BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019706
(337 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1IS7|A Chain A, Crystal Structure Of Rat GtpchiGFRP STIMULATORY COMPLEX
pdb|1IS7|B Chain B, Crystal Structure Of Rat GtpchiGFRP STIMULATORY COMPLEX
pdb|1IS7|C Chain C, Crystal Structure Of Rat GtpchiGFRP STIMULATORY COMPLEX
pdb|1IS7|D Chain D, Crystal Structure Of Rat GtpchiGFRP STIMULATORY COMPLEX
pdb|1IS7|E Chain E, Crystal Structure Of Rat GtpchiGFRP STIMULATORY COMPLEX
pdb|1IS7|F Chain F, Crystal Structure Of Rat GtpchiGFRP STIMULATORY COMPLEX
pdb|1IS7|G Chain G, Crystal Structure Of Rat GtpchiGFRP STIMULATORY COMPLEX
pdb|1IS7|H Chain H, Crystal Structure Of Rat GtpchiGFRP STIMULATORY COMPLEX
pdb|1IS7|I Chain I, Crystal Structure Of Rat GtpchiGFRP STIMULATORY COMPLEX
pdb|1IS7|J Chain J, Crystal Structure Of Rat GtpchiGFRP STIMULATORY COMPLEX
pdb|1IS8|A Chain A, Crystal Structure Of Rat Gtpchi/gfrp Stimulatory Complex
Plus Zn
pdb|1IS8|B Chain B, Crystal Structure Of Rat Gtpchi/gfrp Stimulatory Complex
Plus Zn
pdb|1IS8|C Chain C, Crystal Structure Of Rat Gtpchi/gfrp Stimulatory Complex
Plus Zn
pdb|1IS8|D Chain D, Crystal Structure Of Rat Gtpchi/gfrp Stimulatory Complex
Plus Zn
pdb|1IS8|E Chain E, Crystal Structure Of Rat Gtpchi/gfrp Stimulatory Complex
Plus Zn
pdb|1IS8|F Chain F, Crystal Structure Of Rat Gtpchi/gfrp Stimulatory Complex
Plus Zn
pdb|1IS8|G Chain G, Crystal Structure Of Rat Gtpchi/gfrp Stimulatory Complex
Plus Zn
pdb|1IS8|H Chain H, Crystal Structure Of Rat Gtpchi/gfrp Stimulatory Complex
Plus Zn
pdb|1IS8|I Chain I, Crystal Structure Of Rat Gtpchi/gfrp Stimulatory Complex
Plus Zn
pdb|1IS8|J Chain J, Crystal Structure Of Rat Gtpchi/gfrp Stimulatory Complex
Plus Zn
pdb|1WPL|A Chain A, Crystal Structure Of The Inhibitory Form Of Rat Gtp
Cyclohydrolase IGFRP COMPLEX
pdb|1WPL|B Chain B, Crystal Structure Of The Inhibitory Form Of Rat Gtp
Cyclohydrolase IGFRP COMPLEX
pdb|1WPL|C Chain C, Crystal Structure Of The Inhibitory Form Of Rat Gtp
Cyclohydrolase IGFRP COMPLEX
pdb|1WPL|D Chain D, Crystal Structure Of The Inhibitory Form Of Rat Gtp
Cyclohydrolase IGFRP COMPLEX
pdb|1WPL|E Chain E, Crystal Structure Of The Inhibitory Form Of Rat Gtp
Cyclohydrolase IGFRP COMPLEX
pdb|1WPL|F Chain F, Crystal Structure Of The Inhibitory Form Of Rat Gtp
Cyclohydrolase IGFRP COMPLEX
pdb|1WPL|G Chain G, Crystal Structure Of The Inhibitory Form Of Rat Gtp
Cyclohydrolase IGFRP COMPLEX
pdb|1WPL|H Chain H, Crystal Structure Of The Inhibitory Form Of Rat Gtp
Cyclohydrolase IGFRP COMPLEX
pdb|1WPL|I Chain I, Crystal Structure Of The Inhibitory Form Of Rat Gtp
Cyclohydrolase IGFRP COMPLEX
pdb|1WPL|J Chain J, Crystal Structure Of The Inhibitory Form Of Rat Gtp
Cyclohydrolase IGFRP COMPLEX
Length = 230
Score = 121 bits (303), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 77/194 (39%), Positives = 104/194 (53%), Gaps = 28/194 (14%)
Query: 143 MVAAVVSILRSLGEDPLREELLGTPRRFVKWLM----NFENSIIDMKLNGFAFGRMDLLK 198
+ AA SILRSLGEDP R+ LL TP R + ++ +I D+ LN F
Sbjct: 51 LAAAYSSILRSLGEDPQRQGLLKTPWRAATAMQFFTKGYQETISDV-LNDAIF------- 102
Query: 199 PNGEVSRSNEHIHSEL----NLSFWSQCEHHLLPFHGVVHIGYFCAEGLNPIGKSLLQSI 254
+ H E+ ++ +S CEHHL+PF G VHIGY + + +G S L I
Sbjct: 103 ---------DEDHDEMVIVKDIDMFSMCEHHLVPFVGRVHIGYLPNKQV--LGLSKLARI 151
Query: 255 VHFYGFKLQVQERLNRQIAETVS-SLLGGDVIVVVEASHTCMIARGIEKFGSSTATIAVL 313
V Y +LQVQERL +QIA ++ +L V VV+EA+H CM+ RG++K S T T +L
Sbjct: 152 VEIYSRRLQVQERLTKQIAVAITEALQPAGVGVVIEATHMCMVMRGVQKMNSKTVTSTML 211
Query: 314 GRFSTDHSARAMFL 327
G F D R FL
Sbjct: 212 GVFREDPKTREEFL 225
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 51/92 (55%), Gaps = 7/92 (7%)
Query: 11 LSKFSRVAEVFSKRLQNPQRLADEVCSALQHGIKPAGVAVILQCSHLHFPNLESAFLDPN 70
LSK +R+ E++S+RLQ +RL ++ A+ ++PAGV V+++ +H+ +
Sbjct: 145 LSKLARIVEIYSRRLQVQERLTKQIAVAITEALQPAGVGVVIEATHM------CMVMRGV 198
Query: 71 HQGWVKALVSSGAGVFENENADIWSDLLSLLR 102
+ K + S+ GVF E+ + L+L+R
Sbjct: 199 QKMNSKTVTSTMLGVF-REDPKTREEFLTLIR 229
>pdb|1FB1|A Chain A, Crystal Structure Of Human Gtp Cyclohydrolase I
pdb|1FB1|B Chain B, Crystal Structure Of Human Gtp Cyclohydrolase I
pdb|1FB1|C Chain C, Crystal Structure Of Human Gtp Cyclohydrolase I
pdb|1FB1|D Chain D, Crystal Structure Of Human Gtp Cyclohydrolase I
pdb|1FB1|E Chain E, Crystal Structure Of Human Gtp Cyclohydrolase I
Length = 196
Score = 115 bits (289), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 76/194 (39%), Positives = 103/194 (53%), Gaps = 28/194 (14%)
Query: 143 MVAAVVSILRSLGEDPLREELLGTPRRFVKWLM----NFENSIIDMKLNGFAFGRMDLLK 198
+ AA SIL SLGE+P R+ LL TP R + ++ +I D+ LN F
Sbjct: 17 LAAAYSSILSSLGENPQRQGLLKTPWRAASAMQFFTKGYQETISDV-LNDAIF------- 68
Query: 199 PNGEVSRSNEHIHSEL----NLSFWSQCEHHLLPFHGVVHIGYFCAEGLNPIGKSLLQSI 254
+ H E+ ++ +S CEHHL+PF G VHIGY + + +G S L I
Sbjct: 69 ---------DEDHDEMVIVKDIDMFSMCEHHLVPFVGKVHIGYLPNKQV--LGLSKLARI 117
Query: 255 VHFYGFKLQVQERLNRQIAETVS-SLLGGDVIVVVEASHTCMIARGIEKFGSSTATIAVL 313
V Y +LQVQERL +QIA ++ +L V VVVEA+H CM+ RG++K S T T +L
Sbjct: 118 VEIYSRRLQVQERLTKQIAVAITEALRPAGVGVVVEATHMCMVMRGVQKMNSKTVTSTML 177
Query: 314 GRFSTDHSARAMFL 327
G F D R FL
Sbjct: 178 GVFREDPKTREEFL 191
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 51/92 (55%), Gaps = 7/92 (7%)
Query: 11 LSKFSRVAEVFSKRLQNPQRLADEVCSALQHGIKPAGVAVILQCSHLHFPNLESAFLDPN 70
LSK +R+ E++S+RLQ +RL ++ A+ ++PAGV V+++ +H+ +
Sbjct: 111 LSKLARIVEIYSRRLQVQERLTKQIAVAITEALRPAGVGVVVEATHM------CMVMRGV 164
Query: 71 HQGWVKALVSSGAGVFENENADIWSDLLSLLR 102
+ K + S+ GVF E+ + L+L+R
Sbjct: 165 QKMNSKTVTSTMLGVF-REDPKTREEFLTLIR 195
>pdb|1WM9|A Chain A, Structure Of Gtp Cyclohydrolase I From Thermus
Thermophilus Hb8
pdb|1WM9|B Chain B, Structure Of Gtp Cyclohydrolase I From Thermus
Thermophilus Hb8
pdb|1WM9|C Chain C, Structure Of Gtp Cyclohydrolase I From Thermus
Thermophilus Hb8
pdb|1WM9|D Chain D, Structure Of Gtp Cyclohydrolase I From Thermus
Thermophilus Hb8
pdb|1WM9|E Chain E, Structure Of Gtp Cyclohydrolase I From Thermus
Thermophilus Hb8
pdb|1WUQ|A Chain A, Structure Of Gtp Cyclohydrolase I Complexed With 8-Oxo-Gtp
pdb|1WUQ|B Chain B, Structure Of Gtp Cyclohydrolase I Complexed With 8-Oxo-Gtp
pdb|1WUQ|C Chain C, Structure Of Gtp Cyclohydrolase I Complexed With 8-Oxo-Gtp
pdb|1WUQ|D Chain D, Structure Of Gtp Cyclohydrolase I Complexed With 8-Oxo-Gtp
pdb|1WUQ|E Chain E, Structure Of Gtp Cyclohydrolase I Complexed With 8-Oxo-Gtp
pdb|1WUR|A Chain A, Structure Of Gtp Cyclohydrolase I Complexed With
8-Oxo-Dgtp
pdb|1WUR|B Chain B, Structure Of Gtp Cyclohydrolase I Complexed With
8-Oxo-Dgtp
pdb|1WUR|C Chain C, Structure Of Gtp Cyclohydrolase I Complexed With
8-Oxo-Dgtp
pdb|1WUR|D Chain D, Structure Of Gtp Cyclohydrolase I Complexed With
8-Oxo-Dgtp
pdb|1WUR|E Chain E, Structure Of Gtp Cyclohydrolase I Complexed With
8-Oxo-Dgtp
Length = 220
Score = 95.5 bits (236), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 69/188 (36%), Positives = 94/188 (50%), Gaps = 18/188 (9%)
Query: 151 LRSLGEDPLREELLGTPRRFVK---WLMNFENSIIDMKLNGFAFGRMDLLKPNGEVSRSN 207
L+ +GEDP RE LL TP R K +L ++ + G F + +
Sbjct: 46 LQVIGEDPGREGLLKTPERVAKAWAFLTRGYRQRLEEVVGGAVF-----------PAEGS 94
Query: 208 EHIHSELNLSFWSQCEHHLLPFHGVVHIGYFCAEGLNPIGKSLLQSIVHFYGFKLQVQER 267
E + + + F+S CEHHLLPF G VHIGY + +G S IV + +LQVQER
Sbjct: 95 EMVVVK-GVEFYSMCEHHLLPFFGKVHIGYIPDGKI--LGLSKFARIVDMFARRLQVQER 151
Query: 268 LNRQIAETVSSLLGGDVIVVVEAS-HTCMIARGIEKFGSSTATIAVLGRFSTDHSARAMF 326
L QIAE + +L + VV H CM+ RG+EK S T T A+LG F + R F
Sbjct: 152 LAVQIAEAIQEVLEPQGVGVVVEGVHLCMMMRGVEKQHSRTVTSAMLGVFRENQKTREEF 211
Query: 327 LQNIPKTT 334
L ++ T
Sbjct: 212 LSHLRDGT 219
Score = 41.2 bits (95), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 53/92 (57%), Gaps = 7/92 (7%)
Query: 11 LSKFSRVAEVFSKRLQNPQRLADEVCSALQHGIKPAGVAVILQCSHLHFPNLESAFLDPN 70
LSKF+R+ ++F++RLQ +RLA ++ A+Q ++P GV V+++ HL + ++
Sbjct: 132 LSKFARIVDMFARRLQVQERLAVQIAEAIQEVLEPQGVGVVVEGVHL---CMMMRGVEKQ 188
Query: 71 HQGWVKALVSSGAGVFENENADIWSDLLSLLR 102
H + + S+ GVF EN + LS LR
Sbjct: 189 HS---RTVTSAMLGVF-RENQKTREEFLSHLR 216
>pdb|4DU6|A Chain A, Crystal Structure Of Gtp Cyclohydrolase I From Yersinia
Pestis Complexed With Gtp
pdb|4DU6|B Chain B, Crystal Structure Of Gtp Cyclohydrolase I From Yersinia
Pestis Complexed With Gtp
pdb|4DU6|C Chain C, Crystal Structure Of Gtp Cyclohydrolase I From Yersinia
Pestis Complexed With Gtp
pdb|4DU6|D Chain D, Crystal Structure Of Gtp Cyclohydrolase I From Yersinia
Pestis Complexed With Gtp
pdb|4DU6|E Chain E, Crystal Structure Of Gtp Cyclohydrolase I From Yersinia
Pestis Complexed With Gtp
Length = 223
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 95/187 (50%), Gaps = 11/187 (5%)
Query: 145 AAVVSILRSLGEDPLREELLGTPRRFVKWLMNFENSIIDMKLNGFAFGRMDLLKPNGEVS 204
A + ++ L D + L TPRR K ++ S +D + F ++ L++ +V
Sbjct: 43 AHMTEVMHLLNLDLTDDSLADTPRRIAKMYVDEIFSGLDYE----NFPKITLIQNKMKV- 97
Query: 205 RSNEHIHSELNLSFWSQCEHHLLPFHGVVHIGYFCAEGLNPIGKSLLQSIVHFYGFKLQV 264
+ + + +++ S CEHH + G + Y + + IG S + IV F+ + QV
Sbjct: 98 ---DEMVTVRDITLTSTCEHHFVTIDGKATVAYIPKDSV--IGLSKINRIVQFFAQRPQV 152
Query: 265 QERLNRQIAETVSSLLG-GDVIVVVEASHTCMIARGIEKFGSSTATIAVLGRFSTDHSAR 323
QERL +QI + +LLG +V V ++A H C+ ARGI S+T T ++ G F + + R
Sbjct: 153 QERLTQQILLALQTLLGTNNVAVSIDAVHYCVKARGIRDATSATTTTSLGGLFKSSQNTR 212
Query: 324 AMFLQNI 330
FL+ +
Sbjct: 213 QEFLRAV 219
Score = 31.6 bits (70), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 26/46 (56%)
Query: 11 LSKFSRVAEVFSKRLQNPQRLADEVCSALQHGIKPAGVAVILQCSH 56
LSK +R+ + F++R Q +RL ++ ALQ + VAV + H
Sbjct: 136 LSKINRIVQFFAQRPQVQERLTQQILLALQTLLGTNNVAVSIDAVH 181
>pdb|1GTP|A Chain A, Gtp Cyclohydrolase I
pdb|1GTP|B Chain B, Gtp Cyclohydrolase I
pdb|1GTP|C Chain C, Gtp Cyclohydrolase I
pdb|1GTP|D Chain D, Gtp Cyclohydrolase I
pdb|1GTP|E Chain E, Gtp Cyclohydrolase I
pdb|1GTP|F Chain F, Gtp Cyclohydrolase I
pdb|1GTP|G Chain G, Gtp Cyclohydrolase I
pdb|1GTP|H Chain H, Gtp Cyclohydrolase I
pdb|1GTP|I Chain I, Gtp Cyclohydrolase I
pdb|1GTP|J Chain J, Gtp Cyclohydrolase I
pdb|1GTP|K Chain K, Gtp Cyclohydrolase I
pdb|1GTP|L Chain L, Gtp Cyclohydrolase I
pdb|1GTP|M Chain M, Gtp Cyclohydrolase I
pdb|1GTP|N Chain N, Gtp Cyclohydrolase I
pdb|1GTP|O Chain O, Gtp Cyclohydrolase I
pdb|1GTP|P Chain P, Gtp Cyclohydrolase I
pdb|1GTP|Q Chain Q, Gtp Cyclohydrolase I
pdb|1GTP|R Chain R, Gtp Cyclohydrolase I
pdb|1GTP|S Chain S, Gtp Cyclohydrolase I
pdb|1GTP|T Chain T, Gtp Cyclohydrolase I
pdb|1FBX|A Chain A, Crystal Structure Of Zinc-Containing E.Coli Gtp
Cyclohydrolase I
pdb|1FBX|B Chain B, Crystal Structure Of Zinc-Containing E.Coli Gtp
Cyclohydrolase I
pdb|1FBX|C Chain C, Crystal Structure Of Zinc-Containing E.Coli Gtp
Cyclohydrolase I
pdb|1FBX|D Chain D, Crystal Structure Of Zinc-Containing E.Coli Gtp
Cyclohydrolase I
pdb|1FBX|E Chain E, Crystal Structure Of Zinc-Containing E.Coli Gtp
Cyclohydrolase I
pdb|1FBX|F Chain F, Crystal Structure Of Zinc-Containing E.Coli Gtp
Cyclohydrolase I
pdb|1FBX|G Chain G, Crystal Structure Of Zinc-Containing E.Coli Gtp
Cyclohydrolase I
pdb|1FBX|H Chain H, Crystal Structure Of Zinc-Containing E.Coli Gtp
Cyclohydrolase I
pdb|1FBX|I Chain I, Crystal Structure Of Zinc-Containing E.Coli Gtp
Cyclohydrolase I
pdb|1FBX|J Chain J, Crystal Structure Of Zinc-Containing E.Coli Gtp
Cyclohydrolase I
pdb|1FBX|K Chain K, Crystal Structure Of Zinc-Containing E.Coli Gtp
Cyclohydrolase I
pdb|1FBX|L Chain L, Crystal Structure Of Zinc-Containing E.Coli Gtp
Cyclohydrolase I
pdb|1FBX|M Chain M, Crystal Structure Of Zinc-Containing E.Coli Gtp
Cyclohydrolase I
pdb|1FBX|N Chain N, Crystal Structure Of Zinc-Containing E.Coli Gtp
Cyclohydrolase I
pdb|1FBX|O Chain O, Crystal Structure Of Zinc-Containing E.Coli Gtp
Cyclohydrolase I
Length = 221
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 94/185 (50%), Gaps = 11/185 (5%)
Query: 147 VVSILRSLGEDPLREELLGTPRRFVKWLMNFENSIIDMKLNGFAFGRMDLLKPNGEVSRS 206
+ I++ L D + L+ TP R K ++ S +D F ++ L++ +V
Sbjct: 43 MTEIMQLLNLDLADDSLMETPHRIAKMYVDEIFSGLDYA----NFPKITLIENKMKV--- 95
Query: 207 NEHIHSELNLSFWSQCEHHLLPFHGVVHIGYFCAEGLNPIGKSLLQSIVHFYGFKLQVQE 266
+ + + +++ S CEHH + G + Y + + IG S + IV F+ + QVQE
Sbjct: 96 -DEMVTVRDITLTSTCEHHFVTIDGKATVAYIPKDSV--IGLSKINRIVQFFAQRPQVQE 152
Query: 267 RLNRQIAETVSSLLG-GDVIVVVEASHTCMIARGIEKFGSSTATIAVLGRFSTDHSARAM 325
RL +QI + +LLG +V V ++A H C+ ARGI S+T T ++ G F + + R
Sbjct: 153 RLTQQILIALQTLLGTNNVAVSIDAVHYCVKARGIRDATSATTTTSLGGLFKSSQNTRHE 212
Query: 326 FLQNI 330
FL+ +
Sbjct: 213 FLRAV 217
Score = 31.6 bits (70), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 26/46 (56%)
Query: 11 LSKFSRVAEVFSKRLQNPQRLADEVCSALQHGIKPAGVAVILQCSH 56
LSK +R+ + F++R Q +RL ++ ALQ + VAV + H
Sbjct: 134 LSKINRIVQFFAQRPQVQERLTQQILIALQTLLGTNNVAVSIDAVH 179
>pdb|1N3S|A Chain A, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3S|B Chain B, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3S|C Chain C, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3S|D Chain D, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3S|E Chain E, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3S|F Chain F, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3S|G Chain G, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3S|H Chain H, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3S|I Chain I, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3S|J Chain J, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
Length = 221
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 93/185 (50%), Gaps = 11/185 (5%)
Query: 147 VVSILRSLGEDPLREELLGTPRRFVKWLMNFENSIIDMKLNGFAFGRMDLLKPNGEVSRS 206
+ I++ L D + L+ TP R K ++ S +D F ++ L++ +V
Sbjct: 43 MTEIMQLLNLDLADDSLMETPHRIAKMYVDEIFSGLDYA----NFPKITLIENKMKV--- 95
Query: 207 NEHIHSELNLSFWSQCEHHLLPFHGVVHIGYFCAEGLNPIGKSLLQSIVHFYGFKLQVQE 266
+ + + +++ S CEH + G + Y + + IG S + IV F+ + QVQE
Sbjct: 96 -DEMVTVRDITLTSTCEHSFVTIDGKATVAYIPKDSV--IGLSKINRIVQFFAQRPQVQE 152
Query: 267 RLNRQIAETVSSLLG-GDVIVVVEASHTCMIARGIEKFGSSTATIAVLGRFSTDHSARAM 325
RL +QI + +LLG +V V ++A H C+ ARGI S+T T ++ G F + + R
Sbjct: 153 RLTQQILIALQTLLGTNNVAVSIDAVHYCVKARGIRDATSATTTTSLGGLFKSSQNTRHE 212
Query: 326 FLQNI 330
FL+ +
Sbjct: 213 FLRAV 217
Score = 31.6 bits (70), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 26/46 (56%)
Query: 11 LSKFSRVAEVFSKRLQNPQRLADEVCSALQHGIKPAGVAVILQCSH 56
LSK +R+ + F++R Q +RL ++ ALQ + VAV + H
Sbjct: 134 LSKINRIVQFFAQRPQVQERLTQQILIALQTLLGTNNVAVSIDAVH 179
>pdb|1A8R|A Chain A, Gtp Cyclohydrolase I (H112s Mutant) In Complex With Gtp
pdb|1A8R|B Chain B, Gtp Cyclohydrolase I (H112s Mutant) In Complex With Gtp
pdb|1A8R|C Chain C, Gtp Cyclohydrolase I (H112s Mutant) In Complex With Gtp
pdb|1A8R|D Chain D, Gtp Cyclohydrolase I (H112s Mutant) In Complex With Gtp
pdb|1A8R|E Chain E, Gtp Cyclohydrolase I (H112s Mutant) In Complex With Gtp
pdb|1A8R|F Chain F, Gtp Cyclohydrolase I (H112s Mutant) In Complex With Gtp
pdb|1A8R|G Chain G, Gtp Cyclohydrolase I (H112s Mutant) In Complex With Gtp
pdb|1A8R|H Chain H, Gtp Cyclohydrolase I (H112s Mutant) In Complex With Gtp
pdb|1A8R|I Chain I, Gtp Cyclohydrolase I (H112s Mutant) In Complex With Gtp
pdb|1A8R|J Chain J, Gtp Cyclohydrolase I (H112s Mutant) In Complex With Gtp
pdb|1A8R|K Chain K, Gtp Cyclohydrolase I (H112s Mutant) In Complex With Gtp
pdb|1A8R|L Chain L, Gtp Cyclohydrolase I (H112s Mutant) In Complex With Gtp
pdb|1A8R|M Chain M, Gtp Cyclohydrolase I (H112s Mutant) In Complex With Gtp
pdb|1A8R|N Chain N, Gtp Cyclohydrolase I (H112s Mutant) In Complex With Gtp
pdb|1A8R|O Chain O, Gtp Cyclohydrolase I (H112s Mutant) In Complex With Gtp
pdb|1N3R|A Chain A, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3R|B Chain B, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3R|C Chain C, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3R|D Chain D, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3R|E Chain E, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3R|F Chain F, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3R|G Chain G, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3R|H Chain H, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3R|I Chain I, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3R|J Chain J, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3R|K Chain K, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3R|L Chain L, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3R|M Chain M, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3R|N Chain N, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3R|O Chain O, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
Length = 221
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 93/185 (50%), Gaps = 11/185 (5%)
Query: 147 VVSILRSLGEDPLREELLGTPRRFVKWLMNFENSIIDMKLNGFAFGRMDLLKPNGEVSRS 206
+ I++ L D + L+ TP R K ++ S +D F ++ L++ +V
Sbjct: 43 MTEIMQLLNLDLADDSLMETPHRIAKMYVDEIFSGLDYA----NFPKITLIENKMKV--- 95
Query: 207 NEHIHSELNLSFWSQCEHHLLPFHGVVHIGYFCAEGLNPIGKSLLQSIVHFYGFKLQVQE 266
+ + + +++ S CE H + G + Y + + IG S + IV F+ + QVQE
Sbjct: 96 -DEMVTVRDITLTSTCESHFVTIDGKATVAYIPKDSV--IGLSKINRIVQFFAQRPQVQE 152
Query: 267 RLNRQIAETVSSLLG-GDVIVVVEASHTCMIARGIEKFGSSTATIAVLGRFSTDHSARAM 325
RL +QI + +LLG +V V ++A H C+ ARGI S+T T ++ G F + + R
Sbjct: 153 RLTQQILIALQTLLGTNNVAVSIDAVHYCVKARGIRDATSATTTTSLGGLFKSSQNTRHE 212
Query: 326 FLQNI 330
FL+ +
Sbjct: 213 FLRAV 217
Score = 31.6 bits (70), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 26/46 (56%)
Query: 11 LSKFSRVAEVFSKRLQNPQRLADEVCSALQHGIKPAGVAVILQCSH 56
LSK +R+ + F++R Q +RL ++ ALQ + VAV + H
Sbjct: 134 LSKINRIVQFFAQRPQVQERLTQQILIALQTLLGTNNVAVSIDAVH 179
>pdb|1N3T|F Chain F, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3T|G Chain G, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3T|H Chain H, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3T|I Chain I, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3T|J Chain J, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3T|K Chain K, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3T|L Chain L, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3T|M Chain M, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3T|N Chain N, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3T|O Chain O, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3T|A Chain A, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3T|B Chain B, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3T|C Chain C, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3T|D Chain D, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3T|E Chain E, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
Length = 221
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 93/185 (50%), Gaps = 11/185 (5%)
Query: 147 VVSILRSLGEDPLREELLGTPRRFVKWLMNFENSIIDMKLNGFAFGRMDLLKPNGEVSRS 206
+ I++ L D + L+ TP R K ++ S +D F ++ L++ +V
Sbjct: 43 MTEIMQLLNLDLADDSLMETPHRIAKMYVDEIFSGLDYA----NFPKITLIENKMKV--- 95
Query: 207 NEHIHSELNLSFWSQCEHHLLPFHGVVHIGYFCAEGLNPIGKSLLQSIVHFYGFKLQVQE 266
+ + + +++ S CEHH + G + Y + + IG S + IV F+ + QVQE
Sbjct: 96 -DEMVTVRDITLTSTCEHHFVTIDGKATVAYIPKDSV--IGLSKINRIVQFFAQRPQVQE 152
Query: 267 RLNRQIAETVSSLLG-GDVIVVVEASHTCMIARGIEKFGSSTATIAVLGRFSTDHSARAM 325
RL +QI + +LLG +V V ++A H + ARGI S+T T ++ G F + + R
Sbjct: 153 RLTQQILIALQTLLGTNNVAVSIDAVHYSVKARGIRDATSATTTTSLGGLFKSSQNTRHE 212
Query: 326 FLQNI 330
FL+ +
Sbjct: 213 FLRAV 217
Score = 32.0 bits (71), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 26/46 (56%)
Query: 11 LSKFSRVAEVFSKRLQNPQRLADEVCSALQHGIKPAGVAVILQCSH 56
LSK +R+ + F++R Q +RL ++ ALQ + VAV + H
Sbjct: 134 LSKINRIVQFFAQRPQVQERLTQQILIALQTLLGTNNVAVSIDAVH 179
>pdb|1A9C|A Chain A, Gtp Cyclohydrolase I (C110s Mutant) In Complex With Gtp
pdb|1A9C|B Chain B, Gtp Cyclohydrolase I (C110s Mutant) In Complex With Gtp
pdb|1A9C|C Chain C, Gtp Cyclohydrolase I (C110s Mutant) In Complex With Gtp
pdb|1A9C|D Chain D, Gtp Cyclohydrolase I (C110s Mutant) In Complex With Gtp
pdb|1A9C|E Chain E, Gtp Cyclohydrolase I (C110s Mutant) In Complex With Gtp
pdb|1A9C|F Chain F, Gtp Cyclohydrolase I (C110s Mutant) In Complex With Gtp
pdb|1A9C|G Chain G, Gtp Cyclohydrolase I (C110s Mutant) In Complex With Gtp
pdb|1A9C|H Chain H, Gtp Cyclohydrolase I (C110s Mutant) In Complex With Gtp
pdb|1A9C|I Chain I, Gtp Cyclohydrolase I (C110s Mutant) In Complex With Gtp
pdb|1A9C|J Chain J, Gtp Cyclohydrolase I (C110s Mutant) In Complex With Gtp
pdb|1A9C|K Chain K, Gtp Cyclohydrolase I (C110s Mutant) In Complex With Gtp
pdb|1A9C|L Chain L, Gtp Cyclohydrolase I (C110s Mutant) In Complex With Gtp
pdb|1A9C|M Chain M, Gtp Cyclohydrolase I (C110s Mutant) In Complex With Gtp
pdb|1A9C|N Chain N, Gtp Cyclohydrolase I (C110s Mutant) In Complex With Gtp
pdb|1A9C|O Chain O, Gtp Cyclohydrolase I (C110s Mutant) In Complex With Gtp
Length = 221
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 93/185 (50%), Gaps = 11/185 (5%)
Query: 147 VVSILRSLGEDPLREELLGTPRRFVKWLMNFENSIIDMKLNGFAFGRMDLLKPNGEVSRS 206
+ I++ L D + L+ TP R K ++ S +D F ++ L++ +V
Sbjct: 43 MTEIMQLLNLDLADDSLMETPHRIAKMYVDEIFSGLDYA----NFPKITLIENKMKV--- 95
Query: 207 NEHIHSELNLSFWSQCEHHLLPFHGVVHIGYFCAEGLNPIGKSLLQSIVHFYGFKLQVQE 266
+ + + +++ S EHH + G + Y + + IG S + IV F+ + QVQE
Sbjct: 96 -DEMVTVRDITLTSTSEHHFVTIDGKATVAYIPKDSV--IGLSKINRIVQFFAQRPQVQE 152
Query: 267 RLNRQIAETVSSLLG-GDVIVVVEASHTCMIARGIEKFGSSTATIAVLGRFSTDHSARAM 325
RL +QI + +LLG +V V ++A H C+ ARGI S+T T ++ G F + + R
Sbjct: 153 RLTQQILIALQTLLGTNNVAVSIDAVHYCVKARGIRDATSATTTTSLGGLFKSSQNTRHE 212
Query: 326 FLQNI 330
FL+ +
Sbjct: 213 FLRAV 217
Score = 32.0 bits (71), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 26/46 (56%)
Query: 11 LSKFSRVAEVFSKRLQNPQRLADEVCSALQHGIKPAGVAVILQCSH 56
LSK +R+ + F++R Q +RL ++ ALQ + VAV + H
Sbjct: 134 LSKINRIVQFFAQRPQVQERLTQQILIALQTLLGTNNVAVSIDAVH 179
>pdb|3KHD|A Chain A, Crystal Structure Of Pff1300w.
pdb|3KHD|B Chain B, Crystal Structure Of Pff1300w.
pdb|3KHD|C Chain C, Crystal Structure Of Pff1300w.
pdb|3KHD|D Chain D, Crystal Structure Of Pff1300w
Length = 520
Score = 35.4 bits (80), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 40/92 (43%), Gaps = 4/92 (4%)
Query: 228 PFHGVVHIGYFCAEGLNPIGKSLL-QSIVHFYGFKLQVQERLNRQIAETVSSLLGGDVIV 286
P V + C E I LL QS+V+ + VQE + R ET S+ +I
Sbjct: 365 PVEAVTIMSKICLEAEACIDYKLLYQSLVNAIETPISVQEAVARSAVETAESIQASLIIA 424
Query: 287 VVEASHTCMIARGIEKFGSSTATIAVLGRFST 318
+ E +T AR I K+ S +A+ ST
Sbjct: 425 LTETGYT---ARLIAKYKPSCTILALSASDST 453
>pdb|3TOI|A Chain A, Tailoring Enzyme Stability And Exploiting Stability-Trait
Linkage By Iterative Truncation And Optimization
pdb|3TOI|B Chain B, Tailoring Enzyme Stability And Exploiting Stability-Trait
Linkage By Iterative Truncation And Optimization
Length = 254
Score = 31.6 bits (70), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 243 LNPIGKSLLQSIVHFYGFKLQVQERLNRQIAETVSSLLGG 282
L P GK +++ G + + ER NRQIAE +SL+GG
Sbjct: 211 LGPDGKPSRIVVIYMTGSQATMDER-NRQIAEIGASLIGG 249
>pdb|4FQK|B Chain B, Influenza BBRISBANE602008 HEMAGGLUTININ FAB CR8059 COMPLEX
pdb|4FQK|D Chain D, Influenza BBRISBANE602008 HEMAGGLUTININ FAB CR8059 COMPLEX
pdb|4FQM|B Chain B, Structure Of BBRISBANE602008 INFLUENZA HEMAGGLUTININ
pdb|4FQM|D Chain D, Structure Of BBRISBANE602008 INFLUENZA HEMAGGLUTININ
pdb|4FQM|F Chain F, Structure Of BBRISBANE602008 INFLUENZA HEMAGGLUTININ
pdb|4FQM|H Chain H, Structure Of BBRISBANE602008 INFLUENZA HEMAGGLUTININ
pdb|4FQM|J Chain J, Structure Of BBRISBANE602008 INFLUENZA HEMAGGLUTININ
pdb|4FQM|L Chain L, Structure Of BBRISBANE602008 INFLUENZA HEMAGGLUTININ
Length = 179
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 6/81 (7%)
Query: 262 LQVQERLNRQIAETVSS------LLGGDVIVVVEASHTCMIARGIEKFGSSTATIAVLGR 315
L++ E+++ A+T+SS LL + I+ E H + R ++K +A G
Sbjct: 78 LELDEKVDDLRADTISSQIELAVLLSNEGIINSEDEHLLALERKLKKMLGPSAVEIGNGC 137
Query: 316 FSTDHSARAMFLQNIPKTTFD 336
F T H L I TFD
Sbjct: 138 FETKHKCNQTCLDRIAAGTFD 158
>pdb|1EA0|A Chain A, Alpha Subunit Of A. Brasilense Glutamate Synthase
pdb|1EA0|B Chain B, Alpha Subunit Of A. Brasilense Glutamate Synthase
Length = 1479
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 12/69 (17%)
Query: 156 EDPLREELLGTPRRFVKWLMNFENSIIDMKLNGFAF-------GRMDLLKPNGEVSRSNE 208
+D LR++ +GTP + V L F + L G F GR DLL +VSR E
Sbjct: 1121 DDKLRQKFVGTPEKVVN-LFTFLAEEVREILAGLGFRSLNEVIGRTDLLH---QVSRGAE 1176
Query: 209 HIHSELNLS 217
H+ +L+L+
Sbjct: 1177 HL-DDLDLN 1184
>pdb|2VDC|A Chain A, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization Behavior
In Solution: Functional Implications.
pdb|2VDC|B Chain B, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization Behavior
In Solution: Functional Implications.
pdb|2VDC|C Chain C, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization Behavior
In Solution: Functional Implications.
pdb|2VDC|D Chain D, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization Behavior
In Solution: Functional Implications.
pdb|2VDC|E Chain E, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization Behavior
In Solution: Functional Implications.
pdb|2VDC|F Chain F, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization Behavior
In Solution: Functional Implications
Length = 1472
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 12/69 (17%)
Query: 156 EDPLREELLGTPRRFVKWLMNFENSIIDMKLNGFAF-------GRMDLLKPNGEVSRSNE 208
+D LR++ +GTP + V L F + L G F GR DLL +VSR E
Sbjct: 1121 DDKLRQKFVGTPEKVVN-LFTFLAEEVREILAGLGFRSLNEVIGRTDLLH---QVSRGAE 1176
Query: 209 HIHSELNLS 217
H+ +L+L+
Sbjct: 1177 HL-DDLDLN 1184
>pdb|3BT6|B Chain B, Crystal Structure Of Influenza B Virus Hemagglutinin
Length = 169
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 6/81 (7%)
Query: 262 LQVQERLNRQIAETVSS------LLGGDVIVVVEASHTCMIARGIEKFGSSTATIAVLGR 315
L++ E+++ A+T+SS LL + I+ E H + R ++K +A G
Sbjct: 78 LELDEKVDDLRADTISSQIELAVLLSNEGIINSEDEHLLALERKLKKMLGPSAVDIGNGC 137
Query: 316 FSTDHSARAMFLQNIPKTTFD 336
F T H L I TF+
Sbjct: 138 FETKHKCNQTCLDRIAAGTFN 158
>pdb|2RFT|B Chain B, Crystal Structure Of Influenza B Virus Hemagglutinin In
Complex With Lsta Receptor Analog
pdb|2RFU|B Chain B, Crystal Structure Of Influenza B Virus Hemagglutinin In
Complex With Lstc Receptor Analog
Length = 176
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 6/81 (7%)
Query: 262 LQVQERLNRQIAETVSS------LLGGDVIVVVEASHTCMIARGIEKFGSSTATIAVLGR 315
L++ E+++ A+T+SS LL + I+ E H + R ++K +A G
Sbjct: 78 LELDEKVDDLRADTISSQIELAVLLSNEGIINSEDEHLLALERKLKKMLGPSAVDIGNGC 137
Query: 316 FSTDHSARAMFLQNIPKTTFD 336
F T H L I TF+
Sbjct: 138 FETKHKCNQTCLDRIAAGTFN 158
>pdb|4AS5|A Chain A, Structure Of Mouse Inositol Monophosphatase 1
pdb|4AS5|B Chain B, Structure Of Mouse Inositol Monophosphatase 1
pdb|4AS5|C Chain C, Structure Of Mouse Inositol Monophosphatase 1
pdb|4AS5|D Chain D, Structure Of Mouse Inositol Monophosphatase 1
Length = 277
Score = 27.7 bits (60), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 41/97 (42%), Gaps = 10/97 (10%)
Query: 5 VNEFWDLSKFSRVAEVFSKRLQNPQRLA----DEVCSALQHGIKPAGVAVILQCSHLHFP 60
V++ D++K V E+ S R R+ +++CS HGI+ G A + C L
Sbjct: 148 VSQQEDITKSLLVTELGSSRKPETLRIVLSNMEKLCSIPIHGIRSVGTAAVNMC--LVAT 205
Query: 61 NLESAFLDPNHQGWVKALVSSGAGVFENENADIWSDL 97
A+ + W A GAG+ E + D+
Sbjct: 206 GGADAYYEMGIHCWDMA----GAGIIVTEAGGVLMDV 238
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.137 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,614,868
Number of Sequences: 62578
Number of extensions: 374382
Number of successful extensions: 809
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 772
Number of HSP's gapped (non-prelim): 28
length of query: 337
length of database: 14,973,337
effective HSP length: 99
effective length of query: 238
effective length of database: 8,778,115
effective search space: 2089191370
effective search space used: 2089191370
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.6 bits)