTALVVEHDVLMIDYVSDRLI--VFEGEPGRHGRALPPMGMREG 564 (607)
T ss_dssp HHHHTTCEEEEECSCHHHHHHHCSEEE--EEEEETTTEEEECCCEEHHHH
T ss_pred HHHhCCCEEEEEeCCHHHHHHhCCEEE--EEcCCcceEEecCCHHHHHhh
Confidence 54 459999999999999999999999 8875 788889999988753
No 47
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.93 E-value=4.8e-27 Score=239.36 Aligned_cols=166 Identities=13% Similarity=0.149 Sum_probs=125.8
Q ss_pred EEEEECCccccchhhhhhcccCC-----CEEEEEcCCCCcHHHHHHHHHccccccCCC-----eEEEEcCCcccccCCCC
Q 019702 100 LTCRVGRAVSGHIDMVYDLLHYG-----KSILFVGRPGVGKTTVMREIARVLSDEFQK-----RVVIVDTSNEIGGDGDI 169 (337)
Q Consensus 100 l~~r~~~~~~~~~~~l~~~v~~g-----~~v~IiGpnGsGKTTLL~~l~gll~~~~~~-----~i~~v~~~~ei~~~~~~ 169 (337)
++++|.... ..++++++.+.+| ++++|+||||||||||+++|+|+++|+.+. .+.++++.....+...+
T Consensus 352 ~~~~y~~~~-~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~~~~~i~~~~q~~~~~~~~tv 430 (608)
T 3j16_B 352 RAFSYPSLK-KTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAPKFPGTV 430 (608)
T ss_dssp SCCEECCEE-EECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCCCCSCCEEEECSSCCCCCCSBH
T ss_pred eeEEecCcc-cccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcCccCCcEEEecccccccCCccH
Confidence 455665422 1366788887777 889999999999999999999999998542 46777664322111000
Q ss_pred c------------ccc-----c---c----cchhccCCCcchhHHHHHHHHHhhCCcEEEEcCCCCHHHH-------HHH
Q 019702 170 P------------HSA-----I---G----TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEA-------HAC 218 (337)
Q Consensus 170 ~------------~~~-----~---~----~~~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~~ld~-------~~l 218 (337)
. ... + + ..+....+||||+||++||+||+++|++||+||||+++|. +.+
T Consensus 431 ~e~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll 510 (608)
T 3j16_B 431 RQLFFKKIRGQFLNPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVI 510 (608)
T ss_dssp HHHHHHHCSSTTTSHHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHhhcccccHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHH
Confidence 0 000 0 0 0133557899999999999999999999999999999995 345
Q ss_pred HHHH-hcCCeEEEEEcCcchhHHhhchHHHHHhcC--ceEEEecCHHHHHHhh
Q 019702 219 RSIA-ERGVMLIGTAHGEWLENIIKNPILSDLIGG--VDTVTLGDEEARARRC 268 (337)
Q Consensus 219 ~~~~-~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~--G~iv~~g~~~~~~~~~ 268 (337)
.++. +.|.|||++|||++++..+||+++ +|++ |++++.|+|++++...
T Consensus 511 ~~l~~~~g~tviivtHdl~~~~~~aDrvi--vl~~~~g~~~~~g~p~~~~~~~ 561 (608)
T 3j16_B 511 RRFILHNKKTAFIVEHDFIMATYLADKVI--VFEGIPSKNAHARAPESLLTGC 561 (608)
T ss_dssp HHHHHHHTCEEEEECSCHHHHHHHCSEEE--ECEEETTTEEECCCCEEHHHHH
T ss_pred HHHHHhCCCEEEEEeCCHHHHHHhCCEEE--EEeCCCCeEEecCChHHHhhhh
Confidence 5554 569999999999999999999999 8886 8999999999998753
No 48
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.93 E-value=2.3e-26 Score=231.56 Aligned_cols=165 Identities=15% Similarity=0.156 Sum_probs=121.9
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCC------CeEEEEcCCcccccCC---
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ------KRVVIVDTSNEIGGDG--- 167 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~------~~i~~v~~~~ei~~~~--- 167 (337)
+++++++|+... +...++.+++|++++|+||||||||||+++|+|+++|+.+ ..+.++++.....+..
T Consensus 272 ~~~l~~~~~~~~---l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~i~~~~q~~~~~~~~tv~ 348 (538)
T 3ozx_A 272 WTKIIKKLGDFQ---LVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPNYDGTVQ 348 (538)
T ss_dssp ECCEEEEETTEE---EEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCCCEEEECSSCCCCCSSBHH
T ss_pred EcceEEEECCEE---EEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCeeeEeechhcccccCCCHH
Confidence 457888886532 5556778999999999999999999999999999998743 2345555432111000
Q ss_pred --------CC--ccc-----c---cc----cchhccCCCcchhHHHHHHHHHhhCCcEEEEcCCCCHHHH-------HHH
Q 019702 168 --------DI--PHS-----A---IG----TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEA-------HAC 218 (337)
Q Consensus 168 --------~~--~~~-----~---~~----~~~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~~ld~-------~~l 218 (337)
.. ... . ++ ..+....+||||+||++||+||+++|++|||||||+++|. +.+
T Consensus 349 ~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l 428 (538)
T 3ozx_A 349 QYLENASKDALSTSSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAI 428 (538)
T ss_dssp HHHHHHCSSTTCTTSHHHHHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHH
T ss_pred HHHHHhhhhccchhHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHH
Confidence 00 000 0 00 0134556899999999999999999999999999999995 345
Q ss_pred HHHH-hcCCeEEEEEcCcchhHHhhchHHHHHhcC--ceEEEecCHHHHHH
Q 019702 219 RSIA-ERGVMLIGTAHGEWLENIIKNPILSDLIGG--VDTVTLGDEEARAR 266 (337)
Q Consensus 219 ~~~~-~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~--G~iv~~g~~~~~~~ 266 (337)
.+++ +.|.|||++|||++++..+||+++ +|++ |.....++|..+..
T Consensus 429 ~~l~~~~g~tvi~vsHdl~~~~~~aDri~--vl~~~~~~~~~~~~~~~~~~ 477 (538)
T 3ozx_A 429 KRVTRERKAVTFIIDHDLSIHDYIADRII--VFKGEPEKAGLATSPVTLKT 477 (538)
T ss_dssp HHHHHHTTCEEEEECSCHHHHHHHCSEEE--EEEEETTTEEEECCCEEHHH
T ss_pred HHHHHhCCCEEEEEeCCHHHHHHhCCEEE--EEeCCcceeccCCChHHHHH
Confidence 5665 458999999999999999999999 8875 55666777765443
No 49
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.93 E-value=1.3e-24 Score=206.50 Aligned_cols=223 Identities=13% Similarity=0.157 Sum_probs=154.5
Q ss_pred HHHHHhcccCCCCeeEEEEecCCccEEEEeCc-cCceeccCC---CCCHHHHHHHHHHHhccCC----C-cceEecCc--
Q 019702 15 LRDRLQNDSKRGQLLEVILDLGRLPEARYLGE-FGGKYLRST---EVSVEELEYAQSAVGEFGG----D-NRAGIEGT-- 83 (337)
Q Consensus 15 ~~~~l~~~~~~~~~~ei~l~~g~~~~~~~~g~-~~~~~~~~~---~~t~~~l~~~~~~~~~~~~----~-~~~~~~g~-- 83 (337)
....|.++..+..++||++..+.++.+++.|. +. ..... .+|..++..++..+..+.+ . ....+...
T Consensus 32 ~~~~l~~~l~d~~v~dI~in~~~~v~v~~~g~~~~--~~~~~~~~~lt~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 109 (330)
T 2pt7_A 32 TEELFGDFLKMENITEICYNGNKVVWVLKNNGEWQ--PFDVRDRKAFSLSRLMHFARCCASFKKKTIDNYENPILSSNLA 109 (330)
T ss_dssp HHHHHHHHHTSSSEEEEEECSSSEEEEEETTSCEE--EEECTTCGGGSHHHHHHHHHHHHHHTTCCCCSSSCCEEEEECT
T ss_pred CccchHHHhcCCCCeEEEEcCCCEEEEEECCceEE--EecCCcccCCCHHHHHHHHHHHHHHhCCCCCCCCCeeEEEEcC
Confidence 34556666666789999999999999998886 42 33333 6899999988776543211 1 12222111
Q ss_pred -eeEEEEEee-----CCCcEeeEEEEECC-cccc------------------chhhhhhcccCCCEEEEEcCCCCcHHHH
Q 019702 84 -LHRISAIRS-----RKGAIVGLTCRVGR-AVSG------------------HIDMVYDLLHYGKSILFVGRPGVGKTTV 138 (337)
Q Consensus 84 -~~rv~~~~~-----~~g~i~~l~~r~~~-~~~~------------------~~~~l~~~v~~g~~v~IiGpnGsGKTTL 138 (337)
..|++.+.+ .+.. .+++|... .... .++.+++.+++|++++|+||||||||||
T Consensus 110 ~~~Ri~~~l~~p~~~~~~~--~~~ir~~~~~~i~l~~l~~~g~~~~v~fy~~~l~~l~~~i~~g~~v~i~G~~GsGKTTl 187 (330)
T 2pt7_A 110 NGERVQIVLSPVTVNDETI--SISIRIPSKTTYPHSFFEEQGFYNLLDNKEQAISAIKDGIAIGKNVIVCGGTGSGKTTY 187 (330)
T ss_dssp TSCEEEEECTTTSSSTTCC--EEEEECCCCCCCCHHHHHHTTTTTTSTTHHHHHHHHHHHHHHTCCEEEEESTTSCHHHH
T ss_pred CCcEEEEEEcCCccCCCCc--eEEEeCCCCCCCCHHHHHhCCCcCchhhHHHHHhhhhhhccCCCEEEEECCCCCCHHHH
Confidence 368888872 2223 46666432 1122 4678899999999999999999999999
Q ss_pred HHHHHccccccCCCeEEEEcCCcccccCCCCcccccccchhccCCCcchhHHHHHHHHHhhCCcEEEEcCCCCHHHHHHH
Q 019702 139 MREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHAC 218 (337)
Q Consensus 139 L~~l~gll~~~~~~~i~~v~~~~ei~~~~~~~~~~~~~~~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~~ld~~~l 218 (337)
+++|+|+++|+ .+ .+++++..++... ..+ +.+.... .+|++||+++++||+++|++|++|||++..-.+++
T Consensus 188 l~~l~g~~~~~-~g-~i~i~~~~e~~~~-~~~-~~i~~~~-----ggg~~~r~~la~aL~~~p~ilildE~~~~e~~~~l 258 (330)
T 2pt7_A 188 IKSIMEFIPKE-ER-IISIEDTEEIVFK-HHK-NYTQLFF-----GGNITSADCLKSCLRMRPDRIILGELRSSEAYDFY 258 (330)
T ss_dssp HHHGGGGSCTT-SC-EEEEESSCCCCCS-SCS-SEEEEEC-----BTTBCHHHHHHHHTTSCCSEEEECCCCSTHHHHHH
T ss_pred HHHHhCCCcCC-Cc-EEEECCeeccccc-cch-hEEEEEe-----CCChhHHHHHHHHhhhCCCEEEEcCCChHHHHHHH
Confidence 99999999885 34 4455555444211 011 1111110 17999999999999999999999999997656666
Q ss_pred HHHHhcCC-eEEEEEcCcchhHHhhchHHHHHhcCce
Q 019702 219 RSIAERGV-MLIGTAHGEWLENIIKNPILSDLIGGVD 254 (337)
Q Consensus 219 ~~~~~~G~-tvi~t~H~~~~~~~~~d~v~~~ll~~G~ 254 (337)
..+. +|+ ++++|+|+.+ +...+|+++ .+..|.
T Consensus 259 ~~~~-~g~~tvi~t~H~~~-~~~~~dri~--~l~~g~ 291 (330)
T 2pt7_A 259 NVLC-SGHKGTLTTLHAGS-SEEAFIRLA--NMSSSN 291 (330)
T ss_dssp HHHH-TTCCCEEEEEECSS-HHHHHHHHH--HHHHTS
T ss_pred HHHh-cCCCEEEEEEcccH-HHHHhhhhe--ehhcCC
Confidence 6554 565 7999999999 667899999 666553
No 50
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.92 E-value=1.3e-25 Score=226.28 Aligned_cols=151 Identities=18% Similarity=0.185 Sum_probs=111.5
Q ss_pred eEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCe-------------------------
Q 019702 99 GLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKR------------------------- 153 (337)
Q Consensus 99 ~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~------------------------- 153 (337)
+++++|+... ..+.+++ .+++|++++|+||||||||||+++|+|+++|+.+..
T Consensus 26 ~ls~~yg~~~-~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~~~~~~ 103 (538)
T 1yqt_A 26 DCVHRYGVNA-FVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKN 103 (538)
T ss_dssp CEEEECSTTC-CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHHHHHHT
T ss_pred CcEEEECCcc-ccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHHHHHHH
Confidence 7999997642 2488898 899999999999999999999999999998875441
Q ss_pred ----EEEEcCCcccccC---CCCcc--------cc-------cc----cchhccCCCcchhHHHHHHHHHhhCCcEEEEc
Q 019702 154 ----VVIVDTSNEIGGD---GDIPH--------SA-------IG----TARRMQVPEPSLQHKVMIEAVENHMPEVIIVD 207 (337)
Q Consensus 154 ----i~~v~~~~ei~~~---~~~~~--------~~-------~~----~~~~~~~~S~g~k~r~~ia~al~~~P~vlilD 207 (337)
+.++.+....... ..+.. .. ++ ..+....+|+||+||++||+||+++|++||||
T Consensus 104 ~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LSgGekQRv~iAraL~~~P~lLlLD 183 (538)
T 1yqt_A 104 GEIRPVVKPQYVDLIPKAVKGKVIELLKKADETGKLEEVVKALELENVLEREIQHLSGGELQRVAIAAALLRNATFYFFD 183 (538)
T ss_dssp TSCCCEEECSCGGGSGGGCCSBHHHHHHHHCSSSCHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEE
T ss_pred HhhhhhhhhhhhhhcchhhhccHHHHHhhhhHHHHHHHHHHHcCCChhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 0111110000000 00000 00 00 01234567999999999999999999999999
Q ss_pred CCCCHHHHH-------HHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCc
Q 019702 208 EIGTEAEAH-------ACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGV 253 (337)
Q Consensus 208 Ep~~~ld~~-------~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G 253 (337)
|||+++|.. .+..+.+.|.|||++||+++++..+||+++ ++.++
T Consensus 184 EPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~~~~~~~dri~--vl~~~ 234 (538)
T 1yqt_A 184 EPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIH--VVYGE 234 (538)
T ss_dssp STTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEE--EEEEE
T ss_pred CCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE--EEcCc
Confidence 999999953 456666679999999999999999999999 88653
No 51
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.91 E-value=4.1e-25 Score=225.34 Aligned_cols=152 Identities=17% Similarity=0.184 Sum_probs=112.2
Q ss_pred eeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCe------------------------
Q 019702 98 VGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKR------------------------ 153 (337)
Q Consensus 98 ~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~------------------------ 153 (337)
++++++|+... ..+.+++ .+++|++++|+|||||||||||++|+|++.|+.+..
T Consensus 95 ~~ls~~yg~~~-~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G~~~~~~~~~~~ 172 (607)
T 3bk7_A 95 EDCVHRYGVNA-FVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLK 172 (607)
T ss_dssp GSEEEECSTTC-CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTTSTHHHHHHHHH
T ss_pred CCeEEEECCCC-eeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCCEehhhhhhhhh
Confidence 48999997643 2488898 899999999999999999999999999999875441
Q ss_pred -----EEEEcCCcccccC---CCCc--------ccc-------cc----cchhccCCCcchhHHHHHHHHHhhCCcEEEE
Q 019702 154 -----VVIVDTSNEIGGD---GDIP--------HSA-------IG----TARRMQVPEPSLQHKVMIEAVENHMPEVIIV 206 (337)
Q Consensus 154 -----i~~v~~~~ei~~~---~~~~--------~~~-------~~----~~~~~~~~S~g~k~r~~ia~al~~~P~vlil 206 (337)
+.++.+....... ..+. ... ++ ..+....+|+||+||++||+||+++|++|||
T Consensus 173 ~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSGGekQRvaIAraL~~~P~lLlL 252 (607)
T 3bk7_A 173 NGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFF 252 (607)
T ss_dssp HTSCCCEEECSCGGGGGGTCCSBHHHHHHHTCCSSCHHHHHHHTTCTTGGGSBGGGCCHHHHHHHHHHHHHHSCCSEEEE
T ss_pred hhhcceEEeechhhhchhhccccHHHHhhhhHHHHHHHHHHHHcCCCchhCCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 0011110000000 0000 000 00 0123456899999999999999999999999
Q ss_pred cCCCCHHHH-------HHHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCc
Q 019702 207 DEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGV 253 (337)
Q Consensus 207 DEp~~~ld~-------~~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G 253 (337)
||||+++|. +.+..+.+.|.|||++||+++++..+||+++ +|.++
T Consensus 253 DEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~~~~~~adri~--vl~~~ 304 (607)
T 3bk7_A 253 DEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIH--VVYGE 304 (607)
T ss_dssp ECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEE--EEESC
T ss_pred ECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChHHHHhhCCEEE--EECCC
Confidence 999999995 3466666679999999999999999999998 88753
No 52
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.91 E-value=3.1e-25 Score=243.29 Aligned_cols=167 Identities=16% Similarity=0.185 Sum_probs=128.4
Q ss_pred EeeEEEEECCcc-ccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccC------------------CCeEEEE
Q 019702 97 IVGLTCRVGRAV-SGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEF------------------QKRVVIV 157 (337)
Q Consensus 97 i~~l~~r~~~~~-~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~------------------~~~i~~v 157 (337)
+++++++|+... ...++++++.+++|+.++|+||||||||||+++|+|++.|+. ..++.++
T Consensus 1033 ~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v 1112 (1284)
T 3g5u_A 1033 FSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIV 1112 (1284)
T ss_dssp EEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTSCEEE
T ss_pred EEEEEEECCCCCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHhceEEE
Confidence 668999997532 246999999999999999999999999999999999998862 1346666
Q ss_pred cCCcccccC--------CC----Cccccccc----------c------------hhccCCCcchhHHHHHHHHHhhCCcE
Q 019702 158 DTSNEIGGD--------GD----IPHSAIGT----------A------------RRMQVPEPSLQHKVMIEAVENHMPEV 203 (337)
Q Consensus 158 ~~~~ei~~~--------~~----~~~~~~~~----------~------------~~~~~~S~g~k~r~~ia~al~~~P~v 203 (337)
+|...+... +. .....+.. . .....+|||||||++||||+..+|++
T Consensus 1113 ~Q~~~l~~~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~~p~i 1192 (1284)
T 3g5u_A 1113 SQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHI 1192 (1284)
T ss_dssp ESSCCCCSSBHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHHCCSS
T ss_pred CCCCccccccHHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHHcCCCE
Confidence 665432110 00 00000000 0 11235799999999999999999999
Q ss_pred EEEcCCCCHHHHHH-------HHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHh
Q 019702 204 IIVDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (337)
Q Consensus 204 lilDEp~~~ld~~~-------l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~ 267 (337)
|||||||+++|... +.. ...|.|+|+++|+++.+. .||+++ +|++|++++.|++++++..
T Consensus 1193 LiLDEpTs~lD~~~~~~i~~~l~~-~~~~~tvi~isH~l~~i~-~~dri~--vl~~G~i~~~g~~~~l~~~ 1259 (1284)
T 3g5u_A 1193 LLLDEATSALDTESEKVVQEALDK-AREGRTCIVIAHRLSTIQ-NADLIV--VIQNGKVKEHGTHQQLLAQ 1259 (1284)
T ss_dssp EEEESCSSSCCHHHHHHHHHHHHH-HSSSSCEEEECSCTTGGG-SCSEEE--EEETBEEEEEECHHHHHHS
T ss_pred EEEeCCcccCCHHHHHHHHHHHHH-hCCCCEEEEEecCHHHHH-cCCEEE--EEECCEEEEECCHHHHHhC
Confidence 99999999999532 322 245899999999999885 599999 9999999999999998864
No 53
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.91 E-value=1.2e-24 Score=224.91 Aligned_cols=85 Identities=15% Similarity=0.130 Sum_probs=75.7
Q ss_pred ccCCCcchhHHHHHHHHHhhCCc--EEEEcCCCCHHHH-------HHHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHh
Q 019702 180 MQVPEPSLQHKVMIEAVENHMPE--VIIVDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLI 250 (337)
Q Consensus 180 ~~~~S~g~k~r~~ia~al~~~P~--vlilDEp~~~ld~-------~~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll 250 (337)
...+|+||+||++||+||+++|+ +|||||||+++|. +.+.++++.|.|||++||+++++. .||+++ +|
T Consensus 200 ~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~-~~d~ii--~l 276 (670)
T 3ux8_A 200 AGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTML-AADYLI--DI 276 (670)
T ss_dssp GGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCCHHHHH-HCSEEE--EE
T ss_pred cccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHh-hCCEEE--Ee
Confidence 45689999999999999999998 9999999999993 456677778999999999999765 599999 88
Q ss_pred ------cCceEEEecCHHHHHHh
Q 019702 251 ------GGVDTVTLGDEEARARR 267 (337)
Q Consensus 251 ------~~G~iv~~g~~~~~~~~ 267 (337)
++|++++.|+++++...
T Consensus 277 ~~g~~~~~G~i~~~g~~~~~~~~ 299 (670)
T 3ux8_A 277 GPGAGIHGGEVVAAGTPEEVMND 299 (670)
T ss_dssp CSSSGGGCCSEEEEECHHHHHTC
T ss_pred cccccccCCEEEEecCHHHHhcC
Confidence 89999999999998864
No 54
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.91 E-value=3.2e-25 Score=243.77 Aligned_cols=168 Identities=14% Similarity=0.165 Sum_probs=129.1
Q ss_pred EeeEEEEECCc-cccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCC------------------CeEEEE
Q 019702 97 IVGLTCRVGRA-VSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ------------------KRVVIV 157 (337)
Q Consensus 97 i~~l~~r~~~~-~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~------------------~~i~~v 157 (337)
++|++++|+.. ....++++++.+++|+.++|+||||||||||+++|.|++.|+.| .++.++
T Consensus 1079 f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i~~V 1158 (1321)
T 4f4c_A 1079 FKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIV 1158 (1321)
T ss_dssp EEEEEECCTTSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTTEEEE
T ss_pred EEEEEEeCCCCCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHhheEEE
Confidence 66999999643 23469999999999999999999999999999999999998732 346666
Q ss_pred cCCcccccC-------CCC-c----cccccc-c---------------------hhccCCCcchhHHHHHHHHHhhCCcE
Q 019702 158 DTSNEIGGD-------GDI-P----HSAIGT-A---------------------RRMQVPEPSLQHKVMIEAVENHMPEV 203 (337)
Q Consensus 158 ~~~~ei~~~-------~~~-~----~~~~~~-~---------------------~~~~~~S~g~k~r~~ia~al~~~P~v 203 (337)
+|.+.+... .+. | ...+.. + ..-..+|+|||||++||||+..+|+|
T Consensus 1159 ~Qdp~LF~gTIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr~~~I 1238 (1321)
T 4f4c_A 1159 SQEPTLFDCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKI 1238 (1321)
T ss_dssp CSSCCCCSEEHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHSCCSE
T ss_pred CCCCEeeCccHHHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHhCCCE
Confidence 665543210 000 1 000000 0 11124799999999999999999999
Q ss_pred EEEcCCCCHHHHH---HHHHH-H--hcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHh
Q 019702 204 IIVDEIGTEAEAH---ACRSI-A--ERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (337)
Q Consensus 204 lilDEp~~~ld~~---~l~~~-~--~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~ 267 (337)
|||||||+++|.+ .+.+. . .+|.|+|+++|.++.+ .-||+++ +|++|++++.|+|+++++.
T Consensus 1239 LiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IAHRLsTi-~~aD~I~--Vld~G~IvE~Gth~eLl~~ 1305 (1321)
T 4f4c_A 1239 LLLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRLNTV-MNADCIA--VVSNGTIIEKGTHTQLMSE 1305 (1321)
T ss_dssp EEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEECSSSSTT-TTCSEEE--EESSSSEEEEECHHHHHHC
T ss_pred EEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEeccCHHHH-HhCCEEE--EEECCEEEEECCHHHHHhC
Confidence 9999999999953 23332 2 2489999999999876 4799999 9999999999999999874
No 55
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.91 E-value=5.7e-24 Score=205.24 Aligned_cols=211 Identities=19% Similarity=0.196 Sum_probs=149.8
Q ss_pred CCeeEEEEecCCccEEEEeCccCceec-cCCCCCHHHHHHHHHHHhc------cC--C--CcceEecC-ceeEEEEEeeC
Q 019702 26 GQLLEVILDLGRLPEARYLGEFGGKYL-RSTEVSVEELEYAQSAVGE------FG--G--DNRAGIEG-TLHRISAIRSR 93 (337)
Q Consensus 26 ~~~~ei~l~~g~~~~~~~~g~~~~~~~-~~~~~t~~~l~~~~~~~~~------~~--~--~~~~~~~g-~~~rv~~~~~~ 93 (337)
.++||||+..+.++.+|++|.+. .+ ...+++.+++..++..+.. +. . +.++.+++ .++|++.+...
T Consensus 25 ~~asDIhi~~~~~v~~r~~G~l~--~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~d~~~~~~~~~r~Rv~~~~~~ 102 (372)
T 2ewv_A 25 LGASDIHLTAGAPPAVRIDGYIK--FLKDFPRLTPEDTQKLAYSVMSEKHRQKLEENGQVDFSFGVRGVGRFRANVFYQR 102 (372)
T ss_dssp HTCSEEEECSSSSCEEEETTEEE--ECTTSCCSCCSTTHHHHHTTCCSTTTTHHHHSSEEEEEEECSSSCEEEEEEECCS
T ss_pred CCCeEEEEEcCCeEEEEECCEEE--EeccCCCCCHHHHHHHHHHHhChhhhhhhhhccceEEEEEcCCCcEEEEEEEecC
Confidence 57999999999999999999764 44 4467788888888776521 11 1 33444555 48999999988
Q ss_pred CCcEeeEEEEECCccccchhh------h-hhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEcCCcccccC
Q 019702 94 KGAIVGLTCRVGRAVSGHIDM------V-YDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGD 166 (337)
Q Consensus 94 ~g~i~~l~~r~~~~~~~~~~~------l-~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~~~~ei~~~ 166 (337)
+|. .+++|........++. + ++.+.+|++++|+||||||||||+++|+|+++|+..++|.+++++.++...
T Consensus 103 ~g~--~~viR~l~~~~~~l~~lg~~~~l~~l~~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~ 180 (372)
T 2ewv_A 103 GSV--AAALRSLPAEIPEFKKLGLPDKVLELCHRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFK 180 (372)
T ss_dssp SSC--BEEECCBCSSCCCHHHHCCCSSHHHHTTSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCC
T ss_pred CCc--EEEEEeCCcccCCHhHcCCCHHHHHHhhcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhc
Confidence 888 7898876544322222 1 123678999999999999999999999999988645788888776554211
Q ss_pred CCCcccccccchhccCCCcchhHHHHHHHHHhhCCcEEEEcCCCCHHHHHHHHHHHhcCCeEEEEEcCcchhHHhhchHH
Q 019702 167 GDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRSIAERGVMLIGTAHGEWLENIIKNPIL 246 (337)
Q Consensus 167 ~~~~~~~~~~~~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~~ld~~~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~ 246 (337)
. .+....+..+.......+.+++.+++++|++|++|||++...+..+.++++.|++|++|+|+.+ +...+++++
T Consensus 181 ----~-~~~~v~Q~~~g~~~~~~~~~l~~~L~~~pd~illdE~~d~e~~~~~l~~~~~g~~vi~t~H~~~-~~~~~~rl~ 254 (372)
T 2ewv_A 181 ----H-KKSIVNQREVGEDTKSFADALRAALREDPDVIFVGEMRDLETVETALRAAETGHLVFGTLHTNT-AIDTIHRIV 254 (372)
T ss_dssp ----C-SSSEEEEEEBTTTBSCSHHHHHHHTTSCCSEEEESCCCSHHHHHHHHHHHTTTCEEEECCCCCS-HHHHHHHHH
T ss_pred ----c-CceEEEeeecCCCHHHHHHHHHHHhhhCcCEEEECCCCCHHHHHHHHHHHhcCCEEEEEECcch-HHHHHHHHH
Confidence 0 1111111001011123467999999999999999999987666555555678999999999987 666788876
No 56
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.91 E-value=4.3e-25 Score=242.11 Aligned_cols=166 Identities=16% Similarity=0.177 Sum_probs=129.0
Q ss_pred EeeEEEEECCc-cccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCC------------------CeEEEE
Q 019702 97 IVGLTCRVGRA-VSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ------------------KRVVIV 157 (337)
Q Consensus 97 i~~l~~r~~~~-~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~------------------~~i~~v 157 (337)
+++++++|+.. ....++++++.+++|+.++|+||||||||||+++|+|++.|+.| .++.++
T Consensus 390 ~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v 469 (1284)
T 3g5u_A 390 FKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVV 469 (1284)
T ss_dssp EEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEE
T ss_pred EEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhheEEE
Confidence 66899999753 23469999999999999999999999999999999999998732 136667
Q ss_pred cCCcccccCCCCccc-----------cccc----------------------chhccCCCcchhHHHHHHHHHhhCCcEE
Q 019702 158 DTSNEIGGDGDIPHS-----------AIGT----------------------ARRMQVPEPSLQHKVMIEAVENHMPEVI 204 (337)
Q Consensus 158 ~~~~ei~~~~~~~~~-----------~~~~----------------------~~~~~~~S~g~k~r~~ia~al~~~P~vl 204 (337)
+|...+... .+.++ .+.. .++...+|||||||++||||+..+|++|
T Consensus 470 ~Q~~~l~~~-ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~il 548 (1284)
T 3g5u_A 470 SQEPVLFAT-TIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKIL 548 (1284)
T ss_dssp CSSCCCCSS-CHHHHHHHHCSSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSEE
T ss_pred cCCCccCCc-cHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhcCCCEE
Confidence 665543211 11110 0000 0112357999999999999999999999
Q ss_pred EEcCCCCHHHHHH-------HHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHh
Q 019702 205 IVDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (337)
Q Consensus 205 ilDEp~~~ld~~~-------l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~ 267 (337)
||||||+++|.+. +.. ..+|.|+|+++|+++.+.. ||+++ +|++|++++.|+++++...
T Consensus 549 iLDEpts~LD~~~~~~i~~~l~~-~~~~~t~i~itH~l~~i~~-~d~i~--vl~~G~i~~~g~~~~l~~~ 614 (1284)
T 3g5u_A 549 LLDEATSALDTESEAVVQAALDK-AREGRTTIVIAHRLSTVRN-ADVIA--GFDGGVIVEQGNHDELMRE 614 (1284)
T ss_dssp EEESTTCSSCHHHHHHHHHHHHH-HHTTSEEEEECSCHHHHTT-CSEEE--ECSSSCCCCEECHHHHHHT
T ss_pred EEECCCCCCCHHHHHHHHHHHHH-HcCCCEEEEEecCHHHHHc-CCEEE--EEECCEEEEECCHHHHHhC
Confidence 9999999999532 222 2468999999999998854 99999 9999999999999998764
No 57
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.90 E-value=1.6e-24 Score=238.08 Aligned_cols=167 Identities=17% Similarity=0.165 Sum_probs=129.9
Q ss_pred EeeEEEEECCc-cccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCC------------------CeEEEE
Q 019702 97 IVGLTCRVGRA-VSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ------------------KRVVIV 157 (337)
Q Consensus 97 i~~l~~r~~~~-~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~------------------~~i~~v 157 (337)
++|++++|+.. ....++++++.+++|+.++|+||+|||||||++.|.|++.|+.| .+|.++
T Consensus 418 ~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v 497 (1321)
T 4f4c_A 418 VENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVV 497 (1321)
T ss_dssp EEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEE
T ss_pred EEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhhccccc
Confidence 66999999743 34569999999999999999999999999999999999998732 246777
Q ss_pred cCCcccccC-------CC---Cccccccc-c---------------------hhccCCCcchhHHHHHHHHHhhCCcEEE
Q 019702 158 DTSNEIGGD-------GD---IPHSAIGT-A---------------------RRMQVPEPSLQHKVMIEAVENHMPEVII 205 (337)
Q Consensus 158 ~~~~ei~~~-------~~---~~~~~~~~-~---------------------~~~~~~S~g~k~r~~ia~al~~~P~vli 205 (337)
+|.+.+... .+ .....+.. + .+-..+|||||||++||||+..+|+++|
T Consensus 498 ~Q~~~Lf~~TI~eNI~~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~Ili 577 (1321)
T 4f4c_A 498 SQEPALFNCTIEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILL 577 (1321)
T ss_dssp CSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEEE
T ss_pred CCcceeeCCchhHHHhhhcccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCCEEE
Confidence 776544211 01 11111000 0 1122479999999999999999999999
Q ss_pred EcCCCCHHHH-------HHHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHHh
Q 019702 206 VDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARR 267 (337)
Q Consensus 206 lDEp~~~ld~-------~~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~~ 267 (337)
|||||+++|. +.+..+ .+|.|+|+++|.++.+ ..||+++ +|++|++++.|+.+++...
T Consensus 578 LDE~tSaLD~~te~~i~~~l~~~-~~~~T~iiiaHrls~i-~~aD~Ii--vl~~G~ive~Gth~eL~~~ 642 (1321)
T 4f4c_A 578 LDEATSALDAESEGIVQQALDKA-AKGRTTIIIAHRLSTI-RNADLII--SCKNGQVVEVGDHRALMAQ 642 (1321)
T ss_dssp EESTTTTSCTTTHHHHHHHHHHH-HTTSEEEEECSCTTTT-TTCSEEE--EEETTEEEEEECHHHHHTT
T ss_pred EecccccCCHHHHHHHHHHHHHH-hCCCEEEEEcccHHHH-HhCCEEE--EeeCCeeeccCCHHHHHHh
Confidence 9999999994 233333 3589999999999976 5799999 9999999999999998764
No 58
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.90 E-value=5.4e-24 Score=225.18 Aligned_cols=164 Identities=16% Similarity=0.189 Sum_probs=122.8
Q ss_pred eEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHc-ccc--c-cCCCeEEEEcCCc-ccccC-------
Q 019702 99 GLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIAR-VLS--D-EFQKRVVIVDTSN-EIGGD------- 166 (337)
Q Consensus 99 ~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~g-ll~--~-~~~~~i~~v~~~~-ei~~~------- 166 (337)
+++++|+.... ++++++.+.+|++++|+|||||||||||++|+| .+. + ....++.++++.. .....
T Consensus 440 ~ls~~yg~~~i--L~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~LagG~i~g~~~~~~~~~~~v~q~~~~~~~~ltv~e~l 517 (986)
T 2iw3_A 440 EFSLAYGAKIL--LNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVDGFPTQEECRTVYVEHDIDGTHSDTSVLDFV 517 (986)
T ss_dssp EEEEEETTEEE--EEEEEEEEETTCEEEEECSTTSSHHHHHHHHHHTCSTTCCCTTTSCEEETTCCCCCCCTTSBHHHHH
T ss_pred eEEEEECCEEe--EecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCccccceeEEEEcccccccccCCcHHHHH
Confidence 78899986554 999999999999999999999999999999984 331 1 1122456665432 11000
Q ss_pred -CCCc--ccc-------ccc-----chhccCCCcchhHHHHHHHHHhhCCcEEEEcCCCCHHHHHH---H-HHHHhcCCe
Q 019702 167 -GDIP--HSA-------IGT-----ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA---C-RSIAERGVM 227 (337)
Q Consensus 167 -~~~~--~~~-------~~~-----~~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~~ld~~~---l-~~~~~~G~t 227 (337)
.... ... ++. .+....+|+|||||++||+||+.+|++|||||||+++|... + ..+.+.|.|
T Consensus 518 ~~~~~~~~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~~g~t 597 (986)
T 2iw3_A 518 FESGVGTKEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTCGIT 597 (986)
T ss_dssp HTTCSSCHHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHHSCSE
T ss_pred HHhhcCHHHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHhCCCE
Confidence 0000 000 010 12345689999999999999999999999999999999643 2 223346899
Q ss_pred EEEEEcCcchhHHhhchHHHHHhcCceEE-EecCHHHHHH
Q 019702 228 LIGTAHGEWLENIIKNPILSDLIGGVDTV-TLGDEEARAR 266 (337)
Q Consensus 228 vi~t~H~~~~~~~~~d~v~~~ll~~G~iv-~~g~~~~~~~ 266 (337)
+|++||+.+++..+||+++ ++++|+++ +.|+++++..
T Consensus 598 vIivSHdl~~l~~~adrii--~L~~G~iv~~~G~~~e~~~ 635 (986)
T 2iw3_A 598 SITISHDSVFLDNVCEYII--NYEGLKLRKYKGNFTEFVK 635 (986)
T ss_dssp EEEECSCHHHHHHHCSEEE--EEETTEEEEEESCHHHHHH
T ss_pred EEEEECCHHHHHHhCCEEE--EEECCeeecCCCCHHHHHh
Confidence 9999999999999999999 99999986 6899998765
No 59
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.89 E-value=4.6e-24 Score=217.44 Aligned_cols=151 Identities=18% Similarity=0.206 Sum_probs=109.1
Q ss_pred eEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEE----------EEcCCc-------
Q 019702 99 GLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVV----------IVDTSN------- 161 (337)
Q Consensus 99 ~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~----------~v~~~~------- 161 (337)
+++++|+.... .++.+. .+.+|++++|+|||||||||||++|+|+++|+.+ .+. ++....
T Consensus 82 ~~~~~Y~~~~~-~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G-~i~~~~~~~~~~~~~~g~~~~~~~~~ 158 (608)
T 3j16_B 82 HVTHRYSANSF-KLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLG-RFDDPPEWQEIIKYFRGSELQNYFTK 158 (608)
T ss_dssp TEEEECSTTSC-EEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTT-TTCCSSCHHHHHHHTTTSTHHHHHHH
T ss_pred CeEEEECCCce-eecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCc-eEecccchhhhhheecChhhhhhhhH
Confidence 79999975432 244444 5789999999999999999999999999999854 331 000000
Q ss_pred ----ccc------cCCCCc-------------------c--ccc-------c----cchhccCCCcchhHHHHHHHHHhh
Q 019702 162 ----EIG------GDGDIP-------------------H--SAI-------G----TARRMQVPEPSLQHKVMIEAVENH 199 (337)
Q Consensus 162 ----ei~------~~~~~~-------------------~--~~~-------~----~~~~~~~~S~g~k~r~~ia~al~~ 199 (337)
++. ....++ . ..+ + ..+....+|+||+||++||+||++
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~iAraL~~ 238 (608)
T 3j16_B 159 MLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQ 238 (608)
T ss_dssp HHHTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHHCCSCHHHHHHHHHHHTCTGGGGSCTTTCCHHHHHHHHHHHHHHS
T ss_pred HHHHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhhhhhHHHHHHHHHHHcCCcchhCCChHHCCHHHHHHHHHHHHHHh
Confidence 000 000000 0 000 0 013355689999999999999999
Q ss_pred CCcEEEEcCCCCHHHHH-------HHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCce
Q 019702 200 MPEVIIVDEIGTEAEAH-------ACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVD 254 (337)
Q Consensus 200 ~P~vlilDEp~~~ld~~-------~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~ 254 (337)
+|++|||||||+++|.. .+..+.+.|.|||++||+++++..+||+++ +|.++.
T Consensus 239 ~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~~~~~~~drv~--vl~~~~ 298 (608)
T 3j16_B 239 EADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVC--IIYGVP 298 (608)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHHHHHHHCSEEE--EEESCT
T ss_pred CCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEE--EEeCCc
Confidence 99999999999999953 455556679999999999999999999999 887654
No 60
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.89 E-value=1.5e-24 Score=229.51 Aligned_cols=79 Identities=13% Similarity=0.119 Sum_probs=66.8
Q ss_pred ccCCCcchhHHHHHHHHHhhCCcEEEEcCCCCHHHHHHHH----HHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceE
Q 019702 180 MQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR----SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDT 255 (337)
Q Consensus 180 ~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~~ld~~~l~----~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~i 255 (337)
...+|||||||++||+|++++|++|||||||+++|..... .+.+.|.|||++||+.+++..+||+++ +|.+|++
T Consensus 899 ~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~g~tVIiISHD~e~v~~l~DrVi--vL~~G~I 976 (986)
T 2iw3_A 899 IRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGGVIIITHSAEFTKNLTEEVW--AVKDGRM 976 (986)
T ss_dssp GGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSCSSEEEEECSCHHHHTTTCCEEE--CCBTTBC
T ss_pred ccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEE--EEECCEE
Confidence 3468999999999999999999999999999999975433 334447899999999999999999999 9999998
Q ss_pred EEecC
Q 019702 256 VTLGD 260 (337)
Q Consensus 256 v~~g~ 260 (337)
+..|+
T Consensus 977 v~~G~ 981 (986)
T 2iw3_A 977 TPSGH 981 (986)
T ss_dssp CC---
T ss_pred EEeCC
Confidence 87664
No 61
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.89 E-value=1.5e-23 Score=216.71 Aligned_cols=84 Identities=17% Similarity=0.158 Sum_probs=74.2
Q ss_pred ccCCCcchhHHHHHHHHHhhCC---cEEEEcCCCCHHHH-------HHHHHHHhcCCeEEEEEcCcchhHHhhchHHHHH
Q 019702 180 MQVPEPSLQHKVMIEAVENHMP---EVIIVDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDL 249 (337)
Q Consensus 180 ~~~~S~g~k~r~~ia~al~~~P---~vlilDEp~~~ld~-------~~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~l 249 (337)
...+||||+||++||+||+++| ++||+||||+++|. +.+.++++.|.|||++||+++++ ..||+++ +
T Consensus 541 ~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~~~-~~~d~i~--~ 617 (670)
T 3ux8_A 541 ATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVI-KTADYII--D 617 (670)
T ss_dssp GGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHH-TTCSEEE--E
T ss_pred chhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH-HhCCEEE--E
Confidence 4568999999999999999887 59999999999994 45666777799999999999977 4699999 9
Q ss_pred h------cCceEEEecCHHHHHH
Q 019702 250 I------GGVDTVTLGDEEARAR 266 (337)
Q Consensus 250 l------~~G~iv~~g~~~~~~~ 266 (337)
| ++|++++.|+++++..
T Consensus 618 l~~~~g~~~G~i~~~g~~~~~~~ 640 (670)
T 3ux8_A 618 LGPEGGDRGGQIVAVGTPEEVAE 640 (670)
T ss_dssp EESSSGGGCCEEEEEECHHHHHT
T ss_pred ecCCcCCCCCEEEEecCHHHHHh
Confidence 9 8999999999999865
No 62
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.89 E-value=9.1e-24 Score=212.69 Aligned_cols=148 Identities=16% Similarity=0.134 Sum_probs=103.7
Q ss_pred eEEEEECCccccchhhhhhc-ccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEE----------EEcCC-------
Q 019702 99 GLTCRVGRAVSGHIDMVYDL-LHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVV----------IVDTS------- 160 (337)
Q Consensus 99 ~l~~r~~~~~~~~~~~l~~~-v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~----------~v~~~------- 160 (337)
..+.||+... ++-..+- +++|++++|+||||||||||+++|+|++.|+.+ .+. .+...
T Consensus 4 ~~~~~~~~~~---f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G-~i~~~~~~~~~~~~~~g~~i~~~~~ 79 (538)
T 3ozx_A 4 EVIHRYKVNG---FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFG-DPNSKVGKDEVLKRFRGKEIYNYFK 79 (538)
T ss_dssp CEEEESSTTS---CEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTT-CTTSCCCHHHHHHHHTTSTTHHHHH
T ss_pred CCceecCCCc---eeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCC-ccccccchhhHHhhcCCeeHHHHHH
Confidence 4678887432 2222333 568999999999999999999999999998743 220 00000
Q ss_pred ------ccc----ccCCCCcc----------------cc-------cc----cchhccCCCcchhHHHHHHHHHhhCCcE
Q 019702 161 ------NEI----GGDGDIPH----------------SA-------IG----TARRMQVPEPSLQHKVMIEAVENHMPEV 203 (337)
Q Consensus 161 ------~ei----~~~~~~~~----------------~~-------~~----~~~~~~~~S~g~k~r~~ia~al~~~P~v 203 (337)
..+ .+....+. .. ++ ..+.+..+|+||+||++||+||+++|++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~iA~aL~~~p~i 159 (538)
T 3ozx_A 80 ELYSNELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADV 159 (538)
T ss_dssp HHHTTCCCEEEECSCTTGGGTTCCSBHHHHHHHHCCSSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHSCCSE
T ss_pred HHhhcccchhhccchhhhhhhhccCcHHHHhhcchhHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence 000 00000000 00 00 0133456899999999999999999999
Q ss_pred EEEcCCCCHHHHH-------HHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcCc
Q 019702 204 IIVDEIGTEAEAH-------ACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGV 253 (337)
Q Consensus 204 lilDEp~~~ld~~-------~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G 253 (337)
|||||||+++|.. .+.++.+ |.|||++||+++++..+||+++ ++++|
T Consensus 160 lllDEPts~LD~~~~~~l~~~l~~l~~-g~tii~vsHdl~~~~~~~d~i~--vl~~~ 213 (538)
T 3ozx_A 160 YIFDQPSSYLDVRERMNMAKAIRELLK-NKYVIVVDHDLIVLDYLTDLIH--IIYGE 213 (538)
T ss_dssp EEEESTTTTCCHHHHHHHHHHHHHHCT-TSEEEEECSCHHHHHHHCSEEE--EEEEE
T ss_pred EEEECCcccCCHHHHHHHHHHHHHHhC-CCEEEEEEeChHHHHhhCCEEE--EecCC
Confidence 9999999999953 3445544 9999999999999999999999 88764
No 63
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.85 E-value=1e-21 Score=207.43 Aligned_cols=85 Identities=15% Similarity=0.141 Sum_probs=74.6
Q ss_pred ccCCCcchhHHHHHHHHHhhCC---cEEEEcCCCCHHHH-------HHHHHHHhcCCeEEEEEcCcchhHHhhchHHHHH
Q 019702 180 MQVPEPSLQHKVMIEAVENHMP---EVIIVDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDL 249 (337)
Q Consensus 180 ~~~~S~g~k~r~~ia~al~~~P---~vlilDEp~~~ld~-------~~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~l 249 (337)
...+||||+||++||++|+.+| ++|||||||+++|. +.+.++++.|.|||+++|+++++. .||+++ +
T Consensus 803 ~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~~i~-~ADrIi--v 879 (916)
T 3pih_A 803 ATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLDVIK-NADHII--D 879 (916)
T ss_dssp STTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHT-TCSEEE--E
T ss_pred ccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH-hCCEEE--E
Confidence 3468999999999999999875 79999999999994 445666778999999999999875 599999 8
Q ss_pred h------cCceEEEecCHHHHHHh
Q 019702 250 I------GGVDTVTLGDEEARARR 267 (337)
Q Consensus 250 l------~~G~iv~~g~~~~~~~~ 267 (337)
| ++|++++.|+|++++..
T Consensus 880 Lgp~gg~~~G~Iv~~Gtpeel~~~ 903 (916)
T 3pih_A 880 LGPEGGKEGGYIVATGTPEEIAKN 903 (916)
T ss_dssp EESSSGGGCCEEEEEESHHHHHSC
T ss_pred ecCCCCCCCCEEEEEcCHHHHHhC
Confidence 9 89999999999999864
No 64
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.84 E-value=5.1e-23 Score=177.28 Aligned_cols=127 Identities=9% Similarity=0.094 Sum_probs=84.2
Q ss_pred hhhhcccCCCEEEEEcCCCCcHHHHHH------------HHHccccccCCCeEEEEcC-CcccccCC--CCcccccccch
Q 019702 114 MVYDLLHYGKSILFVGRPGVGKTTVMR------------EIARVLSDEFQKRVVIVDT-SNEIGGDG--DIPHSAIGTAR 178 (337)
Q Consensus 114 ~l~~~v~~g~~v~IiGpnGsGKTTLL~------------~l~gll~~~~~~~i~~v~~-~~ei~~~~--~~~~~~~~~~~ 178 (337)
++++.+++|++++|+||||||||||++ .+.|++.++.+. ..+... ..++.... ...........
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~~~~~~~d~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 79 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKPTEVISSDFCRGLMSDDEND-QTVTGAAFDVLHYIVSKRLQLGKLTVVD 79 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSCGGGEEEHHHHHHHHCSSTTC-GGGHHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHccCCeEEccHHHHHHhcCcccc-hhhHHHHHHHHHHHHHHHHhCCCeEEEE
Confidence 367889999999999999999999999 666666554211 000000 00000000 00000000012
Q ss_pred hccCCCcchhHHHHHHHHHhhCCcEEEEcCCCCHHHHH-----------------------HHHHHHhcCCeEEEEEcCc
Q 019702 179 RMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAH-----------------------ACRSIAERGVMLIGTAHGE 235 (337)
Q Consensus 179 ~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~~ld~~-----------------------~l~~~~~~G~tvi~t~H~~ 235 (337)
.....|+|++||++||+++..+|++|++|||++++|.. .+..+.++|.|+|++||++
T Consensus 80 ~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~ 159 (171)
T 4gp7_A 80 ATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSP 159 (171)
T ss_dssp SCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSH
T ss_pred CCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCH
Confidence 23345899999999999999999999999999999965 1223455699999999999
Q ss_pred chhHHh
Q 019702 236 WLENII 241 (337)
Q Consensus 236 ~~~~~~ 241 (337)
+++..+
T Consensus 160 ~~~~~~ 165 (171)
T 4gp7_A 160 EEVEEV 165 (171)
T ss_dssp HHHHHE
T ss_pred HHhhhh
Confidence 987654
No 65
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.83 E-value=2.8e-21 Score=202.43 Aligned_cols=85 Identities=15% Similarity=0.132 Sum_probs=74.7
Q ss_pred ccCCCcchhHHHHHHHHHhhC---CcEEEEcCCCCHHHH-------HHHHHHHhcCCeEEEEEcCcchhHHhhchHHHHH
Q 019702 180 MQVPEPSLQHKVMIEAVENHM---PEVIIVDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDL 249 (337)
Q Consensus 180 ~~~~S~g~k~r~~ia~al~~~---P~vlilDEp~~~ld~-------~~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~l 249 (337)
...+|+||+||++||++|+.+ |++|||||||+++|. +.+..+++.|.|||+++|+++++ ..||+++ +
T Consensus 728 ~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~~i-~~aDrii--~ 804 (842)
T 2vf7_A 728 ATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQVV-AASDWVL--D 804 (842)
T ss_dssp GGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHH-TTCSEEE--E
T ss_pred cccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHH-HhCCEEE--E
Confidence 345799999999999999996 799999999999984 34556677899999999999988 6899999 8
Q ss_pred h------cCceEEEecCHHHHHHh
Q 019702 250 I------GGVDTVTLGDEEARARR 267 (337)
Q Consensus 250 l------~~G~iv~~g~~~~~~~~ 267 (337)
| ++|++++.|++++++..
T Consensus 805 L~p~~g~~~G~Iv~~g~~~el~~~ 828 (842)
T 2vf7_A 805 IGPGAGEDGGRLVAQGTPAEVAQA 828 (842)
T ss_dssp ECSSSGGGCCSEEEEECHHHHTTC
T ss_pred ECCCCCCCCCEEEEEcCHHHHHhC
Confidence 9 68999999999998753
No 66
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.82 E-value=7.4e-20 Score=168.28 Aligned_cols=128 Identities=18% Similarity=0.195 Sum_probs=93.5
Q ss_pred chhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEcCCcccccCCCCcccccccchhccCCCcchhHH
Q 019702 111 HIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHK 190 (337)
Q Consensus 111 ~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~~~~ei~~~~~~~~~~~~~~~~~~~~S~g~k~r 190 (337)
.+++++ +++|++++|+||||||||||+++|+|+++|+..+.|.+.+++.++... .......+..+.-.....+
T Consensus 16 vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~-----~~~~~v~q~~~gl~~~~l~ 88 (261)
T 2eyu_A 16 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFK-----HKKSIVNQREVGEDTKSFA 88 (261)
T ss_dssp HHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCC-----CSSSEEEEEEBTTTBSCHH
T ss_pred HHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecC-----CcceeeeHHHhCCCHHHHH
Confidence 377777 899999999999999999999999999988645788777765544221 1000000101111123568
Q ss_pred HHHHHHHhhCCcEEEEcCCCCHHHHHHHHHHHhcCCeEEEEEcCcchhHHhhchHH
Q 019702 191 VMIEAVENHMPEVIIVDEIGTEAEAHACRSIAERGVMLIGTAHGEWLENIIKNPIL 246 (337)
Q Consensus 191 ~~ia~al~~~P~vlilDEp~~~ld~~~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~ 246 (337)
++++++|+++|++|++|||++......+.+.+++|++|++|+|+.+ +...+++++
T Consensus 89 ~~la~aL~~~p~illlDEp~D~~~~~~~l~~~~~g~~vl~t~H~~~-~~~~~dri~ 143 (261)
T 2eyu_A 89 DALRAALREDPDVIFVGEMRDLETVETALRAAETGHLVFGTLHTNT-AIDTIHRIV 143 (261)
T ss_dssp HHHHHHHHHCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSS-HHHHHHHHH
T ss_pred HHHHHHHhhCCCEEEeCCCCCHHHHHHHHHHHccCCEEEEEeCcch-HHHHHHHHh
Confidence 9999999999999999999965544444445577999999999988 556788887
No 67
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.82 E-value=1.3e-20 Score=186.39 Aligned_cols=150 Identities=14% Similarity=0.037 Sum_probs=110.0
Q ss_pred hhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCC-e-EEEEcC-CcccccCC------------CCccccc---
Q 019702 113 DMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK-R-VVIVDT-SNEIGGDG------------DIPHSAI--- 174 (337)
Q Consensus 113 ~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~-~-i~~v~~-~~ei~~~~------------~~~~~~~--- 174 (337)
.++++.+++|++++|+||||||||||+|+|+|++.|+. + . |.+-.+ ...+++.. .+.++.+
T Consensus 129 ~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~-G~~pI~vdg~~~~~i~~vpq~~~l~~~~~~~tv~eni~~~~ 207 (460)
T 2npi_A 129 EKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFN-AYQPLYINLDPQQPIFTVPGCISATPISDILDAQLPTWGQS 207 (460)
T ss_dssp HHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHH-CCCCEEEECCTTSCSSSCSSCCEEEECCSCCCTTCTTCSCB
T ss_pred hcCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccC-CceeEEEcCCccCCeeeeccchhhcccccccchhhhhcccc
Confidence 35778899999999999999999999999999998874 4 4 433211 11111000 0000000
Q ss_pred -----------c-cc--------hhccCCCcchhHHHHHHHH--HhhCCcE----EEEcC-CCCHHHH--HHHHHHH-hc
Q 019702 175 -----------G-TA--------RRMQVPEPSLQHKVMIEAV--ENHMPEV----IIVDE-IGTEAEA--HACRSIA-ER 224 (337)
Q Consensus 175 -----------~-~~--------~~~~~~S~g~k~r~~ia~a--l~~~P~v----lilDE-p~~~ld~--~~l~~~~-~~ 224 (337)
. .. .....+|+||+||+++|+| |+.+|++ ||+|| |++++|. +.+..+. +.
T Consensus 208 ~~~~~~~~~~~~~ll~~~gl~~~~~~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~~~~l~~l~~~~ 287 (460)
T 2npi_A 208 LTSGATLLHNKQPMVKNFGLERINENKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDENLAELHHIIEKL 287 (460)
T ss_dssp CBSSCCSSCCBCCEECCCCSSSGGGCHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSSCHHHHHHHHHT
T ss_pred cccCcchHHHHHHHHHHhCCCcccchhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChhHHHHHHHHHHh
Confidence 0 00 1123469999999999999 9999999 99999 9999984 4455544 44
Q ss_pred CCeEEEEEcCcc------hhHHhhch-----HHHHHhc-CceEEEecCHHHHHH
Q 019702 225 GVMLIGTAHGEW------LENIIKNP-----ILSDLIG-GVDTVTLGDEEARAR 266 (337)
Q Consensus 225 G~tvi~t~H~~~------~~~~~~d~-----v~~~ll~-~G~iv~~g~~~~~~~ 266 (337)
|.++|+++|+.+ ++..+||+ ++ +|+ +|+++ .|+++++.+
T Consensus 288 ~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi--~l~k~G~iv-~g~~~~~~~ 338 (460)
T 2npi_A 288 NVNIMLVLCSETDPLWEKVKKTFGPELGNNNIF--FIPKLDGVS-AVDDVYKRS 338 (460)
T ss_dssp TCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEE--EECCCTTCC-CCCHHHHHH
T ss_pred CCCEEEEEccCchhhhHHHHHHhcccccCCEEE--EEeCCCcEE-ECCHHHHhh
Confidence 899999999988 77789999 88 898 99999 999988743
No 68
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.81 E-value=2.7e-20 Score=195.91 Aligned_cols=85 Identities=16% Similarity=0.149 Sum_probs=74.0
Q ss_pred ccCCCcchhHHHHHHHHHhhCC---cEEEEcCCCCHHHH-------HHHHHHHhcCCeEEEEEcCcchhHHhhchHHHHH
Q 019702 180 MQVPEPSLQHKVMIEAVENHMP---EVIIVDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDL 249 (337)
Q Consensus 180 ~~~~S~g~k~r~~ia~al~~~P---~vlilDEp~~~ld~-------~~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~l 249 (337)
...+|+||+||++||++|+++| ++|||||||+++|. +.+..+++.|.|||++||+++++ ..||+++ +
T Consensus 843 ~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i-~~aDrIi--v 919 (972)
T 2r6f_A 843 ATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVI-KTADYII--D 919 (972)
T ss_dssp GGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHH-TTCSEEE--E
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHH-HhCCEEE--E
Confidence 3457999999999999999875 99999999999995 34556667899999999999987 4799999 8
Q ss_pred h------cCceEEEecCHHHHHHh
Q 019702 250 I------GGVDTVTLGDEEARARR 267 (337)
Q Consensus 250 l------~~G~iv~~g~~~~~~~~ 267 (337)
| ++|++++.|++++++..
T Consensus 920 L~p~gG~~~G~Iv~~g~~~el~~~ 943 (972)
T 2r6f_A 920 LGPEGGDRGGQIVAVGTPEEVAEV 943 (972)
T ss_dssp ECSSSTTSCCSEEEEESHHHHHTC
T ss_pred EcCCCCCCCCEEEEecCHHHHHhC
Confidence 9 68999999999998763
No 69
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.81 E-value=4.4e-20 Score=194.86 Aligned_cols=85 Identities=19% Similarity=0.165 Sum_probs=74.0
Q ss_pred ccCCCcchhHHHHHHHHHhhCC---cEEEEcCCCCHHHH-------HHHHHHHhcCCeEEEEEcCcchhHHhhchHHHHH
Q 019702 180 MQVPEPSLQHKVMIEAVENHMP---EVIIVDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDL 249 (337)
Q Consensus 180 ~~~~S~g~k~r~~ia~al~~~P---~vlilDEp~~~ld~-------~~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~l 249 (337)
...+|+||+||++||++|+.+| ++|||||||+++|. +.+..+++.|.|||+++|+++++ ..||+++ +
T Consensus 861 ~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i-~~aDrIi--v 937 (993)
T 2ygr_A 861 APTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIEHNLDVI-KTSDWII--D 937 (993)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHH-TTCSEEE--E
T ss_pred cccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHH-HhCCEEE--E
Confidence 3457999999999999999875 99999999999995 34556667899999999999987 5799999 8
Q ss_pred h------cCceEEEecCHHHHHHh
Q 019702 250 I------GGVDTVTLGDEEARARR 267 (337)
Q Consensus 250 l------~~G~iv~~g~~~~~~~~ 267 (337)
| ++|++++.|++++++..
T Consensus 938 L~p~gg~~~G~Iv~~G~~~el~~~ 961 (993)
T 2ygr_A 938 LGPEGGAGGGTVVAQGTPEDVAAV 961 (993)
T ss_dssp EESSSTTSCSEEEEEECHHHHHHC
T ss_pred ECCCcCCCCCEEEEecCHHHHHhC
Confidence 9 68999999999998764
No 70
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=99.81 E-value=6.7e-19 Score=176.15 Aligned_cols=210 Identities=18% Similarity=0.188 Sum_probs=142.6
Q ss_pred hcccCCCCeeEEEEecCC-ccEEEEeCccCceeccCCCCCHHHHHHHHHHHhccCC----CcceEecCce---eEEEEEe
Q 019702 20 QNDSKRGQLLEVILDLGR-LPEARYLGEFGGKYLRSTEVSVEELEYAQSAVGEFGG----DNRAGIEGTL---HRISAIR 91 (337)
Q Consensus 20 ~~~~~~~~~~ei~l~~g~-~~~~~~~g~~~~~~~~~~~~t~~~l~~~~~~~~~~~~----~~~~~~~g~~---~rv~~~~ 91 (337)
+++..+..++|||++... |++++. +..+ .......++.+++..+++++....+ ..++.++.++ +|+++..
T Consensus 136 ~~ll~d~~v~dI~in~~~~~v~v~~-~~~g-~~~~~~~~~~~~l~~li~~i~~~~g~~i~~~~P~~~~~lp~g~Rv~~~~ 213 (511)
T 2oap_1 136 DPLMEDTNVEDISCDGYNIPIFIYH-QKYG-NVETNIVLDQEKLDRMVLRLTQRSGKHISIANPIVDATLPDGSRLQATF 213 (511)
T ss_dssp HHHHHCTTEEEEEECSTTCCCEEEE-TTTE-EEEESCCCCHHHHHHHHHHHHHHTTCCCBTTBCEEEEEETTTEEEEEEC
T ss_pred HHHhcCCCceEEEEECCCCEEEEEE-ccCc-EEecCccCCHHHHHHHHHHHHHHcCCCccccCcceeeecCCCeEEEEEE
Confidence 333446789999999977 777754 3322 2223456799999999888754322 2233333322 6888775
Q ss_pred ----eCCCcEeeEEEEECCccc--------------cchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCe
Q 019702 92 ----SRKGAIVGLTCRVGRAVS--------------GHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKR 153 (337)
Q Consensus 92 ----~~~g~i~~l~~r~~~~~~--------------~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~ 153 (337)
...|. .+++|..+... ..++.+++.+++|++++|+|||||||||||++|+|+++|+ .+
T Consensus 214 ~~~~~~~G~--~i~IR~~~~~~~~~~~l~~~G~~~~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~--~g 289 (511)
T 2oap_1 214 GTEVTPRGS--SFTIRKFTIEPLTPIDLIEKGTVPSGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPD--AK 289 (511)
T ss_dssp SSSSCTTCS--EEEEEECCCCCCCHHHHHHTTSSCHHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTT--CC
T ss_pred CCCccCCCC--EEEEEecCCCCCChhhHHhcCCCCHHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCC--CC
Confidence 23577 89999855432 1356677888999999999999999999999999999875 56
Q ss_pred EEEEcCCcccccCCCCcccccccchhccCCCcchhHHHHHHHHHhhCCcEEEEcCCCCHHHHHHHHHHHhcCCeEEEEEc
Q 019702 154 VVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRSIAERGVMLIGTAH 233 (337)
Q Consensus 154 i~~v~~~~ei~~~~~~~~~~~~~~~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~~ld~~~l~~~~~~G~tvi~t~H 233 (337)
++++++..++.... .+.+....+..+..++....-.+..+|.++||+++++|.+..+ ...+.++..+|+.++.|.|
T Consensus 290 iitied~~E~~~~~---~~~v~~~~r~~~~~~~~~~~~~l~~~LR~~PD~iivgEir~~E-~~~~l~a~~tGh~~~sT~H 365 (511)
T 2oap_1 290 VVSIEDTREIKLYH---ENWIAEVTRTGMGEGEIDMYDLLRAALRQRPDYIIVGEVRGRE-AQTLFQAMSTGHASYSTLH 365 (511)
T ss_dssp EEEEESSCCCCCCC---SSEEEEECBCCSSSCCBCHHHHHHTTGGGCCSEEEESCCCSTH-HHHHHHHHHTTCEEEEEEE
T ss_pred EEEEcCcccccCCC---CCeEEEEeecccccCCcCHHHHHHHhhccCCCeEEeCCcCHHH-HHHHHHhhcCCCCcccccc
Confidence 77787776664321 1111111111223334455667888999999999999999876 4444555678999999999
Q ss_pred CcchhH
Q 019702 234 GEWLEN 239 (337)
Q Consensus 234 ~~~~~~ 239 (337)
..+..+
T Consensus 366 a~~~~~ 371 (511)
T 2oap_1 366 AGDINQ 371 (511)
T ss_dssp CSSHHH
T ss_pred cCCHHH
Confidence 976443
No 71
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.78 E-value=7.7e-20 Score=177.90 Aligned_cols=72 Identities=11% Similarity=0.061 Sum_probs=62.1
Q ss_pred CCcchhHHHHHHHHHhhCC--cEEEEcCCCCHHHHH-------HHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHh---
Q 019702 183 PEPSLQHKVMIEAVENHMP--EVIIVDEIGTEAEAH-------ACRSIAERGVMLIGTAHGEWLENIIKNPILSDLI--- 250 (337)
Q Consensus 183 ~S~g~k~r~~ia~al~~~P--~vlilDEp~~~ld~~-------~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll--- 250 (337)
+|+||+||++||++++.+| ++|||||||+++|.. .+..+. +|.+||++||+.+++ ..||+++ ++
T Consensus 296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~~~~vi~itH~~~~~-~~~d~i~--~l~k~ 371 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-DTRQVLVVTHLAQIA-ARAHHHY--KVEKQ 371 (415)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSCHHHH-TTCSEEE--EEEEE
T ss_pred cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEeCcHHHH-hhcCeEE--EEEEe
Confidence 6999999999999999999 999999999999953 344444 589999999999876 4799999 89
Q ss_pred -cCceEEEe
Q 019702 251 -GGVDTVTL 258 (337)
Q Consensus 251 -~~G~iv~~ 258 (337)
++|+++..
T Consensus 372 ~~~G~~~~~ 380 (415)
T 4aby_A 372 VEDGRTVSH 380 (415)
T ss_dssp EETTEEEEE
T ss_pred ccCCceEEE
Confidence 88987665
No 72
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.78 E-value=1.3e-19 Score=174.25 Aligned_cols=74 Identities=11% Similarity=0.046 Sum_probs=63.4
Q ss_pred cCCCcchhHHHHHHHHHh------hCCcEEEEcCCCCHHHHH-------HHHHHHhcCCeEEEEEcCcchhHHhhchHHH
Q 019702 181 QVPEPSLQHKVMIEAVEN------HMPEVIIVDEIGTEAEAH-------ACRSIAERGVMLIGTAHGEWLENIIKNPILS 247 (337)
Q Consensus 181 ~~~S~g~k~r~~ia~al~------~~P~vlilDEp~~~ld~~-------~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~ 247 (337)
..+|+||+||++||+|++ .+|++|||||||+++|.. .+..+.+.|.|||++||++++ ...||+++
T Consensus 278 ~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~-~~~~d~~~- 355 (365)
T 3qf7_A 278 RGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREF-SEAFDRKL- 355 (365)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHH-HTTCSCEE-
T ss_pred hhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHH-HHhCCEEE-
Confidence 358999999999999999 699999999999999953 344455679999999999987 56799999
Q ss_pred HHhcCceEEE
Q 019702 248 DLIGGVDTVT 257 (337)
Q Consensus 248 ~ll~~G~iv~ 257 (337)
++.+|+++.
T Consensus 356 -~l~~G~i~~ 364 (365)
T 3qf7_A 356 -RITGGVVVN 364 (365)
T ss_dssp -EEETTEEC-
T ss_pred -EEECCEEEe
Confidence 999999864
No 73
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.77 E-value=1.6e-17 Score=159.46 Aligned_cols=221 Identities=15% Similarity=0.142 Sum_probs=143.2
Q ss_pred hcccCCCCeeEEEEecCCccEEEEeCccCceeccCCCCCHHHHHHHHHHHhccCC--------CcceEecCceeEEEEEe
Q 019702 20 QNDSKRGQLLEVILDLGRLPEARYLGEFGGKYLRSTEVSVEELEYAQSAVGEFGG--------DNRAGIEGTLHRISAIR 91 (337)
Q Consensus 20 ~~~~~~~~~~ei~l~~g~~~~~~~~g~~~~~~~~~~~~t~~~l~~~~~~~~~~~~--------~~~~~~~g~~~rv~~~~ 91 (337)
+++..+..++||++..+.++.+.+.|.+. ......+|.+++..++..+..+.+ .....+.+ ..|++.+.
T Consensus 30 ~~~l~d~~v~dI~in~~~~v~v~~~G~~~--~~~~~~lt~~~l~~~~~~~~~~~~~~l~~~~~~~~~~l~~-~~Ri~~vl 106 (361)
T 2gza_A 30 RPWLDDPQITEVCVNRPGEVFCERASAWE--YYAVPNLDYEHLISLGTATARFVDQDISDSRPVLSAILPM-GERIQIVR 106 (361)
T ss_dssp HHHHSCTTEEEEEESSTTEEEEEETTEEE--EEECTTCCHHHHHHHHHHHHHHTTCCCSSSSCEEEEECTT-SCEEEEEC
T ss_pred HHHhcCCCCEEEEEcCCCEEEEEECCeEE--EeCCCCCCHHHHHHHHHHHHHHcCCccCCCCCeEEEEcCC-CcEEEEEe
Confidence 33445678999999998889888887642 333356899999988776643311 11122222 35888887
Q ss_pred ----eCCCcEeeEEEEECCcc-c--------------------------c---------chhhhhhcccCCCEEEEEcCC
Q 019702 92 ----SRKGAIVGLTCRVGRAV-S--------------------------G---------HIDMVYDLLHYGKSILFVGRP 131 (337)
Q Consensus 92 ----~~~g~i~~l~~r~~~~~-~--------------------------~---------~~~~l~~~v~~g~~v~IiGpn 131 (337)
..++. .+++|..... . . .++.+++.+++|++++|+|||
T Consensus 107 ~p~~~~~~~--~~~ir~~~~~~itl~~l~~~g~f~~v~f~~~~Y~~~~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~s 184 (361)
T 2gza_A 107 PPACEHGTI--SVTIRKPSFTRRTLEDYAQQGFFKHVRPMSKSLTPFEQELLALKEAGDYMSFLRRAVQLERVIVVAGET 184 (361)
T ss_dssp TTTBCTTCC--EEEEECCCCCCCCHHHHHHTTTTSCCCCSCSCCCHHHHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESS
T ss_pred cCccCCCCe--EEEEEecCCCCCCHHHHHhcCCcCccccccccccchhHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCC
Confidence 22223 4555532111 1 0 127788999999999999999
Q ss_pred CCcHHHHHHHHHccccccCCCeEEEEcCCcccccCCCCcccccccch-hccCC--CcchhHHHHHHHHHhhCCcEEEEcC
Q 019702 132 GVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTAR-RMQVP--EPSLQHKVMIEAVENHMPEVIIVDE 208 (337)
Q Consensus 132 GsGKTTLL~~l~gll~~~~~~~i~~v~~~~ei~~~~~~~~~~~~~~~-~~~~~--S~g~k~r~~ia~al~~~P~vlilDE 208 (337)
|||||||+++|+|+++|+ .+.+++++..++... ... ..+.... +.... +++...+..++.++.++|+.+++||
T Consensus 185 GsGKSTll~~l~~~~~~~--~g~I~ie~~~e~~~~-~~~-~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~~~pd~~l~~e 260 (361)
T 2gza_A 185 GSGKTTLMKALMQEIPFD--QRLITIEDVPELFLP-DHP-NHVHLFYPSEAKEEENAPVTAATLLRSCLRMKPTRILLAE 260 (361)
T ss_dssp SSCHHHHHHHHHTTSCTT--SCEEEEESSSCCCCT-TCS-SEEEEECC----------CCHHHHHHHHTTSCCSEEEESC
T ss_pred CCCHHHHHHHHHhcCCCC--ceEEEECCccccCcc-ccC-CEEEEeecCccccccccccCHHHHHHHHHhcCCCEEEEcC
Confidence 999999999999999885 345555554444211 011 1111111 11111 2566788899999999999999999
Q ss_pred CCCHHHHHHHHHHHhcCC-eEEEEEcCcchhHHhhchHHHHHhcCc
Q 019702 209 IGTEAEAHACRSIAERGV-MLIGTAHGEWLENIIKNPILSDLIGGV 253 (337)
Q Consensus 209 p~~~ld~~~l~~~~~~G~-tvi~t~H~~~~~~~~~d~v~~~ll~~G 253 (337)
++...-.+.+..+ .+|+ +++.++|+.+ +...++|+. .+..+
T Consensus 261 ~r~~~~~~~l~~l-~~g~~~~l~t~H~~~-~~~~~~Rl~--~l~~~ 302 (361)
T 2gza_A 261 LRGGEAYDFINVA-ASGHGGSITSCHAGS-CELTFERLA--LMVLQ 302 (361)
T ss_dssp CCSTHHHHHHHHH-HTTCCSCEEEEECSS-HHHHHHHHH--HHHTT
T ss_pred chHHHHHHHHHHH-hcCCCeEEEEECCCC-HHHHHHHHH--HHHhc
Confidence 9986555555554 5565 6899999987 667889988 55433
No 74
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.75 E-value=9.5e-20 Score=162.08 Aligned_cols=116 Identities=12% Similarity=0.059 Sum_probs=73.1
Q ss_pred ccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEE--Ec-C----CcccccCCCCccccc-cc-------c------
Q 019702 119 LHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVI--VD-T----SNEIGGDGDIPHSAI-GT-------A------ 177 (337)
Q Consensus 119 v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~--v~-~----~~ei~~~~~~~~~~~-~~-------~------ 177 (337)
+++|++++|+||||||||||+++|+|+ +|+.+ .|.. +. . ...+++...-+...+ .. .
T Consensus 19 i~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G-~I~~~~~~~~~~~~~~~ig~v~q~~~enl~~~~~~~~~~~~~~~~~ 96 (208)
T 3b85_A 19 IDTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSK-QVSRIILTRPAVEAGEKLGFLPGTLNEKIDPYLRPLHDALRDMVEP 96 (208)
T ss_dssp HHHCSEEEEECCTTSSTTHHHHHHHHH-HHHTT-SCSEEEEEECSCCTTCCCCSSCC------CTTTHHHHHHHTTTSCT
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHhcC-CCcCC-eeeeEEecCCchhhhcceEEecCCHHHHHHHHHHHHHHHHHHhccH
Confidence 488999999999999999999999999 88743 3321 11 1 111222111110001 00 0
Q ss_pred ----hhccCCCcchhHHHHHHHHHhhCCcEEEEcCCCCHHHHHHHHHHH---hcCCeEEEEEcCcchhH
Q 019702 178 ----RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRSIA---ERGVMLIGTAHGEWLEN 239 (337)
Q Consensus 178 ----~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~~ld~~~l~~~~---~~G~tvi~t~H~~~~~~ 239 (337)
..... ..||+||++||+||+.+|++|||||||++ ....+..+. +.|.||| +||+++.++
T Consensus 97 ~~~~~~l~~-glGq~qrv~lAraL~~~p~lllLDEPts~-~~~~l~~~l~~l~~g~tii-vtHd~~~~~ 162 (208)
T 3b85_A 97 EVIPKLMEA-GIVEVAPLAYMRGRTLNDAFVILDEAQNT-TPAQMKMFLTRLGFGSKMV-VTGDITQVD 162 (208)
T ss_dssp THHHHHHHT-TSEEEEEGGGGTTCCBCSEEEEECSGGGC-CHHHHHHHHTTBCTTCEEE-EEEC-----
T ss_pred HHHHHHHHh-CCchHHHHHHHHHHhcCCCEEEEeCCccc-cHHHHHHHHHHhcCCCEEE-EECCHHHHh
Confidence 00111 34999999999999999999999999998 543333322 4588999 999998665
No 75
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.74 E-value=2.2e-18 Score=149.52 Aligned_cols=128 Identities=20% Similarity=0.144 Sum_probs=80.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHccccccCCCeEE-EEc--C-CcccccCC---CCccccc---------ccchhccCCCcch
Q 019702 124 SILFVGRPGVGKTTVMREIARVLSDEFQKRVV-IVD--T-SNEIGGDG---DIPHSAI---------GTARRMQVPEPSL 187 (337)
Q Consensus 124 ~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~-~v~--~-~~ei~~~~---~~~~~~~---------~~~~~~~~~S~g~ 187 (337)
.++|+||||||||||+++|+|++.....+... -.. . ...+++.. ......+ ...+....+|+||
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~~g~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lSgG~ 81 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLVGSYGVNVQYFE 81 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCSSEETTEEECHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcCCCEEhhhhccccccceeEEEeecCcHHHHHHHhhcCCccccccccccCcCHHH
Confidence 58999999999999999999998522111000 000 0 00111100 0000000 0112344579999
Q ss_pred hHHHHHHHH-----HhhCCcEEEEcC--CCCHHHHHH---HHHHH-hcCCeEEEEEc---CcchhHHhhchHHHHHhcCc
Q 019702 188 QHKVMIEAV-----ENHMPEVIIVDE--IGTEAEAHA---CRSIA-ERGVMLIGTAH---GEWLENIIKNPILSDLIGGV 253 (337)
Q Consensus 188 k~r~~ia~a-----l~~~P~vlilDE--p~~~ld~~~---l~~~~-~~G~tvi~t~H---~~~~~~~~~d~v~~~ll~~G 253 (337)
+||+++|+| +..+|++|++|| |++++|... +..+. +.+.++|+++| +.+++..+|++ .+|
T Consensus 82 ~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~~~~~~i~~~H~~h~~~~~~~i~~r------~~~ 155 (178)
T 1ye8_A 82 ELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKEIRRL------PGA 155 (178)
T ss_dssp HHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTCTTSEEEEECCSSCCSHHHHHHHTC------TTC
T ss_pred HHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhcCCCeEEEEEccCCCchHHHHHHhc------CCc
Confidence 999999996 999999999999 999999543 44443 34677888885 77777766654 346
Q ss_pred eEEE
Q 019702 254 DTVT 257 (337)
Q Consensus 254 ~iv~ 257 (337)
+++.
T Consensus 156 ~i~~ 159 (178)
T 1ye8_A 156 VLIE 159 (178)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6665
No 76
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.73 E-value=5.5e-17 Score=158.44 Aligned_cols=199 Identities=18% Similarity=0.199 Sum_probs=132.7
Q ss_pred CCeeEEEEec---CCccEEEEeCccCceeccCCC--CCHHHHHHHHHHHhc-------cCCCcceE--ecCc--eeEEEE
Q 019702 26 GQLLEVILDL---GRLPEARYLGEFGGKYLRSTE--VSVEELEYAQSAVGE-------FGGDNRAG--IEGT--LHRISA 89 (337)
Q Consensus 26 ~~~~ei~l~~---g~~~~~~~~g~~~~~~~~~~~--~t~~~l~~~~~~~~~-------~~~~~~~~--~~g~--~~rv~~ 89 (337)
.++||||+.. +.++.+|++|.+. .+...+ +.. .+...++.+.. +..+.++. +.|. ++|++.
T Consensus 47 ~~aSDIhi~~~~~~~~v~~RidG~l~--~~~~~~~~~~~-~l~~~ik~~a~~~~~e~~~~q~g~~~~~~~~~~~~~Rvs~ 123 (418)
T 1p9r_A 47 EGASDIHIETFEKTLSIRFRVDGVLR--EVLAPSRKLSS-LLVSRVKVMAKLDIAEKRVPQDGRISLRIGGRAVDVRVST 123 (418)
T ss_dssp HTCSEEEEEEETTEEEEEEEETTEEE--EEECCCGGGHH-HHHHHHHHHTTCCTTCCSSCEEEEEEC-----CEEEEEEE
T ss_pred CCCeeEEEEecCCceeEEEEECCEEE--ECCcCchhhhH-HHHHHHHHHcCCChHHhcCCCCceEEEEECCceEEEEEEE
Confidence 5799999999 7799999999864 333222 222 23222233221 22244444 3343 689999
Q ss_pred EeeCCCcEeeEEEEECCcc--ccchhhh----------hh-cccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEE
Q 019702 90 IRSRKGAIVGLTCRVGRAV--SGHIDMV----------YD-LLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVI 156 (337)
Q Consensus 90 ~~~~~g~i~~l~~r~~~~~--~~~~~~l----------~~-~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~ 156 (337)
+....|. .+++|..... ...++++ .. ...+|++++|+|||||||||||++|+|++++. .++|.+
T Consensus 124 ~~~~~g~--~~viR~~~~~~~~~~l~~Lg~~~~~~~~L~~l~~~~ggii~I~GpnGSGKTTlL~allg~l~~~-~g~I~~ 200 (418)
T 1p9r_A 124 MPSSHGE--RVVMRLLDKNATRLDLHSLGMTAHNHDNFRRLIKRPHGIILVTGPTGSGKSTTLYAGLQELNSS-ERNILT 200 (418)
T ss_dssp ECCTTSC--EEEECCEETTTTCCCGGGSCCCHHHHHHHHHHHTSSSEEEEEECSTTSCHHHHHHHHHHHHCCT-TSCEEE
T ss_pred eecCCCc--EEEEEecccccCCCCHHHcCCCHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHhhcCCC-CCEEEE
Confidence 9998888 8998865431 1112221 11 13678999999999999999999999999887 678988
Q ss_pred EcCCcccccCCCCcccccccchhccCCCcchhHHHHHHHHHhhCCcEEEEcCCCCHHHHHHHHHHHhcCCeEEEEEcCcc
Q 019702 157 VDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRSIAERGVMLIGTAHGEW 236 (337)
Q Consensus 157 v~~~~ei~~~~~~~~~~~~~~~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~~ld~~~l~~~~~~G~tvi~t~H~~~ 236 (337)
++++.++... .+.+..+. . ..|....-++..++.++|++++++|++..+.+.....+..+|+.++.|.|..+
T Consensus 201 ~ed~ie~~~~-~~~q~~v~--~-----~~g~~f~~~lr~~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~ 272 (418)
T 1p9r_A 201 VEDPIEFDID-GIGQTQVN--P-----RVDMTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNT 272 (418)
T ss_dssp EESSCCSCCS-SSEEEECB--G-----GGTBCHHHHHHHHGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSS
T ss_pred ecccchhccC-CcceEEEc--c-----ccCcCHHHHHHHHhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhh
Confidence 8877665321 11111111 0 11334556788899999999999999998887766677788999988889876
Q ss_pred hh
Q 019702 237 LE 238 (337)
Q Consensus 237 ~~ 238 (337)
..
T Consensus 273 ~~ 274 (418)
T 1p9r_A 273 AV 274 (418)
T ss_dssp SH
T ss_pred HH
Confidence 44
No 77
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.64 E-value=1.7e-17 Score=161.57 Aligned_cols=143 Identities=12% Similarity=0.093 Sum_probs=97.6
Q ss_pred chhhhhhcccCCC--------------------EEEEEcCCCCcHHHHHHHHHccccccCCCe------E---EEEcCCc
Q 019702 111 HIDMVYDLLHYGK--------------------SILFVGRPGVGKTTVMREIARVLSDEFQKR------V---VIVDTSN 161 (337)
Q Consensus 111 ~~~~l~~~v~~g~--------------------~v~IiGpnGsGKTTLL~~l~gll~~~~~~~------i---~~v~~~~ 161 (337)
.++++++.+++|+ +++|+||||||||||+++|+|+++|+.+.. + .++.+..
T Consensus 38 ~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~ 117 (413)
T 1tq4_A 38 ILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHP 117 (413)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECS
T ss_pred HhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEecccc
Confidence 4889999999999 999999999999999999999998773210 0 1222211
Q ss_pred cc---cc--CCCC--ccccc---------ccchhccCCCcc--hhHHHHHHHHHhh----------CCcEEEEcCCCCHH
Q 019702 162 EI---GG--DGDI--PHSAI---------GTARRMQVPEPS--LQHKVMIEAVENH----------MPEVIIVDEIGTEA 213 (337)
Q Consensus 162 ei---~~--~~~~--~~~~~---------~~~~~~~~~S~g--~k~r~~ia~al~~----------~P~vlilDEp~~~l 213 (337)
.+ .. ..++ +...+ ........+|+| ++||+++|+++.. +||++++||||+++
T Consensus 118 ~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~~~~~~~lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgL 197 (413)
T 1tq4_A 118 NIPNVVFWDLPGIGSTNFPPDTYLEKMKFYEYDFFIIISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEP 197 (413)
T ss_dssp SCTTEEEEECCCGGGSSCCHHHHHHHTTGGGCSEEEEEESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCC
T ss_pred ccCCeeehHhhcccchHHHHHHHHHHcCCCccCCeEEeCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccC
Confidence 11 00 0000 00000 000111126888 9999999999999 99999999999999
Q ss_pred HH-------HHHHHHH-----hcC----CeEEEEEcCcch--hHHhhchHHHHHhcCce
Q 019702 214 EA-------HACRSIA-----ERG----VMLIGTAHGEWL--ENIIKNPILSDLIGGVD 254 (337)
Q Consensus 214 d~-------~~l~~~~-----~~G----~tvi~t~H~~~~--~~~~~d~v~~~ll~~G~ 254 (337)
|. +.+..+. +.| .++++++|.++. ++.+|+++.. .+..|.
T Consensus 198 D~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~-~Lpeg~ 255 (413)
T 1tq4_A 198 QTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLIS-DLPIYK 255 (413)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHH-HSCGGG
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHH-hCccch
Confidence 83 3444442 333 568889999887 8899999986 454443
No 78
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.64 E-value=1.5e-16 Score=168.74 Aligned_cols=141 Identities=19% Similarity=0.156 Sum_probs=97.4
Q ss_pred chhhhhhcccCCCEEEEEcCCCCcHHHHHHHH--------HccccccCCCeEEEEcCCcccccCCCCcccccccchhccC
Q 019702 111 HIDMVYDLLHYGKSILFVGRPGVGKTTVMREI--------ARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQV 182 (337)
Q Consensus 111 ~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l--------~gll~~~~~~~i~~v~~~~ei~~~~~~~~~~~~~~~~~~~ 182 (337)
.++++++.+.+|++++|+|||||||||+||.+ .|...|.....+..++ .+....+... ....-
T Consensus 651 v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~~~~~d---~i~~~ig~~d------~l~~~ 721 (934)
T 3thx_A 651 IPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEVSIVD---CILARVGAGD------SQLKG 721 (934)
T ss_dssp CCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEEEECCS---EEEEECC--------------
T ss_pred ecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCccccccccchHHH---HHHHhcCchh------hHHHh
Confidence 37788899999999999999999999999999 5554443211111111 1100000000 11233
Q ss_pred CCcchhHHHHHHHHH--hhCCcEEEEcCCCCHHHHH--------HHHHHHh-cCCeEEEEEcCcchhHHhhchHHHHHhc
Q 019702 183 PEPSLQHKVMIEAVE--NHMPEVIIVDEIGTEAEAH--------ACRSIAE-RGVMLIGTAHGEWLENIIKNPILSDLIG 251 (337)
Q Consensus 183 ~S~g~k~r~~ia~al--~~~P~vlilDEp~~~ld~~--------~l~~~~~-~G~tvi~t~H~~~~~~~~~d~v~~~ll~ 251 (337)
+|.++.++..+++++ +.+|++||+|||++++|.. .+..+.+ .|.++|++||+.++. .+|+++. .+.
T Consensus 722 lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~-~lad~~~--~v~ 798 (934)
T 3thx_A 722 VSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELT-ALANQIP--TVN 798 (934)
T ss_dssp -CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGG-GGGGTCT--TEE
T ss_pred HhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHH-HHhcccc--eeE
Confidence 577788888888888 8999999999999998842 2344555 499999999998766 5899988 888
Q ss_pred CceEEEecCHHH
Q 019702 252 GVDTVTLGDEEA 263 (337)
Q Consensus 252 ~G~iv~~g~~~~ 263 (337)
+|++...+++++
T Consensus 799 ng~v~~~~~~~~ 810 (934)
T 3thx_A 799 NLHVTALTTEET 810 (934)
T ss_dssp EEEEEEEEETTE
T ss_pred eeEEEEEecCCc
Confidence 899887766654
No 79
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.63 E-value=1.1e-16 Score=160.78 Aligned_cols=135 Identities=12% Similarity=0.115 Sum_probs=99.0
Q ss_pred hhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEE-EcCCcc--ccc---CCCCcccc---ccc----chhccC
Q 019702 116 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVI-VDTSNE--IGG---DGDIPHSA---IGT----ARRMQV 182 (337)
Q Consensus 116 ~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~-v~~~~e--i~~---~~~~~~~~---~~~----~~~~~~ 182 (337)
+..+.+|++++|+||||||||||++.++|+..+. +.++.+ ..+... +.. ..++.... .+. ......
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~~vi~~~~ee~~~~l~~~~~~~g~~~~~~~~~g~~~~~~~~p~~ 353 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACAN-KERAILFAYEESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPES 353 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TCCEEEEESSSCHHHHHHHHHTTSCCHHHHHHTTSEEECCCCGGG
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CCCEEEEEEeCCHHHHHHHHHHcCCCHHHHHhCCCEEEEEecccc
Confidence 4468899999999999999999999999999875 555544 433321 100 00111000 000 112344
Q ss_pred CCcchhHHHHHHHHHhhCCcEEEEcCCCCHHHHH------------HHHHHHhcCCeEEEEEcCc----------chhHH
Q 019702 183 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAH------------ACRSIAERGVMLIGTAHGE----------WLENI 240 (337)
Q Consensus 183 ~S~g~k~r~~ia~al~~~P~vlilDEp~~~ld~~------------~l~~~~~~G~tvi~t~H~~----------~~~~~ 240 (337)
+|+|++|++++++++..+|++||+| |++++|.. .+..+++.|.|+|+++|+. ..+..
T Consensus 354 LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~ 432 (525)
T 1tf7_A 354 AGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHIST 432 (525)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTT
T ss_pred CCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHhCCCEEEEEECcccccCcccccCcccce
Confidence 7999999999999999999999999 99998843 3455567799999999998 67778
Q ss_pred hhchHHHHHhcCce
Q 019702 241 IKNPILSDLIGGVD 254 (337)
Q Consensus 241 ~~d~v~~~ll~~G~ 254 (337)
+||+++ +|..|+
T Consensus 433 ~~D~vi--~L~~ge 444 (525)
T 1tf7_A 433 ITDTII--LLQYVE 444 (525)
T ss_dssp TCSEEE--EEEEEE
T ss_pred eeeEEE--EEEEEE
Confidence 899999 887775
No 80
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.63 E-value=6.7e-17 Score=173.10 Aligned_cols=154 Identities=14% Similarity=0.093 Sum_probs=95.8
Q ss_pred EEEEE-CCccccchhhhhhcccC-------CCEEEEEcCCCCcHHHHHHHHHccccccCCCeEE-EEcCCcc-cccCCCC
Q 019702 100 LTCRV-GRAVSGHIDMVYDLLHY-------GKSILFVGRPGVGKTTVMREIARVLSDEFQKRVV-IVDTSNE-IGGDGDI 169 (337)
Q Consensus 100 l~~r~-~~~~~~~~~~l~~~v~~-------g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~-~v~~~~e-i~~~~~~ 169 (337)
++++| +... .++++++.+.+ |++++|+||||||||||||.+ |++.+- .+++ ++++... +.....+
T Consensus 761 l~~~~~~~~~--v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~~--aqiG~~Vpq~~~~l~v~d~I 835 (1022)
T 2o8b_B 761 ITKTFFGDDF--IPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAVM--AQMGCYVPAEVCRLTPIDRV 835 (1022)
T ss_dssp ------CCCC--CCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHHH--HTTTCCEESSEEEECCCSBE
T ss_pred EEEEecCCce--EeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHHH--hheeEEeccCcCCCCHHHHH
Confidence 77777 4333 48899998876 899999999999999999999 988653 1122 3443221 1100000
Q ss_pred cccccccc----hhccCCCcchhHHHHHHHHHhhCCcEEEEcCCCCHHHH--------HHHHHHHhc-CCeEEEEEcCcc
Q 019702 170 PHSAIGTA----RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEA--------HACRSIAER-GVMLIGTAHGEW 236 (337)
Q Consensus 170 ~~~~~~~~----~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~~ld~--------~~l~~~~~~-G~tvi~t~H~~~ 236 (337)
. ..++.. .....++.+++ +++++++++.+|+++|||||++++|. ..+..+.+. |.++|++||+.+
T Consensus 836 ~-~rig~~d~~~~~~stf~~em~-~~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~e 913 (1022)
T 2o8b_B 836 F-TRLGASDRIMSGESTFFVELS-ETASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHS 913 (1022)
T ss_dssp E-EECC---------CHHHHHHH-HHHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHH
T ss_pred H-HHcCCHHHHhhchhhhHHHHH-HHHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHH
Confidence 0 001100 01112344444 58999999999999999999988763 234556665 999999999999
Q ss_pred hhHHhhchHHHHHhcCceEE--EecCHHH
Q 019702 237 LENIIKNPILSDLIGGVDTV--TLGDEEA 263 (337)
Q Consensus 237 ~~~~~~d~v~~~ll~~G~iv--~~g~~~~ 263 (337)
++..+++++. ++ .|++. ..|++++
T Consensus 914 l~~~~~d~~~--v~-~g~~~~~~~~~~~~ 939 (1022)
T 2o8b_B 914 LVEDYSQNVA--VR-LGHMACMVENECED 939 (1022)
T ss_dssp HHHHTSSCSS--EE-EEEEEEC-------
T ss_pred HHHHhCCcce--ee-cCeEEEEEecCccc
Confidence 9999999987 65 47766 4455544
No 81
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.63 E-value=6.8e-16 Score=143.49 Aligned_cols=142 Identities=18% Similarity=0.187 Sum_probs=92.9
Q ss_pred chhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEcCCc---ccc----c-CCCCcccc---------
Q 019702 111 HIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSN---EIG----G-DGDIPHSA--------- 173 (337)
Q Consensus 111 ~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~~~~---ei~----~-~~~~~~~~--------- 173 (337)
.++.+++.+++|++++|+||||||||||++.|++.+.+..+..+.++.... ++. . ....+...
T Consensus 24 ~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~~~~~~~~r~~~~~~~~~~~~~~~l~~~~~ 103 (296)
T 1cr0_A 24 GINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEESVEETAEDLIGLHNRVRLRQSDSLKREII 103 (296)
T ss_dssp THHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSSCHHHHHHHHHHHHTTCCGGGCHHHHHHHH
T ss_pred HHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcCCHHHHHHHHHHHHcCCChhhccccccCCC
Confidence 488999999999999999999999999999999999887554676664321 110 0 00111000
Q ss_pred -----------------cccchhccCCCcch-hHHHHHHHHHhhCCcEEEEcCCCC---H---HHH--------HHHHHH
Q 019702 174 -----------------IGTARRMQVPEPSL-QHKVMIEAVENHMPEVIIVDEIGT---E---AEA--------HACRSI 221 (337)
Q Consensus 174 -----------------~~~~~~~~~~S~g~-k~r~~ia~al~~~P~vlilDEp~~---~---ld~--------~~l~~~ 221 (337)
+.........+.++ ++++. ++++.++|++||+|||++ + +|. +.++.+
T Consensus 104 ~~~~~~~~~~~~l~~~~l~i~~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~~d~~~~~~~i~~~L~~l 182 (296)
T 1cr0_A 104 ENGKFDQWFDELFGNDTFHLYDSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGF 182 (296)
T ss_dssp HHTHHHHHHHHHHSSSCEEEECCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-----------CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhccCCEEEECCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCCCCHHHHHHHHHHHHHHH
Confidence 00000001234455 45555 888999999999999999 4 332 234455
Q ss_pred H-hcCCeEEEEEcCc--c--------------------hhHHhhchHHHHHhcCceE
Q 019702 222 A-ERGVMLIGTAHGE--W--------------------LENIIKNPILSDLIGGVDT 255 (337)
Q Consensus 222 ~-~~G~tvi~t~H~~--~--------------------~~~~~~d~v~~~ll~~G~i 255 (337)
+ +.|++||+++|+. + .+..+||+++ ++++|+.
T Consensus 183 a~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi--~L~~~~~ 237 (296)
T 1cr0_A 183 AKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTII--ALERNQQ 237 (296)
T ss_dssp HHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEE--EEEEC--
T ss_pred HHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEE--EEecCcc
Confidence 5 4599999999995 4 5677899999 8877763
No 82
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.63 E-value=2.1e-16 Score=142.23 Aligned_cols=130 Identities=16% Similarity=0.100 Sum_probs=77.0
Q ss_pred cccCCCEEEEEcCCCCcHHHHHHHHH--ccccccCCCeEEEEcCCcccc-------cCCCCcccc-----cccch-----
Q 019702 118 LLHYGKSILFVGRPGVGKTTVMREIA--RVLSDEFQKRVVIVDTSNEIG-------GDGDIPHSA-----IGTAR----- 178 (337)
Q Consensus 118 ~v~~g~~v~IiGpnGsGKTTLL~~l~--gll~~~~~~~i~~v~~~~ei~-------~~~~~~~~~-----~~~~~----- 178 (337)
-+++|++++|+||||||||||+++|+ +++.+. ..+.++....... ..+..++.. +....
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 103 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYG--EPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIAIVDGVSSV 103 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHC--CCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEEEEC-----
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCC--CeEEEEEccCCHHHHHHHHHHcCCChHHHhhcCCEEEEEccccc
Confidence 68999999999999999999999999 654443 3333333211100 000011100 00000
Q ss_pred ----------hccCCCcchhHHHHHHHHHhhCCcEEEEcCCCCHHH-----H-------HHHHHHHhcCCeEEEEEcCcc
Q 019702 179 ----------RMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAE-----A-------HACRSIAERGVMLIGTAHGEW 236 (337)
Q Consensus 179 ----------~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~~ld-----~-------~~l~~~~~~G~tvi~t~H~~~ 236 (337)
.....+..+............+|+++++|||++.+| . +.+..+++.|.|||+++|+.+
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~~~ 183 (251)
T 2ehv_A 104 VGLPSEEKFVLEDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPD 183 (251)
T ss_dssp --------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC-
T ss_pred cccccccceeccCcccHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 000011122223333444468999999999999986 1 334556677999999999998
Q ss_pred hh---------HHhh-chHHHHHhc
Q 019702 237 LE---------NIIK-NPILSDLIG 251 (337)
Q Consensus 237 ~~---------~~~~-d~v~~~ll~ 251 (337)
.+ ..+| |+++ +++
T Consensus 184 ~~~~~~~~~~i~~~~aD~vi--~l~ 206 (251)
T 2ehv_A 184 PQHGKLSRYGIEEFIARGVI--VLD 206 (251)
T ss_dssp ---CCSSSSSCGGGGCSEEE--EEE
T ss_pred CCcccccccChhhEeeeEEE--EEe
Confidence 87 5677 9888 664
No 83
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.60 E-value=2.4e-16 Score=147.77 Aligned_cols=117 Identities=17% Similarity=0.158 Sum_probs=81.5
Q ss_pred hhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEcCCc----------------ccccCCC-----Ccc
Q 019702 113 DMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSN----------------EIGGDGD-----IPH 171 (337)
Q Consensus 113 ~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~~~~----------------ei~~~~~-----~~~ 171 (337)
..+++.+++|++++|+||||||||||++.|+|++.|+ ++.|.+..... .+++... .+.
T Consensus 91 ~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~-~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~ 169 (302)
T 3b9q_A 91 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNE-GTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAA 169 (302)
T ss_dssp CSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHT-TCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHH
T ss_pred cccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHc-CCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHH
Confidence 3567778899999999999999999999999999887 56676654321 0111100 110
Q ss_pred cc----ccc----------ch----------hccCCCcchhHHHHHHHHHhhCCc--EEEEcCCCCHHHH-HHHHHHHh-
Q 019702 172 SA----IGT----------AR----------RMQVPEPSLQHKVMIEAVENHMPE--VIIVDEIGTEAEA-HACRSIAE- 223 (337)
Q Consensus 172 ~~----~~~----------~~----------~~~~~S~g~k~r~~ia~al~~~P~--vlilDEp~~~ld~-~~l~~~~~- 223 (337)
.. +.. .. .+..+| +||+++|+|+..+|+ +|++| ||+++|. ..+..+.+
T Consensus 170 ~~v~e~l~~~~~~~~d~~lldt~gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-ptsglD~~~~~~~~~~~ 245 (302)
T 3b9q_A 170 TVLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQAREFNEV 245 (302)
T ss_dssp HHHHHHHHHHHHTTCSEEEECCCCCSSCCHHHHHHHH---HHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcchHHhcCCCCcchhHHHHHHH---HHHHHHHHhhccCCCeeEEEEe-CCCCcCHHHHHHHHHHh
Confidence 00 000 00 011123 789999999999999 99999 9999995 34455554
Q ss_pred cCCeEEEEEcC
Q 019702 224 RGVMLIGTAHG 234 (337)
Q Consensus 224 ~G~tvi~t~H~ 234 (337)
.|.++|++||.
T Consensus 246 ~g~t~iiiThl 256 (302)
T 3b9q_A 246 VGITGLILTKL 256 (302)
T ss_dssp TCCCEEEEECC
T ss_pred cCCCEEEEeCC
Confidence 59999999994
No 84
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.60 E-value=1.9e-15 Score=142.58 Aligned_cols=79 Identities=8% Similarity=0.036 Sum_probs=58.4
Q ss_pred cCCCcchhHHHHHHHHHh----hCCcEEEEcCCCCHHHHH-------HHHHHHhcCCeEEEEEcCcchhHHhhchH--HH
Q 019702 181 QVPEPSLQHKVMIEAVEN----HMPEVIIVDEIGTEAEAH-------ACRSIAERGVMLIGTAHGEWLENIIKNPI--LS 247 (337)
Q Consensus 181 ~~~S~g~k~r~~ia~al~----~~P~vlilDEp~~~ld~~-------~l~~~~~~G~tvi~t~H~~~~~~~~~d~v--~~ 247 (337)
..+|+||+|+++||++++ .+|++||+||||+++|.. .+..+ ..|.++|++||+.+ ....||++ +
T Consensus 218 ~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~-~~~~~vi~~tH~~~-~~~~~d~~~~v- 294 (322)
T 1e69_A 218 SLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKEN-SKHTQFIVITHNKI-VMEAADLLHGV- 294 (322)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHH-TTTSEEEEECCCTT-GGGGCSEEEEE-
T ss_pred hhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCCeEEEEECCHH-HHhhCceEEEE-
Confidence 457999999999999997 578999999999999953 23333 34789999999976 44578875 5
Q ss_pred HHhcCc-eEEEecCHHH
Q 019702 248 DLIGGV-DTVTLGDEEA 263 (337)
Q Consensus 248 ~ll~~G-~iv~~g~~~~ 263 (337)
++.+| ..+...+.++
T Consensus 295 -~~~~g~s~~~~~~~~~ 310 (322)
T 1e69_A 295 -TMVNGVSAIVPVEVEK 310 (322)
T ss_dssp -EESSSCEEEEECCC--
T ss_pred -EEeCCEEEEEEEEcch
Confidence 55555 4555555544
No 85
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.57 E-value=5.7e-18 Score=158.74 Aligned_cols=142 Identities=11% Similarity=0.079 Sum_probs=98.2
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEE-EEcCCcccccCCCCcc-cc-
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVV-IVDTSNEIGGDGDIPH-SA- 173 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~-~v~~~~ei~~~~~~~~-~~- 173 (337)
+++++++|+ . .+++++++.+++|++++|+||||||||||+++|+|++ .+.|. ++.+...+... .+.. +.
T Consensus 104 ~~~vs~~y~-~--~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~----~G~I~~~v~q~~~lf~~-ti~~~ni~ 175 (305)
T 2v9p_A 104 YQNIELITF-I--NALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL----GGSVLSFANHKSHFWLA-SLADTRAA 175 (305)
T ss_dssp HTTCCHHHH-H--HHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH----TCEEECGGGTTSGGGGG-GGTTCSCE
T ss_pred EEEEEEEcC-h--hhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc----CceEEEEecCccccccc-cHHHHhhc
Confidence 447888886 2 3499999999999999999999999999999999998 24443 34443322110 1111 00
Q ss_pred ------------ccc-c---hhccCCCcchhHHHHHHHHHhhCCcEEEEcCCCCHHHHHHHHHHHhcCCeEEEEEcCcch
Q 019702 174 ------------IGT-A---RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRSIAERGVMLIGTAHGEWL 237 (337)
Q Consensus 174 ------------~~~-~---~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~~ld~~~l~~~~~~G~tvi~t~H~~~~ 237 (337)
+.. + .....+|+||||| |+|++.+|++|| |+++|...-..+.. .+|+.+.
T Consensus 176 ~~~~~~~~~~~~i~~~L~~gldg~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~~~~i~~-------ltH~~~~ 241 (305)
T 2v9p_A 176 LVDDATHACWRYFDTYLRNALDGYPVSIDRKHK---AAVQIKAPPLLV----TSNIDVQAEDRYLY-------LHSRVQT 241 (305)
T ss_dssp EEEEECHHHHHHHHHTTTGGGGTCCEECCCSSC---CCCEECCCCEEE----EESSCSTTCGGGGG-------GTTTEEE
T ss_pred cCccccHHHHHHHHHHhHccCCccCcCHHHHHH---HHHHhCCCCEEE----ECCCCHHHHHHHHH-------HhCCHHH
Confidence 000 0 0123579999999 999999999999 99999643222221 2788876
Q ss_pred hHHhhchHHHHHhcCceEEEecCHHHH
Q 019702 238 ENIIKNPILSDLIGGVDTVTLGDEEAR 264 (337)
Q Consensus 238 ~~~~~d~v~~~ll~~G~iv~~g~~~~~ 264 (337)
. ..||++ ++++|++++.|+++++
T Consensus 242 ~-~~aD~i---vl~~G~iv~~g~~~el 264 (305)
T 2v9p_A 242 F-RFEQPC---TDESGEQPFNITDADW 264 (305)
T ss_dssp E-ECCCCC---CCC---CCCCCCHHHH
T ss_pred H-HhCCEE---EEeCCEEEEeCCHHHH
Confidence 5 578888 5789999999999987
No 86
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.56 E-value=3.1e-15 Score=132.84 Aligned_cols=134 Identities=14% Similarity=0.106 Sum_probs=76.5
Q ss_pred hcccCCCEEEEEcCCCCcHHHHHHHHHcccccc-----CCCeEEEEcCCcccc-----c----CCCCcccccccchhccC
Q 019702 117 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDE-----FQKRVVIVDTSNEIG-----G----DGDIPHSAIGTARRMQV 182 (337)
Q Consensus 117 ~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~-----~~~~i~~v~~~~ei~-----~----~~~~~~~~~~~~~~~~~ 182 (337)
.-+++|++++|+||||||||||++.|+|++.+. ..+.+.+++...... . ....++...........
T Consensus 20 ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 99 (231)
T 4a74_A 20 GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVLKHIYVARA 99 (231)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTSCHHHHHHTEEEEEC
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHHHHHHHHHcCCCHHHHhhcEEEEec
Confidence 358899999999999999999999999976542 134566665432110 0 00111100000000111
Q ss_pred CCcchh-HHHHHHHHHh-------hCCcEEEEcCCCCHHHH----------------H---HHHHHH-hcCCeEEEEEcC
Q 019702 183 PEPSLQ-HKVMIEAVEN-------HMPEVIIVDEIGTEAEA----------------H---ACRSIA-ERGVMLIGTAHG 234 (337)
Q Consensus 183 ~S~g~k-~r~~ia~al~-------~~P~vlilDEp~~~ld~----------------~---~l~~~~-~~G~tvi~t~H~ 234 (337)
.+...+ ..+..+..+. .+|++|++|||++.+|. + .+..++ +.|.|||+++|.
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~ 179 (231)
T 4a74_A 100 FNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQV 179 (231)
T ss_dssp CSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC
T ss_pred CChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeec
Confidence 222222 2233333333 49999999999998664 1 233333 459999999995
Q ss_pred cc----hhHHhhchHHHHHhcC
Q 019702 235 EW----LENIIKNPILSDLIGG 252 (337)
Q Consensus 235 ~~----~~~~~~d~v~~~ll~~ 252 (337)
.+ .+...||.++ .+++
T Consensus 180 ~~~~g~~~~~~~d~~l--~l~~ 199 (231)
T 4a74_A 180 QANGGHILAHSATLRV--YLRK 199 (231)
T ss_dssp C---------CCSEEE--EEEE
T ss_pred ccCcchhhHhhceEEE--EEEe
Confidence 54 4667777777 5554
No 87
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.56 E-value=1.4e-15 Score=145.66 Aligned_cols=116 Identities=18% Similarity=0.163 Sum_probs=81.0
Q ss_pred hhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEcCCc----------------ccccCCC-----Cccc
Q 019702 114 MVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSN----------------EIGGDGD-----IPHS 172 (337)
Q Consensus 114 ~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~~~~----------------ei~~~~~-----~~~~ 172 (337)
.+++.+++|++++|+||||||||||++.|+|++.|+ ++.|.+..... .+++... .+..
T Consensus 149 ~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~-~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~ 227 (359)
T 2og2_A 149 ELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNE-GTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT 227 (359)
T ss_dssp SCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHT-TCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHH
T ss_pred CcceecCCCeEEEEEcCCCChHHHHHHHHHhhcccc-CCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhh
Confidence 567778899999999999999999999999999887 56676654321 0111100 1100
Q ss_pred ----ccc----------cch----------hccCCCcchhHHHHHHHHHhhCCc--EEEEcCCCCHHHH-HHHHHHHh-c
Q 019702 173 ----AIG----------TAR----------RMQVPEPSLQHKVMIEAVENHMPE--VIIVDEIGTEAEA-HACRSIAE-R 224 (337)
Q Consensus 173 ----~~~----------~~~----------~~~~~S~g~k~r~~ia~al~~~P~--vlilDEp~~~ld~-~~l~~~~~-~ 224 (337)
.+. ... .+..+| +||+++++++..+|+ +|++| ||+++|. ..+..+.+ .
T Consensus 228 tv~e~l~~~~~~~~d~~lldt~Gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pttglD~~~~~~~~~~~~ 303 (359)
T 2og2_A 228 VLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQAREFNEVV 303 (359)
T ss_dssp HHHHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHHHHHHHHHT
T ss_pred hHHHHHHHHHhCCCHHHHHHhcCCChhhhhHHHHHH---HHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHHHHHHHHhc
Confidence 000 000 011124 789999999999999 99999 9999995 34455554 5
Q ss_pred CCeEEEEEcC
Q 019702 225 GVMLIGTAHG 234 (337)
Q Consensus 225 G~tvi~t~H~ 234 (337)
|.|+|++||.
T Consensus 304 g~t~iiiThl 313 (359)
T 2og2_A 304 GITGLILTKL 313 (359)
T ss_dssp CCCEEEEESC
T ss_pred CCeEEEEecC
Confidence 9999999994
No 88
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.56 E-value=3.4e-15 Score=132.41 Aligned_cols=139 Identities=14% Similarity=0.085 Sum_probs=90.5
Q ss_pred chhhhhh-cccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEcCCcc---cc----cCCCCccc----ccccch
Q 019702 111 HIDMVYD-LLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNE---IG----GDGDIPHS----AIGTAR 178 (337)
Q Consensus 111 ~~~~l~~-~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~~~~e---i~----~~~~~~~~----~~~~~~ 178 (337)
.++.+.. -+++|++++|+||||||||||++.|++...+. ++.+.++..... +. ..+..++. .+....
T Consensus 11 ~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (235)
T 2w0m_A 11 DFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRD-GDPCIYVTTEESRDSIIRQAKQFNWDFEEYIEKKLIIID 89 (235)
T ss_dssp HHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHH-TCCEEEEESSSCHHHHHHHHHHTTCCCGGGBTTTEEEEE
T ss_pred HHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHC-CCeEEEEEcccCHHHHHHHHHHhcchHHHHhhCCEEEEe
Confidence 3677665 68899999999999999999999999888765 566766643221 00 00000000 000000
Q ss_pred ----------hccCCCcchhHHHHHHHHHhhCCc--EEEEcCCCCHH--HH-------HHHHHHH-hcCCeEEEEEcCc-
Q 019702 179 ----------RMQVPEPSLQHKVMIEAVENHMPE--VIIVDEIGTEA--EA-------HACRSIA-ERGVMLIGTAHGE- 235 (337)
Q Consensus 179 ----------~~~~~S~g~k~r~~ia~al~~~P~--vlilDEp~~~l--d~-------~~l~~~~-~~G~tvi~t~H~~- 235 (337)
.....|.++.++...+.+...+|+ +|++|||++.+ |. +.+..++ +.|.+||+++|+.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~ 169 (235)
T 2w0m_A 90 ALMKEKEDQWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAI 169 (235)
T ss_dssp CCC----CTTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC---
T ss_pred ccccccCceeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCc
Confidence 001225666677777777778999 99999999765 42 3455554 4599999999998
Q ss_pred -------chhHHhhchHHHHHhcC
Q 019702 236 -------WLENIIKNPILSDLIGG 252 (337)
Q Consensus 236 -------~~~~~~~d~v~~~ll~~ 252 (337)
..+..+||+++ +++.
T Consensus 170 ~~~~~~~~~~~~~~d~vi--~l~~ 191 (235)
T 2w0m_A 170 TTSQAFGFGVEHVADGII--RFRR 191 (235)
T ss_dssp --------CHHHHCSEEE--EEEE
T ss_pred ccccccccchheeeeEEE--EEEE
Confidence 44777888888 6654
No 89
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.55 E-value=3.3e-17 Score=144.79 Aligned_cols=54 Identities=9% Similarity=-0.189 Sum_probs=41.5
Q ss_pred HHhhCCcEEEEcCCCCHH----HH-------HHHHHHH-hcCCeEEEEEcCcchhHHhhchHHHHHhc
Q 019702 196 VENHMPEVIIVDEIGTEA----EA-------HACRSIA-ERGVMLIGTAHGEWLENIIKNPILSDLIG 251 (337)
Q Consensus 196 al~~~P~vlilDEp~~~l----d~-------~~l~~~~-~~G~tvi~t~H~~~~~~~~~d~v~~~ll~ 251 (337)
+++++|+++++|||++++ |. +.+.++. +.|.|+|++||+++++..+||+++ +|.
T Consensus 137 ~l~~~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~--~l~ 202 (207)
T 1znw_A 137 VFLAPPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLL--VGT 202 (207)
T ss_dssp EEEECSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHHHHHHHHH--C--
T ss_pred EEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHHHHHHHHHHHH--Hhc
Confidence 456788999999998875 32 3345555 458999999999999999999999 663
No 90
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.53 E-value=3.6e-15 Score=157.71 Aligned_cols=127 Identities=13% Similarity=0.095 Sum_probs=83.3
Q ss_pred chhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHcccc--------ccCCCeEEEEcCCcccccCCCCcccccccchhccC
Q 019702 111 HIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLS--------DEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQV 182 (337)
Q Consensus 111 ~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~--------~~~~~~i~~v~~~~ei~~~~~~~~~~~~~~~~~~~ 182 (337)
.++++++.+++|++++|+||||||||||||.++++.- |.....+.+++ .+....+.... + ......
T Consensus 662 V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~~vpa~~~~i~~~d---~i~~~ig~~d~-l--~~~~st 735 (918)
T 3thx_B 662 VPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMAQIGSYVPAEEATIGIVD---GIFTRMGAADN-I--YKGRST 735 (918)
T ss_dssp CCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHHHHTCCBSSSEEEEECCS---EEEEEC-------------CC
T ss_pred ecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHhhcCccccchhhhhhHHH---HHHHhCChHHH-H--HHhHHH
Confidence 4778999999999999999999999999999986532 11111111110 11000000000 0 112334
Q ss_pred CCcchhHHHHHHHHHhhCCcEEEEcCCCCHHHHH--------HHHHHHh-cCCeEEEEEcCcchhHHhhchH
Q 019702 183 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAH--------ACRSIAE-RGVMLIGTAHGEWLENIIKNPI 245 (337)
Q Consensus 183 ~S~g~k~r~~ia~al~~~P~vlilDEp~~~ld~~--------~l~~~~~-~G~tvi~t~H~~~~~~~~~d~v 245 (337)
+|+++++++.++++ +.+|++||||||++++|.. .+..+.+ .|.++|++||+.+++. ++++.
T Consensus 736 fs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~~-l~~~~ 805 (918)
T 3thx_B 736 FMEELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCE-LEKNY 805 (918)
T ss_dssp HHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGG-HHHHT
T ss_pred hhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHHH-HHhhc
Confidence 57788888888877 8999999999999999842 2344444 5999999999998663 55543
No 91
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.52 E-value=1.3e-14 Score=137.92 Aligned_cols=68 Identities=12% Similarity=0.066 Sum_probs=54.3
Q ss_pred cCCCcchhH------HHHHHHHHhhCCcEEEEcCCCCHHHHH-------HHHHHHhcCCeEEEEEcCcchhHHhhchHHH
Q 019702 181 QVPEPSLQH------KVMIEAVENHMPEVIIVDEIGTEAEAH-------ACRSIAERGVMLIGTAHGEWLENIIKNPILS 247 (337)
Q Consensus 181 ~~~S~g~k~------r~~ia~al~~~P~vlilDEp~~~ld~~-------~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~ 247 (337)
..+|+||+| ++++|+++..+|++|++||||+++|.. .+..+.+.|.+||++||+.+. ...||+++
T Consensus 247 ~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~~-~~~~d~~~- 324 (339)
T 3qkt_A 247 TFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEEL-KDAADHVI- 324 (339)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGGG-GGGCSEEE-
T ss_pred HHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHHH-HHhCCEEE-
Confidence 457999999 567778888899999999999999953 344445668899999999764 56899988
Q ss_pred HHhc
Q 019702 248 DLIG 251 (337)
Q Consensus 248 ~ll~ 251 (337)
.+.
T Consensus 325 -~l~ 327 (339)
T 3qkt_A 325 -RIS 327 (339)
T ss_dssp -EEE
T ss_pred -EEE
Confidence 553
No 92
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.50 E-value=1.4e-15 Score=145.09 Aligned_cols=152 Identities=15% Similarity=0.114 Sum_probs=103.6
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEcCC-ccccc----------
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTS-NEIGG---------- 165 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~~~-~ei~~---------- 165 (337)
++++++.|.... .+++++ +.+.+|+.++|+||||||||||+++|+|+..|+. +.+.++.++ .++..
T Consensus 48 ~~~l~~~~~tg~-~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~-g~i~~~G~~~~ev~~~i~~~~~~~~ 124 (347)
T 2obl_A 48 RQVIDQPFILGV-RAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADI-IVLALIGERGREVNEFLALLPQSTL 124 (347)
T ss_dssp CCCCCSEECCSC-HHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSE-EEEEEESCCHHHHHHHHTTSCHHHH
T ss_pred ecccceecCCCC-EEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCE-EEEEEecccHHHHHHHHHhhhhhhh
Confidence 447888886322 248999 9999999999999999999999999999998863 344444432 11100
Q ss_pred ------C--CCCcc-ccc-------ccc--------------hhccCCCcchhHHHHHHHHHhhCCcEEEEcCCCCHHHH
Q 019702 166 ------D--GDIPH-SAI-------GTA--------------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEA 215 (337)
Q Consensus 166 ------~--~~~~~-~~~-------~~~--------------~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~~ld~ 215 (337)
. ...+. ..+ ... .....+|+|+ |++++| +.+|++ |+++|.
T Consensus 125 ~~~v~~~~~~~~~~~~r~~~~~~~~~~ae~~~~~~~~vl~~ld~~~~lS~g~-r~v~la---l~~p~~------t~Gldp 194 (347)
T 2obl_A 125 SKCVLVVTTSDRPALERMKAAFTATTIAEYFRDQGKNVLLMMDSVTRYARAA-RDVGLA---SGEPDV------RGGFPP 194 (347)
T ss_dssp TTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHHHHHHHH-HHHHHH---TTCCCC------BTTBCH
T ss_pred hceEEEEECCCCCHHHHHHHHHHHHHHHHHHHhccccHHHHHhhHHHHHHHH-HHHHHH---cCCCCc------ccCCCH
Confidence 0 00000 000 000 1112247888 788888 577776 889886
Q ss_pred HHHH-------HHH--hcCC-----eEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHH
Q 019702 216 HACR-------SIA--ERGV-----MLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARA 265 (337)
Q Consensus 216 ~~l~-------~~~--~~G~-----tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~ 265 (337)
.... ++. +.|. ||++++|+++ +.+||+++ .+.+|+++..++++++.
T Consensus 195 ~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~--~~i~d~v~--~i~dG~Ivl~~~l~~~~ 254 (347)
T 2obl_A 195 SVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN--DPIGDEVR--SILDGHIVLTRELAEEN 254 (347)
T ss_dssp HHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC--CHHHHHHH--HHCSEEEEBCHHHHTTT
T ss_pred HHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC--ChhhhheE--EeeCcEEEEeCCHHHcC
Confidence 4432 333 2376 8999999998 67999999 99999999998887653
No 93
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.50 E-value=1.4e-14 Score=150.91 Aligned_cols=122 Identities=15% Similarity=0.120 Sum_probs=81.3
Q ss_pred chhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHcccc-ccCCCeEEEEcCC-cccccCCCCcccccccch-hccCCCcch
Q 019702 111 HIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLS-DEFQKRVVIVDTS-NEIGGDGDIPHSAIGTAR-RMQVPEPSL 187 (337)
Q Consensus 111 ~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~-~~~~~~i~~v~~~-~ei~~~~~~~~~~~~~~~-~~~~~S~g~ 187 (337)
.++++++. |++++|+||||||||||||.++|+.. ++.+. + ++.. ..++....+.. .++... ...-+|.++
T Consensus 568 vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~-~--vpa~~~~i~~v~~i~~-~~~~~d~l~~g~S~~~ 640 (765)
T 1ewq_A 568 VPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGS-F--VPAEEAHLPLFDGIYT-RIGASDDLAGGKSTFM 640 (765)
T ss_dssp CCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTC-C--BSSSEEEECCCSEEEE-ECCC------CCSHHH
T ss_pred EeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCc-e--eehhccceeeHHHhhc-cCCHHHHHHhcccHHH
Confidence 36677766 99999999999999999999999874 44322 1 1111 11111100000 001000 112247788
Q ss_pred hHHHHHHHHH--hhCCcEEEEcCC---CCHHHHHH-----HHHHHhcCCeEEEEEcCcchhH
Q 019702 188 QHKVMIEAVE--NHMPEVIIVDEI---GTEAEAHA-----CRSIAERGVMLIGTAHGEWLEN 239 (337)
Q Consensus 188 k~r~~ia~al--~~~P~vlilDEp---~~~ld~~~-----l~~~~~~G~tvi~t~H~~~~~~ 239 (337)
++++.+++++ +.+|+++|+||| |+++|... +..+.+.|.++|++||+.++..
T Consensus 641 ~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~~g~~vl~~TH~~~l~~ 702 (765)
T 1ewq_A 641 VEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFELTA 702 (765)
T ss_dssp HHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHHHHT
T ss_pred HHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 9999999999 889999999999 89999432 3344557999999999987654
No 94
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.49 E-value=1.5e-15 Score=149.20 Aligned_cols=153 Identities=10% Similarity=0.050 Sum_probs=103.9
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEcCCc-cccc----------
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSN-EIGG---------- 165 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~~~~-ei~~---------- 165 (337)
++++++.|... ..+++++ +.+.+|+.++|+||||||||||+++|+|+..++. +.+.+..++. ++..
T Consensus 134 ~~~v~~~~~tg-~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~-G~i~~~G~r~~ev~~~~~~~~~~~~ 210 (438)
T 2dpy_A 134 RTPIEHVLDTG-VRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADV-IVVGLIGERGREVKDFIENILGPDG 210 (438)
T ss_dssp SCCCCSBCCCS-CHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSE-EEEEEESCCHHHHHHHHHTTTHHHH
T ss_pred EeccceecCCC-ceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCe-EEEEEeceecHHHHHHHHhhccccc
Confidence 44788888632 1248999 9999999999999999999999999999998863 3444443310 1100
Q ss_pred ----CCCCccc--------cc-------------------ccchhccCCCcchhHHHHHHHHHhhCCcEEEEcCCCCHHH
Q 019702 166 ----DGDIPHS--------AI-------------------GTARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAE 214 (337)
Q Consensus 166 ----~~~~~~~--------~~-------------------~~~~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~~ld 214 (337)
...+++. .. ........+|+|+ ||+++| +.+|++ ++++|
T Consensus 211 l~r~i~~v~q~~~~~~~~~~v~~~~~~~ae~~~~~~~~v~~~ld~l~~lS~g~-qrvslA---l~~p~~------t~glD 280 (438)
T 2dpy_A 211 RARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQ-REIALA---IGEPPA------TKGYP 280 (438)
T ss_dssp HHTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECHHHHHHHH-HHHHHH---TTCCCC------SSSCC
T ss_pred cCceEEEEECCCCCHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhHHHHHHHH-HHHHHH---hCCCcc------cccCC
Confidence 0000000 00 0001112247888 899888 788877 88888
Q ss_pred HH-------HHHHHHh---c-CC-----eEEEEEcCcchhHHhhchHHHHHhcCceEEEecCHHHHHH
Q 019702 215 AH-------ACRSIAE---R-GV-----MLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARAR 266 (337)
Q Consensus 215 ~~-------~l~~~~~---~-G~-----tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~~~ 266 (337)
.. .+.++.+ . |. ||++++|+++ ..+||+++ .+.+|+++..++++++..
T Consensus 281 ~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~--~~iad~v~--~l~dG~Ivl~~~~~~~~~ 344 (438)
T 2dpy_A 281 PSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ--DPIADSAR--AILDGHIVLSRRLAEAGH 344 (438)
T ss_dssp TTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC--CHHHHHHH--HHSSEEEEECHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc--chhhceEE--EEeCcEEEEeCCHHHccC
Confidence 42 2333333 2 64 8999999999 57999999 999999999999887654
No 95
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.47 E-value=7e-16 Score=145.23 Aligned_cols=127 Identities=14% Similarity=0.020 Sum_probs=82.9
Q ss_pred ccCCCEEEEEcCCCCcHHHHHHHHHccccccCC-CeEEEEcCCccccc---------C--CCCcccc----c-------c
Q 019702 119 LHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ-KRVVIVDTSNEIGG---------D--GDIPHSA----I-------G 175 (337)
Q Consensus 119 v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~-~~i~~v~~~~ei~~---------~--~~~~~~~----~-------~ 175 (337)
+++|++++|+||||||||||+++|+|++.|..+ .++.++.+...+.. . .+.+... + +
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd~~~~~~t~~e~~~~~~~~g~~~~~d~~~~~~~L~~l~ 166 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDGFLYPNAELQRRNLMHRKGFPESYNRRALMRFVTSVK 166 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGGGGBCCHHHHHHTTCTTCTTSGGGBCHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhccccCCCCeEEEEecCccCCcccHHHHHHHHHhcCCChHHHHHHHHHHHHHhC
Confidence 678999999999999999999999999988633 46777765432211 0 0112110 0 0
Q ss_pred --c-chhccCCCcchhHHHHHHHHHhhCCcEEEEcCCCCHHHHHHHHHHHhcCCeEEEEEcCcchh-HHhhchHH
Q 019702 176 --T-ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRSIAERGVMLIGTAHGEWLE-NIIKNPIL 246 (337)
Q Consensus 176 --~-~~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~~ld~~~l~~~~~~G~tvi~t~H~~~~~-~~~~d~v~ 246 (337)
. ......+|+|++||+++|++++.+|+|||+|||+..+|... ..+.+.=-..|+++|+.+.. ..+.+|.+
T Consensus 167 ~~~~~~~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~-~~l~~~~D~~I~V~a~~~~~~~R~i~R~~ 240 (312)
T 3aez_A 167 SGSDYACAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPT-LMVSDLFDFSLYVDARIEDIEQWYVSRFL 240 (312)
T ss_dssp TTCSCEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSS-CCGGGGCSEEEEEEECHHHHHHHHHHHHH
T ss_pred CCcccCCcccCChhhhhhhhhHHHhccCCCEEEECCccccCCcch-HHHHHhcCcEEEEECCHHHHHHHHHHHHH
Confidence 0 02234579999999999999999999999999999875210 01222212346666666533 33445544
No 96
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.46 E-value=6.2e-14 Score=140.75 Aligned_cols=140 Identities=13% Similarity=0.086 Sum_probs=89.9
Q ss_pred cchhhhhh-cccCCCEEEEEcCCCCcHHHHHHH--HHccccccCCCeEEEEcCCccc-----c-cCCCCcccc-----cc
Q 019702 110 GHIDMVYD-LLHYGKSILFVGRPGVGKTTVMRE--IARVLSDEFQKRVVIVDTSNEI-----G-GDGDIPHSA-----IG 175 (337)
Q Consensus 110 ~~~~~l~~-~v~~g~~v~IiGpnGsGKTTLL~~--l~gll~~~~~~~i~~v~~~~ei-----~-~~~~~~~~~-----~~ 175 (337)
..++++++ .+++|++++|+||||||||||++. ++|+++|+ .+.+.+-.+.... . ..+.+++.. +.
T Consensus 26 ~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~-~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~~~~l~ 104 (525)
T 1tf7_A 26 EGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFD-EPGVFVTFEETPQDIIKNARSFGWDLAKLVDEGKLF 104 (525)
T ss_dssp TTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHC-CCEEEEESSSCHHHHHHHHGGGTCCHHHHHHTTSEE
T ss_pred hhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCC-CCEEEEEEeCCHHHHHHHHHHcCCChHHhhccCcEE
Confidence 35999999 999999999999999999999999 78999875 3444433222110 0 001111110 00
Q ss_pred cch------hccCCCc-c-hhHHHHHHHHHh-hCCcEEEEcCCCCH-----HHH-------HHHHHHHhcCCeEEEEEcC
Q 019702 176 TAR------RMQVPEP-S-LQHKVMIEAVEN-HMPEVIIVDEIGTE-----AEA-------HACRSIAERGVMLIGTAHG 234 (337)
Q Consensus 176 ~~~------~~~~~S~-g-~k~r~~ia~al~-~~P~vlilDEp~~~-----ld~-------~~l~~~~~~G~tvi~t~H~ 234 (337)
... ....++. + ..+...+...+. .+|+++++|||++. +|. +.+..+++.|+|||+++|+
T Consensus 105 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~g~~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~ 184 (525)
T 1tf7_A 105 ILDASPDPEGQEVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTER 184 (525)
T ss_dssp EEECCCCSSCCSCCSSHHHHHHHHHHHHHHHHHTCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEEC
T ss_pred EEecCcccchhhhhcccCHHHHHHHHHHHHHHcCCCEEEECCHHHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecC
Confidence 000 0011110 1 112233445554 79999999999874 342 3455666779999999999
Q ss_pred cchh---------HHhhchHHHHHhcC
Q 019702 235 EWLE---------NIIKNPILSDLIGG 252 (337)
Q Consensus 235 ~~~~---------~~~~d~v~~~ll~~ 252 (337)
++.+ +.+||+++ +|++
T Consensus 185 ~~~~~~~~~~~i~~~laD~vi--~L~~ 209 (525)
T 1tf7_A 185 IEEYGPIARYGVEEFVSDNVV--ILRN 209 (525)
T ss_dssp SSSSSCSSTTSCHHHHCSEEE--EEEE
T ss_pred CCCccccccccceeeeeeEEE--EEEE
Confidence 9874 56699999 8876
No 97
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.45 E-value=3.6e-14 Score=148.64 Aligned_cols=141 Identities=15% Similarity=0.108 Sum_probs=84.9
Q ss_pred chhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEcCC-cccccCCC-Cccccccc--chhccCCCcc
Q 019702 111 HIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTS-NEIGGDGD-IPHSAIGT--ARRMQVPEPS 186 (337)
Q Consensus 111 ~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~~~-~ei~~~~~-~~~~~~~~--~~~~~~~S~g 186 (337)
.++++++. ++|++++|+||||||||||||+|+|+......+. +++.. ..++.... ++...... .......+.+
T Consensus 597 vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~--~vpa~~~~i~~~~~i~~~~~~~d~l~~~~stf~~e 673 (800)
T 1wb9_A 597 IANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGS--YVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVE 673 (800)
T ss_dssp CCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTC--CBSSSEEEECCCCEEEEEEC-----------CHHH
T ss_pred eeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcCc--ccchhcccceeHHHHHhhCCHHHHHHhhhhhhhHH
Confidence 37788888 8899999999999999999999999853321110 11111 11111000 00000000 0011123344
Q ss_pred hhHHHHHHHHHhhCCcEEEEcCCCCHHH---H-----HHHHHHHh-cCCeEEEEEcCcchhHHhhchHHHHHhcCceEEE
Q 019702 187 LQHKVMIEAVENHMPEVIIVDEIGTEAE---A-----HACRSIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVT 257 (337)
Q Consensus 187 ~k~r~~ia~al~~~P~vlilDEp~~~ld---~-----~~l~~~~~-~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~ 257 (337)
++ +++.+...+.+|+++|+|||+++.| . ..+..+.+ .|.++|++||+.++.. +|++.. .+.++++..
T Consensus 674 ~~-~~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~el~~-l~d~~~--~v~n~~~~~ 749 (800)
T 1wb9_A 674 MT-ETANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQ-LPEKME--GVANVHLDA 749 (800)
T ss_dssp HH-HHHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGG-HHHHST--TEEEEEEEE
T ss_pred HH-HHHHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCHHHHH-Hhhhhh--ceEEEEEEE
Confidence 43 3444445578999999999966554 2 33455666 4999999999998764 788776 566676654
Q ss_pred e
Q 019702 258 L 258 (337)
Q Consensus 258 ~ 258 (337)
.
T Consensus 750 ~ 750 (800)
T 1wb9_A 750 L 750 (800)
T ss_dssp E
T ss_pred E
Confidence 4
No 98
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.44 E-value=1.7e-15 Score=135.22 Aligned_cols=132 Identities=11% Similarity=-0.025 Sum_probs=79.2
Q ss_pred chhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEE-------------------EcCCcccc-------
Q 019702 111 HIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVI-------------------VDTSNEIG------- 164 (337)
Q Consensus 111 ~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~-------------------v~~~~ei~------- 164 (337)
.++++++.+++|++++|+||||||||||+++|+|++ | +.+.+ +++.....
T Consensus 12 ~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p---G~i~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 87 (218)
T 1z6g_A 12 SGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P---NYFYFSVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKNE 87 (218)
T ss_dssp ----------CCCCEEEECSTTSSHHHHHHHHHHHS-T---TTEEECCCEECSCCCSSCCBTTTBEECCHHHHHHHHHTT
T ss_pred cccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C---CcEEEeecccCCCCCcccccCCeEEECCHHHHHHhhhcc
Confidence 388999999999999999999999999999999998 4 22322 11110000
Q ss_pred ---cCCCCccccccc--------chhc------cCCCcchhHHHHH-----HHHHhhCCcEEEEcCCCCHHHH-------
Q 019702 165 ---GDGDIPHSAIGT--------ARRM------QVPEPSLQHKVMI-----EAVENHMPEVIIVDEIGTEAEA------- 215 (337)
Q Consensus 165 ---~~~~~~~~~~~~--------~~~~------~~~S~g~k~r~~i-----a~al~~~P~vlilDEp~~~ld~------- 215 (337)
....+..+..+. .... ..+|+|++||+++ ++++...|++++||||++++|.
T Consensus 88 ~~l~~~~~~~~~~g~~~~~i~~~l~~~~~~il~~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~~~~~~i~ 167 (218)
T 1z6g_A 88 DFLEYDNYANNFYGTLKSEYDKAKEQNKICLFEMNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNTENQEQIQ 167 (218)
T ss_dssp CEEEEEEETTEEEEEEHHHHHHHHHTTCEEEEEECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTCCCCHHHHH
T ss_pred chhhhhhcccccCCCcHHHHHHHHhCCCcEEEEecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcCCCCHHHHH
Confidence 000000000000 0000 1238999999999 7888899999999999988772
Q ss_pred HHHHHHHh-------cCCeEEEEEcCcchhHHhhchHH
Q 019702 216 HACRSIAE-------RGVMLIGTAHGEWLENIIKNPIL 246 (337)
Q Consensus 216 ~~l~~~~~-------~G~tvi~t~H~~~~~~~~~d~v~ 246 (337)
+.+..+.+ .....|+++|+.+.+....++++
T Consensus 168 ~~l~~~~~~~~~~h~~~~d~iiv~~~~~ea~~~~~~ii 205 (218)
T 1z6g_A 168 KRMEQLNIELHEANLLNFNLSIINDDLTLTYQQLKNYL 205 (218)
T ss_dssp HHHHHHHHHHHHHTTSCCSEEEECSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccCCCEEEECCCHHHHHHHHHHHH
Confidence 22322211 45678889999888877787777
No 99
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.42 E-value=1.9e-14 Score=132.70 Aligned_cols=109 Identities=14% Similarity=0.161 Sum_probs=69.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHccccccCC---------------CeEEEEcCCcccccC----------CCCcccc----c
Q 019702 124 SILFVGRPGVGKTTVMREIARVLSDEFQ---------------KRVVIVDTSNEIGGD----------GDIPHSA----I 174 (337)
Q Consensus 124 ~v~IiGpnGsGKTTLL~~l~gll~~~~~---------------~~i~~v~~~~ei~~~----------~~~~~~~----~ 174 (337)
.++|+||||||||||+++|+|+..|+.+ ..+.++.+...+... ....... +
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~~i 83 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWEPI 83 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHHHH
Confidence 4799999999999999999999987632 223333332211000 0000000 0
Q ss_pred cc-------chhccCCCcchhHHHHHHHHHhhCCcEEEEcCCCCH---HHHHHHHHHHhcCCeEEEEEcCcc
Q 019702 175 GT-------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTE---AEAHACRSIAERGVMLIGTAHGEW 236 (337)
Q Consensus 175 ~~-------~~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~~---ld~~~l~~~~~~G~tvi~t~H~~~ 236 (337)
.. ......+|+|++||+++|+|++. ++++|||+.+ +|.+.+..+.+. +++|++.|..+
T Consensus 84 ~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD~~~l~~L~~~-~~vI~Vi~K~D 151 (270)
T 3sop_A 84 EKYINEQYEKFLKEEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLDLEFMKHLSKV-VNIIPVIAKAD 151 (270)
T ss_dssp HHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHHHHHHHHHHTT-SEEEEEETTGG
T ss_pred HHHHHHHHHhhhHHhcCcccchhhhhheeeee---eEEEecCCCcCCHHHHHHHHHHHhc-CcEEEEEeccc
Confidence 00 01234579999999999998775 9999999765 456777777776 88998888765
No 100
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.42 E-value=2.3e-13 Score=119.87 Aligned_cols=134 Identities=16% Similarity=0.098 Sum_probs=84.2
Q ss_pred hhhhhh-cccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEcCCccccc--------CCCCcccccccchhccC
Q 019702 112 IDMVYD-LLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGG--------DGDIPHSAIGTARRMQV 182 (337)
Q Consensus 112 ~~~l~~-~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~~~~ei~~--------~~~~~~~~~~~~~~~~~ 182 (337)
++.+.. -+++|++++|+||||||||||++.+++ .+ +..+.+++....+.. ...+....+........
T Consensus 9 LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~--~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (220)
T 2cvh_A 9 LDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LS--GKKVAYVDTEGGFSPERLVQMAETRGLNPEEALSRFILFT 84 (220)
T ss_dssp HHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HH--CSEEEEEESSCCCCHHHHHHHHHTTTCCHHHHHHHEEEEC
T ss_pred HHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--Hc--CCcEEEEECCCCCCHHHHHHHHHhcCCChHHHhhcEEEEe
Confidence 555554 588999999999999999999999999 33 567887765431110 00000000000001112
Q ss_pred CCcch--hHHHHHHHHHhhC-CcEEEEcCCCCHHHH---------------HHHHHHH-hcCCeEEEEEcCcc-------
Q 019702 183 PEPSL--QHKVMIEAVENHM-PEVIIVDEIGTEAEA---------------HACRSIA-ERGVMLIGTAHGEW------- 236 (337)
Q Consensus 183 ~S~g~--k~r~~ia~al~~~-P~vlilDEp~~~ld~---------------~~l~~~~-~~G~tvi~t~H~~~------- 236 (337)
.+.++ ++++..++++..+ |++||+|||++.+|. ..+..++ +.|.++|+++|...
T Consensus 85 ~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~ 164 (220)
T 2cvh_A 85 PSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMT 164 (220)
T ss_dssp CTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSC
T ss_pred cCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCcc
Confidence 34443 4456667777775 999999999987642 1244444 45999999999876
Q ss_pred ------hhHHhhchHHHHHhc
Q 019702 237 ------LENIIKNPILSDLIG 251 (337)
Q Consensus 237 ------~~~~~~d~v~~~ll~ 251 (337)
.+...||.++ +++
T Consensus 165 ~p~~~~~~~~~~d~vi--~l~ 183 (220)
T 2cvh_A 165 KPVAEQTLGYRCKDIL--RLD 183 (220)
T ss_dssp CSCCCHHHHHTSSEEE--EEE
T ss_pred ccCCCcceeecCcEEE--EEE
Confidence 3455677766 554
No 101
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.41 E-value=3.2e-13 Score=128.94 Aligned_cols=128 Identities=14% Similarity=0.109 Sum_probs=81.9
Q ss_pred hhhh-hhcccCCCEEEEEcCCCCcHHHHHHHHHccc--cccC---CCeEEEEcCCccc-----cc---CCCCccccccc-
Q 019702 112 IDMV-YDLLHYGKSILFVGRPGVGKTTVMREIARVL--SDEF---QKRVVIVDTSNEI-----GG---DGDIPHSAIGT- 176 (337)
Q Consensus 112 ~~~l-~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll--~~~~---~~~i~~v~~~~ei-----~~---~~~~~~~~~~~- 176 (337)
++.+ ..-+++|++++|+||||||||||++.+++.. +|+. ++.+++++....+ .. ...+....+..
T Consensus 120 LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i~~i~q~~~~~~~~v~~n 199 (349)
T 1pzn_A 120 LDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVLKH 199 (349)
T ss_dssp HHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHHHHHHHTTTCCHHHHGGG
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHHHHHHHHcCCCHHHHhhC
Confidence 4443 5678999999999999999999999999998 5554 3576777653321 00 00111000000
Q ss_pred chhc-cCCCcchhHHHHHHHHHh-------hCCcEEEEcCCCCHHHHH-------------------HHHHHH-hcCCeE
Q 019702 177 ARRM-QVPEPSLQHKVMIEAVEN-------HMPEVIIVDEIGTEAEAH-------------------ACRSIA-ERGVML 228 (337)
Q Consensus 177 ~~~~-~~~S~g~k~r~~ia~al~-------~~P~vlilDEp~~~ld~~-------------------~l~~~~-~~G~tv 228 (337)
.... ...+.++.+++.++.++. .+|++||+|||++.+|.+ .+..++ +.|.+|
T Consensus 200 i~~~~~~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tv 279 (349)
T 1pzn_A 200 IYVARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAV 279 (349)
T ss_dssp EEEEECCSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEE
T ss_pred EEEEecCChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEE
Confidence 0000 112456777888888887 689999999999988753 122333 358999
Q ss_pred EEEEcCcchhH
Q 019702 229 IGTAHGEWLEN 239 (337)
Q Consensus 229 i~t~H~~~~~~ 239 (337)
|+|+|......
T Consensus 280 ii~~h~~~~~~ 290 (349)
T 1pzn_A 280 FVTNQVQARPD 290 (349)
T ss_dssp EEEEECC----
T ss_pred EEEcccccccc
Confidence 99999876444
No 102
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.40 E-value=2e-14 Score=125.75 Aligned_cols=131 Identities=18% Similarity=0.204 Sum_probs=76.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHccccccCC---------------CeEEEEcCCc--cccc--CCCC-cc-----ccccc
Q 019702 122 GKSILFVGRPGVGKTTVMREIARVLSDEFQ---------------KRVVIVDTSN--EIGG--DGDI-PH-----SAIGT 176 (337)
Q Consensus 122 g~~v~IiGpnGsGKTTLL~~l~gll~~~~~---------------~~i~~v~~~~--ei~~--~~~~-~~-----~~~~~ 176 (337)
|+.++|+||||||||||++.|+|+++ +.+ .++.++.+.. .... .... +. ..++
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~Gi~~~g~~~~~~~~~~~~ig~~~~~~~g~~~~l~~~~~~~~~~~~~~~v~- 78 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPLSRVGLEPPPGKRECRVG- 78 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTTCCCEEEECCEEETTSSEEEEEEEETTSCEEEEEECCCCCCSSSCCEESS-
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCCEEEcCEecchhHhhhceEEEEEEecccceehhhcccccCCccccccccc-
Confidence 67899999999999999999999986 432 1111111100 0000 0000 00 0000
Q ss_pred chhccCCCcchhHHH-HHHH---HHhhCCcEEEEcC--CCCHHH---HHHHHHHHhcCCeEEE----EEcCcchhHHhhc
Q 019702 177 ARRMQVPEPSLQHKV-MIEA---VENHMPEVIIVDE--IGTEAE---AHACRSIAERGVMLIG----TAHGEWLENIIKN 243 (337)
Q Consensus 177 ~~~~~~~S~g~k~r~-~ia~---al~~~P~vlilDE--p~~~ld---~~~l~~~~~~G~tvi~----t~H~~~~~~~~~d 243 (337)
.....+|+++++++ ++++ |+..+|++||+|| |+...| .+.+.++.+...++|+ ++|+.+ ..+.+
T Consensus 79 -~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~~~~~ilgti~vsh~~~--~~~vd 155 (189)
T 2i3b_A 79 -QYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLSTPGTIILGTIPVPKGKP--LALVE 155 (189)
T ss_dssp -SSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHHCSSCCEEEECCCCCSSC--CTTHH
T ss_pred -eEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHhCCCcEEEEEeecCCCCc--hHHHH
Confidence 00112456666554 3333 5688999999999 565444 4566666666555553 238875 24677
Q ss_pred hHHHHHhcCceEEEec
Q 019702 244 PILSDLIGGVDTVTLG 259 (337)
Q Consensus 244 ~v~~~ll~~G~iv~~g 259 (337)
++. .+.+|+++...
T Consensus 156 ~i~--~~~~~~i~~~~ 169 (189)
T 2i3b_A 156 EIR--NRKDVKVFNVT 169 (189)
T ss_dssp HHH--TTCCSEEEECC
T ss_pred HHe--ecCCcEEEEeC
Confidence 777 77889988753
No 103
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.38 E-value=2.7e-14 Score=129.31 Aligned_cols=142 Identities=16% Similarity=0.157 Sum_probs=82.0
Q ss_pred chhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHcccccc----CCCeEEEEcCCcccccC-----------C--CC--cc
Q 019702 111 HIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDE----FQKRVVIVDTSNEIGGD-----------G--DI--PH 171 (337)
Q Consensus 111 ~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~----~~~~i~~v~~~~ei~~~-----------~--~~--~~ 171 (337)
+++++++.+++|++++|+||||||||||+++|+|++... ....+.++++.. +... . .+ +.
T Consensus 14 ~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~lG~~~~~~~~~~i~~v~~d~-~~~~l~~~~~~~~~~~~~~~~~~~ 92 (245)
T 2jeo_A 14 GTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQDR-FYKVLTAEQKAKALKGQYNFDHPD 92 (245)
T ss_dssp ---------CCSEEEEEECSTTSSHHHHHHHHHHHHTGGGSCGGGCSEEEEEGGG-GBCCCCHHHHHHHHTTCCCTTSGG
T ss_pred eecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHhchhcccccCCceEEEeCCc-CccccCHhHhhhhhccCCCCCCcc
Confidence 489999999999999999999999999999999976321 124566666542 2110 0 00 10
Q ss_pred c--------cccc-----chhccCCCcchhHHHHHHHHHhhCCcEEEEcCCCCHHHHHHHHHHHhcCCeEEEEEcCcchh
Q 019702 172 S--------AIGT-----ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRSIAERGVMLIGTAHGEWLE 238 (337)
Q Consensus 172 ~--------~~~~-----~~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~~ld~~~l~~~~~~G~tvi~t~H~~~~~ 238 (337)
. .+.. ......+|+|+++|+.+ +++..+|+++|+|||....+... ..+ .+.+|++++|+..
T Consensus 93 ~~~~~~~~~~L~~l~~~~~~~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~l-~~~--~~~~i~v~th~~~-- 166 (245)
T 2jeo_A 93 AFDNDLMHRTLKNIVEGKTVEVPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQEI-RDM--FHLRLFVDTDSDV-- 166 (245)
T ss_dssp GBCHHHHHHHHHHHHTTCCEEECCEETTTTEECSS-CEEECCCSEEEEECTTTTTSHHH-HTT--CSEEEEEECCHHH--
T ss_pred cccHHHHHHHHHHHHCCCCeecccccccccCccCc-eEEecCCCEEEEeCccccccHHH-HHh--cCeEEEEECCHHH--
Confidence 0 0000 01233468899988876 47778999999999987655432 222 3789999999743
Q ss_pred HHhhchHHHHHhcCceEEEecCHHHHHH
Q 019702 239 NIIKNPILSDLIGGVDTVTLGDEEARAR 266 (337)
Q Consensus 239 ~~~~d~v~~~ll~~G~iv~~g~~~~~~~ 266 (337)
.+++++..++ .+|+ +++++..
T Consensus 167 -~~~r~~~r~~-~~G~-----~~e~~~~ 187 (245)
T 2jeo_A 167 -RLSRRVLRDV-RRGR-----DLEQILT 187 (245)
T ss_dssp -HHHHHHHHHT-C--------CHHHHHH
T ss_pred -HHHHHHHHHH-HcCC-----CHHHHHH
Confidence 2334444323 5564 5666654
No 104
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.37 E-value=2.5e-13 Score=143.58 Aligned_cols=86 Identities=13% Similarity=0.130 Sum_probs=75.4
Q ss_pred hccCCCcchhHHHHHHHHHhhCCc--EEEEcCCCCHHHH-------HHHHHHHhcCCeEEEEEcCcchhHHhhchHHHHH
Q 019702 179 RMQVPEPSLQHKVMIEAVENHMPE--VIIVDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDL 249 (337)
Q Consensus 179 ~~~~~S~g~k~r~~ia~al~~~P~--vlilDEp~~~ld~-------~~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~l 249 (337)
....+||||+||++||+||.++|+ +|||||||++||. +.+.++++.|.|||+++|+++++. .||+++ .
T Consensus 461 ~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivVtHd~~~~~-~aD~ii--~ 537 (916)
T 3pih_A 461 SATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEHDEEVIR-NADHII--D 537 (916)
T ss_dssp BGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEECCCHHHHH-TCSEEE--E
T ss_pred CcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH-hCCEEE--E
Confidence 345689999999999999999887 9999999999983 456666677999999999999875 599999 8
Q ss_pred h------cCceEEEecCHHHHHHh
Q 019702 250 I------GGVDTVTLGDEEARARR 267 (337)
Q Consensus 250 l------~~G~iv~~g~~~~~~~~ 267 (337)
| ++|++++.|++++++..
T Consensus 538 lgpgag~~~G~iv~~G~~~e~~~~ 561 (916)
T 3pih_A 538 IGPGGGTNGGRVVFQGTVDELLKN 561 (916)
T ss_dssp EESSSGGGCSEEEEEECHHHHHHS
T ss_pred EcCCcccCCCEEEEeechhhhhcC
Confidence 8 89999999999998864
No 105
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.35 E-value=4.4e-13 Score=115.21 Aligned_cols=104 Identities=19% Similarity=0.178 Sum_probs=64.5
Q ss_pred cccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEcCCcccccCCCCcccccccchhccCCCcchhHHHHHHHHH
Q 019702 118 LLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVE 197 (337)
Q Consensus 118 ~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~~~~ei~~~~~~~~~~~~~~~~~~~~S~g~k~r~~ia~al 197 (337)
.+.+|+.++|+||||||||||++++++.+.+..+..+.++... ++. . .+.. .. +.+... -....
T Consensus 34 ~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~-~~~------~-~~~~--~~---~~~~~~---~~~~~ 97 (180)
T 3ec2_A 34 NPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTK-DLI------F-RLKH--LM---DEGKDT---KFLKT 97 (180)
T ss_dssp CGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHH-HHH------H-HHHH--HH---HHTCCS---HHHHH
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHH-HHH------H-HHHH--Hh---cCchHH---HHHHH
Confidence 3567999999999999999999999999976544444443211 110 0 0000 00 001111 12223
Q ss_pred hhCCcEEEEcCCCC-HHHH-------HHHHHHHhcCCeEEEEEcCcch
Q 019702 198 NHMPEVIIVDEIGT-EAEA-------HACRSIAERGVMLIGTAHGEWL 237 (337)
Q Consensus 198 ~~~P~vlilDEp~~-~ld~-------~~l~~~~~~G~tvi~t~H~~~~ 237 (337)
..+|++|++|||++ ++|. +.+....+.|.++|+|||....
T Consensus 98 ~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~~ 145 (180)
T 3ec2_A 98 VLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSLQ 145 (180)
T ss_dssp HHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCSC
T ss_pred hcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCChh
Confidence 45899999999985 4442 2344445678999999997643
No 106
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.34 E-value=1.4e-12 Score=120.11 Aligned_cols=119 Identities=12% Similarity=0.127 Sum_probs=74.2
Q ss_pred cccCCCEEEEEcCCCCcHHHHHHHHHcccccc---------CCCeEEEEcCCccccc--------CCCCcc-------cc
Q 019702 118 LLHYGKSILFVGRPGVGKTTVMREIARVLSDE---------FQKRVVIVDTSNEIGG--------DGDIPH-------SA 173 (337)
Q Consensus 118 ~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~---------~~~~i~~v~~~~ei~~--------~~~~~~-------~~ 173 (337)
-+.+|++++|+||||||||||++.+++.+... .++.+.|+........ ...+.. ..
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~~~~~~~~r~~~~g~~~~~~~~~~~~~~ 105 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDPPTAIHHRLHALGAHLSAEERQAVADG 105 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSSCHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECCCCHHHHHHHHHHHHhhcChhhhhhccCc
Confidence 47899999999999999999999999977542 1345666543211100 000110 00
Q ss_pred cc--c--chhccCCCcchhHHHHHHHHHhhCCcEEEEcCCCC--HHHH----------HHHHHHH-hcCCeEEEEEcCcc
Q 019702 174 IG--T--ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGT--EAEA----------HACRSIA-ERGVMLIGTAHGEW 236 (337)
Q Consensus 174 ~~--~--~~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~--~ld~----------~~l~~~~-~~G~tvi~t~H~~~ 236 (337)
+. . ......+|+|+.++ +++++.+|++||+|||++ ++|. ..+..++ +.|+|||+++|+..
T Consensus 106 l~l~~~~~~~~~~ls~g~~~~---i~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~tvi~i~H~~~ 182 (279)
T 1nlf_A 106 LLIQPLIGSLPNIMAPEWFDG---LKRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHASK 182 (279)
T ss_dssp EEECCCTTSCCCTTSHHHHHH---HHHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC--
T ss_pred eEEeecCCCCcccCCHHHHHH---HHHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCCEEEEEecCCC
Confidence 00 0 01244567887654 357778999999999998 5441 3345554 56999999999987
Q ss_pred hhH
Q 019702 237 LEN 239 (337)
Q Consensus 237 ~~~ 239 (337)
...
T Consensus 183 ~~~ 185 (279)
T 1nlf_A 183 GAA 185 (279)
T ss_dssp ---
T ss_pred ccc
Confidence 553
No 107
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.33 E-value=1.8e-12 Score=108.96 Aligned_cols=84 Identities=15% Similarity=0.204 Sum_probs=61.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEcCCcccccCCCCcccccccchhccCCCcchhHHHHHHHHHhhC
Q 019702 121 YGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHM 200 (337)
Q Consensus 121 ~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~~~~ei~~~~~~~~~~~~~~~~~~~~S~g~k~r~~ia~al~~~ 200 (337)
+|+.++|+||||||||||++++++.+.+. +..+.+++... +. .. ++..+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~-g~~~~~~~~~~-~~------~~-----------------------~~~~~ 83 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEA-GKNAAYIDAAS-MP------LT-----------------------DAAFE 83 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTT-TCCEEEEETTT-SC------CC-----------------------GGGGG
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhc-CCcEEEEcHHH-hh------HH-----------------------HHHhC
Confidence 89999999999999999999999998764 44566554321 10 00 23568
Q ss_pred CcEEEEcCCCCHHH------HHHHHHHHhcCCe-EEEEEcCc
Q 019702 201 PEVIIVDEIGTEAE------AHACRSIAERGVM-LIGTAHGE 235 (337)
Q Consensus 201 P~vlilDEp~~~ld------~~~l~~~~~~G~t-vi~t~H~~ 235 (337)
|++|++|||++..+ .+.+..+.++|.+ +|+|+|..
T Consensus 84 ~~lLilDE~~~~~~~~~~~l~~li~~~~~~g~~~iiits~~~ 125 (149)
T 2kjq_A 84 AEYLAVDQVEKLGNEEQALLFSIFNRFRNSGKGFLLLGSEYT 125 (149)
T ss_dssp CSEEEEESTTCCCSHHHHHHHHHHHHHHHHTCCEEEEEESSC
T ss_pred CCEEEEeCccccChHHHHHHHHHHHHHHHcCCcEEEEECCCC
Confidence 99999999988322 2345555677887 88888853
No 108
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.33 E-value=7.1e-13 Score=111.38 Aligned_cols=69 Identities=10% Similarity=0.012 Sum_probs=57.4
Q ss_pred hccCCCcchhHHHHHH------HHHhhCCcEEEEcCCCCHHHHH-------HHHHHHhcCCeEEEEEcCcchhHHhhchH
Q 019702 179 RMQVPEPSLQHKVMIE------AVENHMPEVIIVDEIGTEAEAH-------ACRSIAERGVMLIGTAHGEWLENIIKNPI 245 (337)
Q Consensus 179 ~~~~~S~g~k~r~~ia------~al~~~P~vlilDEp~~~ld~~-------~l~~~~~~G~tvi~t~H~~~~~~~~~d~v 245 (337)
....+|+||+||+++| +|++.+|+++++||||+++|.. .+..+.+.|.+||++||+.+ ...+||++
T Consensus 54 ~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~-~~~~~d~i 132 (148)
T 1f2t_B 54 PLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE-LKDAADHV 132 (148)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCGG-GGGGCSEE
T ss_pred ChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChHH-HHHhCCEE
Confidence 4567899999999876 7899999999999999999953 34444456899999999995 55789999
Q ss_pred HHHHh
Q 019702 246 LSDLI 250 (337)
Q Consensus 246 ~~~ll 250 (337)
+ ++
T Consensus 133 i--~l 135 (148)
T 1f2t_B 133 I--RI 135 (148)
T ss_dssp E--EE
T ss_pred E--EE
Confidence 8 77
No 109
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.29 E-value=3.8e-12 Score=119.27 Aligned_cols=116 Identities=18% Similarity=0.208 Sum_probs=77.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEcCCcc----------------cccCCC----Ccccc----cc-
Q 019702 121 YGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNE----------------IGGDGD----IPHSA----IG- 175 (337)
Q Consensus 121 ~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~~~~e----------------i~~~~~----~~~~~----~~- 175 (337)
+|++++|+||||||||||++.|+|++.|+ +++|.+...... +++... .|... +.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~-~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~ 179 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNL-GKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQA 179 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTT-TCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc-CCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHH
Confidence 68999999999999999999999999987 667776643210 111000 01000 00
Q ss_pred -c--------chhccC-------CCcchhHHHHHHHHHhhCCc--EEEEcCCCCHHHHHHHHHHHhc-CCeEEEEEcCcc
Q 019702 176 -T--------ARRMQV-------PEPSLQHKVMIEAVENHMPE--VIIVDEIGTEAEAHACRSIAER-GVMLIGTAHGEW 236 (337)
Q Consensus 176 -~--------~~~~~~-------~S~g~k~r~~ia~al~~~P~--vlilDEp~~~ld~~~l~~~~~~-G~tvi~t~H~~~ 236 (337)
. ....+. .+...+||+++|+|+..+|+ ++.||..+.....+.+..+.+. |.|+|++||+..
T Consensus 180 ~~~~~~d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~~~~~~~~~~~~~~~~t~iivTh~d~ 259 (304)
T 1rj9_A 180 MKARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQAKKFHEAVGLTGVIVTKLDG 259 (304)
T ss_dssp HHHHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHHHHHHHHHHHHCCSEEEEECTTS
T ss_pred HHhCCCCEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHHHHHHHHHHHHHHcCCcEEEEECCcc
Confidence 0 000000 12344789999999999999 7889955555445667777654 999999999865
Q ss_pred h
Q 019702 237 L 237 (337)
Q Consensus 237 ~ 237 (337)
.
T Consensus 260 ~ 260 (304)
T 1rj9_A 260 T 260 (304)
T ss_dssp S
T ss_pred c
Confidence 3
No 110
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.28 E-value=1.4e-12 Score=137.97 Aligned_cols=85 Identities=15% Similarity=0.088 Sum_probs=74.8
Q ss_pred ccCCCcchhHHHHHHHHHhhC--CcEEEEcCCCCHHHH-------HHHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHh
Q 019702 180 MQVPEPSLQHKVMIEAVENHM--PEVIIVDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLI 250 (337)
Q Consensus 180 ~~~~S~g~k~r~~ia~al~~~--P~vlilDEp~~~ld~-------~~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll 250 (337)
...+||||+||++||++|.++ |+++||||||++||. +.+..+++.|.|||+++|+++++. .||+++ .|
T Consensus 519 ~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~i~-~ADrIi--~L 595 (993)
T 2ygr_A 519 AATLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEHDEDTIE-HADWIV--DI 595 (993)
T ss_dssp GGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHH-TCSEEE--EE
T ss_pred cccCCHHHHHHHHHHHHHhhCCCCcEEEEeCcccCCCHHHHHHHHHHHHHHHHcCCEEEEECCCHHHHH-hCCEEE--Ee
Confidence 456799999999999999998 599999999999984 445667788999999999999775 799999 88
Q ss_pred ------cCceEEEecCHHHHHHh
Q 019702 251 ------GGVDTVTLGDEEARARR 267 (337)
Q Consensus 251 ------~~G~iv~~g~~~~~~~~ 267 (337)
++|++++.|+++++...
T Consensus 596 gp~aG~~gG~iv~~G~~~e~~~~ 618 (993)
T 2ygr_A 596 GPGAGEHGGRIVHSGPYDELLRN 618 (993)
T ss_dssp CSSSGGGCCSCCEEECHHHHHHC
T ss_pred cCccccCCCEEEEeeCHHHhhhh
Confidence 68999999999998763
No 111
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.28 E-value=3.1e-12 Score=114.37 Aligned_cols=122 Identities=16% Similarity=0.110 Sum_probs=64.0
Q ss_pred cccCCCEEEEEcCCCCcHHHHHHHHHc--ccccc---CCCeEEEEcCCccccc---------CCCCcccccccchhccCC
Q 019702 118 LLHYGKSILFVGRPGVGKTTVMREIAR--VLSDE---FQKRVVIVDTSNEIGG---------DGDIPHSAIGTARRMQVP 183 (337)
Q Consensus 118 ~v~~g~~v~IiGpnGsGKTTLL~~l~g--ll~~~---~~~~i~~v~~~~ei~~---------~~~~~~~~~~~~~~~~~~ 183 (337)
-+++|++++|+||||||||||++.|++ ++++. .+..+.+++....+.. .+..++............
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 99 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAF 99 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHHHhhCeEEEecC
Confidence 478999999999999999999999999 45441 1356677654331100 000110000000001112
Q ss_pred CcchhHHH---HHHHHHhhCCcEEEEcCCCCHHHHH-------------------HHHHHH-hcCCeEEEEEcCcchhH
Q 019702 184 EPSLQHKV---MIEAVENHMPEVIIVDEIGTEAEAH-------------------ACRSIA-ERGVMLIGTAHGEWLEN 239 (337)
Q Consensus 184 S~g~k~r~---~ia~al~~~P~vlilDEp~~~ld~~-------------------~l~~~~-~~G~tvi~t~H~~~~~~ 239 (337)
+..+.... ....+...+|++|++|||++.++.. .+..++ +.|.+||+++|......
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~ 178 (243)
T 1n0w_A 100 NTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVD 178 (243)
T ss_dssp SHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------
T ss_pred CHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCC
Confidence 22222211 1122223589999999999865431 122233 45999999999876543
No 112
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.28 E-value=1.1e-12 Score=138.47 Aligned_cols=84 Identities=15% Similarity=0.125 Sum_probs=74.1
Q ss_pred ccCCCcchhHHHHHHHHHhhCC--cEEEEcCCCCHHHH-------HHHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHh
Q 019702 180 MQVPEPSLQHKVMIEAVENHMP--EVIIVDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLI 250 (337)
Q Consensus 180 ~~~~S~g~k~r~~ia~al~~~P--~vlilDEp~~~ld~-------~~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll 250 (337)
...+||||+||++||++|.++| +++||||||++||. +.+..+++.|.|||+++|+++++. .||+++ .|
T Consensus 502 ~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~i~-~ADrIi--~L 578 (972)
T 2r6f_A 502 AGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTML-AADYLI--DI 578 (972)
T ss_dssp GGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHHHH-SCSEEE--EE
T ss_pred cccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH-hCCEEE--Ee
Confidence 4567999999999999999984 99999999999983 456677778999999999999775 699999 88
Q ss_pred ------cCceEEEecCHHHHHH
Q 019702 251 ------GGVDTVTLGDEEARAR 266 (337)
Q Consensus 251 ------~~G~iv~~g~~~~~~~ 266 (337)
++|++++.|+++++..
T Consensus 579 gpgaG~~gG~iv~~G~~~e~~~ 600 (972)
T 2r6f_A 579 GPGAGIHGGEVVAAGTPEEVMN 600 (972)
T ss_dssp CSSSGGGCCSEEEEECTTTTTT
T ss_pred CCCccCCCCEEEEecCHHHHHh
Confidence 6899999999998765
No 113
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.25 E-value=4.2e-11 Score=106.92 Aligned_cols=133 Identities=12% Similarity=0.060 Sum_probs=73.4
Q ss_pred hcccCCCEEEEEcCCCCcHHHHHHHHHcccccc-CCCeEEEEcCCc---ccccCCCCcccc--ccc-------chhccCC
Q 019702 117 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDE-FQKRVVIVDTSN---EIGGDGDIPHSA--IGT-------ARRMQVP 183 (337)
Q Consensus 117 ~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~-~~~~i~~v~~~~---ei~~~~~~~~~~--~~~-------~~~~~~~ 183 (337)
...++|++++|+||||||||||+++|+|+++|+ ..+.+.+...+. +......++... +.. .......
T Consensus 11 ~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~~~ 90 (219)
T 1s96_A 11 HHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAEVF 90 (219)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEET
T ss_pred ccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcccccCceEEECCHHHHHHHHhcCHHHHHHHHH
Confidence 347889999999999999999999999998752 122222221111 110011111110 000 0000000
Q ss_pred --CcchhHHHHHHHHHhhCCcEEEEcCCCCHHHHHHHHH---HHhcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEe
Q 019702 184 --EPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRS---IAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 258 (337)
Q Consensus 184 --S~g~k~r~~ia~al~~~P~vlilDEp~~~ld~~~l~~---~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~ 258 (337)
..|.... . .......++++||| +|...... +...|.+|++++|+++.+.. | ++.+| .
T Consensus 91 ~~~yg~~~~-~-v~~~l~~G~illLD-----LD~~~~~~i~~~l~~~~tI~i~th~~~~l~~---R----l~~rG----~ 152 (219)
T 1s96_A 91 GNYYGTSRE-A-IEQVLATGVDVFLD-----IDWQGAQQIRQKMPHARSIFILPPSKIELDR---R----LRGRG----Q 152 (219)
T ss_dssp TEEEEEEHH-H-HHHHHTTTCEEEEE-----CCHHHHHHHHHHCTTCEEEEEECSSHHHHHH---H----HHTTS----C
T ss_pred hccCCCCHH-H-HHHHHhcCCeEEEE-----ECHHHHHHHHHHccCCEEEEEECCCHHHHHH---H----HHHcC----C
Confidence 0122211 1 33445568999999 66544333 33468999999999886543 2 56777 6
Q ss_pred cCHHHHHHh
Q 019702 259 GDEEARARR 267 (337)
Q Consensus 259 g~~~~~~~~ 267 (337)
++++++.++
T Consensus 153 ~~~e~i~~r 161 (219)
T 1s96_A 153 DSEEVIAKR 161 (219)
T ss_dssp SCHHHHHHH
T ss_pred CCHHHHHHH
Confidence 788887754
No 114
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.21 E-value=3.2e-12 Score=134.09 Aligned_cols=85 Identities=13% Similarity=0.082 Sum_probs=74.2
Q ss_pred hccCCCcchhHHHHHHHHHhhCCc--EEEEcCCCCHHHH-------HHHHHHHhcCCeEEEEEcCcchhHHhhchHHHHH
Q 019702 179 RMQVPEPSLQHKVMIEAVENHMPE--VIIVDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDL 249 (337)
Q Consensus 179 ~~~~~S~g~k~r~~ia~al~~~P~--vlilDEp~~~ld~-------~~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~l 249 (337)
....+|+||+||++||++|.++|+ ++||||||++||. +.+..+++.|.|||+++|++++.. .||+++ .
T Consensus 376 ~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~G~TVIvVeHdl~~l~-~aD~ii--~ 452 (842)
T 2vf7_A 376 STPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNSLFVVEHDLDVIR-RADWLV--D 452 (842)
T ss_dssp BGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHHHT-TCSEEE--E
T ss_pred CcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHH-hCCEEE--E
Confidence 345689999999999999999995 9999999999973 456677788999999999999664 699999 8
Q ss_pred h------cCceEEEecCHHHHHH
Q 019702 250 I------GGVDTVTLGDEEARAR 266 (337)
Q Consensus 250 l------~~G~iv~~g~~~~~~~ 266 (337)
| ++|++++.|+++++..
T Consensus 453 lgpgaG~~~G~iv~~g~~~~~~~ 475 (842)
T 2vf7_A 453 VGPEAGEKGGEILYSGPPEGLKH 475 (842)
T ss_dssp ECSSSGGGCCSEEEEECGGGGGG
T ss_pred eCCCcccCCCEEEEecCHHHHHh
Confidence 8 6899999999998765
No 115
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.20 E-value=7.7e-13 Score=123.73 Aligned_cols=126 Identities=13% Similarity=0.087 Sum_probs=62.1
Q ss_pred eEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHcc-ccccCC--------------CeEEEEcCCccc
Q 019702 99 GLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARV-LSDEFQ--------------KRVVIVDTSNEI 163 (337)
Q Consensus 99 ~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gl-l~~~~~--------------~~i~~v~~~~ei 163 (337)
+|+++|++..+ ++++++.+ +|+||||||||||++.|.|. +.|..+ ..+.++.+....
T Consensus 3 ~l~~~~~~~~~--l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~ 74 (301)
T 2qnr_A 3 NLPNQVHRKSV--KKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGV 74 (301)
T ss_dssp -----------------CEEE------EEEEETTSSHHHHHHHHHC------------------------CEEEEC---C
T ss_pred CCcceECCEEE--EcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCc
Confidence 78899987655 78888766 99999999999999999997 655422 001111111100
Q ss_pred ----cc--CCCCc-----ccccccc---------hhccCCCcchhHHHHHHHHHhhCCcEEEEcCCCCH-HHH---HHHH
Q 019702 164 ----GG--DGDIP-----HSAIGTA---------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTE-AEA---HACR 219 (337)
Q Consensus 164 ----~~--~~~~~-----~~~~~~~---------~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~~-ld~---~~l~ 219 (337)
.. ..+.. ....... ..+..+|+|++|++.+++|++ ++++|||+++ +|. +.+.
T Consensus 75 ~~~ltv~Dt~g~~~~~~~~e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~----ll~ldePt~~~Ld~~~~~~l~ 150 (301)
T 2qnr_A 75 KLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHC----CFYFISPFGHGLKPLDVAFMK 150 (301)
T ss_dssp CEEEEEEEEC-----------CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCE----EEEEECSSSSSCCHHHHHHHH
T ss_pred ccCcchhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhh----eeeeecCcccCCCHHHHHHHH
Confidence 00 00000 0000000 223345888888877666653 9999999874 664 4555
Q ss_pred HHHhc-CCeEEEEEcCcc
Q 019702 220 SIAER-GVMLIGTAHGEW 236 (337)
Q Consensus 220 ~~~~~-G~tvi~t~H~~~ 236 (337)
.+.+. ++++|++.||+.
T Consensus 151 ~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 151 AIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp HHTTTSCEEEEECCGGGS
T ss_pred HHHhcCCEEEEEEeCCCC
Confidence 55543 788999999985
No 116
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.16 E-value=7.2e-13 Score=135.25 Aligned_cols=154 Identities=14% Similarity=0.122 Sum_probs=70.8
Q ss_pred EeeEEEEECCccccchhhhhhc--------ccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEE-------EcCC-
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDL--------LHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVI-------VDTS- 160 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~--------v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~-------v~~~- 160 (337)
+++++..|......+++.++.. +.- ..++|+|||||||||||++|+|++.|...+.|.+ ....
T Consensus 13 ~~~l~~~~~~~~r~ll~~id~l~~~gv~~~l~l-p~iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~~~~~~ 91 (608)
T 3szr_A 13 ENNLCSQYEEKVRPCIDLIDSLRALGVEQDLAL-PAIAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKLKKLVN 91 (608)
T ss_dssp -------CHHHHHHHHHHHHHHHHHSCCSSCCC-CCEECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEEEEECSS
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHhCCCCCcccC-CeEEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEEecCCc
Confidence 4578888865433334444321 111 1399999999999999999999987731222211 1110
Q ss_pred -ccccc-CCCCcccc-cccc-----------hhc-cCCCcchhHHHHHHHHHhhCCcEEEEcCC------CCHHHH----
Q 019702 161 -NEIGG-DGDIPHSA-IGTA-----------RRM-QVPEPSLQHKVMIEAVENHMPEVIIVDEI------GTEAEA---- 215 (337)
Q Consensus 161 -~ei~~-~~~~~~~~-~~~~-----------~~~-~~~S~g~k~r~~ia~al~~~P~vlilDEp------~~~ld~---- 215 (337)
.++.. .+.+++.. +... ... ....+.....+.++.+....|+++++||| ++++|.
T Consensus 92 ~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~~~~~~~~s~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~ 171 (608)
T 3szr_A 92 EDKWRGKVSYQDYEIEISDASEVEKEINKAQNAIAGEGMGISHELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGY 171 (608)
T ss_dssp SSCCEEEESCC---CCCCCHHHHHTTHHHHHHHHHCSSSCCCSCCEEEEEEESSSCCEEEEECCC------CCSSCSHHH
T ss_pred cccceeEEeeecccccCCCHHHHHHHHHHHHHHhcCCccccchHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHH
Confidence 01100 00011100 0000 000 00000001111111222346999999999 888772
Q ss_pred ---HHHHHHHh--cCCeEEEEEcCcchhHHhhchHHHHHhc
Q 019702 216 ---HACRSIAE--RGVMLIGTAHGEWLENIIKNPILSDLIG 251 (337)
Q Consensus 216 ---~~l~~~~~--~G~tvi~t~H~~~~~~~~~d~v~~~ll~ 251 (337)
+.+..+.. .+.++++++|+.+.+...+.+++..+..
T Consensus 172 ~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~ 212 (608)
T 3szr_A 172 KIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDP 212 (608)
T ss_dssp HHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCS
T ss_pred HHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhh
Confidence 34445432 3678899999998776666666654433
No 117
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.09 E-value=1.7e-11 Score=117.37 Aligned_cols=134 Identities=10% Similarity=0.067 Sum_probs=75.9
Q ss_pred hhhhhhcccC--CCEEEEEcCCCCcHHHHHHHHHccccccCC---CeEEEEc--CCcccccC-CCC------cccc----
Q 019702 112 IDMVYDLLHY--GKSILFVGRPGVGKTTVMREIARVLSDEFQ---KRVVIVD--TSNEIGGD-GDI------PHSA---- 173 (337)
Q Consensus 112 ~~~l~~~v~~--g~~v~IiGpnGsGKTTLL~~l~gll~~~~~---~~i~~v~--~~~ei~~~-~~~------~~~~---- 173 (337)
...+++.+.+ |+.++|+||||||||||+++|+|++.|+.+ +.+.+-. ...++... ..+ ++..
T Consensus 158 ~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~~~~~~~~~~I~~~~q~~~~~~ 237 (365)
T 1lw7_A 158 WKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQAMQYSDYPQMALGHQRYIDYA 237 (365)
T ss_dssp GGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTTSSCTTTHHHHHHHHHHHHHHH
T ss_pred hhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCcccCChhHHHHHHHHHHHHHHHH
Confidence 3457777888 999999999999999999999999988631 2222100 00011000 000 0000
Q ss_pred ------cccc------hhccCCCcchhHHHHHHHHH-hhCCcEEEEcC---CCC------HHH-------HHHHHHHH-h
Q 019702 174 ------IGTA------RRMQVPEPSLQHKVMIEAVE-NHMPEVIIVDE---IGT------EAE-------AHACRSIA-E 223 (337)
Q Consensus 174 ------~~~~------~~~~~~S~g~k~r~~ia~al-~~~P~vlilDE---p~~------~ld-------~~~l~~~~-~ 223 (337)
+... ......+.+.+++..++++. ..+|+++++|| |+. ++| .+++.++. +
T Consensus 238 ~t~~~nl~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~ 317 (365)
T 1lw7_A 238 VRHSHKIAFIDTDFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDK 317 (365)
T ss_dssp HHHCSSEEEESSCHHHHHHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHHHHHG
T ss_pred HhccCCEEEEeCCchHHHHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHH
Confidence 0000 00001133445555666665 46999999999 653 445 23344434 3
Q ss_pred cCCeEEEEEcCcchhHHhhchHH
Q 019702 224 RGVMLIGTAHGEWLENIIKNPIL 246 (337)
Q Consensus 224 ~G~tvi~t~H~~~~~~~~~d~v~ 246 (337)
.|.++++++|. +..+.+++.+.
T Consensus 318 ~~~~ililde~-~~~~r~~~~i~ 339 (365)
T 1lw7_A 318 YKVPYIEIESP-SYLDRYNQVKA 339 (365)
T ss_dssp GGCCCEEEECS-SHHHHHHHHHH
T ss_pred cCCCEEEeCCC-CHHHHHHHHHH
Confidence 48899999987 45667777765
No 118
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.04 E-value=6.6e-11 Score=103.24 Aligned_cols=113 Identities=11% Similarity=0.025 Sum_probs=66.9
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccc-----cccCCC-----------eEEEEcCC
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVL-----SDEFQK-----------RVVIVDTS 160 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll-----~~~~~~-----------~i~~v~~~ 160 (337)
+++++++|+. . .+++ +.+.+|..++|+|+||||||||++.|+|.. .|+.+. .+.+++.+
T Consensus 6 ~~~~~~~~~~-~--~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~Dt~ 80 (210)
T 1pui_A 6 YQQTHFVMSA-P--DIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLP 80 (210)
T ss_dssp -----CEEEE-S--SGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEECC
T ss_pred hhhhhheeec-C--CHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEEECc
Confidence 5689999963 2 2555 778899999999999999999999999987 444221 12222221
Q ss_pred cc------------c----ccC-----------------CCCccc--cc------------ccchhccCCCcchhHH-HH
Q 019702 161 NE------------I----GGD-----------------GDIPHS--AI------------GTARRMQVPEPSLQHK-VM 192 (337)
Q Consensus 161 ~e------------i----~~~-----------------~~~~~~--~~------------~~~~~~~~~S~g~k~r-~~ 192 (337)
.. + ... ...... .+ ....+.+.+|+|++++ +.
T Consensus 81 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s~~~~~~~~~ 160 (210)
T 1pui_A 81 GYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLASGARKAQLN 160 (210)
T ss_dssp CCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCHHHHHHHHH
T ss_pred CCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCCCchhHHHHHH
Confidence 10 0 000 000000 00 0013344568899888 78
Q ss_pred HHHHHhhCCcEEEEcCCCCHHH
Q 019702 193 IEAVENHMPEVIIVDEIGTEAE 214 (337)
Q Consensus 193 ia~al~~~P~vlilDEp~~~ld 214 (337)
.+++++.+|.+++.|||++++|
T Consensus 161 ~~~~~~~~~~~~~~~~~~Sal~ 182 (210)
T 1pui_A 161 MVREAVLAFNGDVQVETFSSLK 182 (210)
T ss_dssp HHHHHHGGGCSCEEEEECBTTT
T ss_pred HHHHHHHhcCCCCceEEEeecC
Confidence 8899999999889999999888
No 119
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.04 E-value=2.5e-11 Score=118.42 Aligned_cols=131 Identities=13% Similarity=0.020 Sum_probs=71.5
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCC--------------eEEEEcCCcc
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK--------------RVVIVDTSNE 162 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~--------------~i~~v~~~~e 162 (337)
+.+++++|++... ++++++.+ +|+|+||||||||++.|+|...+..+. .+.++.+...
T Consensus 14 ~~~l~~~y~~~~v--l~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~ 85 (418)
T 2qag_C 14 FANLPNQVYRKSV--KRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGG 85 (418)
T ss_dssp -CCCCCCTTTTTC--C-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC-----
T ss_pred EEecceeECCEEE--ecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCC
Confidence 4578888876544 77887765 999999999999999999998642110 0111111000
Q ss_pred cccCCCCcccccccchhc--------------cCCCcchhHHHHHHHHHhhCCc---EEEEcCCC-CHHH---HHHHHHH
Q 019702 163 IGGDGDIPHSAIGTARRM--------------QVPEPSLQHKVMIEAVENHMPE---VIIVDEIG-TEAE---AHACRSI 221 (337)
Q Consensus 163 i~~~~~~~~~~~~~~~~~--------------~~~S~g~k~r~~ia~al~~~P~---vlilDEp~-~~ld---~~~l~~~ 221 (337)
+.....+.. ..+..... ..++.++++++++++++..+|+ +|++|||| .++| ...+..+
T Consensus 86 ~~~~Ltv~D-t~g~~~~~~~~~~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L 164 (418)
T 2qag_C 86 VQLLLTIVD-TPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRL 164 (418)
T ss_dssp -CEEEEEEE-CC-----------CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHH
T ss_pred cccceeeee-chhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHH
Confidence 000000000 00000000 0012334456668888899999 99999998 4544 4556666
Q ss_pred HhcCCeEEEEEcCcch
Q 019702 222 AERGVMLIGTAHGEWL 237 (337)
Q Consensus 222 ~~~G~tvi~t~H~~~~ 237 (337)
.. +..+|++.|-.+.
T Consensus 165 ~~-~v~iIlVinK~Dl 179 (418)
T 2qag_C 165 HE-KVNIIPLIAKADT 179 (418)
T ss_dssp TT-TSEEEEEEESTTS
T ss_pred hc-cCcEEEEEEcccC
Confidence 54 7777777776553
No 120
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.03 E-value=5.3e-13 Score=117.42 Aligned_cols=113 Identities=20% Similarity=0.139 Sum_probs=68.9
Q ss_pred ccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEcCCcccccCC------------CCccc----cccc-c----
Q 019702 119 LHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDG------------DIPHS----AIGT-A---- 177 (337)
Q Consensus 119 v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~~~~ei~~~~------------~~~~~----~~~~-~---- 177 (337)
.++|++++|+||||||||||++.|+|++.| .+.++++...+.... ..+.. .+.. .
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~----~i~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 78 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE----RVALLPMDHYYKDLGHLPLEERLRVNYDHPDAFDLALYLEHAQALL 78 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG----GEEEEEGGGCBCCCTTSCHHHHHHSCTTSGGGBCHHHHHHHHHHHH
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC----CeEEEecCccccCcccccHHHhcCCCCCChhhhhHHHHHHHHHHHH
Confidence 357899999999999999999999999875 466665543221000 00000 0000 0
Q ss_pred ------hhccCCCcch----hHHHHHHHHHhhCCcEEEEcCCCCH-------HHH-------HHHHHH-HhcCCeEEEEE
Q 019702 178 ------RRMQVPEPSL----QHKVMIEAVENHMPEVIIVDEIGTE-------AEA-------HACRSI-AERGVMLIGTA 232 (337)
Q Consensus 178 ------~~~~~~S~g~----k~r~~ia~al~~~P~vlilDEp~~~-------ld~-------~~l~~~-~~~G~tvi~t~ 232 (337)
......|.|+ +|++++++++..+|.++++|||+++ +|. ..+.+. .+.|.+++.++
T Consensus 79 ~~~~~~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l~r~~~~~g~t~~~~~ 158 (211)
T 3asz_A 79 RGLPVEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRRLKRDVLERGRSLEGVV 158 (211)
T ss_dssp TTCCEEECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred cCCCcCCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 0111235564 3566778888888999889999877 552 222222 34588887777
Q ss_pred cCc
Q 019702 233 HGE 235 (337)
Q Consensus 233 H~~ 235 (337)
|+.
T Consensus 159 ~~~ 161 (211)
T 3asz_A 159 AQY 161 (211)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 121
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.00 E-value=1.6e-10 Score=115.59 Aligned_cols=65 Identities=9% Similarity=0.074 Sum_probs=56.9
Q ss_pred CcchhHHHHHHHHHhhCC--cEEEEcCCCCHHHH-------HHHHHHHhcCCeEEEEEcCcchhHHhhchHHHHHhcC
Q 019702 184 EPSLQHKVMIEAVENHMP--EVIIVDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGG 252 (337)
Q Consensus 184 S~g~k~r~~ia~al~~~P--~vlilDEp~~~ld~-------~~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~ 252 (337)
|||++||++||++++.+| ++||+|||++++|. +.+..+.+ |.+||++||+++.+. .||+++ ++.+
T Consensus 399 SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~-~~~vi~itH~~~~~~-~~d~~~--~~~~ 472 (517)
T 4ad8_A 399 SGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD-TRQVLVVTHLAQIAA-RAHHHY--KVEK 472 (517)
T ss_dssp CSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH-HSEEEEECCCHHHHH-HSSEEE--EEEC
T ss_pred CHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHHHHH-hCCEEE--EEec
Confidence 999999999999999999 99999999999994 34555555 899999999999775 699999 8844
No 122
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=98.97 E-value=4.5e-11 Score=101.41 Aligned_cols=48 Identities=19% Similarity=0.169 Sum_probs=41.5
Q ss_pred eEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHcccccc
Q 019702 99 GLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDE 149 (337)
Q Consensus 99 ~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~ 149 (337)
+++++|+... +++++++.+++|++++|+||||||||||+++|+|++ |.
T Consensus 12 ~~~~~~g~~~--~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~ 59 (158)
T 1htw_A 12 FSMLRFGKKF--AEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GH 59 (158)
T ss_dssp HHHHHHHHHH--HHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TC
T ss_pred HHHHHHHHHH--HHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CC
Confidence 5566665443 388999999999999999999999999999999999 76
No 123
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=98.96 E-value=9.4e-10 Score=106.66 Aligned_cols=118 Identities=14% Similarity=0.173 Sum_probs=66.4
Q ss_pred cccCCCEEEEEcCCCCcHHHHHHHH--HccccccC---CCeEEEEcCCccccc--------CCCC-cccccccchhccCC
Q 019702 118 LLHYGKSILFVGRPGVGKTTVMREI--ARVLSDEF---QKRVVIVDTSNEIGG--------DGDI-PHSAIGTARRMQVP 183 (337)
Q Consensus 118 ~v~~g~~v~IiGpnGsGKTTLL~~l--~gll~~~~---~~~i~~v~~~~ei~~--------~~~~-~~~~~~~~~~~~~~ 183 (337)
-+++|++++|+||||||||||++.+ .++++++. ++.++|++....+.. ..++ ++..+... .+...
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni-~~~~~ 252 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNV-AYARA 252 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTE-EEEEC
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcE-EEecc
Confidence 4789999999999999999999954 56665532 356777765432110 0011 11000000 00011
Q ss_pred CcchhHHHHHH----HHHhhCCcEEEEcCCCCHHH-------------------HHHHHHHH-hcCCeEEEEEcCcc
Q 019702 184 EPSLQHKVMIE----AVENHMPEVIIVDEIGTEAE-------------------AHACRSIA-ERGVMLIGTAHGEW 236 (337)
Q Consensus 184 S~g~k~r~~ia----~al~~~P~vlilDEp~~~ld-------------------~~~l~~~~-~~G~tvi~t~H~~~ 236 (337)
.....+...+. .....+|++|++|||++.++ +..+..++ +.|++||+++|...
T Consensus 253 ~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~ 329 (400)
T 3lda_A 253 YNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVA 329 (400)
T ss_dssp CSHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--
T ss_pred CChHHHHHHHHHHHHHHHhcCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecc
Confidence 12222222222 22236799999999987543 12344555 45999999999843
No 124
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.95 E-value=4.8e-12 Score=109.41 Aligned_cols=44 Identities=11% Similarity=-0.112 Sum_probs=30.0
Q ss_pred HHHHHHhcCCeEEEEEcC-cchhHHhhchHHHHHhcCceEEEecCHHHH
Q 019702 217 ACRSIAERGVMLIGTAHG-EWLENIIKNPILSDLIGGVDTVTLGDEEAR 264 (337)
Q Consensus 217 ~l~~~~~~G~tvi~t~H~-~~~~~~~~d~v~~~ll~~G~iv~~g~~~~~ 264 (337)
.+..+.+.+.++|.|+|. ++.++.+|++++ .+|++++.|+++-+
T Consensus 138 ~~~~~~~~~~~ii~tsh~~~~~~e~~~~~i~----~~g~~~~~~~~~~~ 182 (189)
T 2bdt_A 138 EFESKGIDERYFYNTSHLQPTNLNDIVKNLK----TNPRFIFCMAGDPL 182 (189)
T ss_dssp HHHHTTCCTTSEEECSSSCGGGHHHHHHHHH----HCGGGSCC------
T ss_pred HHhhcCCCccEEEeCCCCChhhHHHHHHHHh----hCCcEEEeecCCch
Confidence 344444457899999998 888888998877 78999998888754
No 125
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.92 E-value=1.9e-09 Score=101.81 Aligned_cols=117 Identities=23% Similarity=0.192 Sum_probs=73.2
Q ss_pred ccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEcCCcc--------------cc--cC----CCCcccccc---
Q 019702 119 LHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNE--------------IG--GD----GDIPHSAIG--- 175 (337)
Q Consensus 119 v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~~~~e--------------i~--~~----~~~~~~~~~--- 175 (337)
.++|++++|+||||||||||++.|+|++.|+ ++.|.+...... ++ .. ...|...+.
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~-~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l 204 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWLKNH-GFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAI 204 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhc-CCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHH
Confidence 3679999999999999999999999999987 567766543210 00 00 000100000
Q ss_pred -c--chh--------ccCC---CcchhHHHHHHHHHhhCCcEEEEcCCCCHHHHHHHHHHHh-cCCeEEEEEcCcc
Q 019702 176 -T--ARR--------MQVP---EPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRSIAE-RGVMLIGTAHGEW 236 (337)
Q Consensus 176 -~--~~~--------~~~~---S~g~k~r~~ia~al~~~P~vlilDEp~~~ld~~~l~~~~~-~G~tvi~t~H~~~ 236 (337)
. ... .+.. ..-+.+-..+++++..++.++++|.++...-.+.+..+.+ .+.++|++||...
T Consensus 205 ~~~~~~~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~~~~~~~~~~~~~~~it~iilTKlD~ 280 (328)
T 3e70_C 205 QHAKARGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGNAIVEQARQFNEAVKIDGIILTKLDA 280 (328)
T ss_dssp HHHHHHTCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTTHHHHHHHHHHHHSCCCEEEEECGGG
T ss_pred HHHHhccchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHHHHHHHHHHHHHhcCCCEEEEeCcCC
Confidence 0 000 0111 1122333457888888888999998877544566666663 5899999999543
No 126
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=98.90 E-value=3.3e-10 Score=108.37 Aligned_cols=76 Identities=13% Similarity=0.064 Sum_probs=62.7
Q ss_pred CCcchhHHHHHHHHHh---------hCCcEEEEcCCCCHHHHHH---H-HHHHhcCCeEEEEEcCcchhHHhhchHHHHH
Q 019702 183 PEPSLQHKVMIEAVEN---------HMPEVIIVDEIGTEAEAHA---C-RSIAERGVMLIGTAHGEWLENIIKNPILSDL 249 (337)
Q Consensus 183 ~S~g~k~r~~ia~al~---------~~P~vlilDEp~~~ld~~~---l-~~~~~~G~tvi~t~H~~~~~~~~~d~v~~~l 249 (337)
+|+||+|++++|++|+ .+|+||+||||++++|... + ..+.+.+.|+|++|| .+. .|++++ .
T Consensus 266 lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~qt~i~~th-~~~---~~~~i~--~ 339 (359)
T 2o5v_A 266 ASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVPQAIVTGTE-LAP---GAALTL--R 339 (359)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSSEEEEEESS-CCT---TCSEEE--E
T ss_pred CCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcCcEEEEEEe-ccc---cCCEEE--E
Confidence 5999999999999999 7999999999999999532 2 223333468888889 443 899999 8
Q ss_pred hcCceEEEecCHHHH
Q 019702 250 IGGVDTVTLGDEEAR 264 (337)
Q Consensus 250 l~~G~iv~~g~~~~~ 264 (337)
+++|+++..|+++++
T Consensus 340 l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 340 AQAGRFTPVADEEMQ 354 (359)
T ss_dssp EETTEEEECCCTTTS
T ss_pred EECCEEEecCCHHHH
Confidence 999999999998765
No 127
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.90 E-value=6.3e-10 Score=104.22 Aligned_cols=93 Identities=25% Similarity=0.264 Sum_probs=64.0
Q ss_pred hhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEcCCcccccCCCCccc-ccc---cchhccCCCcchhHHH
Q 019702 116 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHS-AIG---TARRMQVPEPSLQHKV 191 (337)
Q Consensus 116 ~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~~~~ei~~~~~~~~~-~~~---~~~~~~~~S~g~k~r~ 191 (337)
++...++++++|+|||||||||+++.|++++.+. ++++.+++....-.. ...+. .+. ........++++.+++
T Consensus 98 ~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~-g~kV~lv~~D~~r~~--a~eqL~~~~~~~gl~~~~~~s~~~~~~v 174 (306)
T 1vma_A 98 NVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDE-GKSVVLAAADTFRAA--AIEQLKIWGERVGATVISHSEGADPAAV 174 (306)
T ss_dssp CCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEEEECTTCHH--HHHHHHHHHHHHTCEEECCSTTCCHHHH
T ss_pred cccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhc-CCEEEEEccccccHH--HHHHHHHHHHHcCCcEEecCCccCHHHH
Confidence 3445678999999999999999999999999876 677777653211000 00000 000 0011223467788887
Q ss_pred ---HHHHHHhhCCcEEEEcCCCC
Q 019702 192 ---MIEAVENHMPEVIIVDEIGT 211 (337)
Q Consensus 192 ---~ia~al~~~P~vlilDEp~~ 211 (337)
++++++..+||++|+|||+.
T Consensus 175 ~~~al~~a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 175 AFDAVAHALARNKDVVIIDTAGR 197 (306)
T ss_dssp HHHHHHHHHHTTCSEEEEEECCC
T ss_pred HHHHHHHHHhcCCCEEEEECCCc
Confidence 88889999999999999976
No 128
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.89 E-value=1.7e-09 Score=100.80 Aligned_cols=131 Identities=16% Similarity=0.086 Sum_probs=76.8
Q ss_pred cCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEcCCcccccCCCCccccccc-chhcc--C--CCcchhHHHHHH
Q 019702 120 HYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGT-ARRMQ--V--PEPSLQHKVMIE 194 (337)
Q Consensus 120 ~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~~~~ei~~~~~~~~~~~~~-~~~~~--~--~S~g~k~r~~ia 194 (337)
.+|++++|+|||||||||+++.|++.+.+..+.+|.+++....-.. ....+.. ....+ . .......+.+++
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~----a~eqL~~~~~~~gl~~~~~~~~~~l~~al~ 178 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIA----AVEQLKTYAELLQAPLEVCYTKEEFQQAKE 178 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTT----HHHHHHHHHTTTTCCCCBCSSHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccch----HHHHHHHHHHhcCCCeEecCCHHHHHHHHH
Confidence 4689999999999999999999999998755678888875431100 0000000 00000 0 111223344444
Q ss_pred HHHhhCCcEEEEcCCCC-HHHHHH---HHHHHh----cCCeEEE-EEcCcchhHHhhchHHHHHhcCceEEEe
Q 019702 195 AVENHMPEVIIVDEIGT-EAEAHA---CRSIAE----RGVMLIG-TAHGEWLENIIKNPILSDLIGGVDTVTL 258 (337)
Q Consensus 195 ~al~~~P~vlilDEp~~-~ld~~~---l~~~~~----~G~tvi~-t~H~~~~~~~~~d~v~~~ll~~G~iv~~ 258 (337)
...+||++|+|.|.. ..+... +..+.. .+..+++ ++|..+.+..+++++. .++.+.++..
T Consensus 179 --~~~~~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~~~~~~~~~~~~--~l~~~giVlt 247 (296)
T 2px0_A 179 --LFSEYDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAKYEDMKHIVKRFS--SVPVNQYIFT 247 (296)
T ss_dssp --HGGGSSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCHHHHHHHTTTTS--SSCCCEEEEE
T ss_pred --HhcCCCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCHHHHHHHHHHHh--cCCCCEEEEe
Confidence 458999999995532 112222 222322 2334444 4788777777888776 5666666653
No 129
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.88 E-value=4.1e-09 Score=94.00 Aligned_cols=47 Identities=19% Similarity=0.214 Sum_probs=34.5
Q ss_pred hhhh-hhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEcC
Q 019702 112 IDMV-YDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDT 159 (337)
Q Consensus 112 ~~~l-~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~~ 159 (337)
++.+ ..-+++|++++|+||||||||||+..++....+. +..+.++..
T Consensus 12 LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~-~~~v~~~~~ 59 (247)
T 2dr3_A 12 VDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKM-GEPGIYVAL 59 (247)
T ss_dssp HHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHT-TCCEEEEES
T ss_pred HHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhc-CCeEEEEEc
Confidence 5554 4568899999999999999999976665544333 566777653
No 130
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.82 E-value=5.9e-09 Score=99.32 Aligned_cols=113 Identities=16% Similarity=0.161 Sum_probs=68.6
Q ss_pred cccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEcCCccccc----CCCCcccccccchhccCCCcchhHHHHH
Q 019702 118 LLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGG----DGDIPHSAIGTARRMQVPEPSLQHKVMI 193 (337)
Q Consensus 118 ~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~~~~ei~~----~~~~~~~~~~~~~~~~~~S~g~k~r~~i 193 (337)
-+++|+++.|.||||||||||+..++...... ++.+.|++....... ..++....+.. .. .....+.+.+
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~-g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i---~~--~~~~e~~l~~ 130 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAA-GGIAAFIDAEHALDPEYAKKLGVDTDSLLV---SQ--PDTGEQALEI 130 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHT-TCCEEEEESSCCCCHHHHHHTTCCGGGCEE---EC--CSSHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhC-CCeEEEEECCCCcCHHHHHHcCCCHHHeEE---ec--CCCHHHHHHH
Confidence 46689999999999999999998888766544 567888765322110 00111111100 01 1122333456
Q ss_pred HHHHh--hCCcEEEEcCCCCHH----------HH----------HHHHHH----HhcCCeEEEEEcCcc
Q 019702 194 EAVEN--HMPEVIIVDEIGTEA----------EA----------HACRSI----AERGVMLIGTAHGEW 236 (337)
Q Consensus 194 a~al~--~~P~vlilDEp~~~l----------d~----------~~l~~~----~~~G~tvi~t~H~~~ 236 (337)
+.++. .+|++||+||+++.. |. +.+..+ .+.|.+||+++|...
T Consensus 131 ~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~ 199 (349)
T 2zr9_A 131 ADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELRE 199 (349)
T ss_dssp HHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-
T ss_pred HHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Confidence 66665 459999999997743 21 223333 466999999999764
No 131
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.81 E-value=3.2e-09 Score=98.82 Aligned_cols=101 Identities=17% Similarity=0.195 Sum_probs=65.3
Q ss_pred hhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEcCCcccccCCCCccc-ccccchhccC------CCcc
Q 019702 114 MVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHS-AIGTARRMQV------PEPS 186 (337)
Q Consensus 114 ~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~~~~ei~~~~~~~~~-~~~~~~~~~~------~S~g 186 (337)
++++. +|++++++|+|||||||+++.|++++.+. ++++.+++....-... ..+. .+.......+ .++.
T Consensus 92 ~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~-~~~v~l~~~d~~~~~~--~~ql~~~~~~~~l~~~~~~~~~~p~ 166 (295)
T 1ls1_A 92 LPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGK-GRRPLLVAADTQRPAA--REQLRLLGEKVGVPVLEVMDGESPE 166 (295)
T ss_dssp CCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHT-TCCEEEEECCSSCHHH--HHHHHHHHHHHTCCEEECCTTCCHH
T ss_pred eeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEecCCcccHhH--HHHHHHhcccCCeEEEEcCCCCCHH
Confidence 45555 88999999999999999999999999876 6788877653221000 0000 0000000111 1222
Q ss_pred hhHHHHHHHHHhhCCcEEEEcCC-CCHHHHHHHH
Q 019702 187 LQHKVMIEAVENHMPEVIIVDEI-GTEAEAHACR 219 (337)
Q Consensus 187 ~k~r~~ia~al~~~P~vlilDEp-~~~ld~~~l~ 219 (337)
.-++.+++.+...++|++|+||| +.+.|...+.
T Consensus 167 ~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~ 200 (295)
T 1ls1_A 167 SIRRRVEEKARLEARDLILVDTAGRLQIDEPLMG 200 (295)
T ss_dssp HHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHH
T ss_pred HHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHH
Confidence 34567888888899999999999 7777754433
No 132
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=98.72 E-value=4.1e-09 Score=90.61 Aligned_cols=66 Identities=11% Similarity=0.093 Sum_probs=52.1
Q ss_pred hccCCCcchhHHHHHHHHHhhC----CcEEEEcCCCCHHHHH-------HHHHHHhcCCeEEEEEcCcchhHHhhchHH
Q 019702 179 RMQVPEPSLQHKVMIEAVENHM----PEVIIVDEIGTEAEAH-------ACRSIAERGVMLIGTAHGEWLENIIKNPIL 246 (337)
Q Consensus 179 ~~~~~S~g~k~r~~ia~al~~~----P~vlilDEp~~~ld~~-------~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~ 246 (337)
....+|||++||+++|++++.. |++++||||++++|.. .+.++. .+.++|++||+.... ..||+++
T Consensus 61 ~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~-~~~~~ivith~~~~~-~~ad~i~ 137 (173)
T 3kta_B 61 RIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESS-KESQFIVITLRDVMM-ANADKII 137 (173)
T ss_dssp CGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSCHHHH-TTCSEEE
T ss_pred ccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhc-cCCEEEEEEecHHHH-HhCCEEE
Confidence 4567899999999999999854 6999999999999953 233332 356899999997654 6899987
No 133
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.69 E-value=1.6e-08 Score=95.39 Aligned_cols=38 Identities=18% Similarity=0.304 Sum_probs=28.3
Q ss_pred hhhhhhcc-cCC--CEEEEEcCCCCcHHHHHHHHHc-ccccc
Q 019702 112 IDMVYDLL-HYG--KSILFVGRPGVGKTTVMREIAR-VLSDE 149 (337)
Q Consensus 112 ~~~l~~~v-~~g--~~v~IiGpnGsGKTTLL~~l~g-ll~~~ 149 (337)
...+...+ ..| ..++|.||||+||||+++++++ ++.++
T Consensus 23 ~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~ 64 (354)
T 1sxj_E 23 TNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPG 64 (354)
T ss_dssp HHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHSCTT
T ss_pred HHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCC
Confidence 34444445 433 2499999999999999999999 66665
No 134
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.63 E-value=3.2e-08 Score=96.29 Aligned_cols=138 Identities=12% Similarity=0.130 Sum_probs=83.1
Q ss_pred chhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccc-------cCCCeEEEEcCCc--ccc--cCCC----------C
Q 019702 111 HIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSD-------EFQKRVVIVDTSN--EIG--GDGD----------I 169 (337)
Q Consensus 111 ~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~-------~~~~~i~~v~~~~--ei~--~~~~----------~ 169 (337)
....+++.++.+..++|+|+|||||||||++|++..+. +....+.++.... .+. ...+ +
T Consensus 146 ~~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L 225 (416)
T 1udx_A 146 EKRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGL 225 (416)
T ss_dssp CEEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCS
T ss_pred eEeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCcceEEEEeccccccchhhhhhh
Confidence 45678889999999999999999999999999998421 0112233332211 110 0000 0
Q ss_pred ccccc-------------cc-chhccCCCcchhHHHHHHHHHhhCCcEEEE---cCCCCHHHHHHHHHH-HhcCCeEEEE
Q 019702 170 PHSAI-------------GT-ARRMQVPEPSLQHKVMIEAVENHMPEVIIV---DEIGTEAEAHACRSI-AERGVMLIGT 231 (337)
Q Consensus 170 ~~~~~-------------~~-~~~~~~~S~g~k~r~~ia~al~~~P~vlil---DEp~~~ld~~~l~~~-~~~G~tvi~t 231 (337)
..... .. ......+|.++++++.+++++...|.+|++ |-+.. ...+.+... .+.|.+++.+
T Consensus 226 ~~~fl~~~era~~lL~vvDls~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~-~~~~~l~~~l~~~g~~vi~i 304 (416)
T 1udx_A 226 GLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE-EAVKALADALAREGLAVLPV 304 (416)
T ss_dssp CHHHHHHHTSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH-HHHHHHHHHHHTTTSCEEEC
T ss_pred hHHHHHHHHHHHhhhEEeCCccCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH-HHHHHHHHHHHhcCCeEEEE
Confidence 00000 00 011223578899999999999999999998 32222 223334333 3457666655
Q ss_pred E-cCcchhHHhhchHHHHH
Q 019702 232 A-HGEWLENIIKNPILSDL 249 (337)
Q Consensus 232 ~-H~~~~~~~~~d~v~~~l 249 (337)
| |..+-++.+.+.++..+
T Consensus 305 SA~~g~gi~eL~~~i~~~l 323 (416)
T 1udx_A 305 SALTGAGLPALKEALHALV 323 (416)
T ss_dssp CTTTCTTHHHHHHHHHHHH
T ss_pred ECCCccCHHHHHHHHHHHH
Confidence 4 66666777777777533
No 135
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.63 E-value=1.8e-08 Score=99.62 Aligned_cols=45 Identities=31% Similarity=0.372 Sum_probs=39.2
Q ss_pred hhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEc
Q 019702 113 DMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD 158 (337)
Q Consensus 113 ~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~ 158 (337)
+++++.+.+|++++|+|+||||||||++.|+|++.++ ++.|.+..
T Consensus 284 ~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~-~G~V~l~g 328 (503)
T 2yhs_A 284 EPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQ-GKSVMLAA 328 (503)
T ss_dssp CCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEEC
T ss_pred CCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhc-CCeEEEec
Confidence 4567778899999999999999999999999999886 67777653
No 136
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.60 E-value=2.9e-08 Score=97.67 Aligned_cols=47 Identities=26% Similarity=0.386 Sum_probs=39.0
Q ss_pred hhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEc
Q 019702 112 IDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD 158 (337)
Q Consensus 112 ~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~ 158 (337)
++.+..-+.+|++++|.|+||+|||||+..+++...+..+..+.++.
T Consensus 193 LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s 239 (454)
T 2r6a_A 193 LDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFS 239 (454)
T ss_dssp HHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEE
T ss_pred HHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 66666668999999999999999999999999988764355677764
No 137
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.57 E-value=5.5e-09 Score=99.03 Aligned_cols=57 Identities=23% Similarity=0.325 Sum_probs=47.5
Q ss_pred eEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEc
Q 019702 99 GLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD 158 (337)
Q Consensus 99 ~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~ 158 (337)
+++++|+.... ++++++.+.+|++++|+||||||||||+++|+|++.|+ ++++.++.
T Consensus 34 ~~~~~~~~~~~--l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~-~g~v~i~~ 90 (337)
T 2qm8_A 34 RADHRAAVRDL--IDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAA-GHKVAVLA 90 (337)
T ss_dssp SHHHHHHHHHH--HHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHT-TCCEEEEE
T ss_pred CcccccChHHH--HHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhC-CCEEEEEE
Confidence 56666654333 88999999999999999999999999999999999887 56676654
No 138
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.57 E-value=9.9e-08 Score=94.39 Aligned_cols=96 Identities=19% Similarity=0.353 Sum_probs=62.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEcCCcccccCCCCcccccccchhccCCCcchhHHHHHHHHHhhCCcE
Q 019702 124 SILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPEV 203 (337)
Q Consensus 124 ~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~~~~ei~~~~~~~~~~~~~~~~~~~~S~g~k~r~~ia~al~~~P~v 203 (337)
.++|+||||+|||||++++++.... .+..+.. .++ .. .-...++.+.+..++.|....|.+
T Consensus 51 gvLL~GppGtGKT~Laraia~~~~~----~f~~is~-~~~------~~--------~~~g~~~~~~r~lf~~A~~~~p~I 111 (476)
T 2ce7_A 51 GILLVGPPGTGKTLLARAVAGEANV----PFFHISG-SDF------VE--------LFVGVGAARVRDLFAQAKAHAPCI 111 (476)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTC----CEEEEEG-GGT------TT--------CCTTHHHHHHHHHHHHHHHTCSEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCC----CeeeCCH-HHH------HH--------HHhcccHHHHHHHHHHHHhcCCCE
Confidence 4899999999999999999996532 2333321 111 00 011234567788899999999999
Q ss_pred EEEcCCCC----------HHH-------HHHHHHHH----hcCCeEEEEEcCcchh
Q 019702 204 IIVDEIGT----------EAE-------AHACRSIA----ERGVMLIGTAHGEWLE 238 (337)
Q Consensus 204 lilDEp~~----------~ld-------~~~l~~~~----~~G~tvi~t~H~~~~~ 238 (337)
|++||+.+ +.+ ...+..+- ..++.||++||..+..
T Consensus 112 LfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~L 167 (476)
T 2ce7_A 112 VFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDIL 167 (476)
T ss_dssp EEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGS
T ss_pred EEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhh
Confidence 99999933 122 12222221 3478899999987643
No 139
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.54 E-value=3.2e-09 Score=102.57 Aligned_cols=59 Identities=15% Similarity=0.137 Sum_probs=44.6
Q ss_pred CC--cEEEEcCCCCHHHHHHHH-------HH-HhcCCeEEEEEcCcchhHHhhchHHHHHhcCc-eEEEecCH
Q 019702 200 MP--EVIIVDEIGTEAEAHACR-------SI-AERGVMLIGTAHGEWLENIIKNPILSDLIGGV-DTVTLGDE 261 (337)
Q Consensus 200 ~P--~vlilDEp~~~ld~~~l~-------~~-~~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G-~iv~~g~~ 261 (337)
+| |++++|||+...|.+.+. .. ...|.|++ +|....+..+|+++.. ++..| +++..|+.
T Consensus 139 dP~~di~ildeel~~~D~~~~~k~~~~l~~~~~~~g~ti~--sh~~~~~~~l~~~i~~-~L~~G~~~~~~~~~ 208 (392)
T 1ni3_A 139 DPIRDLSIIVDELLIKDAEFVEKHLEGLRKITSRGANTLE--MKAKKEEQAIIEKVYQ-YLTETKQPIRKGDW 208 (392)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCSSS--HHHHHHHHHHHHHHHH-HHHTTCSCGGGSCC
T ss_pred CcchhhhhchhhhHHHHHHHHHHHHHHHHHHHHhcCCccc--cccHHHHHHHHHHHHH-HhccCCceeecCCC
Confidence 78 999999999999975543 22 33466664 9999999999999985 67888 77766654
No 140
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=98.54 E-value=1.3e-08 Score=95.69 Aligned_cols=54 Identities=11% Similarity=0.038 Sum_probs=37.9
Q ss_pred CCcchhHHHHHHHHHhhCCcEEEEcCCCCHHHHHHHHHHHhcCCeEEEEEcCcchhHHh
Q 019702 183 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRSIAERGVMLIGTAHGEWLENII 241 (337)
Q Consensus 183 ~S~g~k~r~~ia~al~~~P~vlilDEp~~~ld~~~l~~~~~~G~tvi~t~H~~~~~~~~ 241 (337)
+|+|++|++..++++..+||++ ||| ..-.+.+..+ ..+.+|+.++|+...++.+
T Consensus 142 ls~g~~Q~~~ad~ill~k~dl~--de~--~~l~~~l~~l-~~~~~ii~~sh~~~~~~~l 195 (318)
T 1nij_A 142 FTIAQSQVGYADRILLTKTDVA--GEA--EKLHERLARI-NARAPVYTVTHGDIDLGLL 195 (318)
T ss_dssp CHHHHHHHHTCSEEEEECTTTC--SCT--HHHHHHHHHH-CSSSCEEECCSSCCCGGGG
T ss_pred chHHHHHHHhCCEEEEECcccC--CHH--HHHHHHHHHh-CCCCeEEEecccCCCHHHH
Confidence 4889999987777777888877 888 2223445454 3689999999986544443
No 141
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.50 E-value=3.1e-08 Score=88.21 Aligned_cols=36 Identities=22% Similarity=0.224 Sum_probs=22.8
Q ss_pred hhhhhhcccCCCEEEEEcCCCCcHHHHHHHHH-cccc
Q 019702 112 IDMVYDLLHYGKSILFVGRPGVGKTTVMREIA-RVLS 147 (337)
Q Consensus 112 ~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~-gll~ 147 (337)
..++++.+++|++++|+||||||||||+++|+ ++++
T Consensus 17 ~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 17 QGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp -----CCEECCCEEEEECSCC----CHHHHHHC----
T ss_pred cCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 67889999999999999999999999999999 9874
No 142
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.50 E-value=5e-08 Score=84.64 Aligned_cols=31 Identities=19% Similarity=0.488 Sum_probs=26.4
Q ss_pred hcccCCCEEEEEcCCCCcHHHHHHHHHcccc
Q 019702 117 DLLHYGKSILFVGRPGVGKTTVMREIARVLS 147 (337)
Q Consensus 117 ~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~ 147 (337)
+.+.+|++++|+||||||||||+++|+|+++
T Consensus 2 ~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 2 NAMNKANLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp ---CCCCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred CcCCCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 4567899999999999999999999999963
No 143
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.50 E-value=4.1e-07 Score=86.67 Aligned_cols=112 Identities=14% Similarity=0.124 Sum_probs=66.9
Q ss_pred cccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEcCCcccccC----CCCcccccccchhccCCCcchhHHHHH
Q 019702 118 LLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGD----GDIPHSAIGTARRMQVPEPSLQHKVMI 193 (337)
Q Consensus 118 ~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~~~~ei~~~----~~~~~~~~~~~~~~~~~S~g~k~r~~i 193 (337)
-+++|+++.|.||||||||||+..++....+. ++.+.|++........ .++....+.. ....+ . .+.+.+
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~-gg~VlyId~E~s~~~~ra~rlgv~~~~l~i---~~~~~-~-e~~l~~ 130 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKM-GGVAAFIDAEHALDPVYAKNLGVDLKSLLI---SQPDH-G-EQALEI 130 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHT-TCCEEEEESSCCCCHHHHHHHTCCGGGCEE---ECCSS-H-HHHHHH
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhc-CCeEEEEecccccchHHHHHcCCchhhhhh---hhccC-H-HHHHHH
Confidence 46789999999999999999999999988765 5778888654322100 0011001000 00111 1 222333
Q ss_pred HHHH--hhCCcEEEEcCCCCHH---H-------------H-------HHHHHHH-hcCCeEEEEEcCc
Q 019702 194 EAVE--NHMPEVIIVDEIGTEA---E-------------A-------HACRSIA-ERGVMLIGTAHGE 235 (337)
Q Consensus 194 a~al--~~~P~vlilDEp~~~l---d-------------~-------~~l~~~~-~~G~tvi~t~H~~ 235 (337)
+..+ ...|+++++|+.++-. + . ..+..++ +.|.+||+|.|-.
T Consensus 131 ~~~l~~~~~~dlvVIDSi~~l~~~~el~g~~G~~q~~~qar~la~~L~~L~~lak~~~~tVI~inqv~ 198 (356)
T 3hr8_A 131 VDELVRSGVVDLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMSQALRKIAGSVNKSKAVVIFTNQIR 198 (356)
T ss_dssp HHHHHHTSCCSEEEEECTTTCCCHHHHTTCCCSSCSSHHHHHHHHHHHHHHHHHHTSSCEEEEEEESS
T ss_pred HHHHhhhcCCCeEEehHhhhhcChhhhcccchhhHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeeee
Confidence 4433 3579999999975421 1 1 1223334 5589999999983
No 144
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=98.48 E-value=5.3e-08 Score=95.00 Aligned_cols=66 Identities=8% Similarity=0.074 Sum_probs=52.9
Q ss_pred ccCCCcchhHHHHHHHHHh----hCCcEEEEcCCCCHHHHHH-------HHHHHhcCCeEEEEEcCcchhHHhhchHH
Q 019702 180 MQVPEPSLQHKVMIEAVEN----HMPEVIIVDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPIL 246 (337)
Q Consensus 180 ~~~~S~g~k~r~~ia~al~----~~P~vlilDEp~~~ld~~~-------l~~~~~~G~tvi~t~H~~~~~~~~~d~v~ 246 (337)
...+|+||+++++||++++ .+|++++||||++++|... +..+.+.|.++|+|||+.... ..||+++
T Consensus 331 ~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~-~~~d~~~ 407 (430)
T 1w1w_A 331 MEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMF-EKSDALV 407 (430)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHH-TTCSEEE
T ss_pred cccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHH-HhCCEEE
Confidence 4568999999999999999 4799999999999999532 333333478999999997654 5688887
No 145
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=98.48 E-value=5.6e-08 Score=93.14 Aligned_cols=69 Identities=16% Similarity=0.024 Sum_probs=52.9
Q ss_pred ccCCCcchhHHH------HHHHHHhhC-CcEEEEcCCCCHHHHHH---HH-HHHh--cCCeEEEEEcCcchhHHhhchHH
Q 019702 180 MQVPEPSLQHKV------MIEAVENHM-PEVIIVDEIGTEAEAHA---CR-SIAE--RGVMLIGTAHGEWLENIIKNPIL 246 (337)
Q Consensus 180 ~~~~S~g~k~r~------~ia~al~~~-P~vlilDEp~~~ld~~~---l~-~~~~--~G~tvi~t~H~~~~~~~~~d~v~ 246 (337)
...+|+||++|+ ++|+++..+ |++||+|||++++|... +. .+.+ .+.+||+|||+.+ ...+||+++
T Consensus 278 ~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th~~~-~~~~~d~~~ 356 (371)
T 3auy_A 278 IDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHRE-LEDVADVII 356 (371)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEESCGG-GGGGCSEEE
T ss_pred hHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEEChHH-HHhhCCEEE
Confidence 346899999988 456788889 99999999999999543 22 2222 3468999999987 467899988
Q ss_pred HHHhc
Q 019702 247 SDLIG 251 (337)
Q Consensus 247 ~~ll~ 251 (337)
++.
T Consensus 357 --~l~ 359 (371)
T 3auy_A 357 --NVK 359 (371)
T ss_dssp --EEE
T ss_pred --EEE
Confidence 664
No 146
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.47 E-value=1.2e-07 Score=96.63 Aligned_cols=40 Identities=23% Similarity=0.525 Sum_probs=36.6
Q ss_pred chhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccC
Q 019702 111 HIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEF 150 (337)
Q Consensus 111 ~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~ 150 (337)
+++.+++.+..|+.++|+||||||||||+++|++++++..
T Consensus 49 ~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~ 88 (604)
T 3k1j_A 49 AVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTET 88 (604)
T ss_dssp HHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSS
T ss_pred hHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCccc
Confidence 3788999999999999999999999999999999997753
No 147
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.46 E-value=6.8e-08 Score=95.55 Aligned_cols=39 Identities=18% Similarity=0.113 Sum_probs=36.3
Q ss_pred chhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccC
Q 019702 111 HIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEF 150 (337)
Q Consensus 111 ~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~ 150 (337)
.++++++.+++ ++++|+|||||||||||++|+|++.|+.
T Consensus 19 ~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~ 57 (483)
T 3euj_A 19 GFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDL 57 (483)
T ss_dssp TEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCT
T ss_pred cccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCC
Confidence 37899999999 9999999999999999999999998873
No 148
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.45 E-value=8.7e-08 Score=84.02 Aligned_cols=40 Identities=25% Similarity=0.331 Sum_probs=33.0
Q ss_pred ccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEcC
Q 019702 119 LHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDT 159 (337)
Q Consensus 119 v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~~ 159 (337)
.++|++++|+||||||||||+++|+|++.+. +..+.++..
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~-g~~~g~v~~ 58 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ-GLPAEVVPM 58 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT-TCCEEEEES
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc-CCceEEEec
Confidence 4679999999999999999999999999875 334555543
No 149
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=98.43 E-value=3e-09 Score=98.80 Aligned_cols=96 Identities=11% Similarity=0.067 Sum_probs=57.6
Q ss_pred cCCCEEEEEcCCCCcHHHHHHHHHccccccC--CCeEEEEcCCccccc------------------CCCCccc-cccc--
Q 019702 120 HYGKSILFVGRPGVGKTTVMREIARVLSDEF--QKRVVIVDTSNEIGG------------------DGDIPHS-AIGT-- 176 (337)
Q Consensus 120 ~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~--~~~i~~v~~~~ei~~------------------~~~~~~~-~~~~-- 176 (337)
.++.+++|+||+|||||||++.|.+++.+.. ...+.++.+..-+.. ..+.|.. ....
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l~~~~g~p~a~d~~~l~ 108 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTHEDQLKLNEQFKNNKLLQGRGLPGTHDMKLLQ 108 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBCCHHHHHHHHHHTTTCGGGSSSCSTTSBCHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccccCChHHHHHHhccccccchhhhccCcchhHHHHHH
Confidence 3467999999999999999999999997631 122333233211100 0001110 0000
Q ss_pred -----ch---------------hccCCCcchhHHHHHHHHHhhCCcEEEEcCCCCHHHH
Q 019702 177 -----AR---------------RMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEA 215 (337)
Q Consensus 177 -----~~---------------~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~~ld~ 215 (337)
.. .-..+|+||++|+.+|.+...+|+|||+||+++++|.
T Consensus 109 ~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~~~~IlIlEG~~~~ld~ 167 (290)
T 1odf_A 109 EVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKLPVDIFILEGWFLGFNP 167 (290)
T ss_dssp HHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEESSCSEEEEEESSTTCCC
T ss_pred HHHHHhhccCccccCcceeeccCccccCCccccccccccceEcCCCEEEEeCccccCCc
Confidence 00 0112478889988776333338999999999998774
No 150
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.42 E-value=1.5e-07 Score=89.82 Aligned_cols=37 Identities=19% Similarity=0.403 Sum_probs=32.2
Q ss_pred hhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHcccc-cc
Q 019702 112 IDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLS-DE 149 (337)
Q Consensus 112 ~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~-~~ 149 (337)
++.+++. .+|++++|+||||||||||+++|+|+.. +.
T Consensus 206 l~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~ 243 (358)
T 2rcn_A 206 LKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEIL 243 (358)
T ss_dssp HHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCC
T ss_pred HHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccc
Confidence 6667664 4799999999999999999999999987 65
No 151
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.42 E-value=1.3e-07 Score=88.38 Aligned_cols=56 Identities=21% Similarity=0.229 Sum_probs=43.3
Q ss_pred EeeEEEEECCccccchhhhhhcc-------------------cCCCEEEEEcCCCCcHHHHHHHHHcccc--ccCCCeEE
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLL-------------------HYGKSILFVGRPGVGKTTVMREIARVLS--DEFQKRVV 155 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v-------------------~~g~~v~IiGpnGsGKTTLL~~l~gll~--~~~~~~i~ 155 (337)
++++++.|. ..++.+++.+ .+|++++|+||||||||||+++|+|++. |+ .+.+.
T Consensus 40 ~~~v~~~y~----~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~-~G~i~ 114 (308)
T 1sq5_A 40 LEEVAEIYL----PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPE-HRRVE 114 (308)
T ss_dssp HHHHHHTHH----HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTT-CCCEE
T ss_pred hHhHHHHHH----HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCC-CCeEE
Confidence 335666662 2367777766 7889999999999999999999999987 66 45666
Q ss_pred EE
Q 019702 156 IV 157 (337)
Q Consensus 156 ~v 157 (337)
++
T Consensus 115 vi 116 (308)
T 1sq5_A 115 LI 116 (308)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 152
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=98.40 E-value=8.9e-07 Score=79.00 Aligned_cols=110 Identities=16% Similarity=0.192 Sum_probs=62.2
Q ss_pred cCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEcC--CcccccCCCCccccccc-chhccCCCcchhHHHHHHHH
Q 019702 120 HYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDT--SNEIGGDGDIPHSAIGT-ARRMQVPEPSLQHKVMIEAV 196 (337)
Q Consensus 120 ~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~~--~~ei~~~~~~~~~~~~~-~~~~~~~S~g~k~r~~ia~a 196 (337)
.+|.++++.||+||||||++..++.-+... +.++.++.. ... +. ..+... ++. .....+.+. . -.+..+
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~~~~-g~kVli~~~~~d~r-~~-~~i~sr-lG~~~~~~~~~~~-~---~i~~~i 81 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRLEYA-DVKYLVFKPKIDTR-SI-RNIQSR-TGTSLPSVEVESA-P---EILNYI 81 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHHHHT-TCCEEEEEECCCGG-GC-SSCCCC-CCCSSCCEEESST-H---HHHHHH
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHHHhc-CCEEEEEEeccCch-HH-HHHHHh-cCCCccccccCCH-H---HHHHHH
Confidence 468899999999999999877666555433 556666621 111 11 011100 110 001111111 1 122222
Q ss_pred Hh----hCCcEEEEcCCCC--HHHHHHHHHHHhcCCeEEEEEcCcch
Q 019702 197 EN----HMPEVIIVDEIGT--EAEAHACRSIAERGVMLIGTAHGEWL 237 (337)
Q Consensus 197 l~----~~P~vlilDEp~~--~ld~~~l~~~~~~G~tvi~t~H~~~~ 237 (337)
.. .+|++|++||... ..-.+.+..+++.|..||++.|+.++
T Consensus 82 ~~~~~~~~~dvViIDEaQ~l~~~~ve~l~~L~~~gi~Vil~Gl~~df 128 (223)
T 2b8t_A 82 MSNSFNDETKVIGIDEVQFFDDRICEVANILAENGFVVIISGLDKNF 128 (223)
T ss_dssp HSTTSCTTCCEEEECSGGGSCTHHHHHHHHHHHTTCEEEEECCSBCT
T ss_pred HHHhhCCCCCEEEEecCccCcHHHHHHHHHHHhCCCeEEEEeccccc
Confidence 22 3599999999953 22345677777789999999996554
No 153
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.40 E-value=8.2e-08 Score=93.49 Aligned_cols=43 Identities=26% Similarity=0.356 Sum_probs=35.4
Q ss_pred EEEECCccccchhhhhhcccCCCE--EEEEcCCCCcHHHHHHHHHccc
Q 019702 101 TCRVGRAVSGHIDMVYDLLHYGKS--ILFVGRPGVGKTTVMREIARVL 146 (337)
Q Consensus 101 ~~r~~~~~~~~~~~l~~~v~~g~~--v~IiGpnGsGKTTLL~~l~gll 146 (337)
+++|+.. . ++++++.+.+|++ ++|+||||||||||+++|+|+.
T Consensus 22 ~~~y~~~-~--L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~ 66 (427)
T 2qag_B 22 HVGFDSL-P--DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK 66 (427)
T ss_dssp CC-CC---C--HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC
T ss_pred EEEECCe-e--cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc
Confidence 4666543 2 8999999999999 9999999999999999999985
No 154
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=98.40 E-value=1.2e-07 Score=99.29 Aligned_cols=129 Identities=15% Similarity=0.157 Sum_probs=77.6
Q ss_pred hhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccC--CCeEEEEcCCccccc--------CCCCc-ccccc------
Q 019702 113 DMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEF--QKRVVIVDTSNEIGG--------DGDIP-HSAIG------ 175 (337)
Q Consensus 113 ~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~--~~~i~~v~~~~ei~~--------~~~~~-~~~~~------ 175 (337)
..+...+..|+.++|+|||||||||++..++....... +..+.++....++.. ..... ...++
T Consensus 100 ~~i~~~l~~~~~vii~gpTGSGKTtllp~ll~~~~~~~~~g~~ilvl~P~r~La~q~~~~l~~~~~~~v~~~vG~~i~~~ 179 (773)
T 2xau_A 100 DEFLKLYQNNQIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFE 179 (773)
T ss_dssp HHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHCGGGGTCEEEEEESCHHHHHHHHHHHHHHTTCCBTTTEEEEETTE
T ss_pred HHHHHHHhCCCeEEEECCCCCCHHHHHHHHHHHhccccCCCceEEecCchHHHHHHHHHHHHHHhCCchhheecceeccc
Confidence 34445577889999999999999999988866543322 344555433322110 00000 00001
Q ss_pred ----cchhccCCCcchhHHHHHHHHHhhCCcEEEEcCCCC-HHHHH----HHHHHHh---cCCeEEE-EEcCcchhHHh
Q 019702 176 ----TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGT-EAEAH----ACRSIAE---RGVMLIG-TAHGEWLENII 241 (337)
Q Consensus 176 ----~~~~~~~~S~g~k~r~~ia~al~~~P~vlilDEp~~-~ld~~----~l~~~~~---~G~tvi~-t~H~~~~~~~~ 241 (337)
......+.++|+.++..++..+..++++||+||+.. ++|.+ .+..+.. ...++++ +||+.+....+
T Consensus 180 ~~~~~~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~l~~~ 258 (773)
T 2xau_A 180 NKTSNKTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQRY 258 (773)
T ss_dssp EECCTTCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCHHHHHH
T ss_pred cccCCCCCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHHHHHHH
Confidence 012234568899999999988999999999999985 67743 3333322 2345555 47876544333
No 155
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.38 E-value=1e-07 Score=86.65 Aligned_cols=49 Identities=29% Similarity=0.325 Sum_probs=35.6
Q ss_pred EeeE-EEEE-CCccccchhhhhhcccC---CCEEEEEcCCCCcHHHHHHHHHcccc
Q 019702 97 IVGL-TCRV-GRAVSGHIDMVYDLLHY---GKSILFVGRPGVGKTTVMREIARVLS 147 (337)
Q Consensus 97 i~~l-~~r~-~~~~~~~~~~l~~~v~~---g~~v~IiGpnGsGKTTLL~~l~gll~ 147 (337)
++++ +++| .... +++++++.+.+ |+.++|+|++||||||+.+.|++.+.
T Consensus 20 ~~~~~~~~~~~~~~--~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 20 TGSLLHSPFDEEQQ--ILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp ------------CH--HHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred EcceeeEEecCcch--hhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5688 9999 4443 49999999999 99999999999999999999999764
No 156
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.38 E-value=3.9e-07 Score=83.68 Aligned_cols=124 Identities=19% Similarity=0.298 Sum_probs=71.1
Q ss_pred hhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEcCCcccccCCCCcccccccchhccCCCcchhHHH
Q 019702 112 IDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKV 191 (337)
Q Consensus 112 ~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~~~~ei~~~~~~~~~~~~~~~~~~~~S~g~k~r~ 191 (337)
++.+++.+++| ++|+||||||||||+++|++.+.+. .+.+... ++. ....+. ...+-+.
T Consensus 36 l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~~----~i~i~g~-~l~------~~~~~~--------~~~~i~~ 94 (274)
T 2x8a_A 36 FKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGLN----FISVKGP-ELL------NMYVGE--------SERAVRQ 94 (274)
T ss_dssp HHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTCE----EEEEETT-TTC------SSTTHH--------HHHHHHH
T ss_pred HHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCCC----EEEEEcH-HHH------hhhhhH--------HHHHHHH
Confidence 56666777777 9999999999999999999987652 3333321 111 000000 0011223
Q ss_pred HHHHHHhhCCcEEEEcCCCCHH------H--------HHHHHHHH----hcCCeEEEEEcCcchhHHhhchHHHHHhcC-
Q 019702 192 MIEAVENHMPEVIIVDEIGTEA------E--------AHACRSIA----ERGVMLIGTAHGEWLENIIKNPILSDLIGG- 252 (337)
Q Consensus 192 ~ia~al~~~P~vlilDEp~~~l------d--------~~~l~~~~----~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~- 252 (337)
.+..+....|.++++||..... + -..+..+- +....++++++..+.. |+.+ +..
T Consensus 95 vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~L----D~al---~r~g 167 (274)
T 2x8a_A 95 VFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDII----DPAI---LRPG 167 (274)
T ss_dssp HHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGS----CHHH---HSTT
T ss_pred HHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhC----CHhh---cCcc
Confidence 3444556789999999995421 0 11222221 2234677788877644 4444 332
Q ss_pred --ceEEEecCHHH
Q 019702 253 --VDTVTLGDEEA 263 (337)
Q Consensus 253 --G~iv~~g~~~~ 263 (337)
-+.+..+-|+.
T Consensus 168 Rfd~~i~~~~P~~ 180 (274)
T 2x8a_A 168 RLDKTLFVGLPPP 180 (274)
T ss_dssp SSCEEEECCSCCH
T ss_pred cCCeEEEeCCcCH
Confidence 24677777754
No 157
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.38 E-value=3.1e-07 Score=86.41 Aligned_cols=99 Identities=15% Similarity=0.176 Sum_probs=61.2
Q ss_pred hhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEcCCccccc-C---CCCc----ccccccc-hhccCC
Q 019702 113 DMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGG-D---GDIP----HSAIGTA-RRMQVP 183 (337)
Q Consensus 113 ~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~~~~ei~~-~---~~~~----~~~~~~~-~~~~~~ 183 (337)
.++++...++++++|+|+|||||||++..|++.+.+. ++++.+++....-.. . ..+. ...+... ......
T Consensus 96 ~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~-g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~~~ 174 (320)
T 1zu4_A 96 YRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAEL-GYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKLNA 174 (320)
T ss_dssp CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHT-TCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSSTTC
T ss_pred cCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCCCC
Confidence 4566777889999999999999999999999999876 778888764321000 0 0000 0000000 000001
Q ss_pred CcchhHHHHHHHHHhhCCcEEEEcCCCCH
Q 019702 184 EPSLQHKVMIEAVENHMPEVIIVDEIGTE 212 (337)
Q Consensus 184 S~g~k~r~~ia~al~~~P~vlilDEp~~~ 212 (337)
.+.....-.+..++..+.|++|+|=|...
T Consensus 175 ~p~~~~~~~l~~~~~~~yD~VIIDTpg~l 203 (320)
T 1zu4_A 175 DPASVVFDAIKKAKEQNYDLLLIDTAGRL 203 (320)
T ss_dssp CHHHHHHHHHHHHHHTTCSEEEEECCCCG
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCcc
Confidence 11122233455667789999999999764
No 158
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.37 E-value=2.1e-06 Score=78.83 Aligned_cols=72 Identities=22% Similarity=0.404 Sum_probs=50.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEcCCcccccCCCCcccccccchhccCCCcchhHHHHHHHHHhhC
Q 019702 121 YGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHM 200 (337)
Q Consensus 121 ~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~~~~ei~~~~~~~~~~~~~~~~~~~~S~g~k~r~~ia~al~~~ 200 (337)
++..++|.||||+||||+++++++... ..+..+.... +. . ....+.+...+..+..+...+
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~~----~~~~~i~~~~-l~------~--------~~~~~~~~~~~~~~~~~~~~~ 113 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATECS----ATFLNISAAS-LT------S--------KYVGDGEKLVRALFAVARHMQ 113 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTT----CEEEEEESTT-TS------S--------SSCSCHHHHHHHHHHHHHHTC
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHhC----CCeEEeeHHH-Hh------h--------cccchHHHHHHHHHHHHHHcC
Confidence 467899999999999999999999763 2333333211 10 0 011234556677788888899
Q ss_pred CcEEEEcCCCC
Q 019702 201 PEVIIVDEIGT 211 (337)
Q Consensus 201 P~vlilDEp~~ 211 (337)
|.+|++||+.+
T Consensus 114 ~~vl~iDEid~ 124 (297)
T 3b9p_A 114 PSIIFIDEVDS 124 (297)
T ss_dssp SEEEEEETGGG
T ss_pred CcEEEeccHHH
Confidence 99999999955
No 159
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.36 E-value=2.5e-07 Score=80.52 Aligned_cols=47 Identities=21% Similarity=0.229 Sum_probs=35.5
Q ss_pred eEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHcccc
Q 019702 99 GLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLS 147 (337)
Q Consensus 99 ~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~ 147 (337)
+++.+++.... .+...+..++|++++|+|||||||||+++.|++.+.
T Consensus 4 ~~~~~~~~~~~--~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 4 NIKWHECSVEK--VDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp ------CCCCH--HHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCcccccccCH--HHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 56666554443 677777788999999999999999999999999987
No 160
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.33 E-value=1.2e-06 Score=82.93 Aligned_cols=119 Identities=18% Similarity=0.257 Sum_probs=64.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEcCCcccccCCCCccccccc-chhcc--CCCcch---hHHHHHHHHH
Q 019702 124 SILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGT-ARRMQ--VPEPSL---QHKVMIEAVE 197 (337)
Q Consensus 124 ~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~~~~ei~~~~~~~~~~~~~-~~~~~--~~S~g~---k~r~~ia~al 197 (337)
.++|.||+|+|||||++.+++.+.+..+..+.+++...... +...+.. ....+ ....+. ...-.+...+
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~-----~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l 120 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRN-----FTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHL 120 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCS-----HHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCC-----HHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHH
Confidence 89999999999999999999988654224555554322110 0000000 00000 000111 1111122222
Q ss_pred --hhCCcEEEEcCCCCH--HHHHHHHHHH----h---cCCeEEEEEcCcchhHHhhchHHH
Q 019702 198 --NHMPEVIIVDEIGTE--AEAHACRSIA----E---RGVMLIGTAHGEWLENIIKNPILS 247 (337)
Q Consensus 198 --~~~P~vlilDEp~~~--ld~~~l~~~~----~---~G~tvi~t~H~~~~~~~~~d~v~~ 247 (337)
...|.+|++||+... .-...+..+. . .+..+|+++|+.+....+..++..
T Consensus 121 ~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l~~~~~~ 181 (389)
T 1fnn_A 121 RERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPSTRG 181 (389)
T ss_dssp HHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSCHHHHH
T ss_pred hhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHhCHHhhh
Confidence 245889999999764 1123333332 2 477899999998766556555543
No 161
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.29 E-value=1.7e-07 Score=91.79 Aligned_cols=125 Identities=11% Similarity=0.176 Sum_probs=71.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHccccccC-CCeEEEEcCCcccccCCCCcccccccchhccCCCcchhHHHHHHHHHhhC
Q 019702 122 GKSILFVGRPGVGKTTVMREIARVLSDEF-QKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHM 200 (337)
Q Consensus 122 g~~v~IiGpnGsGKTTLL~~l~gll~~~~-~~~i~~v~~~~ei~~~~~~~~~~~~~~~~~~~~S~g~k~r~~ia~al~~~ 200 (337)
+..++|.||+|+|||||+++|++.+.... +..+.++.... + ........ ..+. ...+...+..+
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~-~------~~~~~~~~------~~~~--~~~~~~~~~~~ 194 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEK-F------LNDLVDSM------KEGK--LNEFREKYRKK 194 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHH-H------HHHHHHHH------HTTC--HHHHHHHHTTT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHH-H------HHHHHHHH------Hccc--HHHHHHHhcCC
Confidence 35899999999999999999999885431 34455543211 1 00000000 0000 11233333448
Q ss_pred CcEEEEcCCCCHH----H----HHHHHHHHhcCCeEEEEEcCcc-hhHHhhchHHHHHhcCceEEEecCHH
Q 019702 201 PEVIIVDEIGTEA----E----AHACRSIAERGVMLIGTAHGEW-LENIIKNPILSDLIGGVDTVTLGDEE 262 (337)
Q Consensus 201 P~vlilDEp~~~l----d----~~~l~~~~~~G~tvi~t~H~~~-~~~~~~d~v~~~ll~~G~iv~~g~~~ 262 (337)
|++|++||+.... . ...+..+.+.|..+|+++|... ....+.+++..+ +..|.++....|+
T Consensus 195 ~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR-~~~g~~i~l~~p~ 264 (440)
T 2z4s_A 195 VDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSR-FQMGLVAKLEPPD 264 (440)
T ss_dssp CSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHH-HHSSBCCBCCCCC
T ss_pred CCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhh-ccCCeEEEeCCCC
Confidence 9999999995432 1 2334445677899999999743 222345555532 3446666666554
No 162
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.28 E-value=3.6e-07 Score=78.33 Aligned_cols=27 Identities=33% Similarity=0.591 Sum_probs=25.9
Q ss_pred ccCCCEEEEEcCCCCcHHHHHHHHHcc
Q 019702 119 LHYGKSILFVGRPGVGKTTVMREIARV 145 (337)
Q Consensus 119 v~~g~~v~IiGpnGsGKTTLL~~l~gl 145 (337)
+++|++++|+|||||||||+++.|++.
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhc
Confidence 678999999999999999999999998
No 163
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.27 E-value=3.5e-07 Score=78.73 Aligned_cols=28 Identities=25% Similarity=0.567 Sum_probs=25.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHcccccc
Q 019702 122 GKSILFVGRPGVGKTTVMREIARVLSDE 149 (337)
Q Consensus 122 g~~v~IiGpnGsGKTTLL~~l~gll~~~ 149 (337)
|++++|+||||||||||+++|+|++++.
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~~ 28 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPDS 28 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGGG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCcc
Confidence 5689999999999999999999999754
No 164
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.27 E-value=9.9e-07 Score=79.35 Aligned_cols=34 Identities=35% Similarity=0.545 Sum_probs=29.6
Q ss_pred hhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHcccc
Q 019702 112 IDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLS 147 (337)
Q Consensus 112 ~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~ 147 (337)
++.+++.+++| ++|+||||||||||+++|++.+.
T Consensus 41 ~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~ 74 (254)
T 1ixz_A 41 FHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR 74 (254)
T ss_dssp HHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT
T ss_pred HHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC
Confidence 56667777777 99999999999999999999874
No 165
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.26 E-value=2.7e-07 Score=80.41 Aligned_cols=28 Identities=21% Similarity=0.455 Sum_probs=23.9
Q ss_pred cCCCEEEEEcCCCCcHHHHHHHHHcccc
Q 019702 120 HYGKSILFVGRPGVGKTTVMREIARVLS 147 (337)
Q Consensus 120 ~~g~~v~IiGpnGsGKTTLL~~l~gll~ 147 (337)
++|+.++|+||||||||||++.|+|+++
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 4689999999999999999999999874
No 166
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.26 E-value=5.4e-07 Score=88.01 Aligned_cols=89 Identities=24% Similarity=0.276 Sum_probs=52.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEcCCccccc-CCCCc--ccccccchhccCCC---cchhHHHHHH
Q 019702 121 YGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGG-DGDIP--HSAIGTARRMQVPE---PSLQHKVMIE 194 (337)
Q Consensus 121 ~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~~~~ei~~-~~~~~--~~~~~~~~~~~~~S---~g~k~r~~ia 194 (337)
++.+++++|||||||||++..|+..+.+. ++++.+++....-.. ..... ....+ .......+ +..-.+-+++
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~-G~kVllv~~D~~r~~a~eqL~~~~~~~g-v~~~~~~~~~dp~~i~~~al~ 173 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKR-GYKVGLVAADVYRPAAYDQLLQLGNQIG-VQVYGEPNNQNPIEIAKKGVD 173 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHT-TCCEEEEEECCSCHHHHHHHHHHHHTTT-CCEECCTTCSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEEecCccchhHHHHHHHHHHhcC-CceeeccccCCHHHHHHHHHH
Confidence 46799999999999999999999999875 778877653321100 00000 00000 00000011 1111233555
Q ss_pred HHHhhCCcEEEEcCCCC
Q 019702 195 AVENHMPEVIIVDEIGT 211 (337)
Q Consensus 195 ~al~~~P~vlilDEp~~ 211 (337)
.+...++|++|+|+|+.
T Consensus 174 ~a~~~~~DvvIIDTaGr 190 (433)
T 3kl4_A 174 IFVKNKMDIIIVDTAGR 190 (433)
T ss_dssp HTTTTTCSEEEEEECCC
T ss_pred HHHhcCCCEEEEECCCC
Confidence 66667999999999974
No 167
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=98.24 E-value=2.8e-06 Score=80.42 Aligned_cols=117 Identities=11% Similarity=0.094 Sum_probs=79.1
Q ss_pred hhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEcCCc---cccc-----CCCCcccccccchhccCC
Q 019702 112 IDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSN---EIGG-----DGDIPHSAIGTARRMQVP 183 (337)
Q Consensus 112 ~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~~~~---ei~~-----~~~~~~~~~~~~~~~~~~ 183 (337)
++.+..-+.+|++++|.|+||+|||||+..++...... +..+.|+.-.. ++.. ...++...+ +.+.+
T Consensus 36 LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~-g~~Vl~fSlEms~~ql~~Rlls~~~~v~~~~l----~~g~L 110 (338)
T 4a1f_A 36 LDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALND-DRGVAVFSLEMSAEQLALRALSDLTSINMHDL----ESGRL 110 (338)
T ss_dssp HHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHT-TCEEEEEESSSCHHHHHHHHHHHHHCCCHHHH----HHTCC
T ss_pred HHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHc-CCeEEEEeCCCCHHHHHHHHHHHhhCCCHHHH----hcCCC
Confidence 55555558899999999999999999999998877553 56777664311 1100 001111111 22457
Q ss_pred CcchhHHHHHHHHHhhCCcEEEEcCCCCHHH-H-HHHHHHH-hc-CCeEEEEEc
Q 019702 184 EPSLQHKVMIEAVENHMPEVIIVDEIGTEAE-A-HACRSIA-ER-GVMLIGTAH 233 (337)
Q Consensus 184 S~g~k~r~~ia~al~~~P~vlilDEp~~~ld-~-~~l~~~~-~~-G~tvi~t~H 233 (337)
+.++.+++..|.....++++.|.|+|....+ + ..+..+. +. |..+|++-|
T Consensus 111 s~~e~~~l~~a~~~l~~~~l~I~d~~~~si~~i~~~ir~l~~~~gg~~lIVIDy 164 (338)
T 4a1f_A 111 DDDQWENLAKCFDHLSQKKLFFYDKSYVRIEQIRLQLRKLKSQHKELGIAFIDY 164 (338)
T ss_dssp CHHHHHHHHHHHHHHHHSCEEEECCTTCCHHHHHHHHHHHHHHCTTEEEEEEEE
T ss_pred CHHHHHHHHHHHHHHhcCCeEEeCCCCCcHHHHHHHHHHHHHhcCCCCEEEEec
Confidence 8899999999999999999999999975444 2 3355554 34 677877764
No 168
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.22 E-value=6e-07 Score=77.73 Aligned_cols=32 Identities=34% Similarity=0.334 Sum_probs=27.6
Q ss_pred cccCCCEEEEEcCCCCcHHHHHHHHHcccccc
Q 019702 118 LLHYGKSILFVGRPGVGKTTVMREIARVLSDE 149 (337)
Q Consensus 118 ~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~ 149 (337)
.+.+|++++|+|||||||||+++.|++++.|+
T Consensus 2 ~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~ 33 (207)
T 2j41_A 2 DNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTS 33 (207)
T ss_dssp --CCCCEEEEECSTTSCHHHHHHHHHHCTTCC
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHhhCCC
Confidence 46789999999999999999999999998553
No 169
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=98.22 E-value=2.6e-06 Score=76.02 Aligned_cols=110 Identities=18% Similarity=0.247 Sum_probs=63.0
Q ss_pred CCC-EEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEcCCc----ccc-cCCCCcccccccchhccCCCcchhHHHHHH
Q 019702 121 YGK-SILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSN----EIG-GDGDIPHSAIGTARRMQVPEPSLQHKVMIE 194 (337)
Q Consensus 121 ~g~-~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~~~~----ei~-~~~~~~~~~~~~~~~~~~~S~g~k~r~~ia 194 (337)
.|+ .+.+.|++|+||||++-.++..+... +.++.+++-.. +.. .....+..... ...+.+.......+.
T Consensus 4 ~g~l~I~~~~kgGvGKTt~a~~la~~l~~~-G~~V~v~d~D~q~~~~~~al~~gl~~~~~~----~~~~~~~~~~e~~l~ 78 (228)
T 2r8r_A 4 RGRLKVFLGAAPGVGKTYAMLQAAHAQLRQ-GVRVMAGVVETHGRAETEALLNGLPQQPLL----RTEYRGMTLEEMDLD 78 (228)
T ss_dssp CCCEEEEEESSTTSSHHHHHHHHHHHHHHT-TCCEEEEECCCTTCHHHHHHHTTSCBCCCE----EEEETTEEEEECCHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHHHHHC-CCCEEEEEeCCCCChhHHHHhcCccccCcc----eeecCCcccccccHH
Confidence 455 47899999999999977777766543 55665544322 110 00111110000 000112211112344
Q ss_pred HHHhhCCcEEEEcCCCCH--------HHHHHHHHHHhcCCeEEEEEcCc
Q 019702 195 AVENHMPEVIIVDEIGTE--------AEAHACRSIAERGVMLIGTAHGE 235 (337)
Q Consensus 195 ~al~~~P~vlilDEp~~~--------ld~~~l~~~~~~G~tvi~t~H~~ 235 (337)
.++...|+++|+||+... +-++.+....+.|..++.|+|-.
T Consensus 79 ~~L~~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~sgidVitT~Nlq 127 (228)
T 2r8r_A 79 ALLKAAPSLVLVDELAHTNAPGSRHTKRWQDIQELLAAGIDVYTTVNVQ 127 (228)
T ss_dssp HHHHHCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHHTTCEEEEEEEGG
T ss_pred HHHhcCCCEEEEeCCCCCCcccchhHHHHHHHHHHHcCCCCEEEEcccc
Confidence 555679999999999752 12455556778899999999844
No 170
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.19 E-value=4.1e-06 Score=77.65 Aligned_cols=100 Identities=21% Similarity=0.365 Sum_probs=61.9
Q ss_pred ccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEcCCcccccCCCCcccccccchhccCCCcchhHHHHHHHHHh
Q 019702 119 LHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVEN 198 (337)
Q Consensus 119 v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~~~~ei~~~~~~~~~~~~~~~~~~~~S~g~k~r~~ia~al~ 198 (337)
+.++..++|.||||+|||||++++++.+. .....+.. .++. .... .......+..+..+..
T Consensus 46 ~~~~~~vLL~Gp~GtGKT~la~ala~~~~----~~~i~v~~-~~l~------~~~~--------g~~~~~~~~~f~~a~~ 106 (301)
T 3cf0_A 46 MTPSKGVLFYGPPGCGKTLLAKAIANECQ----ANFISIKG-PELL------TMWF--------GESEANVREIFDKARQ 106 (301)
T ss_dssp CCCCSEEEEECSSSSSHHHHHHHHHHHTT----CEEEEECH-HHHH------HHHH--------TTCTTHHHHHHHHHHH
T ss_pred CCCCceEEEECCCCcCHHHHHHHHHHHhC----CCEEEEEh-HHHH------hhhc--------CchHHHHHHHHHHHHh
Confidence 56788999999999999999999999763 23333321 1110 0000 1112233456677777
Q ss_pred hCCcEEEEcCCCCHHH-----------------HHHHHHHH----hcCCeEEEEEcCcch
Q 019702 199 HMPEVIIVDEIGTEAE-----------------AHACRSIA----ERGVMLIGTAHGEWL 237 (337)
Q Consensus 199 ~~P~vlilDEp~~~ld-----------------~~~l~~~~----~~G~tvi~t~H~~~~ 237 (337)
..|.+|++||..+-.. ...+..+. ..++.||++|+..+.
T Consensus 107 ~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~~ 166 (301)
T 3cf0_A 107 AAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDI 166 (301)
T ss_dssp TCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGGG
T ss_pred cCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCccc
Confidence 8999999999864211 12233332 235678889987754
No 171
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.18 E-value=6.2e-07 Score=84.61 Aligned_cols=132 Identities=18% Similarity=0.266 Sum_probs=68.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHccccccC--CCeEEEEcCCcccccCCCCccccccc-chhcc--CCCcc---hhHHHHH
Q 019702 122 GKSILFVGRPGVGKTTVMREIARVLSDEF--QKRVVIVDTSNEIGGDGDIPHSAIGT-ARRMQ--VPEPS---LQHKVMI 193 (337)
Q Consensus 122 g~~v~IiGpnGsGKTTLL~~l~gll~~~~--~~~i~~v~~~~ei~~~~~~~~~~~~~-~~~~~--~~S~g---~k~r~~i 193 (337)
+..++|.||+|+|||||++.+++.+.+.. +..+.+++...... +...+.. ..... ....+ ....-.+
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~-----~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l 119 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDT-----PYRVLADLLESLDVKVPFTGLSIAELYRRL 119 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCS-----HHHHHHHHTTTTSCCCCSSSCCHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCC-----HHHHHHHHHHHhCCCCCCCCCCHHHHHHHH
Confidence 67899999999999999999999886542 23444443211000 0000000 00000 00011 1111122
Q ss_pred HHHHhh--CCcEEEEcCCCCHHH------HHHHHHHH----hcCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEecC
Q 019702 194 EAVENH--MPEVIIVDEIGTEAE------AHACRSIA----ERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGD 260 (337)
Q Consensus 194 a~al~~--~P~vlilDEp~~~ld------~~~l~~~~----~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~g~ 260 (337)
..++.. .|.+|++||+....+ ...+.... ..+.++|+++|+.+....+..++...+ .++.+...+
T Consensus 120 ~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~~~~~~~~~r~--~~~~i~l~~ 196 (386)
T 2qby_A 120 VKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVDLLDPRVKSSL--SEEEIIFPP 196 (386)
T ss_dssp HHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGGGCTTHHHHTT--TTEEEEECC
T ss_pred HHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHhhhCHHHhccC--CCeeEEeCC
Confidence 233332 389999999976542 22233333 235789999999876555555554322 124455444
No 172
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=98.18 E-value=1.3e-06 Score=86.84 Aligned_cols=31 Identities=19% Similarity=0.188 Sum_probs=26.9
Q ss_pred hhhhcccCCCEEEEEcCCCCcHHHHHHHHHc
Q 019702 114 MVYDLLHYGKSILFVGRPGVGKTTVMREIAR 144 (337)
Q Consensus 114 ~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~g 144 (337)
.+.+.+.++..++|.|+|||||||+++.|+.
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~ 189 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMIL 189 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHH
Confidence 4556677788999999999999999999886
No 173
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.17 E-value=8.6e-07 Score=75.86 Aligned_cols=28 Identities=21% Similarity=0.487 Sum_probs=25.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHccccc
Q 019702 121 YGKSILFVGRPGVGKTTVMREIARVLSD 148 (337)
Q Consensus 121 ~g~~v~IiGpnGsGKTTLL~~l~gll~~ 148 (337)
+|++++|+||||||||||++.|++..++
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~~ 31 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHPD 31 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCc
Confidence 5889999999999999999999998753
No 174
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.15 E-value=1.2e-06 Score=74.50 Aligned_cols=36 Identities=28% Similarity=0.260 Sum_probs=31.1
Q ss_pred hhhhhcccCCCEEEEEcCCCCcHHHHHHHHHcccccc
Q 019702 113 DMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDE 149 (337)
Q Consensus 113 ~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~ 149 (337)
+.+++.+.+| +++|+|||||||||++++|.+++.+.
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~ 53 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGL 53 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCC
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 5666777777 99999999999999999999988654
No 175
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.15 E-value=6.2e-06 Score=75.11 Aligned_cols=73 Identities=30% Similarity=0.435 Sum_probs=46.7
Q ss_pred cCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEcCCcccccCCCCcccccccchhccCCCcchhHHHHHHHHHhh
Q 019702 120 HYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENH 199 (337)
Q Consensus 120 ~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~~~~ei~~~~~~~~~~~~~~~~~~~~S~g~k~r~~ia~al~~ 199 (337)
.++..++|.||+|+||||++++++..+. ..+..+... ++. ....+ ......+..+..+...
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~~----~~~~~v~~~-~~~------~~~~~--------~~~~~~~~~~~~~~~~ 109 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATETN----ATFIRVVGS-ELV------KKFIG--------EGASLVKDIFKLAKEK 109 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHTT----CEEEEEEGG-GGC------CCSTT--------HHHHHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhC----CCEEEEehH-HHH------Hhccc--------hHHHHHHHHHHHHHHc
Confidence 4567899999999999999999998763 233333221 110 00000 1112334456677778
Q ss_pred CCcEEEEcCCCC
Q 019702 200 MPEVIIVDEIGT 211 (337)
Q Consensus 200 ~P~vlilDEp~~ 211 (337)
.|.+|++||...
T Consensus 110 ~~~vl~iDEid~ 121 (285)
T 3h4m_A 110 APSIIFIDEIDA 121 (285)
T ss_dssp CSEEEEEETTHH
T ss_pred CCeEEEEECHHH
Confidence 999999999944
No 176
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=98.14 E-value=1.1e-05 Score=76.46 Aligned_cols=120 Identities=15% Similarity=0.082 Sum_probs=65.4
Q ss_pred cccCCCEEEEEcCCCCcHHHHHHHHHccc-ccc----CCCeEEEEcCCccccc--------CCCCccccc-ccchhccCC
Q 019702 118 LLHYGKSILFVGRPGVGKTTVMREIARVL-SDE----FQKRVVIVDTSNEIGG--------DGDIPHSAI-GTARRMQVP 183 (337)
Q Consensus 118 ~v~~g~~v~IiGpnGsGKTTLL~~l~gll-~~~----~~~~i~~v~~~~ei~~--------~~~~~~~~~-~~~~~~~~~ 183 (337)
-+++|+++.|.||+|||||||+..++... .+. .++.+.|++....+.. ..++....+ .........
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~~~~l~~l~~~~~~ 197 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAY 197 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCCHHHHHhceeEeecC
Confidence 46789999999999999999999998853 221 2567888865432110 001110000 000000111
Q ss_pred Ccchh-HHHHHHHHHh----hCCcEEEEcCCCCHHHH-------------------HHHHHHH-hcCCeEEEEEcCcch
Q 019702 184 EPSLQ-HKVMIEAVEN----HMPEVIIVDEIGTEAEA-------------------HACRSIA-ERGVMLIGTAHGEWL 237 (337)
Q Consensus 184 S~g~k-~r~~ia~al~----~~P~vlilDEp~~~ld~-------------------~~l~~~~-~~G~tvi~t~H~~~~ 237 (337)
+..+. +.+..+..+. .+|++|++|++++.... ..+..++ +.|.+||+++|....
T Consensus 198 ~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq~~~~ 276 (343)
T 1v5w_A 198 TSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMTAD 276 (343)
T ss_dssp STTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCCGGGCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC---
T ss_pred CHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEeeceec
Confidence 22222 1122222332 67999999999864321 1133333 569999999997653
No 177
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.13 E-value=1.3e-06 Score=75.56 Aligned_cols=34 Identities=35% Similarity=0.503 Sum_probs=27.8
Q ss_pred CEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEE
Q 019702 123 KSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIV 157 (337)
Q Consensus 123 ~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v 157 (337)
..++|.||+|+|||||+++++..+... +..+.++
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~-~~~~~~~ 88 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKR-NVSSLIV 88 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTT-TCCEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEE
Confidence 689999999999999999999988654 4455544
No 178
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=98.11 E-value=8e-06 Score=76.58 Aligned_cols=120 Identities=15% Similarity=0.104 Sum_probs=65.3
Q ss_pred cccCCCEEEEEcCCCCcHHHHHHHHHcccc-cc----CCCeEEEEcCCcccc--------cCCCCccccc-ccchhccCC
Q 019702 118 LLHYGKSILFVGRPGVGKTTVMREIARVLS-DE----FQKRVVIVDTSNEIG--------GDGDIPHSAI-GTARRMQVP 183 (337)
Q Consensus 118 ~v~~g~~v~IiGpnGsGKTTLL~~l~gll~-~~----~~~~i~~v~~~~ei~--------~~~~~~~~~~-~~~~~~~~~ 183 (337)
-+++|+++.|.||+|||||||+..++.... +. .++.+.|++....+. ...++....+ .........
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~~ 182 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAI 182 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEEEeCC
Confidence 478899999999999999999999987542 21 145777776543210 0001110000 000000111
Q ss_pred Ccch-hHHHHHHHHHh---hCCcEEEEcCCCCHHHH-------------------HHHHHHH-hcCCeEEEEEcCcch
Q 019702 184 EPSL-QHKVMIEAVEN---HMPEVIIVDEIGTEAEA-------------------HACRSIA-ERGVMLIGTAHGEWL 237 (337)
Q Consensus 184 S~g~-k~r~~ia~al~---~~P~vlilDEp~~~ld~-------------------~~l~~~~-~~G~tvi~t~H~~~~ 237 (337)
+..+ .+.+..+..+. .+|++||+|++++-... ..+..++ +.+.+||++.|-...
T Consensus 183 ~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq~~~~ 260 (324)
T 2z43_A 183 NTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQVMAR 260 (324)
T ss_dssp SHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTTTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC---
T ss_pred CHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCcccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEcceeec
Confidence 2111 12233333343 67999999999874321 1123333 559999999997653
No 179
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.11 E-value=5.7e-06 Score=72.66 Aligned_cols=89 Identities=15% Similarity=0.140 Sum_probs=54.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEcCCcccccCCCCcccccccchhccCCCcchhHHHHHHHHHhhC
Q 019702 121 YGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHM 200 (337)
Q Consensus 121 ~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~~~~ei~~~~~~~~~~~~~~~~~~~~S~g~k~r~~ia~al~~~ 200 (337)
.+..++|.||+|+||||+++.++..+... +..+.++.... +. . .+. ... ....+
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~-~~~~~~~~~~~-~~------~-~~~-----~~~------------~~~~~ 104 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANEL-ERRSFYIPLGI-HA------S-IST-----ALL------------EGLEQ 104 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHHT-TCCEEEEEGGG-GG------G-SCG-----GGG------------TTGGG
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEEEHHH-HH------H-HHH-----HHH------------HhccC
Confidence 57899999999999999999999987654 44555554311 10 0 000 000 01257
Q ss_pred CcEEEEcCCCCHHH----H----HHHHHHHhcCCe-EEEEEcCc
Q 019702 201 PEVIIVDEIGTEAE----A----HACRSIAERGVM-LIGTAHGE 235 (337)
Q Consensus 201 P~vlilDEp~~~ld----~----~~l~~~~~~G~t-vi~t~H~~ 235 (337)
|.+|++||+..... . ..+....+.+.. +|++++..
T Consensus 105 ~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~ 148 (242)
T 3bos_A 105 FDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASAS 148 (242)
T ss_dssp SSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSC
T ss_pred CCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCC
Confidence 89999999854211 2 233344556655 78877754
No 180
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.11 E-value=2.5e-06 Score=77.94 Aligned_cols=34 Identities=35% Similarity=0.545 Sum_probs=29.4
Q ss_pred hhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHcccc
Q 019702 112 IDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLS 147 (337)
Q Consensus 112 ~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~ 147 (337)
++.+++.+++| ++|+||||||||||+++|++.+.
T Consensus 65 l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~ 98 (278)
T 1iy2_A 65 FHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR 98 (278)
T ss_dssp HHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT
T ss_pred HHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC
Confidence 56666777777 99999999999999999999874
No 181
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=98.11 E-value=6.2e-06 Score=78.56 Aligned_cols=112 Identities=19% Similarity=0.277 Sum_probs=64.1
Q ss_pred ccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEcCCccccc----CCCCcccccccchhccCCCcchhHHHHHH
Q 019702 119 LHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGG----DGDIPHSAIGTARRMQVPEPSLQHKVMIE 194 (337)
Q Consensus 119 v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~~~~ei~~----~~~~~~~~~~~~~~~~~~S~g~k~r~~ia 194 (337)
+++|.++.|.|++|||||||...++...... +..+.|++....... ..++....+.. .. .+.. .+...++
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~~~~~~-g~~vlyid~E~s~~~~~a~~~g~~~~~l~i---~~-~~~~-e~~~~~~ 133 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIAAAQRE-GKTCAFIDAEHALDPIYARKLGVDIDNLLC---SQ-PDTG-EQALEIC 133 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHT-TCCEEEEESSCCCCHHHHHHTTCCGGGCEE---EC-CSSH-HHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEeCCCCccHHHHHHcCCChhheee---eC-CCCH-HHHHHHH
Confidence 6789999999999999999999888766543 567888765321100 00111011100 00 1111 2223344
Q ss_pred HHH--hhCCcEEEEcCCCCHH----------H----------HHHHHHH----HhcCCeEEEEEcCcc
Q 019702 195 AVE--NHMPEVIIVDEIGTEA----------E----------AHACRSI----AERGVMLIGTAHGEW 236 (337)
Q Consensus 195 ~al--~~~P~vlilDEp~~~l----------d----------~~~l~~~----~~~G~tvi~t~H~~~ 236 (337)
..+ ...|++||+|.++.-. | .+.+..+ .+.+++||+++|-..
T Consensus 134 ~~l~~~~~~~lVVIDsl~~l~~~~e~~~~~g~~~~~~q~r~~~~~l~~L~~~a~~~~~~VI~~nq~~~ 201 (356)
T 1u94_A 134 DALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRM 201 (356)
T ss_dssp HHHHHHTCCSEEEEECGGGCCCHHHHTTC------CHHHHHHHHHHHHHHHHHHHHTCEEEEEEC---
T ss_pred HHHHhccCCCEEEEcCHHHhcchhhhccccccchhHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Confidence 433 4689999999996521 1 1122222 466999999999754
No 182
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.10 E-value=1.2e-06 Score=75.95 Aligned_cols=37 Identities=30% Similarity=0.341 Sum_probs=25.5
Q ss_pred chhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHcccc
Q 019702 111 HIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLS 147 (337)
Q Consensus 111 ~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~ 147 (337)
.++++++.+.+|.+++|+||+||||||+.+.|++.+.
T Consensus 14 ~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 14 GTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp ----------CCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 4889999999999999999999999999999998773
No 183
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=98.10 E-value=1.9e-05 Score=70.92 Aligned_cols=68 Identities=28% Similarity=0.413 Sum_probs=43.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEcCCcccccCCCCcccccccchhccCCCcchhHHHHHHHHHhhCCc
Q 019702 123 KSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPE 202 (337)
Q Consensus 123 ~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~~~~ei~~~~~~~~~~~~~~~~~~~~S~g~k~r~~ia~al~~~P~ 202 (337)
..++|+||||+||||++++|++.+.. .+..++.. .+. .... .....+.+..+..+....|.
T Consensus 46 ~~vll~G~~GtGKT~la~~la~~~~~----~~~~i~~~-~~~------~~~~--------~~~~~~~~~~~~~a~~~~~~ 106 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAGEAKV----PFFTISGS-DFV------EMFV--------GVGASRVRDMFEQAKKAAPC 106 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTC----CEEEECSC-SST------TSCC--------CCCHHHHHHHHHHHHTTCSE
T ss_pred CeEEEECcCCCCHHHHHHHHHHHcCC----CEEEEeHH-HHH------HHhh--------hhhHHHHHHHHHHHHHcCCe
Confidence 35999999999999999999998642 23444321 111 1000 11122334455666667899
Q ss_pred EEEEcCC
Q 019702 203 VIIVDEI 209 (337)
Q Consensus 203 vlilDEp 209 (337)
++++||.
T Consensus 107 il~iDei 113 (257)
T 1lv7_A 107 IIFIDEI 113 (257)
T ss_dssp EEEETTH
T ss_pred eehhhhh
Confidence 9999997
No 184
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=98.09 E-value=1.1e-05 Score=69.48 Aligned_cols=108 Identities=17% Similarity=0.178 Sum_probs=55.4
Q ss_pred CCCEEEEEcCCCCcHHHHH-HHHHccccccCCCeEEEEcCC--cccccCCCCcccccccchhccCCCcchhHHHHHHHHH
Q 019702 121 YGKSILFVGRPGVGKTTVM-REIARVLSDEFQKRVVIVDTS--NEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVE 197 (337)
Q Consensus 121 ~g~~v~IiGpnGsGKTTLL-~~l~gll~~~~~~~i~~v~~~--~ei~~~~~~~~~~~~~~~~~~~~S~g~k~r~~ia~al 197 (337)
+|.++.+.||+||||||++ +.+..+... +.++.++... ...+......+.... .......+... .+. .+
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~~~~--g~~v~~~~~~~d~r~~~~~i~s~~g~~-~~~~~~~~~~~----~~~-~~ 73 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIYKLG--KKKVAVFKPKIDSRYHSTMIVSHSGNG-VEAHVIERPEE----MRK-YI 73 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHHT--TCEEEEEEEC-----CCCEECC----C-EECEEESSGGG----GGG-GC
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEeeccccccCcccEEecCCCc-eeeEEECCHHH----HHH-Hh
Confidence 4789999999999999997 444444332 4555544211 011000000000000 00000000000 000 00
Q ss_pred hhCCcEEEEcCCCCH--HHHHHHHHHHhcCCeEEEEEcCcc
Q 019702 198 NHMPEVIIVDEIGTE--AEAHACRSIAERGVMLIGTAHGEW 236 (337)
Q Consensus 198 ~~~P~vlilDEp~~~--ld~~~l~~~~~~G~tvi~t~H~~~ 236 (337)
..++++|++||.-.- .-.+.+..+++.|..|+++.++.+
T Consensus 74 ~~~~dvviIDE~Q~~~~~~~~~l~~l~~~~~~Vi~~Gl~~~ 114 (184)
T 2orw_A 74 EEDTRGVFIDEVQFFNPSLFEVVKDLLDRGIDVFCAGLDLT 114 (184)
T ss_dssp CTTEEEEEECCGGGSCTTHHHHHHHHHHTTCEEEEEEESBC
T ss_pred cCCCCEEEEECcccCCHHHHHHHHHHHHCCCCEEEEeeccc
Confidence 136899999998432 224566667777999999999776
No 185
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=98.07 E-value=3.2e-06 Score=77.90 Aligned_cols=35 Identities=37% Similarity=0.661 Sum_probs=28.2
Q ss_pred CEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEc
Q 019702 123 KSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD 158 (337)
Q Consensus 123 ~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~ 158 (337)
..++|.||||+||||++++|++.+... ...+.+++
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~-~~~~~~~~ 82 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDT-EEAMIRID 82 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSC-GGGEEEEE
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCC-CcceEEee
Confidence 589999999999999999999998654 34455443
No 186
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.06 E-value=1.7e-06 Score=75.13 Aligned_cols=28 Identities=25% Similarity=0.364 Sum_probs=24.9
Q ss_pred ccCCCEEEEEcCCCCcHHHHHHHHHccc
Q 019702 119 LHYGKSILFVGRPGVGKTTVMREIARVL 146 (337)
Q Consensus 119 v~~g~~v~IiGpnGsGKTTLL~~l~gll 146 (337)
..+|++++|+|||||||||+++.|++.+
T Consensus 26 ~~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 26 GEPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 4579999999999999999999999987
No 187
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.05 E-value=2.3e-06 Score=75.00 Aligned_cols=29 Identities=31% Similarity=0.412 Sum_probs=27.0
Q ss_pred cCCCEEEEEcCCCCcHHHHHHHHHccccc
Q 019702 120 HYGKSILFVGRPGVGKTTVMREIARVLSD 148 (337)
Q Consensus 120 ~~g~~v~IiGpnGsGKTTLL~~l~gll~~ 148 (337)
++|++++|+||||||||||++.|++.+++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 57999999999999999999999999865
No 188
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.04 E-value=1.8e-06 Score=80.29 Aligned_cols=36 Identities=28% Similarity=0.339 Sum_probs=29.0
Q ss_pred ccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEE
Q 019702 119 LHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVV 155 (337)
Q Consensus 119 v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~ 155 (337)
+..|++++|+||||||||||+++|+|+..|+ .+.+.
T Consensus 166 ~l~geiv~l~G~sG~GKSTll~~l~g~~~~~-~G~i~ 201 (301)
T 1u0l_A 166 YLKGKISTMAGLSGVGKSSLLNAINPGLKLR-VSEVS 201 (301)
T ss_dssp HHSSSEEEEECSTTSSHHHHHHHHSTTCCCC------
T ss_pred HhcCCeEEEECCCCCcHHHHHHHhccccccc-cccee
Confidence 4579999999999999999999999999887 34443
No 189
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=98.04 E-value=1.6e-05 Score=74.28 Aligned_cols=118 Identities=17% Similarity=0.124 Sum_probs=75.8
Q ss_pred hhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEcCC--cc-ccc-----CCCCcccccccchhccC-
Q 019702 112 IDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTS--NE-IGG-----DGDIPHSAIGTARRMQV- 182 (337)
Q Consensus 112 ~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~~~--~e-i~~-----~~~~~~~~~~~~~~~~~- 182 (337)
++.+..-+.+|++++|.|+||+|||||+..++...... +..+.++.-. .+ +.. ...++...+ +...
T Consensus 58 LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~-g~~vl~~slE~s~~~l~~R~~~~~~~i~~~~l----~~~~~ 132 (315)
T 3bh0_A 58 LDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDN-DDVVNLHSLEMGKKENIKRLIVTAGSINAQKI----KAARR 132 (315)
T ss_dssp HHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTT-TCEEEEEESSSCHHHHHHHHHHHHTTCCHHHH----HSCHH
T ss_pred HHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHc-CCeEEEEECCCCHHHHHHHHHHHHcCCCHHHH----hcCCC
Confidence 56555558899999999999999999999888655432 3566666422 11 100 001111111 1122
Q ss_pred -CCcchhHHHHHHHHHhhCCcEEEEcCCCCHHH--HHHHHHHHh-cCCe--EEEEEcC
Q 019702 183 -PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAE--AHACRSIAE-RGVM--LIGTAHG 234 (337)
Q Consensus 183 -~S~g~k~r~~ia~al~~~P~vlilDEp~~~ld--~~~l~~~~~-~G~t--vi~t~H~ 234 (337)
++.++++++..|.....++.+.+.|+|....+ ...+..+.+ .|.. +|++-|-
T Consensus 133 ~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~~~~i~~~i~~l~~~~~~~~~lVVID~l 190 (315)
T 3bh0_A 133 DFASEDWGKLSMAIGEISNSNINIFDKAGQSVNYIWSKTRQTKRKNPGKRVIVMIDYL 190 (315)
T ss_dssp HHCSSCHHHHHHHHHHHHTSCEEEECCSCCBHHHHHHHHHHHHHTSSSCCEEEEEECG
T ss_pred CCCHHHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCeEEEEeCc
Confidence 67888899988888888899999999965443 234555544 3777 7777653
No 190
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=98.03 E-value=6.2e-06 Score=86.67 Aligned_cols=101 Identities=22% Similarity=0.344 Sum_probs=61.6
Q ss_pred ccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEcCCcccccCCCCcccccccchhccCCCcchhHHHHHHHHHh
Q 019702 119 LHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVEN 198 (337)
Q Consensus 119 v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~~~~ei~~~~~~~~~~~~~~~~~~~~S~g~k~r~~ia~al~ 198 (337)
+.+++.++|+||||||||||+++|++.+.. ..+.+.. .++.. ... .....+.+..+..+..
T Consensus 235 i~~~~~vLL~Gp~GtGKTtLarala~~l~~----~~i~v~~-~~l~~------~~~--------g~~~~~l~~vf~~a~~ 295 (806)
T 1ypw_A 235 VKPPRGILLYGPPGTGKTLIARAVANETGA----FFFLING-PEIMS------KLA--------GESESNLRKAFEEAEK 295 (806)
T ss_dssp CCCCCEEEECSCTTSSHHHHHHHHHHTTTC----EEEEEEH-HHHSS------SST--------THHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEECcCCCCHHHHHHHHHHHcCC----cEEEEEc-hHhhh------hhh--------hhHHHHHHHHHHHHHh
Confidence 567889999999999999999999998743 2333321 11100 000 0112233456677778
Q ss_pred hCCcEEEEcCCCC----------HHHH---HHHHHHH-----hcCCeEEEEEcCcchh
Q 019702 199 HMPEVIIVDEIGT----------EAEA---HACRSIA-----ERGVMLIGTAHGEWLE 238 (337)
Q Consensus 199 ~~P~vlilDEp~~----------~ld~---~~l~~~~-----~~G~tvi~t~H~~~~~ 238 (337)
..|.++++||+.. ..+. ..+..+. ..+..+|+++|..+..
T Consensus 296 ~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~vI~atn~~~~l 353 (806)
T 1ypw_A 296 NAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSI 353 (806)
T ss_dssp HCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCEEEEECSCTTTS
T ss_pred cCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccEEEecccCCchhc
Confidence 8999999999932 1221 2222222 1246788888886543
No 191
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=98.03 E-value=1.8e-06 Score=86.80 Aligned_cols=37 Identities=32% Similarity=0.585 Sum_probs=31.4
Q ss_pred hhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHcccccc
Q 019702 112 IDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDE 149 (337)
Q Consensus 112 ~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~ 149 (337)
+..+++.+ +|..++|+||||+|||||+++|++.+.+.
T Consensus 99 l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~ 135 (543)
T 3m6a_A 99 VQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRK 135 (543)
T ss_dssp HHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCE
T ss_pred HHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCC
Confidence 45555656 78999999999999999999999998653
No 192
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.02 E-value=2.5e-06 Score=79.54 Aligned_cols=120 Identities=12% Similarity=0.174 Sum_probs=64.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEcCCcccccCCCCcccccccchhccCCCcchhHHHHHHHHHhhCC
Q 019702 122 GKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMP 201 (337)
Q Consensus 122 g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~~~~ei~~~~~~~~~~~~~~~~~~~~S~g~k~r~~ia~al~~~P 201 (337)
+..++|.||+|+|||||+++++..+... +..+.++.... + .......... +.. -.+.. ...+|
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~~-~~~~~~i~~~~-~------~~~~~~~~~~------~~~--~~~~~-~~~~~ 99 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKKR-GYRVIYSSADD-F------AQAMVEHLKK------GTI--NEFRN-MYKSV 99 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHHT-TCCEEEEEHHH-H------HHHHHHHHHH------TCH--HHHHH-HHHTC
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHC-CCEEEEEEHHH-H------HHHHHHHHHc------CcH--HHHHH-HhcCC
Confidence 4589999999999999999999988654 45565554211 1 0000000000 000 01111 23469
Q ss_pred cEEEEcCCCCHH----HH----HHHHHHHhcCCeEEEEEcCc-chhHHhhchHHHHHhcCceEEEec
Q 019702 202 EVIIVDEIGTEA----EA----HACRSIAERGVMLIGTAHGE-WLENIIKNPILSDLIGGVDTVTLG 259 (337)
Q Consensus 202 ~vlilDEp~~~l----d~----~~l~~~~~~G~tvi~t~H~~-~~~~~~~d~v~~~ll~~G~iv~~g 259 (337)
++|++||+..-. .. ..+....+.|..+|++++.. .....+..++... +..|.++...
T Consensus 100 ~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR-~~~~~~i~l~ 165 (324)
T 1l8q_A 100 DLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSR-FEGGILVEIE 165 (324)
T ss_dssp SEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHH-HHTSEEEECC
T ss_pred CEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhc-ccCceEEEeC
Confidence 999999985421 11 23444456677777777643 2222334444432 2334554443
No 193
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.99 E-value=3.5e-06 Score=73.31 Aligned_cols=38 Identities=18% Similarity=0.212 Sum_probs=32.2
Q ss_pred ccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEE
Q 019702 119 LHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIV 157 (337)
Q Consensus 119 v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v 157 (337)
..+|.+++|+|+|||||||+++.|++++.+. ++.+.+.
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~-~~~v~~~ 56 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQ-GISVCVF 56 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhc-CCeEEEe
Confidence 4578899999999999999999999999765 4556555
No 194
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.99 E-value=3.1e-06 Score=75.88 Aligned_cols=29 Identities=31% Similarity=0.359 Sum_probs=26.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHH---cccccc
Q 019702 121 YGKSILFVGRPGVGKTTVMREIA---RVLSDE 149 (337)
Q Consensus 121 ~g~~v~IiGpnGsGKTTLL~~l~---gll~~~ 149 (337)
++++++|+|||||||||+++.|+ |+..++
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~ 57 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLS 57 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEec
Confidence 46899999999999999999999 987664
No 195
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.97 E-value=3.6e-05 Score=71.96 Aligned_cols=113 Identities=12% Similarity=0.102 Sum_probs=63.7
Q ss_pred ccCCCEEEEEcCCCCcHHHHHHHHH-ccccccCCCeEEEEcCCccccc----CCCCcccccccchhccCCCcchhHHHHH
Q 019702 119 LHYGKSILFVGRPGVGKTTVMREIA-RVLSDEFQKRVVIVDTSNEIGG----DGDIPHSAIGTARRMQVPEPSLQHKVMI 193 (337)
Q Consensus 119 v~~g~~v~IiGpnGsGKTTLL~~l~-gll~~~~~~~i~~v~~~~ei~~----~~~~~~~~~~~~~~~~~~S~g~k~r~~i 193 (337)
+.+| ++.|.||+|||||||+-.++ .......++.+.|++....+.. ..++....+... .....++..+.+
T Consensus 26 l~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~----~~~~~E~~~l~i 100 (333)
T 3io5_A 26 MQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHT----PVQSLEQLRIDM 100 (333)
T ss_dssp BCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEE----ECSBHHHHHHHH
T ss_pred CcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEE----cCCCHHHHHHHH
Confidence 6678 89999999999999955544 4333212578888876443311 011111111100 112233432444
Q ss_pred HHHH----hhCCcEEEEcCCCCHH------------------HH----HHHHH----HHhcCCeEEEEEcCcc
Q 019702 194 EAVE----NHMPEVIIVDEIGTEA------------------EA----HACRS----IAERGVMLIGTAHGEW 236 (337)
Q Consensus 194 a~al----~~~P~vlilDEp~~~l------------------d~----~~l~~----~~~~G~tvi~t~H~~~ 236 (337)
+..+ ..+|+++++|-+++-. .. ..+.. +.+.|+++|+|.|-..
T Consensus 101 ~~~l~~i~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~~~ak~~~i~vi~tNQV~k 173 (333)
T 3io5_A 101 VNQLDAIERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIPCIAINHTYE 173 (333)
T ss_dssp HHHHHTCCTTCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHHHHHHHHTTCEEEEEEEC--
T ss_pred HHHHHHhhccCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEECCeee
Confidence 4444 3579999999986521 11 11222 3467999999999876
No 196
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.97 E-value=3.2e-05 Score=69.18 Aligned_cols=72 Identities=21% Similarity=0.365 Sum_probs=44.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEcCCcccccCCCCcccccccchhccCCCcchhHHHHHHHHHhhC
Q 019702 121 YGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHM 200 (337)
Q Consensus 121 ~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~~~~ei~~~~~~~~~~~~~~~~~~~~S~g~k~r~~ia~al~~~ 200 (337)
....++|.||+|+||||++++++..+. ..+..+.... +.. . .. .....+.+-.+..+....
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~~~----~~~~~~~~~~-~~~------~-~~-------~~~~~~~~~~~~~a~~~~ 98 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATEAQ----VPFLAMAGAE-FVE------V-IG-------GLGAARVRSLFKEARARA 98 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHHT----CCEEEEETTT-TSS------S-ST-------THHHHHHHHHHHHHHHTC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhC----CCEEEechHH-HHh------h-cc-------ChhHHHHHHHHHHHHhcC
Confidence 345789999999999999999998763 2333333221 100 0 00 001122334566666778
Q ss_pred CcEEEEcCCCC
Q 019702 201 PEVIIVDEIGT 211 (337)
Q Consensus 201 P~vlilDEp~~ 211 (337)
|.+|++||.-.
T Consensus 99 ~~vl~iDeid~ 109 (262)
T 2qz4_A 99 PCIVYIDEIDA 109 (262)
T ss_dssp SEEEEEECC--
T ss_pred CeEEEEeCcch
Confidence 99999999965
No 197
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.94 E-value=5.9e-06 Score=77.63 Aligned_cols=58 Identities=22% Similarity=0.170 Sum_probs=39.8
Q ss_pred EEEEECCccccchhhhhhcccCCC------EEEEEcCCCCcHHHHHHHHHcccccc-CCCeEEEEcC
Q 019702 100 LTCRVGRAVSGHIDMVYDLLHYGK------SILFVGRPGVGKTTVMREIARVLSDE-FQKRVVIVDT 159 (337)
Q Consensus 100 l~~r~~~~~~~~~~~l~~~v~~g~------~v~IiGpnGsGKTTLL~~l~gll~~~-~~~~i~~v~~ 159 (337)
+++.|+.... +..++..+..+. +++|+||||||||||++.|.+++... .++.+.++..
T Consensus 66 l~~~~~~~~~--l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~ 130 (321)
T 3tqc_A 66 LSFYVTARQT--LQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITT 130 (321)
T ss_dssp HHHHHHHHHH--HHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEG
T ss_pred HHHhhcchHH--HHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEee
Confidence 4444444333 666666655443 89999999999999999999998732 1455665543
No 198
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.94 E-value=6.9e-07 Score=84.16 Aligned_cols=46 Identities=30% Similarity=0.392 Sum_probs=37.3
Q ss_pred eEEEEECCccccchhhhhhcccCC-------CEEEEEcCCCCcHHHHHHHHHccc
Q 019702 99 GLTCRVGRAVSGHIDMVYDLLHYG-------KSILFVGRPGVGKTTVMREIARVL 146 (337)
Q Consensus 99 ~l~~r~~~~~~~~~~~l~~~v~~g-------~~v~IiGpnGsGKTTLL~~l~gll 146 (337)
+++..|+.... ++.+++.+.+| +.++|+||||+|||||+++|++.+
T Consensus 23 ~l~~~~g~~~~--~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 23 SLDEFIGQENV--KKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp SGGGCCSCHHH--HHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHH
T ss_pred cHHHccCcHHH--HHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 45555555443 78888888765 789999999999999999999987
No 199
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.94 E-value=5.3e-05 Score=70.91 Aligned_cols=73 Identities=23% Similarity=0.435 Sum_probs=47.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEcCCcccccCCCCcccccccchhccCCCcchhHHHHHHHHHhhC
Q 019702 121 YGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHM 200 (337)
Q Consensus 121 ~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~~~~ei~~~~~~~~~~~~~~~~~~~~S~g~k~r~~ia~al~~~ 200 (337)
+...++|.||+|+|||||+++++..+. +..+..+... ++.. ...+ ......+..+..+....
T Consensus 44 ~~~~iLL~GppGtGKT~la~ala~~~~---~~~~~~i~~~-~l~~------~~~g--------~~~~~~~~lf~~a~~~~ 105 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYLAKAVATEAN---NSTFFSISSS-DLVS------KWLG--------ESEKLVKNLFQLARENK 105 (322)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTT---SCEEEEEECC-SSCC------SSCC--------SCHHHHHHHHHHHHHTS
T ss_pred CCceEEEECCCCccHHHHHHHHHHHcC---CCcEEEEEhH-HHHh------hhhh--------HHHHHHHHHHHHHHhcC
Confidence 446899999999999999999998762 2344444332 1110 0000 11223344566667789
Q ss_pred CcEEEEcCCCC
Q 019702 201 PEVIIVDEIGT 211 (337)
Q Consensus 201 P~vlilDEp~~ 211 (337)
|.+|++||..+
T Consensus 106 ~~vl~iDEid~ 116 (322)
T 1xwi_A 106 PSIIFIDEIDS 116 (322)
T ss_dssp SEEEEEETTTG
T ss_pred CcEEEeecHHH
Confidence 99999999954
No 200
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.94 E-value=3.7e-06 Score=70.73 Aligned_cols=28 Identities=36% Similarity=0.573 Sum_probs=25.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHccccc
Q 019702 121 YGKSILFVGRPGVGKTTVMREIARVLSD 148 (337)
Q Consensus 121 ~g~~v~IiGpnGsGKTTLL~~l~gll~~ 148 (337)
.+.+++|+|||||||||+++.|++.+.+
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~ 30 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM 30 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTC
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3678999999999999999999998754
No 201
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=97.93 E-value=3.2e-05 Score=67.21 Aligned_cols=111 Identities=17% Similarity=0.159 Sum_probs=60.4
Q ss_pred cCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEcC--CcccccCCCCcccccccchhccCCCcchhHHHHHHHHH
Q 019702 120 HYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDT--SNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVE 197 (337)
Q Consensus 120 ~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~~--~~ei~~~~~~~~~~~~~~~~~~~~S~g~k~r~~ia~al 197 (337)
.+|.+..++||.||||||.+.-++.-.... +.++.++.. ....+......+..+. .....+.+. . .+...+
T Consensus 6 ~~g~i~v~~G~mgsGKTT~ll~~a~r~~~~-g~kV~v~k~~~d~r~~~~~i~s~~g~~-~~a~~~~~~-~----~i~~~~ 78 (191)
T 1xx6_A 6 DHGWVEVIVGPMYSGKSEELIRRIRRAKIA-KQKIQVFKPEIDNRYSKEDVVSHMGEK-EQAVAIKNS-R----EILKYF 78 (191)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHHHT-TCCEEEEEEC-------CEEECTTSCE-EECEEESSS-T----HHHHHC
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHC-CCEEEEEEeccCccchHHHHHhhcCCc-eeeEeeCCH-H----HHHHHH
Confidence 457899999999999998887666655433 556665521 0111100000000000 000011111 1 111111
Q ss_pred hhCCcEEEEcCC--CCHHHHHHHHHHHhcCCeEEEEEcCcch
Q 019702 198 NHMPEVIIVDEI--GTEAEAHACRSIAERGVMLIGTAHGEWL 237 (337)
Q Consensus 198 ~~~P~vlilDEp--~~~ld~~~l~~~~~~G~tvi~t~H~~~~ 237 (337)
..+.|+|++||. .+...++.+..+...|+.||++.++.++
T Consensus 79 ~~~~dvViIDEaqfl~~~~v~~l~~l~~~~~~Vi~~Gl~~df 120 (191)
T 1xx6_A 79 EEDTEVIAIDEVQFFDDEIVEIVNKIAESGRRVICAGLDMDF 120 (191)
T ss_dssp CTTCSEEEECSGGGSCTHHHHHHHHHHHTTCEEEEEECSBCT
T ss_pred hccCCEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEeccccc
Confidence 235799999997 2233467777877779999999998753
No 202
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.92 E-value=1.7e-05 Score=77.27 Aligned_cols=100 Identities=21% Similarity=0.335 Sum_probs=62.1
Q ss_pred cCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEcCCcccccCCCCcccccccchhccCCCcchhHHHHHHHHHhh
Q 019702 120 HYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENH 199 (337)
Q Consensus 120 ~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~~~~ei~~~~~~~~~~~~~~~~~~~~S~g~k~r~~ia~al~~ 199 (337)
.+...+++.||||+|||+|.+++++.+. ..+..+... ++. ...++ .....-|-.+..|..+
T Consensus 204 ~~prGiLL~GPPGtGKT~lakAiA~~~~----~~~~~v~~~-~l~------~~~~G--------e~e~~ir~lF~~A~~~ 264 (428)
T 4b4t_K 204 DPPRGVLLYGPPGTGKTMLVKAVANSTK----AAFIRVNGS-EFV------HKYLG--------EGPRMVRDVFRLAREN 264 (428)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHHHHT----CEEEEEEGG-GTC------CSSCS--------HHHHHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhC----CCeEEEecc-hhh------ccccc--------hhHHHHHHHHHHHHHc
Confidence 3446799999999999999999999764 344444321 110 00111 1122345577888889
Q ss_pred CCcEEEEcCCCCHH----------H-------HHHHHHHH----hcCCeEEEEEcCcchh
Q 019702 200 MPEVIIVDEIGTEA----------E-------AHACRSIA----ERGVMLIGTAHGEWLE 238 (337)
Q Consensus 200 ~P~vlilDEp~~~l----------d-------~~~l~~~~----~~G~tvi~t~H~~~~~ 238 (337)
.|.||++||.-+-. + ...+..+- ..|+.||+||+..+..
T Consensus 265 aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~~~L 324 (428)
T 4b4t_K 265 APSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRADTL 324 (428)
T ss_dssp CSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEESCSSSC
T ss_pred CCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhc
Confidence 99999999984311 1 12222221 2367889999877644
No 203
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=97.91 E-value=3.1e-07 Score=82.19 Aligned_cols=32 Identities=25% Similarity=0.312 Sum_probs=27.8
Q ss_pred cccCCCEEEEEcCCCCcHHHHHHHHHccccccC
Q 019702 118 LLHYGKSILFVGRPGVGKTTVMREIARVLSDEF 150 (337)
Q Consensus 118 ~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~ 150 (337)
.+.+ ++++|+|||||||||||++|+|++.|+.
T Consensus 24 ~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~ 55 (227)
T 1qhl_A 24 DLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDL 55 (227)
T ss_dssp CHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCT
T ss_pred EEcC-cEEEEECCCCCCHHHHHHHHhcccccCC
Confidence 3444 7889999999999999999999998874
No 204
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.91 E-value=4.9e-06 Score=79.86 Aligned_cols=36 Identities=19% Similarity=0.220 Sum_probs=33.1
Q ss_pred chhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccc
Q 019702 111 HIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVL 146 (337)
Q Consensus 111 ~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll 146 (337)
+++.+++.+++|++++|+||||||||||+++|++..
T Consensus 158 ~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 158 FLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp HHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 477888899999999999999999999999999964
No 205
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.91 E-value=2.1e-06 Score=80.19 Aligned_cols=33 Identities=27% Similarity=0.431 Sum_probs=25.7
Q ss_pred hcccCCCEEEEEcCCCCcHHHHHHHHHcccccc
Q 019702 117 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDE 149 (337)
Q Consensus 117 ~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~ 149 (337)
+.+.+|++++|+||||||||||+++|+|+..+.
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~ 200 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLR 200 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC-----
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhccccccc
Confidence 345689999999999999999999999998876
No 206
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.90 E-value=5.7e-06 Score=73.58 Aligned_cols=37 Identities=19% Similarity=0.298 Sum_probs=30.4
Q ss_pred cccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEcC
Q 019702 118 LLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDT 159 (337)
Q Consensus 118 ~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~~ 159 (337)
..++|++++|.|+|||||||+++.|+++ ++.+.+..+
T Consensus 16 ~~~~g~~i~i~G~~GsGKSTl~~~L~~~-----~g~v~~~~~ 52 (230)
T 2vp4_A 16 EGTQPFTVLIEGNIGSGKTTYLNHFEKY-----KNDICLLTE 52 (230)
T ss_dssp TTCCCEEEEEECSTTSCHHHHHHTTGGG-----TTTEEEECC
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhc-----cCCeEEEec
Confidence 4578999999999999999999999997 344555544
No 207
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.90 E-value=4.7e-06 Score=70.40 Aligned_cols=27 Identities=33% Similarity=0.525 Sum_probs=24.8
Q ss_pred cCCCEEEEEcCCCCcHHHHHHHHHccc
Q 019702 120 HYGKSILFVGRPGVGKTTVMREIARVL 146 (337)
Q Consensus 120 ~~g~~v~IiGpnGsGKTTLL~~l~gll 146 (337)
.+|++++|+|||||||||+++.|++.+
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 468899999999999999999999875
No 208
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.89 E-value=6e-06 Score=74.60 Aligned_cols=33 Identities=21% Similarity=0.245 Sum_probs=27.8
Q ss_pred hcccCCCEEEEEcCCCCcHHHHHHHHH---cccccc
Q 019702 117 DLLHYGKSILFVGRPGVGKTTVMREIA---RVLSDE 149 (337)
Q Consensus 117 ~~v~~g~~v~IiGpnGsGKTTLL~~l~---gll~~~ 149 (337)
....+|++++|+|||||||||+++.|+ |+..++
T Consensus 22 ~m~~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d 57 (252)
T 4e22_A 22 HMTAIAPVITVDGPSGAGKGTLCKALAESLNWRLLD 57 (252)
T ss_dssp -CTTTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEE
T ss_pred hcCCCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCC
Confidence 334679999999999999999999999 776554
No 209
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.88 E-value=3.2e-05 Score=75.15 Aligned_cols=119 Identities=18% Similarity=0.295 Sum_probs=72.3
Q ss_pred ccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEcCCcccccCCCCcccccccchhccCCCcchhHHHHHHHHHh
Q 019702 119 LHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVEN 198 (337)
Q Consensus 119 v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~~~~ei~~~~~~~~~~~~~~~~~~~~S~g~k~r~~ia~al~ 198 (337)
+.+...+++.||||+|||+|.+++++.... .+..+.. .++. ...++ .....-|..+..|..
T Consensus 213 i~~prGvLLyGPPGTGKTlLAkAiA~e~~~----~fi~v~~-s~l~------sk~vG--------esek~ir~lF~~Ar~ 273 (437)
T 4b4t_I 213 IKPPKGVILYGAPGTGKTLLAKAVANQTSA----TFLRIVG-SELI------QKYLG--------DGPRLCRQIFKVAGE 273 (437)
T ss_dssp CCCCSEEEEESSTTTTHHHHHHHHHHHHTC----EEEEEES-GGGC------CSSSS--------HHHHHHHHHHHHHHH
T ss_pred CCCCCCCceECCCCchHHHHHHHHHHHhCC----CEEEEEH-HHhh------hccCc--------hHHHHHHHHHHHHHh
Confidence 344567999999999999999999997643 3444432 2221 01111 112344567888889
Q ss_pred hCCcEEEEcCCCCHH----------H-------HHHHHHHH----hcCCeEEEEEcCcchhHHhhchHHHHHhcCce---
Q 019702 199 HMPEVIIVDEIGTEA----------E-------AHACRSIA----ERGVMLIGTAHGEWLENIIKNPILSDLIGGVD--- 254 (337)
Q Consensus 199 ~~P~vlilDEp~~~l----------d-------~~~l~~~~----~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~--- 254 (337)
..|.||++||.-+-. + ...+..+- ..++.||++|...+..+ +. ++.-|+
T Consensus 274 ~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd~LD----pA---LlRpGRfD~ 346 (437)
T 4b4t_I 274 NAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLD----PA---LIRPGRIDR 346 (437)
T ss_dssp TCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCSTTCC----TT---SSCTTTEEE
T ss_pred cCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCChhhcC----HH---HhcCCceeE
Confidence 999999999985410 0 12222221 23567889998777443 33 344344
Q ss_pred EEEecCHHH
Q 019702 255 TVTLGDEEA 263 (337)
Q Consensus 255 iv~~g~~~~ 263 (337)
.+..+-|+.
T Consensus 347 ~I~v~lPd~ 355 (437)
T 4b4t_I 347 KILFENPDL 355 (437)
T ss_dssp EECCCCCCH
T ss_pred EEEcCCcCH
Confidence 466777754
No 210
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.87 E-value=5.8e-06 Score=83.18 Aligned_cols=42 Identities=29% Similarity=0.427 Sum_probs=35.1
Q ss_pred cccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEcC
Q 019702 118 LLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDT 159 (337)
Q Consensus 118 ~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~~ 159 (337)
.+.+|++++|+|+||||||||+++|++.+.+..++.+.+++.
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDg 406 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDG 406 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESS
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECC
Confidence 467899999999999999999999999998864445665654
No 211
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.84 E-value=9.2e-06 Score=75.54 Aligned_cols=30 Identities=20% Similarity=0.330 Sum_probs=27.2
Q ss_pred ccCCCEEEEEcCCCCcHHHHHHHHHcccccc
Q 019702 119 LHYGKSILFVGRPGVGKTTVMREIARVLSDE 149 (337)
Q Consensus 119 v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~ 149 (337)
+..|++++|+||||||||||+++|+ ++.|.
T Consensus 162 ~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~ 191 (302)
T 2yv5_A 162 YLEGFICILAGPSGVGKSSILSRLT-GEELR 191 (302)
T ss_dssp HTTTCEEEEECSTTSSHHHHHHHHH-SCCCC
T ss_pred hccCcEEEEECCCCCCHHHHHHHHH-HhhCc
Confidence 4469999999999999999999999 88776
No 212
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=97.84 E-value=9.2e-06 Score=77.45 Aligned_cols=43 Identities=16% Similarity=0.088 Sum_probs=34.5
Q ss_pred EeeEEEEECCccccchhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHc
Q 019702 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIAR 144 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~g 144 (337)
+++|+++-. ..++.+++.+.+| +++|+|||||||||++.+|.+
T Consensus 6 i~~L~l~~~----~~~~~~~~~~~~g-~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 6 LSALSTLNY----RNLAPGTLNFPEG-VTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp EEEEEEESB----TTCCSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred EeEEEEeCc----cceeeeEEEEcCC-eEEEECCCCCChhHHHHHHHH
Confidence 556666521 1256778888888 999999999999999999997
No 213
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=97.84 E-value=5.2e-06 Score=70.91 Aligned_cols=27 Identities=26% Similarity=0.462 Sum_probs=25.3
Q ss_pred CEEEEEcCCCCcHHHHHHHHHcccccc
Q 019702 123 KSILFVGRPGVGKTTVMREIARVLSDE 149 (337)
Q Consensus 123 ~~v~IiGpnGsGKTTLL~~l~gll~~~ 149 (337)
+.++|+|+||||||||++.|+|++.++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~ 29 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRER 29 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 579999999999999999999999885
No 214
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.81 E-value=7.9e-05 Score=71.17 Aligned_cols=113 Identities=16% Similarity=0.192 Sum_probs=64.4
Q ss_pred cccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEcCCccccc----CCCCcccccccchhccCCCcchhHHHHH
Q 019702 118 LLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGG----DGDIPHSAIGTARRMQVPEPSLQHKVMI 193 (337)
Q Consensus 118 ~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~~~~ei~~----~~~~~~~~~~~~~~~~~~S~g~k~r~~i 193 (337)
-+++|.++.|.||+|||||||+..++...... +..+.|++....... ..++....+.. .. .... .+...+
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~~~~-g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i---~~-~~~~-e~~l~~ 143 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQAQKA-GGTCAFIDAEHALDPVYARALGVNTDELLV---SQ-PDNG-EQALEI 143 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHT-TCCEEEEESSCCCCHHHHHHTTCCGGGCEE---EC-CSSH-HHHHHH
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHHHHC-CCeEEEEECCCChhHHHHHHcCCCHHHcee---ec-CCcH-HHHHHH
Confidence 36689999999999999999998887665433 567888765432110 00111111100 00 1112 222333
Q ss_pred HHHHh--hCCcEEEEcCCCCHH----------------H----HHHHHHH----HhcCCeEEEEEcCcc
Q 019702 194 EAVEN--HMPEVIIVDEIGTEA----------------E----AHACRSI----AERGVMLIGTAHGEW 236 (337)
Q Consensus 194 a~al~--~~P~vlilDEp~~~l----------------d----~~~l~~~----~~~G~tvi~t~H~~~ 236 (337)
+..+. ..+++||+|.++.-. . .+.+..+ .+.+++||++.|-..
T Consensus 144 l~~l~~~~~~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~~~~lr~L~~~a~~~~~~VI~~nq~~~ 212 (366)
T 1xp8_A 144 MELLVRSGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFINQVRE 212 (366)
T ss_dssp HHHHHTTTCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHTTTCCEEEEEEEC--
T ss_pred HHHHHhcCCCCEEEEeChHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCEEEEEEeccc
Confidence 44443 579999999986521 1 1223333 356899999999764
No 215
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.80 E-value=4.7e-05 Score=72.22 Aligned_cols=70 Identities=29% Similarity=0.422 Sum_probs=45.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEcCCcccccCCCCcccccccchhccCCCcchhHHHHHHHHHhhC
Q 019702 121 YGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHM 200 (337)
Q Consensus 121 ~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~~~~ei~~~~~~~~~~~~~~~~~~~~S~g~k~r~~ia~al~~~ 200 (337)
....++|.||+|+||||++++++..+. ..+..+... ++. ....+ ......+..+..+....
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~~~----~~~~~i~~~-~l~------~~~~g--------~~~~~~~~~~~~a~~~~ 176 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQSG----ATFFSISAS-SLT------SKWVG--------EGEKMVRALFAVARCQQ 176 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHHTT----CEEEEEEGG-GGC------CSSTT--------HHHHHHHHHHHHHHHTC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHcC----CeEEEEehH-Hhh------ccccc--------hHHHHHHHHHHHHHhcC
Confidence 456899999999999999999998753 334443321 110 00000 11223344566677788
Q ss_pred CcEEEEcCC
Q 019702 201 PEVIIVDEI 209 (337)
Q Consensus 201 P~vlilDEp 209 (337)
|.+|++||+
T Consensus 177 ~~vl~iDEi 185 (357)
T 3d8b_A 177 PAVIFIDEI 185 (357)
T ss_dssp SEEEEEETH
T ss_pred CeEEEEeCc
Confidence 999999998
No 216
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.79 E-value=1.3e-05 Score=75.67 Aligned_cols=46 Identities=22% Similarity=0.390 Sum_probs=39.6
Q ss_pred hhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEc
Q 019702 112 IDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD 158 (337)
Q Consensus 112 ~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~ 158 (337)
+..+++...++..++|+|+||+|||||++.|++.+.+. ++++.+++
T Consensus 46 ~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~-~~~v~v~~ 91 (341)
T 2p67_A 46 LDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIRE-GLKVAVIA 91 (341)
T ss_dssp HHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHT-TCCEEEEE
T ss_pred HHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhc-CCeEEEEe
Confidence 67788888899999999999999999999999998775 56666654
No 217
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.78 E-value=2.8e-05 Score=75.03 Aligned_cols=119 Identities=20% Similarity=0.339 Sum_probs=72.8
Q ss_pred ccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEcCCcccccCCCCcccccccchhccCCCcchhHHHHHHHHHh
Q 019702 119 LHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVEN 198 (337)
Q Consensus 119 v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~~~~ei~~~~~~~~~~~~~~~~~~~~S~g~k~r~~ia~al~ 198 (337)
+.+...+++.||||+|||+|.+++++.... .+..+..+ ++. ...++ .+...-|-.+..|..
T Consensus 179 i~~prGvLL~GPPGTGKTllAkAiA~e~~~----~f~~v~~s-~l~------sk~vG--------ese~~vr~lF~~Ar~ 239 (405)
T 4b4t_J 179 IAQPKGVILYGPPGTGKTLLARAVAHHTDC----KFIRVSGA-ELV------QKYIG--------EGSRMVRELFVMARE 239 (405)
T ss_dssp CCCCCCEEEESCSSSSHHHHHHHHHHHHTC----EEEEEEGG-GGS------CSSTT--------HHHHHHHHHHHHHHH
T ss_pred CCCCCceEEeCCCCCCHHHHHHHHHHhhCC----CceEEEhH-Hhh------ccccc--------hHHHHHHHHHHHHHH
Confidence 344456999999999999999999997643 34444321 111 00111 112234567888889
Q ss_pred hCCcEEEEcCCCCH----------HH--H-----HHHHHHH----hcCCeEEEEEcCcchhHHhhchHHHHHhcCc---e
Q 019702 199 HMPEVIIVDEIGTE----------AE--A-----HACRSIA----ERGVMLIGTAHGEWLENIIKNPILSDLIGGV---D 254 (337)
Q Consensus 199 ~~P~vlilDEp~~~----------ld--~-----~~l~~~~----~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G---~ 254 (337)
+.|.||++||.-+- -+ . ..+..+- ..++.||++|...+..+ +.+ +.-| +
T Consensus 240 ~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~LD----pAl---lRpGRfD~ 312 (405)
T 4b4t_J 240 HAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILD----PAL---LRPGRIDR 312 (405)
T ss_dssp TCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSSSC----HHH---HSTTSSCC
T ss_pred hCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChhhCC----HhH---cCCCcCce
Confidence 99999999998541 11 1 1222221 23567889998877443 333 4434 3
Q ss_pred EEEecCHHH
Q 019702 255 TVTLGDEEA 263 (337)
Q Consensus 255 iv~~g~~~~ 263 (337)
.+..+-|+.
T Consensus 313 ~I~i~lPd~ 321 (405)
T 4b4t_J 313 KIEFPPPSV 321 (405)
T ss_dssp EEECCCCCH
T ss_pred EEEcCCcCH
Confidence 677777764
No 218
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.77 E-value=3.5e-05 Score=75.24 Aligned_cols=119 Identities=21% Similarity=0.291 Sum_probs=72.7
Q ss_pred ccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEcCCcccccCCCCcccccccchhccCCCcchhHHHHHHHHHh
Q 019702 119 LHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVEN 198 (337)
Q Consensus 119 v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~~~~ei~~~~~~~~~~~~~~~~~~~~S~g~k~r~~ia~al~ 198 (337)
+.+...+++.||||+|||+|.+++++.... .+..+..+ ++. ...++ .+...-+..+..|..
T Consensus 212 ~~~prGvLL~GPPGtGKTllAkAiA~e~~~----~~~~v~~s-~l~------sk~~G--------ese~~ir~~F~~A~~ 272 (437)
T 4b4t_L 212 IKPPKGVLLYGPPGTGKTLLAKAVAATIGA----NFIFSPAS-GIV------DKYIG--------ESARIIREMFAYAKE 272 (437)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHHHHTC----EEEEEEGG-GTC------CSSSS--------HHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHhCC----CEEEEehh-hhc------cccch--------HHHHHHHHHHHHHHh
Confidence 344568999999999999999999997643 34444321 111 00111 112344567888889
Q ss_pred hCCcEEEEcCCCCH----------HH--H-----HHHHHHH----hcCCeEEEEEcCcchhHHhhchHHHHHhcCce---
Q 019702 199 HMPEVIIVDEIGTE----------AE--A-----HACRSIA----ERGVMLIGTAHGEWLENIIKNPILSDLIGGVD--- 254 (337)
Q Consensus 199 ~~P~vlilDEp~~~----------ld--~-----~~l~~~~----~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~--- 254 (337)
+.|.||++||.-+- .+ . ..+..+- ..++.||++|...+..+ +. ++..|+
T Consensus 273 ~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~LD----pA---llRpGRfD~ 345 (437)
T 4b4t_L 273 HEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTLD----PA---LLRPGRLDR 345 (437)
T ss_dssp SCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTSSC----TT---TTSTTSEEE
T ss_pred cCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCchhhC----HH---HhCCCccce
Confidence 99999999999541 01 1 2233331 23567899998776442 33 345554
Q ss_pred EEEecCHHH
Q 019702 255 TVTLGDEEA 263 (337)
Q Consensus 255 iv~~g~~~~ 263 (337)
.+..+-|+.
T Consensus 346 ~I~i~lPd~ 354 (437)
T 4b4t_L 346 KVEIPLPNE 354 (437)
T ss_dssp EECCCCCCH
T ss_pred eeecCCcCH
Confidence 566777754
No 219
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.77 E-value=3.5e-05 Score=75.20 Aligned_cols=119 Identities=17% Similarity=0.262 Sum_probs=72.3
Q ss_pred ccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEcCCcccccCCCCcccccccchhccCCCcchhHHHHHHHHHh
Q 019702 119 LHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVEN 198 (337)
Q Consensus 119 v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~~~~ei~~~~~~~~~~~~~~~~~~~~S~g~k~r~~ia~al~ 198 (337)
+.+...+++.||||+|||+|.+++++.... .+..+.. .++. ...++ .+...-|..+..|..
T Consensus 212 ~~~prGvLLyGPPGTGKTllAkAiA~e~~~----~f~~v~~-s~l~------~~~vG--------ese~~ir~lF~~A~~ 272 (434)
T 4b4t_M 212 IRAPKGALMYGPPGTGKTLLARACAAQTNA----TFLKLAA-PQLV------QMYIG--------EGAKLVRDAFALAKE 272 (434)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHHHHTC----EEEEEEG-GGGC------SSCSS--------HHHHHHHHHHHHHHH
T ss_pred CCCCCeeEEECcCCCCHHHHHHHHHHHhCC----CEEEEeh-hhhh------hcccc--------hHHHHHHHHHHHHHh
Confidence 344568999999999999999999997643 3444432 1111 00111 122345667888889
Q ss_pred hCCcEEEEcCCCCH-------HH-----H-----HHHHHHH----hcCCeEEEEEcCcchhHHhhchHHHHHhcCce---
Q 019702 199 HMPEVIIVDEIGTE-------AE-----A-----HACRSIA----ERGVMLIGTAHGEWLENIIKNPILSDLIGGVD--- 254 (337)
Q Consensus 199 ~~P~vlilDEp~~~-------ld-----~-----~~l~~~~----~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~--- 254 (337)
+.|.||++||.-+- .+ . ..+..+- ..++.||++|...+..+ +. ++..|+
T Consensus 273 ~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp~~LD----~A---llRpGRfD~ 345 (434)
T 4b4t_M 273 KAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVLD----PA---LLRSGRLDR 345 (434)
T ss_dssp HCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSSCCCCC----TT---TCSTTSEEE
T ss_pred cCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCCchhcC----Hh---HhcCCceeE
Confidence 99999999998331 11 1 1222221 23567888988776443 22 344443
Q ss_pred EEEecCHHH
Q 019702 255 TVTLGDEEA 263 (337)
Q Consensus 255 iv~~g~~~~ 263 (337)
.+..+-|+.
T Consensus 346 ~I~i~lPd~ 354 (434)
T 4b4t_M 346 KIEFPLPSE 354 (434)
T ss_dssp EEECCCCCH
T ss_pred EEEeCCcCH
Confidence 577777754
No 220
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.76 E-value=1.4e-05 Score=69.89 Aligned_cols=29 Identities=17% Similarity=0.447 Sum_probs=26.1
Q ss_pred ccCCCEEEEEcCCCCcHHHHHHHHHcccc
Q 019702 119 LHYGKSILFVGRPGVGKTTVMREIARVLS 147 (337)
Q Consensus 119 v~~g~~v~IiGpnGsGKTTLL~~l~gll~ 147 (337)
..+|+.++|+||||||||||++.|++..+
T Consensus 16 ~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 16 FQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 34789999999999999999999999864
No 221
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.76 E-value=7.4e-05 Score=62.60 Aligned_cols=28 Identities=29% Similarity=0.628 Sum_probs=24.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHccccc
Q 019702 121 YGKSILFVGRPGVGKTTVMREIARVLSD 148 (337)
Q Consensus 121 ~g~~v~IiGpnGsGKTTLL~~l~gll~~ 148 (337)
.+..++|.||+|+||||+++.++..+..
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 3468999999999999999999988754
No 222
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=97.75 E-value=0.00011 Score=63.89 Aligned_cols=109 Identities=17% Similarity=0.145 Sum_probs=63.0
Q ss_pred CCCEEEEEcCCCCcHH-HHHHHHHccccccCCCeEEEEcCC--cccccCCCCcccccccc-hhccCCCcchhHHHHHHHH
Q 019702 121 YGKSILFVGRPGVGKT-TVMREIARVLSDEFQKRVVIVDTS--NEIGGDGDIPHSAIGTA-RRMQVPEPSLQHKVMIEAV 196 (337)
Q Consensus 121 ~g~~v~IiGpnGsGKT-TLL~~l~gll~~~~~~~i~~v~~~--~ei~~~~~~~~~~~~~~-~~~~~~S~g~k~r~~ia~a 196 (337)
.|++..|.||.||||| .||+.+-..... +.++.++... ..+. . .+... .+.. .-..+.+. ...+.
T Consensus 19 ~g~l~fiyG~MgsGKTt~Ll~~i~n~~~~--~~kvl~~kp~~D~R~~-~-~i~S~-~g~~~~A~~~~~~-~d~~~----- 87 (195)
T 1w4r_A 19 RGQIQVILGPMFSGKSTELMRRVRRFQIA--QYKCLVIKYAKDTRYS-S-SFCTH-DRNTMEALPACLL-RDVAQ----- 87 (195)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHHHT--TCCEEEEEETTCCCGG-G-SCCHH-HHHHSEEEEESSG-GGGHH-----
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHc--CCeEEEEccccCccch-h-hhhhc-cCCcccceecCCH-HHHHH-----
Confidence 5889999999999999 566666665443 4666666321 1111 1 11110 0000 00001111 11111
Q ss_pred HhhCCcEEEEcCCC-CHHHHHHHHHHHhcCCeEEEEEcCcchhHH
Q 019702 197 ENHMPEVIIVDEIG-TEAEAHACRSIAERGVMLIGTAHGEWLENI 240 (337)
Q Consensus 197 l~~~P~vlilDEp~-~~ld~~~l~~~~~~G~tvi~t~H~~~~~~~ 240 (337)
...+.|+|++||.- -..-.+.+..+++.|+.||++..+.++-..
T Consensus 88 ~~~~~DvIlIDEaQFfk~~ve~~~~L~~~gk~VI~~GL~~DF~~~ 132 (195)
T 1w4r_A 88 EALGVAVIGIDEGQFFPDIVEFCEAMANAGKTVIVAALDGTFQRK 132 (195)
T ss_dssp HHHTCSEEEESSGGGCTTHHHHHHHHHHTTCEEEEEEESBCTTSS
T ss_pred hccCCCEEEEEchhhhHHHHHHHHHHHHCCCeEEEEecccccccc
Confidence 14578999999992 222356677788889999999999885443
No 223
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=97.75 E-value=0.0002 Score=59.45 Aligned_cols=24 Identities=29% Similarity=0.580 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcccc
Q 019702 124 SILFVGRPGVGKTTVMREIARVLS 147 (337)
Q Consensus 124 ~v~IiGpnGsGKTTLL~~l~gll~ 147 (337)
.++|+|+||+|||||++.+++...
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~~ 28 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGENV 28 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCe
Confidence 589999999999999999998643
No 224
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.73 E-value=8.9e-05 Score=76.24 Aligned_cols=125 Identities=14% Similarity=0.076 Sum_probs=69.0
Q ss_pred hcccCCCEEEEEcCCCCcHHHHHHHHHccccccC-CCeEEEEcCCccccc---------CCCCccc-cccc-chhccCC-
Q 019702 117 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEF-QKRVVIVDTSNEIGG---------DGDIPHS-AIGT-ARRMQVP- 183 (337)
Q Consensus 117 ~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~-~~~i~~v~~~~ei~~---------~~~~~~~-~~~~-~~~~~~~- 183 (337)
+.+.++..++|+|++|+|||||++.|++...+.. .+.+ .....+.. .....+. .+.. .....+.
T Consensus 4 ~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V---~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliD 80 (665)
T 2dy1_A 4 EGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV---EEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLD 80 (665)
T ss_dssp --CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG---GGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEE
T ss_pred CccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee---cCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEe
Confidence 3467788999999999999999999997764311 1222 11000000 0000000 0000 0001111
Q ss_pred Ccch-hH-HHHHHHHHhhCCcEEEEcCCCCHHHH---HHHHHHHhcCCeEEEEEcCcchhHHhhchHH
Q 019702 184 EPSL-QH-KVMIEAVENHMPEVIIVDEIGTEAEA---HACRSIAERGVMLIGTAHGEWLENIIKNPIL 246 (337)
Q Consensus 184 S~g~-k~-r~~ia~al~~~P~vlilDEp~~~ld~---~~l~~~~~~G~tvi~t~H~~~~~~~~~d~v~ 246 (337)
.+|+ .. ..........++.++++| ++.+.+. +.+..+.+.+..+|++.|.++.. ...++++
T Consensus 81 TpG~~~f~~~~~~~l~~ad~~ilVvD-~~~g~~~qt~~~~~~~~~~~ip~ilv~NKiD~~-~~~~~~~ 146 (665)
T 2dy1_A 81 APGYGDFVGEIRGALEAADAALVAVS-AEAGVQVGTERAWTVAERLGLPRMVVVTKLDKG-GDYYALL 146 (665)
T ss_dssp CCCSGGGHHHHHHHHHHCSEEEEEEE-TTTCSCHHHHHHHHHHHHTTCCEEEEEECGGGC-CCHHHHH
T ss_pred CCCccchHHHHHHHHhhcCcEEEEEc-CCcccchhHHHHHHHHHHccCCEEEEecCCchh-hhHHHHH
Confidence 2232 22 334445556788899999 8877664 34555556789999999998865 4444444
No 225
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.73 E-value=1.1e-05 Score=80.29 Aligned_cols=33 Identities=36% Similarity=0.551 Sum_probs=26.6
Q ss_pred hhhhhcccCCCEEEEEcCCCCcHHHHHHHHHcccc
Q 019702 113 DMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLS 147 (337)
Q Consensus 113 ~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~ 147 (337)
..+++.+++| ++|+||||+|||||+++|++...
T Consensus 57 ~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~ 89 (499)
T 2dhr_A 57 HEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR 89 (499)
T ss_dssp TTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT
T ss_pred hhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC
Confidence 3444445555 99999999999999999999874
No 226
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.73 E-value=9.8e-05 Score=72.19 Aligned_cols=73 Identities=23% Similarity=0.435 Sum_probs=45.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEcCCcccccCCCCcccccccchhccCCCcchhHHHHHHHHHhhC
Q 019702 121 YGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHM 200 (337)
Q Consensus 121 ~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~~~~ei~~~~~~~~~~~~~~~~~~~~S~g~k~r~~ia~al~~~ 200 (337)
+...++|.||+|+|||||+++++..+. +..+..+... ++.. ...+ ......+..+..+....
T Consensus 166 ~~~~vLL~GppGtGKT~lA~aia~~~~---~~~~~~v~~~-~l~~------~~~g--------~~~~~~~~~f~~a~~~~ 227 (444)
T 2zan_A 166 PWRGILLFGPPGTGKSYLAKAVATEAN---NSTFFSISSS-DLVS------KWLG--------ESEKLVKNLFQLARENK 227 (444)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHHCC---SSEEEEECCC------------------------CCCTHHHHHHHHHHSC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHcC---CCCEEEEeHH-HHHh------hhcc--------hHHHHHHHHHHHHHHcC
Confidence 446899999999999999999999762 2344444332 1110 0001 01122344556666789
Q ss_pred CcEEEEcCCCC
Q 019702 201 PEVIIVDEIGT 211 (337)
Q Consensus 201 P~vlilDEp~~ 211 (337)
|.+|++||..+
T Consensus 228 ~~vl~iDEid~ 238 (444)
T 2zan_A 228 PSIIFIDEIDS 238 (444)
T ss_dssp SEEEEESCTTT
T ss_pred CeEEEEechHh
Confidence 99999999964
No 227
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.73 E-value=0.00011 Score=63.69 Aligned_cols=37 Identities=35% Similarity=0.567 Sum_probs=28.8
Q ss_pred hhhhhhcccCCC---EEEEEcCCCCcHHHHHHHHHccccc
Q 019702 112 IDMVYDLLHYGK---SILFVGRPGVGKTTVMREIARVLSD 148 (337)
Q Consensus 112 ~~~l~~~v~~g~---~v~IiGpnGsGKTTLL~~l~gll~~ 148 (337)
++.+...+..+. .++|.||+|+|||||++.++..+..
T Consensus 32 ~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~ 71 (250)
T 1njg_A 32 LTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 71 (250)
T ss_dssp HHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 444555555554 8999999999999999999987754
No 228
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.72 E-value=1.7e-05 Score=68.90 Aligned_cols=31 Identities=23% Similarity=0.164 Sum_probs=27.6
Q ss_pred hcccCCCEEEEEcCCCCcHHHHHHHHHcccc
Q 019702 117 DLLHYGKSILFVGRPGVGKTTVMREIARVLS 147 (337)
Q Consensus 117 ~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~ 147 (337)
..+.+|.+++|+|++||||||+++.|++.+.
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~ 46 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTLAKNLQKHLP 46 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHHHHHHHTTST
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4567889999999999999999999999763
No 229
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=97.72 E-value=6.6e-05 Score=71.17 Aligned_cols=111 Identities=14% Similarity=0.129 Sum_probs=57.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHccccccC-----CC--eEEEEcCC-cccccCCCCcccccccc-hhccCCCcchhHHHH
Q 019702 122 GKSILFVGRPGVGKTTVMREIARVLSDEF-----QK--RVVIVDTS-NEIGGDGDIPHSAIGTA-RRMQVPEPSLQHKVM 192 (337)
Q Consensus 122 g~~v~IiGpnGsGKTTLL~~l~gll~~~~-----~~--~i~~v~~~-~ei~~~~~~~~~~~~~~-~~~~~~S~g~k~r~~ 192 (337)
.-.++|+|+||+|||||++.+++...... .. .+..++.. ..+... ..+ +.. ......+.++++.+.
T Consensus 167 ~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~-Dt~----G~~~~~~~~~~~~~~~~~~ 241 (357)
T 2e87_A 167 IPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGYFRYQII-DTP----GLLDRPISERNEIEKQAIL 241 (357)
T ss_dssp SCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETTEEEEEE-ECT----TTSSSCSTTSCHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecCceEEEE-eCC----CccccchhhhhHHHHHHHH
Confidence 45799999999999999999998653110 00 11111100 000000 000 000 011223445555433
Q ss_pred HHHHHhhCCcEEEEc-CCCCHHHH----HHHHHHHh--cCCeEEEEE--cCcchh
Q 019702 193 IEAVENHMPEVIIVD-EIGTEAEA----HACRSIAE--RGVMLIGTA--HGEWLE 238 (337)
Q Consensus 193 ia~al~~~P~vlilD-Ep~~~ld~----~~l~~~~~--~G~tvi~t~--H~~~~~ 238 (337)
+.+...++-++++| ++..+++. ..+..+.+ .+..+|++. ||+...
T Consensus 242 -~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~~~ 295 (357)
T 2e87_A 242 -ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVADE 295 (357)
T ss_dssp -GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTCCH
T ss_pred -HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccCCh
Confidence 33334566788999 88764332 33444432 277788877 887543
No 230
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.70 E-value=0.00014 Score=68.88 Aligned_cols=31 Identities=29% Similarity=0.497 Sum_probs=24.2
Q ss_pred hhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHcc
Q 019702 112 IDMVYDLLHYGKSILFVGRPGVGKTTVMREIARV 145 (337)
Q Consensus 112 ~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gl 145 (337)
++.+++.++ .++|+|++|||||||++.|+|.
T Consensus 27 l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~ 57 (360)
T 3t34_A 27 LPTLWDSLP---AIAVVGGQSSGKSSVLESIVGK 57 (360)
T ss_dssp C----CCCC---EEEEECBTTSSHHHHHHHHHTS
T ss_pred cccccccCC---EEEEECCCCCcHHHHHHHHhCC
Confidence 566666666 8999999999999999999994
No 231
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.70 E-value=6.5e-05 Score=71.23 Aligned_cols=72 Identities=21% Similarity=0.376 Sum_probs=45.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEcCCcccccCCCCcccccccchhccCCCcchhHHHHHHHHHhhC
Q 019702 121 YGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHM 200 (337)
Q Consensus 121 ~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~~~~ei~~~~~~~~~~~~~~~~~~~~S~g~k~r~~ia~al~~~ 200 (337)
+...++|.||+|+|||||+++++..+. ..+..+... ++.. ... .......+..+..+....
T Consensus 83 ~~~~iLL~GppGtGKT~la~ala~~~~----~~~~~v~~~-~l~~------~~~--------g~~~~~~~~~f~~a~~~~ 143 (355)
T 2qp9_X 83 PTSGILLYGPPGTGKSYLAKAVATEAN----STFFSVSSS-DLVS------KWM--------GESEKLVKQLFAMARENK 143 (355)
T ss_dssp CCCCEEEECSTTSCHHHHHHHHHHHHT----CEEEEEEHH-HHHS------CC-----------CHHHHHHHHHHHHHTS
T ss_pred CCceEEEECCCCCcHHHHHHHHHHHhC----CCEEEeeHH-HHhh------hhc--------chHHHHHHHHHHHHHHcC
Confidence 345689999999999999999999763 234333211 1100 000 111223344566666779
Q ss_pred CcEEEEcCCCC
Q 019702 201 PEVIIVDEIGT 211 (337)
Q Consensus 201 P~vlilDEp~~ 211 (337)
|.+|++||..+
T Consensus 144 ~~vl~iDEid~ 154 (355)
T 2qp9_X 144 PSIIFIDQVDA 154 (355)
T ss_dssp SEEEEEECGGG
T ss_pred CeEEEEechHh
Confidence 99999999854
No 232
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.70 E-value=0.00017 Score=66.18 Aligned_cols=28 Identities=39% Similarity=0.568 Sum_probs=24.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHccccc
Q 019702 121 YGKSILFVGRPGVGKTTVMREIARVLSD 148 (337)
Q Consensus 121 ~g~~v~IiGpnGsGKTTLL~~l~gll~~ 148 (337)
.+..++|.||+|+||||++++++..+..
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l~~ 93 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLLHR 93 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3457999999999999999999988754
No 233
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.69 E-value=2.3e-05 Score=66.49 Aligned_cols=38 Identities=26% Similarity=0.320 Sum_probs=29.5
Q ss_pred cCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEc
Q 019702 120 HYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD 158 (337)
Q Consensus 120 ~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~ 158 (337)
.+|.+++|+|++||||||+++.|++.+.+. +..+..++
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~~-g~~~i~~d 40 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVCH-GIPCYTLD 40 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhC-CCcEEEEC
Confidence 358899999999999999999999988663 33344333
No 234
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.69 E-value=5.3e-05 Score=68.65 Aligned_cols=71 Identities=20% Similarity=0.279 Sum_probs=42.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEcCCcccccCCCCcccccccchhccCCCcchhHHHHHHHHHhhC
Q 019702 121 YGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHM 200 (337)
Q Consensus 121 ~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~~~~ei~~~~~~~~~~~~~~~~~~~~S~g~k~r~~ia~al~~~ 200 (337)
+...++|.||+|+||||++++++.... ..+..+.....+.. .... ......+-.+..+....
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~~~~----~~~~~i~~~~~~~g---~~~~-----------~~~~~~~~~~~~~~~~~ 124 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAEESN----FPFIKICSPDKMIG---FSET-----------AKCQAMKKIFDDAYKSQ 124 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHHHT----CSEEEEECGGGCTT---CCHH-----------HHHHHHHHHHHHHHTSS
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHhC----CCEEEEeCHHHhcC---CchH-----------HHHHHHHHHHHHHHhcC
Confidence 345799999999999999999998743 23333332221110 0000 00012223445555577
Q ss_pred CcEEEEcCC
Q 019702 201 PEVIIVDEI 209 (337)
Q Consensus 201 P~vlilDEp 209 (337)
|.+|++||.
T Consensus 125 ~~vl~iDEi 133 (272)
T 1d2n_A 125 LSCVVVDDI 133 (272)
T ss_dssp EEEEEECCH
T ss_pred CcEEEEECh
Confidence 999999996
No 235
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.69 E-value=0.00014 Score=70.96 Aligned_cols=88 Identities=22% Similarity=0.247 Sum_probs=51.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEcCCcccccC-CCC--cccccccchhccC---CCcchhHHHHHHH
Q 019702 122 GKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGD-GDI--PHSAIGTARRMQV---PEPSLQHKVMIEA 195 (337)
Q Consensus 122 g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~~~~ei~~~-~~~--~~~~~~~~~~~~~---~S~g~k~r~~ia~ 195 (337)
+.+++++|++||||||++..|+..+... +.++.+++....-... ..+ .....+ ...+.. .++..-.+-++..
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~-G~kVllv~~D~~R~aa~eqL~~~~~~~g-vpv~~~~~~~dp~~i~~~al~~ 177 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKR-GYKVGVVCSDTWRPGAYHQLRQLLDRYH-IEVFGNPQEKDAIKLAKEGVDY 177 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTT-TCCEEEEECCCSSTHHHHHHHHHHGGGT-CEEECCTTCCCHHHHHHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHC-CCeEEEEeCCCcchhHHHHHHHHHHhcC-CcEEecCCCCCHHHHHHHHHHH
Confidence 5689999999999999999999998764 6778777643211000 000 000000 000000 1111122335666
Q ss_pred HHhhCCcEEEEcCCCC
Q 019702 196 VENHMPEVIIVDEIGT 211 (337)
Q Consensus 196 al~~~P~vlilDEp~~ 211 (337)
+...++|++|+|.|..
T Consensus 178 a~~~~~DvVIIDTaGr 193 (443)
T 3dm5_A 178 FKSKGVDIIIVDTAGR 193 (443)
T ss_dssp HHHTTCSEEEEECCCC
T ss_pred HHhCCCCEEEEECCCc
Confidence 6667899999999964
No 236
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.68 E-value=4.2e-05 Score=71.40 Aligned_cols=71 Identities=21% Similarity=0.428 Sum_probs=45.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEcCCcccccCCCCcccccccchhccCCCcchhHHHHHHHHHhhCC
Q 019702 122 GKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMP 201 (337)
Q Consensus 122 g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~~~~ei~~~~~~~~~~~~~~~~~~~~S~g~k~r~~ia~al~~~P 201 (337)
...++|.||+|+|||||+++++.... ..+..+.. .++.. ...+ ......+-.+..+....|
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~~~----~~~~~v~~-~~l~~------~~~g--------~~~~~~~~~f~~a~~~~~ 111 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATEAN----STFFSVSS-SDLVS------KWMG--------ESEKLVKQLFAMARENKP 111 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHHHT----CEEEEEEH-HHHHT------TTGG--------GHHHHHHHHHHHHHHTSS
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHC----CCEEEEch-HHHhh------cccc--------hHHHHHHHHHHHHHhcCC
Confidence 45799999999999999999998753 33443321 11100 0000 111233445667778899
Q ss_pred cEEEEcCCCC
Q 019702 202 EVIIVDEIGT 211 (337)
Q Consensus 202 ~vlilDEp~~ 211 (337)
.+|++||.-+
T Consensus 112 ~vl~iDEid~ 121 (322)
T 3eie_A 112 SIIFIDQVDA 121 (322)
T ss_dssp EEEEEECGGG
T ss_pred eEEEechhhh
Confidence 9999999853
No 237
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.67 E-value=0.00018 Score=68.89 Aligned_cols=71 Identities=18% Similarity=0.408 Sum_probs=45.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEcCCcccccCCCCcccccccchhccCCCcchhHHHHHHHHHhhC
Q 019702 121 YGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHM 200 (337)
Q Consensus 121 ~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~~~~ei~~~~~~~~~~~~~~~~~~~~S~g~k~r~~ia~al~~~ 200 (337)
++..++|.||+|+||||++++++... +..++.+.... +. ....+ ......+..+..+....
T Consensus 147 ~~~~vLL~GppGtGKT~la~aia~~~----~~~~~~v~~~~-l~------~~~~g--------~~~~~~~~~~~~a~~~~ 207 (389)
T 3vfd_A 147 PARGLLLFGPPGNGKTMLAKAVAAES----NATFFNISAAS-LT------SKYVG--------EGEKLVRALFAVARELQ 207 (389)
T ss_dssp CCSEEEEESSTTSCHHHHHHHHHHHT----TCEEEEECSCC-C---------------------CHHHHHHHHHHHHHSS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhh----cCcEEEeeHHH-hh------ccccc--------hHHHHHHHHHHHHHhcC
Confidence 35689999999999999999998864 33455443321 11 00000 11122344566666788
Q ss_pred CcEEEEcCCC
Q 019702 201 PEVIIVDEIG 210 (337)
Q Consensus 201 P~vlilDEp~ 210 (337)
|.+|++||.-
T Consensus 208 ~~il~iDEid 217 (389)
T 3vfd_A 208 PSIIFIDQVD 217 (389)
T ss_dssp SEEEEEETGG
T ss_pred CeEEEEECch
Confidence 9999999994
No 238
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.66 E-value=5.8e-05 Score=73.94 Aligned_cols=119 Identities=19% Similarity=0.258 Sum_probs=71.9
Q ss_pred ccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEcCCcccccCCCCcccccccchhccCCCcchhHHHHHHHHHh
Q 019702 119 LHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVEN 198 (337)
Q Consensus 119 v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~~~~ei~~~~~~~~~~~~~~~~~~~~S~g~k~r~~ia~al~ 198 (337)
+.+...+++.||||+|||+|.+++++.... .+..+.. .++. ...++ .+...-|..+..|..
T Consensus 240 i~pprGILLyGPPGTGKTlLAkAiA~e~~~----~fi~vs~-s~L~------sk~vG--------esek~ir~lF~~Ar~ 300 (467)
T 4b4t_H 240 IDPPKGILLYGPPGTGKTLCARAVANRTDA----TFIRVIG-SELV------QKYVG--------EGARMVRELFEMART 300 (467)
T ss_dssp CCCCSEEEECSCTTSSHHHHHHHHHHHHTC----EEEEEEG-GGGC------CCSSS--------HHHHHHHHHHHHHHH
T ss_pred CCCCCceEeeCCCCCcHHHHHHHHHhccCC----CeEEEEh-HHhh------cccCC--------HHHHHHHHHHHHHHh
Confidence 445678999999999999999999997643 3443332 1111 01111 122345667888899
Q ss_pred hCCcEEEEcCCCCH----------HH-------HHHHHHHH----hcCCeEEEEEcCcchhHHhhchHHHHHhcCc---e
Q 019702 199 HMPEVIIVDEIGTE----------AE-------AHACRSIA----ERGVMLIGTAHGEWLENIIKNPILSDLIGGV---D 254 (337)
Q Consensus 199 ~~P~vlilDEp~~~----------ld-------~~~l~~~~----~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G---~ 254 (337)
+.|.||++||.-+- .+ ...+..+- ..++.||++|...+..+ +.+ +.-| +
T Consensus 301 ~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd~LD----pAL---lRpGRFD~ 373 (467)
T 4b4t_H 301 KKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTLD----PAL---LRPGRIDR 373 (467)
T ss_dssp TCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTTSBC----HHH---HSTTTCCE
T ss_pred cCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCcccCC----hhh---hccccccE
Confidence 99999999999541 11 11222321 23567888887766432 333 3323 4
Q ss_pred EEEecCHHH
Q 019702 255 TVTLGDEEA 263 (337)
Q Consensus 255 iv~~g~~~~ 263 (337)
.+..+-|..
T Consensus 374 ~I~i~lPd~ 382 (467)
T 4b4t_H 374 KVEFSLPDL 382 (467)
T ss_dssp EECCCCCCH
T ss_pred EEEeCCcCH
Confidence 667777653
No 239
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=97.65 E-value=3e-05 Score=72.99 Aligned_cols=29 Identities=34% Similarity=0.448 Sum_probs=25.0
Q ss_pred cCCCEEEEEcCCCCcHHHHHHHHHccccc
Q 019702 120 HYGKSILFVGRPGVGKTTVMREIARVLSD 148 (337)
Q Consensus 120 ~~g~~v~IiGpnGsGKTTLL~~l~gll~~ 148 (337)
..+..++|.||+|+||||+++.++..+..
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~~ 70 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLEA 70 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 34568999999999999999999988743
No 240
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.65 E-value=5.4e-05 Score=69.84 Aligned_cols=26 Identities=19% Similarity=0.165 Sum_probs=22.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHcccc
Q 019702 122 GKSILFVGRPGVGKTTVMREIARVLS 147 (337)
Q Consensus 122 g~~v~IiGpnGsGKTTLL~~l~gll~ 147 (337)
...++|.||||+|||+|.++++..+.
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~l~ 61 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRKMG 61 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35788999999999999999999873
No 241
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.63 E-value=3.3e-05 Score=73.26 Aligned_cols=36 Identities=19% Similarity=0.491 Sum_probs=30.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEc
Q 019702 122 GKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD 158 (337)
Q Consensus 122 g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~ 158 (337)
+..++|+|+||||||||++.|++.+.+. ++++.++.
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~~~~-~~~v~V~~ 109 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKMLTER-GHKLSVLA 109 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEEE
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhhhc-CCeEEEEe
Confidence 6789999999999999999999998776 56666554
No 242
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=97.62 E-value=0.00011 Score=64.86 Aligned_cols=113 Identities=14% Similarity=0.199 Sum_probs=60.6
Q ss_pred cCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEcCC--cccccCCCCcccccccchhccCCCcchhHHHHHHHHH
Q 019702 120 HYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTS--NEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVE 197 (337)
Q Consensus 120 ~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~~~--~ei~~~~~~~~~~~~~~~~~~~~S~g~k~r~~ia~al 197 (337)
.+|.+..+.||-||||||.|--++--.... +.++.++... ...+......+..+. .....+.+. .. .+. ..
T Consensus 26 ~~G~l~vitG~MgsGKTT~lL~~a~r~~~~-g~kVli~k~~~d~R~ge~~i~s~~g~~-~~a~~~~~~-~~---~~~-~~ 98 (214)
T 2j9r_A 26 QNGWIEVICGSMFSGKSEELIRRVRRTQFA-KQHAIVFKPCIDNRYSEEDVVSHNGLK-VKAVPVSAS-KD---IFK-HI 98 (214)
T ss_dssp CSCEEEEEECSTTSCHHHHHHHHHHHHHHT-TCCEEEEECC------------------CCEEECSSG-GG---GGG-GC
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHC-CCEEEEEEeccCCcchHHHHHhhcCCe-eEEeecCCH-HH---HHH-HH
Confidence 468899999999999998876665544333 5566655211 111100000000000 000000000 00 000 00
Q ss_pred hhCCcEEEEcCCCC--HHHHHHHHHHHhcCCeEEEEEcCcchhH
Q 019702 198 NHMPEVIIVDEIGT--EAEAHACRSIAERGVMLIGTAHGEWLEN 239 (337)
Q Consensus 198 ~~~P~vlilDEp~~--~ld~~~l~~~~~~G~tvi~t~H~~~~~~ 239 (337)
..+.|+|++||.-- ...++.+..++..|+.||++.++.++-.
T Consensus 99 ~~~~dvViIDEaQF~~~~~V~~l~~l~~~~~~Vi~~Gl~~DF~~ 142 (214)
T 2j9r_A 99 TEEMDVIAIDEVQFFDGDIVEVVQVLANRGYRVIVAGLDQDFRG 142 (214)
T ss_dssp CSSCCEEEECCGGGSCTTHHHHHHHHHHTTCEEEEEECSBCTTS
T ss_pred hcCCCEEEEECcccCCHHHHHHHHHHhhCCCEEEEEeccccccc
Confidence 12589999999933 3446777777778999999999877543
No 243
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=97.62 E-value=2.6e-05 Score=75.82 Aligned_cols=31 Identities=26% Similarity=0.353 Sum_probs=27.7
Q ss_pred ccCCCEEEEEcCCCCcHHHHHHHHHcccccc
Q 019702 119 LHYGKSILFVGRPGVGKTTVMREIARVLSDE 149 (337)
Q Consensus 119 v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~ 149 (337)
+.+|++++|+|||||||||||.+|.+++.+.
T Consensus 23 ~~~~~~~~i~G~nG~GKstll~ai~~~~~~~ 53 (430)
T 1w1w_A 23 FGESNFTSIIGPNGSGKSNMMDAISFVLGVR 53 (430)
T ss_dssp CTTCSEEEEECSTTSSHHHHHHHHHHHTTC-
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHHhhhccc
Confidence 5668999999999999999999999998764
No 244
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.62 E-value=2e-05 Score=71.17 Aligned_cols=69 Identities=25% Similarity=0.433 Sum_probs=41.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEcCCcccccCCCCcccccccchhccCCCcchhHHHHHHHHHhhCCc
Q 019702 123 KSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPE 202 (337)
Q Consensus 123 ~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~~~~ei~~~~~~~~~~~~~~~~~~~~S~g~k~r~~ia~al~~~P~ 202 (337)
..++|.||+|+||||++++++...... +..+.. ..+ .....+ .+..+.+..+..+....|.
T Consensus 45 ~~vll~G~~GtGKT~la~~la~~~~~~----~~~v~~-~~~------~~~~~~--------~~~~~~~~~~~~a~~~~~~ 105 (268)
T 2r62_A 45 KGVLLVGPPGTGKTLLAKAVAGEAHVP----FFSMGG-SSF------IEMFVG--------LGASRVRDLFETAKKQAPS 105 (268)
T ss_dssp SCCCCBCSSCSSHHHHHHHHHHHHTCC----CCCCCS-CTT------TTSCSS--------SCSSSSSTTHHHHHHSCSC
T ss_pred ceEEEECCCCCcHHHHHHHHHHHhCCC----EEEech-HHH------HHhhcc--------hHHHHHHHHHHHHHhcCCe
Confidence 448899999999999999999876421 111111 111 000000 1111222345566677899
Q ss_pred EEEEcCCC
Q 019702 203 VIIVDEIG 210 (337)
Q Consensus 203 vlilDEp~ 210 (337)
+|++||+-
T Consensus 106 vl~iDEid 113 (268)
T 2r62_A 106 IIFIDEID 113 (268)
T ss_dssp EEEESCGG
T ss_pred EEEEeChh
Confidence 99999993
No 245
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.62 E-value=3.4e-05 Score=65.77 Aligned_cols=40 Identities=35% Similarity=0.586 Sum_probs=32.5
Q ss_pred cccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEc
Q 019702 118 LLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD 158 (337)
Q Consensus 118 ~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~ 158 (337)
...+|.++.|+|++||||||+.+.|+..+.+. +..+.+++
T Consensus 9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~-~~~~~~~~ 48 (186)
T 2yvu_A 9 CIEKGIVVWLTGLPGSGKTTIATRLADLLQKE-GYRVEVLD 48 (186)
T ss_dssp CCSCCEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEEE
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhc-CCeEEEee
Confidence 34578899999999999999999999998764 45555553
No 246
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.61 E-value=4.4e-05 Score=70.86 Aligned_cols=44 Identities=27% Similarity=0.287 Sum_probs=36.7
Q ss_pred hhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEcCC
Q 019702 115 VYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTS 160 (337)
Q Consensus 115 l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~~~ 160 (337)
+++..+ +.+++++|+||+||||++..|++.+.+. ++++.+++..
T Consensus 92 i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~-g~~v~l~~~D 135 (297)
T 1j8m_F 92 VIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKK-GFKVGLVGAD 135 (297)
T ss_dssp CSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHT-TCCEEEEECC
T ss_pred cccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEecC
Confidence 455555 8899999999999999999999999875 6788877654
No 247
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.58 E-value=4e-05 Score=71.40 Aligned_cols=36 Identities=22% Similarity=0.435 Sum_probs=29.0
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHcccc-ccCCCeEEEEc
Q 019702 122 GKSILFVGRPGVGKTTVMREIARVLS-DEFQKRVVIVD 158 (337)
Q Consensus 122 g~~v~IiGpnGsGKTTLL~~l~gll~-~~~~~~i~~v~ 158 (337)
+..+.|.||+|+|||+|+++|+..+. .. +..+.++.
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~-g~~v~~~~ 188 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKK-GVSTTLLH 188 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHS-CCCEEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhc-CCcEEEEE
Confidence 67899999999999999999999876 43 45555543
No 248
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.58 E-value=0.00012 Score=68.23 Aligned_cols=28 Identities=29% Similarity=0.273 Sum_probs=25.0
Q ss_pred cccCCCEEEEEcCCCCcHHHHHHHHHcc
Q 019702 118 LLHYGKSILFVGRPGVGKTTVMREIARV 145 (337)
Q Consensus 118 ~v~~g~~v~IiGpnGsGKTTLL~~l~gl 145 (337)
-+++|+++.|.||+|||||||+..++..
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999988863
No 249
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.58 E-value=3.1e-05 Score=67.64 Aligned_cols=42 Identities=21% Similarity=0.239 Sum_probs=33.8
Q ss_pred hcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEc
Q 019702 117 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD 158 (337)
Q Consensus 117 ~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~ 158 (337)
..+.+|.++.|+|++||||||+.+.|++.+.+..+..+.+++
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~ 61 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLD 61 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEC
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEEC
Confidence 457789999999999999999999999998754343455554
No 250
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=97.58 E-value=0.00032 Score=68.46 Aligned_cols=118 Identities=18% Similarity=0.123 Sum_probs=71.7
Q ss_pred hhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEcCCc--c-cc-----cCCCCcccccccchhccCC
Q 019702 112 IDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSN--E-IG-----GDGDIPHSAIGTARRMQVP 183 (337)
Q Consensus 112 ~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~~~~--e-i~-----~~~~~~~~~~~~~~~~~~~ 183 (337)
++.+..-+.+|+++.|.|+||+|||||+..++.......+..+.++.-.. + +. ....++...+ +.+.+
T Consensus 190 LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE~~~~~l~~R~~~~~~~i~~~~l----~~g~l 265 (444)
T 2q6t_A 190 LDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLEMPAAQLTLRMMCSEARIDMNRV----RLGQL 265 (444)
T ss_dssp HHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSSCHHHHHHHHHHHHTTCCTTTC----CGGGC
T ss_pred hhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHHHcCCCHHHH----hCCCC
Confidence 44444447899999999999999999999998877543355677664321 1 10 0011111111 11335
Q ss_pred CcchhHHHHHHHHHhhCCcEEEEcCCCCHHH-H-HHHHHHH-hcCCeEEEEEc
Q 019702 184 EPSLQHKVMIEAVENHMPEVIIVDEIGTEAE-A-HACRSIA-ERGVMLIGTAH 233 (337)
Q Consensus 184 S~g~k~r~~ia~al~~~P~vlilDEp~~~ld-~-~~l~~~~-~~G~tvi~t~H 233 (337)
+..+.+++.-+........+.+.|+|....+ + ..+..+. +.|..+|++-+
T Consensus 266 ~~~~~~~~~~a~~~l~~~~l~i~d~~~~s~~~l~~~~~~l~~~~~~~lIvID~ 318 (444)
T 2q6t_A 266 TDRDFSRLVDVASRLSEAPIYIDDTPDLTLMEVRARARRLVSQNQVGLIIIDY 318 (444)
T ss_dssp CHHHHHHHHHHHHHHHTSCEEEECCTTCBHHHHHHHHHHHHHHSCCCEEEEEC
T ss_pred CHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEcC
Confidence 6667777766666666777888888754333 2 3344454 45777776643
No 251
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.57 E-value=5.8e-05 Score=67.22 Aligned_cols=44 Identities=27% Similarity=0.357 Sum_probs=30.6
Q ss_pred hhhhhhcc---cCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEE
Q 019702 112 IDMVYDLL---HYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIV 157 (337)
Q Consensus 112 ~~~l~~~v---~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v 157 (337)
+...++.+ .+|.++.|.|++||||||+++.|+..+.+ +..+...
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~--~~~~~~~ 59 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK--DYDVIMT 59 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT--TSCEEEE
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc--CCCceee
Confidence 33444444 37899999999999999999999999876 4445443
No 252
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.55 E-value=3.6e-05 Score=67.53 Aligned_cols=25 Identities=32% Similarity=0.490 Sum_probs=23.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHccc
Q 019702 122 GKSILFVGRPGVGKTTVMREIARVL 146 (337)
Q Consensus 122 g~~v~IiGpnGsGKTTLL~~l~gll 146 (337)
+..++|+||+||||||+++.|++.+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999876
No 253
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.54 E-value=7.8e-05 Score=62.43 Aligned_cols=27 Identities=30% Similarity=0.612 Sum_probs=24.0
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHccccc
Q 019702 122 GKSILFVGRPGVGKTTVMREIARVLSD 148 (337)
Q Consensus 122 g~~v~IiGpnGsGKTTLL~~l~gll~~ 148 (337)
+..++|.||+|+||||+++.++..+..
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 568999999999999999999988754
No 254
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.54 E-value=0.00021 Score=66.57 Aligned_cols=36 Identities=28% Similarity=0.544 Sum_probs=29.6
Q ss_pred hhhhhhcccCC--CEEEEEcCCCCcHHHHHHHHHcccc
Q 019702 112 IDMVYDLLHYG--KSILFVGRPGVGKTTVMREIARVLS 147 (337)
Q Consensus 112 ~~~l~~~v~~g--~~v~IiGpnGsGKTTLL~~l~gll~ 147 (337)
.+.+...+..| ..++|.||+|+||||+++++++.+.
T Consensus 46 ~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 46 VTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp HHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 55666666665 4599999999999999999999875
No 255
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=97.52 E-value=0.00042 Score=59.30 Aligned_cols=36 Identities=33% Similarity=0.484 Sum_probs=26.7
Q ss_pred hhhhhhcccCC--CEEEEEcCCCCcHHHHHHHHHcccc
Q 019702 112 IDMVYDLLHYG--KSILFVGRPGVGKTTVMREIARVLS 147 (337)
Q Consensus 112 ~~~l~~~v~~g--~~v~IiGpnGsGKTTLL~~l~gll~ 147 (337)
.+.+...+..+ ..++|.||+|+||||+++.++..+.
T Consensus 26 ~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~ 63 (226)
T 2chg_A 26 IQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLF 63 (226)
T ss_dssp HHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHh
Confidence 33444444433 3599999999999999999998763
No 256
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=97.51 E-value=0.00026 Score=62.52 Aligned_cols=39 Identities=26% Similarity=0.306 Sum_probs=28.5
Q ss_pred cccCCCEEEEEcCCCCcHHHHHHHHHc--cccccCCCeEEEEc
Q 019702 118 LLHYGKSILFVGRPGVGKTTVMREIAR--VLSDEFQKRVVIVD 158 (337)
Q Consensus 118 ~v~~g~~v~IiGpnGsGKTTLL~~l~g--ll~~~~~~~i~~v~ 158 (337)
=+++|+++.|.|+||+|||||+..++- .... +..+.|+.
T Consensus 26 Gl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~--~~~v~~~s 66 (251)
T 2zts_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEY--GEPGVFVT 66 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHH--CCCEEEEE
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhc--CCCceeec
Confidence 377899999999999999999876653 2222 44565553
No 257
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.50 E-value=4.8e-05 Score=65.86 Aligned_cols=21 Identities=29% Similarity=0.374 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 019702 124 SILFVGRPGVGKTTVMREIAR 144 (337)
Q Consensus 124 ~v~IiGpnGsGKTTLL~~l~g 144 (337)
+++|+|||||||||+.+.|++
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999998
No 258
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.49 E-value=0.00037 Score=77.97 Aligned_cols=112 Identities=21% Similarity=0.266 Sum_probs=65.7
Q ss_pred ccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEcCCcccc----cCCCCcccccccchhccCCCcchhHHHHHH
Q 019702 119 LHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIG----GDGDIPHSAIGTARRMQVPEPSLQHKVMIE 194 (337)
Q Consensus 119 v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~~~~ei~----~~~~~~~~~~~~~~~~~~~S~g~k~r~~ia 194 (337)
+.+|++++|.||||+|||||+..++...... +..+.|++...... ...++....+.. .. .+.... ....+
T Consensus 729 l~~G~lVlI~G~PG~GKTtLal~lA~~aa~~-g~~VlyiS~Ees~~ql~A~~lGvd~~~L~i---~~-~~~lee-i~~~l 802 (1706)
T 3cmw_A 729 LPMGRIVEIYGPESSGKTTLTLQVIAAAQRE-GKTCAFIDAEHALDPIYARKLGVDIDNLLC---SQ-PDTGEQ-ALEIC 802 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHT-TCCEEEECTTSCCCHHHHHHTTCCGGGCEE---EC-CSSHHH-HHHHH
T ss_pred cCCCceEEEECCCCCCcHHHHHHHHHHHHHc-CCCeEEEeccchHHHHHHHHcCCChhheEE---ec-CCcHHH-HHHHH
Confidence 6789999999999999999999999887654 56787775432210 001111111100 00 111222 22222
Q ss_pred HHH--hhCCcEEEEcCCCCHH----------------HH----HHHHH----HHhcCCeEEEEEcCcc
Q 019702 195 AVE--NHMPEVIIVDEIGTEA----------------EA----HACRS----IAERGVMLIGTAHGEW 236 (337)
Q Consensus 195 ~al--~~~P~vlilDEp~~~l----------------d~----~~l~~----~~~~G~tvi~t~H~~~ 236 (337)
+.+ ...|++|++|++.... .. ..+.. +.+.|++||+++|-..
T Consensus 803 ~~lv~~~~~~lVVIDsLq~l~~~~e~~~~~G~~~~~~q~reis~~Lr~Lk~lAke~gi~VIlinql~r 870 (1706)
T 3cmw_A 803 DALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRM 870 (1706)
T ss_dssp HHHHHHTCCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHHTCEEEEEECEEE
T ss_pred HHHHHccCCCEEEEechhhhccccccccccCccchhHHHHHHHHHHHHHHHHHHHcCCEEEEEecCCC
Confidence 222 3689999999996522 11 12333 2467999999999543
No 259
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=97.48 E-value=5.6e-05 Score=64.70 Aligned_cols=25 Identities=24% Similarity=0.589 Sum_probs=22.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHccccc
Q 019702 124 SILFVGRPGVGKTTVMREIARVLSD 148 (337)
Q Consensus 124 ~v~IiGpnGsGKTTLL~~l~gll~~ 148 (337)
.++|+|+||||||||++.++|...+
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~ 55 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFN 55 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCC
Confidence 6899999999999999999998754
No 260
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.47 E-value=5.1e-05 Score=65.89 Aligned_cols=29 Identities=21% Similarity=0.437 Sum_probs=26.1
Q ss_pred ccCCCEEEEEcCCCCcHHHHHHHHHcccc
Q 019702 119 LHYGKSILFVGRPGVGKTTVMREIARVLS 147 (337)
Q Consensus 119 v~~g~~v~IiGpnGsGKTTLL~~l~gll~ 147 (337)
..+|.+++|+||+||||||+.+.|+..++
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 56789999999999999999999998763
No 261
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.47 E-value=0.00015 Score=67.96 Aligned_cols=28 Identities=14% Similarity=0.272 Sum_probs=24.2
Q ss_pred cccCCCEEEEEcCCCCcHHHHHHHHHcc
Q 019702 118 LLHYGKSILFVGRPGVGKTTVMREIARV 145 (337)
Q Consensus 118 ~v~~g~~v~IiGpnGsGKTTLL~~l~gl 145 (337)
-+.+|..++|.||||+|||||...++..
T Consensus 119 Gi~~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 119 HRYASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEEESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 3566778899999999999999999865
No 262
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.46 E-value=0.00045 Score=56.55 Aligned_cols=30 Identities=20% Similarity=0.328 Sum_probs=25.8
Q ss_pred ccCCCEEEEEcCCCCcHHHHHHHHHccccc
Q 019702 119 LHYGKSILFVGRPGVGKTTVMREIARVLSD 148 (337)
Q Consensus 119 v~~g~~v~IiGpnGsGKTTLL~~l~gll~~ 148 (337)
...+..++|.||+|+|||++.++|......
T Consensus 21 a~~~~~vll~G~~GtGKt~lA~~i~~~~~~ 50 (145)
T 3n70_A 21 SETDIAVWLYGAPGTGRMTGARYLHQFGRN 50 (145)
T ss_dssp TTCCSCEEEESSTTSSHHHHHHHHHHSSTT
T ss_pred hCCCCCEEEECCCCCCHHHHHHHHHHhCCc
Confidence 456778999999999999999999987643
No 263
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=97.45 E-value=4.8e-05 Score=72.97 Aligned_cols=51 Identities=22% Similarity=0.272 Sum_probs=42.1
Q ss_pred EeeEEEEECCccccchh--------------hhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccc
Q 019702 97 IVGLTCRVGRAVSGHID--------------MVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSD 148 (337)
Q Consensus 97 i~~l~~r~~~~~~~~~~--------------~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~ 148 (337)
++++++.|+.... .++ ++.+.+.+|+.++|+||+|+|||||++.|++.++.
T Consensus 136 Fe~ltp~yP~er~-~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~ 200 (422)
T 3ice_A 136 FENLTPLHANSRL-RMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAY 200 (422)
T ss_dssp TTTSCEESCCSBC-CCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHHH
T ss_pred eccccccCCCCcc-ccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHhh
Confidence 5578888876543 355 67777899999999999999999999999998864
No 264
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.44 E-value=3.9e-05 Score=71.96 Aligned_cols=38 Identities=37% Similarity=0.630 Sum_probs=33.9
Q ss_pred hhhhhhcccCCCE--EEEEcCCCCcHHHHHHHHHcccccc
Q 019702 112 IDMVYDLLHYGKS--ILFVGRPGVGKTTVMREIARVLSDE 149 (337)
Q Consensus 112 ~~~l~~~v~~g~~--v~IiGpnGsGKTTLL~~l~gll~~~ 149 (337)
++.++..+..|++ +++.||||+||||+++++++.+.+.
T Consensus 34 ~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~ 73 (340)
T 1sxj_C 34 ITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGK 73 (340)
T ss_dssp HHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 7778888888887 9999999999999999999998653
No 265
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.43 E-value=0.00035 Score=69.17 Aligned_cols=71 Identities=28% Similarity=0.468 Sum_probs=45.8
Q ss_pred cCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEcCCcccccCCCCcccccccchhccCCCcchhHHHHHHHHHhh
Q 019702 120 HYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENH 199 (337)
Q Consensus 120 ~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~~~~ei~~~~~~~~~~~~~~~~~~~~S~g~k~r~~ia~al~~ 199 (337)
.+...++|.||+|+|||+++++++... +..+..+.. .++. ....+ ......+-.+..|...
T Consensus 236 ~~~~~vLL~GppGtGKT~lAraia~~~----~~~fv~vn~-~~l~------~~~~g--------~~~~~~~~~f~~A~~~ 296 (489)
T 3hu3_A 236 KPPRGILLYGPPGTGKTLIARAVANET----GAFFFLING-PEIM------SKLAG--------ESESNLRKAFEEAEKN 296 (489)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHHC----SSEEEEEEH-HHHH------TSCTT--------HHHHHHHHHHHHHHHT
T ss_pred CCCCcEEEECcCCCCHHHHHHHHHHHh----CCCEEEEEc-hHhh------hhhcc--------hhHHHHHHHHHHHHhc
Confidence 445679999999999999999998865 234444331 1110 00000 0112234567777888
Q ss_pred CCcEEEEcCC
Q 019702 200 MPEVIIVDEI 209 (337)
Q Consensus 200 ~P~vlilDEp 209 (337)
.|.+|++||+
T Consensus 297 ~p~iLfLDEI 306 (489)
T 3hu3_A 297 APAIIFIDEL 306 (489)
T ss_dssp CSEEEEEESH
T ss_pred CCcEEEecch
Confidence 9999999998
No 266
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.43 E-value=8.2e-05 Score=63.53 Aligned_cols=32 Identities=34% Similarity=0.353 Sum_probs=25.9
Q ss_pred hhhhcccCCCEEEEEcCCCCcHHHHHHHHHcc
Q 019702 114 MVYDLLHYGKSILFVGRPGVGKTTVMREIARV 145 (337)
Q Consensus 114 ~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gl 145 (337)
++++...++..++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 34566777889999999999999999999986
No 267
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=97.42 E-value=0.00044 Score=61.02 Aligned_cols=108 Identities=17% Similarity=0.169 Sum_probs=60.9
Q ss_pred cCCCEEEEEcCCCCcHHH-HHHHHHccccccCCCeEEEEc----CCc---ccccCCCCcccccccchhccCCCcchhHHH
Q 019702 120 HYGKSILFVGRPGVGKTT-VMREIARVLSDEFQKRVVIVD----TSN---EIGGDGDIPHSAIGTARRMQVPEPSLQHKV 191 (337)
Q Consensus 120 ~~g~~v~IiGpnGsGKTT-LL~~l~gll~~~~~~~i~~v~----~~~---ei~~~~~~~~~~~~~~~~~~~~S~g~k~r~ 191 (337)
..|.+..|.||-|||||| |++.+-.+... +.++.++. .+. .+....+....... +.+...-
T Consensus 26 ~~G~I~vitG~M~sGKTT~Llr~~~r~~~~--g~kvli~kp~~D~R~~~~~I~Sr~G~~~~a~~------v~~~~di--- 94 (219)
T 3e2i_A 26 HSGWIECITGSMFSGKSEELIRRLRRGIYA--KQKVVVFKPAIDDRYHKEKVVSHNGNAIEAIN------ISKASEI--- 94 (219)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHHHHHHT--TCCEEEEEEC-----------CBTTBCCEEEE------ESSGGGG---
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHc--CCceEEEEeccCCcchhhhHHHhcCCceeeEE------eCCHHHH---
Confidence 458899999999999999 77887666543 34454431 110 11100000000000 0000000
Q ss_pred HHHHHHhhCCcEEEEcCC--CCHHHHHHHHHHHhcCCeEEEEEcCcchhHH
Q 019702 192 MIEAVENHMPEVIIVDEI--GTEAEAHACRSIAERGVMLIGTAHGEWLENI 240 (337)
Q Consensus 192 ~ia~al~~~P~vlilDEp--~~~ld~~~l~~~~~~G~tvi~t~H~~~~~~~ 240 (337)
...+..++++|++||. ++..-++.+..+++.|+.|+...=+.++-..
T Consensus 95 --~~~i~~~~dvV~IDEaQFf~~~~v~~l~~la~~gi~Vi~~GLd~DF~~~ 143 (219)
T 3e2i_A 95 --MTHDLTNVDVIGIDEVQFFDDEIVSIVEKLSADGHRVIVAGLDMDFRGE 143 (219)
T ss_dssp --GGSCCTTCSEEEECCGGGSCTHHHHHHHHHHHTTCEEEEEEESBCTTSC
T ss_pred --HHHHhcCCCEEEEechhcCCHHHHHHHHHHHHCCCEEEEeecccccccC
Confidence 0001358899999998 3333467777778889999998887775443
No 268
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=97.41 E-value=0.00019 Score=70.35 Aligned_cols=36 Identities=33% Similarity=0.502 Sum_probs=28.7
Q ss_pred hhhhhcccCCC--EEEEEcCCCCcHHHHHHHHHccccc
Q 019702 113 DMVYDLLHYGK--SILFVGRPGVGKTTVMREIARVLSD 148 (337)
Q Consensus 113 ~~l~~~v~~g~--~v~IiGpnGsGKTTLL~~l~gll~~ 148 (337)
..+...+..|. .++|.||+|+||||+++.|+.....
T Consensus 39 ~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~~ 76 (447)
T 3pvs_A 39 KPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANA 76 (447)
T ss_dssp SHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhCC
Confidence 44555566665 5999999999999999999998743
No 269
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.41 E-value=7.9e-05 Score=61.85 Aligned_cols=24 Identities=29% Similarity=0.470 Sum_probs=21.3
Q ss_pred CEEEEEcCCCCcHHHHHHHHHccc
Q 019702 123 KSILFVGRPGVGKTTVMREIARVL 146 (337)
Q Consensus 123 ~~v~IiGpnGsGKTTLL~~l~gll 146 (337)
.+.+|+|||||||||++.+|.-.+
T Consensus 24 g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 489999999999999999998544
No 270
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.40 E-value=7.2e-05 Score=64.54 Aligned_cols=21 Identities=33% Similarity=0.463 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 019702 124 SILFVGRPGVGKTTVMREIAR 144 (337)
Q Consensus 124 ~v~IiGpnGsGKTTLL~~l~g 144 (337)
.++|+|+|||||||+++.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999999
No 271
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.40 E-value=0.00053 Score=76.73 Aligned_cols=112 Identities=20% Similarity=0.229 Sum_probs=65.9
Q ss_pred ccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEcCCccccc----CCCCcccccccchhccCCCcchhHHHHHH
Q 019702 119 LHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGG----DGDIPHSAIGTARRMQVPEPSLQHKVMIE 194 (337)
Q Consensus 119 v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~~~~ei~~----~~~~~~~~~~~~~~~~~~S~g~k~r~~ia 194 (337)
+.+|.++.|.||||||||||+..++...... +..+.|++....... ..++....+.. ....+. ++ -..++
T Consensus 380 l~~G~lilI~G~pGsGKTtLaLq~a~~~~~~-G~~vlyis~E~s~~~~~a~~lGvd~~~L~i---~~~~~~-e~-~l~~l 453 (1706)
T 3cmw_A 380 LPMGRIVEIYGPESSGKTTLTLQVIAAAQRE-GKTCAFIDAEHALDPIYARKLGVDIDNLLC---SQPDTG-EQ-ALEIC 453 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHT-TCCEEEECTTSCCCHHHHHHTTCCGGGCEE---ECCSSH-HH-HHHHH
T ss_pred cCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchHHHHHHHcCCCHHHeEE---cCCCCH-HH-HHHHH
Confidence 5589999999999999999998887766543 677888865332210 01111111110 111122 22 22233
Q ss_pred HH--HhhCCcEEEEcCCCCHH----------------HH----HHHHHH----HhcCCeEEEEEcCcc
Q 019702 195 AV--ENHMPEVIIVDEIGTEA----------------EA----HACRSI----AERGVMLIGTAHGEW 236 (337)
Q Consensus 195 ~a--l~~~P~vlilDEp~~~l----------------d~----~~l~~~----~~~G~tvi~t~H~~~ 236 (337)
.. ....|+++++|.++.-. .. ..+..+ .+.|++||+++|-..
T Consensus 454 ~~lv~~~~~~lVVIDSL~al~~~~e~e~~~g~~~~~~q~r~~s~~Lr~L~~~ak~~~v~VI~inQl~~ 521 (1706)
T 3cmw_A 454 DALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRM 521 (1706)
T ss_dssp HHHHHHTCCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHHTCEEEEEECEEE
T ss_pred HHHHHhcCCCEEEECCHHHhhccccccccccccchhHHHHHHHHHHHHHHHHHHHcCCEEEEEeeccc
Confidence 32 34689999999986521 11 222232 467999999998643
No 272
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=97.34 E-value=9.6e-05 Score=63.42 Aligned_cols=24 Identities=25% Similarity=0.582 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcccc
Q 019702 124 SILFVGRPGVGKTTVMREIARVLS 147 (337)
Q Consensus 124 ~v~IiGpnGsGKTTLL~~l~gll~ 147 (337)
.++|+|+||||||||++.++|...
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~~ 30 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNEF 30 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCCC
Confidence 579999999999999999999753
No 273
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.34 E-value=0.00013 Score=62.30 Aligned_cols=34 Identities=24% Similarity=0.423 Sum_probs=27.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEE
Q 019702 123 KSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIV 157 (337)
Q Consensus 123 ~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v 157 (337)
..++|+|++|||||||++.|++.+.+. +.++.++
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~-g~~v~~i 40 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCAR-GIRPGLI 40 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhcccc-CCceeEE
Confidence 478999999999999999999987654 4445444
No 274
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.33 E-value=0.00046 Score=78.17 Aligned_cols=113 Identities=17% Similarity=0.230 Sum_probs=64.7
Q ss_pred ccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEcCCcccccC----CCCcccccccchhccCCCcchhH-HHHH
Q 019702 119 LHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGD----GDIPHSAIGTARRMQVPEPSLQH-KVMI 193 (337)
Q Consensus 119 v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~~~~ei~~~----~~~~~~~~~~~~~~~~~S~g~k~-r~~i 193 (337)
+++|+.+.|.||+|+|||||...++-..... +.++.|++....+... .+++-..+. +.....+++. +..-
T Consensus 1424 i~~g~~vll~GppGtGKT~LA~ala~ea~~~-G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~----v~~~~~~E~~l~~~~ 1498 (2050)
T 3cmu_A 1424 LPMGRIVEIYGPESSGKTTLTLQVIAAAQRE-GKTCAFIDAEHALDPIYARKLGVDIDNLL----CSQPDTGEQALEICD 1498 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHHTT-TCCEEEECTTSCCCHHHHHHTTCCTTTCE----EECCSSHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHc-CCcEEEEEcccccCHHHHHHcCCCchhce----eecCChHHHHHHHHH
Confidence 6689999999999999999999887755433 6788888654322110 011100010 0111223322 2222
Q ss_pred HHHHhhCCcEEEEcCCCC--H--------------HH----HHH----HHHHHhcCCeEEEEEcCcc
Q 019702 194 EAVENHMPEVIIVDEIGT--E--------------AE----AHA----CRSIAERGVMLIGTAHGEW 236 (337)
Q Consensus 194 a~al~~~P~vlilDEp~~--~--------------ld----~~~----l~~~~~~G~tvi~t~H~~~ 236 (337)
..+....|++|++||..+ . +. .++ ...+.++|.+||+|.....
T Consensus 1499 ~lvr~~~~~lVVIDsi~al~p~~~~~g~~~~~~~~~~~R~lsqlL~~L~~~~~~~~v~VI~tNq~~~ 1565 (2050)
T 3cmu_A 1499 ALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRM 1565 (2050)
T ss_dssp HHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECEEE
T ss_pred HHHhcCCCCEEEEcChhHhcccccccccccccccchHHHHHHHHHHHHHHHHHhCCcEEEEEccccc
Confidence 233457899999999842 1 11 112 2233567888888876544
No 275
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.32 E-value=7.8e-05 Score=78.29 Aligned_cols=74 Identities=23% Similarity=0.382 Sum_probs=47.8
Q ss_pred cccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEcCCcccccCCCCcccccccchhccCCCcchhHHHHHHHHH
Q 019702 118 LLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVE 197 (337)
Q Consensus 118 ~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~~~~ei~~~~~~~~~~~~~~~~~~~~S~g~k~r~~ia~al 197 (337)
.+.++..++|.||||+|||||.++|++.+... +..+. ..++ ....+ .......+..+..+.
T Consensus 507 ~~~~~~~vLL~GppGtGKT~Lakala~~~~~~----~i~v~-~~~l------~~~~~--------g~~~~~i~~~f~~a~ 567 (806)
T 1ypw_A 507 GMTPSKGVLFYGPPGCGKTLLAKAIANECQAN----FISIK-GPEL------LTMWF--------GESEANVREIFDKAR 567 (806)
T ss_dssp CCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCC----CCCCC-CSSS------TTCCT--------TTSSHHHHHHHHHHH
T ss_pred CCCCCceeEEECCCCCCHHHHHHHHHHHhCCC----EEEEe-chHh------hhhhc--------CccHHHHHHHHHHHH
Confidence 34578889999999999999999999987432 11111 1111 00001 111223445677777
Q ss_pred hhCCcEEEEcCCC
Q 019702 198 NHMPEVIIVDEIG 210 (337)
Q Consensus 198 ~~~P~vlilDEp~ 210 (337)
...|.+|++||.-
T Consensus 568 ~~~p~vl~iDEid 580 (806)
T 1ypw_A 568 QAAPCVLFFDELD 580 (806)
T ss_dssp HHCSBCCCCSSHH
T ss_pred hcCCeEEEEEChh
Confidence 8899999999973
No 276
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.29 E-value=0.00011 Score=62.18 Aligned_cols=27 Identities=37% Similarity=0.756 Sum_probs=23.3
Q ss_pred cCCCEEEEEcCCCCcHHHHHHHHHccc
Q 019702 120 HYGKSILFVGRPGVGKTTVMREIARVL 146 (337)
Q Consensus 120 ~~g~~v~IiGpnGsGKTTLL~~l~gll 146 (337)
..|.+++|+|++||||||+.+.|+..+
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 357789999999999999999998654
No 277
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.27 E-value=0.00059 Score=60.42 Aligned_cols=25 Identities=28% Similarity=0.377 Sum_probs=22.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHccccc
Q 019702 124 SILFVGRPGVGKTTVMREIARVLSD 148 (337)
Q Consensus 124 ~v~IiGpnGsGKTTLL~~l~gll~~ 148 (337)
.++|+|++|+|||||++.|+|....
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~ 55 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVF 55 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCS
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcC
Confidence 5899999999999999999997654
No 278
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.27 E-value=0.00018 Score=75.14 Aligned_cols=72 Identities=26% Similarity=0.444 Sum_probs=47.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEcCCcccccCCCCcccccccchhccCCCcchhHHHHHHHHHhhC
Q 019702 121 YGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHM 200 (337)
Q Consensus 121 ~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~~~~ei~~~~~~~~~~~~~~~~~~~~S~g~k~r~~ia~al~~~ 200 (337)
+...++|.||||+|||||.+++++.+. ..+..++.. ++.. .. ......+-|-.+..|..+.
T Consensus 237 ~p~GILL~GPPGTGKT~LAraiA~elg----~~~~~v~~~-~l~s------k~--------~gese~~lr~lF~~A~~~~ 297 (806)
T 3cf2_A 237 PPRGILLYGPPGTGKTLIARAVANETG----AFFFLINGP-EIMS------KL--------AGESESNLRKAFEEAEKNA 297 (806)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHTTTT----CEEEEEEHH-HHHS------SC--------TTHHHHHHHHHHHHHTTSC
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC----CeEEEEEhH-Hhhc------cc--------chHHHHHHHHHHHHHHHcC
Confidence 345799999999999999999998763 344444321 1100 00 0011234455778888899
Q ss_pred CcEEEEcCCCC
Q 019702 201 PEVIIVDEIGT 211 (337)
Q Consensus 201 P~vlilDEp~~ 211 (337)
|.||++||.-+
T Consensus 298 PsIIfIDEiDa 308 (806)
T 3cf2_A 298 PAIIFIDELDA 308 (806)
T ss_dssp SEEEEEESGGG
T ss_pred CeEEEEehhcc
Confidence 99999999843
No 279
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.27 E-value=0.00015 Score=70.64 Aligned_cols=43 Identities=23% Similarity=0.273 Sum_probs=36.2
Q ss_pred hhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEcC
Q 019702 114 MVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDT 159 (337)
Q Consensus 114 ~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~~ 159 (337)
++++. ++++++++|++||||||++..|++.+.+. ++++.+++.
T Consensus 92 ~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~-g~~Vllvd~ 134 (425)
T 2ffh_A 92 LPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGK-GRRPLLVAA 134 (425)
T ss_dssp CCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTT-TCCEEEEEC
T ss_pred cccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEeec
Confidence 34444 78899999999999999999999999876 678887764
No 280
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=97.26 E-value=0.0013 Score=64.17 Aligned_cols=117 Identities=18% Similarity=0.155 Sum_probs=70.7
Q ss_pred hhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEcCC--c-cccc-----CCCCcccccccchhccC-
Q 019702 112 IDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTS--N-EIGG-----DGDIPHSAIGTARRMQV- 182 (337)
Q Consensus 112 ~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~~~--~-ei~~-----~~~~~~~~~~~~~~~~~- 182 (337)
++.+..-+.+|+++.|.|+||+|||||+..++...... +..+.++.-. . ++.. ..+++...+ +.+.
T Consensus 187 LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~a~~-g~~vl~fSlEms~~ql~~R~~~~~~~i~~~~l----~~g~~ 261 (444)
T 3bgw_A 187 LDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDN-DDVVNLHSLEMGKKENIKRLIVTAGSINAQKI----KAARR 261 (444)
T ss_dssp HHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHHHHT-TCEEEEECSSSCTTHHHHHHHHHHSCCCHHHH----HHTGG
T ss_pred HHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHc-CCEEEEEECCCCHHHHHHHHHHHHcCCCHHHH----hcccC
Confidence 44443347899999999999999999998888766543 5677776422 1 1110 011111111 1122
Q ss_pred -CCcchhHHHHHHHHHhhCCcEEEEcCCCCHHH-H-HHHHHHH-hcCCe--EEEEEc
Q 019702 183 -PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAE-A-HACRSIA-ERGVM--LIGTAH 233 (337)
Q Consensus 183 -~S~g~k~r~~ia~al~~~P~vlilDEp~~~ld-~-~~l~~~~-~~G~t--vi~t~H 233 (337)
++..+..++.-+.....+..+.+.|+|....+ + ..+..+. +.|.. +|++-+
T Consensus 262 ~l~~~~~~~l~~a~~~l~~~~l~i~d~~~~s~~~i~~~ir~l~~~~~~~~~lIVID~ 318 (444)
T 3bgw_A 262 DFASEDWGKLSMAIGEISNSNINIFDKAGQSVNYIWSKTRQTKRKNPGKRVIVMIDY 318 (444)
T ss_dssp GTCCSCHHHHHHHHHHHHTSCEEEECCSSCBHHHHHHHHHHHHHHSCSSCEEEEEEC
T ss_pred CCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEec
Confidence 56667777776666666778888898854333 2 3344454 34777 777653
No 281
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.26 E-value=0.00011 Score=69.62 Aligned_cols=37 Identities=22% Similarity=0.583 Sum_probs=32.6
Q ss_pred chhhhhhcccCCCE--EEEEcCCCCcHHHHHHHHHcccc
Q 019702 111 HIDMVYDLLHYGKS--ILFVGRPGVGKTTVMREIARVLS 147 (337)
Q Consensus 111 ~~~~l~~~v~~g~~--v~IiGpnGsGKTTLL~~l~gll~ 147 (337)
.++.+++.+++|+. ++|+|++||||||+.++|++.+.
T Consensus 11 il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 11 VLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp HHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 36777888888887 99999999999999999999875
No 282
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.25 E-value=0.00013 Score=60.73 Aligned_cols=24 Identities=25% Similarity=0.306 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcccc
Q 019702 124 SILFVGRPGVGKTTVMREIARVLS 147 (337)
Q Consensus 124 ~v~IiGpnGsGKTTLL~~l~gll~ 147 (337)
+++|+|++||||||+.+.|+..+.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999998764
No 283
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.25 E-value=0.00026 Score=66.79 Aligned_cols=26 Identities=38% Similarity=0.438 Sum_probs=23.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHcccc
Q 019702 122 GKSILFVGRPGVGKTTVMREIARVLS 147 (337)
Q Consensus 122 g~~v~IiGpnGsGKTTLL~~l~gll~ 147 (337)
+..++|.||+|+|||||++.++..+.
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~~~~ 70 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFNEIE 70 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 45899999999999999999998763
No 284
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.24 E-value=0.00011 Score=63.31 Aligned_cols=25 Identities=36% Similarity=0.482 Sum_probs=22.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHccc
Q 019702 122 GKSILFVGRPGVGKTTVMREIARVL 146 (337)
Q Consensus 122 g~~v~IiGpnGsGKTTLL~~l~gll 146 (337)
..+++|+|++||||||+.+.|++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999999876
No 285
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.24 E-value=0.00037 Score=56.99 Aligned_cols=28 Identities=18% Similarity=0.186 Sum_probs=23.8
Q ss_pred ccCCCEEEEEcCCCCcHHHHHHHHHccc
Q 019702 119 LHYGKSILFVGRPGVGKTTVMREIARVL 146 (337)
Q Consensus 119 v~~g~~v~IiGpnGsGKTTLL~~l~gll 146 (337)
...+..++|.||+|+|||++.++|....
T Consensus 24 ~~~~~~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 24 AKRTSPVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp HTCSSCEEEEEETTCCHHHHHGGGCCTT
T ss_pred hCCCCcEEEECCCCccHHHHHHHHHHhC
Confidence 4456789999999999999999888754
No 286
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.24 E-value=0.00017 Score=60.68 Aligned_cols=26 Identities=27% Similarity=0.515 Sum_probs=23.6
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHcccc
Q 019702 122 GKSILFVGRPGVGKTTVMREIARVLS 147 (337)
Q Consensus 122 g~~v~IiGpnGsGKTTLL~~l~gll~ 147 (337)
+.++.|+|++||||||+.+.|+..+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 56899999999999999999998764
No 287
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=97.23 E-value=0.00069 Score=66.31 Aligned_cols=113 Identities=16% Similarity=0.091 Sum_probs=54.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEcCCcccccCCCCcccccccchhcc---CCCcchhHHHHHHHHHhhC
Q 019702 124 SILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQ---VPEPSLQHKVMIEAVENHM 200 (337)
Q Consensus 124 ~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~~~~ei~~~~~~~~~~~~~~~~~~---~~S~g~k~r~~ia~al~~~ 200 (337)
.++|+|.+|+|||||++.|+|--........++-.+...... ......+......+ ..++.+.+....+......
T Consensus 25 ~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~--~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ 102 (456)
T 4dcu_A 25 VVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSA--EWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDE 102 (456)
T ss_dssp EEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEEC--TTCSSCCEEECCCC------CCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEE--EECCceEEEEECCCCCCcchHHHHHHHHHHHhhHhh
Confidence 799999999999999999998532110000000000000000 00000000000000 0011244445556666677
Q ss_pred CcEEEEcCC----CCHHHHHHHHHHHhcCCeEEEEEcCcchh
Q 019702 201 PEVIIVDEI----GTEAEAHACRSIAERGVMLIGTAHGEWLE 238 (337)
Q Consensus 201 P~vlilDEp----~~~ld~~~l~~~~~~G~tvi~t~H~~~~~ 238 (337)
+|++|+... ....|.+....+.+.+..++++.+-.+..
T Consensus 103 ad~il~VvD~~~~~~~~d~~l~~~l~~~~~pvilV~NK~D~~ 144 (456)
T 4dcu_A 103 ADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNT 144 (456)
T ss_dssp CSEEEEEEESSSCSCHHHHHHHHHHTTCCSCEEEEEECC---
T ss_pred CCEEEEEEeCCCCCChHHHHHHHHHHHcCCCEEEEEECccch
Confidence 887666533 23455666666667788888887766543
No 288
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=97.23 E-value=0.0019 Score=57.51 Aligned_cols=107 Identities=17% Similarity=0.134 Sum_probs=56.0
Q ss_pred cCCCEEEEEcCCCCcHHHHHH-HHHccccccCCCeEEEEcC--CcccccCCCCcccccccchhccCCCcchhHHHHHHHH
Q 019702 120 HYGKSILFVGRPGVGKTTVMR-EIARVLSDEFQKRVVIVDT--SNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAV 196 (337)
Q Consensus 120 ~~g~~v~IiGpnGsGKTTLL~-~l~gll~~~~~~~i~~v~~--~~ei~~~~~~~~~~~~~~~~~~~~S~g~k~r~~ia~a 196 (337)
..|.+..+.|+-||||||.|- .+.+.... +.++.++.- ....+ .....+..+. .....+.+... .+.
T Consensus 17 ~~g~l~v~~G~MgsGKTT~lL~~~~r~~~~--g~kvli~kp~~D~Ryg-~~i~sr~G~~-~~a~~i~~~~d----i~~-- 86 (234)
T 2orv_A 17 TRGQIQVILGPMFSGKSTELMRRVRRFQIA--QYKCLVIKYAKDTRYS-SSFCTHDRNT-MEALPACLLRD----VAQ-- 86 (234)
T ss_dssp -CCEEEEEECCTTSCHHHHHHHHHHHHHTT--TCCEEEEEETTCCCC-------------CEEEEESSGGG----GHH--
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHHHHHC--CCeEEEEeecCCccch-HHHHhhcCCe-eEEEecCCHHH----HHH--
Confidence 358899999999999997654 44444322 555655421 11111 1001111000 00011111111 111
Q ss_pred HhhCCcEEEEcCCCCHHHH-HHHHHHHhcCCeEEEEEcCcc
Q 019702 197 ENHMPEVIIVDEIGTEAEA-HACRSIAERGVMLIGTAHGEW 236 (337)
Q Consensus 197 l~~~P~vlilDEp~~~ld~-~~l~~~~~~G~tvi~t~H~~~ 236 (337)
...+.|+|++||.---.+. +.+..+.+.|+.||++.++.+
T Consensus 87 ~~~~~dvViIDEaQF~~~v~el~~~l~~~gi~VI~~GL~~D 127 (234)
T 2orv_A 87 EALGVAVIGIDEGQFFPDIVEFCEAMANAGKTVIVAALDGT 127 (234)
T ss_dssp HHTTCSEEEESSGGGCTTHHHHHHHHHHTTCEEEEECCSBC
T ss_pred HhccCCEEEEEchhhhhhHHHHHHHHHhCCCEEEEEecccc
Confidence 1267899999999332233 445556678999999999954
No 289
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.22 E-value=0.00023 Score=69.74 Aligned_cols=73 Identities=21% Similarity=0.246 Sum_probs=44.5
Q ss_pred cCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEcCCcccccCCCCcccccccchhccCCCcchhHHHHHHHH---
Q 019702 120 HYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAV--- 196 (337)
Q Consensus 120 ~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~~~~ei~~~~~~~~~~~~~~~~~~~~S~g~k~r~~ia~a--- 196 (337)
.++..+++.||||+||||+.++++..+... ..+..+... ++. ....+ ..++.+-.+..|
T Consensus 61 ~~~~~iLl~GppGtGKT~la~ala~~l~~~--~~~~~~~~~-~~~------~~~~~---------~~~~~~~~f~~a~~~ 122 (456)
T 2c9o_A 61 MAGRAVLLAGPPGTGKTALALAIAQELGSK--VPFCPMVGS-EVY------STEIK---------KTEVLMENFRRAIGL 122 (456)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHHHHCTT--SCEEEEEGG-GGC------CSSSC---------HHHHHHHHHHHTEEE
T ss_pred CCCCeEEEECCCcCCHHHHHHHHHHHhCCC--ceEEEEeHH-HHH------HHhhh---------hhHHHHHHHHHHHhh
Confidence 345689999999999999999999987542 233333221 110 00011 111223344444
Q ss_pred HhhCCcEEEEcCCC
Q 019702 197 ENHMPEVIIVDEIG 210 (337)
Q Consensus 197 l~~~P~vlilDEp~ 210 (337)
....|.+|++||..
T Consensus 123 ~~~~~~il~iDEid 136 (456)
T 2c9o_A 123 RIKETKEVYEGEVT 136 (456)
T ss_dssp EEEEEEEEEEEEEE
T ss_pred hhcCCcEEEEechh
Confidence 45679999999983
No 290
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.17 E-value=0.00025 Score=60.32 Aligned_cols=35 Identities=31% Similarity=0.256 Sum_probs=28.7
Q ss_pred CEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEc
Q 019702 123 KSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD 158 (337)
Q Consensus 123 ~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~ 158 (337)
..++|+|++|||||||+..|+..+... +.++.++.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~-g~~v~~ik 39 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVRE-GWRVGTVK 39 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhc-CCeeeEEE
Confidence 378999999999999999999988754 55666654
No 291
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.16 E-value=0.0011 Score=60.63 Aligned_cols=36 Identities=33% Similarity=0.565 Sum_probs=27.0
Q ss_pred hhhhhhcccCCC--EEEEEcCCCCcHHHHHHHHHcccc
Q 019702 112 IDMVYDLLHYGK--SILFVGRPGVGKTTVMREIARVLS 147 (337)
Q Consensus 112 ~~~l~~~v~~g~--~v~IiGpnGsGKTTLL~~l~gll~ 147 (337)
.+.+...+..|. .++|.||+|+||||+++.++..+.
T Consensus 30 ~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~ 67 (323)
T 1sxj_B 30 IDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELL 67 (323)
T ss_dssp HHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhc
Confidence 344444454443 399999999999999999998763
No 292
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=97.16 E-value=0.0011 Score=59.33 Aligned_cols=23 Identities=30% Similarity=0.521 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHccc
Q 019702 124 SILFVGRPGVGKTTVMREIARVL 146 (337)
Q Consensus 124 ~v~IiGpnGsGKTTLL~~l~gll 146 (337)
.++|+|.+|+|||||++.|.|.-
T Consensus 23 ~I~lvG~~g~GKSSlin~l~~~~ 45 (247)
T 3lxw_A 23 RLILVGRTGAGKSATGNSILGQR 45 (247)
T ss_dssp EEEEESSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 68999999999999999999864
No 293
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.16 E-value=0.0002 Score=60.07 Aligned_cols=26 Identities=27% Similarity=0.585 Sum_probs=22.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHccc
Q 019702 121 YGKSILFVGRPGVGKTTVMREIARVL 146 (337)
Q Consensus 121 ~g~~v~IiGpnGsGKTTLL~~l~gll 146 (337)
+|..++|+|+||+|||||++.+++..
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 46789999999999999999999864
No 294
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.14 E-value=0.0012 Score=74.77 Aligned_cols=112 Identities=19% Similarity=0.235 Sum_probs=66.6
Q ss_pred ccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEcCCccccc----CCCCcccccccchhccCCCcchhHHHHHH
Q 019702 119 LHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGG----DGDIPHSAIGTARRMQVPEPSLQHKVMIE 194 (337)
Q Consensus 119 v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~~~~ei~~----~~~~~~~~~~~~~~~~~~S~g~k~r~~ia 194 (337)
+++|.++.|.||||+|||||+..++...... +..+.|++....... ..++....+.. ....+ . .+-..++
T Consensus 380 l~~G~lilI~G~pGsGKTtLaLqia~~~a~~-G~~vlyis~E~s~~~~~a~~lGvd~~~L~I---~~~~~-~-e~il~~~ 453 (2050)
T 3cmu_A 380 LPMGRIVEIYGPESSGKTTLTLQVIAAAQRE-GKTCAFIDAEHALDPIYARKLGVDIDNLLC---SQPDT-G-EQALEIC 453 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHHTT-TCCEEEECTTSCCCHHHHHHTTCCTTTCEE---ECCSS-H-HHHHHHH
T ss_pred ccCCcEEEEEeCCCCCHHHHHHHHHHHHHhc-CCeEEEEEcCCCHHHHHHHHcCCCHHHeEE---eCCCC-H-HHHHHHH
Confidence 6789999999999999999999888776543 567888865432210 00111111100 01111 1 2223344
Q ss_pred HHH--hhCCcEEEEcCCCCHH----------------HH----HHHHHH----HhcCCeEEEEEcCcc
Q 019702 195 AVE--NHMPEVIIVDEIGTEA----------------EA----HACRSI----AERGVMLIGTAHGEW 236 (337)
Q Consensus 195 ~al--~~~P~vlilDEp~~~l----------------d~----~~l~~~----~~~G~tvi~t~H~~~ 236 (337)
+.+ ...|++|++|....-. .. ..+..+ .+.|++||+++|-..
T Consensus 454 ~~lv~~~~~~lIVIDSL~al~~~~e~eg~~Gd~~~~~q~R~is~~Lr~L~~lake~~i~VIlinQl~~ 521 (2050)
T 3cmu_A 454 DALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRM 521 (2050)
T ss_dssp HHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECCEE
T ss_pred HHHHHhcCCcEEEECCHHHhhcccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCeEEEEeeccc
Confidence 433 4689999999985421 11 223333 466999999999654
No 295
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.13 E-value=0.00025 Score=59.96 Aligned_cols=26 Identities=35% Similarity=0.483 Sum_probs=23.6
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHcccc
Q 019702 122 GKSILFVGRPGVGKTTVMREIARVLS 147 (337)
Q Consensus 122 g~~v~IiGpnGsGKTTLL~~l~gll~ 147 (337)
|.++.|.|++||||||+.+.|+..+.
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 56899999999999999999998765
No 296
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=97.12 E-value=0.00042 Score=67.57 Aligned_cols=37 Identities=30% Similarity=0.495 Sum_probs=31.7
Q ss_pred CEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEcCC
Q 019702 123 KSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTS 160 (337)
Q Consensus 123 ~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~~~ 160 (337)
.+++|+|++|+||||++..|++.+... +.++.+++..
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~~-G~kVllv~~D 136 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKR-GLKPALIAAD 136 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHH-HCCEEEECCS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEEecc
Confidence 589999999999999999999998765 6778877653
No 297
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=97.12 E-value=0.0012 Score=62.00 Aligned_cols=37 Identities=35% Similarity=0.567 Sum_probs=28.3
Q ss_pred hhhhhhcccCCC---EEEEEcCCCCcHHHHHHHHHccccc
Q 019702 112 IDMVYDLLHYGK---SILFVGRPGVGKTTVMREIARVLSD 148 (337)
Q Consensus 112 ~~~l~~~v~~g~---~v~IiGpnGsGKTTLL~~l~gll~~ 148 (337)
...+...+..|. .++|.||+|+||||+++.++..+..
T Consensus 25 ~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~~ 64 (373)
T 1jr3_A 25 LTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 (373)
T ss_dssp HHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 344444455554 5899999999999999999987754
No 298
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=97.12 E-value=0.00029 Score=67.36 Aligned_cols=40 Identities=20% Similarity=0.334 Sum_probs=32.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEcCCc
Q 019702 121 YGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSN 161 (337)
Q Consensus 121 ~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~~~~ 161 (337)
.+..++|+|||||||||+++.++....+. +.++.++|...
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~-~~~~~~~D~~~ 73 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQ-GSRVIIIDPER 73 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTT-TCCEEEEESSC
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHC-CCEEEEEeCCc
Confidence 46789999999999999999999887654 56676666443
No 299
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=97.12 E-value=0.0023 Score=63.22 Aligned_cols=47 Identities=19% Similarity=0.135 Sum_probs=34.6
Q ss_pred hhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEc
Q 019702 112 IDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD 158 (337)
Q Consensus 112 ~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~ 158 (337)
++.+..-+.+|++++|.|+||+|||||+..++-......+..+.++.
T Consensus 232 LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s 278 (503)
T 1q57_A 232 INDKTLGARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAM 278 (503)
T ss_dssp HHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEE
T ss_pred hhHhhcccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEe
Confidence 44443347899999999999999999998887665433245677664
No 300
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=97.11 E-value=0.0022 Score=59.59 Aligned_cols=25 Identities=44% Similarity=0.648 Sum_probs=22.2
Q ss_pred CEEEEEcCCCCcHHHHHHHHHcccc
Q 019702 123 KSILFVGRPGVGKTTVMREIARVLS 147 (337)
Q Consensus 123 ~~v~IiGpnGsGKTTLL~~l~gll~ 147 (337)
..++|.||+|+||||+++.++....
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~~~ 80 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYEMS 80 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CeEEEECcCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999988753
No 301
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.11 E-value=0.00025 Score=60.23 Aligned_cols=27 Identities=33% Similarity=0.492 Sum_probs=23.8
Q ss_pred cCCCEEEEEcCCCCcHHHHHHHHHccc
Q 019702 120 HYGKSILFVGRPGVGKTTVMREIARVL 146 (337)
Q Consensus 120 ~~g~~v~IiGpnGsGKTTLL~~l~gll 146 (337)
..+.++.|+|++||||||+.+.|+..+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 356789999999999999999998765
No 302
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.10 E-value=0.001 Score=70.21 Aligned_cols=35 Identities=37% Similarity=0.661 Sum_probs=28.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEc
Q 019702 123 KSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD 158 (337)
Q Consensus 123 ~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~ 158 (337)
..++|.||+|+|||++.++|+..+... +..++.++
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~~~-~~~~i~i~ 623 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLFDT-EEAMIRID 623 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHHSS-GGGEEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCC-CCcEEEEe
Confidence 489999999999999999999988543 34555554
No 303
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.10 E-value=0.00024 Score=58.78 Aligned_cols=19 Identities=37% Similarity=0.691 Sum_probs=18.2
Q ss_pred EEEEEcCCCCcHHHHHHHH
Q 019702 124 SILFVGRPGVGKTTVMREI 142 (337)
Q Consensus 124 ~v~IiGpnGsGKTTLL~~l 142 (337)
+++|+||+||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
No 304
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.07 E-value=0.00084 Score=65.98 Aligned_cols=118 Identities=19% Similarity=0.310 Sum_probs=60.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHccccccC------CCeEEEEcCCcccccCCCCcccccccchhccCCCcchhHHHHHH
Q 019702 121 YGKSILFVGRPGVGKTTVMREIARVLSDEF------QKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIE 194 (337)
Q Consensus 121 ~g~~v~IiGpnGsGKTTLL~~l~gll~~~~------~~~i~~v~~~~ei~~~~~~~~~~~~~~~~~~~~S~g~k~r~~ia 194 (337)
....++|+||||+||||+++.++..+.... +..+..++.. . ...+.. ..+.+-.+.
T Consensus 200 ~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~--------------~--~~~g~~--e~~~~~~~~ 261 (468)
T 3pxg_A 200 TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG--------------T--KYRGEF--EDRLKKVMD 261 (468)
T ss_dssp SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC----------------------------CTTHHHHHH
T ss_pred CCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC--------------c--cccchH--HHHHHHHHH
Confidence 345889999999999999999999874320 1112211111 0 000000 112233455
Q ss_pred HHHhhCCcEEEEcCCCCHHHH-HHHHHHHhcC-CeEEEEEcCcchhHHh-hchHHHHHhcCceEEEecCHH
Q 019702 195 AVENHMPEVIIVDEIGTEAEA-HACRSIAERG-VMLIGTAHGEWLENII-KNPILSDLIGGVDTVTLGDEE 262 (337)
Q Consensus 195 ~al~~~P~vlilDEp~~~ld~-~~l~~~~~~G-~tvi~t~H~~~~~~~~-~d~v~~~ll~~G~iv~~g~~~ 262 (337)
.+....|.+|++| ...|. ..+..+.+.| ..+|.+|...+....+ -++. +..+-..+....|.
T Consensus 262 ~~~~~~~~iLfiD---~~~~a~~~L~~~L~~g~v~vI~at~~~e~~~~~~~~~a---l~~Rf~~i~v~~p~ 326 (468)
T 3pxg_A 262 EIRQAGNIILFID---AAIDASNILKPSLARGELQCIGATTLDEYRKYIEKDAA---LERRFQPIQVDQPS 326 (468)
T ss_dssp HHHTCCCCEEEEC---C--------CCCTTSSSCEEEEECCTTTTHHHHTTCSH---HHHSEEEEECCCCC
T ss_pred HHHhcCCeEEEEe---CchhHHHHHHHhhcCCCEEEEecCCHHHHHHHhhcCHH---HHHhCccceeCCCC
Confidence 5555679999999 22232 3344444555 5667766655422222 2233 34455566666663
No 305
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=97.05 E-value=0.0003 Score=61.26 Aligned_cols=24 Identities=29% Similarity=0.470 Sum_probs=21.3
Q ss_pred CEEEEEcCCCCcHHHHHHHHHccc
Q 019702 123 KSILFVGRPGVGKTTVMREIARVL 146 (337)
Q Consensus 123 ~~v~IiGpnGsGKTTLL~~l~gll 146 (337)
.+.+|+|||||||||++.+|.-.+
T Consensus 24 ~~~~I~G~NgsGKStil~ai~~~l 47 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLLDAILVGL 47 (203)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHh
Confidence 489999999999999999987555
No 306
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.04 E-value=0.00032 Score=58.73 Aligned_cols=22 Identities=50% Similarity=0.702 Sum_probs=20.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHHc
Q 019702 123 KSILFVGRPGVGKTTVMREIAR 144 (337)
Q Consensus 123 ~~v~IiGpnGsGKTTLL~~l~g 144 (337)
.+++|.|++||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 3689999999999999999987
No 307
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.03 E-value=0.00038 Score=59.69 Aligned_cols=26 Identities=35% Similarity=0.410 Sum_probs=24.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHccc
Q 019702 121 YGKSILFVGRPGVGKTTVMREIARVL 146 (337)
Q Consensus 121 ~g~~v~IiGpnGsGKTTLL~~l~gll 146 (337)
+|.+++|+|++||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57789999999999999999999877
No 308
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.02 E-value=0.0003 Score=60.20 Aligned_cols=24 Identities=38% Similarity=0.616 Sum_probs=22.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcccc
Q 019702 124 SILFVGRPGVGKTTVMREIARVLS 147 (337)
Q Consensus 124 ~v~IiGpnGsGKTTLL~~l~gll~ 147 (337)
+++|+|++||||||+.+.|+..+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 689999999999999999999764
No 309
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.02 E-value=0.0019 Score=67.22 Aligned_cols=91 Identities=24% Similarity=0.384 Sum_probs=52.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEcCCcccccCCCCcccccccchhccCCCcchhHHHHHHHHHhhCCcE
Q 019702 124 SILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPEV 203 (337)
Q Consensus 124 ~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~~~~ei~~~~~~~~~~~~~~~~~~~~S~g~k~r~~ia~al~~~P~v 203 (337)
.++|.||+|+|||++.++|+..+... +..++.++- .++. .. ...++|... .......+.+
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l~~~-~~~~i~i~~-s~~~------~~--------~~~~~~~l~----~~~~~~~~~v 582 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESIFGD-EESMIRIDM-SEYM------EK--------HSTSGGQLT----EKVRRKPYSV 582 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHSC-TTCEEEEEG-GGGC------SS--------CCCC---CH----HHHHHCSSSE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCC-CcceEEEec-hhcc------cc--------cccccchhh----HHHHhCCCeE
Confidence 69999999999999999999987432 344555542 1121 10 011122221 1222345689
Q ss_pred EEEcCCCCH-HH-HHHHHHHHhcC--------------CeEEEEEcC
Q 019702 204 IIVDEIGTE-AE-AHACRSIAERG--------------VMLIGTAHG 234 (337)
Q Consensus 204 lilDEp~~~-ld-~~~l~~~~~~G--------------~tvi~t~H~ 234 (337)
|++||+-.. .+ ...+.++.+.| ..+|+||+.
T Consensus 583 l~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~ 629 (758)
T 3pxi_A 583 VLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNV 629 (758)
T ss_dssp EEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESS
T ss_pred EEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCC
Confidence 999999442 22 34455554443 367778874
No 310
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=97.01 E-value=0.0031 Score=57.96 Aligned_cols=25 Identities=44% Similarity=0.679 Sum_probs=22.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHccc
Q 019702 122 GKSILFVGRPGVGKTTVMREIARVL 146 (337)
Q Consensus 122 g~~v~IiGpnGsGKTTLL~~l~gll 146 (337)
...++|.||+|+||||+++.++..+
T Consensus 38 ~~~vll~G~~GtGKT~la~~i~~~~ 62 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAHVIAHEL 62 (324)
T ss_dssp CCCCEEECCTTCCCHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999998865
No 311
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=97.00 E-value=0.0036 Score=59.27 Aligned_cols=26 Identities=35% Similarity=0.586 Sum_probs=23.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHccc
Q 019702 121 YGKSILFVGRPGVGKTTVMREIARVL 146 (337)
Q Consensus 121 ~g~~v~IiGpnGsGKTTLL~~l~gll 146 (337)
....++|.||+|+||||+.++++..+
T Consensus 71 ~~~~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 71 SKSNILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHh
Confidence 45579999999999999999999877
No 312
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.00 E-value=0.0011 Score=66.92 Aligned_cols=36 Identities=22% Similarity=0.387 Sum_probs=29.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEE
Q 019702 121 YGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIV 157 (337)
Q Consensus 121 ~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v 157 (337)
.+.+++|.|++|+||||+++.+...+... +.+|.+.
T Consensus 203 ~~~~~~I~G~pGTGKTt~i~~l~~~l~~~-g~~Vl~~ 238 (574)
T 3e1s_A 203 GHRLVVLTGGPGTGKSTTTKAVADLAESL-GLEVGLC 238 (574)
T ss_dssp TCSEEEEECCTTSCHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred hCCEEEEEcCCCCCHHHHHHHHHHHHHhc-CCeEEEe
Confidence 46799999999999999999999987654 4556554
No 313
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.00 E-value=0.00023 Score=64.05 Aligned_cols=28 Identities=32% Similarity=0.447 Sum_probs=24.8
Q ss_pred cCCCEEEEEcCCCCcHHHHHHHHHcccc
Q 019702 120 HYGKSILFVGRPGVGKTTVMREIARVLS 147 (337)
Q Consensus 120 ~~g~~v~IiGpnGsGKTTLL~~l~gll~ 147 (337)
..+..++|+|+|||||||+.+.|+..+.
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4567899999999999999999998764
No 314
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.99 E-value=0.00039 Score=61.68 Aligned_cols=29 Identities=28% Similarity=0.214 Sum_probs=24.6
Q ss_pred cccCCCEEEEEcCCCCcHHHHHHHHHccc
Q 019702 118 LLHYGKSILFVGRPGVGKTTVMREIARVL 146 (337)
Q Consensus 118 ~v~~g~~v~IiGpnGsGKTTLL~~l~gll 146 (337)
.-.+|.+++|+|++||||||+.+.|++.+
T Consensus 12 ~~~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 12 DKMKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp --CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 34568899999999999999999999854
No 315
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.99 E-value=0.00035 Score=59.00 Aligned_cols=27 Identities=44% Similarity=0.608 Sum_probs=23.8
Q ss_pred cCCCEEEEEcCCCCcHHHHHHHHHccc
Q 019702 120 HYGKSILFVGRPGVGKTTVMREIARVL 146 (337)
Q Consensus 120 ~~g~~v~IiGpnGsGKTTLL~~l~gll 146 (337)
..+.+++|+|++||||||+.+.|+..+
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 456789999999999999999998665
No 316
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=96.99 E-value=0.00029 Score=65.21 Aligned_cols=26 Identities=38% Similarity=0.625 Sum_probs=23.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHccc
Q 019702 121 YGKSILFVGRPGVGKTTVMREIARVL 146 (337)
Q Consensus 121 ~g~~v~IiGpnGsGKTTLL~~l~gll 146 (337)
++..++|+|+||+|||||++.|.|.-
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~ 32 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQK 32 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCS
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCC
Confidence 34589999999999999999999974
No 317
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.98 E-value=0.00031 Score=59.05 Aligned_cols=24 Identities=42% Similarity=0.729 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcccc
Q 019702 124 SILFVGRPGVGKTTVMREIARVLS 147 (337)
Q Consensus 124 ~v~IiGpnGsGKTTLL~~l~gll~ 147 (337)
.+.|+|++||||||+.+.|+..+.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 588999999999999999998663
No 318
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.98 E-value=0.00035 Score=60.13 Aligned_cols=28 Identities=25% Similarity=0.285 Sum_probs=24.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHccccc
Q 019702 121 YGKSILFVGRPGVGKTTVMREIARVLSD 148 (337)
Q Consensus 121 ~g~~v~IiGpnGsGKTTLL~~l~gll~~ 148 (337)
+|.+++|.|++||||||+.+.|+..+..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 4678999999999999999999997764
No 319
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.98 E-value=0.00033 Score=63.14 Aligned_cols=24 Identities=29% Similarity=0.279 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcccc
Q 019702 124 SILFVGRPGVGKTTVMREIARVLS 147 (337)
Q Consensus 124 ~v~IiGpnGsGKTTLL~~l~gll~ 147 (337)
+++|+|||||||||+.+.|++.+.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCcCHHHHHHHHHhcCC
Confidence 689999999999999999998653
No 320
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.96 E-value=0.00017 Score=62.42 Aligned_cols=33 Identities=21% Similarity=0.387 Sum_probs=26.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHccccccCCCeEEEE
Q 019702 124 SILFVGRPGVGKTTVMREIARVLSDEFQKRVVIV 157 (337)
Q Consensus 124 ~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v 157 (337)
+++|.|++||||||+++.|+..+... +..+.++
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~-g~~v~~~ 34 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAA-GRSVATL 34 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEE-EEEEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhc-CCeEEEE
Confidence 68999999999999999999988653 3344444
No 321
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.96 E-value=0.00053 Score=57.94 Aligned_cols=34 Identities=29% Similarity=0.552 Sum_probs=26.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEc
Q 019702 124 SILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD 158 (337)
Q Consensus 124 ~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~ 158 (337)
++.|.|++||||||+.+.|+..+... +..+.+++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~-g~~~~~~~ 36 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQ-GINNKIIN 36 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTT-TCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhc-CceEEEEE
Confidence 68999999999999999999987532 34455553
No 322
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=96.96 E-value=0.0028 Score=58.53 Aligned_cols=117 Identities=23% Similarity=0.316 Sum_probs=63.4
Q ss_pred hhhhhcccCC---CEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEcCCcccccCCCCcccccccchhccCCCcchhH
Q 019702 113 DMVYDLLHYG---KSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQH 189 (337)
Q Consensus 113 ~~l~~~v~~g---~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~~~~ei~~~~~~~~~~~~~~~~~~~~S~g~k~ 189 (337)
..+...+..| ..+++.||+|+||||++++++..+.. .+..+.... . ....+
T Consensus 36 ~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l~~----~~~~i~~~~-~------~~~~i--------------- 89 (324)
T 3u61_B 36 ETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDVNA----DMMFVNGSD-C------KIDFV--------------- 89 (324)
T ss_dssp HHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHTTE----EEEEEETTT-C------CHHHH---------------
T ss_pred HHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHhCC----CEEEEcccc-c------CHHHH---------------
Confidence 3344444444 36778888999999999999987642 344443211 0 00000
Q ss_pred HHHHHHHHh-----hCCcEEEEcCCCCHH---HHHHHHHHHh---cCCeEEEEEcCcchhHHhhchHHHHHhcCceEEEe
Q 019702 190 KVMIEAVEN-----HMPEVIIVDEIGTEA---EAHACRSIAE---RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 258 (337)
Q Consensus 190 r~~ia~al~-----~~P~vlilDEp~~~l---d~~~l~~~~~---~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G~iv~~ 258 (337)
+-.+..... .++++|++||+-.-. ..+.+..+.+ .+..+|+++.... .+..+ +..+..++..
T Consensus 90 ~~~~~~~~~~~~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~---~l~~~----l~sR~~~i~~ 162 (324)
T 3u61_B 90 RGPLTNFASAASFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNID---GIIKP----LQSRCRVITF 162 (324)
T ss_dssp HTHHHHHHHBCCCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGG---GSCTT----HHHHSEEEEC
T ss_pred HHHHHHHHhhcccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCcc---ccCHH----HHhhCcEEEe
Confidence 001111111 278999999996642 2344444433 3567788887654 22222 3334456666
Q ss_pred cCHH
Q 019702 259 GDEE 262 (337)
Q Consensus 259 g~~~ 262 (337)
..|.
T Consensus 163 ~~~~ 166 (324)
T 3u61_B 163 GQPT 166 (324)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 5553
No 323
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=96.96 E-value=0.0015 Score=60.49 Aligned_cols=29 Identities=24% Similarity=0.376 Sum_probs=25.2
Q ss_pred ccCCCEEEEEcCCCCcHHHHHHHHHcccc
Q 019702 119 LHYGKSILFVGRPGVGKTTVMREIARVLS 147 (337)
Q Consensus 119 v~~g~~v~IiGpnGsGKTTLL~~l~gll~ 147 (337)
...+..++|.||+|+|||++.+.|.....
T Consensus 22 a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~ 50 (304)
T 1ojl_A 22 APSDATVLIHGDSGTGKELVARALHACSA 50 (304)
T ss_dssp CSTTSCEEEESCTTSCHHHHHHHHHHHSS
T ss_pred hCCCCcEEEECCCCchHHHHHHHHHHhCc
Confidence 45567899999999999999999998764
No 324
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.96 E-value=0.00045 Score=58.44 Aligned_cols=26 Identities=31% Similarity=0.489 Sum_probs=23.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHcccc
Q 019702 122 GKSILFVGRPGVGKTTVMREIARVLS 147 (337)
Q Consensus 122 g~~v~IiGpnGsGKTTLL~~l~gll~ 147 (337)
+..+.|+|++||||||+.+.|+..+.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 56899999999999999999987653
No 325
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.94 E-value=0.00033 Score=59.75 Aligned_cols=30 Identities=30% Similarity=0.437 Sum_probs=25.6
Q ss_pred cccCCCEEEEEcCCCCcHHHHHHHHHcccc
Q 019702 118 LLHYGKSILFVGRPGVGKTTVMREIARVLS 147 (337)
Q Consensus 118 ~v~~g~~v~IiGpnGsGKTTLL~~l~gll~ 147 (337)
.+..+.+++|+|++||||||+.+.|+..+.
T Consensus 8 ~~~~~~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 8 DLRKCKIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp HHHHSCEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 345677999999999999999999998653
No 326
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.94 E-value=0.00046 Score=58.66 Aligned_cols=28 Identities=36% Similarity=0.513 Sum_probs=24.6
Q ss_pred ccCCCEEEEEcCCCCcHHHHHHHHHccc
Q 019702 119 LHYGKSILFVGRPGVGKTTVMREIARVL 146 (337)
Q Consensus 119 v~~g~~v~IiGpnGsGKTTLL~~l~gll 146 (337)
..++.+++|+|++||||||+.+.|+..+
T Consensus 6 m~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 6 LKKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp HTTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CcCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3467899999999999999999998765
No 327
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.92 E-value=0.0011 Score=65.77 Aligned_cols=33 Identities=27% Similarity=0.457 Sum_probs=26.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEc
Q 019702 122 GKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD 158 (337)
Q Consensus 122 g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~ 158 (337)
...++|.||+|+||||++++++..+ +..+..+.
T Consensus 77 ~~~lLL~GppGtGKTtla~~la~~l----~~~~i~in 109 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAHLVAQEL----GYDILEQN 109 (516)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHT----TCEEEEEC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc----CCCEEEEe
Confidence 4689999999999999999999877 23455554
No 328
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.90 E-value=0.00055 Score=59.04 Aligned_cols=29 Identities=31% Similarity=0.431 Sum_probs=25.5
Q ss_pred cCCCEEEEEcCCCCcHHHHHHHHHccccc
Q 019702 120 HYGKSILFVGRPGVGKTTVMREIARVLSD 148 (337)
Q Consensus 120 ~~g~~v~IiGpnGsGKTTLL~~l~gll~~ 148 (337)
..|.+++|+|++||||||+.+.|+..+..
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~ 36 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYLKN 36 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 45789999999999999999999987653
No 329
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.90 E-value=0.00049 Score=58.25 Aligned_cols=25 Identities=28% Similarity=0.449 Sum_probs=22.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHccc
Q 019702 122 GKSILFVGRPGVGKTTVMREIARVL 146 (337)
Q Consensus 122 g~~v~IiGpnGsGKTTLL~~l~gll 146 (337)
+.+++|+|++||||||+.+.|+..+
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999998754
No 330
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=96.88 E-value=0.0002 Score=71.28 Aligned_cols=34 Identities=26% Similarity=0.376 Sum_probs=28.9
Q ss_pred hhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccc
Q 019702 112 IDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVL 146 (337)
Q Consensus 112 ~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll 146 (337)
++.+++.+.+| +.+|+|+|||||||||.+|..++
T Consensus 51 ~~~~~l~f~~g-~n~i~G~NGaGKS~lleAl~~ll 84 (517)
T 4ad8_A 51 ITQLELELGGG-FCAFTGETGAGKSIIVDALGLLL 84 (517)
T ss_dssp BSCEEEECCCS-EEEEEESHHHHHHHHTHHHHHHT
T ss_pred eeeEEEecCCC-eEEEEcCCCCCHHHHHHHHHHHh
Confidence 45666777777 99999999999999999997764
No 331
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.87 E-value=0.00053 Score=59.77 Aligned_cols=23 Identities=30% Similarity=0.400 Sum_probs=21.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHc
Q 019702 122 GKSILFVGRPGVGKTTVMREIAR 144 (337)
Q Consensus 122 g~~v~IiGpnGsGKTTLL~~l~g 144 (337)
+.+++|+|++||||||+++.|+.
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999987
No 332
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.87 E-value=0.00055 Score=57.53 Aligned_cols=22 Identities=32% Similarity=0.693 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcc
Q 019702 124 SILFVGRPGVGKTTVMREIARV 145 (337)
Q Consensus 124 ~v~IiGpnGsGKTTLL~~l~gl 145 (337)
.++|+|++|+|||||++.+++.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999984
No 333
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.86 E-value=0.00078 Score=57.29 Aligned_cols=33 Identities=33% Similarity=0.514 Sum_probs=25.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHccccccCCCeEEEE
Q 019702 124 SILFVGRPGVGKTTVMREIARVLSDEFQKRVVIV 157 (337)
Q Consensus 124 ~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v 157 (337)
+++|.|++||||||+.+.|+..+... +..+...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~-g~~v~~~ 34 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKR-GKKVILK 34 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHC-CC-EEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEe
Confidence 68999999999999999999987543 3344433
No 334
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.86 E-value=0.0025 Score=66.18 Aligned_cols=23 Identities=48% Similarity=0.804 Sum_probs=22.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHccc
Q 019702 124 SILFVGRPGVGKTTVMREIARVL 146 (337)
Q Consensus 124 ~v~IiGpnGsGKTTLL~~l~gll 146 (337)
.++|.||+|+|||++.++++..+
T Consensus 490 ~~ll~G~~GtGKT~la~~la~~l 512 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHh
Confidence 79999999999999999999987
No 335
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.85 E-value=0.00062 Score=58.75 Aligned_cols=29 Identities=28% Similarity=0.413 Sum_probs=25.7
Q ss_pred cCCCEEEEEcCCCCcHHHHHHHHHccccc
Q 019702 120 HYGKSILFVGRPGVGKTTVMREIARVLSD 148 (337)
Q Consensus 120 ~~g~~v~IiGpnGsGKTTLL~~l~gll~~ 148 (337)
.+|.+++|+|++||||||+.+.|+..+..
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~~ 35 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEALCA 35 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 46789999999999999999999987754
No 336
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.83 E-value=0.00051 Score=58.03 Aligned_cols=23 Identities=30% Similarity=0.696 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHccc
Q 019702 124 SILFVGRPGVGKTTVMREIARVL 146 (337)
Q Consensus 124 ~v~IiGpnGsGKTTLL~~l~gll 146 (337)
.++|+|++|+|||||++.+++..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~ 26 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTK 26 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999999964
No 337
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=96.82 E-value=0.0091 Score=55.70 Aligned_cols=36 Identities=19% Similarity=0.425 Sum_probs=28.0
Q ss_pred hhhhhcccCCC---EEEEEcCCCCcHHHHHHHHHccccc
Q 019702 113 DMVYDLLHYGK---SILFVGRPGVGKTTVMREIARVLSD 148 (337)
Q Consensus 113 ~~l~~~v~~g~---~v~IiGpnGsGKTTLL~~l~gll~~ 148 (337)
+.+...+..|. .+++.||+|+||||+.+.++..+..
T Consensus 12 ~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~ 50 (334)
T 1a5t_A 12 EKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLC 50 (334)
T ss_dssp HHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhC
Confidence 34444455554 5999999999999999999987753
No 338
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.82 E-value=0.00053 Score=61.29 Aligned_cols=25 Identities=36% Similarity=0.557 Sum_probs=22.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHccc
Q 019702 122 GKSILFVGRPGVGKTTVMREIARVL 146 (337)
Q Consensus 122 g~~v~IiGpnGsGKTTLL~~l~gll 146 (337)
.-+++|.||+||||||+.+.|+..+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999999765
No 339
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.82 E-value=0.00062 Score=59.47 Aligned_cols=27 Identities=22% Similarity=0.453 Sum_probs=23.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHcccc
Q 019702 121 YGKSILFVGRPGVGKTTVMREIARVLS 147 (337)
Q Consensus 121 ~g~~v~IiGpnGsGKTTLL~~l~gll~ 147 (337)
++..++|+|++||||||+.+.|+..+.
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 466899999999999999999988653
No 340
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.80 E-value=0.00045 Score=58.18 Aligned_cols=27 Identities=30% Similarity=0.332 Sum_probs=19.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHcccc
Q 019702 121 YGKSILFVGRPGVGKTTVMREIARVLS 147 (337)
Q Consensus 121 ~g~~v~IiGpnGsGKTTLL~~l~gll~ 147 (337)
++.++.|+|++||||||+.+.|+..+.
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHST
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 456899999999999999999987654
No 341
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.80 E-value=0.00058 Score=62.80 Aligned_cols=26 Identities=31% Similarity=0.454 Sum_probs=22.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHccc
Q 019702 121 YGKSILFVGRPGVGKTTVMREIARVL 146 (337)
Q Consensus 121 ~g~~v~IiGpnGsGKTTLL~~l~gll 146 (337)
.+..+.|+|||||||||+.+.|+..+
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999998755
No 342
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.79 E-value=0.0026 Score=67.14 Aligned_cols=27 Identities=30% Similarity=0.663 Sum_probs=23.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHccccc
Q 019702 122 GKSILFVGRPGVGKTTVMREIARVLSD 148 (337)
Q Consensus 122 g~~v~IiGpnGsGKTTLL~~l~gll~~ 148 (337)
...++|+||||+||||+++.++..+..
T Consensus 191 ~~~vlL~G~pG~GKT~la~~la~~l~~ 217 (854)
T 1qvr_A 191 KNNPVLIGEPGVGKTAIVEGLAQRIVK 217 (854)
T ss_dssp CCCCEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCceEEEcCCCCCHHHHHHHHHHHHhc
Confidence 346899999999999999999998744
No 343
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.76 E-value=0.0049 Score=57.98 Aligned_cols=27 Identities=22% Similarity=0.444 Sum_probs=23.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHcccc
Q 019702 121 YGKSILFVGRPGVGKTTVMREIARVLS 147 (337)
Q Consensus 121 ~g~~v~IiGpnGsGKTTLL~~l~gll~ 147 (337)
++.++.|+||+|||||||...|+..++
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHCC
Confidence 356899999999999999999998764
No 344
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.75 E-value=0.00075 Score=57.66 Aligned_cols=24 Identities=29% Similarity=0.245 Sum_probs=21.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHcc
Q 019702 122 GKSILFVGRPGVGKTTVMREIARV 145 (337)
Q Consensus 122 g~~v~IiGpnGsGKTTLL~~l~gl 145 (337)
..+++|+|++||||||+.+.|+..
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 357999999999999999999985
No 345
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.75 E-value=0.00088 Score=57.56 Aligned_cols=26 Identities=35% Similarity=0.540 Sum_probs=23.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHccc
Q 019702 121 YGKSILFVGRPGVGKTTVMREIARVL 146 (337)
Q Consensus 121 ~g~~v~IiGpnGsGKTTLL~~l~gll 146 (337)
.+.+++|+|++||||||+.+.|+..+
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999998865
No 346
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.73 E-value=0.00081 Score=59.10 Aligned_cols=26 Identities=31% Similarity=0.413 Sum_probs=22.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHccc
Q 019702 121 YGKSILFVGRPGVGKTTVMREIARVL 146 (337)
Q Consensus 121 ~g~~v~IiGpnGsGKTTLL~~l~gll 146 (337)
++.+++|+|++||||||+.+.|+..+
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45689999999999999999998755
No 347
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.69 E-value=0.00077 Score=57.85 Aligned_cols=24 Identities=29% Similarity=0.469 Sum_probs=22.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcccc
Q 019702 124 SILFVGRPGVGKTTVMREIARVLS 147 (337)
Q Consensus 124 ~v~IiGpnGsGKTTLL~~l~gll~ 147 (337)
+++|.|++||||||+.+.|+..+.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 799999999999999999998664
No 348
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=96.69 E-value=0.0011 Score=62.97 Aligned_cols=22 Identities=18% Similarity=0.460 Sum_probs=20.2
Q ss_pred CEEEEEcCCCCcHHHHHHHHHc
Q 019702 123 KSILFVGRPGVGKTTVMREIAR 144 (337)
Q Consensus 123 ~~v~IiGpnGsGKTTLL~~l~g 144 (337)
.+.+|+|||||||||+|-+|.=
T Consensus 26 gl~vi~G~NGaGKT~ileAI~~ 47 (371)
T 3auy_A 26 GIVAIIGENGSGKSSIFEAVFF 47 (371)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999873
No 349
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.68 E-value=0.00089 Score=58.10 Aligned_cols=23 Identities=35% Similarity=0.609 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHccc
Q 019702 124 SILFVGRPGVGKTTVMREIARVL 146 (337)
Q Consensus 124 ~v~IiGpnGsGKTTLL~~l~gll 146 (337)
.++|+||+||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999997755
No 350
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.67 E-value=0.00086 Score=57.81 Aligned_cols=23 Identities=26% Similarity=0.569 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHccc
Q 019702 124 SILFVGRPGVGKTTVMREIARVL 146 (337)
Q Consensus 124 ~v~IiGpnGsGKTTLL~~l~gll 146 (337)
.+.|+||+|||||||++.|....
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 47899999999999999997654
No 351
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.67 E-value=0.001 Score=55.42 Aligned_cols=25 Identities=24% Similarity=0.559 Sum_probs=22.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHHcccc
Q 019702 123 KSILFVGRPGVGKTTVMREIARVLS 147 (337)
Q Consensus 123 ~~v~IiGpnGsGKTTLL~~l~gll~ 147 (337)
++++|+|++||||||+.+.|+..+.
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 6899999999999999999988653
No 352
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=96.64 E-value=0.0006 Score=58.50 Aligned_cols=33 Identities=21% Similarity=0.386 Sum_probs=27.3
Q ss_pred chhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHc
Q 019702 111 HIDMVYDLLHYGKSILFVGRPGVGKTTVMREIAR 144 (337)
Q Consensus 111 ~~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~g 144 (337)
.++.+++..+.. .++|+|++|+|||||++.+.+
T Consensus 15 ~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 15 VLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp HHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSC
T ss_pred HHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhc
Confidence 467777766665 578999999999999999986
No 353
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.63 E-value=0.00097 Score=59.03 Aligned_cols=30 Identities=20% Similarity=0.405 Sum_probs=24.4
Q ss_pred hhhcccCCCEEEEEcCCCCcHHHHHHHHHc
Q 019702 115 VYDLLHYGKSILFVGRPGVGKTTVMREIAR 144 (337)
Q Consensus 115 l~~~v~~g~~v~IiGpnGsGKTTLL~~l~g 144 (337)
+-..+..|+.+++.|||||||||++..++.
T Consensus 69 ~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~ 98 (235)
T 3llm_A 69 ILEAISQNSVVIIRGATGCGKTTQVPQFIL 98 (235)
T ss_dssp HHHHHHHCSEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHhcCCEEEEEeCCCCCcHHhHHHHHh
Confidence 334567899999999999999998876653
No 354
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.63 E-value=0.0013 Score=68.69 Aligned_cols=116 Identities=20% Similarity=0.353 Sum_probs=64.6
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEcCCcccccCCCCcccccccchhccCCCcchhHHHHHHHHHhhCC
Q 019702 122 GKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMP 201 (337)
Q Consensus 122 g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~~~~ei~~~~~~~~~~~~~~~~~~~~S~g~k~r~~ia~al~~~P 201 (337)
...+++.||||+|||.+.++++..... ..+.+.. .++.. ..+......-|..+..|....|
T Consensus 511 ~~gvLl~GPPGtGKT~lAkaiA~e~~~----~f~~v~~-~~l~s--------------~~vGese~~vr~lF~~Ar~~~P 571 (806)
T 3cf2_A 511 SKGVLFYGPPGCGKTLLAKAIANECQA----NFISIKG-PELLT--------------MWFGESEANVREIFDKARQAAP 571 (806)
T ss_dssp CSCCEEESSTTSSHHHHHHHHHHTTTC----EEEECCH-HHHHT--------------TTCSSCHHHHHHHHHHHHTTCS
T ss_pred CceEEEecCCCCCchHHHHHHHHHhCC----ceEEecc-chhhc--------------cccchHHHHHHHHHHHHHHcCC
Confidence 346899999999999999999997643 2332221 11110 0111223345567888888999
Q ss_pred cEEEEcCCCCHH--------H---------HHHHHHHH----hcCCeEEEEEcCcchhHHhhchHHHHHhcCc---eEEE
Q 019702 202 EVIIVDEIGTEA--------E---------AHACRSIA----ERGVMLIGTAHGEWLENIIKNPILSDLIGGV---DTVT 257 (337)
Q Consensus 202 ~vlilDEp~~~l--------d---------~~~l~~~~----~~G~tvi~t~H~~~~~~~~~d~v~~~ll~~G---~iv~ 257 (337)
.||++||.-+-. + .+.+.++- ..++.||.+|...+.. |+.+ +.-| +.++
T Consensus 572 ~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi~aTN~p~~l----D~Al---lRpgRfd~~i~ 644 (806)
T 3cf2_A 572 CVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDII----DPAI---LRPGRLDQLIY 644 (806)
T ss_dssp EEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSSSEEEECC-CCSSSS----CHHH---HSTTTSCCEEE
T ss_pred ceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCchhC----CHhH---cCCCcceEEEE
Confidence 999999985410 1 12233332 2355677777766643 3333 3323 4777
Q ss_pred ecCHHH
Q 019702 258 LGDEEA 263 (337)
Q Consensus 258 ~g~~~~ 263 (337)
.+-|+.
T Consensus 645 v~lPd~ 650 (806)
T 3cf2_A 645 IPLPDE 650 (806)
T ss_dssp C-----
T ss_pred ECCcCH
Confidence 777754
No 355
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.63 E-value=0.001 Score=57.82 Aligned_cols=23 Identities=30% Similarity=0.546 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHccc
Q 019702 124 SILFVGRPGVGKTTVMREIARVL 146 (337)
Q Consensus 124 ~v~IiGpnGsGKTTLL~~l~gll 146 (337)
.++|+||+||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998755
No 356
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.63 E-value=0.0011 Score=58.56 Aligned_cols=31 Identities=29% Similarity=0.476 Sum_probs=25.9
Q ss_pred hcccCCCEEEEEcCCCCcHHHHHHHHHcccc
Q 019702 117 DLLHYGKSILFVGRPGVGKTTVMREIARVLS 147 (337)
Q Consensus 117 ~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~ 147 (337)
..+.+..++.|+|||||||||..+.|+..+.
T Consensus 24 ~~~~k~kiI~llGpPGsGKgTqa~~L~~~~g 54 (217)
T 3umf_A 24 QKLAKAKVIFVLGGPGSGKGTQCEKLVQKFH 54 (217)
T ss_dssp CCTTSCEEEEEECCTTCCHHHHHHHHHHHHC
T ss_pred hhccCCcEEEEECCCCCCHHHHHHHHHHHHC
Confidence 3456677899999999999999999987653
No 357
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.63 E-value=0.001 Score=56.23 Aligned_cols=25 Identities=36% Similarity=0.485 Sum_probs=22.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHccccc
Q 019702 124 SILFVGRPGVGKTTVMREIARVLSD 148 (337)
Q Consensus 124 ~v~IiGpnGsGKTTLL~~l~gll~~ 148 (337)
+++|+|++||||||+.+.|+..+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~ 26 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQ 26 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5899999999999999999987743
No 358
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.61 E-value=0.0011 Score=56.06 Aligned_cols=24 Identities=33% Similarity=0.592 Sum_probs=21.7
Q ss_pred CEEEEEcCCCCcHHHHHHHHHccc
Q 019702 123 KSILFVGRPGVGKTTVMREIARVL 146 (337)
Q Consensus 123 ~~v~IiGpnGsGKTTLL~~l~gll 146 (337)
.+++|+|++||||||+.+.|+..+
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998765
No 359
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.61 E-value=0.00078 Score=56.93 Aligned_cols=25 Identities=40% Similarity=0.725 Sum_probs=21.8
Q ss_pred CEEEEEcCCCCcHHHHHHHHHcccc
Q 019702 123 KSILFVGRPGVGKTTVMREIARVLS 147 (337)
Q Consensus 123 ~~v~IiGpnGsGKTTLL~~l~gll~ 147 (337)
.+++|+|++||||||+.+.|+..+.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC
Confidence 3589999999999999999988653
No 360
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=96.61 E-value=0.0011 Score=56.39 Aligned_cols=33 Identities=24% Similarity=0.344 Sum_probs=20.7
Q ss_pred hhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHcc
Q 019702 112 IDMVYDLLHYGKSILFVGRPGVGKTTVMREIARV 145 (337)
Q Consensus 112 ~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gl 145 (337)
++.+++..+.. .++++|++|+|||||++.+.+-
T Consensus 14 l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 14 LASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp ----------C-EEEEEESTTSSHHHHHHHHHHS
T ss_pred HHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcC
Confidence 45555554444 6899999999999999999873
No 361
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.60 E-value=0.00093 Score=55.63 Aligned_cols=24 Identities=54% Similarity=0.787 Sum_probs=21.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHHccc
Q 019702 123 KSILFVGRPGVGKTTVMREIARVL 146 (337)
Q Consensus 123 ~~v~IiGpnGsGKTTLL~~l~gll 146 (337)
.+++|+|++||||||+.+.|+..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999998865
No 362
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.59 E-value=0.0009 Score=58.53 Aligned_cols=26 Identities=23% Similarity=0.305 Sum_probs=22.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHcccc
Q 019702 122 GKSILFVGRPGVGKTTVMREIARVLS 147 (337)
Q Consensus 122 g~~v~IiGpnGsGKTTLL~~l~gll~ 147 (337)
+.++.|+|++||||||+.+.|+..+.
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45799999999999999999987653
No 363
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=96.59 E-value=0.0031 Score=63.33 Aligned_cols=52 Identities=23% Similarity=0.407 Sum_probs=33.0
Q ss_pred ccCCCEEEEEcCCCCcHHHHHHHHHccc----cccCCCeEEEEcCCc-ccccCCCCcc
Q 019702 119 LHYGKSILFVGRPGVGKTTVMREIARVL----SDEFQKRVVIVDTSN-EIGGDGDIPH 171 (337)
Q Consensus 119 v~~g~~v~IiGpnGsGKTTLL~~l~gll----~~~~~~~i~~v~~~~-ei~~~~~~~~ 171 (337)
+...-.++|.|.+|||||++++.|+--+ .|. .-+++++|-.. ++.....+|+
T Consensus 211 L~k~pHlLIaG~TGSGKS~~L~tlI~sLl~~~sP~-ev~lilIDpKg~eLs~~~~lPH 267 (574)
T 2iut_A 211 LAKMPHLLVAGTTGSGKSVGVNAMLLSILFKSTPS-EARLIMIDPKMLELSIYEGIPH 267 (574)
T ss_dssp GGGSCCEEEECCTTSSHHHHHHHHHHHHHTTCCTT-TEEEEEECSSSHHHHTTTTCTT
T ss_pred hhhCCeeEEECCCCCCHHHHHHHHHHHHHHhCCCc-ceEEEEeCCChhhhHhhcCCCc
Confidence 4445679999999999999999866533 232 34566666542 4433333343
No 364
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.58 E-value=0.0012 Score=54.74 Aligned_cols=24 Identities=33% Similarity=0.419 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcccc
Q 019702 124 SILFVGRPGVGKTTVMREIARVLS 147 (337)
Q Consensus 124 ~v~IiGpnGsGKTTLL~~l~gll~ 147 (337)
.++|+|++||||||+.+.|+..+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999998653
No 365
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=96.57 E-value=0.0011 Score=60.03 Aligned_cols=24 Identities=33% Similarity=0.682 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcccc
Q 019702 124 SILFVGRPGVGKTTVMREIARVLS 147 (337)
Q Consensus 124 ~v~IiGpnGsGKTTLL~~l~gll~ 147 (337)
.++|+|++|||||||++.|+|...
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~~ 28 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLRQ 28 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTCE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 589999999999999999999753
No 366
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.55 E-value=0.0012 Score=59.50 Aligned_cols=27 Identities=41% Similarity=0.658 Sum_probs=23.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHcccc
Q 019702 121 YGKSILFVGRPGVGKTTVMREIARVLS 147 (337)
Q Consensus 121 ~g~~v~IiGpnGsGKTTLL~~l~gll~ 147 (337)
.+.++.|+|++||||||+.+.|+..+.
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 356899999999999999999998764
No 367
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.53 E-value=0.0013 Score=56.41 Aligned_cols=25 Identities=28% Similarity=0.490 Sum_probs=22.0
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHccc
Q 019702 122 GKSILFVGRPGVGKTTVMREIARVL 146 (337)
Q Consensus 122 g~~v~IiGpnGsGKTTLL~~l~gll 146 (337)
..+++|+|++||||||+.+.|+..+
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4589999999999999999998754
No 368
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.51 E-value=0.0015 Score=57.04 Aligned_cols=25 Identities=28% Similarity=0.534 Sum_probs=22.6
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHccc
Q 019702 122 GKSILFVGRPGVGKTTVMREIARVL 146 (337)
Q Consensus 122 g~~v~IiGpnGsGKTTLL~~l~gll 146 (337)
+..++|+|++||||||+.+.|+..+
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4679999999999999999998866
No 369
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=96.50 E-value=0.0073 Score=58.15 Aligned_cols=25 Identities=32% Similarity=0.594 Sum_probs=22.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHHcccc
Q 019702 123 KSILFVGRPGVGKTTVMREIARVLS 147 (337)
Q Consensus 123 ~~v~IiGpnGsGKTTLL~~l~gll~ 147 (337)
.+++|+||+|||||||...|+..++
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCC
Confidence 4789999999999999999998664
No 370
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=96.49 E-value=0.0013 Score=53.71 Aligned_cols=23 Identities=22% Similarity=0.550 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHccc
Q 019702 124 SILFVGRPGVGKTTVMREIARVL 146 (337)
Q Consensus 124 ~v~IiGpnGsGKTTLL~~l~gll 146 (337)
.++|+|++|+|||||++.+.+-.
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47999999999999999998754
No 371
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=96.46 E-value=0.0021 Score=56.42 Aligned_cols=36 Identities=25% Similarity=0.307 Sum_probs=29.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEE
Q 019702 121 YGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIV 157 (337)
Q Consensus 121 ~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v 157 (337)
+|.++.|.|++||||||+++.|...+... +..+.+.
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~-~~~v~~~ 40 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAERLRER-GIEVQLT 40 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHTT-TCCEEEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHHHc-CCCcccc
Confidence 57899999999999999999999988654 4445444
No 372
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=96.46 E-value=0.0015 Score=55.05 Aligned_cols=23 Identities=26% Similarity=0.416 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHccc
Q 019702 124 SILFVGRPGVGKTTVMREIARVL 146 (337)
Q Consensus 124 ~v~IiGpnGsGKTTLL~~l~gll 146 (337)
.++|+|++|||||||++.+.+..
T Consensus 50 ~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 50 SIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999999864
No 373
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=96.46 E-value=0.0014 Score=53.14 Aligned_cols=23 Identities=26% Similarity=0.499 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHccc
Q 019702 124 SILFVGRPGVGKTTVMREIARVL 146 (337)
Q Consensus 124 ~v~IiGpnGsGKTTLL~~l~gll 146 (337)
.++++|++|+|||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999998753
No 374
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.45 E-value=0.0015 Score=53.14 Aligned_cols=23 Identities=22% Similarity=0.447 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHccc
Q 019702 124 SILFVGRPGVGKTTVMREIARVL 146 (337)
Q Consensus 124 ~v~IiGpnGsGKTTLL~~l~gll 146 (337)
.++|+|++|+|||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999988643
No 375
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=96.44 E-value=0.0015 Score=53.01 Aligned_cols=23 Identities=30% Similarity=0.716 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHccc
Q 019702 124 SILFVGRPGVGKTTVMREIARVL 146 (337)
Q Consensus 124 ~v~IiGpnGsGKTTLL~~l~gll 146 (337)
.++++|++|+|||||++.+.+-.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998754
No 376
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.44 E-value=0.0016 Score=53.36 Aligned_cols=22 Identities=23% Similarity=0.474 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcc
Q 019702 124 SILFVGRPGVGKTTVMREIARV 145 (337)
Q Consensus 124 ~v~IiGpnGsGKTTLL~~l~gl 145 (337)
.++|+|++|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999874
No 377
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.43 E-value=0.0016 Score=58.08 Aligned_cols=27 Identities=26% Similarity=0.441 Sum_probs=23.5
Q ss_pred cCCCEEEEEcCCCCcHHHHHHHHHccc
Q 019702 120 HYGKSILFVGRPGVGKTTVMREIARVL 146 (337)
Q Consensus 120 ~~g~~v~IiGpnGsGKTTLL~~l~gll 146 (337)
.++-.++|+||+||||||+.+.|+..+
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 356689999999999999999998654
No 378
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.43 E-value=0.005 Score=63.99 Aligned_cols=118 Identities=20% Similarity=0.348 Sum_probs=59.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHccccccC------CCeEEEEcCCcccccCCCCcccccccchhccCCCcchhHHHHHH
Q 019702 121 YGKSILFVGRPGVGKTTVMREIARVLSDEF------QKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIE 194 (337)
Q Consensus 121 ~g~~v~IiGpnGsGKTTLL~~l~gll~~~~------~~~i~~v~~~~ei~~~~~~~~~~~~~~~~~~~~S~g~k~r~~ia 194 (337)
....++|+||||+||||+.+.++..+.... +..+..++. + ....+ ....+.+-.+.
T Consensus 200 ~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~---------------g-~~~~G--~~e~~l~~~~~ 261 (758)
T 3pxi_A 200 TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM---------------G-TKYRG--EFEDRLKKVMD 261 (758)
T ss_dssp SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC----------------------------CTTHHHHHH
T ss_pred CCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc---------------c-ccccc--hHHHHHHHHHH
Confidence 455899999999999999999999874320 111111110 0 00000 01123334455
Q ss_pred HHHhhCCcEEEEcCCCCHHHH-HHHHHHHhcC-CeEEEEEcCcchhHHh-hchHHHHHhcCceEEEecCHH
Q 019702 195 AVENHMPEVIIVDEIGTEAEA-HACRSIAERG-VMLIGTAHGEWLENII-KNPILSDLIGGVDTVTLGDEE 262 (337)
Q Consensus 195 ~al~~~P~vlilDEp~~~ld~-~~l~~~~~~G-~tvi~t~H~~~~~~~~-~d~v~~~ll~~G~iv~~g~~~ 262 (337)
.+....|-+|++| ...|. ..+..+.+.| ..+|.+|...+....+ -++.+ ..+-..+....|.
T Consensus 262 ~~~~~~~~iLfiD---~~~~~~~~L~~~l~~~~v~~I~at~~~~~~~~~~~d~al---~rRf~~i~v~~p~ 326 (758)
T 3pxi_A 262 EIRQAGNIILFID---AAIDASNILKPSLARGELQCIGATTLDEYRKYIEKDAAL---ERRFQPIQVDQPS 326 (758)
T ss_dssp HHHTCCCCEEEEC---C--------CCCTTSSSCEEEEECCTTTTHHHHTTCSHH---HHSEEEEECCCCC
T ss_pred HHHhcCCEEEEEc---CchhHHHHHHHHHhcCCEEEEeCCChHHHHHHhhccHHH---HhhCcEEEeCCCC
Confidence 6666789999999 33332 3343334454 6677777655422211 23333 2344556666553
No 379
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.43 E-value=0.0016 Score=57.20 Aligned_cols=23 Identities=30% Similarity=0.361 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHccc
Q 019702 124 SILFVGRPGVGKTTVMREIARVL 146 (337)
Q Consensus 124 ~v~IiGpnGsGKTTLL~~l~gll 146 (337)
+++|+|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998765
No 380
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=96.42 E-value=0.0016 Score=53.63 Aligned_cols=23 Identities=35% Similarity=0.629 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHccc
Q 019702 124 SILFVGRPGVGKTTVMREIARVL 146 (337)
Q Consensus 124 ~v~IiGpnGsGKTTLL~~l~gll 146 (337)
.++|+|++|+|||||++.+.+-.
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 48999999999999999998754
No 381
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=96.41 E-value=0.0016 Score=53.01 Aligned_cols=23 Identities=26% Similarity=0.453 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHccc
Q 019702 124 SILFVGRPGVGKTTVMREIARVL 146 (337)
Q Consensus 124 ~v~IiGpnGsGKTTLL~~l~gll 146 (337)
.++++|++|+|||||++.+.+--
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999998753
No 382
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=96.40 E-value=0.0016 Score=53.26 Aligned_cols=23 Identities=26% Similarity=0.543 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHccc
Q 019702 124 SILFVGRPGVGKTTVMREIARVL 146 (337)
Q Consensus 124 ~v~IiGpnGsGKTTLL~~l~gll 146 (337)
.++|+|++|+|||||++.+.+-.
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998864
No 383
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=96.38 E-value=0.0014 Score=53.64 Aligned_cols=23 Identities=39% Similarity=0.735 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHccc
Q 019702 124 SILFVGRPGVGKTTVMREIARVL 146 (337)
Q Consensus 124 ~v~IiGpnGsGKTTLL~~l~gll 146 (337)
.++|+|++|+|||||++.+.+..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~ 26 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVE 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCcc
Confidence 47899999999999999998754
No 384
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=96.38 E-value=0.0017 Score=53.23 Aligned_cols=23 Identities=30% Similarity=0.583 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHccc
Q 019702 124 SILFVGRPGVGKTTVMREIARVL 146 (337)
Q Consensus 124 ~v~IiGpnGsGKTTLL~~l~gll 146 (337)
.++|+|++|+|||||++.+.+--
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 47999999999999999998753
No 385
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.37 E-value=0.0018 Score=56.30 Aligned_cols=23 Identities=30% Similarity=0.427 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHccc
Q 019702 124 SILFVGRPGVGKTTVMREIARVL 146 (337)
Q Consensus 124 ~v~IiGpnGsGKTTLL~~l~gll 146 (337)
.++|+|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998865
No 386
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.37 E-value=0.0017 Score=58.06 Aligned_cols=25 Identities=28% Similarity=0.351 Sum_probs=22.2
Q ss_pred CEEEEEcCCCCcHHHHHHHHHcccc
Q 019702 123 KSILFVGRPGVGKTTVMREIARVLS 147 (337)
Q Consensus 123 ~~v~IiGpnGsGKTTLL~~l~gll~ 147 (337)
-+++|+|++||||||+.+.|+..+.
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3799999999999999999988654
No 387
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.37 E-value=0.0018 Score=56.55 Aligned_cols=24 Identities=33% Similarity=0.667 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcccc
Q 019702 124 SILFVGRPGVGKTTVMREIARVLS 147 (337)
Q Consensus 124 ~v~IiGpnGsGKTTLL~~l~gll~ 147 (337)
++.|+|||||||+|..+.|+..+.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g 25 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG 25 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 578999999999999999998653
No 388
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.35 E-value=0.0018 Score=52.92 Aligned_cols=23 Identities=17% Similarity=0.437 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHccc
Q 019702 124 SILFVGRPGVGKTTVMREIARVL 146 (337)
Q Consensus 124 ~v~IiGpnGsGKTTLL~~l~gll 146 (337)
.++++|++|+|||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998754
No 389
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=96.35 E-value=0.0018 Score=53.05 Aligned_cols=23 Identities=30% Similarity=0.628 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHccc
Q 019702 124 SILFVGRPGVGKTTVMREIARVL 146 (337)
Q Consensus 124 ~v~IiGpnGsGKTTLL~~l~gll 146 (337)
.++|+|++|+|||||++.+.+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 37899999999999999998754
No 390
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=96.35 E-value=0.0018 Score=53.06 Aligned_cols=23 Identities=22% Similarity=0.391 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHccc
Q 019702 124 SILFVGRPGVGKTTVMREIARVL 146 (337)
Q Consensus 124 ~v~IiGpnGsGKTTLL~~l~gll 146 (337)
.++|+|++|+|||||++.+.+-.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998753
No 391
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=96.34 E-value=0.0017 Score=61.85 Aligned_cols=24 Identities=29% Similarity=0.436 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcccc
Q 019702 124 SILFVGRPGVGKTTVMREIARVLS 147 (337)
Q Consensus 124 ~v~IiGpnGsGKTTLL~~l~gll~ 147 (337)
.++|+|+||||||||++.|+|...
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~ 204 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQ 204 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCCc
Confidence 489999999999999999999764
No 392
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=96.34 E-value=0.0019 Score=53.46 Aligned_cols=23 Identities=26% Similarity=0.566 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHccc
Q 019702 124 SILFVGRPGVGKTTVMREIARVL 146 (337)
Q Consensus 124 ~v~IiGpnGsGKTTLL~~l~gll 146 (337)
.++|+|++|+|||||++.+.+-.
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998753
No 393
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.33 E-value=0.002 Score=55.66 Aligned_cols=24 Identities=29% Similarity=0.357 Sum_probs=21.8
Q ss_pred CEEEEEcCCCCcHHHHHHHHHccc
Q 019702 123 KSILFVGRPGVGKTTVMREIARVL 146 (337)
Q Consensus 123 ~~v~IiGpnGsGKTTLL~~l~gll 146 (337)
.+++|+|++||||||+.+.|+..+
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 579999999999999999999864
No 394
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=96.33 E-value=0.0019 Score=53.52 Aligned_cols=23 Identities=30% Similarity=0.596 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHccc
Q 019702 124 SILFVGRPGVGKTTVMREIARVL 146 (337)
Q Consensus 124 ~v~IiGpnGsGKTTLL~~l~gll 146 (337)
.++|+|++|||||||++.+.+-.
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58999999999999999998754
No 395
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=96.33 E-value=0.0019 Score=52.71 Aligned_cols=22 Identities=23% Similarity=0.508 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcc
Q 019702 124 SILFVGRPGVGKTTVMREIARV 145 (337)
Q Consensus 124 ~v~IiGpnGsGKTTLL~~l~gl 145 (337)
.++|+|++|+|||||++.+.+-
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999874
No 396
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.33 E-value=0.0054 Score=63.59 Aligned_cols=28 Identities=32% Similarity=0.503 Sum_probs=24.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHccccc
Q 019702 121 YGKSILFVGRPGVGKTTVMREIARVLSD 148 (337)
Q Consensus 121 ~g~~v~IiGpnGsGKTTLL~~l~gll~~ 148 (337)
.+..++|+||+|+||||+++.++..+..
T Consensus 206 ~~~~vlL~G~~GtGKT~la~~la~~l~~ 233 (758)
T 1r6b_X 206 RKNNPLLVGESGVGKTAIAEGLAWRIVQ 233 (758)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEcCCCCCHHHHHHHHHHHHHh
Confidence 4678999999999999999999998743
No 397
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.32 E-value=0.0023 Score=56.47 Aligned_cols=27 Identities=30% Similarity=0.550 Sum_probs=23.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHcccc
Q 019702 121 YGKSILFVGRPGVGKTTVMREIARVLS 147 (337)
Q Consensus 121 ~g~~v~IiGpnGsGKTTLL~~l~gll~ 147 (337)
.+..+.|+|++||||||+.+.|+..+.
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 456899999999999999999998653
No 398
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=96.32 E-value=0.0018 Score=62.32 Aligned_cols=29 Identities=28% Similarity=0.362 Sum_probs=25.1
Q ss_pred hcccCCCEEEEEcCCCCcHHHHHHHHHcc
Q 019702 117 DLLHYGKSILFVGRPGVGKTTVMREIARV 145 (337)
Q Consensus 117 ~~v~~g~~v~IiGpnGsGKTTLL~~l~gl 145 (337)
..+..+..++|+|+||+|||||+++|++.
T Consensus 17 g~i~~~~kvgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 17 GRFGTSLKIGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp CCSSSCCCEEEECCSSSSHHHHHHHHHC-
T ss_pred hhccCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 34667788999999999999999999997
No 399
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=96.31 E-value=0.0018 Score=54.64 Aligned_cols=23 Identities=26% Similarity=0.525 Sum_probs=21.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHHcc
Q 019702 123 KSILFVGRPGVGKTTVMREIARV 145 (337)
Q Consensus 123 ~~v~IiGpnGsGKTTLL~~l~gl 145 (337)
-.++|+|++|+|||||++.+.+-
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999875
No 400
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.31 E-value=0.0032 Score=56.39 Aligned_cols=41 Identities=22% Similarity=0.362 Sum_probs=30.7
Q ss_pred hcccCCCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEc
Q 019702 117 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD 158 (337)
Q Consensus 117 ~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~ 158 (337)
.....+..++|.||+|+|||+++++|....... +..+.+++
T Consensus 24 ~~~~~~~~vll~G~~GtGKt~la~~i~~~~~~~-~~~~~~v~ 64 (265)
T 2bjv_A 24 HLAPLDKPVLIIGERGTGKELIASRLHYLSSRW-QGPFISLN 64 (265)
T ss_dssp HHTTSCSCEEEECCTTSCHHHHHHHHHHTSTTT-TSCEEEEE
T ss_pred HHhCCCCCEEEECCCCCcHHHHHHHHHHhcCcc-CCCeEEEe
Confidence 334556789999999999999999999887543 34455443
No 401
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=96.30 E-value=0.0018 Score=62.99 Aligned_cols=24 Identities=38% Similarity=0.625 Sum_probs=22.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcccc
Q 019702 124 SILFVGRPGVGKTTVMREIARVLS 147 (337)
Q Consensus 124 ~v~IiGpnGsGKTTLL~~l~gll~ 147 (337)
.++|+|+||+|||||++.|+|...
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~~ 205 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKER 205 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTT
T ss_pred eEEEECCCCCCHHHHHHHHhCCcc
Confidence 789999999999999999999753
No 402
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=96.29 E-value=0.0034 Score=59.32 Aligned_cols=37 Identities=27% Similarity=0.513 Sum_probs=29.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEcC
Q 019702 122 GKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDT 159 (337)
Q Consensus 122 g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~~ 159 (337)
.-.++|+|++|+|||||++.|+..+... +.++.+++.
T Consensus 79 ~~~I~i~G~~G~GKSTl~~~L~~~l~~~-g~kV~vi~~ 115 (355)
T 3p32_A 79 AHRVGITGVPGVGKSTAIEALGMHLIER-GHRVAVLAV 115 (355)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTT-TCCEEEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHhC-CCceEEEec
Confidence 3489999999999999999999887544 566766643
No 403
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=96.28 E-value=0.0017 Score=53.66 Aligned_cols=23 Identities=30% Similarity=0.622 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHccc
Q 019702 124 SILFVGRPGVGKTTVMREIARVL 146 (337)
Q Consensus 124 ~v~IiGpnGsGKTTLL~~l~gll 146 (337)
.++|+|++|+|||||++.+.+-.
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~~ 33 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADNT 33 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998753
No 404
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=96.28 E-value=0.002 Score=53.23 Aligned_cols=22 Identities=27% Similarity=0.536 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcc
Q 019702 124 SILFVGRPGVGKTTVMREIARV 145 (337)
Q Consensus 124 ~v~IiGpnGsGKTTLL~~l~gl 145 (337)
.++|+|++|+|||||++.+.+-
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999876
No 405
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=96.26 E-value=0.0021 Score=52.43 Aligned_cols=22 Identities=18% Similarity=0.527 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcc
Q 019702 124 SILFVGRPGVGKTTVMREIARV 145 (337)
Q Consensus 124 ~v~IiGpnGsGKTTLL~~l~gl 145 (337)
.++|+|++|+|||||++.+.+-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999864
No 406
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=96.25 E-value=0.002 Score=54.08 Aligned_cols=23 Identities=30% Similarity=0.615 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHccc
Q 019702 124 SILFVGRPGVGKTTVMREIARVL 146 (337)
Q Consensus 124 ~v~IiGpnGsGKTTLL~~l~gll 146 (337)
.++|+|++|+|||||++.+.+--
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 68999999999999999998864
No 407
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=96.23 E-value=0.003 Score=52.23 Aligned_cols=26 Identities=23% Similarity=0.295 Sum_probs=22.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHccc
Q 019702 121 YGKSILFVGRPGVGKTTVMREIARVL 146 (337)
Q Consensus 121 ~g~~v~IiGpnGsGKTTLL~~l~gll 146 (337)
+.-.++|+|++|+|||||++.+.+-.
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~~ 32 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHSK 32 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 34579999999999999999998743
No 408
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=96.23 E-value=0.0022 Score=53.88 Aligned_cols=23 Identities=17% Similarity=0.492 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHccc
Q 019702 124 SILFVGRPGVGKTTVMREIARVL 146 (337)
Q Consensus 124 ~v~IiGpnGsGKTTLL~~l~gll 146 (337)
.++|+|++|+|||||++.+.+-.
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58999999999999999999864
No 409
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=96.22 E-value=0.0023 Score=53.40 Aligned_cols=23 Identities=26% Similarity=0.512 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHccc
Q 019702 124 SILFVGRPGVGKTTVMREIARVL 146 (337)
Q Consensus 124 ~v~IiGpnGsGKTTLL~~l~gll 146 (337)
.++|+|++|+|||||++.+.+-.
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 48999999999999999998754
No 410
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.22 E-value=0.0023 Score=55.76 Aligned_cols=26 Identities=35% Similarity=0.608 Sum_probs=22.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHccc
Q 019702 121 YGKSILFVGRPGVGKTTVMREIARVL 146 (337)
Q Consensus 121 ~g~~v~IiGpnGsGKTTLL~~l~gll 146 (337)
.|..++|+||+|||||||...|+...
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 47789999999999999999998753
No 411
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=96.21 E-value=0.0022 Score=53.71 Aligned_cols=23 Identities=35% Similarity=0.670 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHccc
Q 019702 124 SILFVGRPGVGKTTVMREIARVL 146 (337)
Q Consensus 124 ~v~IiGpnGsGKTTLL~~l~gll 146 (337)
.++|+|++|+|||||++.+.+-.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCcC
Confidence 47899999999999999998854
No 412
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=96.20 E-value=0.0025 Score=58.07 Aligned_cols=23 Identities=30% Similarity=0.512 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHccc
Q 019702 124 SILFVGRPGVGKTTVMREIARVL 146 (337)
Q Consensus 124 ~v~IiGpnGsGKTTLL~~l~gll 146 (337)
.++|+|+||||||||++.++|..
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999963
No 413
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=96.19 E-value=0.0026 Score=52.56 Aligned_cols=23 Identities=26% Similarity=0.371 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHccc
Q 019702 124 SILFVGRPGVGKTTVMREIARVL 146 (337)
Q Consensus 124 ~v~IiGpnGsGKTTLL~~l~gll 146 (337)
.++|+|++|+|||||++.+.+-.
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~~ 30 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQET 30 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGGG
T ss_pred EEEEECcCCCCHHHHHHHHHhCc
Confidence 58999999999999999998753
No 414
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=96.19 E-value=0.002 Score=54.17 Aligned_cols=23 Identities=35% Similarity=0.595 Sum_probs=20.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHHcc
Q 019702 123 KSILFVGRPGVGKTTVMREIARV 145 (337)
Q Consensus 123 ~~v~IiGpnGsGKTTLL~~l~gl 145 (337)
-.++|+|++|+|||||++.+.+-
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999875
No 415
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=96.18 E-value=0.0025 Score=53.33 Aligned_cols=23 Identities=35% Similarity=0.514 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHccc
Q 019702 124 SILFVGRPGVGKTTVMREIARVL 146 (337)
Q Consensus 124 ~v~IiGpnGsGKTTLL~~l~gll 146 (337)
.++|+|++|+|||||++.+.+-.
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~~ 35 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDGK 35 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998743
No 416
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=96.17 E-value=0.0025 Score=52.22 Aligned_cols=23 Identities=35% Similarity=0.525 Sum_probs=20.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHHcc
Q 019702 123 KSILFVGRPGVGKTTVMREIARV 145 (337)
Q Consensus 123 ~~v~IiGpnGsGKTTLL~~l~gl 145 (337)
-.++|+|++|+|||||++.+.+-
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999764
No 417
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=96.17 E-value=0.0038 Score=55.76 Aligned_cols=29 Identities=28% Similarity=0.468 Sum_probs=26.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHcccccc
Q 019702 121 YGKSILFVGRPGVGKTTVMREIARVLSDE 149 (337)
Q Consensus 121 ~g~~v~IiGpnGsGKTTLL~~l~gll~~~ 149 (337)
+|.++.|.|++||||||+++.|...+...
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~~~ 54 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQQN 54 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 57899999999999999999999988654
No 418
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=96.16 E-value=0.0025 Score=52.58 Aligned_cols=22 Identities=27% Similarity=0.576 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcc
Q 019702 124 SILFVGRPGVGKTTVMREIARV 145 (337)
Q Consensus 124 ~v~IiGpnGsGKTTLL~~l~gl 145 (337)
.++|+|++|+|||||++.+.+-
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 419
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=96.16 E-value=0.0025 Score=53.77 Aligned_cols=23 Identities=30% Similarity=0.673 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHccc
Q 019702 124 SILFVGRPGVGKTTVMREIARVL 146 (337)
Q Consensus 124 ~v~IiGpnGsGKTTLL~~l~gll 146 (337)
.++|+|++|+|||||++.+.+--
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998753
No 420
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.16 E-value=0.0027 Score=58.00 Aligned_cols=23 Identities=48% Similarity=0.647 Sum_probs=20.7
Q ss_pred CEEEEEcCCCCcHHHHHHHHHcc
Q 019702 123 KSILFVGRPGVGKTTVMREIARV 145 (337)
Q Consensus 123 ~~v~IiGpnGsGKTTLL~~l~gl 145 (337)
.++.|+|++||||||+.+.|+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999999873
No 421
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.15 E-value=0.0026 Score=58.07 Aligned_cols=22 Identities=23% Similarity=0.419 Sum_probs=20.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHHc
Q 019702 123 KSILFVGRPGVGKTTVMREIAR 144 (337)
Q Consensus 123 ~~v~IiGpnGsGKTTLL~~l~g 144 (337)
.+++|+|++||||||+.+.|+.
T Consensus 76 ~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999984
No 422
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=96.15 E-value=0.0029 Score=53.12 Aligned_cols=26 Identities=27% Similarity=0.340 Sum_probs=22.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcccccc
Q 019702 124 SILFVGRPGVGKTTVMREIARVLSDE 149 (337)
Q Consensus 124 ~v~IiGpnGsGKTTLL~~l~gll~~~ 149 (337)
.++|+|++|+|||||++.+.+.....
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~~~ 41 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVPEG 41 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSCGG
T ss_pred EEEEECCCCCCHHHHHHHHHhhcccc
Confidence 58999999999999999999876543
No 423
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=96.14 E-value=0.0027 Score=52.41 Aligned_cols=23 Identities=22% Similarity=0.524 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHccc
Q 019702 124 SILFVGRPGVGKTTVMREIARVL 146 (337)
Q Consensus 124 ~v~IiGpnGsGKTTLL~~l~gll 146 (337)
.++|+|++|+|||||++.+.+-.
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998754
No 424
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=96.13 E-value=0.035 Score=51.29 Aligned_cols=34 Identities=18% Similarity=0.204 Sum_probs=27.2
Q ss_pred hhhhhhcccCCC--EEEEEcCCCCcHHHHHHHHHcc
Q 019702 112 IDMVYDLLHYGK--SILFVGRPGVGKTTVMREIARV 145 (337)
Q Consensus 112 ~~~l~~~v~~g~--~v~IiGpnGsGKTTLL~~l~gl 145 (337)
++.+...++.|. .+++.||+|+||||+.++++.-
T Consensus 6 ~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~ 41 (305)
T 2gno_A 6 LETLKRIIEKSEGISILINGEDLSYPREVSLELPEY 41 (305)
T ss_dssp HHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 455555666655 7899999999999999999863
No 425
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=96.13 E-value=0.0075 Score=58.70 Aligned_cols=39 Identities=28% Similarity=0.571 Sum_probs=31.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEcCC
Q 019702 122 GKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTS 160 (337)
Q Consensus 122 g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~~~ 160 (337)
..+++++|++|+||||+...|+..+....+.++.+++..
T Consensus 100 ~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D 138 (433)
T 2xxa_A 100 PAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSAD 138 (433)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecC
Confidence 458999999999999999999988865436778877654
No 426
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.13 E-value=0.017 Score=50.11 Aligned_cols=121 Identities=16% Similarity=0.060 Sum_probs=61.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEcCCc---ccc---cCCCC--cccccccchhccCCCcc------h
Q 019702 122 GKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSN---EIG---GDGDI--PHSAIGTARRMQVPEPS------L 187 (337)
Q Consensus 122 g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~~~~---ei~---~~~~~--~~~~~~~~~~~~~~S~g------~ 187 (337)
...+.|.++||.||||..-.++=-.- ..+.+|.++.--. ..+ ....+ .-...+. .+ ..+.. .
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~-g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~--gf-~~~~~~~~~~~~ 103 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAV-GHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMAT--GF-TWETQNREADTA 103 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHH-HTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCT--TC-CCCGGGHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH-HCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEccc--cc-ccCCCCcHHHHH
Confidence 35788899999999999766654332 2367777762111 000 00000 0000000 00 01111 1
Q ss_pred hHHHHH--HHHHh--hCCcEEEEcCCCCHHH-----HHHHH-HHHhc--CCeEEEEEcCcc-hhHHhhchHH
Q 019702 188 QHKVMI--EAVEN--HMPEVIIVDEIGTEAE-----AHACR-SIAER--GVMLIGTAHGEW-LENIIKNPIL 246 (337)
Q Consensus 188 k~r~~i--a~al~--~~P~vlilDEp~~~ld-----~~~l~-~~~~~--G~tvi~t~H~~~-~~~~~~d~v~ 246 (337)
..+.++ ++... .+.|+|||||+...+. .+.+. -+.++ ...||+|+.... ....+||-|-
T Consensus 104 ~a~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap~~l~e~AD~VT 175 (196)
T 1g5t_A 104 ACMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCHRDILDLADTVS 175 (196)
T ss_dssp HHHHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCCHHHHHHCSEEE
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCcHHHHHhCccee
Confidence 111222 22233 4589999999977544 33333 33332 578888887764 3444666555
No 427
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=96.13 E-value=0.0043 Score=54.51 Aligned_cols=29 Identities=31% Similarity=0.379 Sum_probs=26.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHcccccc
Q 019702 121 YGKSILFVGRPGVGKTTVMREIARVLSDE 149 (337)
Q Consensus 121 ~g~~v~IiGpnGsGKTTLL~~l~gll~~~ 149 (337)
+|.++.|.|++||||||.++.|...+...
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~ 30 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLEQL 30 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 47899999999999999999999988654
No 428
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=96.13 E-value=0.0027 Score=52.77 Aligned_cols=23 Identities=26% Similarity=0.453 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHccc
Q 019702 124 SILFVGRPGVGKTTVMREIARVL 146 (337)
Q Consensus 124 ~v~IiGpnGsGKTTLL~~l~gll 146 (337)
.++|+|++|+|||||++.+.+--
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhhCC
Confidence 58999999999999999998743
No 429
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=96.10 E-value=0.0029 Score=52.47 Aligned_cols=23 Identities=17% Similarity=0.485 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHccc
Q 019702 124 SILFVGRPGVGKTTVMREIARVL 146 (337)
Q Consensus 124 ~v~IiGpnGsGKTTLL~~l~gll 146 (337)
.++|+|++|+|||||++.+.+--
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998753
No 430
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=96.10 E-value=0.0029 Score=51.54 Aligned_cols=22 Identities=36% Similarity=0.517 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcc
Q 019702 124 SILFVGRPGVGKTTVMREIARV 145 (337)
Q Consensus 124 ~v~IiGpnGsGKTTLL~~l~gl 145 (337)
.++++|++|+|||||++.+.+-
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3789999999999999999764
No 431
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.09 E-value=0.0031 Score=54.42 Aligned_cols=23 Identities=26% Similarity=0.416 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHccc
Q 019702 124 SILFVGRPGVGKTTVMREIARVL 146 (337)
Q Consensus 124 ~v~IiGpnGsGKTTLL~~l~gll 146 (337)
.++|+|++|+|||||++.+.+-.
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999999865
No 432
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.08 E-value=0.0025 Score=55.90 Aligned_cols=28 Identities=14% Similarity=0.258 Sum_probs=24.4
Q ss_pred ccCCCEEEEEcCCCCcHHHHHHHHHccc
Q 019702 119 LHYGKSILFVGRPGVGKTTVMREIARVL 146 (337)
Q Consensus 119 v~~g~~v~IiGpnGsGKTTLL~~l~gll 146 (337)
+++...++|.||||+||||+..+|+..+
T Consensus 55 iPkkn~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 55 TPKKNCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp CTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 4445579999999999999999999987
No 433
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.08 E-value=0.0017 Score=54.07 Aligned_cols=23 Identities=35% Similarity=0.546 Sum_probs=20.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHc
Q 019702 122 GKSILFVGRPGVGKTTVMREIAR 144 (337)
Q Consensus 122 g~~v~IiGpnGsGKTTLL~~l~g 144 (337)
.-.++|+|++|+|||||++.+.+
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCC
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 44799999999999999999874
No 434
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=96.08 E-value=0.0029 Score=52.80 Aligned_cols=23 Identities=22% Similarity=0.531 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHccc
Q 019702 124 SILFVGRPGVGKTTVMREIARVL 146 (337)
Q Consensus 124 ~v~IiGpnGsGKTTLL~~l~gll 146 (337)
.++|+|++|+|||||++.+.+-.
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998754
No 435
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.08 E-value=0.003 Score=52.34 Aligned_cols=23 Identities=30% Similarity=0.562 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHccc
Q 019702 124 SILFVGRPGVGKTTVMREIARVL 146 (337)
Q Consensus 124 ~v~IiGpnGsGKTTLL~~l~gll 146 (337)
.++|+|++|+|||||++.+.+-.
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 58999999999999999998754
No 436
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=96.07 E-value=0.003 Score=53.11 Aligned_cols=23 Identities=26% Similarity=0.499 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHccc
Q 019702 124 SILFVGRPGVGKTTVMREIARVL 146 (337)
Q Consensus 124 ~v~IiGpnGsGKTTLL~~l~gll 146 (337)
.++++|++|+|||||++.+++-.
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998753
No 437
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.07 E-value=0.0014 Score=60.77 Aligned_cols=36 Identities=28% Similarity=0.451 Sum_probs=28.7
Q ss_pred hhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHcccc
Q 019702 112 IDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLS 147 (337)
Q Consensus 112 ~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~ 147 (337)
...+...+..|..++|.||+|+|||||++.++..+.
T Consensus 36 ~~~l~~~l~~~~~vll~G~pGtGKT~la~~la~~~~ 71 (331)
T 2r44_A 36 INRLLIGICTGGHILLEGVPGLAKTLSVNTLAKTMD 71 (331)
T ss_dssp HHHHHHHHHHTCCEEEESCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 334444455578899999999999999999999774
No 438
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.07 E-value=0.0029 Score=59.59 Aligned_cols=25 Identities=32% Similarity=0.445 Sum_probs=22.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHHcccc
Q 019702 123 KSILFVGRPGVGKTTVMREIARVLS 147 (337)
Q Consensus 123 ~~v~IiGpnGsGKTTLL~~l~gll~ 147 (337)
.+++|+||+|||||||.+.|+..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 3789999999999999999998764
No 439
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=96.05 E-value=0.003 Score=58.47 Aligned_cols=24 Identities=29% Similarity=0.585 Sum_probs=22.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHHccc
Q 019702 123 KSILFVGRPGVGKTTVMREIARVL 146 (337)
Q Consensus 123 ~~v~IiGpnGsGKTTLL~~l~gll 146 (337)
.+++|+|++|+|||||++.|.|.-
T Consensus 11 g~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 11 GYVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 589999999999999999999853
No 440
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=96.05 E-value=0.0027 Score=58.61 Aligned_cols=35 Identities=20% Similarity=0.226 Sum_probs=28.3
Q ss_pred hhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHccc
Q 019702 112 IDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVL 146 (337)
Q Consensus 112 ~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll 146 (337)
++.+...+..|..++|.||.|+|||||++.+....
T Consensus 21 l~~L~~~l~~~~~v~i~G~~G~GKT~Ll~~~~~~~ 55 (350)
T 2qen_A 21 SRKLEESLENYPLTLLLGIRRVGKSSLLRAFLNER 55 (350)
T ss_dssp HHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHS
T ss_pred HHHHHHHHhcCCeEEEECCCcCCHHHHHHHHHHHc
Confidence 45555556567899999999999999999998654
No 441
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=96.05 E-value=0.0032 Score=56.70 Aligned_cols=23 Identities=30% Similarity=0.613 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHccc
Q 019702 124 SILFVGRPGVGKTTVMREIARVL 146 (337)
Q Consensus 124 ~v~IiGpnGsGKTTLL~~l~gll 146 (337)
.++|+|++|||||||++.++|.-
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999863
No 442
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=96.04 E-value=0.0035 Score=58.74 Aligned_cols=28 Identities=36% Similarity=0.735 Sum_probs=24.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHccccc
Q 019702 121 YGKSILFVGRPGVGKTTVMREIARVLSD 148 (337)
Q Consensus 121 ~g~~v~IiGpnGsGKTTLL~~l~gll~~ 148 (337)
++..++|.||+|+||||+++.++..+..
T Consensus 69 ~~~~vLl~GppGtGKT~la~~la~~l~~ 96 (368)
T 3uk6_A 69 AGRAVLIAGQPGTGKTAIAMGMAQALGP 96 (368)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 4568999999999999999999998864
No 443
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=96.03 E-value=0.0032 Score=53.49 Aligned_cols=23 Identities=26% Similarity=0.453 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHccc
Q 019702 124 SILFVGRPGVGKTTVMREIARVL 146 (337)
Q Consensus 124 ~v~IiGpnGsGKTTLL~~l~gll 146 (337)
.++|+|++|+|||||++.+.+-.
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999998653
No 444
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=96.02 E-value=0.0032 Score=53.55 Aligned_cols=23 Identities=30% Similarity=0.628 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHccc
Q 019702 124 SILFVGRPGVGKTTVMREIARVL 146 (337)
Q Consensus 124 ~v~IiGpnGsGKTTLL~~l~gll 146 (337)
.++|+|++|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998754
No 445
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.02 E-value=0.0034 Score=54.30 Aligned_cols=34 Identities=18% Similarity=0.304 Sum_probs=26.7
Q ss_pred CEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEc
Q 019702 123 KSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD 158 (337)
Q Consensus 123 ~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~ 158 (337)
..++|+|++|||||||++.|++..... .++.++.
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~~~~--~~~~~i~ 64 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERIGNE--VKIGAML 64 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHTTT--SCEEEEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhccC--CeEEEEe
Confidence 478999999999999999999876432 4555554
No 446
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.00 E-value=0.0033 Score=53.03 Aligned_cols=22 Identities=23% Similarity=0.519 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcc
Q 019702 124 SILFVGRPGVGKTTVMREIARV 145 (337)
Q Consensus 124 ~v~IiGpnGsGKTTLL~~l~gl 145 (337)
.++|+|++|+|||||++.+.+-
T Consensus 10 ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHcC
Confidence 5899999999999999999874
No 447
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=95.99 E-value=0.0036 Score=55.92 Aligned_cols=23 Identities=35% Similarity=0.598 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHccc
Q 019702 124 SILFVGRPGVGKTTVMREIARVL 146 (337)
Q Consensus 124 ~v~IiGpnGsGKTTLL~~l~gll 146 (337)
.++|+|++|||||||++.|.+.-
T Consensus 24 ~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 24 RIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEECTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999854
No 448
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.99 E-value=0.0035 Score=58.68 Aligned_cols=25 Identities=28% Similarity=0.502 Sum_probs=22.3
Q ss_pred CEEEEEcCCCCcHHHHHHHHHcccc
Q 019702 123 KSILFVGRPGVGKTTVMREIARVLS 147 (337)
Q Consensus 123 ~~v~IiGpnGsGKTTLL~~l~gll~ 147 (337)
..++|+||+||||||+.+.|+..+.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999998763
No 449
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=95.99 E-value=0.0034 Score=52.68 Aligned_cols=23 Identities=30% Similarity=0.479 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHccc
Q 019702 124 SILFVGRPGVGKTTVMREIARVL 146 (337)
Q Consensus 124 ~v~IiGpnGsGKTTLL~~l~gll 146 (337)
.++|+|++|+|||||++.+.+-.
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKDC 31 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998753
No 450
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=95.98 E-value=0.0035 Score=52.22 Aligned_cols=23 Identities=26% Similarity=0.531 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHccc
Q 019702 124 SILFVGRPGVGKTTVMREIARVL 146 (337)
Q Consensus 124 ~v~IiGpnGsGKTTLL~~l~gll 146 (337)
.++|+|++|+|||||++.+.+-.
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~~ 42 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQKI 42 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999998653
No 451
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=95.98 E-value=0.0035 Score=53.07 Aligned_cols=23 Identities=22% Similarity=0.514 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHccc
Q 019702 124 SILFVGRPGVGKTTVMREIARVL 146 (337)
Q Consensus 124 ~v~IiGpnGsGKTTLL~~l~gll 146 (337)
.++|+|++|+|||||++.+.+-.
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998754
No 452
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=95.97 E-value=0.0035 Score=52.75 Aligned_cols=23 Identities=30% Similarity=0.485 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHccc
Q 019702 124 SILFVGRPGVGKTTVMREIARVL 146 (337)
Q Consensus 124 ~v~IiGpnGsGKTTLL~~l~gll 146 (337)
.++|+|++|+|||||++.+.+--
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998754
No 453
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=95.97 E-value=0.0037 Score=57.80 Aligned_cols=23 Identities=35% Similarity=0.663 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHccc
Q 019702 124 SILFVGRPGVGKTTVMREIARVL 146 (337)
Q Consensus 124 ~v~IiGpnGsGKTTLL~~l~gll 146 (337)
.++|+|.+|+|||||++.|.|.-
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~~ 31 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGVK 31 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 69999999999999999999853
No 454
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=95.97 E-value=0.0035 Score=52.75 Aligned_cols=23 Identities=30% Similarity=0.598 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHccc
Q 019702 124 SILFVGRPGVGKTTVMREIARVL 146 (337)
Q Consensus 124 ~v~IiGpnGsGKTTLL~~l~gll 146 (337)
.++|+|++|+|||||++.+.+-.
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999999754
No 455
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=95.97 E-value=0.0031 Score=57.38 Aligned_cols=26 Identities=42% Similarity=0.770 Sum_probs=23.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHcccc
Q 019702 122 GKSILFVGRPGVGKTTVMREIARVLS 147 (337)
Q Consensus 122 g~~v~IiGpnGsGKTTLL~~l~gll~ 147 (337)
+..++|.||+|+||||+++.++..+.
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l~ 75 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLAN 75 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhC
Confidence 45789999999999999999999873
No 456
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=95.95 E-value=0.0034 Score=52.54 Aligned_cols=25 Identities=24% Similarity=0.397 Sum_probs=21.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHccc
Q 019702 122 GKSILFVGRPGVGKTTVMREIARVL 146 (337)
Q Consensus 122 g~~v~IiGpnGsGKTTLL~~l~gll 146 (337)
.-.++|+|++|+|||||++.+.+-.
T Consensus 18 ~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 18 ELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC
Confidence 3468999999999999999998754
No 457
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=95.94 E-value=0.0037 Score=51.93 Aligned_cols=22 Identities=27% Similarity=0.374 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcc
Q 019702 124 SILFVGRPGVGKTTVMREIARV 145 (337)
Q Consensus 124 ~v~IiGpnGsGKTTLL~~l~gl 145 (337)
.++|+|++|+|||||++.+.+-
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 458
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.91 E-value=0.0043 Score=59.92 Aligned_cols=26 Identities=31% Similarity=0.447 Sum_probs=22.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHccc
Q 019702 121 YGKSILFVGRPGVGKTTVMREIARVL 146 (337)
Q Consensus 121 ~g~~v~IiGpnGsGKTTLL~~l~gll 146 (337)
...++.|+|++||||||+.+.|+..+
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 45789999999999999999998754
No 459
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=95.91 E-value=0.004 Score=52.94 Aligned_cols=23 Identities=35% Similarity=0.488 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHccc
Q 019702 124 SILFVGRPGVGKTTVMREIARVL 146 (337)
Q Consensus 124 ~v~IiGpnGsGKTTLL~~l~gll 146 (337)
.++|+|++|+|||||++.+.+--
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998754
No 460
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=95.91 E-value=0.004 Score=52.58 Aligned_cols=22 Identities=18% Similarity=0.276 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcc
Q 019702 124 SILFVGRPGVGKTTVMREIARV 145 (337)
Q Consensus 124 ~v~IiGpnGsGKTTLL~~l~gl 145 (337)
.++|+|++|+|||||++.+.+-
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999776654
No 461
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=95.90 E-value=0.0039 Score=51.83 Aligned_cols=21 Identities=24% Similarity=0.449 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 019702 124 SILFVGRPGVGKTTVMREIAR 144 (337)
Q Consensus 124 ~v~IiGpnGsGKTTLL~~l~g 144 (337)
.++|+|++|+|||||++.+.+
T Consensus 8 ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 589999999999999999984
No 462
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=95.88 E-value=0.0031 Score=56.03 Aligned_cols=30 Identities=37% Similarity=0.491 Sum_probs=23.3
Q ss_pred ccCCCEEEEEcCCCCcHHHHHHHHHccccc
Q 019702 119 LHYGKSILFVGRPGVGKTTVMREIARVLSD 148 (337)
Q Consensus 119 v~~g~~v~IiGpnGsGKTTLL~~l~gll~~ 148 (337)
..+|.++.|.|++||||||+++.|+..+..
T Consensus 22 m~~g~~I~~eG~~GsGKsT~~~~l~~~l~~ 51 (227)
T 3v9p_A 22 MARGKFITFEGIDGAGKTTHLQWFCDRLQE 51 (227)
T ss_dssp -CCCCEEEEECCC---CHHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 357889999999999999999999988854
No 463
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=95.88 E-value=0.0043 Score=54.94 Aligned_cols=26 Identities=19% Similarity=0.396 Sum_probs=23.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHcccc
Q 019702 122 GKSILFVGRPGVGKTTVMREIARVLS 147 (337)
Q Consensus 122 g~~v~IiGpnGsGKTTLL~~l~gll~ 147 (337)
|.++.|.|+.||||||+++.|+..++
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 56899999999999999999998774
No 464
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=95.88 E-value=0.0039 Score=53.12 Aligned_cols=23 Identities=22% Similarity=0.374 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHccc
Q 019702 124 SILFVGRPGVGKTTVMREIARVL 146 (337)
Q Consensus 124 ~v~IiGpnGsGKTTLL~~l~gll 146 (337)
.++|+|++|+|||||++.+.+-.
T Consensus 26 ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 26 KVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCcCHHHHHHHHHhCC
Confidence 58999999999999999999854
No 465
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=95.88 E-value=0.0042 Score=52.28 Aligned_cols=23 Identities=26% Similarity=0.401 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHccc
Q 019702 124 SILFVGRPGVGKTTVMREIARVL 146 (337)
Q Consensus 124 ~v~IiGpnGsGKTTLL~~l~gll 146 (337)
.++|+|++|+|||||++.+.+-.
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~~ 44 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAGR 44 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998643
No 466
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.87 E-value=0.0024 Score=58.76 Aligned_cols=36 Identities=22% Similarity=0.398 Sum_probs=23.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEc
Q 019702 122 GKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD 158 (337)
Q Consensus 122 g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~ 158 (337)
+-+++|.||+||||||+.+.|+..+... +..+.+++
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~~lg~~-~~~~~vI~ 40 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQIFRRE-GVKAVSIE 40 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHHHHHHH-TCCEEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHhhc-CCCeeEee
Confidence 4589999999999999999999866432 23344444
No 467
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=95.87 E-value=0.0041 Score=56.04 Aligned_cols=23 Identities=26% Similarity=0.547 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHccc
Q 019702 124 SILFVGRPGVGKTTVMREIARVL 146 (337)
Q Consensus 124 ~v~IiGpnGsGKTTLL~~l~gll 146 (337)
.++|+|++|||||||++.++|..
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999854
No 468
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=95.86 E-value=0.004 Score=54.02 Aligned_cols=25 Identities=28% Similarity=0.461 Sum_probs=22.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHccc
Q 019702 122 GKSILFVGRPGVGKTTVMREIARVL 146 (337)
Q Consensus 122 g~~v~IiGpnGsGKTTLL~~l~gll 146 (337)
+.+++|+|++||||||+.+.|+..+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 3478999999999999999998865
No 469
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.86 E-value=0.0041 Score=52.48 Aligned_cols=23 Identities=30% Similarity=0.482 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHccc
Q 019702 124 SILFVGRPGVGKTTVMREIARVL 146 (337)
Q Consensus 124 ~v~IiGpnGsGKTTLL~~l~gll 146 (337)
.++|+|++|+|||||++.+.+-.
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 58999999999999999998754
No 470
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=95.85 E-value=0.0061 Score=54.22 Aligned_cols=37 Identities=35% Similarity=0.580 Sum_probs=30.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEcCC
Q 019702 122 GKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTS 160 (337)
Q Consensus 122 g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~~~ 160 (337)
.-++.++|..|+|||||+..|+..+. . +.++.+++..
T Consensus 14 ~~i~~~~GkgGvGKTTl~~~La~~l~-~-g~~v~vvd~D 50 (262)
T 1yrb_A 14 SMIVVFVGTAGSGKTTLTGEFGRYLE-D-NYKVAYVNLD 50 (262)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHT-T-TSCEEEEECC
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHHH-C-CCeEEEEeCC
Confidence 35789999999999999999998887 4 6788877643
No 471
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=95.85 E-value=0.0041 Score=53.06 Aligned_cols=23 Identities=26% Similarity=0.587 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHccc
Q 019702 124 SILFVGRPGVGKTTVMREIARVL 146 (337)
Q Consensus 124 ~v~IiGpnGsGKTTLL~~l~gll 146 (337)
.++|+|++|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998754
No 472
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=95.85 E-value=0.0067 Score=52.82 Aligned_cols=36 Identities=33% Similarity=0.469 Sum_probs=28.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHccccccCCCeEEEEcC
Q 019702 122 GKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDT 159 (337)
Q Consensus 122 g~~v~IiGpnGsGKTTLL~~l~gll~~~~~~~i~~v~~ 159 (337)
|.+|.|-|+.||||||+++.|...+.. +..+....+
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~~--~~~v~~~~e 37 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLVK--DYDVIMTRE 37 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHTT--TSCEEEEES
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHC--CCCEEEeeC
Confidence 568999999999999999999998854 445554433
No 473
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=95.84 E-value=0.0031 Score=62.58 Aligned_cols=36 Identities=22% Similarity=0.474 Sum_probs=29.7
Q ss_pred hhhhhhcccCCCEEEEEcCCCCcHHHHHHHHHcccc
Q 019702 112 IDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLS 147 (337)
Q Consensus 112 ~~~l~~~v~~g~~v~IiGpnGsGKTTLL~~l~gll~ 147 (337)
.+.+...+..|..++|.||||+|||+|.++|+..+.
T Consensus 31 i~~l~~al~~~~~VLL~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 31 IRLCLLAALSGESVFLLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp HHHHHHHHHHTCEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred HHHHHHHHhcCCeeEeecCchHHHHHHHHHHHHHHh
Confidence 344444566788999999999999999999999874
No 474
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=95.84 E-value=0.0043 Score=52.04 Aligned_cols=23 Identities=30% Similarity=0.613 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHccc
Q 019702 124 SILFVGRPGVGKTTVMREIARVL 146 (337)
Q Consensus 124 ~v~IiGpnGsGKTTLL~~l~gll 146 (337)
.++|+|++|+|||||++.+.+-.
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998754
No 475
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.83 E-value=0.0048 Score=57.49 Aligned_cols=26 Identities=35% Similarity=0.438 Sum_probs=22.6
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHcccc
Q 019702 122 GKSILFVGRPGVGKTTVMREIARVLS 147 (337)
Q Consensus 122 g~~v~IiGpnGsGKTTLL~~l~gll~ 147 (337)
+.+++|+||+|||||||...|+..++
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~ 28 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLN 28 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCc
Confidence 45789999999999999999987653
No 476
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=95.83 E-value=0.0044 Score=51.36 Aligned_cols=23 Identities=26% Similarity=0.306 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHccc
Q 019702 124 SILFVGRPGVGKTTVMREIARVL 146 (337)
Q Consensus 124 ~v~IiGpnGsGKTTLL~~l~gll 146 (337)
.++|+|++|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKssl~~~~~~~~ 32 (182)
T 3bwd_D 10 KCVTVGDGAVGKTCLLISYTSNT 32 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998643
No 477
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=95.83 E-value=0.0044 Score=52.30 Aligned_cols=23 Identities=22% Similarity=0.508 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHccc
Q 019702 124 SILFVGRPGVGKTTVMREIARVL 146 (337)
Q Consensus 124 ~v~IiGpnGsGKTTLL~~l~gll 146 (337)
.++|+|++|+|||||++.+.+--
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998753
No 478
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=95.83 E-value=0.0039 Score=58.74 Aligned_cols=26 Identities=38% Similarity=0.622 Sum_probs=23.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHccc
Q 019702 121 YGKSILFVGRPGVGKTTVMREIARVL 146 (337)
Q Consensus 121 ~g~~v~IiGpnGsGKTTLL~~l~gll 146 (337)
++..++|.||||+||||+.++|+..+
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 45679999999999999999999987
No 479
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=95.83 E-value=0.0045 Score=56.80 Aligned_cols=23 Identities=30% Similarity=0.472 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHccc
Q 019702 124 SILFVGRPGVGKTTVMREIARVL 146 (337)
Q Consensus 124 ~v~IiGpnGsGKTTLL~~l~gll 146 (337)
.++|+|++|||||||++.|+|.-
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCC
Confidence 69999999999999999999974
No 480
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.82 E-value=0.0045 Score=51.95 Aligned_cols=23 Identities=26% Similarity=0.514 Sum_probs=20.6
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHc
Q 019702 122 GKSILFVGRPGVGKTTVMREIAR 144 (337)
Q Consensus 122 g~~v~IiGpnGsGKTTLL~~l~g 144 (337)
.-.++|+|++|+|||||++.+.+
T Consensus 16 ~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 16 EHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHT
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 34789999999999999999985
No 481
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=95.82 E-value=0.0031 Score=59.77 Aligned_cols=22 Identities=27% Similarity=0.573 Sum_probs=20.0
Q ss_pred EEEEcCCCCcHHHHHHHHHccc
Q 019702 125 ILFVGRPGVGKTTVMREIARVL 146 (337)
Q Consensus 125 v~IiGpnGsGKTTLL~~l~gll 146 (337)
++|+|++|+|||||++.|.+..
T Consensus 40 I~vvG~~g~GKSTLln~L~~~~ 61 (361)
T 2qag_A 40 LMVVGESGLGKSTLINSLFLTD 61 (361)
T ss_dssp EEECCCTTSCHHHHHHHHTTCC
T ss_pred EEEEcCCCCCHHHHHHHHhCCC
Confidence 6999999999999999998764
No 482
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=95.82 E-value=0.0047 Score=56.10 Aligned_cols=23 Identities=30% Similarity=0.573 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHccc
Q 019702 124 SILFVGRPGVGKTTVMREIARVL 146 (337)
Q Consensus 124 ~v~IiGpnGsGKTTLL~~l~gll 146 (337)
.++|+|.+|||||||++.++|..
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999864
No 483
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=95.81 E-value=0.0045 Score=52.83 Aligned_cols=23 Identities=22% Similarity=0.517 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHccc
Q 019702 124 SILFVGRPGVGKTTVMREIARVL 146 (337)
Q Consensus 124 ~v~IiGpnGsGKTTLL~~l~gll 146 (337)
.++|+|++|+|||||++.+.+-.
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIENK 49 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC--
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 58999999999999999998643
No 484
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=95.81 E-value=0.0041 Score=59.26 Aligned_cols=22 Identities=36% Similarity=0.631 Sum_probs=20.5
Q ss_pred EEEEcCCCCcHHHHHHHHHccc
Q 019702 125 ILFVGRPGVGKTTVMREIARVL 146 (337)
Q Consensus 125 v~IiGpnGsGKTTLL~~l~gll 146 (337)
++|+|+||+|||||++.|++.-
T Consensus 4 v~IVG~pnvGKSTL~n~L~~~~ 25 (368)
T 2dby_A 4 VGIVGLPNVGKSTLFNALTRAN 25 (368)
T ss_dssp EEEECCSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7899999999999999999864
No 485
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=95.80 E-value=0.0046 Score=52.10 Aligned_cols=24 Identities=33% Similarity=0.295 Sum_probs=21.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHHccc
Q 019702 123 KSILFVGRPGVGKTTVMREIARVL 146 (337)
Q Consensus 123 ~~v~IiGpnGsGKTTLL~~l~gll 146 (337)
-.++|+|++|+|||||++.+.+--
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~~~ 46 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIASGQ 46 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHcCC
Confidence 368999999999999999998643
No 486
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.80 E-value=0.0047 Score=52.35 Aligned_cols=22 Identities=27% Similarity=0.546 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcc
Q 019702 124 SILFVGRPGVGKTTVMREIARV 145 (337)
Q Consensus 124 ~v~IiGpnGsGKTTLL~~l~gl 145 (337)
.++|+|++|+|||||++.+.+-
T Consensus 30 ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 30 KLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999875
No 487
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=95.78 E-value=0.0033 Score=53.67 Aligned_cols=23 Identities=30% Similarity=0.628 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHccc
Q 019702 124 SILFVGRPGVGKTTVMREIARVL 146 (337)
Q Consensus 124 ~v~IiGpnGsGKTTLL~~l~gll 146 (337)
.++|+|++|+|||||++.+++..
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~~ 47 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGLQ 47 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 58999999999999999997643
No 488
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=95.78 E-value=0.0047 Score=52.57 Aligned_cols=24 Identities=21% Similarity=0.443 Sum_probs=21.2
Q ss_pred CEEEEEcCCCCcHHHHHHHHHccc
Q 019702 123 KSILFVGRPGVGKTTVMREIARVL 146 (337)
Q Consensus 123 ~~v~IiGpnGsGKTTLL~~l~gll 146 (337)
-.++|+|++|+|||||++.+.+-.
T Consensus 29 ~ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 29 YKIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC
Confidence 368999999999999999998754
No 489
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.78 E-value=0.0047 Score=52.79 Aligned_cols=23 Identities=30% Similarity=0.583 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHccc
Q 019702 124 SILFVGRPGVGKTTVMREIARVL 146 (337)
Q Consensus 124 ~v~IiGpnGsGKTTLL~~l~gll 146 (337)
.++|+|++|+|||||++.+.+--
T Consensus 22 ~i~v~G~~~~GKSsli~~l~~~~ 44 (213)
T 3cph_A 22 KILLIGDSGVGKSCLLVRFVEDK 44 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 68999999999999999998643
No 490
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=95.76 E-value=0.0042 Score=51.93 Aligned_cols=22 Identities=27% Similarity=0.507 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcc
Q 019702 124 SILFVGRPGVGKTTVMREIARV 145 (337)
Q Consensus 124 ~v~IiGpnGsGKTTLL~~l~gl 145 (337)
.++|+|++|+|||||++.+.+-
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999874
No 491
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=95.76 E-value=0.0041 Score=52.66 Aligned_cols=23 Identities=30% Similarity=0.631 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHccc
Q 019702 124 SILFVGRPGVGKTTVMREIARVL 146 (337)
Q Consensus 124 ~v~IiGpnGsGKTTLL~~l~gll 146 (337)
.++|+|++|+|||||++.+.+-.
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998743
No 492
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=95.75 E-value=0.0054 Score=54.03 Aligned_cols=29 Identities=34% Similarity=0.339 Sum_probs=26.3
Q ss_pred cCCCEEEEEcCCCCcHHHHHHHHHccccc
Q 019702 120 HYGKSILFVGRPGVGKTTVMREIARVLSD 148 (337)
Q Consensus 120 ~~g~~v~IiGpnGsGKTTLL~~l~gll~~ 148 (337)
.+|.++.|.|++||||||+++.|...+..
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 36889999999999999999999998864
No 493
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=95.74 E-value=0.0036 Score=52.70 Aligned_cols=24 Identities=25% Similarity=0.400 Sum_probs=21.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHHccc
Q 019702 123 KSILFVGRPGVGKTTVMREIARVL 146 (337)
Q Consensus 123 ~~v~IiGpnGsGKTTLL~~l~gll 146 (337)
-.++|+|++|+|||||++.+.+..
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 22 VHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEEECTTSSHHHHHHHTSCGG
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999998865
No 494
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=95.74 E-value=0.0054 Score=52.25 Aligned_cols=25 Identities=16% Similarity=0.307 Sum_probs=21.9
Q ss_pred cCCCEEEEEcCCCCcHHHHHHHHHc
Q 019702 120 HYGKSILFVGRPGVGKTTVMREIAR 144 (337)
Q Consensus 120 ~~g~~v~IiGpnGsGKTTLL~~l~g 144 (337)
-.|..++|.|++|+|||||...+..
T Consensus 14 v~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 14 IDKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp ETTEEEEEEESSSSSHHHHHHHHHH
T ss_pred ECCEEEEEEcCCCCCHHHHHHHHHH
Confidence 3577899999999999999988875
No 495
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=95.73 E-value=0.0051 Score=51.96 Aligned_cols=23 Identities=30% Similarity=0.449 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHccc
Q 019702 124 SILFVGRPGVGKTTVMREIARVL 146 (337)
Q Consensus 124 ~v~IiGpnGsGKTTLL~~l~gll 146 (337)
.++|+|++|+|||||++.+.+-.
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998754
No 496
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=95.73 E-value=0.0046 Score=56.01 Aligned_cols=22 Identities=27% Similarity=0.656 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcc
Q 019702 124 SILFVGRPGVGKTTVMREIARV 145 (337)
Q Consensus 124 ~v~IiGpnGsGKTTLL~~l~gl 145 (337)
.++|+|++|+|||||++.|.+.
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~ 31 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLT 31 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999998764
No 497
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.72 E-value=0.005 Score=52.98 Aligned_cols=23 Identities=39% Similarity=0.758 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHccc
Q 019702 124 SILFVGRPGVGKTTVMREIARVL 146 (337)
Q Consensus 124 ~v~IiGpnGsGKTTLL~~l~gll 146 (337)
.++|+|++|+|||||++.+.+-.
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~~ 50 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQGL 50 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 58999999999999999988654
No 498
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=95.71 E-value=0.018 Score=55.77 Aligned_cols=23 Identities=43% Similarity=0.703 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHccc
Q 019702 124 SILFVGRPGVGKTTVMREIARVL 146 (337)
Q Consensus 124 ~v~IiGpnGsGKTTLL~~l~gll 146 (337)
.++|+|++|+|||||++.|+|--
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~~~ 27 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAGER 27 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998853
No 499
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=95.70 E-value=0.0054 Score=52.76 Aligned_cols=23 Identities=35% Similarity=0.504 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHccc
Q 019702 124 SILFVGRPGVGKTTVMREIARVL 146 (337)
Q Consensus 124 ~v~IiGpnGsGKTTLL~~l~gll 146 (337)
.++|+|++|+|||||++.+.+-.
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998753
No 500
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=95.70 E-value=0.0053 Score=52.24 Aligned_cols=22 Identities=36% Similarity=0.681 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcc
Q 019702 124 SILFVGRPGVGKTTVMREIARV 145 (337)
Q Consensus 124 ~v~IiGpnGsGKTTLL~~l~gl 145 (337)
.++|+|++|+|||||++.+.+.
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999863
Done!