Query 019706
Match_columns 337
No_of_seqs 226 out of 2196
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 03:53:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019706.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019706hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02531 GTP cyclohydrolase I 100.0 5E-103 1E-107 785.0 33.6 316 5-336 135-467 (469)
2 COG0302 FolE GTP cyclohydrolas 100.0 2.5E-76 5.4E-81 529.8 18.0 184 138-332 10-194 (195)
3 TIGR00063 folE GTP cyclohydrol 100.0 9.9E-74 2.1E-78 514.4 19.1 178 143-331 1-179 (180)
4 PLN03044 GTP cyclohydrolase I; 100.0 1.1E-73 2.3E-78 516.9 18.4 180 143-332 1-186 (188)
5 PRK12606 GTP cyclohydrolase I; 100.0 2.8E-73 6.1E-78 518.6 21.2 182 139-332 18-200 (201)
6 PRK09347 folE GTP cyclohydrola 100.0 3.8E-73 8.3E-78 513.6 18.9 183 139-331 4-187 (188)
7 cd00642 GTP_cyclohydro1 GTP cy 100.0 1E-72 2.2E-77 509.7 19.8 180 140-331 3-184 (185)
8 PF01227 GTP_cyclohydroI: GTP 100.0 3.5E-73 7.5E-78 510.3 15.0 177 143-331 1-179 (179)
9 PTZ00484 GTP cyclohydrolase I; 100.0 6.8E-70 1.5E-74 511.7 19.3 182 139-331 72-258 (259)
10 KOG2698 GTP cyclohydrolase I [ 100.0 7E-69 1.5E-73 485.4 14.4 225 76-332 21-246 (247)
11 PLN02531 GTP cyclohydrolase I 100.0 1.7E-64 3.6E-69 507.0 19.5 193 135-336 27-238 (469)
12 COG0302 FolE GTP cyclohydrolas 100.0 7.1E-36 1.5E-40 268.7 10.7 93 4-103 102-194 (195)
13 PLN03044 GTP cyclohydrolase I; 100.0 1.8E-34 3.8E-39 261.4 10.6 93 4-103 93-186 (188)
14 TIGR00063 folE GTP cyclohydrol 100.0 2.1E-34 4.5E-39 259.6 10.6 92 4-102 88-179 (180)
15 cd00642 GTP_cyclohydro1 GTP cy 100.0 7.8E-34 1.7E-38 256.8 11.1 92 4-102 93-184 (185)
16 PRK12606 GTP cyclohydrolase I; 100.0 7.2E-34 1.6E-38 259.7 10.6 93 4-103 108-200 (201)
17 PF01227 GTP_cyclohydroI: GTP 100.0 4.4E-34 9.6E-39 257.2 8.7 92 4-102 88-179 (179)
18 PRK09347 folE GTP cyclohydrola 100.0 9.7E-34 2.1E-38 256.8 10.3 92 4-102 96-187 (188)
19 PTZ00484 GTP cyclohydrolase I; 100.0 1.6E-32 3.5E-37 258.8 10.8 92 4-102 167-258 (259)
20 KOG2698 GTP cyclohydrolase I [ 100.0 1.6E-31 3.6E-36 242.5 5.6 93 4-103 154-246 (247)
21 PRK13258 7-cyano-7-deazaguanin 99.9 6.2E-22 1.4E-26 166.9 10.5 83 205-289 12-95 (114)
22 PRK13258 7-cyano-7-deazaguanin 98.7 2.4E-08 5.3E-13 84.5 6.0 51 3-53 45-95 (114)
23 TIGR03139 QueF-II 7-cyano-7-de 93.8 0.71 1.5E-05 39.5 9.8 81 207-289 16-97 (115)
24 cd00651 TFold Tunnelling fold 93.5 1.1 2.3E-05 36.7 10.2 102 210-311 3-119 (122)
25 COG0780 Enzyme related to GTP 91.6 0.92 2E-05 40.4 7.8 79 210-290 41-120 (149)
26 PF14489 QueF: QueF-like prote 89.3 1.2 2.5E-05 35.8 5.9 59 228-288 1-60 (80)
27 PRK11792 queF 7-cyano-7-deazag 69.0 24 0.00052 34.5 8.0 76 218-302 176-252 (273)
28 cd00651 TFold Tunnelling fold 65.1 15 0.00033 29.8 5.1 53 11-63 53-107 (122)
29 PF08879 WRC: WRC; InterPro: 58.5 1.9 4.1E-05 31.2 -1.2 11 217-227 23-33 (46)
30 TIGR03138 QueF 7-cyano-7-deaza 52.8 70 0.0015 31.4 8.0 68 218-289 178-246 (275)
31 PF14489 QueF: QueF-like prote 38.0 41 0.00089 27.0 3.4 49 5-53 13-61 (80)
32 PF07809 RTP801_C: RTP801 C-te 34.6 81 0.0018 27.2 4.8 72 260-331 12-92 (116)
33 KOG3203 Mitochondrial/chloropl 34.0 42 0.00091 30.4 3.1 50 14-63 19-76 (165)
34 PRK11593 folB bifunctional dih 32.4 1.2E+02 0.0026 25.3 5.5 47 12-58 54-102 (119)
35 PRK11245 folX D-erythro-7,8-di 31.7 1.1E+02 0.0023 25.7 5.1 46 12-57 58-105 (120)
36 TIGR00525 folB dihydroneopteri 26.2 1.6E+02 0.0036 24.2 5.3 46 11-56 52-100 (116)
37 TIGR00525 folB dihydroneopteri 25.8 2.3E+02 0.005 23.3 6.1 42 248-289 52-97 (116)
38 TIGR00526 folB_dom FolB domain 25.2 1.9E+02 0.0041 23.9 5.5 45 12-56 54-101 (118)
39 PRK11593 folB bifunctional dih 24.3 1.8E+02 0.0038 24.2 5.1 48 248-295 53-103 (119)
40 cd00392 Ribosomal_L13 Ribosoma 23.6 1.1E+02 0.0024 26.0 3.7 39 24-62 7-53 (114)
41 COG1539 FolB Dihydroneopterin 21.9 1.5E+02 0.0032 25.4 4.2 36 22-57 67-103 (121)
42 COG0780 Enzyme related to GTP 21.5 2.1E+02 0.0045 25.6 5.2 52 5-56 71-122 (149)
43 PF02662 FlpD: Methyl-viologen 21.0 1.5E+02 0.0032 25.3 4.1 37 141-177 76-116 (124)
44 PRK11245 folX D-erythro-7,8-di 21.0 2.1E+02 0.0045 24.0 4.9 47 248-294 57-106 (120)
45 TIGR01077 L13_A_E ribosomal pr 20.4 1.1E+02 0.0024 27.0 3.2 35 24-62 6-40 (142)
46 PF07862 Nif11: Nitrogen fixat 20.3 62 0.0014 22.8 1.4 40 145-194 4-46 (49)
No 1
>PLN02531 GTP cyclohydrolase I
Probab=100.00 E-value=4.6e-103 Score=785.04 Aligned_cols=316 Identities=67% Similarity=1.075 Sum_probs=272.6
Q ss_pred CCeEEecchhhHHHHHHhcCcchHHHHHHHHHHHHHhccCCCeeEEEEEeeeccc--cccccccCCCCCCCce---EEEE
Q 019706 5 VNEFWDLSKFSRVAEVFSKRLQNPQRLADEVCSALQHGIKPAGVAVILQCSHLHF--PNLESAFLDPNHQGWV---KALV 79 (337)
Q Consensus 5 ~g~V~GLSKlaRvv~~~ArRlQ~QERLt~qIa~al~~~l~p~GVaV~iea~H~Cm--~~~~~~~~~~~~~~~~---~t~T 79 (337)
+|+|+|||||+||||+||||||+|||||+|||++|++.|+|+||+|+|+|+|||| .+||+. +. ++ .|+|
T Consensus 135 ~~~ViGLSKl~RiV~~~ArRlQvQERLT~qIA~aL~~~l~p~GVaVvieA~H~Cm~~~~RGv~-----~~-~s~~g~t~T 208 (469)
T PLN02531 135 GQRVVGLSKLSRVAEVFAKRLQDPQRLADEICSALHHGIKPAGVAVVLECSHIHFPNESLGSL-----DL-SSHQGWVKA 208 (469)
T ss_pred CCeEechHHHHHHHHHHhcCchhHHHHHHHHHHHHHHhhCCCcEEEEEEEEEeeecccccccc-----cC-CCCcceEEE
Confidence 7899999999999999999999999999999999999999999999999999999 688762 22 35 6777
Q ss_pred e--EEEeeecCCChHHHHHHHHHHhcCCCCCCccccccccccccCCCCCCCCCCCCCccccchHHHHHHHHHHHHHhCCC
Q 019706 80 S--SGAGVFENENADIWSDLLSLLRFRGINVDKTHIKDYAERCWCPSMSSSSSKHSSKIESANQGMVAAVVSILRSLGED 157 (337)
Q Consensus 80 s--~~~G~f~~~~~~~r~efl~li~~~g~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~avr~lL~alGeD 157 (337)
+ .++|+|++|++++|+||+.++..+|++.+...-++++-.||||.++. +.+ -+...+++++||+.||++||||
T Consensus 209 s~~~~~G~F~~d~~~~r~Efl~li~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~~e~av~~iL~alGeD 283 (469)
T PLN02531 209 SVCSGSGVFEDESGNLWEEFVSLLQFRGINVDKRCRKDSSSPCWCPSQDS---SSA--SPEPNPAMVSAVESILRSLGED 283 (469)
T ss_pred EeecccceecCCcHHHHHHHHHHhhcCCcccccccCCCccccccCccccc---ccC--CCCCHHHHHHHHHHHHHHhCCC
Confidence 6 55699998743899999999999999999988899999999999966 222 2447788999999999999999
Q ss_pred CCCccccCchHHHHHHHHHhhcc-----chhhhccCcccCccccCCCCCcccCCCCceEEEecceeeecccccccceeeE
Q 019706 158 PLREELLGTPRRFVKWLMNFENS-----IIDMKLNGFAFGRMDLLKPNGEVSRSNEHIHSELNLSFWSQCEHHLLPFHGV 232 (337)
Q Consensus 158 p~regL~~TP~RVak~~~e~~~~-----~~~~~~~g~~~~~~~~~~~~~~~~~~~~~mViv~~I~f~S~CEHHLLPf~G~ 232 (337)
|+|+||++||+||||||.+++.+ ++...+++....+.+..+. ..++++||+|+||+|||+||||||||+|+
T Consensus 284 p~RegL~~TP~RVak~~~e~~~G~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~mViv~dI~f~S~CEHHLLPF~G~ 359 (469)
T PLN02531 284 PLRKELVLTPSRFVRWLLNSTQGSRMGRNLEMKLNGFACEKMDPLHA----NLNEKTMHTELNLPFWSQCEHHLLPFYGV 359 (469)
T ss_pred CCchhhhhHHHHHHHHHHHHhcCcccCCCHHHHhhhhcccccccccc----cCCCCceEEEeCceEEEeccccccceEEE
Confidence 99999999999999999998432 1222221111110000000 13568999999999999999999999999
Q ss_pred EEEEEEeCCC----CccccchhHHHHHHHHhcchhhHHHHHHHHHHHHHhHc-CCCeEEEEEeeeeceeecccccCCceE
Q 019706 233 VHIGYFCAEG----LNPIGKSLLQSIVHFYGFKLQVQERLNRQIAETVSSLL-GGDVIVVVEASHTCMIARGIEKFGSST 307 (337)
Q Consensus 233 ~hVaYiP~~~----~~viGLSKl~RlV~~~ArRlQlQERLT~qIA~aL~~~l-~~GVaV~i~A~H~Cm~~RGv~~~~s~t 307 (337)
+||||||+++ .+|+|||||+|||++||||||+|||||+|||++|++ + ++||+|+|+|+||||.||||++++++|
T Consensus 360 ahVaYiP~~~~~~~~~ViGLSKl~RiV~~~arRlQvQERLT~qIA~al~~-l~p~GVaVvieA~H~CM~mRGV~k~~s~t 438 (469)
T PLN02531 360 VHVGYFCAEGGRGNRNPISRSLLQSIVHFYGFRLQVQERLTRQIAETVSS-LLGGDVMVVVEASHTCMISRGVEKFGSST 438 (469)
T ss_pred EEEEEecCCCCCcCceeechHHHHHHHHHHhccchHHHHHHHHHHHHHHH-hCCCceEEEEEeEEehhhhhCccCCCCeE
Confidence 9999999632 169999999999999999999999999999999999 7 599999999999999999999999999
Q ss_pred EEeeeeeeecCChHHHHHHHHccCCCCCC
Q 019706 308 ATIAVLGRFSTDHSARAMFLQNIPKTTFD 336 (337)
Q Consensus 308 ~T~a~~G~F~~~~~~r~Efl~li~~~~~~ 336 (337)
+|++++|.|++|+.+|+|||++|..+.+-
T Consensus 439 ~Tsa~~G~F~~d~~~R~eFl~li~~~~~~ 467 (469)
T PLN02531 439 ATIAVLGRFSSDAKARAMFLQSIATTNSS 467 (469)
T ss_pred EEEEeeeEeCCCHHHHHHHHHHhcccCCC
Confidence 99999999999999999999999887654
No 2
>COG0302 FolE GTP cyclohydrolase I [Coenzyme metabolism]
Probab=100.00 E-value=2.5e-76 Score=529.81 Aligned_cols=184 Identities=39% Similarity=0.615 Sum_probs=168.4
Q ss_pred cchHHHHHHHHHHHHHhCCCCCCccccCchHHHHHHHHHhhccchhhhccCcccCccccCCCCCcccCCCCceEEEecce
Q 019706 138 SANQGMVAAVVSILRSLGEDPLREELLGTPRRFVKWLMNFENSIIDMKLNGFAFGRMDLLKPNGEVSRSNEHIHSELNLS 217 (337)
Q Consensus 138 ~~~~~~e~avr~lL~alGeDp~regL~~TP~RVak~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~mViv~~I~ 217 (337)
.+.++++.||++||+++||||+||||.+||+||||||.++ |+||..+|.+.. ....|.+.+++||+|+||+
T Consensus 10 ~~~e~~e~avr~lL~~~Gedp~reGL~~TP~RVak~~~e~--------f~G~~~~~~~~~-l~~~fe~~~~emVlvkdI~ 80 (195)
T COG0302 10 TDAERIEAAVRELLEALGEDPDREGLLETPKRVAKAYREL--------FSGYDEDPAEIV-LEATFEEDHDEMVLVKDIE 80 (195)
T ss_pred hhHHHHHHHHHHHHHHhCCCCCchhhhhhHHHHHHHHHHH--------HhhhCCChHHhh-hcccccccCccEEEEeccc
Confidence 3445699999999999999999999999999999999987 567777766322 1123466679999999999
Q ss_pred eeecccccccceeeEEEEEEEeCCCCccccchhHHHHHHHHhcchhhHHHHHHHHHHHHHhHc-CCCeEEEEEeeeecee
Q 019706 218 FWSQCEHHLLPFHGVVHIGYFCAEGLNPIGKSLLQSIVHFYGFKLQVQERLNRQIAETVSSLL-GGDVIVVVEASHTCMI 296 (337)
Q Consensus 218 f~S~CEHHLLPf~G~~hVaYiP~~~~~viGLSKl~RlV~~~ArRlQlQERLT~qIA~aL~~~l-~~GVaV~i~A~H~Cm~ 296 (337)
|||+||||||||+|+|||||||+ ++|+|||||+|+||+||||||+|||||.|||++|++.| ++||+|+|+|+||||.
T Consensus 81 f~S~CEHHllPf~GkahVAYiP~--gkV~GlSKiaRiV~~~arR~QvQErlT~qIA~al~~~L~p~GVaVvieA~HmCm~ 158 (195)
T COG0302 81 FYSLCEHHLLPFFGKAHVAYIPD--GKVIGLSKIARIVDIFARRLQVQERLTEQIADALQEILKPRGVAVVIEAEHMCMS 158 (195)
T ss_pred eeeecccccccccceEEEEEcCC--CceecHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCceEEEEEEEEeeeh
Confidence 99999999999999999999994 68999999999999999999999999999999999988 5999999999999999
Q ss_pred ecccccCCceEEEeeeeeeecCChHHHHHHHHccCC
Q 019706 297 ARGIEKFGSSTATIAVLGRFSTDHSARAMFLQNIPK 332 (337)
Q Consensus 297 ~RGv~~~~s~t~T~a~~G~F~~~~~~r~Efl~li~~ 332 (337)
||||+|++|.|+|++++|.|++|+.+|.||+++|+.
T Consensus 159 mRGv~k~~s~t~Ts~~~G~F~~~~~~R~efl~li~~ 194 (195)
T COG0302 159 MRGVRKPGSSTVTSALRGLFKEDAKTRAEFLRLIKG 194 (195)
T ss_pred hcCccCCCceEEEEeeeeeeccCHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999975
No 3
>TIGR00063 folE GTP cyclohydrolase I. GTP cyclohydrolase I (EC 3.5.4.16) catalyzes the biosynthesis of formic acid and dihydroneopterin triphosphate from GTP. This reaction is the first step in the biosynthesis of tetrahydrofolate in prokaryotes, of tetrahydrobiopterin in vertebrates, and of pteridine-containing pigments in insects.
Probab=100.00 E-value=9.9e-74 Score=514.36 Aligned_cols=178 Identities=39% Similarity=0.617 Sum_probs=163.6
Q ss_pred HHHHHHHHHHHhCCCCCCccccCchHHHHHHHHHhhccchhhhccCcccCccccCCCCCcccCCCCceEEEecceeeecc
Q 019706 143 MVAAVVSILRSLGEDPLREELLGTPRRFVKWLMNFENSIIDMKLNGFAFGRMDLLKPNGEVSRSNEHIHSELNLSFWSQC 222 (337)
Q Consensus 143 ~e~avr~lL~alGeDp~regL~~TP~RVak~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~mViv~~I~f~S~C 222 (337)
+++||++||++|||||+||||.+||+||||||.++ ++||..+|...+... .+..++++||+|+||+|||+|
T Consensus 1 i~~av~~iL~alGeD~~regL~~TP~Rva~~~~e~--------~~G~~~~~~~~~~~~-~~~~~~~~mViv~~I~f~S~C 71 (180)
T TIGR00063 1 IAGAMREILELIGEDLNREGLLETPKRVAKMYVEI--------FSGYDYANFPKITLA-IFQEKHDEMVLVRDITFTSTC 71 (180)
T ss_pred CHHHHHHHHHHhCCCCCccchhhCHHHHHHHHHHH--------HhcccCChHHHHhcc-cCcCCCCcEEEEeCceEEEec
Confidence 47899999999999999999999999999999987 557766666555421 124467899999999999999
Q ss_pred cccccceeeEEEEEEEeCCCCccccchhHHHHHHHHhcchhhHHHHHHHHHHHHHhHc-CCCeEEEEEeeeeceeecccc
Q 019706 223 EHHLLPFHGVVHIGYFCAEGLNPIGKSLLQSIVHFYGFKLQVQERLNRQIAETVSSLL-GGDVIVVVEASHTCMIARGIE 301 (337)
Q Consensus 223 EHHLLPf~G~~hVaYiP~~~~~viGLSKl~RlV~~~ArRlQlQERLT~qIA~aL~~~l-~~GVaV~i~A~H~Cm~~RGv~ 301 (337)
|||||||+|++||||||+ ++|+|||||+||||+||||||+|||||+|||++|++.+ ++||+|+|+|+||||.||||+
T Consensus 72 EHHlLPf~G~~hVaYiP~--~~ViGLSKl~RiV~~~arRlQiQERlT~qIa~~l~~~l~p~gV~V~ieA~H~Cm~mRGv~ 149 (180)
T TIGR00063 72 EHHLVPFDGKAHVAYIPK--DKVIGLSKIARIVEFFARRPQVQERLTQQIAEALQEILEPNGVAVVVEATHMCMKMRGIR 149 (180)
T ss_pred cccccceeeEEEEEEecC--CceecHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhCCCCEEEEEEEEEeeEeeeCee
Confidence 999999999999999995 58999999999999999999999999999999999988 599999999999999999999
Q ss_pred cCCceEEEeeeeeeecCChHHHHHHHHccC
Q 019706 302 KFGSSTATIAVLGRFSTDHSARAMFLQNIP 331 (337)
Q Consensus 302 ~~~s~t~T~a~~G~F~~~~~~r~Efl~li~ 331 (337)
+++++|+|++++|.|++|+.+|+||++++.
T Consensus 150 ~~~s~t~T~a~~G~f~~~~~~r~ef~~~~~ 179 (180)
T TIGR00063 150 KPGSATVTSALGGLFKSDQKTRAEFLRLVR 179 (180)
T ss_pred cCCCcEEEEEeeeEeCCCHHHHHHHHHHhc
Confidence 999999999999999999999999999985
No 4
>PLN03044 GTP cyclohydrolase I; Provisional
Probab=100.00 E-value=1.1e-73 Score=516.86 Aligned_cols=180 Identities=39% Similarity=0.570 Sum_probs=163.0
Q ss_pred HHHHHHHHHHHhCCCCCCccccCchHHHHHHHHHhhccchhhhccCcccCccccCCCCCcccC-----CCCceEEEecce
Q 019706 143 MVAAVVSILRSLGEDPLREELLGTPRRFVKWLMNFENSIIDMKLNGFAFGRMDLLKPNGEVSR-----SNEHIHSELNLS 217 (337)
Q Consensus 143 ~e~avr~lL~alGeDp~regL~~TP~RVak~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-----~~~~mViv~~I~ 217 (337)
+++||++||++|||||+||||.+||+|||+||.++ ++||..++.+.+... .+.. ++++||+|+||+
T Consensus 1 ~~~av~~iL~~lGeD~~regL~~TP~Rva~~~~e~--------~~G~~~~~~~~~~~~-~~~~~~~~~~~~~mViv~~I~ 71 (188)
T PLN03044 1 MEQAVRTILECLGEDVEREGLLDTPKRVAKALLFM--------TQGYDQDPEVVLGTA-LFHEPEVHDGHEEMVVVRDID 71 (188)
T ss_pred CHHHHHHHHHHhCCCCCccchhhHHHHHHHHHHHH--------HhcccCCHHHHhhhc-ccccccccCCCCcEEEEeCce
Confidence 57899999999999999999999999999999987 456665555544321 1122 578999999999
Q ss_pred eeecccccccceeeEEEEEEEeCCCCccccchhHHHHHHHHhcchhhHHHHHHHHHHHHHhHc-CCCeEEEEEeeeecee
Q 019706 218 FWSQCEHHLLPFHGVVHIGYFCAEGLNPIGKSLLQSIVHFYGFKLQVQERLNRQIAETVSSLL-GGDVIVVVEASHTCMI 296 (337)
Q Consensus 218 f~S~CEHHLLPf~G~~hVaYiP~~~~~viGLSKl~RlV~~~ArRlQlQERLT~qIA~aL~~~l-~~GVaV~i~A~H~Cm~ 296 (337)
|||+||||||||+|++||||||+ +++|+|||||+||||+||||||+|||||+|||++|++.+ ++||+|+|+|+||||+
T Consensus 72 f~S~CEHHllPf~G~~hIaYiP~-~~~ViGLSKl~RiV~~~arRlQiQERLT~qIa~~l~~~l~p~gVaV~ieA~H~Cm~ 150 (188)
T PLN03044 72 IHSTCEETMVPFTGRIHVGYIPN-AGVILGLSKLARIAEVYARRLQTQERLTRQIADAIVESVEPLGVMVVVEAAHFCMV 150 (188)
T ss_pred EEEeccccccceeeeEEEEEECC-CCccccHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhhCCCceEEEEEEEEeeeh
Confidence 99999999999999999999996 368999999999999999999999999999999999988 5999999999999999
Q ss_pred ecccccCCceEEEeeeeeeecCChHHHHHHHHccCC
Q 019706 297 ARGIEKFGSSTATIAVLGRFSTDHSARAMFLQNIPK 332 (337)
Q Consensus 297 ~RGv~~~~s~t~T~a~~G~F~~~~~~r~Efl~li~~ 332 (337)
||||++++|.|+|++++|.|++|+.+|+||++++..
T Consensus 151 mRGv~~~~s~t~T~~~~G~F~~d~~~r~ef~~~i~~ 186 (188)
T PLN03044 151 MRGVEKHGASTTTSAVRGCFASNPKLRAEFFRIIRG 186 (188)
T ss_pred hhCccCCCCeEEEEEeeeEeCCCHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999854
No 5
>PRK12606 GTP cyclohydrolase I; Reviewed
Probab=100.00 E-value=2.8e-73 Score=518.55 Aligned_cols=182 Identities=36% Similarity=0.585 Sum_probs=168.2
Q ss_pred chHHHHHHHHHHHHHhCCCCCCccccCchHHHHHHHHHhhccchhhhccCcccCccccCCCCCcccCCCCceEEEeccee
Q 019706 139 ANQGMVAAVVSILRSLGEDPLREELLGTPRRFVKWLMNFENSIIDMKLNGFAFGRMDLLKPNGEVSRSNEHIHSELNLSF 218 (337)
Q Consensus 139 ~~~~~e~avr~lL~alGeDp~regL~~TP~RVak~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~mViv~~I~f 218 (337)
+.++++++|++||++|||||+|+||++||+||||||.++ ++||..++.+.+.. .|..++++||+|+||+|
T Consensus 18 d~~~~~~av~~iL~alGeD~~regL~~TP~RVak~~~e~--------~~G~~~~~~~~~~~--~f~~~~~~mViv~~I~f 87 (201)
T PRK12606 18 DPPALEAAVRELLEALGEDPDREGLLDTPQRVAKAMQYL--------CDGYEQDPAEALGA--LFDSDNDEMVIVRDIEL 87 (201)
T ss_pred CHHHHHHHHHHHHHHhCCCCCCcchhhHHHHHHHHHHHH--------hhccCCCHHHHHhc--cccCCCCcEEEEeCceE
Confidence 346899999999999999999999999999999999987 56777777666533 23456789999999999
Q ss_pred eecccccccceeeEEEEEEEeCCCCccccchhHHHHHHHHhcchhhHHHHHHHHHHHHHhHc-CCCeEEEEEeeeeceee
Q 019706 219 WSQCEHHLLPFHGVVHIGYFCAEGLNPIGKSLLQSIVHFYGFKLQVQERLNRQIAETVSSLL-GGDVIVVVEASHTCMIA 297 (337)
Q Consensus 219 ~S~CEHHLLPf~G~~hVaYiP~~~~~viGLSKl~RlV~~~ArRlQlQERLT~qIA~aL~~~l-~~GVaV~i~A~H~Cm~~ 297 (337)
||+||||||||+|++||||||+ ++|+|||||+|||++||||||+|||||+|||++|++.+ ++||+|+|+|+||||.|
T Consensus 88 ~S~CEHHLLPf~G~~hVaYiP~--~~VvGLSKl~RiV~~~arRlQvQERLT~qIa~~l~~~l~p~GVaV~ieA~H~Cm~~ 165 (201)
T PRK12606 88 YSLCEHHLLPFIGVAHVAYLPG--GKVLGLSKIARIVDMFARRLQIQENLTRQIATAVVTVTQARGAAVVIEAEHLCMMM 165 (201)
T ss_pred EEeccccccceeeEEEEEEeCC--CccccHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhCCCcEEEEEEEEEeeEhh
Confidence 9999999999999999999995 68999999999999999999999999999999999988 59999999999999999
Q ss_pred cccccCCceEEEeeeeeeecCChHHHHHHHHccCC
Q 019706 298 RGIEKFGSSTATIAVLGRFSTDHSARAMFLQNIPK 332 (337)
Q Consensus 298 RGv~~~~s~t~T~a~~G~F~~~~~~r~Efl~li~~ 332 (337)
||+++++++|+|++++|.|++|+.+|+|||+++..
T Consensus 166 RGv~~~~s~t~T~a~~G~F~~d~~~r~efl~~~~~ 200 (201)
T PRK12606 166 RGVRKQNSRMITSVMLGAFRDSAQTRNEFLRLIGR 200 (201)
T ss_pred cCccCCCCeEEEEEeeeEeCCCHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999853
No 6
>PRK09347 folE GTP cyclohydrolase I; Provisional
Probab=100.00 E-value=3.8e-73 Score=513.63 Aligned_cols=183 Identities=41% Similarity=0.617 Sum_probs=166.2
Q ss_pred chHHHHHHHHHHHHHhCCCCCCccccCchHHHHHHHHHhhccchhhhccCcccCccccCCCCCcccCCCCceEEEeccee
Q 019706 139 ANQGMVAAVVSILRSLGEDPLREELLGTPRRFVKWLMNFENSIIDMKLNGFAFGRMDLLKPNGEVSRSNEHIHSELNLSF 218 (337)
Q Consensus 139 ~~~~~e~avr~lL~alGeDp~regL~~TP~RVak~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~mViv~~I~f 218 (337)
+..+++++|++||++|||||+||||++||+||||||.++ ++||..+|...+........++++||+++||+|
T Consensus 4 ~~~~~~~~v~~iL~~lGeD~~regL~~TP~Rvak~~~e~--------~~Gy~~~~~~~~~~~~~~~~~~~~mV~v~~I~f 75 (188)
T PRK09347 4 DKEKIEEAVREILEALGEDPDREGLLDTPKRVAKMYEEL--------FSGYANDPKEVLNKTFEEEMGYDEMVLVKDITF 75 (188)
T ss_pred CHHHHHHHHHHHHHHhCCCCCccchhhhHHHHHHHHHHH--------HhhccCCHHHHHhhhccccCCCCceEEEeCceE
Confidence 346799999999999999999999999999999999887 457766666654432111234688999999999
Q ss_pred eecccccccceeeEEEEEEEeCCCCccccchhHHHHHHHHhcchhhHHHHHHHHHHHHHhHc-CCCeEEEEEeeeeceee
Q 019706 219 WSQCEHHLLPFHGVVHIGYFCAEGLNPIGKSLLQSIVHFYGFKLQVQERLNRQIAETVSSLL-GGDVIVVVEASHTCMIA 297 (337)
Q Consensus 219 ~S~CEHHLLPf~G~~hVaYiP~~~~~viGLSKl~RlV~~~ArRlQlQERLT~qIA~aL~~~l-~~GVaV~i~A~H~Cm~~ 297 (337)
||+||||||||+|++||||||+ ++|+|||||+|||++||||||+|||||+|||++|++.+ ++||+|+|+|+||||.|
T Consensus 76 ~S~CEHHllPf~G~~hIaYiP~--~~ViGLSKl~Riv~~~arRlQiQERlT~qIa~al~~~l~p~gV~V~ieA~H~Cm~~ 153 (188)
T PRK09347 76 YSMCEHHLLPFIGKAHVAYIPK--GKVIGLSKIARIVDFFARRPQVQERLTAQIADALQEILGPRGVAVVIEAEHMCMTM 153 (188)
T ss_pred EeecccccCceeeEEEEEEeCC--CccccHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHhhCCCceEEEEEEEEcChhh
Confidence 9999999999999999999995 68999999999999999999999999999999999988 59999999999999999
Q ss_pred cccccCCceEEEeeeeeeecCChHHHHHHHHccC
Q 019706 298 RGIEKFGSSTATIAVLGRFSTDHSARAMFLQNIP 331 (337)
Q Consensus 298 RGv~~~~s~t~T~a~~G~F~~~~~~r~Efl~li~ 331 (337)
|||+++++.|+|++++|.|++|+.+|+||+++++
T Consensus 154 RGv~~~~s~t~T~~~~G~F~~~~~~r~ef~~~i~ 187 (188)
T PRK09347 154 RGVRKPGSKTVTSALRGLFKTDPATRAEFLSLIR 187 (188)
T ss_pred hCceeCCceEEEEEEEeEeCCCHHHHHHHHHHhc
Confidence 9999999999999999999999999999999985
No 7
>cd00642 GTP_cyclohydro1 GTP cyclohydrolase I (GTP-CH-I) catalyzes the conversion of GTP into dihydroneopterin triphosphate. The enzyme product is the precursor of tetrahydrofolate in eubacteria, fungi, and plants and of the folate analogs in methanogenic bacteria. In vertebrates and insects it is the biosynthtic precursor of tetrahydrobiopterin (BH4) which is involved in the formation of catacholamines, nitric oxide, and the stimulation of T lymphocytes. The biosynthetic reaction of BH4 is controlled by a regulatory protein GFRP which mediates feedback inhibition of GTP-CH-I by BH4. This inhibition is reversed by phenylalanine. The decameric GTP-CH-I forms a complex with two pentameric GFRP in the presence of phenylalanine or a combination of GTP and BH4, respectively.
Probab=100.00 E-value=1e-72 Score=509.67 Aligned_cols=180 Identities=41% Similarity=0.604 Sum_probs=164.1
Q ss_pred hHHHHHHHHHHHHHhCCCCCCccccCchHHHHHHHHHhhccchhhhccCcccCc-cccCCCCCcccCCCCceEEEeccee
Q 019706 140 NQGMVAAVVSILRSLGEDPLREELLGTPRRFVKWLMNFENSIIDMKLNGFAFGR-MDLLKPNGEVSRSNEHIHSELNLSF 218 (337)
Q Consensus 140 ~~~~e~avr~lL~alGeDp~regL~~TP~RVak~~~e~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~mViv~~I~f 218 (337)
.+.++++|++||++|||||+|+||.+||+||||||.++ ++||..++ ...... .++.++++||+|+||+|
T Consensus 3 ~~~~e~av~~lL~alGeD~~regL~~TP~Rva~~~~e~--------~~G~~~~~~~~~~~~--~~~~~~~~mV~v~~I~f 72 (185)
T cd00642 3 LEKIAAAVREILELLGEDPNREGLLETPERVAKAYQEI--------TSGYDQALNDPKNTA--IFDEDHDEMVIVKDITL 72 (185)
T ss_pred HHHHHHHHHHHHHHhCCCCCccchhhHHHHHHHHHHHH--------hcCcCCCchhHHhhc--cccCCCCcEEEEeCeeE
Confidence 45799999999999999999999999999999999987 55776652 222221 23446789999999999
Q ss_pred eecccccccceeeEEEEEEEeCCCCccccchhHHHHHHHHhcchhhHHHHHHHHHHHHHhHc-CCCeEEEEEeeeeceee
Q 019706 219 WSQCEHHLLPFHGVVHIGYFCAEGLNPIGKSLLQSIVHFYGFKLQVQERLNRQIAETVSSLL-GGDVIVVVEASHTCMIA 297 (337)
Q Consensus 219 ~S~CEHHLLPf~G~~hVaYiP~~~~~viGLSKl~RlV~~~ArRlQlQERLT~qIA~aL~~~l-~~GVaV~i~A~H~Cm~~ 297 (337)
||+||||||||+|++||||||+ ++|+|||||+|||++||||||+|||||+|||++|++.+ ++||+|+|+|+||||.|
T Consensus 73 ~S~CEHHllPf~G~~~VaYiP~--~~ViGLSKl~RiV~~~arRlQiQERLt~qIa~al~~~l~~~gVaV~i~A~H~Cm~~ 150 (185)
T cd00642 73 FSMCEHHLVPFYGKVHIAYIPK--DKVIGLSKLARIVEFFSRRLQVQERLTKQIAVAIQEILGPQGVAVVIEATHMCMVM 150 (185)
T ss_pred EEeccccccceEEEEEEEEecC--CeeeeHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhCCCcEEEEEEEEEeeehh
Confidence 9999999999999999999995 78999999999999999999999999999999999988 59999999999999999
Q ss_pred cccccCCceEEEeeeeeeecCChHHHHHHHHccC
Q 019706 298 RGIEKFGSSTATIAVLGRFSTDHSARAMFLQNIP 331 (337)
Q Consensus 298 RGv~~~~s~t~T~a~~G~F~~~~~~r~Efl~li~ 331 (337)
|||++++++|+|++++|+|++|+++|+||++++.
T Consensus 151 RGv~~~~s~t~T~a~~G~F~~~~~~r~ef~~~~~ 184 (185)
T cd00642 151 RGVRKPGSKTVTSAMLGVFKEDPKTREEFLRLIR 184 (185)
T ss_pred cCcccCCCeEEEEEeEEEECCCHHHHHHHHHHhc
Confidence 9999999999999999999999999999999984
No 8
>PF01227 GTP_cyclohydroI: GTP cyclohydrolase I; InterPro: IPR020602 GTP cyclohydrolase I (3.5.4.16 from EC) catalyses the biosynthesis of formic acid and dihydroneopterin triphosphate from GTP. This reaction is the first step in the biosynthesis of tetrahydrofolate in prokaryotes, of tetrahydrobiopterin in vertebrates, and of pteridine-containing pigments in insects. The comparison of the sequence of the enzyme from bacterial and eukaryotic sources shows that the structure of this enzyme has been extremely well conserved throughout evolution []. NADPH-dependent nitrile oxidoreductases are involved in the biosynthesis of queuosine, a 7-deazaguanine-modified nucleoside found in tRNA(GUN) of bacteria and eukaryotes []. This entry represents a common fold found in GTP cyclohydrolase I and NADPH-dependent nitrile oxidoreducases [].; PDB: 1A8R_E 1GTP_L 1N3R_O 1N3T_O 1FBX_I 1N3S_B 1A9C_I 1IS8_E 1IS7_G 1WPL_F ....
Probab=100.00 E-value=3.5e-73 Score=510.26 Aligned_cols=177 Identities=42% Similarity=0.637 Sum_probs=157.7
Q ss_pred HHHHHHHHHHHhCCCCCCccccCchHHHHHHHHHhhccchhhhccCcccCc-cccCCCCCcccCCCCceEEEecceeeec
Q 019706 143 MVAAVVSILRSLGEDPLREELLGTPRRFVKWLMNFENSIIDMKLNGFAFGR-MDLLKPNGEVSRSNEHIHSELNLSFWSQ 221 (337)
Q Consensus 143 ~e~avr~lL~alGeDp~regL~~TP~RVak~~~e~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~mViv~~I~f~S~ 221 (337)
||+||++||++||+||+||||++||+|||+||.++ ++||..++ .+.+.. .+..++++||+|+||+|+|+
T Consensus 1 ie~av~~lL~~lG~D~~regL~~TP~Rva~~~~e~--------~~G~~~~~~~~~~~~--~~~~~~~~~Vvv~~I~f~S~ 70 (179)
T PF01227_consen 1 IEEAVRELLEALGEDPDREGLRDTPRRVAKAYAEL--------FSGYREDPEATLFKN--FFPDGYDEMVVVRDIPFYSM 70 (179)
T ss_dssp HHHHHHHHHHHTTB-TTSTTTTTHHHHHHHHHHHH--------TGGGCGGHHHHEEEC--CCEECCSSEEEEEEEEEEEE
T ss_pred ChHHHHHHHHHhCCCCCCchhhhCHHHHHHHHHHH--------cCCCCCChHHhhhcc--ccccCCCCeEEECCcceeee
Confidence 68999999999999999999999999999999998 45666666 344433 23466899999999999999
Q ss_pred ccccccceeeEEEEEEEeCCCCccccchhHHHHHHHHhcchhhHHHHHHHHHHHHHhHc-CCCeEEEEEeeeeceeeccc
Q 019706 222 CEHHLLPFHGVVHIGYFCAEGLNPIGKSLLQSIVHFYGFKLQVQERLNRQIAETVSSLL-GGDVIVVVEASHTCMIARGI 300 (337)
Q Consensus 222 CEHHLLPf~G~~hVaYiP~~~~~viGLSKl~RlV~~~ArRlQlQERLT~qIA~aL~~~l-~~GVaV~i~A~H~Cm~~RGv 300 (337)
||||||||+|++||||+|+ ++|+|||||+|||++||||||+|||||+|||++|++.+ ++||+|+|+|+||||+||||
T Consensus 71 CEHHllPf~G~~~VaYiP~--~~viGLSKl~RiV~~~arRlQlQERLT~qIa~~l~~~l~p~gV~V~i~A~H~Cm~~RGv 148 (179)
T PF01227_consen 71 CEHHLLPFFGTAHVAYIPG--GRVIGLSKLARIVDFFARRLQLQERLTRQIADALEEILGPKGVAVVIEAEHMCMTMRGV 148 (179)
T ss_dssp ETTTSEEEEEEEEEEEE-S--SEEE-HHHHHHHHHHHHSSEE-HHHHHHHHHHHHHHHHTSSEEEEEEEEEEHHHHSSTT
T ss_pred ccccccceeeeEEEEEEeC--CcccChhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhCCCeEEEEEEeccCCccccCc
Confidence 9999999999999999994 78999999999999999999999999999999999988 59999999999999999999
Q ss_pred ccCCceEEEeeeeeeecCChHHHHHHHHccC
Q 019706 301 EKFGSSTATIAVLGRFSTDHSARAMFLQNIP 331 (337)
Q Consensus 301 ~~~~s~t~T~a~~G~F~~~~~~r~Efl~li~ 331 (337)
+++++.|+|++++|.|++|+++|+|||++|+
T Consensus 149 ~~~~s~t~T~a~~G~f~~d~~~r~ef~~li~ 179 (179)
T PF01227_consen 149 RKPGSRTVTSAFRGAFAEDPSLRQEFLSLIR 179 (179)
T ss_dssp T-SS-EEEEEEEEEHHHHSHHHHHHHHHHCC
T ss_pred cCCCCEEEEEEEEeEeCCCHHHHHHHHHhhC
Confidence 9999999999999999999999999999985
No 9
>PTZ00484 GTP cyclohydrolase I; Provisional
Probab=100.00 E-value=6.8e-70 Score=511.74 Aligned_cols=182 Identities=38% Similarity=0.579 Sum_probs=165.2
Q ss_pred chHHHHHHHHHHHHHh-CCCCCCccccCchHHHHHHHHHhhccchhhhccCcccCccccCCCCCccc---CCCCceEEEe
Q 019706 139 ANQGMVAAVVSILRSL-GEDPLREELLGTPRRFVKWLMNFENSIIDMKLNGFAFGRMDLLKPNGEVS---RSNEHIHSEL 214 (337)
Q Consensus 139 ~~~~~e~avr~lL~al-GeDp~regL~~TP~RVak~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~---~~~~~mViv~ 214 (337)
...++++||++||++| ||||+|+||.+||+|||+||.++ +.||..++.+.+.... +. .++++||+|+
T Consensus 72 ~~~~ie~avr~iL~al~GeDp~RegL~~TP~RVak~~~e~--------~~Gy~~~~~~~l~~~~-~~~~~~~~~~mVvv~ 142 (259)
T PTZ00484 72 KKGAIESARRKILKSLEGEDPDRDGLKKTPKRVAKALEFL--------TKGYHMSVEEVIKKAL-FKVEPKNNDEMVKVR 142 (259)
T ss_pred hHHHHHHHHHHHHHHhcCCCCCCcchhhhHHHHHHHHHHH--------HhcccCCHHHHhcccc-cccccCCCCcEEEEe
Confidence 4468999999999999 99999999999999999999987 4466555555444211 12 3568999999
Q ss_pred cceeeecccccccceeeEEEEEEEeCCCCccccchhHHHHHHHHhcchhhHHHHHHHHHHHHHhHc-CCCeEEEEEeeee
Q 019706 215 NLSFWSQCEHHLLPFHGVVHIGYFCAEGLNPIGKSLLQSIVHFYGFKLQVQERLNRQIAETVSSLL-GGDVIVVVEASHT 293 (337)
Q Consensus 215 ~I~f~S~CEHHLLPf~G~~hVaYiP~~~~~viGLSKl~RlV~~~ArRlQlQERLT~qIA~aL~~~l-~~GVaV~i~A~H~ 293 (337)
||+|||+||||||||+|++||||||+ ++|+|||||+|||++||||||+|||||+|||++|++.+ ++||+|+|+|+||
T Consensus 143 dI~f~S~CEHHLLPf~G~~hIaYiP~--~~ViGLSKl~RiV~~~arRlQiQERLT~qIAdaL~~~L~p~GVaV~ieA~H~ 220 (259)
T PTZ00484 143 DIDIFSLCEHHLLPFEGECTIGYIPN--KKVLGLSKFARIIEIFSRRLQVQERLTQQIANALQKYLKPMGVAVVIVASHM 220 (259)
T ss_pred ccceEEecccccCceEEEEEEEEecC--CeEecHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhCCCceEEEEEEEEe
Confidence 99999999999999999999999995 58999999999999999999999999999999999998 5999999999999
Q ss_pred ceeecccccCCceEEEeeeeeeecCChHHHHHHHHccC
Q 019706 294 CMIARGIEKFGSSTATIAVLGRFSTDHSARAMFLQNIP 331 (337)
Q Consensus 294 Cm~~RGv~~~~s~t~T~a~~G~F~~~~~~r~Efl~li~ 331 (337)
||.||||++++++|+|++++|.|++|+.+|+||++++.
T Consensus 221 Cm~mRGv~~~~s~t~Tsa~~G~F~~d~~~r~Ef~~li~ 258 (259)
T PTZ00484 221 CMNMRGVQKHDASTTTSAYLGVFRSDPKLRAEFFSLIK 258 (259)
T ss_pred eEhhcCeecCCCeEEEEEeEeEeCCCHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999985
No 10
>KOG2698 consensus GTP cyclohydrolase I [Coenzyme transport and metabolism]
Probab=100.00 E-value=7e-69 Score=485.43 Aligned_cols=225 Identities=40% Similarity=0.590 Sum_probs=187.9
Q ss_pred EEEEeEEEeeecCCChHHHHHHHHHHhcCCCCCCccccccccccccCCCCCCCCCCCCCccccchHHHHHHHHHHHHHhC
Q 019706 76 KALVSSGAGVFENENADIWSDLLSLLRFRGINVDKTHIKDYAERCWCPSMSSSSSKHSSKIESANQGMVAAVVSILRSLG 155 (337)
Q Consensus 76 ~t~Ts~~~G~f~~~~~~~r~efl~li~~~g~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~avr~lL~alG 155 (337)
+..+++..+++++. + .|-||...+..+|...+-+ +.+...+.-.+.|..|++.||..||
T Consensus 21 ~~~~~sg~~v~~d~-~-s~pe~~s~l~~nGs~~~~~-------------------~~~~~~e~~lp~m~~a~~siL~~LG 79 (247)
T KOG2698|consen 21 SLSASSGPPVDEDE-P-SWPEAQSALCRNGSSPEVD-------------------SSEEESEEVLPEMANAYSSILKSLG 79 (247)
T ss_pred ccccCCCCCccccc-c-cchhhhhhhhcCCCCcccc-------------------cCCccchhHhHHHHHHHHHHHHHhc
Confidence 34456667788764 3 3778877665555442221 1122345567899999999999999
Q ss_pred CCCCCccccCchHHHHHHHHHhhccchhhhccCcccCccccCCCCCcccCCCCceEEEecceeeecccccccceeeEEEE
Q 019706 156 EDPLREELLGTPRRFVKWLMNFENSIIDMKLNGFAFGRMDLLKPNGEVSRSNEHIHSELNLSFWSQCEHHLLPFHGVVHI 235 (337)
Q Consensus 156 eDp~regL~~TP~RVak~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~mViv~~I~f~S~CEHHLLPf~G~~hV 235 (337)
|||+|.||.+||.|+|||+..|+. ||..+-.++++. ..|.+++++||+|+||..||||||||+||+|++||
T Consensus 80 Edp~RqgLl~TP~R~aKaMl~Ftk--------gy~~~l~dvlN~-AvfdedhdEmvivkdiemfSmCEHHLvPF~GkVhI 150 (247)
T KOG2698|consen 80 EDPNRQGLLKTPERAAKAMLYFTK--------GYEQNLNDVLNE-AVFDEDHDEMVIVKDIEMFSMCEHHLVPFYGKVHI 150 (247)
T ss_pred CCcchhhhhcCHHHHHHHHHHHHh--------hHHHHHHHHhhh-hccccccceeEEEecchHHHHhhhccccceeeEEE
Confidence 999999999999999999999853 222222222221 12477899999999999999999999999999999
Q ss_pred EEEeCCCCccccchhHHHHHHHHhcchhhHHHHHHHHHHHHHhHc-CCCeEEEEEeeeeceeecccccCCceEEEeeeee
Q 019706 236 GYFCAEGLNPIGKSLLQSIVHFYGFKLQVQERLNRQIAETVSSLL-GGDVIVVVEASHTCMIARGIEKFGSSTATIAVLG 314 (337)
Q Consensus 236 aYiP~~~~~viGLSKl~RlV~~~ArRlQlQERLT~qIA~aL~~~l-~~GVaV~i~A~H~Cm~~RGv~~~~s~t~T~a~~G 314 (337)
||||++ +|+|||||+|||++|+||||+|||||+|||.+|..++ |.||+|++||.||||.||||+|.+|+|+|+++.|
T Consensus 151 GY~pnk--kvlGlSklarIve~ysrrLQVQERlTkQIA~a~s~~v~p~gVaVV~Ea~HmCMVmRGvqK~~SsTvTs~mlG 228 (247)
T KOG2698|consen 151 GYIPNK--KVLGLSKLARIVEMYSRRLQVQERLTKQIAVALSQAVQPAGVAVVVEATHMCMVMRGVQKIGSSTVTSTMLG 228 (247)
T ss_pred eeccCC--ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceEEEEecceeeeeeecccccCcchhhhhhhh
Confidence 999975 5799999999999999999999999999999999988 5999999999999999999999999999999999
Q ss_pred eecCChHHHHHHHHccCC
Q 019706 315 RFSTDHSARAMFLQNIPK 332 (337)
Q Consensus 315 ~F~~~~~~r~Efl~li~~ 332 (337)
+|.+|+.+|.|||.+|+.
T Consensus 229 vFr~d~ktReeFl~li~~ 246 (247)
T KOG2698|consen 229 VFRDDPKTREEFLNLINS 246 (247)
T ss_pred hhccCchhHHHHHHHhcc
Confidence 999999999999999975
No 11
>PLN02531 GTP cyclohydrolase I
Probab=100.00 E-value=1.7e-64 Score=506.95 Aligned_cols=193 Identities=25% Similarity=0.330 Sum_probs=166.8
Q ss_pred ccccchHHHHHHHHHHHHHhCCCCCCccccCchHHHHHHHHHhhccchhhhccCcccCccccCCCC-C-c--------cc
Q 019706 135 KIESANQGMVAAVVSILRSLGEDPLREELLGTPRRFVKWLMNFENSIIDMKLNGFAFGRMDLLKPN-G-E--------VS 204 (337)
Q Consensus 135 ~~~~~~~~~e~avr~lL~alGeDp~regL~~TP~RVak~~~e~~~~~~~~~~~g~~~~~~~~~~~~-~-~--------~~ 204 (337)
++..+..+++++|++||++|||||+|+||.+||+||||||.+++ .||..++.+.+... + . ..
T Consensus 27 ~~~~~~~~ie~av~~iL~alGeD~~regL~~TP~RVaka~~e~~--------~Gy~~~~~~~~~~~~f~~~~~~~~~~~~ 98 (469)
T PLN02531 27 EDQPETLAIESAVKVLLQGLGEDVNREGLKKTPLRVAKALREAT--------RGYKQSAKDIVGGALFPEAGLDDGVGHG 98 (469)
T ss_pred ccCCCHHHHHHHHHHHHHHhCCCCCCcchhhhHHHHHHHHHHHh--------cccCCChHHHhhhhcccccccccccccc
Confidence 44556778999999999999999999999999999999999873 45544444433210 0 0 01
Q ss_pred CCCCceEEEecceeeecccccccceeeEEEEEEEeCCCCccccchhHHHHHHHHhcchhhHHHHHHHHHHHHHhHc-CCC
Q 019706 205 RSNEHIHSELNLSFWSQCEHHLLPFHGVVHIGYFCAEGLNPIGKSLLQSIVHFYGFKLQVQERLNRQIAETVSSLL-GGD 283 (337)
Q Consensus 205 ~~~~~mViv~~I~f~S~CEHHLLPf~G~~hVaYiP~~~~~viGLSKl~RlV~~~ArRlQlQERLT~qIA~aL~~~l-~~G 283 (337)
.++++||+|+||+|||+||||||||+|++||||||++ ++|+|||||+|||++||||||+|||||+|||++|++.+ ++|
T Consensus 99 ~~~~emVvv~dI~f~S~CEHHlLPf~G~ahVaYiP~~-~~ViGLSKl~RiV~~~ArRlQvQERLT~qIA~aL~~~l~p~G 177 (469)
T PLN02531 99 GGCGGLVVVRDLDLFSYCESCLLPFQVKCHIGYVPSG-QRVVGLSKLSRVAEVFAKRLQDPQRLADEICSALHHGIKPAG 177 (469)
T ss_pred CCCCceEEEeCeeEEEeccccccceeeEEEEEEEcCC-CeEechHHHHHHHHHHhcCchhHHHHHHHHHHHHHHhhCCCc
Confidence 1357899999999999999999999999999999963 68999999999999999999999999999999999988 599
Q ss_pred eEEEEEeeeece--eecccccCCc---eEEEeee--eeeecCCh-HHHHHHHHccCCCCCC
Q 019706 284 VIVVVEASHTCM--IARGIEKFGS---STATIAV--LGRFSTDH-SARAMFLQNIPKTTFD 336 (337)
Q Consensus 284 VaV~i~A~H~Cm--~~RGv~~~~s---~t~T~a~--~G~F~~~~-~~r~Efl~li~~~~~~ 336 (337)
|+|+|+|+|||| .||||+++++ .|+|+++ +|.|++|+ .+|+||+.+++.+..|
T Consensus 178 VaVvieA~H~Cm~~~~RGv~~~~s~~g~t~Ts~~~~~G~F~~d~~~~r~Efl~li~~~~~~ 238 (469)
T PLN02531 178 VAVVLECSHIHFPNESLGSLDLSSHQGWVKASVCSGSGVFEDESGNLWEEFVSLLQFRGIN 238 (469)
T ss_pred EEEEEEEEEeeecccccccccCCCCcceEEEEeecccceecCCcHHHHHHHHHHhhcCCcc
Confidence 999999999999 8999999999 9999844 59999887 8999999999876543
No 12
>COG0302 FolE GTP cyclohydrolase I [Coenzyme metabolism]
Probab=100.00 E-value=7.1e-36 Score=268.68 Aligned_cols=93 Identities=29% Similarity=0.526 Sum_probs=87.8
Q ss_pred CCCeEEecchhhHHHHHHhcCcchHHHHHHHHHHHHHhccCCCeeEEEEEeeeccccccccccCCCCCCCceEEEEeEEE
Q 019706 4 LVNEFWDLSKFSRVAEVFSKRLQNPQRLADEVCSALQHGIKPAGVAVILQCSHLHFPNLESAFLDPNHQGWVKALVSSGA 83 (337)
Q Consensus 4 ~~g~V~GLSKlaRvv~~~ArRlQ~QERLt~qIa~al~~~l~p~GVaV~iea~H~Cm~~~~~~~~~~~~~~~~~t~Ts~~~ 83 (337)
|+|+|+|||||+|+||+||||||+|||||.|||++|++.|+|+||||+|+|+||||.|||+ ++++ +.|+||+++
T Consensus 102 P~gkV~GlSKiaRiV~~~arR~QvQErlT~qIA~al~~~L~p~GVaVvieA~HmCm~mRGv-----~k~~-s~t~Ts~~~ 175 (195)
T COG0302 102 PDGKVIGLSKIARIVDIFARRLQVQERLTEQIADALQEILKPRGVAVVIEAEHMCMSMRGV-----RKPG-SSTVTSALR 175 (195)
T ss_pred CCCceecHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCceEEEEEEEEeeehhcCc-----cCCC-ceEEEEeee
Confidence 5999999999999999999999999999999999999999999999999999999999986 3444 899999999
Q ss_pred eeecCCChHHHHHHHHHHhc
Q 019706 84 GVFENENADIWSDLLSLLRF 103 (337)
Q Consensus 84 G~f~~~~~~~r~efl~li~~ 103 (337)
|+|++| ...|.|||.+++.
T Consensus 176 G~F~~~-~~~R~efl~li~~ 194 (195)
T COG0302 176 GLFKED-AKTRAEFLRLIKG 194 (195)
T ss_pred eeeccC-HHHHHHHHHHHhc
Confidence 999986 7999999999975
No 13
>PLN03044 GTP cyclohydrolase I; Provisional
Probab=100.00 E-value=1.8e-34 Score=261.43 Aligned_cols=93 Identities=24% Similarity=0.450 Sum_probs=86.9
Q ss_pred CC-CeEEecchhhHHHHHHhcCcchHHHHHHHHHHHHHhccCCCeeEEEEEeeeccccccccccCCCCCCCceEEEEeEE
Q 019706 4 LV-NEFWDLSKFSRVAEVFSKRLQNPQRLADEVCSALQHGIKPAGVAVILQCSHLHFPNLESAFLDPNHQGWVKALVSSG 82 (337)
Q Consensus 4 ~~-g~V~GLSKlaRvv~~~ArRlQ~QERLt~qIa~al~~~l~p~GVaV~iea~H~Cm~~~~~~~~~~~~~~~~~t~Ts~~ 82 (337)
|+ |+|+|||||+||||+||||||+|||||+|||++|++.|+|+||+|+|+|+||||.+||+ ++. ++.|+|+++
T Consensus 93 P~~~~ViGLSKl~RiV~~~arRlQiQERLT~qIa~~l~~~l~p~gVaV~ieA~H~Cm~mRGv-----~~~-~s~t~T~~~ 166 (188)
T PLN03044 93 PNAGVILGLSKLARIAEVYARRLQTQERLTRQIADAIVESVEPLGVMVVVEAAHFCMVMRGV-----EKH-GASTTTSAV 166 (188)
T ss_pred CCCCccccHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhhCCCceEEEEEEEEeeehhhCc-----cCC-CCeEEEEEe
Confidence 57 99999999999999999999999999999999999999999999999999999999986 344 489999999
Q ss_pred EeeecCCChHHHHHHHHHHhc
Q 019706 83 AGVFENENADIWSDLLSLLRF 103 (337)
Q Consensus 83 ~G~f~~~~~~~r~efl~li~~ 103 (337)
+|+|++| +.+|+||++++..
T Consensus 167 ~G~F~~d-~~~r~ef~~~i~~ 186 (188)
T PLN03044 167 RGCFASN-PKLRAEFFRIIRG 186 (188)
T ss_pred eeEeCCC-HHHHHHHHHHHhc
Confidence 9999986 7999999999953
No 14
>TIGR00063 folE GTP cyclohydrolase I. GTP cyclohydrolase I (EC 3.5.4.16) catalyzes the biosynthesis of formic acid and dihydroneopterin triphosphate from GTP. This reaction is the first step in the biosynthesis of tetrahydrofolate in prokaryotes, of tetrahydrobiopterin in vertebrates, and of pteridine-containing pigments in insects.
Probab=100.00 E-value=2.1e-34 Score=259.56 Aligned_cols=92 Identities=27% Similarity=0.470 Sum_probs=86.5
Q ss_pred CCCeEEecchhhHHHHHHhcCcchHHHHHHHHHHHHHhccCCCeeEEEEEeeeccccccccccCCCCCCCceEEEEeEEE
Q 019706 4 LVNEFWDLSKFSRVAEVFSKRLQNPQRLADEVCSALQHGIKPAGVAVILQCSHLHFPNLESAFLDPNHQGWVKALVSSGA 83 (337)
Q Consensus 4 ~~g~V~GLSKlaRvv~~~ArRlQ~QERLt~qIa~al~~~l~p~GVaV~iea~H~Cm~~~~~~~~~~~~~~~~~t~Ts~~~ 83 (337)
|+|+|+|||||+||||+||||||+|||||+||||+|++.|+|+||+|+|+|+||||.+||+ ++. ++.|+|++++
T Consensus 88 P~~~ViGLSKl~RiV~~~arRlQiQERlT~qIa~~l~~~l~p~gV~V~ieA~H~Cm~mRGv-----~~~-~s~t~T~a~~ 161 (180)
T TIGR00063 88 PKDKVIGLSKIARIVEFFARRPQVQERLTQQIAEALQEILEPNGVAVVVEATHMCMKMRGI-----RKP-GSATVTSALG 161 (180)
T ss_pred cCCceecHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhCCCCEEEEEEEEEeeEeeeCe-----ecC-CCcEEEEEee
Confidence 6999999999999999999999999999999999999999999999999999999999986 344 4899999999
Q ss_pred eeecCCChHHHHHHHHHHh
Q 019706 84 GVFENENADIWSDLLSLLR 102 (337)
Q Consensus 84 G~f~~~~~~~r~efl~li~ 102 (337)
|+|++| +.+|+||++++.
T Consensus 162 G~f~~~-~~~r~ef~~~~~ 179 (180)
T TIGR00063 162 GLFKSD-QKTRAEFLRLVR 179 (180)
T ss_pred eEeCCC-HHHHHHHHHHhc
Confidence 999986 799999999984
No 15
>cd00642 GTP_cyclohydro1 GTP cyclohydrolase I (GTP-CH-I) catalyzes the conversion of GTP into dihydroneopterin triphosphate. The enzyme product is the precursor of tetrahydrofolate in eubacteria, fungi, and plants and of the folate analogs in methanogenic bacteria. In vertebrates and insects it is the biosynthtic precursor of tetrahydrobiopterin (BH4) which is involved in the formation of catacholamines, nitric oxide, and the stimulation of T lymphocytes. The biosynthetic reaction of BH4 is controlled by a regulatory protein GFRP which mediates feedback inhibition of GTP-CH-I by BH4. This inhibition is reversed by phenylalanine. The decameric GTP-CH-I forms a complex with two pentameric GFRP in the presence of phenylalanine or a combination of GTP and BH4, respectively.
Probab=100.00 E-value=7.8e-34 Score=256.82 Aligned_cols=92 Identities=30% Similarity=0.501 Sum_probs=86.7
Q ss_pred CCCeEEecchhhHHHHHHhcCcchHHHHHHHHHHHHHhccCCCeeEEEEEeeeccccccccccCCCCCCCceEEEEeEEE
Q 019706 4 LVNEFWDLSKFSRVAEVFSKRLQNPQRLADEVCSALQHGIKPAGVAVILQCSHLHFPNLESAFLDPNHQGWVKALVSSGA 83 (337)
Q Consensus 4 ~~g~V~GLSKlaRvv~~~ArRlQ~QERLt~qIa~al~~~l~p~GVaV~iea~H~Cm~~~~~~~~~~~~~~~~~t~Ts~~~ 83 (337)
|+|+|+|||||+||||+||||||+|||||+|||++|++.|+|+||+|+|+|+||||.+||+ + ++++.|+|++++
T Consensus 93 P~~~ViGLSKl~RiV~~~arRlQiQERLt~qIa~al~~~l~~~gVaV~i~A~H~Cm~~RGv-----~-~~~s~t~T~a~~ 166 (185)
T cd00642 93 PKDKVIGLSKLARIVEFFSRRLQVQERLTKQIAVAIQEILGPQGVAVVIEATHMCMVMRGV-----R-KPGSKTVTSAML 166 (185)
T ss_pred cCCeeeeHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhCCCcEEEEEEEEEeeehhcCc-----c-cCCCeEEEEEeE
Confidence 6999999999999999999999999999999999999999999999999999999999986 3 445899999999
Q ss_pred eeecCCChHHHHHHHHHHh
Q 019706 84 GVFENENADIWSDLLSLLR 102 (337)
Q Consensus 84 G~f~~~~~~~r~efl~li~ 102 (337)
|+|++| +++|+||++++.
T Consensus 167 G~F~~~-~~~r~ef~~~~~ 184 (185)
T cd00642 167 GVFKED-PKTREEFLRLIR 184 (185)
T ss_pred EEECCC-HHHHHHHHHHhc
Confidence 999986 799999999984
No 16
>PRK12606 GTP cyclohydrolase I; Reviewed
Probab=100.00 E-value=7.2e-34 Score=259.71 Aligned_cols=93 Identities=23% Similarity=0.363 Sum_probs=87.2
Q ss_pred CCCeEEecchhhHHHHHHhcCcchHHHHHHHHHHHHHhccCCCeeEEEEEeeeccccccccccCCCCCCCceEEEEeEEE
Q 019706 4 LVNEFWDLSKFSRVAEVFSKRLQNPQRLADEVCSALQHGIKPAGVAVILQCSHLHFPNLESAFLDPNHQGWVKALVSSGA 83 (337)
Q Consensus 4 ~~g~V~GLSKlaRvv~~~ArRlQ~QERLt~qIa~al~~~l~p~GVaV~iea~H~Cm~~~~~~~~~~~~~~~~~t~Ts~~~ 83 (337)
|+|+|+|||||+||||+||||||+|||||+|||++|++.|+|+||+|+|+|+||||.+||+ + +.++.|+|++++
T Consensus 108 P~~~VvGLSKl~RiV~~~arRlQvQERLT~qIa~~l~~~l~p~GVaV~ieA~H~Cm~~RGv-----~-~~~s~t~T~a~~ 181 (201)
T PRK12606 108 PGGKVLGLSKIARIVDMFARRLQIQENLTRQIATAVVTVTQARGAAVVIEAEHLCMMMRGV-----R-KQNSRMITSVML 181 (201)
T ss_pred CCCccccHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhCCCcEEEEEEEEEeeEhhcCc-----c-CCCCeEEEEEee
Confidence 6899999999999999999999999999999999999999999999999999999999986 3 345899999999
Q ss_pred eeecCCChHHHHHHHHHHhc
Q 019706 84 GVFENENADIWSDLLSLLRF 103 (337)
Q Consensus 84 G~f~~~~~~~r~efl~li~~ 103 (337)
|+|++| +++|+||+.++..
T Consensus 182 G~F~~d-~~~r~efl~~~~~ 200 (201)
T PRK12606 182 GAFRDS-AQTRNEFLRLIGR 200 (201)
T ss_pred eEeCCC-HHHHHHHHHHhcc
Confidence 999986 7999999999854
No 17
>PF01227 GTP_cyclohydroI: GTP cyclohydrolase I; InterPro: IPR020602 GTP cyclohydrolase I (3.5.4.16 from EC) catalyses the biosynthesis of formic acid and dihydroneopterin triphosphate from GTP. This reaction is the first step in the biosynthesis of tetrahydrofolate in prokaryotes, of tetrahydrobiopterin in vertebrates, and of pteridine-containing pigments in insects. The comparison of the sequence of the enzyme from bacterial and eukaryotic sources shows that the structure of this enzyme has been extremely well conserved throughout evolution []. NADPH-dependent nitrile oxidoreductases are involved in the biosynthesis of queuosine, a 7-deazaguanine-modified nucleoside found in tRNA(GUN) of bacteria and eukaryotes []. This entry represents a common fold found in GTP cyclohydrolase I and NADPH-dependent nitrile oxidoreducases [].; PDB: 1A8R_E 1GTP_L 1N3R_O 1N3T_O 1FBX_I 1N3S_B 1A9C_I 1IS8_E 1IS7_G 1WPL_F ....
Probab=100.00 E-value=4.4e-34 Score=257.17 Aligned_cols=92 Identities=27% Similarity=0.481 Sum_probs=82.5
Q ss_pred CCCeEEecchhhHHHHHHhcCcchHHHHHHHHHHHHHhccCCCeeEEEEEeeeccccccccccCCCCCCCceEEEEeEEE
Q 019706 4 LVNEFWDLSKFSRVAEVFSKRLQNPQRLADEVCSALQHGIKPAGVAVILQCSHLHFPNLESAFLDPNHQGWVKALVSSGA 83 (337)
Q Consensus 4 ~~g~V~GLSKlaRvv~~~ArRlQ~QERLt~qIa~al~~~l~p~GVaV~iea~H~Cm~~~~~~~~~~~~~~~~~t~Ts~~~ 83 (337)
|+|+|+|||||+||||+||||||+|||||+|||++|++.|+|+||+|+|+|+||||.+||+ ++. ++.|+|++++
T Consensus 88 P~~~viGLSKl~RiV~~~arRlQlQERLT~qIa~~l~~~l~p~gV~V~i~A~H~Cm~~RGv-----~~~-~s~t~T~a~~ 161 (179)
T PF01227_consen 88 PGGRVIGLSKLARIVDFFARRLQLQERLTRQIADALEEILGPKGVAVVIEAEHMCMTMRGV-----RKP-GSRTVTSAFR 161 (179)
T ss_dssp -SSEEE-HHHHHHHHHHHHSSEE-HHHHHHHHHHHHHHHHTSSEEEEEEEEEEHHHHSSTT-----T-S-S-EEEEEEEE
T ss_pred eCCcccChhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhCCCeEEEEEEeccCCccccCc-----cCC-CCEEEEEEEE
Confidence 6999999999999999999999999999999999999999999999999999999999986 344 4899999999
Q ss_pred eeecCCChHHHHHHHHHHh
Q 019706 84 GVFENENADIWSDLLSLLR 102 (337)
Q Consensus 84 G~f~~~~~~~r~efl~li~ 102 (337)
|.|++| +++|+|||++|+
T Consensus 162 G~f~~d-~~~r~ef~~li~ 179 (179)
T PF01227_consen 162 GAFAED-PSLRQEFLSLIR 179 (179)
T ss_dssp EHHHHS-HHHHHHHHHHCC
T ss_pred eEeCCC-HHHHHHHHHhhC
Confidence 999986 899999999874
No 18
>PRK09347 folE GTP cyclohydrolase I; Provisional
Probab=100.00 E-value=9.7e-34 Score=256.78 Aligned_cols=92 Identities=28% Similarity=0.469 Sum_probs=86.6
Q ss_pred CCCeEEecchhhHHHHHHhcCcchHHHHHHHHHHHHHhccCCCeeEEEEEeeeccccccccccCCCCCCCceEEEEeEEE
Q 019706 4 LVNEFWDLSKFSRVAEVFSKRLQNPQRLADEVCSALQHGIKPAGVAVILQCSHLHFPNLESAFLDPNHQGWVKALVSSGA 83 (337)
Q Consensus 4 ~~g~V~GLSKlaRvv~~~ArRlQ~QERLt~qIa~al~~~l~p~GVaV~iea~H~Cm~~~~~~~~~~~~~~~~~t~Ts~~~ 83 (337)
|+|+|+|||||+||||+||||||+|||||+|||++|++.|+|+||+|+|+|+||||.+||+ + +.++.|+|++++
T Consensus 96 P~~~ViGLSKl~Riv~~~arRlQiQERlT~qIa~al~~~l~p~gV~V~ieA~H~Cm~~RGv-----~-~~~s~t~T~~~~ 169 (188)
T PRK09347 96 PKGKVIGLSKIARIVDFFARRPQVQERLTAQIADALQEILGPRGVAVVIEAEHMCMTMRGV-----R-KPGSKTVTSALR 169 (188)
T ss_pred CCCccccHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHhhCCCceEEEEEEEEcChhhhCc-----e-eCCceEEEEEEE
Confidence 6999999999999999999999999999999999999999999999999999999999986 3 344899999999
Q ss_pred eeecCCChHHHHHHHHHHh
Q 019706 84 GVFENENADIWSDLLSLLR 102 (337)
Q Consensus 84 G~f~~~~~~~r~efl~li~ 102 (337)
|+|++| +++|+||+++++
T Consensus 170 G~F~~~-~~~r~ef~~~i~ 187 (188)
T PRK09347 170 GLFKTD-PATRAEFLSLIR 187 (188)
T ss_pred eEeCCC-HHHHHHHHHHhc
Confidence 999986 799999999984
No 19
>PTZ00484 GTP cyclohydrolase I; Provisional
Probab=99.98 E-value=1.6e-32 Score=258.77 Aligned_cols=92 Identities=33% Similarity=0.531 Sum_probs=86.6
Q ss_pred CCCeEEecchhhHHHHHHhcCcchHHHHHHHHHHHHHhccCCCeeEEEEEeeeccccccccccCCCCCCCceEEEEeEEE
Q 019706 4 LVNEFWDLSKFSRVAEVFSKRLQNPQRLADEVCSALQHGIKPAGVAVILQCSHLHFPNLESAFLDPNHQGWVKALVSSGA 83 (337)
Q Consensus 4 ~~g~V~GLSKlaRvv~~~ArRlQ~QERLt~qIa~al~~~l~p~GVaV~iea~H~Cm~~~~~~~~~~~~~~~~~t~Ts~~~ 83 (337)
|+++|+|||||+||||+||||||+|||||+|||++|++.|+|+||+|+|+|+||||.+||+ + +.++.|+|++++
T Consensus 167 P~~~ViGLSKl~RiV~~~arRlQiQERLT~qIAdaL~~~L~p~GVaV~ieA~H~Cm~mRGv-----~-~~~s~t~Tsa~~ 240 (259)
T PTZ00484 167 PNKKVLGLSKFARIIEIFSRRLQVQERLTQQIANALQKYLKPMGVAVVIVASHMCMNMRGV-----Q-KHDASTTTSAYL 240 (259)
T ss_pred cCCeEecHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhCCCceEEEEEEEEeeEhhcCe-----e-cCCCeEEEEEeE
Confidence 6899999999999999999999999999999999999999999999999999999999986 3 344899999999
Q ss_pred eeecCCChHHHHHHHHHHh
Q 019706 84 GVFENENADIWSDLLSLLR 102 (337)
Q Consensus 84 G~f~~~~~~~r~efl~li~ 102 (337)
|+|++| +.+|+||++++.
T Consensus 241 G~F~~d-~~~r~Ef~~li~ 258 (259)
T PTZ00484 241 GVFRSD-PKLRAEFFSLIK 258 (259)
T ss_pred eEeCCC-HHHHHHHHHHhc
Confidence 999986 799999999984
No 20
>KOG2698 consensus GTP cyclohydrolase I [Coenzyme transport and metabolism]
Probab=99.97 E-value=1.6e-31 Score=242.51 Aligned_cols=93 Identities=29% Similarity=0.526 Sum_probs=87.4
Q ss_pred CCCeEEecchhhHHHHHHhcCcchHHHHHHHHHHHHHhccCCCeeEEEEEeeeccccccccccCCCCCCCceEEEEeEEE
Q 019706 4 LVNEFWDLSKFSRVAEVFSKRLQNPQRLADEVCSALQHGIKPAGVAVILQCSHLHFPNLESAFLDPNHQGWVKALVSSGA 83 (337)
Q Consensus 4 ~~g~V~GLSKlaRvv~~~ArRlQ~QERLt~qIa~al~~~l~p~GVaV~iea~H~Cm~~~~~~~~~~~~~~~~~t~Ts~~~ 83 (337)
||++|+|||||+|||++|+||||+|||||+|||.+|.+.++|.||+|++||.||||.+||++ +-+ |+|+||++.
T Consensus 154 pnkkvlGlSklarIve~ysrrLQVQERlTkQIA~a~s~~v~p~gVaVV~Ea~HmCMVmRGvq-----K~~-SsTvTs~ml 227 (247)
T KOG2698|consen 154 PNKKVLGLSKLARIVEMYSRRLQVQERLTKQIAVALSQAVQPAGVAVVVEATHMCMVMRGVQ-----KIG-SSTVTSTML 227 (247)
T ss_pred cCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceEEEEecceeeeeeeccc-----ccC-cchhhhhhh
Confidence 89999999999999999999999999999999999999999999999999999999999873 444 899999999
Q ss_pred eeecCCChHHHHHHHHHHhc
Q 019706 84 GVFENENADIWSDLLSLLRF 103 (337)
Q Consensus 84 G~f~~~~~~~r~efl~li~~ 103 (337)
|+|++| +..|+|||.+|+.
T Consensus 228 GvFr~d-~ktReeFl~li~~ 246 (247)
T KOG2698|consen 228 GVFRDD-PKTREEFLNLINS 246 (247)
T ss_pred hhhccC-chhHHHHHHHhcc
Confidence 999986 7899999999964
No 21
>PRK13258 7-cyano-7-deazaguanine reductase; Provisional
Probab=99.87 E-value=6.2e-22 Score=166.89 Aligned_cols=83 Identities=14% Similarity=0.060 Sum_probs=75.6
Q ss_pred CCCCceEEEecceeeecccccccceeeEEEEEEEeCCCCccccchhHHHHHHHHhcchhhHHHHHHHHHHHHHhHc-CCC
Q 019706 205 RSNEHIHSELNLSFWSQCEHHLLPFHGVVHIGYFCAEGLNPIGKSLLQSIVHFYGFKLQVQERLNRQIAETVSSLL-GGD 283 (337)
Q Consensus 205 ~~~~~mViv~~I~f~S~CEHHLLPf~G~~hVaYiP~~~~~viGLSKl~RlV~~~ArRlQlQERLT~qIA~aL~~~l-~~G 283 (337)
.+.+.||.+++|+|+|+||||++|++|+++|+|+|+ .+++|+++|.++++.|++|+|.||++|++||+.|++.+ |+=
T Consensus 12 ~~~~~~V~~~~~ef~S~Cp~tg~Pd~g~~~I~Y~P~--~~iielkSLk~Yl~Sf~~~~~~qE~lt~~I~~dL~~~l~p~~ 89 (114)
T PRK13258 12 PGRDYTIRITLPEFTSLCPKTGQPDFATIVIDYIPD--KKCVELKSLKLYLFSFRNHGIFHEDCTNRILDDLVALLDPRW 89 (114)
T ss_pred CCCceEEEEECCCEEEcCCCCCCCeEEEEEEEEeCC--CCEEcHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHhhCCCE
Confidence 356899999999999999999999999999999996 67999999999999999999999999999999999988 466
Q ss_pred eEEEEE
Q 019706 284 VIVVVE 289 (337)
Q Consensus 284 VaV~i~ 289 (337)
+.|...
T Consensus 90 l~v~~~ 95 (114)
T PRK13258 90 LRVGGD 95 (114)
T ss_pred EEEEEE
Confidence 666544
No 22
>PRK13258 7-cyano-7-deazaguanine reductase; Provisional
Probab=98.71 E-value=2.4e-08 Score=84.53 Aligned_cols=51 Identities=10% Similarity=-0.037 Sum_probs=47.8
Q ss_pred CCCCeEEecchhhHHHHHHhcCcchHHHHHHHHHHHHHhccCCCeeEEEEE
Q 019706 3 QLVNEFWDLSKFSRVAEVFSKRLQNPQRLADEVCSALQHGIKPAGVAVILQ 53 (337)
Q Consensus 3 ~~~g~V~GLSKlaRvv~~~ArRlQ~QERLt~qIa~al~~~l~p~GVaV~ie 53 (337)
+|+++|+|++||.|.++.|++|+|.||++|++|++.|++.++|+-+.|+..
T Consensus 45 ~P~~~iielkSLk~Yl~Sf~~~~~~qE~lt~~I~~dL~~~l~p~~l~v~~~ 95 (114)
T PRK13258 45 IPDKKCVELKSLKLYLFSFRNHGIFHEDCTNRILDDLVALLDPRWLRVGGD 95 (114)
T ss_pred eCCCCEEcHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHhhCCCEEEEEEE
Confidence 478999999999999999999999999999999999999999998887765
No 23
>TIGR03139 QueF-II 7-cyano-7-deazaguanine reductase. The enzymatic step represents the first point at which the biosynthesis of queuosine in bacteria and eukaryotes is distinguished from the biosynthesis of archaeosine in archaea.
Probab=93.84 E-value=0.71 Score=39.51 Aligned_cols=81 Identities=15% Similarity=0.134 Sum_probs=67.3
Q ss_pred CCceEEEecceeeecccccccceeeEEEEEEEeCCCCccccchhHHHHHHHHhcchhhHHHHHHHHHHHHHhHc-CCCeE
Q 019706 207 NEHIHSELNLSFWSQCEHHLLPFHGVVHIGYFCAEGLNPIGKSLLQSIVHFYGFKLQVQERLNRQIAETVSSLL-GGDVI 285 (337)
Q Consensus 207 ~~~mViv~~I~f~S~CEHHLLPf~G~~hVaYiP~~~~~viGLSKl~RlV~~~ArRlQlQERLT~qIA~aL~~~l-~~GVa 285 (337)
.+-.|-+.-=.|.|+|.=.=+|-+|++.|-|+|.+ .++=+=.|...++-|--+---||.++++|++-|.+.+ |+=+.
T Consensus 16 ~~y~i~~~~pEfts~CP~tGqPD~a~i~i~YiP~~--~~vEsKSLKlYLnSfrn~~~~hE~~~~~I~~DL~~~~~P~~l~ 93 (115)
T TIGR03139 16 RDYTIEFVCPEFTSLCPKTGQPDFATIVISYIPDQ--RCVELKSLKLYLFSFRNHGIFHENVTNTILDDLVKLLQPRYLR 93 (115)
T ss_pred CceEEEEeCCceecCCCCCCCCeEEEEEEEEeCCc--cchhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCEEE
Confidence 34466677777999999999999999999999974 4666667888999998888999999999999999988 46565
Q ss_pred EEEE
Q 019706 286 VVVE 289 (337)
Q Consensus 286 V~i~ 289 (337)
|+..
T Consensus 94 V~~~ 97 (115)
T TIGR03139 94 VIGD 97 (115)
T ss_pred EEEE
Confidence 5543
No 24
>cd00651 TFold Tunnelling fold (T-fold). The five known T-folds are found in five different enzymes with different functions: dihydroneopterin-triphosphate epimerase (DHNTPE), dihydroneopterin aldolase (DHNA) , GTP cyclohydrolase I (GTPCH-1), 6-pyrovoyl tetrahydropterin synthetase (PTPS), and uricase (UO,uroate/urate oxidase). They bind to substrates belonging to the purine or pterin families, and share a fold-related binding site with a glutamate or glutamine residue anchoring the substrate and a lot of conserved interactions. They also share a similar oligomerization mode: several T-folds join together to form a beta(2n)alpha(n) barrel, then two barrels join together in a head-to-head fashion to made up the native enzymes. The functional enzyme is a tetramer for UO, a hexamer for PTPS, an octamer for DHNA/DHNTPE and a decamer for GTPCH-1. The substrate is located in a deep and narrow pocket at the interface between monomers. In PTPS, the active site is located at the interface of thr
Probab=93.47 E-value=1.1 Score=36.70 Aligned_cols=102 Identities=16% Similarity=0.024 Sum_probs=68.7
Q ss_pred eEEEecceeeeccc----ccccceeeEEEEEEEeCCCC--------ccccchhHHHHHHHHhcchhhHHHHHHHHHHHHH
Q 019706 210 IHSELNLSFWSQCE----HHLLPFHGVVHIGYFCAEGL--------NPIGKSLLQSIVHFYGFKLQVQERLNRQIAETVS 277 (337)
Q Consensus 210 mViv~~I~f~S~CE----HHLLPf~G~~hVaYiP~~~~--------~viGLSKl~RlV~~~ArRlQlQERLT~qIA~aL~ 277 (337)
.+.++|+.+++.+. +...|-.-.++|-.-.+... .-+--..+.+.+..+..+.+++|.++.+||+.|.
T Consensus 3 ~i~i~~l~~~~~~G~~~~e~~~~q~~~v~v~~~~~~~~~~~~d~l~~~i~y~~v~~~i~~~~~~~~l~E~lae~i~~~i~ 82 (122)
T cd00651 3 GVRVKDLLKVTRLGFVTLERTVGQIFEVDVTLSWDGKKAAASDDVATDTVYNTIYRLAKEYVEGSQLIERLAEEIAYLIA 82 (122)
T ss_pred EEEEEeeEEEEEECCCHHHHhcCCEEEEEEEEEecCchhhccCchhhhCCHHHHHHHHHHHHcccCCHHHHHHHHHHHHH
Confidence 34788888888876 34455444444433222111 1245677888887777666999999999999999
Q ss_pred hHcC---CCeEEEEEeeeeceeecccccCCceEEEee
Q 019706 278 SLLG---GDVIVVVEASHTCMIARGIEKFGSSTATIA 311 (337)
Q Consensus 278 ~~l~---~GVaV~i~A~H~Cm~~RGv~~~~s~t~T~a 311 (337)
+... ..|.|.+...+.|+.+|++.........+.
T Consensus 83 ~~~~~~~~~v~v~v~k~~~~~~~~~~~~~~~~~~~~~ 119 (122)
T cd00651 83 EHFLSSVAEVKVEEKKPHAVIPDRGVFKPTDSPGVTI 119 (122)
T ss_pred HhcccCceEEEEEEeCCCCCCCcccccccCCcEEEEE
Confidence 7543 667788888889998887776655544443
No 25
>COG0780 Enzyme related to GTP cyclohydrolase I [General function prediction only]
Probab=91.59 E-value=0.92 Score=40.44 Aligned_cols=79 Identities=15% Similarity=0.108 Sum_probs=67.5
Q ss_pred eEEEecceeeecccccccceeeEEEEEEEeCCCCccccchhHHHHHHHHhcchhhHHHHHHHHHHHHHhHc-CCCeEEEE
Q 019706 210 IHSELNLSFWSQCEHHLLPFHGVVHIGYFCAEGLNPIGKSLLQSIVHFYGFKLQVQERLNRQIAETVSSLL-GGDVIVVV 288 (337)
Q Consensus 210 mViv~~I~f~S~CEHHLLPf~G~~hVaYiP~~~~~viGLSKl~RlV~~~ArRlQlQERLT~qIA~aL~~~l-~~GVaV~i 288 (337)
.+.+.-=.|.|.|.=-=.|=||+++|-|+|++ .++=+-.|.+.+.-|=-+=-.+|..+.+|++-|.+++ |+=+.|..
T Consensus 41 ~~~l~~~ef~S~CpiTgqPD~~ti~I~Y~p~~--~~ve~ksLk~yl~SFR~h~~fHE~c~~~I~~dl~~~l~P~~l~V~~ 118 (149)
T COG0780 41 LVKLVSPEFKSLCPITGQPDFATIYIEYIPDK--ACVESKSLKLYLFSFRNHGIFHEQCANRIFNDLKALLKPEYLEVYG 118 (149)
T ss_pred EEEEecccceecCCCcCCCCeEEEEEEEcCch--hhhhhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCEEEEEE
Confidence 44445556999999999999999999999975 3678888999999999999999999999999999988 57777776
Q ss_pred Ee
Q 019706 289 EA 290 (337)
Q Consensus 289 ~A 290 (337)
.-
T Consensus 119 ~~ 120 (149)
T COG0780 119 KF 120 (149)
T ss_pred EE
Confidence 63
No 26
>PF14489 QueF: QueF-like protein; PDB: 3UXV_C 3RJB_A 3BP1_D 3RZP_B 3RJ4_A 3UXJ_C 3S19_D 3RZQ_B.
Probab=89.33 E-value=1.2 Score=35.83 Aligned_cols=59 Identities=14% Similarity=0.099 Sum_probs=46.9
Q ss_pred ceeeEEEEEEEeCCCCccccchhHHHHHHHHhcchhhHHHHHHHHHHHHHhHc-CCCeEEEE
Q 019706 228 PFHGVVHIGYFCAEGLNPIGKSLLQSIVHFYGFKLQVQERLNRQIAETVSSLL-GGDVIVVV 288 (337)
Q Consensus 228 Pf~G~~hVaYiP~~~~~viGLSKl~RlV~~~ArRlQlQERLT~qIA~aL~~~l-~~GVaV~i 288 (337)
|=||+++|-|+|++ +.+=+-.|-..+.-|--.---+|.+|++|.+-|.+.+ |+=.-|..
T Consensus 1 PDfati~I~Y~p~~--~~vElkSLk~Yl~SfRn~~~fhE~~v~~I~~Dl~~~~~P~~l~V~~ 60 (80)
T PF14489_consen 1 PDFATIYIRYIPDK--KCVELKSLKLYLWSFRNHGIFHEQCVNRIFDDLVAALKPRYLRVTA 60 (80)
T ss_dssp EEEEEEEEEEEEEE----E-HHHHHHHHHTTTTSBE-HHHHHHHHHHHHHHHH--SEEEEEE
T ss_pred CCeEEEEEEEECCC--cccCHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 55899999999974 5688888999999999999999999999999999987 56555544
No 27
>PRK11792 queF 7-cyano-7-deazaguanine reductase; Provisional
Probab=68.97 E-value=24 Score=34.50 Aligned_cols=76 Identities=18% Similarity=0.163 Sum_probs=63.7
Q ss_pred eeecccccccceeeEEEEEEEeCCCCccccchhHHHHHHHHhcchhhHHHHHHHHHHHHHhHc-CCCeEEEEEeeeecee
Q 019706 218 FWSQCEHHLLPFHGVVHIGYFCAEGLNPIGKSLLQSIVHFYGFKLQVQERLNRQIAETVSSLL-GGDVIVVVEASHTCMI 296 (337)
Q Consensus 218 f~S~CEHHLLPf~G~~hVaYiP~~~~~viGLSKl~RlV~~~ArRlQlQERLT~qIA~aL~~~l-~~GVaV~i~A~H~Cm~ 296 (337)
|.|.|.=-=.|=+|++.|-|+|++ +-+-.|-+.+--|-..---.|..+.+|.+-|++.+ |+-..|... -+
T Consensus 176 l~s~CpvTgqPD~~ti~I~Y~~~~----ie~ksL~~Yl~sfR~h~~FHE~cv~rI~~Dl~~~~~P~~l~V~a~-----yt 246 (273)
T PRK11792 176 LKSNCLVTGQPDWGSVQIRYRGPK----IDREGLLRYLVSFRQHNEFHEQCVERIFTDIMRFCQPEKLTVYAR-----YT 246 (273)
T ss_pred cccCCCCcCCCCeEEEEEEEeCCc----cCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCcEEEEEEE-----EE
Confidence 889999999999999999999964 57778899999999999999999999999999988 577766654 34
Q ss_pred eccccc
Q 019706 297 ARGIEK 302 (337)
Q Consensus 297 ~RGv~~ 302 (337)
-||-=+
T Consensus 247 ~RGGi~ 252 (273)
T PRK11792 247 RRGGLD 252 (273)
T ss_pred CCCCee
Confidence 565433
No 28
>cd00651 TFold Tunnelling fold (T-fold). The five known T-folds are found in five different enzymes with different functions: dihydroneopterin-triphosphate epimerase (DHNTPE), dihydroneopterin aldolase (DHNA) , GTP cyclohydrolase I (GTPCH-1), 6-pyrovoyl tetrahydropterin synthetase (PTPS), and uricase (UO,uroate/urate oxidase). They bind to substrates belonging to the purine or pterin families, and share a fold-related binding site with a glutamate or glutamine residue anchoring the substrate and a lot of conserved interactions. They also share a similar oligomerization mode: several T-folds join together to form a beta(2n)alpha(n) barrel, then two barrels join together in a head-to-head fashion to made up the native enzymes. The functional enzyme is a tetramer for UO, a hexamer for PTPS, an octamer for DHNA/DHNTPE and a decamer for GTPCH-1. The substrate is located in a deep and narrow pocket at the interface between monomers. In PTPS, the active site is located at the interface of thr
Probab=65.06 E-value=15 Score=29.83 Aligned_cols=53 Identities=23% Similarity=0.241 Sum_probs=41.8
Q ss_pred cchhhHHHHHHhcCcchHHHHHHHHHHHHHhccC--CCeeEEEEEeeeccccccc
Q 019706 11 LSKFSRVAEVFSKRLQNPQRLADEVCSALQHGIK--PAGVAVILQCSHLHFPNLE 63 (337)
Q Consensus 11 LSKlaRvv~~~ArRlQ~QERLt~qIa~al~~~l~--p~GVaV~iea~H~Cm~~~~ 63 (337)
-..+.+.+.-+..+.+++|.++.+||+.|.+... ...|.|.++-.+.|+..++
T Consensus 53 y~~v~~~i~~~~~~~~l~E~lae~i~~~i~~~~~~~~~~v~v~v~k~~~~~~~~~ 107 (122)
T cd00651 53 YNTIYRLAKEYVEGSQLIERLAEEIAYLIAEHFLSSVAEVKVEEKKPHAVIPDRG 107 (122)
T ss_pred HHHHHHHHHHHHcccCCHHHHHHHHHHHHHHhcccCceEEEEEEeCCCCCCCccc
Confidence 4567777666665559999999999999999876 6788888888888886433
No 29
>PF08879 WRC: WRC; InterPro: IPR014977 WRC is named after the conserved Trp-Arg-Cys motif, it contains two distinctive features: a putative nuclear localisation signal and a zinc-finger motif (C3H). It is suggested that WRC functions in DNA binding []. ; GO: 0005515 protein binding
Probab=58.51 E-value=1.9 Score=31.20 Aligned_cols=11 Identities=55% Similarity=0.818 Sum_probs=8.7
Q ss_pred eeeeccccccc
Q 019706 217 SFWSQCEHHLL 227 (337)
Q Consensus 217 ~f~S~CEHHLL 227 (337)
+=+|+||||+.
T Consensus 23 ~g~~~Ce~H~~ 33 (46)
T PF08879_consen 23 PGYSLCEHHLD 33 (46)
T ss_pred CCccHHHHHHH
Confidence 34699999985
No 30
>TIGR03138 QueF 7-cyano-7-deazaguanine reductase. The enzymatic step represents the first point at which the biosynthesis of queuosine in bacteria and eukaryotes is distinguished from the biosynthesis of archaeosine in archaea.
Probab=52.80 E-value=70 Score=31.35 Aligned_cols=68 Identities=18% Similarity=0.190 Sum_probs=57.5
Q ss_pred eeecccccccceeeEEEEEEEeCCCCccccchhHHHHHHHHhcchhhHHHHHHHHHHHHHhHc-CCCeEEEEE
Q 019706 218 FWSQCEHHLLPFHGVVHIGYFCAEGLNPIGKSLLQSIVHFYGFKLQVQERLNRQIAETVSSLL-GGDVIVVVE 289 (337)
Q Consensus 218 f~S~CEHHLLPf~G~~hVaYiP~~~~~viGLSKl~RlV~~~ArRlQlQERLT~qIA~aL~~~l-~~GVaV~i~ 289 (337)
+.|.|.=-=.|=+|++.|-|+|++ +-+-.|-+.+--|--.---.|..+.+|.+-|++.+ |+-..|...
T Consensus 178 L~S~CPvTGQPD~gti~I~Y~g~~----~~~esLk~Yl~SFR~h~~FHE~cverI~~Dl~~~~~P~~L~V~a~ 246 (275)
T TIGR03138 178 LKSNCPVTGQPDWGSVQIRYRGKK----IDREALLRYLISFRQHNEFHEQCVERIFADIMRFCQPEKLTVYAR 246 (275)
T ss_pred cccCCCCCCCCCeEEEEEEEeCCc----ccHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhcCCcEEEEEEE
Confidence 678888888999999999999964 33556889999999999999999999999999988 576666554
No 31
>PF14489 QueF: QueF-like protein; PDB: 3UXV_C 3RJB_A 3BP1_D 3RZP_B 3RJ4_A 3UXJ_C 3S19_D 3RZQ_B.
Probab=38.04 E-value=41 Score=27.00 Aligned_cols=49 Identities=12% Similarity=0.100 Sum_probs=33.7
Q ss_pred CCeEEecchhhHHHHHHhcCcchHHHHHHHHHHHHHhccCCCeeEEEEE
Q 019706 5 VNEFWDLSKFSRVAEVFSKRLQNPQRLADEVCSALQHGIKPAGVAVILQ 53 (337)
Q Consensus 5 ~g~V~GLSKlaRvv~~~ArRlQ~QERLt~qIa~al~~~l~p~GVaV~ie 53 (337)
+.+.+=|-.|-.-+.-|--.---+|.+|++|.+.|.+.++|+-..|...
T Consensus 13 ~~~~vElkSLk~Yl~SfRn~~~fhE~~v~~I~~Dl~~~~~P~~l~V~~~ 61 (80)
T PF14489_consen 13 DKKCVELKSLKLYLWSFRNHGIFHEQCVNRIFDDLVAALKPRYLRVTAD 61 (80)
T ss_dssp EE--E-HHHHHHHHHTTTTSBE-HHHHHHHHHHHHHHHH--SEEEEEEE
T ss_pred CCcccCHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHhCCCCEEEEEEE
Confidence 3445555566666666767777899999999999999999988777654
No 32
>PF07809 RTP801_C: RTP801 C-terminal region; InterPro: IPR012918 The members of this family are sequences similar to the C-terminal region of RTP801, the protein product of a hypoxia-inducible factor 1 (HIF-1)- responsive gene []. Two members of this family expressed by Drosophila melanogaster, Scylla (Q9NHN4 from SWISSPROT) and Charybde (Q9NHN5 from SWISSPROT), are designated as Hox targets []. RTP801 is thought to be involved in various cellular processes []. Over expression of the gene caused the apoptosis-resistant phenotype in cycling cells, and apoptosis sensitivity in growth arrested cells []. Moreover, the protein product of the mouse homologue of RTP801 (dig2 (Q9D3F7 from SWISSPROT)) is thought to be induced by diverse apoptotic signals, and also by dexamethasone treatment []. ; GO: 0009968 negative regulation of signal transduction, 0005737 cytoplasm; PDB: 3LQ9_A.
Probab=34.58 E-value=81 Score=27.16 Aligned_cols=72 Identities=19% Similarity=0.172 Sum_probs=38.5
Q ss_pred cchhhHHHHHHHHHHHHHhHc---C---CCeEE--EEEee-eeceeecccccCCceEEEeeeeeeecCChHHHHHHHHcc
Q 019706 260 FKLQVQERLNRQIAETVSSLL---G---GDVIV--VVEAS-HTCMIARGIEKFGSSTATIAVLGRFSTDHSARAMFLQNI 330 (337)
Q Consensus 260 rRlQlQERLT~qIA~aL~~~l---~---~GVaV--~i~A~-H~Cm~~RGv~~~~s~t~T~a~~G~F~~~~~~r~Efl~li 330 (337)
.++=+.|.||+.||..+-.+. | +|..| .+|.. ..|...--+.-.-+.+.|....=.|+-|+..|.-+..+.
T Consensus 12 ~~vLlP~~L~~~Ia~dvL~ls~~EPCGlRGc~i~v~~E~~~~~~~~l~~i~~Dp~~vpTFEL~Lvlr~d~~~W~~l~~~F 91 (116)
T PF07809_consen 12 SEVLLPEDLTRRIARDVLRLSESEPCGLRGCLIDVCFEDEPDNCRRLGQIKVDPSTVPTFELTLVLRQDSSGWPSLRPLF 91 (116)
T ss_dssp E-EE--HHHHHHHHHHHHHHHTTSTTGGGGEEEEEEEEET-TEEEEEEEEES-TTS---EEEEEEEE--TT-------S-
T ss_pred ceEEchHHHHHHHHHHHHHhhcCCCCcceeeEEEEEEccccchheeeccEecCCCCCCcEEEEEEEeeCCCCCHhHHHHh
Confidence 356688999999999987542 2 67554 45665 677776556555667788888888887777776665554
Q ss_pred C
Q 019706 331 P 331 (337)
Q Consensus 331 ~ 331 (337)
.
T Consensus 92 ~ 92 (116)
T PF07809_consen 92 L 92 (116)
T ss_dssp -
T ss_pred c
Confidence 3
No 33
>KOG3203 consensus Mitochondrial/chloroplast ribosomal protein L13 [Translation, ribosomal structure and biogenesis]
Probab=34.05 E-value=42 Score=30.37 Aligned_cols=50 Identities=30% Similarity=0.492 Sum_probs=39.7
Q ss_pred hhHHHHHHhcCcchHHHHHHHHHHHHHhccCC--------CeeEEEEEeeeccccccc
Q 019706 14 FSRVAEVFSKRLQNPQRLADEVCSALQHGIKP--------AGVAVILQCSHLHFPNLE 63 (337)
Q Consensus 14 laRvv~~~ArRlQ~QERLt~qIa~al~~~l~p--------~GVaV~iea~H~Cm~~~~ 63 (337)
++|+=.++..+-|.-+||+.+||..|+-.=+| -+.-||+.|++.-|+++.
T Consensus 19 faRvW~vvDa~~q~lGrLAs~ia~~L~GkhKPiYhP~~DcGD~VVV~N~~~Ia~sG~K 76 (165)
T KOG3203|consen 19 FARVWHVVDAKQQPLGRLASQIATTLQGKHKPIYHPSTDCGDHVVVTNCKKIAFSGKK 76 (165)
T ss_pred HhhhheeeccccCchHHHHHHHHHHHhhccCCccCCccCCCCEEEEecchhheeccch
Confidence 45777777778899999999999999976554 466777789998888643
No 34
>PRK11593 folB bifunctional dihydroneopterin aldolase/dihydroneopterin triphosphate 2'-epimerase; Provisional
Probab=32.45 E-value=1.2e+02 Score=25.27 Aligned_cols=47 Identities=17% Similarity=0.148 Sum_probs=33.2
Q ss_pred chhhHHHHHHh--cCcchHHHHHHHHHHHHHhccCCCeeEEEEEeeecc
Q 019706 12 SKFSRVAEVFS--KRLQNPQRLADEVCSALQHGIKPAGVAVILQCSHLH 58 (337)
Q Consensus 12 SKlaRvv~~~A--rRlQ~QERLt~qIa~al~~~l~p~GVaV~iea~H~C 58 (337)
+.+...+.-++ .+.++.|.|+..||+.|.+......|-|-++--+..
T Consensus 54 ~~v~~~I~~~~~~~~~~LlE~la~~ia~~i~~~~~~~~v~v~v~Kp~a~ 102 (119)
T PRK11593 54 ADIAETVISHVEGARFALVERVAEEVAELLLARFNSPWVRIKLSKPGAV 102 (119)
T ss_pred HHHHHHHHHHHhCCCcccHHHHHHHHHHHHHhhCCCcEEEEEEECCCCC
Confidence 44555554433 578999999999999999887666666666544444
No 35
>PRK11245 folX D-erythro-7,8-dihydroneopterin triphosphate 2'-epimerase; Provisional
Probab=31.70 E-value=1.1e+02 Score=25.69 Aligned_cols=46 Identities=11% Similarity=0.101 Sum_probs=31.4
Q ss_pred chhhHHH-HHHh-cCcchHHHHHHHHHHHHHhccCCCeeEEEEEeeec
Q 019706 12 SKFSRVA-EVFS-KRLQNPQRLADEVCSALQHGIKPAGVAVILQCSHL 57 (337)
Q Consensus 12 SKlaRvv-~~~A-rRlQ~QERLt~qIa~al~~~l~p~GVaV~iea~H~ 57 (337)
+.+.+.+ +.+. ++.++.|.|+.+||+.+.+.-+..-|-|.+.=-+.
T Consensus 58 ~~v~~~i~~~v~~~~~~llE~la~~Ia~~i~~~~~v~~v~v~v~Kp~a 105 (120)
T PRK11245 58 RTITKNIIQHVENNRFSLLEKLTQDVLDIAREHPWVTYAEVEIDKPHA 105 (120)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHHHccCCccEEEEEEECCCC
Confidence 4455544 5454 68999999999999999886444555555554333
No 36
>TIGR00525 folB dihydroneopterin aldolase. This model describes a bacterial dihydroneopterin aldolase, shown to form homo-octamers in E. coli. The equivalent activity is catalyzed by domains of larger folate biosynthesis proteins in other systems. The closely related parologous enzyme in E. coli, dihydroneopterin triphosphate epimerase, which is also homo-octameric, and dihydroneopterin aldolase domains of larger proteins, score below the trusted cutoff but may score well above the noise cutoff.
Probab=26.18 E-value=1.6e+02 Score=24.21 Aligned_cols=46 Identities=13% Similarity=0.071 Sum_probs=31.7
Q ss_pred cchhhHHHHH-Hh-cCcchHHHHHHHHHHHHHhccC-CCeeEEEEEeee
Q 019706 11 LSKFSRVAEV-FS-KRLQNPQRLADEVCSALQHGIK-PAGVAVILQCSH 56 (337)
Q Consensus 11 LSKlaRvv~~-~A-rRlQ~QERLt~qIa~al~~~l~-p~GVaV~iea~H 56 (337)
-+.+.+.+.- +. .+..+.|.|+.+||+.|...-. ..-|-|.++--+
T Consensus 52 Y~~v~~~i~~~~~~~~~~llE~la~~Ia~~i~~~~~~v~~v~v~i~Kp~ 100 (116)
T TIGR00525 52 YAELYSAIEEIVAEKPRDLIETVAYRIADRLFADFPQVQRVKVRVSKPN 100 (116)
T ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHCCCceEEEEEEEeCC
Confidence 3455555533 33 4889999999999999998754 555666665444
No 37
>TIGR00525 folB dihydroneopterin aldolase. This model describes a bacterial dihydroneopterin aldolase, shown to form homo-octamers in E. coli. The equivalent activity is catalyzed by domains of larger folate biosynthesis proteins in other systems. The closely related parologous enzyme in E. coli, dihydroneopterin triphosphate epimerase, which is also homo-octameric, and dihydroneopterin aldolase domains of larger proteins, score below the trusted cutoff but may score well above the noise cutoff.
Probab=25.82 E-value=2.3e+02 Score=23.30 Aligned_cols=42 Identities=19% Similarity=0.074 Sum_probs=29.2
Q ss_pred chhHHHHHHHH-h-cchhhHHHHHHHHHHHHHhHcC--CCeEEEEE
Q 019706 248 KSLLQSIVHFY-G-FKLQVQERLNRQIAETVSSLLG--GDVIVVVE 289 (337)
Q Consensus 248 LSKl~RlV~~~-A-rRlQlQERLT~qIA~aL~~~l~--~GVaV~i~ 289 (337)
-..+.+.+.-+ . .+..+.|.|+.+||+.|....+ ..|-|.+.
T Consensus 52 Y~~v~~~i~~~~~~~~~~llE~la~~Ia~~i~~~~~~v~~v~v~i~ 97 (116)
T TIGR00525 52 YAELYSAIEEIVAEKPRDLIETVAYRIADRLFADFPQVQRVKVRVS 97 (116)
T ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHCCCceEEEEEEE
Confidence 34555555443 3 4889999999999999987655 44555544
No 38
>TIGR00526 folB_dom FolB domain. Two paralogous genes of E. coli, folB (dihydroneopterin aldolase) and folX (d-erythro-7,8-dihydroneopterin triphosphate epimerase) are homologous to each other and homo-octameric. In Pneumocystis carinii, a multifunctional enzyme of folate synthesis has an N-terminal region active as dihydroneopterin aldolase. This region consists of two tandem sequences each homologous to folB and forms tetramers.
Probab=25.20 E-value=1.9e+02 Score=23.91 Aligned_cols=45 Identities=13% Similarity=0.147 Sum_probs=33.5
Q ss_pred chhhHHHHHHh--cCcchHHHHHHHHHHHHHhcc-CCCeeEEEEEeee
Q 019706 12 SKFSRVAEVFS--KRLQNPQRLADEVCSALQHGI-KPAGVAVILQCSH 56 (337)
Q Consensus 12 SKlaRvv~~~A--rRlQ~QERLt~qIa~al~~~l-~p~GVaV~iea~H 56 (337)
+.+.+.+.-++ .+.++.|.|+..||+.|.... ....|-|.++=-+
T Consensus 54 ~~l~~~i~~~~~~~~~~llE~la~~ia~~i~~~~~~v~~v~v~v~Kp~ 101 (118)
T TIGR00526 54 AEIASNITKFVEENPFKLIETLAKSVSEVVLDDYQKVTEVELEVSKPK 101 (118)
T ss_pred HHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhCCCceEEEEEEECCc
Confidence 44556554333 578999999999999999886 5567777776666
No 39
>PRK11593 folB bifunctional dihydroneopterin aldolase/dihydroneopterin triphosphate 2'-epimerase; Provisional
Probab=24.27 E-value=1.8e+02 Score=24.24 Aligned_cols=48 Identities=13% Similarity=0.068 Sum_probs=33.9
Q ss_pred chhHHHHHHHHh--cchhhHHHHHHHHHHHHHhHcC-CCeEEEEEeeeece
Q 019706 248 KSLLQSIVHFYG--FKLQVQERLNRQIAETVSSLLG-GDVIVVVEASHTCM 295 (337)
Q Consensus 248 LSKl~RlV~~~A--rRlQlQERLT~qIA~aL~~~l~-~GVaV~i~A~H~Cm 295 (337)
-+.+...+.-++ .+.++.|.|+..||+.|.+-.+ ..|-|.++--+...
T Consensus 53 Y~~v~~~I~~~~~~~~~~LlE~la~~ia~~i~~~~~~~~v~v~v~Kp~a~~ 103 (119)
T PRK11593 53 YADIAETVISHVEGARFALVERVAEEVAELLLARFNSPWVRIKLSKPGAVA 103 (119)
T ss_pred HHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHhhCCCcEEEEEEECCCCCC
Confidence 345566654443 5789999999999999986555 66777766555553
No 40
>cd00392 Ribosomal_L13 Ribosomal protein L13. Protein L13, a large ribosomal subunit protein, is one of five proteins required for an early folding intermediate of 23S rRNA in the assembly of the large subunit. L13 is situated on the bottom of the large subunit, near the polypeptide exit site. It interacts with proteins L3 and L6, and forms an extensive network of interactions with 23S rRNA. L13 has been identified as a homolog of the human breast basic conserved protein 1 (BBC1), a protein identified through its increased expression in breast cancer. L13 expression is also upregulated in a variety of human gastrointestinal cancers, suggesting it may play a role in the etiology of a variety of human malignancies.
Probab=23.56 E-value=1.1e+02 Score=26.00 Aligned_cols=39 Identities=18% Similarity=0.186 Sum_probs=31.0
Q ss_pred CcchHHHHHHHHHHHHHhc--------cCCCeeEEEEEeeecccccc
Q 019706 24 RLQNPQRLADEVCSALQHG--------IKPAGVAVILQCSHLHFPNL 62 (337)
Q Consensus 24 RlQ~QERLt~qIa~al~~~--------l~p~GVaV~iea~H~Cm~~~ 62 (337)
+=|+--||+..||..|+.. .+.-.--|+|.|++..++|.
T Consensus 7 ~~~~lGRlAs~iA~~L~gKhKp~y~p~~d~Gd~VvViNa~~i~~tG~ 53 (114)
T cd00392 7 KGQVLGRLASKVAKLLLGKHKPTYTPHVDCGDYVVVVNAEKIVITGK 53 (114)
T ss_pred CCCchHHHHHHHHHHHcCCCCCCcCCCccCCCEEEEEeccEEEEeCc
Confidence 3477789999999999973 34456678889999999974
No 41
>COG1539 FolB Dihydroneopterin aldolase [Coenzyme metabolism]
Probab=21.85 E-value=1.5e+02 Score=25.44 Aligned_cols=36 Identities=19% Similarity=0.215 Sum_probs=26.7
Q ss_pred hcCcchHHHHHHHHHHHHHhccCCCeeE-EEEEeeec
Q 019706 22 SKRLQNPQRLADEVCSALQHGIKPAGVA-VILQCSHL 57 (337)
Q Consensus 22 ArRlQ~QERLt~qIa~al~~~l~p~GVa-V~iea~H~ 57 (337)
.++..+.|+|+.+||+.|.+.-..-... |.+.-.+-
T Consensus 67 ~~~~~LiE~lA~~ia~~l~~~~~~v~~~~v~v~KP~a 103 (121)
T COG1539 67 GKRFALIETLAEEIADLLLARFPRVELVEVKVTKPKA 103 (121)
T ss_pred CCccchHHHHHHHHHHHHHhhCCccEEEEEEEECCCC
Confidence 3578999999999999999987444444 66554444
No 42
>COG0780 Enzyme related to GTP cyclohydrolase I [General function prediction only]
Probab=21.45 E-value=2.1e+02 Score=25.64 Aligned_cols=52 Identities=12% Similarity=0.043 Sum_probs=43.9
Q ss_pred CCeEEecchhhHHHHHHhcCcchHHHHHHHHHHHHHhccCCCeeEEEEEeee
Q 019706 5 VNEFWDLSKFSRVAEVFSKRLQNPQRLADEVCSALQHGIKPAGVAVILQCSH 56 (337)
Q Consensus 5 ~g~V~GLSKlaRvv~~~ArRlQ~QERLt~qIa~al~~~l~p~GVaV~iea~H 56 (337)
.+.++=+=.|.+-+.-|=.+=-.+|..+++|++.|.+.++|+=+.|...-.+
T Consensus 71 ~~~~ve~ksLk~yl~SFR~h~~fHE~c~~~I~~dl~~~l~P~~l~V~~~~~p 122 (149)
T COG0780 71 DKACVESKSLKLYLFSFRNHGIFHEQCANRIFNDLKALLKPEYLEVYGKFTP 122 (149)
T ss_pred chhhhhhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCEEEEEEEEec
Confidence 3445667778888888888889999999999999999999999988877543
No 43
>PF02662 FlpD: Methyl-viologen-reducing hydrogenase, delta subunit; InterPro: IPR003813 Methyl-viologen-reducing hydrogenase (MVH) is one of the enzymes involved in methanogenesis and coded in the mth-flp-mvh-mrt cluster of methane genes in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) []. No specific functions have been assigned to the delta subunit.; GO: 0015948 methanogenesis, 0055114 oxidation-reduction process
Probab=21.00 E-value=1.5e+02 Score=25.27 Aligned_cols=37 Identities=27% Similarity=0.441 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHhCCCCCCccc----cCchHHHHHHHHHh
Q 019706 141 QGMVAAVVSILRSLGEDPLREEL----LGTPRRFVKWLMNF 177 (337)
Q Consensus 141 ~~~e~avr~lL~alGeDp~regL----~~TP~RVak~~~e~ 177 (337)
.+-.+.++++|+.+|.||+|=.+ ..-+.++++...+|
T Consensus 76 ~~Rv~~~k~~L~~~Gi~~eRv~~~~~~~~~~~~fa~~~~~f 116 (124)
T PF02662_consen 76 EKRVERLKKLLEELGIEPERVRLYWISAPEGKRFAEIVNEF 116 (124)
T ss_pred HHHHHHHHHHHHHcCCChhHeEEEEeCcccHHHHHHHHHHH
Confidence 34556788899999999999887 56678888877776
No 44
>PRK11245 folX D-erythro-7,8-dihydroneopterin triphosphate 2'-epimerase; Provisional
Probab=20.95 E-value=2.1e+02 Score=23.96 Aligned_cols=47 Identities=9% Similarity=0.114 Sum_probs=32.0
Q ss_pred chhHHHHH-HHHh-cchhhHHHHHHHHHHHHHhHcC-CCeEEEEEeeeec
Q 019706 248 KSLLQSIV-HFYG-FKLQVQERLNRQIAETVSSLLG-GDVIVVVEASHTC 294 (337)
Q Consensus 248 LSKl~RlV-~~~A-rRlQlQERLT~qIA~aL~~~l~-~GVaV~i~A~H~C 294 (337)
-+.+.+.+ ++.. .+.++.|.|+.+||+.|....+ ..|-|.+.=-+.+
T Consensus 57 Y~~v~~~i~~~v~~~~~~llE~la~~Ia~~i~~~~~v~~v~v~v~Kp~a~ 106 (120)
T PRK11245 57 YRTITKNIIQHVENNRFSLLEKLTQDVLDIAREHPWVTYAEVEIDKPHAL 106 (120)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHccCCccEEEEEEECCCCC
Confidence 44555544 4454 5899999999999998876433 5566666544444
No 45
>TIGR01077 L13_A_E ribosomal protein L13, archaeal/eukaryotic. This model represents ribosomal protein of L13 from the Archaea and from the eukaryotic cytosol. Bacterial and organellar forms are represented by TIGR01066.
Probab=20.40 E-value=1.1e+02 Score=27.02 Aligned_cols=35 Identities=17% Similarity=0.131 Sum_probs=27.4
Q ss_pred CcchHHHHHHHHHHHHHhccCCCeeEEEEEeeecccccc
Q 019706 24 RLQNPQRLADEVCSALQHGIKPAGVAVILQCSHLHFPNL 62 (337)
Q Consensus 24 RlQ~QERLt~qIa~al~~~l~p~GVaV~iea~H~Cm~~~ 62 (337)
+=|+--||+.+||..|. .-.--|||.|+|..++|.
T Consensus 6 ~~~vlGRLAs~IA~~L~----~Gd~VvViNaeki~~TG~ 40 (142)
T TIGR01077 6 SGHILGRLASVVAKQLL----NGEKVVVVNAEKIVISGN 40 (142)
T ss_pred CCCchHHHHHHHHHHHh----cCCEEEEEechHheecCc
Confidence 34677899999999885 445567779999999974
No 46
>PF07862 Nif11: Nitrogen fixation protein of unknown function; InterPro: IPR012903 This domain is found in the cyanobacteria, and the nitrogen-fixing proteobacterium Azotobacter vinelandii and may be involved in nitrogen fixation, but no role has been assigned [].
Probab=20.27 E-value=62 Score=22.77 Aligned_cols=40 Identities=25% Similarity=0.445 Sum_probs=27.7
Q ss_pred HHHHHHHHHhCCCCC-CccccC--chHHHHHHHHHhhccchhhhccCcccCcc
Q 019706 145 AAVVSILRSLGEDPL-REELLG--TPRRFVKWLMNFENSIIDMKLNGFAFGRM 194 (337)
Q Consensus 145 ~avr~lL~alGeDp~-regL~~--TP~RVak~~~e~~~~~~~~~~~g~~~~~~ 194 (337)
+.+..+|..+..||+ |+.|.. ||.-+++.-.+. ||.|++.
T Consensus 4 ~~l~~Fl~~~~~d~~l~~~l~~~~~~~e~~~lA~~~----------Gy~ft~~ 46 (49)
T PF07862_consen 4 ESLKAFLEKVKSDPELREQLKACQNPEEVVALAREA----------GYDFTEE 46 (49)
T ss_pred HHHHHHHHHHhcCHHHHHHHHhcCCHHHHHHHHHHc----------CCCCCHH
Confidence 467888999988886 555654 788887754443 7777543
Done!