BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019703
(337 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin
pdb|1GP6|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin (With 30 Min Exposure To O2)
Length = 356
Score = 163 bits (413), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 106/330 (32%), Positives = 164/330 (49%), Gaps = 45/330 (13%)
Query: 16 IIVPSVQELTNETIINVPPRYVRTDQDPPSVTADTWL-------PSVPLIDLQKLVDD-- 66
+ V V+ L II++P Y+R ++ S+ D +L P VP IDL+ + D
Sbjct: 2 VAVERVESLAKSGIISIPKEYIRPKEELESIN-DVFLEEKKEDGPQVPTIDLKNIESDDE 60
Query: 67 -VRADELERLHSSCREWGFFQVINHGVSSSLLEKLKFEIENFFKLPYEEKKKLW--QVAD 123
+R + +E L + +WG +INHG+ + L+E++K E FF L EEK+K Q
Sbjct: 61 KIRENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATG 120
Query: 124 NHEGFGQLFVVSEEQKLDWETL---ESYSAEMKKLAM---------TILGHMAKALRMDG 171
+G+G + +L+WE +Y E + L++ AK LR+
Sbjct: 121 KIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLA 180
Query: 172 EEMRDLFSDGVQ------------------SMRMNYYPPCPQPDKVIGFSPHSDADALTI 213
++ S G+ M++NYYP CPQP+ +G H+D ALT
Sbjct: 181 TKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTF 240
Query: 214 LLQLDDTQGLQIRNQGRWVPVKPLPNAFVINIGDIMEIVSNGIYRSIEHRALVNSSKERL 273
+L + GLQ+ +G+WV K +P++ V++IGD +EI+SNG Y+SI HR LVN K R+
Sbjct: 241 ILH-NMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRI 299
Query: 274 SIATFYSSRIDS-ELGPAPSLIGPSNPAIF 302
S A F D L P P ++ +PA F
Sbjct: 300 SWAVFCEPPKDKIVLKPLPEMVSVESPAKF 329
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Naringenin
Length = 355
Score = 163 bits (413), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 106/330 (32%), Positives = 164/330 (49%), Gaps = 45/330 (13%)
Query: 16 IIVPSVQELTNETIINVPPRYVRTDQDPPSVTADTWL-------PSVPLIDLQKLVDD-- 66
+ V V+ L II++P Y+R ++ S+ D +L P VP IDL+ + D
Sbjct: 1 VAVERVESLAKSGIISIPKEYIRPKEELESIN-DVFLEEKKEDGPQVPTIDLKNIESDDE 59
Query: 67 -VRADELERLHSSCREWGFFQVINHGVSSSLLEKLKFEIENFFKLPYEEKKKLW--QVAD 123
+R + +E L + +WG +INHG+ + L+E++K E FF L EEK+K Q
Sbjct: 60 KIRENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATG 119
Query: 124 NHEGFGQLFVVSEEQKLDWETL---ESYSAEMKKLAM---------TILGHMAKALRMDG 171
+G+G + +L+WE +Y E + L++ AK LR+
Sbjct: 120 KIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLA 179
Query: 172 EEMRDLFSDGVQ------------------SMRMNYYPPCPQPDKVIGFSPHSDADALTI 213
++ S G+ M++NYYP CPQP+ +G H+D ALT
Sbjct: 180 TKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTF 239
Query: 214 LLQLDDTQGLQIRNQGRWVPVKPLPNAFVINIGDIMEIVSNGIYRSIEHRALVNSSKERL 273
+L + GLQ+ +G+WV K +P++ V++IGD +EI+SNG Y+SI HR LVN K R+
Sbjct: 240 ILH-NMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRI 298
Query: 274 SIATFYSSRIDS-ELGPAPSLIGPSNPAIF 302
S A F D L P P ++ +PA F
Sbjct: 299 SWAVFCEPPKDKIVLKPLPEMVSVESPAKF 328
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana
(Selenomethionine Substituted)
Length = 356
Score = 157 bits (397), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 105/330 (31%), Positives = 160/330 (48%), Gaps = 45/330 (13%)
Query: 16 IIVPSVQELTNETIINVPPRYVRTDQDPPSVTADTWL-------PSVPLIDLQKLVDD-- 66
+ V V+ L II++P Y+R ++ S+ D +L P VP IDL+ + D
Sbjct: 2 VAVERVESLAKSGIISIPKEYIRPKEELESIN-DVFLEEKKEDGPQVPTIDLKNIESDDE 60
Query: 67 -VRADELERLHSSCREWGFFQVINHGVSSSLLEKLKFEIENFFKLPYEEKKKLW--QVAD 123
+R + +E L + +WG +INHG+ + L E++K E FF L EEK+K Q
Sbjct: 61 KIRENCIEELKKASLDWGVXHLINHGIPADLXERVKKAGEEFFSLSVEEKEKYANDQATG 120
Query: 124 NHEGFGQLFVVSEEQKLDWETL---ESYSAEMKKLAM---------TILGHMAKALRMDG 171
+G+G + +L+WE +Y E + L++ AK LR+
Sbjct: 121 KIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLA 180
Query: 172 EEMRDLFSDGVQ------------------SMRMNYYPPCPQPDKVIGFSPHSDADALTI 213
++ S G+ ++NYYP CPQP+ +G H+D ALT
Sbjct: 181 TKVFKALSVGLGLEPDRLEKEVGGLEELLLQXKINYYPKCPQPELALGVEAHTDVSALTF 240
Query: 214 LLQLDDTQGLQIRNQGRWVPVKPLPNAFVINIGDIMEIVSNGIYRSIEHRALVNSSKERL 273
+L + GLQ+ +G+WV K +P++ V +IGD +EI+SNG Y+SI HR LVN K R+
Sbjct: 241 ILH-NXVPGLQLFYEGKWVTAKCVPDSIVXHIGDTLEILSNGKYKSILHRGLVNKEKVRI 299
Query: 274 SIATFYSSRIDS-ELGPAPSLIGPSNPAIF 302
S A F D L P P + +PA F
Sbjct: 300 SWAVFCEPPKDKIVLKPLPEXVSVESPAKF 329
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase
pdb|1WA6|X Chain X, The Structure Of Acc Oxidase
Length = 319
Score = 142 bits (357), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 79/298 (26%), Positives = 146/298 (48%), Gaps = 36/298 (12%)
Query: 56 PLIDLQKLVDDVRADELERLHSSCREWGFFQVINHGVSSSLLEKLKFEIENFFKLPYEEK 115
P+I L K+ RA E + +C WGFF+++NHG+ + + ++ + +K E++
Sbjct: 5 PIISLDKVNGVERAATXEXIKDACENWGFFELVNHGIPREVXDTVEKXTKGHYKKCXEQR 64
Query: 116 KKLWQVADNHEGFGQLFVVSEEQKLDWETL-------------------------ESYSA 150
K + EG V +E DWE+ ++
Sbjct: 65 FKELVASKALEG-----VQAEVTDXDWESTFFLKHLPISNISEVPDLDEEYREVXRDFAK 119
Query: 151 EMKKLAMTILGHMAKALRMDGEEMRDLF--SDGVQ-SMRMNYYPPCPQPDKVIGFSPHSD 207
++KLA +L + + L ++ +++ F S G +++ YPPCP+PD + G H+D
Sbjct: 120 RLEKLAEELLDLLCENLGLEKGYLKNAFYGSKGPNFGTKVSNYPPCPKPDLIKGLRAHTD 179
Query: 208 ADALTILLQLDDTQGLQIRNQGRWVPVKPLPNAFVINIGDIMEIVSNGIYRSIEHRALVN 267
A + +L Q D GLQ+ G+W+ V P ++ V+N+GD +E+++NG Y+S+ HR +
Sbjct: 180 AGGIILLFQDDKVSGLQLLKDGQWIDVPPXRHSIVVNLGDQLEVITNGKYKSVXHRVIAQ 239
Query: 268 SSKERLSIATFYSSRIDSELGPAPSLI---GPSNPAIFRRMPLEEYFKEFFARRLNGK 322
R S+A+FY+ D+ + PAP+L+ N ++ + ++Y K + + K
Sbjct: 240 KDGARXSLASFYNPGSDAVIYPAPALVEKEAEENKQVYPKFVFDDYXKLYAGLKFQAK 297
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
pdb|3OOX|B Chain B, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
Length = 312
Score = 71.6 bits (174), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 68/288 (23%), Positives = 116/288 (40%), Gaps = 46/288 (15%)
Query: 73 ERLHSSCREWGFFQVINHGVSSSLLEKLKFEIENFFKLPYEEKKKLWQVADNHEGF---- 128
+ L +S +GF + ++ + + ++ + FF LP E KK+ V G+
Sbjct: 24 QELGASFERYGFAVLSDYDLDQARIDAAVDSAKAFFALPVETKKQYAGVKGGARGYIPFG 83
Query: 129 ------------------------GQLFVVSEEQKLDWETLESYSAEMKKLAMTILGHMA 164
G F + + ++ ++ L ++ G
Sbjct: 84 VETAKGADHYDLKEFWHXGRDLPPGHRFRAHXADNVWPAEIPAFKHDVSWLYNSLDGXGG 143
Query: 165 KALRMDGEEM---RDLFS----DGVQSMRMNYYPPCPQPDKVIGFSPHSDADALTILLQL 217
K L + RD F DG +R+ +YPP P+ + H D + +T+LL
Sbjct: 144 KVLEAIATYLKLERDFFKPTVQDGNSVLRLLHYPPIPKDATGVRAGAHGDINTITLLLGA 203
Query: 218 DDTQGLQIRNQ-GRWVPVKPLPNAFVINIGDIMEIVSNGIYRSIEHRALVNSSKE----- 271
++ GL++ ++ G+W+P+ P P VINIGD +E ++N + S HR +VN E
Sbjct: 204 EEG-GLEVLDRDGQWLPINPPPGCLVINIGDXLERLTNNVLPSTVHR-VVNPPPERRGVP 261
Query: 272 RLSIATFYSSRIDSELGPAPSLIGPSNPAIFRRMPLEEYFKEFFARRL 319
R S F D E+ + + NP R P EF +RL
Sbjct: 262 RYSTPFFLHFASDYEIKTLQNCVTAENP---DRYPESITADEFLQQRL 306
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|B Chain B, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|C Chain C, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|D Chain D, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
Length = 280
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 64/264 (24%), Positives = 112/264 (42%), Gaps = 44/264 (16%)
Query: 64 VDDVRADELERLHSSCREWGFFQVINHGVSSSLLEKLKFEIENFFKLPYEEKKKLWQVAD 123
+D AD +R S RE GF + NH + L+E++ E + FF E K + +
Sbjct: 7 IDYRAADSAKRFVESLRETGFGVLSNHPIDKELVERIYTEWQAFFN--SEAKNEFXFNRE 64
Query: 124 NHEGFGQLFVVSEEQKLDWETLESYSAEM------KKLAMTILGHMAKALRMDGE----- 172
H+GF + + + ++ Y L IL + KA + E
Sbjct: 65 THDGFFPASISETAKGHTVKDIKEYYHVYPWGRIPDSLRANILAYYEKANTLASELLEWI 124
Query: 173 ------EMRDLFSDGVQS---------MRMNYYPPCPQPDK--VIGFSPHSDADALTILL 215
E++ FS + +R+ +YPP ++ I + H D + +T+L
Sbjct: 125 ETYSPDEIKAKFSIPLPEXIANSHKTLLRILHYPPXTGDEEXGAIRAAAHEDINLITVLP 184
Query: 216 QLDDTQGLQIRNQ-GRWVPVKPLPNAFVINIGDIMEIVSNGIYRSIEHRAL----VNSSK 270
++ GLQ++ + G W+ V +INIGD ++ S+G + S HR + + +K
Sbjct: 185 TANE-PGLQVKAKDGSWLDVPSDFGNIIINIGDXLQEASDGYFPSTSHRVINPEGTDKTK 243
Query: 271 ERLSIATFYSSRIDSELGPAPSLI 294
R+S+ F L P PS++
Sbjct: 244 SRISLPLF--------LHPHPSVV 259
>pdb|2BJS|A Chain A, Isopenicillin N Synthase C-Terminal Truncation Mutant
Length = 325
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 68/294 (23%), Positives = 114/294 (38%), Gaps = 63/294 (21%)
Query: 54 SVPLIDLQKLVDDVRADEL---ERLHSSCREWGFFQVINHGVSSSLLEKLKFEIENFFKL 110
+VP ID+ L D +A ++ +++ ++ R+ GFF +NHG++ L + E +
Sbjct: 8 NVPKIDVSPLFGDDQAAKMRVAQQIDAASRDTGFFYAVNHGINVQRLSQKTKEFH--MSI 65
Query: 111 PYEEKKKLWQVADNHEGFGQL---FVVSEEQKLDWETL---------------------- 145
EEK L A N E Q+ + +S K E+
Sbjct: 66 TPEEKWDLAIRAYNKEHQDQVRAGYYLSIPGKKAVESFCYLNPNFTPDHPRIQAKTPTHE 125
Query: 146 -----------------ESYSAEMKKLAMTILGHMAKALRMDGEEMRDLFS--DGVQSMR 186
E Y ++ L+ +L A AL + F D + S+
Sbjct: 126 VNVWPDETKHPGFQDFAEQYYWDVFGLSSALLKGYALALGKEENFFARHFKPDDTLASVV 185
Query: 187 MNYYPPC-PQPDKVI---------GFSPHSDADALTILLQLDDTQGLQIRNQGRWVPVKP 236
+ YP P P+ I F H D +T+L Q + Q LQ+ + ++
Sbjct: 186 LIRYPYLDPYPEAAIKTAADGTKLSFEWHEDVSLITVLYQ-SNVQNLQVETAAGYQDIEA 244
Query: 237 LPNAFVINIGDIMEIVSNGIYRSIEHRA-LVNSSKERLSIATFYSSRIDSELGP 289
++IN G M ++N Y++ HR VN+ ER S+ F + DS + P
Sbjct: 245 DDTGYLINCGSYMAHLTNNYYKAPIHRVKWVNA--ERQSLPFFVNLGYDSVIDP 296
>pdb|1IPS|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1IPS|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1QJE|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Ip1 -
Fe Complex)
pdb|1QJF|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Monocyclic Sulfoxide - Fe Complex)
pdb|1QIQ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acmc
Fe Complex)
pdb|1HB4|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB3|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB2|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB1|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Acov Fe Complex)
pdb|1ODM|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-vinylglycine Fe Complex)
pdb|1ODN|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Oxygen-Exposed Product From Anaerobic Ac-Vinylglycine
Fe Complex)
pdb|1OBN|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe-no Complex
pdb|1OC1|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe Complex
pdb|1UZW|A Chain A, Isopenicillin N Synthase With
L-D-(A-Aminoadipoyl)-L-Cysteinyl-D-Isodehydrovaline
pdb|1W03|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Glycine-Fe
Complex
pdb|1W04|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-Cysteinyl-Glycine-Fe-No Complex
pdb|1W05|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
Complex
pdb|1W06|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
No Complex
pdb|2BU9|A Chain A, Isopenicillin N Synthase Complexed With L-Aminoadipoyl-L-
Cysteinyl-L-Hexafluorovaline
pdb|1W3V|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Anaerobic)
pdb|1W3X|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Oxygen Exposed 5
Minutes 20 Bar)
pdb|2IVI|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-methyl-cyclopropylglycine Fe Complex)
pdb|2IVJ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Ac-Cyclopropylglycine Fe Complex)
pdb|1BK0|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acv-Fe
Complex)
pdb|1BLZ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Acv-Fe- No Complex)
pdb|2JB4|A Chain A, Isopenicillin N Synthase With A 2-Thiabicycloheptan-6-One
Product Analogue
pdb|2VAU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
Unexposed)
pdb|2VBB|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
35minutes Oxygen Exposure)
pdb|2VBD|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,l,l-
Acomp (unexposed)
pdb|2VBP|A Chain A, Isopenicillin N Synthase With Substrate Analogue
L,L,L-Acab (Unexposed)
pdb|2VCM|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov
pdb|2VE1|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov (
Oxygen Exposed 1min 20bar)
pdb|2WO7|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,L,D-
Acd2ab (Unexposed)
pdb|2Y6F|A Chain A, Isopenicillin N Synthase With
Ac-D-S-Methyl-3r-Methylcysteine
pdb|2Y60|A Chain A, Isopenicillin N Synthase With Ac-D-Methionine
pdb|2Y86|A Chain A, Isopenicillin N Synthase With Ac-O-Methyl-D-Threonine
pdb|3ZKU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Ahcv
Length = 331
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 68/294 (23%), Positives = 114/294 (38%), Gaps = 63/294 (21%)
Query: 54 SVPLIDLQKLVDDVRADEL---ERLHSSCREWGFFQVINHGVSSSLLEKLKFEIENFFKL 110
+VP ID+ L D +A ++ +++ ++ R+ GFF +NHG++ L + E +
Sbjct: 8 NVPKIDVSPLFGDDQAAKMRVAQQIDAASRDTGFFYAVNHGINVQRLSQKTKEFH--MSI 65
Query: 111 PYEEKKKLWQVADNHEGFGQL---FVVSEEQKLDWETL---------------------- 145
EEK L A N E Q+ + +S K E+
Sbjct: 66 TPEEKWDLAIRAYNKEHQDQVRAGYYLSIPGKKAVESFCYLNPNFTPDHPRIQAKTPTHE 125
Query: 146 -----------------ESYSAEMKKLAMTILGHMAKALRMDGEEMRDLFS--DGVQSMR 186
E Y ++ L+ +L A AL + F D + S+
Sbjct: 126 VNVWPDETKHPGFQDFAEQYYWDVFGLSSALLKGYALALGKEENFFARHFKPDDTLASVV 185
Query: 187 MNYYPPC-PQPDKVI---------GFSPHSDADALTILLQLDDTQGLQIRNQGRWVPVKP 236
+ YP P P+ I F H D +T+L Q + Q LQ+ + ++
Sbjct: 186 LIRYPYLDPYPEAAIKTAADGTKLSFEWHEDVSLITVLYQ-SNVQNLQVETAAGYQDIEA 244
Query: 237 LPNAFVINIGDIMEIVSNGIYRSIEHRA-LVNSSKERLSIATFYSSRIDSELGP 289
++IN G M ++N Y++ HR VN+ ER S+ F + DS + P
Sbjct: 245 DDTGYLINCGSYMAHLTNNYYKAPIHRVKWVNA--ERQSLPFFVNLGYDSVIDP 296
>pdb|1T0B|A Chain A, Structure Of Thua-Like Protein From Bacillus
Stearothermophilus
pdb|1T0B|B Chain B, Structure Of Thua-Like Protein From Bacillus
Stearothermophilus
pdb|1T0B|C Chain C, Structure Of Thua-Like Protein From Bacillus
Stearothermophilus
pdb|1T0B|D Chain D, Structure Of Thua-Like Protein From Bacillus
Stearothermophilus
pdb|1T0B|E Chain E, Structure Of Thua-Like Protein From Bacillus
Stearothermophilus
pdb|1T0B|F Chain F, Structure Of Thua-Like Protein From Bacillus
Stearothermophilus
pdb|1T0B|G Chain G, Structure Of Thua-Like Protein From Bacillus
Stearothermophilus
pdb|1T0B|H Chain H, Structure Of Thua-Like Protein From Bacillus
Stearothermophilus
Length = 252
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Query: 65 DDVRADELERLHSSCREWGFFQVINHGVSSSLLEKLKFEIENFFKLPYEEKKKLWQVADN 124
D+V+ + +ER+H E V++ G S + +KL N +EK++LW VA
Sbjct: 80 DEVKDEVVERVHRRVLEGMGLIVLHSGHFSKIFKKLMGTTCNLKWREADEKERLWVVAPG 139
Query: 125 H---EGFGQLFVVSEEQ 138
H EG G + +E+
Sbjct: 140 HPIVEGIGPYIELEQEE 156
>pdb|2UY2|A Chain A, Sccts1_apo Crystal Structure
pdb|2UY3|A Chain A, Sccts1_8-Chlorotheophylline Crystal Structure
pdb|2UY4|A Chain A, Sccts1_acetazolamide Crystal Structure
pdb|2UY5|A Chain A, Sccts1_kinetin Crystal Structure
Length = 294
Score = 31.6 bits (70), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 5/42 (11%)
Query: 160 LGHMAKALRMDGEEMRDLFSDGVQSMRMNYYPPCPQPDKVIG 201
+G+ A A ++ R LF++G + ++ P CP PD +G
Sbjct: 141 VGYSALATKL-----RTLFAEGTKQYYLSAAPQCPYPDASVG 177
>pdb|2FBT|A Chain A, Wrn Exonuclease
pdb|2FBV|A Chain A, Wrn Exonuclease, Mn Complex
pdb|2FBX|A Chain A, Wrn Exonuclease, Mg Complex
pdb|2FBY|A Chain A, Wrn Exonuclease, Eu Complex
pdb|2FC0|A Chain A, Wrn Exonuclease, Mn Dgmp Complex
Length = 205
Score = 31.6 bits (70), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Query: 79 CRE-WGFFQVINHGVSSSLLEKLKFEIENFFKLPYEEKKKLWQVADNHEGF 128
C E W ++ H + LL+ N+ K P E +KL+ D + GF
Sbjct: 140 CTETWSLNSLVKHLLGKQLLKDKSIRCSNWSKFPLTEDQKLYAATDAYAGF 190
>pdb|3THO|B Chain B, Crystal Structure Of Mre11:rad50 In Its AtpADP BOUND STATE
Length = 379
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 15/90 (16%)
Query: 33 PPRYVRTDQDPPSVTADTWLPSVPLIDLQKLVDDVRADELERLHSSCREW-GFFQVINHG 91
PPRY R D P +PL L D A L+ + SCR + G+ +V+ +
Sbjct: 253 PPRYERIDASP-----------LPLKTLYYKKIDTSA--LKSIRDSCRNFPGYVRVV-YE 298
Query: 92 VSSSLLEKLKFEIENFFKLPYEEKKKLWQV 121
S +L L EI+N K+ + ++++ +V
Sbjct: 299 EDSGILPDLMGEIDNLVKIERKSRREIEEV 328
>pdb|1QB4|A Chain A, Crystal Structure Of Mn(2+)-Bound Phosphoenolpyruvate
Carboxylase
pdb|1JQN|A Chain A, Crystal Structure Of E.Coli Phosphoenolpyruvate
Carboxylase In Complex With Mn2+ And Dcdp
pdb|1FIY|A Chain A, Three-Dimensional Structure Of Phosphoenolpyruvate
Carboxylase From Escherichia Coli At 2.8 A Resolution
Length = 883
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 3/26 (11%)
Query: 60 LQKLVDDVRADELERLHSSCREWGFF 85
LQK+V+D + ELE + CR+W FF
Sbjct: 738 LQKVVEDGKQSELEAM---CRDWPFF 760
>pdb|3THN|A Chain A, Crystal Structure Of Mre11 Core With Manganese
Length = 319
Score = 28.1 bits (61), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 13/78 (16%)
Query: 33 PPRYVRTDQDPPSVTADTWLPSVPLIDLQKLVDDVRADELERLHSSCREWGFFQVINHGV 92
PPRY R D P +PL L D A L+ + SCR + + + +
Sbjct: 253 PPRYERIDASP-----------LPLKTLYYKKIDTSA--LKSIRDSCRNFPGYVRVVYEE 299
Query: 93 SSSLLEKLKFEIENFFKL 110
S +L L EI+N K+
Sbjct: 300 DSGILPDLMGEIDNLVKI 317
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,120,387
Number of Sequences: 62578
Number of extensions: 420379
Number of successful extensions: 1034
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1005
Number of HSP's gapped (non-prelim): 25
length of query: 337
length of database: 14,973,337
effective HSP length: 99
effective length of query: 238
effective length of database: 8,778,115
effective search space: 2089191370
effective search space used: 2089191370
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)