BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019707
(337 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1IVH|A Chain A, Structure Of Human Isovaleryl-coa Dehydrogenase At 2.6
Angstroms Resolution: Structural Basis For Substrate
Specificity
pdb|1IVH|B Chain B, Structure Of Human Isovaleryl-coa Dehydrogenase At 2.6
Angstroms Resolution: Structural Basis For Substrate
Specificity
pdb|1IVH|C Chain C, Structure Of Human Isovaleryl-coa Dehydrogenase At 2.6
Angstroms Resolution: Structural Basis For Substrate
Specificity
pdb|1IVH|D Chain D, Structure Of Human Isovaleryl-coa Dehydrogenase At 2.6
Angstroms Resolution: Structural Basis For Substrate
Specificity
Length = 394
Score = 470 bits (1210), Expect = e-133, Method: Compositional matrix adjust.
Identities = 226/335 (67%), Positives = 267/335 (79%), Gaps = 2/335 (0%)
Query: 1 MGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSP 60
+GN + GITAP + H + MEEISRASG+VGLSYGAHSNLCINQLVR+G+
Sbjct: 55 LGNLGVLGITAPVQYGGSGLGYLEHVLVMEEISRASGAVGLSYGAHSNLCINQLVRNGNE 114
Query: 61 AQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQ 120
AQK+KYLPKLISGE++GALAMSEPNAGSDVV MK KA++ YI+NGNK W TNGP A
Sbjct: 115 AQKEKYLPKLISGEYIGALAMSEPNAGSDVVSMKLKAEKKGNHYILNGNKFWITNGPDAD 174
Query: 121 TLVVYAKTDIKA--GSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNE 178
L+VYAKTD+ A S+GITAFI+EKGMPGFST++KLDKLGMRGS+TCEL+FE+C +P
Sbjct: 175 VLIVYAKTDLAAVPASRGITAFIVEKGMPGFSTSKKLDKLGMRGSNTCELIFEDCKIPAA 234
Query: 179 NVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQ 238
N+LG E KGVYV+MSGLDLERLVLA GPLG+MQA LD +PY+ RE FG+ +G FQ +Q
Sbjct: 235 NILGHENKGVYVLMSGLDLERLVLAGGPLGLMQAVLDHTIPYLHVREAFGQKIGHFQLMQ 294
Query: 239 GKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVTLQAIQCLGGNG 298
GK ADMYT L + R YVY+VA+ CD G KDCAGVIL +AE ATQV L IQC GGNG
Sbjct: 295 GKMADMYTRLMACRQYVYNVAKACDEGHCTAKDCAGVILYSAECATQVALDGIQCFGGNG 354
Query: 299 YVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRAL 333
Y+N++ GR LRDAKLYEIGAGTSE+RR++IGRA
Sbjct: 355 YINDFPMGRFLRDAKLYEIGAGTSEVRRLVIGRAF 389
>pdb|1BUC|A Chain A, Three-Dimensional Structure Of Butyryl-Coa Dehydrogenase
From Megasphaera Elsdenii
pdb|1BUC|B Chain B, Three-Dimensional Structure Of Butyryl-Coa Dehydrogenase
From Megasphaera Elsdenii
Length = 383
Score = 251 bits (640), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 132/312 (42%), Positives = 195/312 (62%), Gaps = 1/312 (0%)
Query: 25 HCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEP 84
+ +A+EE+++ V ++ A +LC N + + G+ AQK+K+L L+ G +GA ++EP
Sbjct: 72 YILAVEELAKYDAGVAITLSATVSLCANPIWQFGTEAQKEKFLVPLVEGTKLGAFGLTEP 131
Query: 85 NAGSDVVGMKCKADRVDGG-YIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIE 143
NAG+D G + A + D G Y +NG+K++ TNG A +V+A TD G+ GITAFI+E
Sbjct: 132 NAGTDASGQQTIATKNDDGTYTLNGSKIFITNGGAADIYIVFAMTDKSKGNHGITAFILE 191
Query: 144 KGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLA 203
G PGF+ +K DK+G+ S T ELVF++ VP EN+LG+EGKG + M LD R+ +A
Sbjct: 192 DGTPGFTYGKKEDKMGIHTSQTMELVFQDVKVPAENMLGEEGKGFKIAMMTLDGGRIGVA 251
Query: 204 AGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCD 263
A LGI +A L + Y +QR QFG+PL +FQ I K ADM ++++R+ VY A
Sbjct: 252 AQALGIAEAALADAVEYSKQRVQFGKPLCKFQSISFKLADMKMQIEAARNLVYKAACKKQ 311
Query: 264 NGKVDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSE 323
GK D A A++ A +VT +A+Q GG GY EY R +RDAK+ +I GT+E
Sbjct: 312 EGKPFTVDAAIAKRVASDVAMRVTTEAVQIFGGYGYSEEYPVARHMRDAKITQIYEGTNE 371
Query: 324 IRRMIIGRALLK 335
++ M+ G ALL+
Sbjct: 372 VQLMVTGGALLR 383
>pdb|1JQI|A Chain A, Crystal Structure Of Rat Short Chain Acyl-Coa
Dehydrogenase Complexed With Acetoacetyl-Coa
pdb|1JQI|B Chain B, Crystal Structure Of Rat Short Chain Acyl-Coa
Dehydrogenase Complexed With Acetoacetyl-Coa
Length = 388
Score = 249 bits (637), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 133/335 (39%), Positives = 188/335 (56%)
Query: 1 MGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSP 60
MG L + P+E + IA+EEISR S G+ +++L + +++ GS
Sbjct: 50 MGELGLLAMDVPEELSGAGLDYLAYSIALEEISRGCASTGVIMSVNNSLYLGPILKFGSS 109
Query: 61 AQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQ 120
QK +++ +G+ +G A+SEP GSD A +++NG K W TN A
Sbjct: 110 QQKQQWITPFTNGDKIGCFALSEPGNGSDAGAASTTAREEGDSWVLNGTKAWITNSWEAS 169
Query: 121 TLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENV 180
VV+A TD +KGI+AF++ PG + +K DKLG+R S T L+FE+C +P EN+
Sbjct: 170 ATVVFASTDRSRQNKGISAFLVPMPTPGLTLGKKEDKLGIRASSTANLIFEDCRIPKENL 229
Query: 181 LGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGK 240
LG+ G G + M LD+ R+ +A+ LGI QA LD + Y R FG PL + Q IQ K
Sbjct: 230 LGEPGMGFKIAMQTLDMGRIGIASQALGIAQASLDCAVKYAENRHAFGAPLTKLQNIQFK 289
Query: 241 TADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVTLQAIQCLGGNGYV 300
ADM AL+S+R + A DN K K+ A L A+E AT ++ QAIQ LGG GYV
Sbjct: 290 LADMALALESARLLTWRAAMLKDNKKPFTKESAMAKLAASEAATAISHQAIQILGGMGYV 349
Query: 301 NEYATGRLLRDAKLYEIGAGTSEIRRMIIGRALLK 335
E R RDA++ EI GTSEI+R++I LL+
Sbjct: 350 TEMPAERYYRDARITEIYEGTSEIQRLVIAGHLLR 384
>pdb|2VIG|A Chain A, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|B Chain B, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|C Chain C, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|D Chain D, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|E Chain E, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|F Chain F, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|G Chain G, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|H Chain H, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
Length = 391
Score = 243 bits (621), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 134/336 (39%), Positives = 189/336 (56%), Gaps = 2/336 (0%)
Query: 1 MGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSP 60
MG L + P+E + IAMEEISR S G+ +++L + +++ GS
Sbjct: 46 MGGLGLLAMDVPEELGGAGLDYLAYAIAMEEISRGCASTGVIMSVNNSLYLGPILKFGSK 105
Query: 61 AQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDG-GYIINGNKMWCTNGPVA 119
QK ++ SG+ +G A+SEP GSD G R +G +++NG K W TN A
Sbjct: 106 EQKQAWVTPFTSGDKIGCFALSEPGNGSDA-GAASTTARAEGDSWVLNGTKAWITNAWEA 164
Query: 120 QTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNEN 179
VV+A TD +K I+AF++ PG + +K DKLG+RGS T L+FE+C +P ++
Sbjct: 165 SAAVVFASTDRALQNKSISAFLVPMPTPGLTLGKKEDKLGIRGSSTANLIFEDCRIPKDS 224
Query: 180 VLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQG 239
+LG+ G G + M LD+ R+ +A+ LGI Q LD + Y R FG PL + Q IQ
Sbjct: 225 ILGEPGMGFKIAMQTLDMGRIGIASQALGIAQTALDCAVNYAENRMAFGAPLTKLQVIQF 284
Query: 240 KTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVTLQAIQCLGGNGY 299
K ADM AL+S+R + A DN K K+ A L A+E AT ++ QAIQ LGG GY
Sbjct: 285 KLADMALALESARLLTWRAAMLKDNKKPFIKEAAMAKLAASEAATAISHQAIQILGGMGY 344
Query: 300 VNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRALLK 335
V E R RDA++ EI GTSEI+R++I LL+
Sbjct: 345 VTEMPAERHYRDARITEIYEGTSEIQRLVIAGHLLR 380
>pdb|2DVL|A Chain A, Crystal Structure Of Project Tt0160 From Thermus
Thermophilus Hb8
pdb|2DVL|B Chain B, Crystal Structure Of Project Tt0160 From Thermus
Thermophilus Hb8
Length = 372
Score = 228 bits (580), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 131/335 (39%), Positives = 194/335 (57%), Gaps = 5/335 (1%)
Query: 1 MGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSP 60
+ L G+T P+E +A+EE++ A SV + S L L+R GS
Sbjct: 43 LAELGLLGMTTPEEWGGVGLDSVTWALALEELAAADPSVAVIVSVTSGLPQYMLLRFGSE 102
Query: 61 AQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQ 120
AQK +YL L GE +GA ++EP AGSD ++ +A RV GG+++NG K W T+ A
Sbjct: 103 AQKRRYLVPLARGEWIGAFCLTEPQAGSDAKSLRAEARRVKGGFVLNGVKSWITSAGHAH 162
Query: 121 TLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENV 180
VV A+T+ KGI+AF++EKG PG S + +K+G+ + T E+ E FVP EN+
Sbjct: 163 LYVVMARTE-----KGISAFLVEKGTPGLSFGRPEEKMGLHAAHTAEVRLEEVFVPEENL 217
Query: 181 LGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGK 240
LG+EG+G+ ++GLD R+ +AA +GI + ++ Y +REQFG+ L E Q I K
Sbjct: 218 LGEEGRGLAYALAGLDSGRVGVAAQAVGIARGAFEIAKAYAEEREQFGKKLKEHQAIAFK 277
Query: 241 TADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVTLQAIQCLGGNGYV 300
ADM+ + ++R+ V AR D G+ + + L A+ A +VT +A+Q LGG GY
Sbjct: 278 IADMHVKIAAARALVLEAARKKDRGERFTLEASAAKLFASAAAVEVTREAVQVLGGYGYH 337
Query: 301 NEYATGRLLRDAKLYEIGAGTSEIRRMIIGRALLK 335
+Y R RDAK+ EI GTSEI+R++I R L +
Sbjct: 338 RDYRVERYYRDAKVTEIYEGTSEIQRLVIARELYR 372
>pdb|1UKW|A Chain A, Crystal Structure Of Medium-Chain Acyl-Coa Dehydrogenase
From Thermus Thermophilus Hb8
pdb|1UKW|B Chain B, Crystal Structure Of Medium-Chain Acyl-Coa Dehydrogenase
From Thermus Thermophilus Hb8
Length = 379
Score = 221 bits (563), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 116/288 (40%), Positives = 167/288 (57%)
Query: 47 SNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYII 106
S+L I ++ G+ QK+++L L + A A+SEP GSD +K +A R Y++
Sbjct: 90 SDLGITPVLLAGTEEQKERFLRPLTEKPALAAFALSEPGNGSDAAALKTRAIRQGDHYVL 149
Query: 107 NGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTC 166
NG KMW +NG A+ +VV+A + + KG+ A ++E+G PGF + K+G R S T
Sbjct: 150 NGTKMWISNGGEAEWVVVFATVNPELRHKGVVALVVERGTPGFKAIKIHGKMGQRASGTY 209
Query: 167 ELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQ 226
ELVFE+ VP EN LG+EG+G + M L+ R+ +AAG +G+ + LD Y ++RE
Sbjct: 210 ELVFEDVKVPVENRLGEEGEGFKIAMQTLNKTRIPVAAGSVGVARRALDEARKYAKEREA 269
Query: 227 FGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQV 286
FG P+ FQ IQ K DM ++++R Y Y A D G A A+E A +
Sbjct: 270 FGEPIANFQAIQFKLVDMLIGIETARMYTYYAAWLADQGLPHAHASAIAKAYASEIAFEA 329
Query: 287 TLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRALL 334
QAIQ GG GYV E+ +LLRD KL +I GT+EI+R+II R +L
Sbjct: 330 ANQAIQIHGGYGYVREFPVEKLLRDVKLNQIYEGTNEIQRLIIARHIL 377
>pdb|3PFD|A Chain A, Crystal Structure Of An Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Reduced Flavin
Adenine Dinucleotide Solved By Combined Iodide Ion Sad
Mr
pdb|3PFD|B Chain B, Crystal Structure Of An Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Reduced Flavin
Adenine Dinucleotide Solved By Combined Iodide Ion Sad
Mr
pdb|3PFD|C Chain C, Crystal Structure Of An Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Reduced Flavin
Adenine Dinucleotide Solved By Combined Iodide Ion Sad
Mr
pdb|3PFD|D Chain D, Crystal Structure Of An Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Reduced Flavin
Adenine Dinucleotide Solved By Combined Iodide Ion Sad
Mr
Length = 393
Score = 217 bits (553), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 120/331 (36%), Positives = 184/331 (55%), Gaps = 2/331 (0%)
Query: 6 LHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDK 65
I P+E CI +EE++R S L A + L L+ GS K +
Sbjct: 64 FSAIHVPEEYGGQGADSVATCIVIEEVARVDCSASL-IPAVNKLGTMGLILRGSEELKKQ 122
Query: 66 YLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVY 125
LP + SGE + + A+SE AGSD M+ +A +I+NG+K W TNG + V
Sbjct: 123 VLPAVASGEAMASYALSEREAGSDAASMRTRAVADGDDWILNGSKCWITNGGKSTWYTVM 182
Query: 126 AKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEG 185
A TD G+ GI+AF++ K GF+ K KLG++GS T EL FENC +P + ++G+ G
Sbjct: 183 AVTDPDKGANGISAFMVHKDDEGFTVGPKERKLGIKGSPTTELYFENCRIPGDRIIGEPG 242
Query: 186 KGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMY 245
G ++ LD R + A +GI Q LD + Y ++R+QFGRP+ + Q +Q ADM
Sbjct: 243 TGFKTALATLDHTRPTIGAQAVGIAQGALDAAIAYTKERKQFGRPVSDNQGVQFMLADMA 302
Query: 246 TALQSSRSYVYSVARDCDNGKVDPKDCAGVILC-AAERATQVTLQAIQCLGGNGYVNEYA 304
++++R VYS A + G+ D + C A++ A +VT A+Q GG GY ++
Sbjct: 303 MKIEAARLMVYSAAARAERGEGDLGFISAASKCFASDVAMEVTTDAVQLFGGYGYTQDFP 362
Query: 305 TGRLLRDAKLYEIGAGTSEIRRMIIGRALLK 335
R++RDAK+ +I GT++I+R+++ RALL+
Sbjct: 363 VERMMRDAKITQIYEGTNQIQRVVMSRALLR 393
>pdb|1WS9|A Chain A, Crystal Structure Of Project Id Tt0172 From Thermus
Thermophilus Hb8
pdb|1WS9|B Chain B, Crystal Structure Of Project Id Tt0172 From Thermus
Thermophilus Hb8
pdb|2CX9|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase
pdb|2CX9|B Chain B, Crystal Structure Of Acyl-Coa Dehydrogenase
pdb|2CX9|C Chain C, Crystal Structure Of Acyl-Coa Dehydrogenase
pdb|2CX9|D Chain D, Crystal Structure Of Acyl-Coa Dehydrogenase
pdb|2D29|A Chain A, Structural Study On Project Id Tt0172 From Thermus
Thermophilus Hb8
pdb|2D29|B Chain B, Structural Study On Project Id Tt0172 From Thermus
Thermophilus Hb8
Length = 387
Score = 213 bits (543), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 129/339 (38%), Positives = 192/339 (56%), Gaps = 4/339 (1%)
Query: 1 MGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSP 60
+ F + G P+ +E I+ G++ L+ +H++L ++ GS
Sbjct: 47 LAEFGVFGALVPEAYGGAGLSTRLFARMVEAIAYYDGALALTVASHNSLATGHILLAGSE 106
Query: 61 AQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQ 120
AQK+ +LPKL SGE +GA ++EP +GSD +K KA++V+GG+ +NG K + T G VA
Sbjct: 107 AQKEAFLPKLASGEALGAWGLTEPGSGSDAAALKTKAEKVEGGWRLNGTKQFITQGSVAG 166
Query: 121 TLVVYAKTDIKAGS----KGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVP 176
VV A+TD +GI+AF + G +K +KLG+ SDT +L+ E+ FVP
Sbjct: 167 VYVVMARTDPPPSPERKHQGISAFAFFRPERGLKVGRKEEKLGLTASDTAQLILEDLFVP 226
Query: 177 NENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQF 236
E +LG+ GKG Y ++ LD R+ +AA +G+ QA LD L Y + RE FGRP+ EF+
Sbjct: 227 EEALLGERGKGFYDVLRVLDGGRIGIAAMAVGLGQAALDYALAYAKGREAFGRPIAEFEG 286
Query: 237 IQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVTLQAIQCLGG 296
+ K A+ T L+++R A D G+ + A L A+E A + +AIQ LGG
Sbjct: 287 VSFKLAEAATELEAARLLYLKAAELKDAGRPFTLEAAQAKLFASEAAVKACDEAIQILGG 346
Query: 297 NGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRALLK 335
GYV +Y R RDA+L IG GTSEI +++I R LL+
Sbjct: 347 YGYVKDYPVERYWRDARLTRIGEGTSEILKLVIARRLLE 385
>pdb|2JIF|A Chain A, Structure Of Human Short-Branched Chain Acyl-Coa
Dehydrogenase (Acadsb)
pdb|2JIF|B Chain B, Structure Of Human Short-Branched Chain Acyl-Coa
Dehydrogenase (Acadsb)
pdb|2JIF|C Chain C, Structure Of Human Short-Branched Chain Acyl-Coa
Dehydrogenase (Acadsb)
pdb|2JIF|D Chain D, Structure Of Human Short-Branched Chain Acyl-Coa
Dehydrogenase (Acadsb)
Length = 404
Score = 212 bits (539), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 119/329 (36%), Positives = 181/329 (55%), Gaps = 3/329 (0%)
Query: 6 LHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVR-HGSPAQKD 64
L GI E + +EE+++ SV + + N IN L+R HG+ QK
Sbjct: 74 LMGIEVDPEYGGTGASFLSTVLVIEELAKVDASVAV-FCEIQNTLINTLIRKHGTEEQKA 132
Query: 65 KYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVV 124
YLP+L + E VG+ +SE AGSD +K +AD+ Y++NG+KMW ++ A +V
Sbjct: 133 TYLPQLTT-EKVGSFCLSEAGAGSDSFALKTRADKEGDYYVLNGSKMWISSAEHAGLFLV 191
Query: 125 YAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQE 184
A D G KGIT+F++++ PG + +KLG+R S TC L FEN VP N+LGQ
Sbjct: 192 MANVDPTIGYKGITSFLVDRDTPGLHIGKPENKLGLRASSTCPLTFENVKVPEANILGQI 251
Query: 185 GKGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADM 244
G G + L+ R+ +AA LG+ Q C D +PY+++R QFG+ L +FQ +Q + A +
Sbjct: 252 GHGYKYAIGSLNEGRIGIAAQMLGLAQGCFDYTIPYIKERIQFGKRLFDFQGLQHQVAHV 311
Query: 245 YTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYA 304
T L+++R Y+ AR + GK K+ + A+E A Q T + I+ +GG GY +Y
Sbjct: 312 ATQLEAARLLTYNAARLLEAGKPFIKEASMAKYYASEIAGQTTSKCIEWMGGVGYTKDYP 371
Query: 305 TGRLLRDAKLYEIGAGTSEIRRMIIGRAL 333
+ RDAK+ I G S I+ I + +
Sbjct: 372 VEKYFRDAKIGTIYEGASNIQLNTIAKHI 400
>pdb|3MPI|A Chain A, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
Glutaryl-Coa Complex
pdb|3MPI|B Chain B, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
Glutaryl-Coa Complex
pdb|3MPI|C Chain C, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
Glutaryl-Coa Complex
pdb|3MPI|D Chain D, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
Glutaryl-Coa Complex
pdb|3MPJ|A Chain A, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
pdb|3MPJ|B Chain B, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
pdb|3MPJ|D Chain D, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
pdb|3MPJ|E Chain E, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
pdb|3MPJ|F Chain F, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
pdb|3MPJ|G Chain G, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
Length = 397
Score = 207 bits (526), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 122/333 (36%), Positives = 178/333 (53%), Gaps = 5/333 (1%)
Query: 1 MGNFNLHGITAPQEX--XXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHG 58
MG G P+E I EEI+R S ++ + C ++ +G
Sbjct: 46 MGELGFFGTVIPEEYGGEGMDQGWLAAMIVTEEIARGSSALRVQLNMEVLGCAYTILTYG 105
Query: 59 SPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPV 118
S A K KY+PKL S E +G ++EP+AGSDV+ M A+ +++NG+K W +N
Sbjct: 106 SEALKKKYVPKLSSAEFLGGFGITEPDAGSDVMAMSSTAEDKGDHWLLNGSKTWISNAAQ 165
Query: 119 AQTLVVYAKTDIKAGSKGITAFIIE-KGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPN 177
A L+ YA TD AGS+G++AF+IE + PG T+ L+KLG S T EL +N VP
Sbjct: 166 ADVLIYYAYTDKAAGSRGLSAFVIEPRNFPGIKTSN-LEKLGSHASPTGELFLDNVKVPK 224
Query: 178 ENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFI 237
EN+LG+ G G ++ L+ RL AAG +G+ QACLD + Y +R QFG+P+G+FQ
Sbjct: 225 ENILGKPGDGARIVFGSLNHTRLSAAAGGVGLAQACLDAAIKYCNERRQFGKPIGDFQMN 284
Query: 238 QGKTADMYTALQSSRSYVYSVARDCDNGKVDPK-DCAGVILCAAERATQVTLQAIQCLGG 296
Q A M ++++R Y A D G+++ D A A E ++ A++ LG
Sbjct: 285 QDMIAQMAVEVEAARLLAYKAAAAKDEGRLNNGLDVAMAKYAAGEAVSKCANYAMRILGA 344
Query: 297 NGYVNEYATGRLLRDAKLYEIGAGTSEIRRMII 329
GY EY R RDA Y + G++ I +MII
Sbjct: 345 YGYSTEYPVARFYRDAPTYYMVEGSANICKMII 377
>pdb|2PG0|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase From
Geobacillus Kaustophilus
pdb|2PG0|B Chain B, Crystal Structure Of Acyl-Coa Dehydrogenase From
Geobacillus Kaustophilus
Length = 385
Score = 205 bits (522), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 113/306 (36%), Positives = 173/306 (56%), Gaps = 3/306 (0%)
Query: 30 EEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSD 89
EE+ + GS + G H+++ + +G+ QK K+LPK ++GE + A+AM+EP AGSD
Sbjct: 79 EELEKV-GSSLVGIGLHNDIVTPYIASYGTEEQKQKWLPKCVTGELITAIAMTEPGAGSD 137
Query: 90 VVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAG--SKGITAFIIEKGMP 147
+ + A + YI+NG K + TNG A +VV KTD +A +GI+ ++E+ P
Sbjct: 138 LANISTTAVKDGDYYIVNGQKTFITNGIHADLIVVACKTDPQAKPPHRGISLLVVERDTP 197
Query: 148 GFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPL 207
GF+ +KL+K+G+ DT EL F++ VP N+LG+EGKG Y +M L ERLV+A
Sbjct: 198 GFTRGRKLEKVGLHAQDTAELFFQDAKVPAYNLLGEEGKGFYYLMEKLQQERLVVAIAAQ 257
Query: 208 GIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKV 267
+ + YV+QR FG+ + EFQ +Q + A+M T + R++V V + GK
Sbjct: 258 TAAEVMFSLTKQYVKQRTAFGKRVSEFQTVQFRLAEMATEIALGRTFVDRVIEEHMAGKQ 317
Query: 268 DPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRM 327
+ + E A +V +A+Q GG GY+ EY R RD + I AGT+E+ +
Sbjct: 318 IVTEVSMAKWWITEMAKRVAAEAMQLHGGYGYMEEYEIARRYRDIPVSAIYAGTNEMMKT 377
Query: 328 IIGRAL 333
II R L
Sbjct: 378 IIARQL 383
>pdb|2Z1Q|A Chain A, Crystal Structure Of Acyl Coa Dehydrogenase
pdb|2Z1Q|B Chain B, Crystal Structure Of Acyl Coa Dehydrogenase
Length = 577
Score = 199 bits (506), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 120/351 (34%), Positives = 180/351 (51%), Gaps = 21/351 (5%)
Query: 2 GNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPA 61
G L I P+E + EE+S SG ++YGAH+++ LV G+
Sbjct: 70 GELGLLAIDVPEEYGGLDLPKVISTVVAEELS-GSGGFSVTYGAHTSIGTLPLVYFGTEE 128
Query: 62 QKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGG--YIINGNKMWCTNGPVA 119
QK KYLPKL SGE + A ++EP +GSD + K +A + G YI+NG K W +N A
Sbjct: 129 QKRKYLPKLASGEWIAAYCLTEPGSGSDALAAKTRATLSEDGKHYILNGVKQWISNAGFA 188
Query: 120 QTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNEN 179
V+AK D + TAF++E+ PG S + K+G++ S T +++ E+ VP EN
Sbjct: 189 HLFTVFAKVD----GEHFTAFLVERDTPGLSFGPEEKKMGIKASSTRQVILEDVKVPVEN 244
Query: 180 VLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQG 239
VLG+ GKG + + L++ R L AG +G + L++ Y QR QFGRP+G F IQ
Sbjct: 245 VLGEIGKGHKIAFNVLNVGRYKLGAGAVGGAKRALELSAQYATQRVQFGRPIGRFGLIQQ 304
Query: 240 KTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVTL----------- 288
K +M + + ++ S VY D + K V+ E A + ++
Sbjct: 305 KLGEMASRIYAAESAVYRTVGLIDEALLGKKGPEAVMAGIEEYAVEASIIKVLGSEVLDY 364
Query: 289 ---QAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRALLKQ 336
+ +Q GG GY EY R RDA++ I GT+EI R++I LL++
Sbjct: 365 VVDEGVQIHGGYGYSQEYPIERAYRDARINRIFEGTNEINRLLIPGMLLRR 415
>pdb|3NF4|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Flavin Adenine
Dinucleotide
pdb|3NF4|B Chain B, Crystal Structure Of Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Flavin Adenine
Dinucleotide
Length = 387
Score = 194 bits (492), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 112/335 (33%), Positives = 184/335 (54%), Gaps = 3/335 (0%)
Query: 1 MGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSP 60
+G L + P+E + +EEI+ SV ++ HS L + L+ G+
Sbjct: 56 LGAAGLLSLPQPEEWGGGGQPYEVYLQVLEEIAARWASVAVAVSVHS-LSSHPLLVFGTE 114
Query: 61 AQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQ 120
QK ++LP ++SGE +GA ++SEP AGSD ++C A DGGY+ING+K W T+G A
Sbjct: 115 EQKKRWLPGMLSGEQIGAYSLSEPQAGSDAAALRCAATPTDGGYVINGSKSWITHGGKAD 174
Query: 121 TLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENV 180
++A+T GS+G++ F++ PG S + +K+G+ T ++N + +
Sbjct: 175 FYTLFARTG--EGSRGVSCFLVPADQPGLSFGKPEEKMGLHAVPTTSAFYDNARIDADRR 232
Query: 181 LGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGK 240
+G+EG+G+ + S LD RL +AA G+ QA LD + Y +R FGR + + Q +
Sbjct: 233 IGEEGQGLQIAFSALDSGRLGIAAVATGLAQAALDEAVAYANERTAFGRKIIDHQGLGFL 292
Query: 241 TADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVTLQAIQCLGGNGYV 300
ADM A+ ++R+ AR D G+ + + L A + A +VT A+Q GG GY
Sbjct: 293 LADMAAAVATARATYLDAARRRDQGRPYSQQASIAKLTATDAAMKVTTDAVQVFGGVGYT 352
Query: 301 NEYATGRLLRDAKLYEIGAGTSEIRRMIIGRALLK 335
+Y R +R+AK+ +I GT++I+R++I R L +
Sbjct: 353 RDYRVERYMREAKIMQIFEGTNQIQRLVIARGLTR 387
>pdb|3D6B|A Chain A, 2.2 A Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei
pdb|3D6B|B Chain B, 2.2 A Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei
pdb|3D6B|C Chain C, 2.2 A Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei
pdb|3D6B|D Chain D, 2.2 A Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei
Length = 395
Score = 192 bits (489), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 118/332 (35%), Positives = 169/332 (50%), Gaps = 2/332 (0%)
Query: 1 MGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSP 60
MG L G T P++ + + E+ R S+L + + GS
Sbjct: 58 MGEIGLLGPTIPEQYGGPGLDYVSYGLIAREVERVDSGYRSMMSVQSSLVMVPIFEFGSD 117
Query: 61 AQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQ 120
AQK+KYLPKL +GE +G ++EPN GSD M +A +V GGY ++G+KMW TN P+A
Sbjct: 118 AQKEKYLPKLATGEWIGCFGLTEPNHGSDPGSMVTRARKVPGGYSLSGSKMWITNSPIAD 177
Query: 121 TLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENV 180
VV+AK D + G I FI+EKG G S K+G+R S T E+V + FVP EN+
Sbjct: 178 VFVVWAKLD-EDGRDEIRGFILEKGCKGLSAPAIHGKVGLRASITGEIVLDEAFVPEENI 236
Query: 181 LGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGK 240
L KG+ + L+ R +A G LG ++C + YV R+QFGRPL Q IQ K
Sbjct: 237 LPHV-KGLRGPFTCLNSARYGIAWGALGAAESCWHIARQYVLDRKQFGRPLAANQLIQKK 295
Query: 241 TADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVTLQAIQCLGGNGYV 300
ADM T + V + R D G + + + + +A + A LGGNG
Sbjct: 296 LADMQTEITLGLQGVLRLGRMKDEGTAAVEITSIMKRNSCGKALDIARLARDMLGGNGIS 355
Query: 301 NEYATGRLLRDAKLYEIGAGTSEIRRMIIGRA 332
+E+ R L + ++ GT +I +I+GRA
Sbjct: 356 DEFGVARHLVNLEVVNTYEGTHDIHALILGRA 387
>pdb|3EOM|A Chain A, 2.4 A Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei
pdb|3EOM|B Chain B, 2.4 A Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei
pdb|3EOM|C Chain C, 2.4 A Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei
pdb|3EOM|D Chain D, 2.4 A Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei
pdb|3EON|A Chain A, 2.55a Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei In Complex
With A Small Molecule
pdb|3EON|B Chain B, 2.55a Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei In Complex
With A Small Molecule
pdb|3EON|C Chain C, 2.55a Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei In Complex
With A Small Molecule
pdb|3EON|D Chain D, 2.55a Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei In Complex
With A Small Molecule
pdb|3II9|A Chain A, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei At 1.73 Angstrom
pdb|3II9|B Chain B, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei At 1.73 Angstrom
pdb|3II9|C Chain C, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei At 1.73 Angstrom
pdb|3II9|D Chain D, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei At 1.73 Angstrom
Length = 396
Score = 192 bits (489), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 118/332 (35%), Positives = 169/332 (50%), Gaps = 2/332 (0%)
Query: 1 MGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSP 60
MG L G T P++ + + E+ R S+L + + GS
Sbjct: 59 MGEIGLLGPTIPEQYGGPGLDYVSYGLIAREVERVDSGYRSMMSVQSSLVMVPIFEFGSD 118
Query: 61 AQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQ 120
AQK+KYLPKL +GE +G ++EPN GSD M +A +V GGY ++G+KMW TN P+A
Sbjct: 119 AQKEKYLPKLATGEWIGCFGLTEPNHGSDPGSMVTRARKVPGGYSLSGSKMWITNSPIAD 178
Query: 121 TLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENV 180
VV+AK D + G I FI+EKG G S K+G+R S T E+V + FVP EN+
Sbjct: 179 VFVVWAKLD-EDGRDEIRGFILEKGCKGLSAPAIHGKVGLRASITGEIVLDEAFVPEENI 237
Query: 181 LGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGK 240
L KG+ + L+ R +A G LG ++C + YV R+QFGRPL Q IQ K
Sbjct: 238 LPHV-KGLRGPFTCLNSARYGIAWGALGAAESCWHIARQYVLDRKQFGRPLAANQLIQKK 296
Query: 241 TADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVTLQAIQCLGGNGYV 300
ADM T + V + R D G + + + + +A + A LGGNG
Sbjct: 297 LADMQTEITLGLQGVLRLGRMKDEGTAAVEITSIMKRNSCGKALDIARLARDMLGGNGIS 356
Query: 301 NEYATGRLLRDAKLYEIGAGTSEIRRMIIGRA 332
+E+ R L + ++ GT +I +I+GRA
Sbjct: 357 DEFGVARHLVNLEVVNTYEGTHDIHALILGRA 388
>pdb|3GQT|A Chain A, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment
(1,4-Dimethyl-1,2,3,4-
Tetrahydroquinoxalin-6-Yl)methylamine
pdb|3GQT|B Chain B, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment
(1,4-Dimethyl-1,2,3,4-
Tetrahydroquinoxalin-6-Yl)methylamine
pdb|3GQT|C Chain C, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment
(1,4-Dimethyl-1,2,3,4-
Tetrahydroquinoxalin-6-Yl)methylamine
pdb|3GQT|D Chain D, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment
(1,4-Dimethyl-1,2,3,4-
Tetrahydroquinoxalin-6-Yl)methylamine
pdb|3GNC|A Chain A, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment 6421
pdb|3GNC|B Chain B, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment 6421
pdb|3GNC|C Chain C, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment 6421
pdb|3GNC|D Chain D, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment 6421
Length = 399
Score = 192 bits (489), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 118/332 (35%), Positives = 169/332 (50%), Gaps = 2/332 (0%)
Query: 1 MGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSP 60
MG L G T P++ + + E+ R S+L + + GS
Sbjct: 62 MGEIGLLGPTIPEQYGGPGLDYVSYGLIAREVERVDSGYRSMMSVQSSLVMVPIFEFGSD 121
Query: 61 AQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQ 120
AQK+KYLPKL +GE +G ++EPN GSD M +A +V GGY ++G+KMW TN P+A
Sbjct: 122 AQKEKYLPKLATGEWIGCFGLTEPNHGSDPGSMVTRARKVPGGYSLSGSKMWITNSPIAD 181
Query: 121 TLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENV 180
VV+AK D + G I FI+EKG G S K+G+R S T E+V + FVP EN+
Sbjct: 182 VFVVWAKLD-EDGRDEIRGFILEKGCKGLSAPAIHGKVGLRASITGEIVLDEAFVPEENI 240
Query: 181 LGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGK 240
L KG+ + L+ R +A G LG ++C + YV R+QFGRPL Q IQ K
Sbjct: 241 LPHV-KGLRGPFTCLNSARYGIAWGALGAAESCWHIARQYVLDRKQFGRPLAANQLIQKK 299
Query: 241 TADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVTLQAIQCLGGNGYV 300
ADM T + V + R D G + + + + +A + A LGGNG
Sbjct: 300 LADMQTEITLGLQGVLRLGRMKDEGTAAVEITSIMKRNSCGKALDIARLARDMLGGNGIS 359
Query: 301 NEYATGRLLRDAKLYEIGAGTSEIRRMIIGRA 332
+E+ R L + ++ GT +I +I+GRA
Sbjct: 360 DEFGVARHLVNLEVVNTYEGTHDIHALILGRA 391
>pdb|1EGD|A Chain A, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGD|B Chain B, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGD|C Chain C, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGD|D Chain D, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGC|A Chain A, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase Complexed With Octanoyl-Coa
pdb|1EGC|B Chain B, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase Complexed With Octanoyl-Coa
pdb|1EGC|C Chain C, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase Complexed With Octanoyl-Coa
pdb|1EGC|D Chain D, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase Complexed With Octanoyl-Coa
Length = 396
Score = 191 bits (486), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 117/310 (37%), Positives = 168/310 (54%), Gaps = 6/310 (1%)
Query: 26 CIAMEEISRASGSVGLSYGAHSN-LCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEP 84
C+ EE+ A G G+ N L ++ G+ QK KYL ++ + A ++EP
Sbjct: 81 CLISEEL--AYGCTGVQTAIEGNSLGQMPIIIAGNDQQKKKYLGRMTEEPLMCAYCVTEP 138
Query: 85 NAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKA---GSKGITAFI 141
AGSDV G+K KA++ YIING KMW TNG A + A++D +K T FI
Sbjct: 139 GAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKANWYFLLARSDPDPKAPANKAFTGFI 198
Query: 142 IEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLV 201
+E PG +K +G R SDT +VFE+ VP ENVL +G G V M D ER V
Sbjct: 199 VEADTPGIQIGRKELNMGQRCSDTRGIVFEDVKVPKENVLIGDGAGFKVAMGAFDKERPV 258
Query: 202 LAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARD 261
+AAG +G+ Q LD Y +R+ FG+ L E Q I A+M ++ +R A +
Sbjct: 259 VAAGAVGLAQRALDEATKYALERKTFGKLLVEHQAISFMLAEMAMKVELARMSYQRAAWE 318
Query: 262 CDNGKVDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGT 321
D+G+ + + A + A Q+ A+Q LGGNG+ EY +L+RDAK+Y+I GT
Sbjct: 319 VDSGRRNTYYASIAKAFAGDIANQLATDAVQILGGNGFNTEYPVEKLMRDAKIYQIYGGT 378
Query: 322 SEIRRMIIGR 331
S+I+R+I+ R
Sbjct: 379 SQIQRLIVAR 388
>pdb|1UDY|A Chain A, Medium-Chain Acyl-Coa Dehydrogenase With
3-Thiaoctanoyl-Coa
pdb|1UDY|B Chain B, Medium-Chain Acyl-Coa Dehydrogenase With
3-Thiaoctanoyl-Coa
pdb|1UDY|C Chain C, Medium-Chain Acyl-Coa Dehydrogenase With
3-Thiaoctanoyl-Coa
pdb|1UDY|D Chain D, Medium-Chain Acyl-Coa Dehydrogenase With
3-Thiaoctanoyl-Coa
Length = 396
Score = 190 bits (482), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 117/310 (37%), Positives = 167/310 (53%), Gaps = 6/310 (1%)
Query: 26 CIAMEEISRASGSVGLSYGAHSN-LCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEP 84
C+ EE+ A G G+ +N L L+ G+ Q+ KYL ++ + A ++EP
Sbjct: 81 CLITEEL--AYGCTGVQTAIEANTLGQVPLIIGGNYQQQKKYLGRMTEEPLMCAYCVTEP 138
Query: 85 NAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKA---GSKGITAFI 141
AGSDV G+K KA++ YIING KMW TNG A + A++D SK T FI
Sbjct: 139 GAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKANWYFLLARSDPDPKAPASKAFTGFI 198
Query: 142 IEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLV 201
+E PG +K +G R SDT +VFE+ VP ENVL EG G + M D R
Sbjct: 199 VEADTPGVQIGRKEINMGQRCSDTRGIVFEDVRVPKENVLTGEGAGFKIAMGTFDKTRPP 258
Query: 202 LAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARD 261
+AAG +G+ Q LD Y +R+ FG+ L E Q I ADM ++ +R A +
Sbjct: 259 VAAGAVGLAQRALDEATKYALERKTFGKLLAEHQGISFLLADMAMKVELARLSYQRAAWE 318
Query: 262 CDNGKVDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGT 321
D+G+ + + AA+ A Q+ A+Q GGNG+ EY +L+RDAK+Y+I GT
Sbjct: 319 IDSGRRNTYYASIAKAYAADIANQLATDAVQVFGGNGFNTEYPVEKLMRDAKIYQIYEGT 378
Query: 322 SEIRRMIIGR 331
++I+R+II R
Sbjct: 379 AQIQRIIIAR 388
>pdb|3MDD|A Chain A, Crystal Structures Of Medium Chain Acyl-Coa Dehydrogenase
From Pig Liver Mitochondria With And Without Substrate
pdb|3MDD|B Chain B, Crystal Structures Of Medium Chain Acyl-Coa Dehydrogenase
From Pig Liver Mitochondria With And Without Substrate
pdb|3MDE|A Chain A, Crystal Structures Of Medium Chain Acyl-Coa Dehydrogenase
From Pig Liver Mitochondria With And Without Substrate
pdb|3MDE|B Chain B, Crystal Structures Of Medium Chain Acyl-Coa Dehydrogenase
From Pig Liver Mitochondria With And Without Substrate
Length = 385
Score = 190 bits (482), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 117/310 (37%), Positives = 167/310 (53%), Gaps = 6/310 (1%)
Query: 26 CIAMEEISRASGSVGLSYGAHSN-LCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEP 84
C+ EE+ A G G+ +N L L+ G+ Q+ KYL ++ + A ++EP
Sbjct: 71 CLITEEL--AYGCTGVQTAIEANTLGQVPLIIGGNYQQQKKYLGRMTEEPLMCAYCVTEP 128
Query: 85 NAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKA---GSKGITAFI 141
AGSDV G+K KA++ YIING KMW TNG A + A++D SK T FI
Sbjct: 129 GAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKANWYFLLARSDPDPKAPASKAFTGFI 188
Query: 142 IEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLV 201
+E PG +K +G R SDT +VFE+ VP ENVL EG G + M D R
Sbjct: 189 VEADTPGVQIGRKEINMGQRCSDTRGIVFEDVRVPKENVLTGEGAGFKIAMGTFDKTRPP 248
Query: 202 LAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARD 261
+AAG +G+ Q LD Y +R+ FG+ L E Q I ADM ++ +R A +
Sbjct: 249 VAAGAVGLAQRALDEATKYALERKTFGKLLAEHQGISFLLADMAMKVELARLSYQRAAWE 308
Query: 262 CDNGKVDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGT 321
D+G+ + + AA+ A Q+ A+Q GGNG+ EY +L+RDAK+Y+I GT
Sbjct: 309 IDSGRRNTYYASIAKAYAADIANQLATDAVQVFGGNGFNTEYPVEKLMRDAKIYQIYEGT 368
Query: 322 SEIRRMIIGR 331
++I+R+II R
Sbjct: 369 AQIQRIIIAR 378
>pdb|2A1T|A Chain A, Structure Of The Human Mcad:etf E165betaa Complex
pdb|2A1T|B Chain B, Structure Of The Human Mcad:etf E165betaa Complex
pdb|2A1T|C Chain C, Structure Of The Human Mcad:etf E165betaa Complex
pdb|2A1T|D Chain D, Structure Of The Human Mcad:etf E165betaa Complex
Length = 421
Score = 189 bits (480), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 116/310 (37%), Positives = 167/310 (53%), Gaps = 6/310 (1%)
Query: 26 CIAMEEISRASGSVGLSYGAHSN-LCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEP 84
C+ EE+ A G G+ N L ++ G+ QK KYL ++ + A ++EP
Sbjct: 106 CLISEEL--AYGCTGVQTAIEGNSLGQMPIIIAGNDQQKKKYLGRMTEEPLMCAYCVTEP 163
Query: 85 NAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKA---GSKGITAFI 141
AGSDV G+K KA++ YIING KMW TNG A + A++D +K T FI
Sbjct: 164 GAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKANWYFLLARSDPDPKAPANKAFTGFI 223
Query: 142 IEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLV 201
+E PG +K +G R SDT +VFE+ VP ENVL +G G V M D R V
Sbjct: 224 VEADTPGIQIGRKELNMGQRCSDTRGIVFEDVKVPKENVLIGDGAGFKVAMGAFDKTRPV 283
Query: 202 LAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARD 261
+AAG +G+ Q LD Y +R+ FG+ L E Q I A+M ++ +R A +
Sbjct: 284 VAAGAVGLAQRALDEATKYALERKTFGKLLVEHQAISFMLAEMAMKVELARMSYQRAAWE 343
Query: 262 CDNGKVDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGT 321
D+G+ + + A + A Q+ A+Q LGGNG+ EY +L+RDAK+Y+I GT
Sbjct: 344 VDSGRRNTYYASIAKAFAGDIANQLATDAVQILGGNGFNTEYPVEKLMRDAKIYQIYEGT 403
Query: 322 SEIRRMIIGR 331
S+I+R+I+ R
Sbjct: 404 SQIQRLIVAR 413
>pdb|1EGE|A Chain A, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGE|B Chain B, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGE|C Chain C, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGE|D Chain D, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1T9G|A Chain A, Structure Of The Human Mcad:etf Complex
pdb|1T9G|B Chain B, Structure Of The Human Mcad:etf Complex
pdb|1T9G|C Chain C, Structure Of The Human Mcad:etf Complex
pdb|1T9G|D Chain D, Structure Of The Human Mcad:etf Complex
Length = 396
Score = 189 bits (480), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 116/310 (37%), Positives = 167/310 (53%), Gaps = 6/310 (1%)
Query: 26 CIAMEEISRASGSVGLSYGAHSN-LCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEP 84
C+ EE+ A G G+ N L ++ G+ QK KYL ++ + A ++EP
Sbjct: 81 CLISEEL--AYGCTGVQTAIEGNSLGQMPIIIAGNDQQKKKYLGRMTEEPLMCAYCVTEP 138
Query: 85 NAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKA---GSKGITAFI 141
AGSDV G+K KA++ YIING KMW TNG A + A++D +K T FI
Sbjct: 139 GAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKANWYFLLARSDPDPKAPANKAFTGFI 198
Query: 142 IEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLV 201
+E PG +K +G R SDT +VFE+ VP ENVL +G G V M D R V
Sbjct: 199 VEADTPGIQIGRKELNMGQRCSDTRGIVFEDVKVPKENVLIGDGAGFKVAMGAFDKTRPV 258
Query: 202 LAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARD 261
+AAG +G+ Q LD Y +R+ FG+ L E Q I A+M ++ +R A +
Sbjct: 259 VAAGAVGLAQRALDEATKYALERKTFGKLLVEHQAISFMLAEMAMKVELARMSYQRAAWE 318
Query: 262 CDNGKVDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGT 321
D+G+ + + A + A Q+ A+Q LGGNG+ EY +L+RDAK+Y+I GT
Sbjct: 319 VDSGRRNTYYASIAKAFAGDIANQLATDAVQILGGNGFNTEYPVEKLMRDAKIYQIYEGT 378
Query: 322 SEIRRMIIGR 331
S+I+R+I+ R
Sbjct: 379 SQIQRLIVAR 388
>pdb|2UXW|A Chain A, Crystal Structure Of Human Very Long Chain Acyl-coa
Dehydrogenase (acadvl)
Length = 607
Score = 188 bits (478), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 106/299 (35%), Positives = 167/299 (55%), Gaps = 8/299 (2%)
Query: 39 VGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKAD 98
VG++ GAH ++ ++ G+ AQK+KYLPKL SGE V A ++EP++GSD ++ A
Sbjct: 126 VGITLGAHQSIGFKGILLFGTKAQKEKYLPKLASGETVAAFCLTEPSSGSDAASIRTSAV 185
Query: 99 RVDGG--YIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKG-----ITAFIIEKGMPGFST 151
G Y +NG+K+W +NG +A V+AKT + + G ITAF++E+G G +
Sbjct: 186 PSPCGKYYTLNGSKLWISNGGLADIFTVFAKTPVTDPATGAVKEKITAFVVERGFGGITH 245
Query: 152 AQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQ 211
K+G++ S+T E+ F+ VP+ENVLG+ G G V M L+ R +AA G M+
Sbjct: 246 GPPEKKMGIKASNTAEVFFDGVRVPSENVLGEVGSGFKVAMHILNNGRFGMAAALAGTMR 305
Query: 212 ACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKD 271
+ + + R QFG + F IQ K A M + S Y V+ + D G D +
Sbjct: 306 GIIAKAVDHATNRTQFGEKIHNFGLIQEKLARMVMLQYVTESMAYMVSANMDQGATDFQI 365
Query: 272 CAGVI-LCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMII 329
A + + +E A +VT + IQ +GG G++ E R+LRD +++ I GT++I R+ +
Sbjct: 366 EAAISKIFGSEAAWKVTDECIQIMGGMGFMKEPGVERVLRDLRIFRIFEGTNDILRLFV 424
>pdb|3B96|A Chain A, Structural Basis For Substrate Fatty-Acyl Chain
Specificity: Crystal Structure Of Human Very-Long-Chain
Acyl-Coa Dehydrogenase
Length = 587
Score = 188 bits (477), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 106/299 (35%), Positives = 167/299 (55%), Gaps = 8/299 (2%)
Query: 39 VGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKAD 98
VG++ GAH ++ ++ G+ AQK+KYLPKL SGE V A ++EP++GSD ++ A
Sbjct: 106 VGITLGAHQSIGFKGILLFGTKAQKEKYLPKLASGETVAAFCLTEPSSGSDAASIRTSAV 165
Query: 99 RVDGG--YIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKG-----ITAFIIEKGMPGFST 151
G Y +NG+K+W +NG +A V+AKT + + G ITAF++E+G G +
Sbjct: 166 PSPCGKYYTLNGSKLWISNGGLADIFTVFAKTPVTDPATGAVKEKITAFVVERGFGGITH 225
Query: 152 AQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQ 211
K+G++ S+T E+ F+ VP+ENVLG+ G G V M L+ R +AA G M+
Sbjct: 226 GPPEKKMGIKASNTAEVFFDGVRVPSENVLGEVGSGFKVAMHILNNGRFGMAAALAGTMR 285
Query: 212 ACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKD 271
+ + + R QFG + F IQ K A M + S Y V+ + D G D +
Sbjct: 286 GIIAKAVDHATNRTQFGEKIHNFGLIQEKLARMVMLQYVTESMAYMVSANMDQGATDFQI 345
Query: 272 CAGVI-LCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMII 329
A + + +E A +VT + IQ +GG G++ E R+LRD +++ I GT++I R+ +
Sbjct: 346 EAAISKIFGSEAAWKVTDECIQIMGGMGFMKEPGVERVLRDLRIFRIFEGTNDILRLFV 404
>pdb|3OWA|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase Complexed With
Fad From Bacillus Anthracis
pdb|3OWA|B Chain B, Crystal Structure Of Acyl-Coa Dehydrogenase Complexed With
Fad From Bacillus Anthracis
pdb|3OWA|C Chain C, Crystal Structure Of Acyl-Coa Dehydrogenase Complexed With
Fad From Bacillus Anthracis
pdb|3OWA|D Chain D, Crystal Structure Of Acyl-Coa Dehydrogenase Complexed With
Fad From Bacillus Anthracis
Length = 597
Score = 182 bits (461), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 115/356 (32%), Positives = 175/356 (49%), Gaps = 26/356 (7%)
Query: 2 GNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPA 61
G L G P+E + E+ SRA G +++GAH + +V G+
Sbjct: 75 GELGLLGADVPEEYGGIGLDKVSSALIAEKFSRAGG-FAITHGAHVGIGSLPIVLFGNEE 133
Query: 62 QKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGG--YIINGNKMWCTNGPVA 119
QK KYLP L +GE + A A++EP +GSD +G K A G Y++NG K W TN A
Sbjct: 134 QKKKYLPLLATGEKLAAYALTEPGSGSDALGAKTTARLNAEGTHYVLNGEKQWITNSAFA 193
Query: 120 QTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNEN 179
+VYAK D + +AFI+EK G ST+ + K G++ S T L+ E+ VP EN
Sbjct: 194 DVFIVYAKID----GEHFSAFIVEKDYAGVSTSPEEKKXGIKCSSTRTLILEDALVPKEN 249
Query: 180 VLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQG 239
+LG+ GKG + + L++ R L G +G + +++ Y QR+QF +P+ F IQ
Sbjct: 250 LLGEIGKGHIIAFNILNIGRYKLGVGTVGSAKRAVEISAQYANQRQQFKQPIARFPLIQE 309
Query: 240 KTADMYTALQSSRSYVYSV-----ARDCDNGKVDPKDCAGVILCAAERATQVTL------ 288
K A+ ++ S VY +R + + KD V AE A + +L
Sbjct: 310 KLANXAAKTYAAESSVYRTVGLFESRXSTLSEEEVKDGKAVAASIAEYAIECSLNKVFGS 369
Query: 289 --------QAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRALLKQ 336
+ +Q GG G+ EY R RD+++ I GT+EI R+I+ L++
Sbjct: 370 EVLDYTVDEGVQIHGGYGFXAEYEIERXYRDSRINRIFEGTNEINRLIVPGTFLRK 425
>pdb|1RX0|A Chain A, Crystal Structure Of Isobutyryl-Coa Dehydrogenase
Complexed With SubstrateLIGAND.
pdb|1RX0|B Chain B, Crystal Structure Of Isobutyryl-Coa Dehydrogenase
Complexed With SubstrateLIGAND.
pdb|1RX0|C Chain C, Crystal Structure Of Isobutyryl-Coa Dehydrogenase
Complexed With SubstrateLIGAND.
pdb|1RX0|D Chain D, Crystal Structure Of Isobutyryl-Coa Dehydrogenase
Complexed With SubstrateLIGAND
Length = 393
Score = 162 bits (411), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 93/296 (31%), Positives = 161/296 (54%), Gaps = 2/296 (0%)
Query: 42 SYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVD 101
+Y + N+C + G+ Q+ K+ P L + E + ++EP +GSD + A +
Sbjct: 99 AYISIHNMCAWMIDSFGNEEQRHKFCPPLCTMEKFASYCLTEPGSGSDAASLLTSAKKQG 158
Query: 102 GGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMR 161
YI+NG+K + + + VV +T G KGI+ ++EKG PG S +K K+G
Sbjct: 159 DHYILNGSKAFISGAGESDIYVVMCRTG-GPGPKGISCIVVEKGTPGLSFGKKEKKVGWN 217
Query: 162 GSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYV 221
T ++FE+C VP N +G EG+G + + GL+ R+ +A+ LG A + + ++
Sbjct: 218 SQPTRAVIFEDCAVPVANRIGSEGQGFLIAVRGLNGGRINIASCSLGAAHASVILTRDHL 277
Query: 222 RQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKD-CAGVILCAA 280
R+QFG PL Q++Q ADM T L ++R V + A + D C+ L A
Sbjct: 278 NVRKQFGEPLASNQYLQFTLADMATRLVAARLMVRNAAVALQEERKDAVALCSMAKLFAT 337
Query: 281 ERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRALLKQ 336
+ + QA+Q GG GY+ +YA + +RD+++++I G++E+ R++I R+LL++
Sbjct: 338 DECFAICNQALQMHGGYGYLKDYAVQQYVRDSRVHQILEGSNEVMRILISRSLLQE 393
>pdb|3R7K|A Chain A, Crystal Structure Of A Probable Acyl Coa Dehydrogenase
From Mycobacterium Abscessus Atcc 19977 DSM 44196
pdb|3R7K|B Chain B, Crystal Structure Of A Probable Acyl Coa Dehydrogenase
From Mycobacterium Abscessus Atcc 19977 DSM 44196
pdb|3R7K|C Chain C, Crystal Structure Of A Probable Acyl Coa Dehydrogenase
From Mycobacterium Abscessus Atcc 19977 DSM 44196
pdb|3R7K|D Chain D, Crystal Structure Of A Probable Acyl Coa Dehydrogenase
From Mycobacterium Abscessus Atcc 19977 DSM 44196
Length = 403
Score = 160 bits (405), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 101/329 (30%), Positives = 165/329 (50%), Gaps = 2/329 (0%)
Query: 6 LHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSN-LCINQLVRHGSPAQKD 64
L GI P+E + E I A GS G+ ++ + + + +GS A +
Sbjct: 74 LLGIGFPEEVGGSGGNAIDSALVTEAILAAGGSTGVCAALFTHGIALPHIAANGSDALIE 133
Query: 65 KYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVV 124
+Y+ ++G+ +G+L ++EP AGSDV ++ +A R Y++NG K + T+G A +
Sbjct: 134 RYVRPTLAGKMIGSLGVTEPGAGSDVANLRTRAVREGDTYVVNGAKTFITSGVRADFVTT 193
Query: 125 YAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQE 184
+T G G++ +I+K PGF +++LDK+G R SDT EL F + VP +N++G E
Sbjct: 194 AVRTG-GPGYGGVSLLVIDKNSPGFEVSRRLDKMGWRCSDTAELSFVDVRVPADNLVGAE 252
Query: 185 GKGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADM 244
G +M ERL +A LD+ + R+RE FGRPL Q I+ K A+M
Sbjct: 253 NSGFLQIMQQFQAERLGIAVQAYATAGRALDLAKSWARERETFGRPLTGRQIIRHKLAEM 312
Query: 245 YTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYA 304
+ + +Y +V + G+ + + A V +A+Q GG GY+ E
Sbjct: 313 ARQVDVACTYTRAVMQRWLAGEDVVAEVSMAKNTAVYACDYVVNEAVQIFGGMGYMRESE 372
Query: 305 TGRLLRDAKLYEIGAGTSEIRRMIIGRAL 333
R RD ++ IG GT+EI +I + +
Sbjct: 373 IERHYRDCRILGIGGGTNEIMNEVIAKRI 401
>pdb|3OIB|A Chain A, Crystal Structure Of A Putative Acyl-Coa Dehydrogenase
From Mycobacterium Smegmatis, Iodide Soak
pdb|3OIB|B Chain B, Crystal Structure Of A Putative Acyl-Coa Dehydrogenase
From Mycobacterium Smegmatis, Iodide Soak
pdb|3P4T|A Chain A, Crystal Structure Of A Putative Acyl-Coa Dehydrogenase
From Mycobacterium Smegmatis
pdb|3P4T|B Chain B, Crystal Structure Of A Putative Acyl-Coa Dehydrogenase
From Mycobacterium Smegmatis
Length = 403
Score = 160 bits (405), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 96/286 (33%), Positives = 145/286 (50%), Gaps = 2/286 (0%)
Query: 49 LCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIING 108
+ + ++ G D Y+ + GE +GALA++EP GSDV ++ +AD Y+ING
Sbjct: 115 IAVPHMIASGDQRLIDTYVRPTLRGEKIGALAITEPGGGSDVGHLRTRADLDGDHYVING 174
Query: 109 NKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCEL 168
K + T+G A +V A+T G+ G++ +++KG PGF +KLDK+G R SDT EL
Sbjct: 175 AKTYITSGVRADYVVTAARTG-GPGAGGVSLIVVDKGTPGFEVTRKLDKMGWRSSDTAEL 233
Query: 169 VFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFG 228
+ + VP N++G E G + + ER+ LA Q CLD+ + + R R+ FG
Sbjct: 234 SYTDVRVPVANLVGSENTGFAQIAAAFVAERVGLATQAYAGAQRCLDLTVEWCRNRDTFG 293
Query: 229 RPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVD-PKDCAGVILCAAERATQVT 287
RPL Q +Q A M + +R Y V G+ + + A E V
Sbjct: 294 RPLISRQAVQNTLAGMARRIDVARVYTRHVVERQLAGETNLIAEVCFAKNTAVEAGEWVA 353
Query: 288 LQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRAL 333
QA+Q GG GY+ E R RD ++ IG GT+EI + + L
Sbjct: 354 NQAVQLFGGMGYMAESEVERQYRDMRILGIGGGTTEILTSLAAKTL 399
>pdb|3SF6|A Chain A, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Mycobacterium Smegmatis
Length = 403
Score = 158 bits (400), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 95/286 (33%), Positives = 140/286 (48%), Gaps = 6/286 (2%)
Query: 48 NLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIIN 107
+L + + GS QKD++LP + SG +G ++EP+ GSD GM+ +A R +I+
Sbjct: 117 SLAMYAIHAFGSDEQKDQWLPDMASGHRIGCFGLTEPDHGSDPAGMRTRATRSGDDWILT 176
Query: 108 GNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCE 167
G KMW TNG VA VV+A+TD +GI F++ PGF+ K+ +R S T E
Sbjct: 177 GTKMWITNGSVADVAVVWARTD-----EGIRGFVVPTDTPGFTANTIKSKMSLRASVTSE 231
Query: 168 LVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQF 227
LV + +P+ L + + L+ R + G LG + CL+ L Y REQF
Sbjct: 232 LVLDGVRLPDSARL-PGATSLGAPLRCLNEARFGIVFGALGAARDCLETALAYACSREQF 290
Query: 228 GRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVT 287
RP+G FQ Q K ADM + R D G++ P+ + L A ++
Sbjct: 291 DRPIGGFQLTQQKLADMTLEYGKGFLLALHLGRQKDAGELAPEQVSLGKLNNVREAIEIA 350
Query: 288 LQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRAL 333
A LG +G EY R + + GTSE+ +IIG+AL
Sbjct: 351 RTARTVLGASGITGEYPVMRHANNLESVLTYEGTSEMHTLIIGQAL 396
>pdb|3SWO|A Chain A, Crystal Structure Of A Glutaryl-Coa Dehydrogenase From
Mycobacterium Smegmatis In Complex With Fadh2
pdb|3SWO|B Chain B, Crystal Structure Of A Glutaryl-Coa Dehydrogenase From
Mycobacterium Smegmatis In Complex With Fadh2
pdb|3SWO|C Chain C, Crystal Structure Of A Glutaryl-Coa Dehydrogenase From
Mycobacterium Smegmatis In Complex With Fadh2
pdb|3SWO|D Chain D, Crystal Structure Of A Glutaryl-Coa Dehydrogenase From
Mycobacterium Smegmatis In Complex With Fadh2
Length = 399
Score = 149 bits (377), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 91/286 (31%), Positives = 144/286 (50%), Gaps = 6/286 (2%)
Query: 48 NLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIIN 107
+L + + R+GS QK+++LP+L +G+ +G ++EP+ GS+ GM+ +A R +I+N
Sbjct: 112 SLSMFSIYRYGSEEQKNEWLPRLAAGDAIGCFGLTEPDFGSNPAGMRTRARRDGSDWILN 171
Query: 108 GNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCE 167
G KMW TNG +A V+A+TD GI F++ PGF+ + KL +R S T E
Sbjct: 172 GTKMWITNGNLADVATVWAQTD-----DGIRGFLVPTDTPGFTANEIHRKLSLRASVTSE 226
Query: 168 LVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQF 227
LV +N +P L +G+ +S L+ R + G LG + L+ + Y + RE F
Sbjct: 227 LVLDNVRLPASAQL-PLAEGLSAPLSCLNEARFGIVFGALGAARDSLETTIAYTQSREVF 285
Query: 228 GRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVT 287
+PL +Q Q K A+M L + R D V P+ + L A +
Sbjct: 286 DKPLSNYQLTQEKLANMTVELGKGMLLAIHLGRIKDAEGVRPEQISLGKLNNVREAIAIA 345
Query: 288 LQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRAL 333
+ LGG+G EY+ R + + GTSE+ + IG+AL
Sbjct: 346 RECRTLLGGSGITLEYSPLRHANNLESVLTYEGTSEMHLLSIGKAL 391
>pdb|1SIR|A Chain A, The Crystal Structure And Mechanism Of Human Glutaryl-Coa
Dehydrogenase
pdb|2R0N|A Chain A, The Effect Of A Glu370asp Mutation In Glutaryl-Coa
Dehydrogenase On Proton Transfer To The Dienolate
Intermediate
Length = 394
Score = 148 bits (374), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 100/306 (32%), Positives = 146/306 (47%), Gaps = 9/306 (2%)
Query: 31 EISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDV 90
E+ R + S+L ++ + +GS Q+ KYLP+L GE +G ++EPN+GSD
Sbjct: 85 ELERVDSGYRSAMSVQSSLVMHPIYAYGSEEQRQKYLPQLAKGELLGCFGLTEPNSGSDP 144
Query: 91 VGMKCKA--DRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPG 148
M+ +A + + Y +NG K W TN P+A VV+A+ + I F++EKGM G
Sbjct: 145 SSMETRAHYNSSNKSYTLNGTKTWITNSPMADLFVVWARCE----DGCIRGFLLEKGMRG 200
Query: 149 FSTAQKLDKLGMRGSDTCELVFENCFVPNENVL-GQEGKGVYVMMSGLDLERLVLAAGPL 207
S + K +R S T ++ + VP ENVL G G L+ R +A G L
Sbjct: 201 LSAPRIQGKFSLRASATGMIIMDGVEVPEENVLPGASSLG--GPFGCLNNARYGIAWGVL 258
Query: 208 GIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKV 267
G + CL Y R QFG PL Q IQ K ADM T + + R D K
Sbjct: 259 GASEFCLHTARQYALDRMQFGVPLARNQLIQKKLADMLTEITLGLHACLQLGRLKDQDKA 318
Query: 268 DPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRM 327
P+ + + +A + QA LGGNG +EY R + + GT +I +
Sbjct: 319 APEMVSLLKRNNCGKALDIARQARDMLGGNGISDEYHVIRHAMNLEAVNTYEGTHDIHAL 378
Query: 328 IIGRAL 333
I+GRA+
Sbjct: 379 ILGRAI 384
>pdb|1SIQ|A Chain A, The Crystal Structure And Mechanism Of Human Glutaryl-Coa
Dehydrogenase
Length = 392
Score = 148 bits (374), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 100/306 (32%), Positives = 146/306 (47%), Gaps = 9/306 (2%)
Query: 31 EISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDV 90
E+ R + S+L ++ + +GS Q+ KYLP+L GE +G ++EPN+GSD
Sbjct: 83 ELERVDSGYRSAMSVQSSLVMHPIYAYGSEEQRQKYLPQLAKGELLGCFGLTEPNSGSDP 142
Query: 91 VGMKCKA--DRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPG 148
M+ +A + + Y +NG K W TN P+A VV+A+ + I F++EKGM G
Sbjct: 143 SSMETRAHYNSSNKSYTLNGTKTWITNSPMADLFVVWARCE----DGCIRGFLLEKGMRG 198
Query: 149 FSTAQKLDKLGMRGSDTCELVFENCFVPNENVL-GQEGKGVYVMMSGLDLERLVLAAGPL 207
S + K +R S T ++ + VP ENVL G G L+ R +A G L
Sbjct: 199 LSAPRIQGKFSLRASATGMIIMDGVEVPEENVLPGASSLG--GPFGCLNNARYGIAWGVL 256
Query: 208 GIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKV 267
G + CL Y R QFG PL Q IQ K ADM T + + R D K
Sbjct: 257 GASEFCLHTARQYALDRMQFGVPLARNQLIQKKLADMLTEITLGLHACLQLGRLKDQDKA 316
Query: 268 DPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRM 327
P+ + + +A + QA LGGNG +EY R + + GT +I +
Sbjct: 317 APEMVSLLKRNNCGKALDIARQARDMLGGNGISDEYHVIRHAMNLEAVNTYEGTHDIHAL 376
Query: 328 IIGRAL 333
I+GRA+
Sbjct: 377 ILGRAI 382
>pdb|2R0M|A Chain A, The Effect Of A Glu370asp Mutation In Glutaryl-Coa
Dehydrogenase On Proton Transfer To The Dienolate
Intermediate
Length = 394
Score = 147 bits (372), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 100/306 (32%), Positives = 146/306 (47%), Gaps = 9/306 (2%)
Query: 31 EISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDV 90
E+ R + S+L ++ + +GS Q+ KYLP+L GE +G ++EPN+GSD
Sbjct: 85 ELERVDSGYRSAMSVQSSLVMHPIYAYGSEEQRQKYLPQLAKGELLGCFGLTEPNSGSDP 144
Query: 91 VGMKCKA--DRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPG 148
M+ +A + + Y +NG K W TN P+A VV+A+ + I F++EKGM G
Sbjct: 145 SSMETRAHYNSSNKSYTLNGTKTWITNSPMADLFVVWARCE----DGCIRGFLLEKGMRG 200
Query: 149 FSTAQKLDKLGMRGSDTCELVFENCFVPNENVL-GQEGKGVYVMMSGLDLERLVLAAGPL 207
S + K +R S T ++ + VP ENVL G G L+ R +A G L
Sbjct: 201 LSAPRIQGKFSLRASATGMIIMDGVEVPEENVLPGASSLG--GPFGCLNNARYGIAWGVL 258
Query: 208 GIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKV 267
G + CL Y R QFG PL Q IQ K ADM T + + R D K
Sbjct: 259 GASEFCLHTARQYALDRMQFGVPLARNQLIQKKLADMLTEITLGLHACLQLGRLKDQDKA 318
Query: 268 DPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRM 327
P+ + + +A + QA LGGNG +EY R + + GT +I +
Sbjct: 319 APEMVSLLKRNNCGKALDIARQARDMLGGNGISDEYHVIRHAMNLEAVNTYDGTHDIHAL 378
Query: 328 IIGRAL 333
I+GRA+
Sbjct: 379 ILGRAI 384
>pdb|2IX6|A Chain A, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4
pdb|2IX6|B Chain B, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4
pdb|2IX6|C Chain C, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4
pdb|2IX6|D Chain D, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4
pdb|2IX6|E Chain E, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4
pdb|2IX6|F Chain F, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4
Length = 449
Score = 147 bits (371), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 91/308 (29%), Positives = 153/308 (49%), Gaps = 6/308 (1%)
Query: 25 HCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEP 84
+ IA EI+R S HS+L + + GS AQK+KYLP L V A++EP
Sbjct: 118 NAIATAEIARVDASCSTFILVHSSLGMLTIALCGSEAQKEKYLPSLAQLNTVACWALTEP 177
Query: 85 NAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEK 144
+ GSD G+ A +V+GG+ ING K W N A L+++A+ + I FI++K
Sbjct: 178 DNGSDASGLGTTATKVEGGWKINGQKRWIGNSTFADLLIIFARNTT---TNQINGFIVKK 234
Query: 145 GMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSG-LDLERLVLA 203
PG + +K+G+R +++ +N FVP+E+ L G + S L + R+++A
Sbjct: 235 DAPGLKATKIPNKIGLRMVQNGDILLQNVFVPDEDRL--PGVNSFQDTSKVLAVSRVMVA 292
Query: 204 AGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCD 263
P+GI D+ Y+++R+QFG PL FQ Q K M +Q+ + + + +
Sbjct: 293 WQPIGISMGIYDMCHRYLKERKQFGAPLAAFQLNQQKLVQMLGNVQAMFLMGWRLCKLYE 352
Query: 264 NGKVDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSE 323
G++ P + + +A + + LGGNG + ++ + D + GT +
Sbjct: 353 TGQMTPGQASLGKAWISSKARETASLGRELLGGNGILADFLVAKAFCDLEPIYTYEGTYD 412
Query: 324 IRRMIIGR 331
I ++ GR
Sbjct: 413 INTLVTGR 420
>pdb|2IX5|A Chain A, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4 In Complex With Acetoacetyl-Coa
pdb|2IX5|B Chain B, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4 In Complex With Acetoacetyl-Coa
pdb|2IX5|C Chain C, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4 In Complex With Acetoacetyl-Coa
pdb|2IX5|D Chain D, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4 In Complex With Acetoacetyl-Coa
Length = 436
Score = 147 bits (370), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 91/308 (29%), Positives = 153/308 (49%), Gaps = 6/308 (1%)
Query: 25 HCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEP 84
+ IA EI+R S HS+L + + GS AQK+KYLP L V A++EP
Sbjct: 118 NAIATAEIARVDASCSTFILVHSSLGMLTIALCGSEAQKEKYLPSLAQLNTVACWALTEP 177
Query: 85 NAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEK 144
+ GSD G+ A +V+GG+ ING K W N A L+++A+ + I FI++K
Sbjct: 178 DNGSDASGLGTTATKVEGGWKINGQKRWIGNSTFADLLIIFARNTT---TNQINGFIVKK 234
Query: 145 GMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSG-LDLERLVLA 203
PG + +K+G+R +++ +N FVP+E+ L G + S L + R+++A
Sbjct: 235 DAPGLKATKIPNKIGLRMVQNGDILLQNVFVPDEDRL--PGVNSFQDTSKVLAVSRVMVA 292
Query: 204 AGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCD 263
P+GI D+ Y+++R+QFG PL FQ Q K M +Q+ + + + +
Sbjct: 293 WQPIGISMGIYDMCHRYLKERKQFGAPLAAFQLNQQKLVQMLGNVQAMFLMGWRLCKLYE 352
Query: 264 NGKVDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSE 323
G++ P + + +A + + LGGNG + ++ + D + GT +
Sbjct: 353 TGQMTPGQASLGKAWISSKARETASLGRELLGGNGILADFLVAKAFCDLEPIYTYEGTYD 412
Query: 324 IRRMIIGR 331
I ++ GR
Sbjct: 413 INTLVTGR 420
>pdb|2EBA|A Chain A, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|C Chain C, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|D Chain D, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|E Chain E, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|F Chain F, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|G Chain G, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|H Chain H, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|I Chain I, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
Length = 385
Score = 144 bits (363), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 95/327 (29%), Positives = 153/327 (46%), Gaps = 6/327 (1%)
Query: 8 GITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYL 67
G T P E + + E+ R + S+L + + +GS QK ++L
Sbjct: 58 GPTLPPEYGGAGVSSAAYGLICYELERVDSGLRSFVSVQSSLVMYPIYAYGSEEQKREFL 117
Query: 68 PKLISGEHVGALAMSEPNAGSDVVG-MKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYA 126
PKL GE VG ++EP+ GSD G MK +A R +++NG KMW TNG +A V++A
Sbjct: 118 PKLARGEMVGCFGLTEPDGGSDPYGNMKTRARREGDTWVLNGTKMWITNGNLAHLAVIWA 177
Query: 127 KTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGK 186
K + + F++ PGF + K+ +R S T ELV E VP E++ +
Sbjct: 178 KDE----GGEVLGFLVPTDTPGFQAREVKRKMSLRASVTSELVLEEVRVP-ESLRLPKAL 232
Query: 187 GVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYT 246
G+ +S L R +A G +G ++A + + + + R FG PL + Q +Q K A+M
Sbjct: 233 GLKAPLSCLTQARFGIAWGAMGALEAVYEEAVAFAKSRSTFGEPLAKKQLVQAKLAEMLA 292
Query: 247 ALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATG 306
+ +AR D GK+ P + +A Q A LGG+G EY
Sbjct: 293 WHTEGLLLAWRLARLKDEGKLTPAQVSLAKRQNVWKALQAARMARDILGGSGITLEYHAI 352
Query: 307 RLLRDAKLYEIGAGTSEIRRMIIGRAL 333
R + + + GT ++ +++GR +
Sbjct: 353 RHMLNLETVYTYEGTHDVHTLVLGREI 379
>pdb|1R2J|A Chain A, Fkbi For Biosynthesis Of Methoxymalonyl Extender Unit Of
Fk520 Polyketide Immunosuppresant
Length = 366
Score = 112 bits (279), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 89/284 (31%), Positives = 139/284 (48%), Gaps = 13/284 (4%)
Query: 56 RHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGY-IINGNKMWCT 114
R G Q+ +L +L SG+ + A+ SE AGSD+ M+ + R+DG +++G+K+W T
Sbjct: 87 RLGDAGQRATFLKELTSGK-LAAVGFSERQAGSDLSAMRTRV-RLDGDTAVVDGHKVWTT 144
Query: 115 NGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCF 174
A LVV+ + +G+ ++ PG + G R + +L +
Sbjct: 145 AAAYADHLVVFGLQEDGSGA----VVVVPADTPGVRVERVPKPSGCRAAGHADLHLDQVR 200
Query: 175 VPNENVLGQEGKGVYVMMSG-LDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGE 233
VP VL G + ++++ L R +A G +GI++AC + + R REQFGRPLG+
Sbjct: 201 VPAGAVLAGSGASLPMLVAASLAYGRKSVAWGCVGILRACRTAAVAHARTREQFGRPLGD 260
Query: 234 FQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILC---AAERATQVTLQA 290
Q + G AD++TA Q + + D G P+ IL AAERA A
Sbjct: 261 HQLVAGHIADLWTAEQIAARVCEYASDHWDEGS--PEMVPATILAKHVAAERAAAGAATA 318
Query: 291 IQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRALL 334
Q L G + R RDAKL EI G+SE+ R+++ + L
Sbjct: 319 AQVLASAGAREGHVVERAYRDAKLMEIIEGSSEMCRVMLAQHAL 362
>pdb|3DJL|A Chain A, Crystal Structure Of Alkylation Response Protein E. Coli
Aidb
pdb|3U33|A Chain A, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|B Chain B, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|C Chain C, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|D Chain D, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|E Chain E, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|F Chain F, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|G Chain G, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|H Chain H, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|I Chain I, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|J Chain J, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|K Chain K, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|L Chain L, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
Length = 541
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 80/297 (26%), Positives = 140/297 (47%), Gaps = 31/297 (10%)
Query: 59 SPAQKDKYLPKLISGEHVGAL----AMSEPNAGSDVVGMKCKADRV-DGGYIINGNKMWC 113
+P D+Y L+ G L M+E GSDV+ +A+R+ DG Y + G+K W
Sbjct: 158 TPLLSDRYDSHLLPGGQKRGLLIGMGMTEKQGGSDVMSNTTRAERLEDGSYRLVGHK-WF 216
Query: 114 TNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMP-GFSTAQKL----DKLGMRGSDTCEL 168
+ P + +V A+T + G++ F + + +P G A +L DKLG R + +CE+
Sbjct: 217 FSVPQSDAHLVLAQT-----AGGLSCFFVPRFLPDGQRNAIRLERLKDKLGNRSNASCEV 271
Query: 169 VFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFG 228
F++ +LG EG+G+ +++ + R A G +M+ + + + QR FG
Sbjct: 272 EFQDAI---GWLLGLEGEGIRLILKMGGMTRFDCALGSHAMMRRAFSLAIYHAHQRHVFG 328
Query: 229 RPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKD---------CAGVILCA 279
PL + ++ + M L+ + ++ +AR D + D K+ A ++C
Sbjct: 329 NPLIQQPLMRHVLSRMALQLEGQTALLFRLARAWDR-RADAKEALWARLFTPAAKFVIC- 386
Query: 280 AERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRALLKQ 336
+R +A++ LGG GY E RL R+ + I G+ I + + R L KQ
Sbjct: 387 -KRGMPFVAEAMEVLGGIGYCEESELPRLYREMPVNSIWEGSGNIMCLDVLRVLNKQ 442
>pdb|2WBI|A Chain A, Crystal Structure Of Human Acyl-Coa Dehydrogenase 11
pdb|2WBI|B Chain B, Crystal Structure Of Human Acyl-Coa Dehydrogenase 11
Length = 428
Score = 82.0 bits (201), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 70/291 (24%), Positives = 118/291 (40%), Gaps = 10/291 (3%)
Query: 57 HGSPAQKDKYLPKLISGEHVGALAMSEPN-AGSDVVGMKCKADRVDGGYIINGNKMWCTN 115
+GS QK ++L L+ G M+EP+ A SD ++C R + Y+ING K W +
Sbjct: 130 YGSEEQKKQWLEPLLQGNITSCFCMTEPDVASSDATNIECSIQRDEDSYVINGKKWWSSG 189
Query: 116 G--PVAQTLVVYAKTDIKAGS--KGITAFIIEKGMPGFSTAQKLDKLGMRGS---DTCEL 168
P + +V +T + S K + ++ PG + L G + E+
Sbjct: 190 AGNPKCKIAIVLGRTQNTSLSRHKQHSMILVPMNTPGVKIIRPLSVFGYTDNFHGGHFEI 249
Query: 169 VFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFG 228
F VP N++ EG+G + L R+ +G+ + L ++ QR F
Sbjct: 250 HFNQVRVPATNLILGEGRGFEISQGRLGPGRIHHCMRTVGLAERALQIMCERATQRIAFK 309
Query: 229 RPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDN-GKVDPKDCAGVILCAAERA-TQV 286
+ L + + A+ A++ R A D G K +I AA RA +++
Sbjct: 310 KKLYAHEVVAHWIAESRIAIEKIRLLTLKAAHSMDTLGSAGAKKEIAMIKVAAPRAVSKI 369
Query: 287 TLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRALLKQQ 337
AIQ GG G +Y + ++ + G E+ I L+ Q
Sbjct: 370 VDWAIQVCGGAGVSQDYPLANMYAITRVLRLADGPDEVHLSAIATMELRDQ 420
>pdb|4HR3|A Chain A, Structure Of A Putative Acyl-Coa Dehydrogenase From
Mycobacterium Abscessus
Length = 415
Score = 79.0 bits (193), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 76/291 (26%), Positives = 118/291 (40%), Gaps = 8/291 (2%)
Query: 54 LVRHGSPAQKDKYLPKLISGEHVGALAMSEPN-AGSDVVGMKCKADRVDGGYIINGNKMW 112
L R+GS QK+ +L L+ G+ A M+EP+ A SD M A +ING K W
Sbjct: 121 LHRYGSQEQKEVWLEPLLEGDIRSAFCMTEPDVASSDATNMAATAVVEGDEVVINGRKWW 180
Query: 113 CT--NGPVAQTLVVYAKTDIKAGSKGITAFI-IEKGMPGFSTAQKLDKLGMRGSDTCELV 169
T P + ++ TD A + + + PG + + L +G V
Sbjct: 181 STGVGHPDCKVIIFMGLTDPNAHRYARHSMVLVPMDTPGITVERMLPTMGFYDEPGGHGV 240
Query: 170 --FENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQF 227
F+N +P + + GKG + L R+ A +G+ + L+ R F
Sbjct: 241 VSFDNVRLPADAFIAGPGKGFEIAQGRLGPGRVHHAMRLIGLAEVALEHACRRGLDRTAF 300
Query: 228 GRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDN-GKVDPKDCAGVILCAAER-ATQ 285
G+PL + + AD A+ +R V A D G + I AA A Q
Sbjct: 301 GKPLVNLGGNRERIADARIAINQTRLLVLHAAWLLDTVGIMGALSAVSEIKVAAPNMAQQ 360
Query: 286 VTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRALLKQ 336
V AIQ GG G N++ +A+ + G E+ R ++ R L +
Sbjct: 361 VIDMAIQIHGGGGLSNDFPLAAAWVNARALRLADGPDEVHRGVVARIELAK 411
>pdb|3M9V|A Chain A, X-Ray Structure Of A Kijd3 In Complex With Dtdp
Length = 439
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/222 (22%), Positives = 102/222 (45%), Gaps = 11/222 (4%)
Query: 102 GGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMR 161
GG++++G K + PV V+ A+TD G + + ++ + PGF+ D LGMR
Sbjct: 161 GGWLLSGRKTLVSMAPVGTHFVINARTDGTDGPPRLASPVVTRDTPGFTVLDNWDGLGMR 220
Query: 162 GSDTCELVFENCFVPNENVLGQEGKGVY--VMMSGLDLERLVLAAGPLGIMQACLDVVLP 219
S T ++VF++C +P ++VL ++ G +++G + + + +G+ QA D +
Sbjct: 221 ASGTVDIVFDDCPIPADHVLMRDPVGARNDAVLAGQTVSSVSVLGVYVGVAQAAYDTAVA 280
Query: 220 YVRQREQFGRPLGEFQFIQGKTADMY-------TALQSSRSYVYSVARDCDN-GKVDPKD 271
+ +R + + + + +Y +AL ++ + ++ D D G+ +
Sbjct: 281 ALERRPEPPQ-AAALTLVAEIDSRLYALRATAGSALTAADALSADLSGDMDERGRQMMRH 339
Query: 272 CAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAK 313
L A ++ + +GG Y + RLLRD +
Sbjct: 340 FQCAKLAVNRLAPEIVSDCLSLVGGASYTAGHPLARLLRDVQ 381
>pdb|4DOY|A Chain A, Crystal Structure Of Dibenzothiophene Desulfurization
Enzyme C
pdb|4DOY|B Chain B, Crystal Structure Of Dibenzothiophene Desulfurization
Enzyme C
pdb|4DOY|C Chain C, Crystal Structure Of Dibenzothiophene Desulfurization
Enzyme C
pdb|4DOY|D Chain D, Crystal Structure Of Dibenzothiophene Desulfurization
Enzyme C
pdb|4DOY|E Chain E, Crystal Structure Of Dibenzothiophene Desulfurization
Enzyme C
pdb|4DOY|F Chain F, Crystal Structure Of Dibenzothiophene Desulfurization
Enzyme C
pdb|4DOY|G Chain G, Crystal Structure Of Dibenzothiophene Desulfurization
Enzyme C
pdb|4DOY|H Chain H, Crystal Structure Of Dibenzothiophene Desulfurization
Enzyme C
Length = 437
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 81/323 (25%), Positives = 127/323 (39%), Gaps = 46/323 (14%)
Query: 29 MEEISRASGSVGLSYGAH-SNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAG 87
+ EI+ A GS+G +G H +N + +L+ GS Q++ ++ A SE N
Sbjct: 100 VREIAAADGSLGHLFGYHLTNAPMIELI--GSQEQEEHLYTQIAQNNWWTGNASSENN-- 155
Query: 88 SDVVGMKCKADRV-DGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKG-ITAFIIEKG 145
S V+ K A DGGY++NG K +C+ + L V+ + +G I A I
Sbjct: 156 SHVLDWKVSATPTEDGGYVLNGTKHFCSGAKGSDLLFVFGVVQDDSPQQGAIIAAAIPTS 215
Query: 146 MPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSG------LDLER 199
G + +GMR +D+ F N V + VLG V + + +
Sbjct: 216 RAGVTPNDDWAAIGMRQTDSGSTDFHNVKVEPDEVLGAPNAFVLAFIQSERGSLFAPIAQ 275
Query: 200 LVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSY-VYSV 258
L+ A LGI LD Y R + + P G IQ T D YT RSY +++
Sbjct: 276 LIFANVYLGIAHGALDAAREYTRTQARPWTPAG----IQQATEDPYTI----RSYGEFTI 327
Query: 259 ARD----------------CDNGK-VDPKD-------CAGVILCAAERATQVTLQAIQCL 294
A D G + P+D +GV A A ++ + +
Sbjct: 328 ALQGADAAAREAAHLLQTVWDKGDALTPEDRGELMVKVSGVKALATNAALNISSGVFEVI 387
Query: 295 GGNGYVNEYATGRLLRDAKLYEI 317
G G Y R R+ + + +
Sbjct: 388 GARGTHPRYGFDRFWRNVRTHSL 410
>pdb|3MXL|A Chain A, Crystal Structure Of Nitrososynthase From Micromonospora
Carbonacea Var. Africana
pdb|3MXL|B Chain B, Crystal Structure Of Nitrososynthase From Micromonospora
Carbonacea Var. Africana
pdb|3MXL|C Chain C, Crystal Structure Of Nitrososynthase From Micromonospora
Carbonacea Var. Africana
pdb|3MXL|D Chain D, Crystal Structure Of Nitrososynthase From Micromonospora
Carbonacea Var. Africana
Length = 395
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 70/307 (22%), Positives = 126/307 (41%), Gaps = 29/307 (9%)
Query: 26 CIAMEEISRASGSVGLSYGAH--SNLCINQLVRHGSP---AQKDKYLPKLISGEHVGALA 80
A+ ++ A S L++ L + +HG+P A ++ L + GE A
Sbjct: 74 ATALMRLAEADASTALAWHVQLSRGLTLTYEWQHGTPPVRAMAERLLRAMAEGEAAVCGA 133
Query: 81 MSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAF 140
+ + V + +D GG++++G K+ + P+A V+A+ GS +
Sbjct: 134 LKDAPG----VVTELHSDGA-GGWLLSGRKVLVSMAPIATHFFVHAQRRDDDGSVFLAVP 188
Query: 141 IIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVL--GQEGKGVYVMMSGLDLE 198
++ + PG + D LGMR S T E+VF+ C V + +L G G +++G +
Sbjct: 189 VVHRDAPGLTVLDNWDGLGMRASGTLEVVFDRCPVRADELLERGPVGARRDAVLAGQTVS 248
Query: 199 RLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSV 258
+ + GI QA D+ + + R G P + + A + T L + R+ V +
Sbjct: 249 SITMLGIYAGIAQAARDIAVGFCAGRG--GEPRAGARAL---VAGLDTRLYALRTTVGAA 303
Query: 259 ARDCDNGKV----DPKDCAGVI--------LCAAERATQVTLQAIQCLGGNGYVNEYATG 306
+ D V DP + + + E A V + +GG Y +
Sbjct: 304 LTNADAASVDLSGDPDERGRRMMTPFQYAKMTVNELAPAVVDDCLSLVGGLAYTAGHPLS 363
Query: 307 RLLRDAK 313
RL RD +
Sbjct: 364 RLYRDVR 370
>pdb|3MKH|A Chain A, Podospora Anserina Nitroalkane Oxidase
pdb|3MKH|B Chain B, Podospora Anserina Nitroalkane Oxidase
pdb|3MKH|C Chain C, Podospora Anserina Nitroalkane Oxidase
pdb|3MKH|D Chain D, Podospora Anserina Nitroalkane Oxidase
Length = 438
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 72/306 (23%), Positives = 124/306 (40%), Gaps = 34/306 (11%)
Query: 62 QKDKYLPKLISGE--HVGALAMSEPNAGSDVV-----GMKCKADRVDGG-YIINGNKMWC 113
Q ++L +SGE + +L SEP ++ + G + A R++G ++ING KMW
Sbjct: 113 QHAEFLAPFLSGEGSPLASLVFSEPGGVANALEKGAPGFQTTA-RLEGDEWVINGEKMWA 171
Query: 114 TNGP--------VAQTLVVYAKTDIKAGSKGITAFII---------EKGMPGFSTAQKLD 156
TN +A + A T ++ G +I G F + +
Sbjct: 172 TNCAGWDFKGCDLACVVCRDATTPLEEGQDPENKVMIILVTRADLDRNGEGSFEVLRHVA 231
Query: 157 KLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACLDV 216
G + + N VP +NVL G+G V D +++ A +G+M+A D
Sbjct: 232 TPGHTSVSGPHVRYTNVRVPTKNVLCPAGQGAKVAFGAFDGSAVLVGAMGVGLMRAAFDA 291
Query: 217 VLPYVRQREQFGR-PLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVD-----PK 270
L + ++ + G PL E Q + + +++R+ + A +NG D
Sbjct: 292 ALKFAKEDNRGGAVPLLERQAFADLLSGVKIQTEAARALTWKAAHAMENGPGDYDARREL 351
Query: 271 DCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEI-GAGTSEIRRMII 329
A + C +E A + I +G + Y + LL A + I G IRR +
Sbjct: 352 ALAAKVFC-SEAAVKACTDVINAVGISAYDLQRPFSDLLNTAVVLPIFDGGNVGIRRRHL 410
Query: 330 GRALLK 335
+ +LK
Sbjct: 411 QQLMLK 416
>pdb|2C0U|A Chain A, Crystal Structure Of A Covalent Complex Of Nitroalkane
Oxidase Trapped During Substrate Turnover
pdb|2C0U|B Chain B, Crystal Structure Of A Covalent Complex Of Nitroalkane
Oxidase Trapped During Substrate Turnover
pdb|2C0U|C Chain C, Crystal Structure Of A Covalent Complex Of Nitroalkane
Oxidase Trapped During Substrate Turnover
pdb|2C0U|D Chain D, Crystal Structure Of A Covalent Complex Of Nitroalkane
Oxidase Trapped During Substrate Turnover
Length = 439
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 67/337 (19%), Positives = 131/337 (38%), Gaps = 54/337 (16%)
Query: 27 IAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGE--HVGALAMSEP 84
I +EE+ + ++ A + L + ++ SP+ ++K+L ISGE + +L SEP
Sbjct: 78 IILEELFAVEPATSITIVA-TALGLXPVILCDSPSLQEKFLKPFISGEGEPLASLXHSEP 136
Query: 85 NAGSDVV-----GMKCKADRVDGGYIINGNKMWCTNG----------------------- 116
N ++ + G++ A +V ++I+G K+W +N
Sbjct: 137 NGTANWLQKGGPGLQTTARKVGNEWVISGEKLWPSNSGGWDYKGADLACVVCRVSDDPSK 196
Query: 117 -------PVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELV 169
P Q V+ + A +K I+ G P + G +
Sbjct: 197 PQDPNVDPATQIAVLLVTRETIANNKKDAYQIL--GEPELA--------GHITTSGPHTR 246
Query: 170 FENCFVPNENVLGQEG-KGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFG 228
F VP+EN+L G K ++ + ++ A +G +A + L + + + G
Sbjct: 247 FTEFHVPHENLLCTPGLKAQGLVETAFAXSAALVGAXAIGTARAAFEEALVFAKSDTRGG 306
Query: 229 -RPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDN----GKVDPKDCAGVILCAAERA 283
+ + E Q + K D L++SR V+ ++ KV + + + A
Sbjct: 307 SKHIIEHQSVADKLIDCKIRLETSRLLVWKAVTTLEDEALEWKVKLEXAXQTKIYTTDVA 366
Query: 284 TQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAG 320
+ + A + +G Y + + RLL + Y + G
Sbjct: 367 VECVIDAXKAVGXKSYAKDXSFPRLLNEVXCYPLFDG 403
>pdb|3D9D|A Chain A, Nitroalkane Oxidase: Mutant D402n Crystallized With
1-Nitrohexane
pdb|3D9D|B Chain B, Nitroalkane Oxidase: Mutant D402n Crystallized With
1-Nitrohexane
pdb|3D9D|C Chain C, Nitroalkane Oxidase: Mutant D402n Crystallized With
1-Nitrohexane
pdb|3D9D|D Chain D, Nitroalkane Oxidase: Mutant D402n Crystallized With
1-Nitrohexane
pdb|3D9E|A Chain A, Nitroalkane Oxidase: Active Site Mutant D402n Crystallized
With 1- Nitrooctane
pdb|3D9E|B Chain B, Nitroalkane Oxidase: Active Site Mutant D402n Crystallized
With 1- Nitrooctane
pdb|3D9E|C Chain C, Nitroalkane Oxidase: Active Site Mutant D402n Crystallized
With 1- Nitrooctane
pdb|3D9E|D Chain D, Nitroalkane Oxidase: Active Site Mutant D402n Crystallized
With 1- Nitrooctane
pdb|3FCJ|A Chain A, Nitroalkane Oxidase: Mutant402n Crystallized With
Nitroethane
pdb|3FCJ|B Chain B, Nitroalkane Oxidase: Mutant402n Crystallized With
Nitroethane
pdb|3FCJ|C Chain C, Nitroalkane Oxidase: Mutant402n Crystallized With
Nitroethane
pdb|3FCJ|D Chain D, Nitroalkane Oxidase: Mutant402n Crystallized With
Nitroethane
Length = 438
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 70/351 (19%), Positives = 139/351 (39%), Gaps = 55/351 (15%)
Query: 27 IAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGE--HVGALAMSEP 84
I +EE+ + ++ A + L + ++ SP+ ++K+L ISGE + +L SEP
Sbjct: 77 IILEELFAVEPATSITIVA-TALGLMPVILCDSPSLQEKFLKPFISGEGEPLASLMHSEP 135
Query: 85 NAGSDVV-----GMKCKADRVDGGYIINGNKMWCTNG----------------------- 116
N ++ + G++ A +V ++I+G K+W +N
Sbjct: 136 NGTANWLQKGGPGLQTTARKVGNEWVISGEKLWPSNSGGWDYKGADLACVVCRVSDDPSK 195
Query: 117 -------PVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELV 169
P Q V+ + A +K I+ G P + G +
Sbjct: 196 PQDPNVDPATQIAVLLVTRETIANNKKDAYQIL--GEPELA--------GHITTSGPHTR 245
Query: 170 FENCFVPNENVLGQEG-KGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFG 228
F VP+EN+L G K ++ + + ++ A +G +A + L + + + G
Sbjct: 246 FTEFHVPHENLLCTPGLKAQGLVETAFAMSAALVGAMAIGTARAAFEEALVFAKSDTRGG 305
Query: 229 -RPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDN----GKVDPKDCAGVILCAAERA 283
+ + E Q + K D L++SR V+ ++ KV + + + A
Sbjct: 306 SKHIIEHQSVADKLIDCKIRLETSRLLVWKAVTTLEDEALEWKVKLEMAMQTKIYTTDVA 365
Query: 284 TQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEI-GAGTSEIRRMIIGRAL 333
+ + A++ +G Y + + RLL + Y + G +RR + R +
Sbjct: 366 VECVIDAMKAVGMKSYAKDMSFPRLLNEVMCYPLFNGGNIGLRRRQMQRVM 416
>pdb|2REH|A Chain A, Mechanistic And Structural Analyses Of The Roles Of Arg409
And Asp402 In The Reaction Of The Flavoprotein
Nitroalkane Oxidase
pdb|2REH|B Chain B, Mechanistic And Structural Analyses Of The Roles Of Arg409
And Asp402 In The Reaction Of The Flavoprotein
Nitroalkane Oxidase
pdb|2REH|C Chain C, Mechanistic And Structural Analyses Of The Roles Of Arg409
And Asp402 In The Reaction Of The Flavoprotein
Nitroalkane Oxidase
pdb|2REH|D Chain D, Mechanistic And Structural Analyses Of The Roles Of Arg409
And Asp402 In The Reaction Of The Flavoprotein
Nitroalkane Oxidase
Length = 439
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 67/337 (19%), Positives = 133/337 (39%), Gaps = 54/337 (16%)
Query: 27 IAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGE--HVGALAMSEP 84
I +EE+ + ++ A + L + ++ SP+ ++K+L ISGE + +L SEP
Sbjct: 78 IILEELFAVEPATSITIVA-TALGLMPVILCDSPSLQEKFLKPFISGEGEPLASLMHSEP 136
Query: 85 NAGSDVV-----GMKCKADRVDGGYIINGNKMWCTNG----------------------- 116
N ++ + G++ A +V ++I+G K+W +N
Sbjct: 137 NGTANWLQKGGPGLQTTARKVGNEWVISGEKLWPSNSGGWDYKGADLACVVCRVSDDPSK 196
Query: 117 -------PVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELV 169
P Q V+ + A +K I+ G P + G +
Sbjct: 197 PQDPNVDPATQIAVLLVTRETIANNKKDAYQIL--GEPELA--------GHITTSGPHTR 246
Query: 170 FENCFVPNENVLGQEG-KGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFG 228
F VP+EN+L G K ++ + + ++ A +G +A + L + + + G
Sbjct: 247 FTEFHVPHENLLCTPGLKAQGLVETAFAMSAALVGAMAIGTARAAFEEALVFAKSDTRGG 306
Query: 229 -RPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDN----GKVDPKDCAGVILCAAERA 283
+ + E Q + K D L++SR V+ ++ KV + + + A
Sbjct: 307 SKHIIEHQSVADKLIDCKIRLETSRLLVWKAVTTLEDEALEWKVKLEMAMQTKIYTTDVA 366
Query: 284 TQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAG 320
+ + A++ +G Y + + RLL + Y + G
Sbjct: 367 VECVIDAMKAVGMKSYAKDMSFPRLLNEVMCYPLFEG 403
>pdb|2ZAF|A Chain A, Mechanistic And Structural Analyses Of The Roles Of Arg409
And Asp402 In The Reaction Of The Flavoprotein
Nitroalkane Oxidase
pdb|2ZAF|B Chain B, Mechanistic And Structural Analyses Of The Roles Of Arg409
And Asp402 In The Reaction Of The Flavoprotein
Nitroalkane Oxidase
pdb|2ZAF|C Chain C, Mechanistic And Structural Analyses Of The Roles Of Arg409
And Asp402 In The Reaction Of The Flavoprotein
Nitroalkane Oxidase
pdb|2ZAF|D Chain D, Mechanistic And Structural Analyses Of The Roles Of Arg409
And Asp402 In The Reaction Of The Flavoprotein
Nitroalkane Oxidase
Length = 439
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 67/337 (19%), Positives = 133/337 (39%), Gaps = 54/337 (16%)
Query: 27 IAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGE--HVGALAMSEP 84
I +EE+ + ++ A + L + ++ SP+ ++K+L ISGE + +L SEP
Sbjct: 78 IILEELFAVEPATSITIVA-TALGLMPVILCDSPSLQEKFLKPFISGEGEPLASLMHSEP 136
Query: 85 NAGSDVV-----GMKCKADRVDGGYIINGNKMWCTNG----------------------- 116
N ++ + G++ A +V ++I+G K+W +N
Sbjct: 137 NGTANWLQKGGPGLQTTARKVGNEWVISGEKLWPSNSGGWDYKGADLACVVCRVSDDPSK 196
Query: 117 -------PVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELV 169
P Q V+ + A +K I+ G P + G +
Sbjct: 197 PQDPNVDPATQIAVLLVTRETIANNKKDAYQIL--GEPELA--------GHITTSGPHTR 246
Query: 170 FENCFVPNENVLGQEG-KGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFG 228
F VP+EN+L G K ++ + + ++ A +G +A + L + + + G
Sbjct: 247 FTEFHVPHENLLCTPGLKAQGLVETAFAMSAALVGAMAIGTARAAFEEALVFAKSDTRGG 306
Query: 229 -RPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDN----GKVDPKDCAGVILCAAERA 283
+ + E Q + K D L++SR V+ ++ KV + + + A
Sbjct: 307 SKHIIEHQSVADKLIDCKIRLETSRLLVWKAVTTLEDEALEWKVKLEMAMQTKIYTTDVA 366
Query: 284 TQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAG 320
+ + A++ +G Y + + RLL + Y + G
Sbjct: 367 VECVIDAMKAVGMKSYAKDMSFPRLLNEVMCYPLFDG 403
>pdb|3D9G|A Chain A, Nitroalkane Oxidase: Wild Type Crystallized In A Trapped
State Forming A Cyanoadduct With Fad
pdb|3D9G|B Chain B, Nitroalkane Oxidase: Wild Type Crystallized In A Trapped
State Forming A Cyanoadduct With Fad
pdb|3D9G|C Chain C, Nitroalkane Oxidase: Wild Type Crystallized In A Trapped
State Forming A Cyanoadduct With Fad
pdb|3D9G|D Chain D, Nitroalkane Oxidase: Wild Type Crystallized In A Trapped
State Forming A Cyanoadduct With Fad
Length = 438
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 70/351 (19%), Positives = 139/351 (39%), Gaps = 55/351 (15%)
Query: 27 IAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGE--HVGALAMSEP 84
I +EE+ + ++ A + L + ++ SP+ ++K+L ISGE + +L SEP
Sbjct: 77 IILEELFAVEPATSITIVA-TALGLMPVILCDSPSLQEKFLKPFISGEGEPLASLMHSEP 135
Query: 85 NAGSDVV-----GMKCKADRVDGGYIINGNKMWCTNG----------------------- 116
N ++ + G++ A +V ++I+G K+W +N
Sbjct: 136 NGTANWLQKGGPGLQTTARKVGNEWVISGEKLWPSNSGGWDYKGADLACVVCRVSDDPSK 195
Query: 117 -------PVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELV 169
P Q V+ + A +K I+ G P + G +
Sbjct: 196 PQDPNVDPATQIAVLLVTRETIANNKKDAYQIL--GEPELA--------GHITTSGPHTR 245
Query: 170 FENCFVPNENVLGQEG-KGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFG 228
F VP+EN+L G K ++ + + ++ A +G +A + L + + + G
Sbjct: 246 FTEFHVPHENLLCTPGLKAQGLVETAFAMSAALVGAMAIGTARAAFEEALVFAKSDTRGG 305
Query: 229 -RPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDN----GKVDPKDCAGVILCAAERA 283
+ + E Q + K D L++SR V+ ++ KV + + + A
Sbjct: 306 SKHIIEHQSVADKLIDCKIRLETSRLLVWKAVTTLEDEALEWKVKLEMAMQTKIYTTDVA 365
Query: 284 TQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEI-GAGTSEIRRMIIGRAL 333
+ + A++ +G Y + + RLL + Y + G +RR + R +
Sbjct: 366 VECVIDAMKAVGMKSYAKDMSFPRLLNEVMCYPLFDGGNIGLRRRQMQRVM 416
>pdb|2C12|A Chain A, Crystal Structure Of Nitroalkane Oxidase In Complex With
Spermine, A Competitive Inhibitor
pdb|2C12|B Chain B, Crystal Structure Of Nitroalkane Oxidase In Complex With
Spermine, A Competitive Inhibitor
pdb|2C12|C Chain C, Crystal Structure Of Nitroalkane Oxidase In Complex With
Spermine, A Competitive Inhibitor
pdb|2C12|D Chain D, Crystal Structure Of Nitroalkane Oxidase In Complex With
Spermine, A Competitive Inhibitor
pdb|2C12|E Chain E, Crystal Structure Of Nitroalkane Oxidase In Complex With
Spermine, A Competitive Inhibitor
pdb|2C12|F Chain F, Crystal Structure Of Nitroalkane Oxidase In Complex With
Spermine, A Competitive Inhibitor
Length = 439
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 70/351 (19%), Positives = 139/351 (39%), Gaps = 55/351 (15%)
Query: 27 IAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGE--HVGALAMSEP 84
I +EE+ + ++ A + L + ++ SP+ ++K+L ISGE + +L SEP
Sbjct: 78 IILEELFAVEPATSITIVA-TALGLMPVILCDSPSLQEKFLKPFISGEGEPLASLMHSEP 136
Query: 85 NAGSDVV-----GMKCKADRVDGGYIINGNKMWCTNG----------------------- 116
N ++ + G++ A +V ++I+G K+W +N
Sbjct: 137 NGTANWLQKGGPGLQTTARKVGNEWVISGEKLWPSNSGGWDYKGADLACVVCRVSDDPSK 196
Query: 117 -------PVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELV 169
P Q V+ + A +K I+ G P + G +
Sbjct: 197 PQDPNVDPATQIAVLLVTRETIANNKKDAYQIL--GEPELA--------GHITTSGPHTR 246
Query: 170 FENCFVPNENVLGQEG-KGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFG 228
F VP+EN+L G K ++ + + ++ A +G +A + L + + + G
Sbjct: 247 FTEFHVPHENLLCTPGLKAQGLVETAFAMSAALVGAMAIGTARAAFEEALVFAKSDTRGG 306
Query: 229 -RPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDN----GKVDPKDCAGVILCAAERA 283
+ + E Q + K D L++SR V+ ++ KV + + + A
Sbjct: 307 SKHIIEHQSVADKLIDCKIRLETSRLLVWKAVTTLEDEALEWKVKLEMAMQTKIYTTDVA 366
Query: 284 TQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEI-GAGTSEIRRMIIGRAL 333
+ + A++ +G Y + + RLL + Y + G +RR + R +
Sbjct: 367 VECVIDAMKAVGMKSYAKDMSFPRLLNEVMCYPLFDGGNIGLRRRQMQRVM 417
>pdb|3D9F|A Chain A, Nitroalkane Oxidase: Active Site Mutant S276a Crystallized
With 1- Nitrohexane
pdb|3D9F|B Chain B, Nitroalkane Oxidase: Active Site Mutant S276a Crystallized
With 1- Nitrohexane
pdb|3D9F|C Chain C, Nitroalkane Oxidase: Active Site Mutant S276a Crystallized
With 1- Nitrohexane
pdb|3D9F|D Chain D, Nitroalkane Oxidase: Active Site Mutant S276a Crystallized
With 1- Nitrohexane
Length = 438
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 70/351 (19%), Positives = 139/351 (39%), Gaps = 55/351 (15%)
Query: 27 IAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGE--HVGALAMSEP 84
I +EE+ + ++ A + L + ++ SP+ ++K+L ISGE + +L SEP
Sbjct: 77 IILEELFAVEPATSITIVA-TALGLMPVILCDSPSLQEKFLKPFISGEGEPLASLMHSEP 135
Query: 85 NAGSDVV-----GMKCKADRVDGGYIINGNKMWCTNG----------------------- 116
N ++ + G++ A +V ++I+G K+W +N
Sbjct: 136 NGTANWLQKGGPGLQTTARKVGNEWVISGEKLWPSNSGGWDYKGADLACVVCRVSDDPSK 195
Query: 117 -------PVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELV 169
P Q V+ + A +K I+ G P + G +
Sbjct: 196 PQDPNVDPATQIAVLLVTRETIANNKKDAYQIL--GEPELA--------GHITTSGPHTR 245
Query: 170 FENCFVPNENVLGQEG-KGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFG 228
F VP+EN+L G K ++ + + ++ A +G +A + L + + + G
Sbjct: 246 FTEFHVPHENLLCTPGLKAQGLVETAFAMAAALVGAMAIGTARAAFEEALVFAKSDTRGG 305
Query: 229 -RPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDN----GKVDPKDCAGVILCAAERA 283
+ + E Q + K D L++SR V+ ++ KV + + + A
Sbjct: 306 SKHIIEHQSVADKLIDCKIRLETSRLLVWKAVTTLEDEALEWKVKLEMAMQTKIYTTDVA 365
Query: 284 TQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEI-GAGTSEIRRMIIGRAL 333
+ + A++ +G Y + + RLL + Y + G +RR + R +
Sbjct: 366 VECVIDAMKAVGMKSYAKDMSFPRLLNEVMCYPLFDGGNIGLRRRQMQRVM 416
>pdb|2FON|A Chain A, X-Ray Crystal Structure Of Leacx1, An Acyl-Coa Oxidase
From Lycopersicon Esculentum (Tomato)
pdb|2FON|B Chain B, X-Ray Crystal Structure Of Leacx1, An Acyl-Coa Oxidase
From Lycopersicon Esculentum (Tomato)
pdb|2FON|C Chain C, X-Ray Crystal Structure Of Leacx1, An Acyl-Coa Oxidase
From Lycopersicon Esculentum (Tomato)
Length = 683
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 56/228 (24%), Positives = 91/228 (39%), Gaps = 32/228 (14%)
Query: 46 HSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKA--DRVDGG 103
H + I + G+ Q++K+LP + +G A +E GS+V G++ A D
Sbjct: 121 HWGMFIPAIKGQGTDKQQEKWLPLAYKMQIIGCYAQTELGHGSNVQGLETTATFDPQTDE 180
Query: 104 YIIN-----GNKMWCTN-GPVAQTLVVYAKTDIKAGSKGITAFIIE-------KGMPGFS 150
++I+ +K W G V+ VVYA+ G+ FI++ K +PG +
Sbjct: 181 FVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGKDYGVNGFIVQLRSLEDHKPLPGVT 240
Query: 151 TAQKLDKLG---MRGSDTCELVFENCFVPNENVL------GQEGKGV------YVMMSGL 195
K G D L F++ +P + +L +EGK V ++ +
Sbjct: 241 VGDIGMKFGNGAYNSMDNGVLSFDHVRIPRDQMLMRVSQVTKEGKYVQSDIPRQLLYGTM 300
Query: 196 DLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLG--EFQFIQGKT 241
R + A M + + Y R QFG G E Q I KT
Sbjct: 301 VYVRQSIVADASLAMSRAVCIATRYSAVRRQFGSQNGGQETQVIDYKT 348
>pdb|2RFQ|A Chain A, Crystal Structure Of 3-Hsa Hydroxylase From Rhodococcus
Sp. Rha1
pdb|2RFQ|B Chain B, Crystal Structure Of 3-Hsa Hydroxylase From Rhodococcus
Sp. Rha1
pdb|2RFQ|C Chain C, Crystal Structure Of 3-Hsa Hydroxylase From Rhodococcus
Sp. Rha1
pdb|2RFQ|D Chain D, Crystal Structure Of 3-Hsa Hydroxylase From Rhodococcus
Sp. Rha1
Length = 394
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 4/83 (4%)
Query: 100 VDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSK-GITAFIIEKGMPGFSTAQKLDKL 158
VDGGY +NG W ++G + V IK G +F+I + + + +
Sbjct: 129 VDGGYTVNGAWAW-SSGCDHASWAVLGGPVIKDGRPVDFVSFLIPR--EDYRIDDVWNVV 185
Query: 159 GMRGSDTCELVFENCFVPNENVL 181
G+RG+ + +V E+ FVP VL
Sbjct: 186 GLRGTGSNTVVVEDVFVPTHRVL 208
>pdb|1IS2|A Chain A, Crystal Structure Of Peroxisomal Acyl-coa Oxidase-ii From
Rat Liver
pdb|1IS2|B Chain B, Crystal Structure Of Peroxisomal Acyl-coa Oxidase-ii From
Rat Liver
pdb|2DDH|A Chain A, Crystal Structure Of Acyl-Coa Oxidase Complexed With
3-Oh-Dodecanoate
Length = 661
Score = 36.6 bits (83), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 36/164 (21%), Positives = 66/164 (40%), Gaps = 19/164 (11%)
Query: 46 HSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKA--DRVDGG 103
H + + L+ + Q++++ + E G A +E G+ + G++ A D
Sbjct: 103 HLGMFLPTLLHQATAEQQERFFMPAWNLEITGTYAQTEMGHGTHLRGLETTATYDPKTQE 162
Query: 104 YIINGN-----KMWCTN-GPVAQTLVVYAKTDIKAGSKGITAFII-------EKGMPGFS 150
+I+N K W G + +V A+ + G+ AF++ K +PG +
Sbjct: 163 FILNSPTVTSIKWWPGGLGKTSNHAIVLAQLITQGECYGLHAFVVPIREIGTHKPLPGIT 222
Query: 151 TAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGK----GVYV 190
K G D L +N +P EN+L + + G YV
Sbjct: 223 VGDIGPKFGYEEMDNGYLKMDNYRIPRENMLMKYAQVKPDGTYV 266
>pdb|1W07|A Chain A, Arabidopsis Thaliana Acyl-Coa Oxidase 1
pdb|1W07|B Chain B, Arabidopsis Thaliana Acyl-Coa Oxidase 1
Length = 659
Score = 34.3 bits (77), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 36/159 (22%), Positives = 66/159 (41%), Gaps = 18/159 (11%)
Query: 46 HSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKA--DRVDGG 103
H + + + G+ Q+ K+L + +G A +E GS+V G++ A D
Sbjct: 102 HWGMFVPAIKGQGTEEQQKKWLSLANKMQIIGCYAQTELGHGSNVQGLETTATLDPKTDE 161
Query: 104 YIIN-----GNKMWCTN-GPVAQTLVVYAKTDIKAGSKGITAFIIE-------KGMPGFS 150
++I+ +K W G V+ VVYA+ GI FI++ +P +
Sbjct: 162 FVIHTPTQTASKWWPGGLGKVSTHAVVYARLITNGKDYGIHGFIVQLRSLEDHSPLPNIT 221
Query: 151 TAQKLDKLG---MRGSDTCELVFENCFVPNENVLGQEGK 186
K+G D L+F++ +P + +L + K
Sbjct: 222 VGDIGTKMGNGAYNSMDNGFLMFDHVRIPRDQMLMRLSK 260
>pdb|3AFE|A Chain A, Crystal Structure Of The Hsaa Monooxygenase From
M.Tuberculosis
pdb|3AFE|B Chain B, Crystal Structure Of The Hsaa Monooxygenase From
M.Tuberculosis
pdb|3AFE|C Chain C, Crystal Structure Of The Hsaa Monooxygenase From
M.Tuberculosis
pdb|3AFE|D Chain D, Crystal Structure Of The Hsaa Monooxygenase From
M.Tuberculosis
pdb|3AFF|A Chain A, Crystal Structure Of The Hsaa Monooxygenase From M.
Tuberculosis
pdb|3AFF|B Chain B, Crystal Structure Of The Hsaa Monooxygenase From M.
Tuberculosis
Length = 394
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
Query: 100 VDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSK-GITAFIIEKGMPGFSTAQKLDKL 158
VDGGY++NG+ W + A V IK G +F+I + + +
Sbjct: 129 VDGGYLVNGSWNWSSGCDHASWTFVGGPV-IKDGRPVDFGSFLIPRSE--YEIKDVWYVV 185
Query: 159 GMRGSDTCELVFENCFVPNENVL 181
G+RG+ + LV ++ FVP L
Sbjct: 186 GLRGTGSNTLVVKDVFVPRHRFL 208
>pdb|3G8D|A Chain A, Crystal Structure Of The Biotin Carboxylase Subunit, E296a
Mutant, Of Acetyl-Coa Carboxylase From Escherichia Coli
pdb|3G8D|B Chain B, Crystal Structure Of The Biotin Carboxylase Subunit, E296a
Mutant, Of Acetyl-Coa Carboxylase From Escherichia Coli
Length = 444
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 5/64 (7%)
Query: 158 LGMRGSDTCELVFEN--CFVPNENVLGQEGKGVYVMMSGLDL--ERLVLAAG-PLGIMQA 212
+G RG+ T E +FEN + N Q V M++G+DL E+L +AAG PL I Q
Sbjct: 267 IGYRGAGTFEFLFENGEFYFIEMNTRIQVAHPVTEMITGVDLIKEQLRIAAGQPLSIKQE 326
Query: 213 CLDV 216
+ V
Sbjct: 327 EVHV 330
>pdb|1DV2|A Chain A, The Structure Of Biotin Carboxylase, Mutant E288k,
Complexed With Atp
pdb|1DV2|B Chain B, The Structure Of Biotin Carboxylase, Mutant E288k,
Complexed With Atp
Length = 452
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 5/64 (7%)
Query: 158 LGMRGSDTCELVFEN--CFVPNENVLGQEGKGVYVMMSGLDL--ERLVLAAG-PLGIMQA 212
+G RG+ T E +FEN + N Q V M++G+DL E+L +AAG PL I Q
Sbjct: 270 IGYRGAGTFEFLFENGEFYFIKMNTRIQVEHPVTEMITGVDLIKEQLRIAAGQPLSIKQE 329
Query: 213 CLDV 216
+ V
Sbjct: 330 EVHV 333
>pdb|3JZF|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Benzimidazoles Series
pdb|3JZF|B Chain B, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Benzimidazoles Series
pdb|3JZI|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Benzimidazole Series
pdb|3JZI|B Chain B, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Benzimidazole Series
Length = 486
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 5/64 (7%)
Query: 158 LGMRGSDTCELVFEN--CFVPNENVLGQEGKGVYVMMSGLDL--ERLVLAAG-PLGIMQA 212
+G RG+ T E +FEN + N Q V M++G+DL E+L +AAG PL I Q
Sbjct: 288 IGYRGAGTFEFLFENGEFYFIEMNTRIQVEHPVTEMITGVDLIKEQLRIAAGQPLSIKQE 347
Query: 213 CLDV 216
+ V
Sbjct: 348 EVHV 351
>pdb|3RUP|A Chain A, Crystal Structure Of E.Coli Biotin Carboxylase In Complex
With Two Adp And Two Ca Ions
pdb|3RUP|B Chain B, Crystal Structure Of E.Coli Biotin Carboxylase In Complex
With Two Adp And Two Ca Ions
pdb|3RV3|A Chain A, Crystal Structure Of E.Coli Biotin Carboxylase In Complex
With Two Adp And One Mg Ion
pdb|3RV3|B Chain B, Crystal Structure Of E.Coli Biotin Carboxylase In Complex
With Two Adp And One Mg Ion
Length = 452
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 5/64 (7%)
Query: 158 LGMRGSDTCELVFEN--CFVPNENVLGQEGKGVYVMMSGLDL--ERLVLAAG-PLGIMQA 212
+G RG+ T E +FEN + N Q V M++G+DL E+L +AAG PL I Q
Sbjct: 270 IGYRGAGTFEFLFENGEFYFIEMNTRIQVEHPVTEMITGVDLIKEQLRIAAGQPLSIKQE 329
Query: 213 CLDV 216
+ V
Sbjct: 330 EVHV 333
>pdb|1BNC|A Chain A, Three-Dimensional Structure Of The Biotin Carboxylase
Subunit Of Acetyl-Coa Carboxylase
pdb|1BNC|B Chain B, Three-Dimensional Structure Of The Biotin Carboxylase
Subunit Of Acetyl-Coa Carboxylase
pdb|1DV1|A Chain A, Structure Of Biotin Carboxylase (Apo)
pdb|1DV1|B Chain B, Structure Of Biotin Carboxylase (Apo)
pdb|2J9G|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Amppnp And Adp
pdb|2J9G|B Chain B, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Amppnp And Adp
pdb|2VR1|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Atp Analog, Adpcf2p.
pdb|2VR1|B Chain B, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Atp Analog, Adpcf2p.
pdb|2V58|A Chain A, Crystal Structure Of Biotin Carboxylase From E.Coli In
Complex With Potent Inhibitor 1
pdb|2V58|B Chain B, Crystal Structure Of Biotin Carboxylase From E.Coli In
Complex With Potent Inhibitor 1
pdb|2V59|A Chain A, Crystal Structure Of Biotin Carboxylase From E.Coli In
Complex With Potent Inhibitor 2
pdb|2V59|B Chain B, Crystal Structure Of Biotin Carboxylase From E.Coli In
Complex With Potent Inhibitor 2
pdb|2V5A|A Chain A, Crystal Structure Of Biotin Carboxylase From E.Coli In
Complex With Potent Inhibitor 3
pdb|2V5A|B Chain B, Crystal Structure Of Biotin Carboxylase From E.Coli In
Complex With Potent Inhibitor 3
pdb|2W6M|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Amino-Oxazole Fragment Series
pdb|2W6M|B Chain B, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Amino-Oxazole Fragment Series
pdb|2W6N|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Amino-Oxazole Fragment Series
pdb|2W6N|B Chain B, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Amino-Oxazole Fragment Series
pdb|2W6O|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With 4-Amino-7,7-Dimethyl-7,8-Dihydro-
Quinazolinone Fragment
pdb|2W6O|C Chain C, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With 4-Amino-7,7-Dimethyl-7,8-Dihydro-
Quinazolinone Fragment
pdb|2W6P|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With 5-Methyl-6-Phenyl-Quinazoline-2,4-Diamine
pdb|2W6P|B Chain B, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With 5-Methyl-6-Phenyl-Quinazoline-2,4-Diamine
pdb|2W6Q|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With The Triazine-2,4-Diamine Fragment
pdb|2W6Q|B Chain B, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With The Triazine-2,4-Diamine Fragment
pdb|2W6Z|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With The 3-(3-Methyl-But-2-Enyl)-3h-Purin-6-
Ylamine Fragment
pdb|2W6Z|B Chain B, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With The 3-(3-Methyl-But-2-Enyl)-3h-Purin-6-
Ylamine Fragment
pdb|2W70|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With The Amino-Thiazole-Pyrimidine Fragment
pdb|2W70|B Chain B, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With The Amino-Thiazole-Pyrimidine Fragment
pdb|2W71|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With The Imidazole-Pyrimidine Inhibitor
pdb|2W71|C Chain C, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With The Imidazole-Pyrimidine Inhibitor
Length = 449
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 5/64 (7%)
Query: 158 LGMRGSDTCELVFEN--CFVPNENVLGQEGKGVYVMMSGLDL--ERLVLAAG-PLGIMQA 212
+G RG+ T E +FEN + N Q V M++G+DL E+L +AAG PL I Q
Sbjct: 267 IGYRGAGTFEFLFENGEFYFIEMNTRIQVEHPVTEMITGVDLIKEQLRIAAGQPLSIKQE 326
Query: 213 CLDV 216
+ V
Sbjct: 327 EVHV 330
>pdb|3RV4|A Chain A, Crystal Structure Of E.Coli Biotin Carboxylase R16e Mutant
In Complex With Mg-Adp And Bicarbonate
Length = 452
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 5/64 (7%)
Query: 158 LGMRGSDTCELVFEN--CFVPNENVLGQEGKGVYVMMSGLDL--ERLVLAAG-PLGIMQA 212
+G RG+ T E +FEN + N Q V M++G+DL E+L +AAG PL I Q
Sbjct: 270 IGYRGAGTFEFLFENGEFYFIEMNTRIQVEHPVTEMITGVDLIKEQLRIAAGQPLSIKQE 329
Query: 213 CLDV 216
+ V
Sbjct: 330 EVHV 333
>pdb|3G8C|A Chain A, Crystal Stucture Of Biotin Carboxylase In Complex With
Biotin, Bicarbonate, Adp And Mg Ion
pdb|3G8C|B Chain B, Crystal Stucture Of Biotin Carboxylase In Complex With
Biotin, Bicarbonate, Adp And Mg Ion
Length = 444
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 5/64 (7%)
Query: 158 LGMRGSDTCELVFEN--CFVPNENVLGQEGKGVYVMMSGLDL--ERLVLAAG-PLGIMQA 212
+G RG+ T E +FEN + N Q V M++G+DL E+L +AAG PL I Q
Sbjct: 267 IGYRGAGTFEFLFENGEFYFIEMNTRIQVEHPVTEMITGVDLIKEQLRIAAGQPLSIKQE 326
Query: 213 CLDV 216
+ V
Sbjct: 327 EVHV 330
>pdb|2GPS|A Chain A, Crystal Structure Of The Biotin Carboxylase Subunit, E23r
Mutant, Of Acetyl-Coa Carboxylase From Escherichia Coli.
pdb|2GPS|B Chain B, Crystal Structure Of The Biotin Carboxylase Subunit, E23r
Mutant, Of Acetyl-Coa Carboxylase From Escherichia Coli
Length = 469
Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 5/64 (7%)
Query: 158 LGMRGSDTCELVFEN--CFVPNENVLGQEGKGVYVMMSGLDL--ERLVLAAG-PLGIMQA 212
+G RG+ T E +FEN + N Q V M++G+DL E+L +AAG PL I Q
Sbjct: 287 IGYRGAGTFEFLFENGEFYFIEMNTRIQVEHPVTEMITGVDLIKEQLRIAAGQPLSIKQE 346
Query: 213 CLDV 216
+ V
Sbjct: 347 EVHV 350
>pdb|2GPW|A Chain A, Crystal Structure Of The Biotin Carboxylase Subunit, F363a
Mutant, Of Acetyl-Coa Carboxylase From Escherichia Coli.
pdb|2GPW|B Chain B, Crystal Structure Of The Biotin Carboxylase Subunit, F363a
Mutant, Of Acetyl-Coa Carboxylase From Escherichia Coli.
pdb|2GPW|C Chain C, Crystal Structure Of The Biotin Carboxylase Subunit, F363a
Mutant, Of Acetyl-Coa Carboxylase From Escherichia Coli.
pdb|2GPW|D Chain D, Crystal Structure Of The Biotin Carboxylase Subunit, F363a
Mutant, Of Acetyl-Coa Carboxylase From Escherichia Coli
Length = 469
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 5/64 (7%)
Query: 158 LGMRGSDTCELVFEN--CFVPNENVLGQEGKGVYVMMSGLDL--ERLVLAAG-PLGIMQA 212
+G RG+ T E +FEN + N Q V M++G+DL E+L +AAG PL I Q
Sbjct: 287 IGYRGAGTFEFLFENGEFYFIEMNTRIQVEHPVTEMITGVDLIKEQLRIAAGQPLSIKQE 346
Query: 213 CLDV 216
+ V
Sbjct: 347 EVHV 350
>pdb|1Z75|A Chain A, Crystal Structure Of Arna Dehydrogenase (decarboxylase)
Domain, R619m Mutant
Length = 358
Score = 31.2 bits (69), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 7/53 (13%)
Query: 278 CAAERATQVTLQAIQCLGGNGYVNEYATGRLLRD--AKLYEIGAGTSEIRRMI 328
C A R T+V + LG NG++ + T RLLR+ ++Y + G+ I R +
Sbjct: 8 CTARRRTRVLI-----LGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFL 55
>pdb|1U9J|A Chain A, Crystal Structure Of E. Coli Arna (Pmri) Decarboxylase
Domain
Length = 358
Score = 31.2 bits (69), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 7/53 (13%)
Query: 278 CAAERATQVTLQAIQCLGGNGYVNEYATGRLLRD--AKLYEIGAGTSEIRRMI 328
C A R T+V + LG NG++ + T RLLR+ ++Y + G+ I R +
Sbjct: 8 CTARRRTRVLI-----LGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFL 55
>pdb|1Z7B|A Chain A, Crystal Structure Of E.Coli Arna Dehydrogenase
(Decarboxylase) Domain, R619e Mutant
Length = 358
Score = 31.2 bits (69), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 7/53 (13%)
Query: 278 CAAERATQVTLQAIQCLGGNGYVNEYATGRLLRD--AKLYEIGAGTSEIRRMI 328
C A R T+V + LG NG++ + T RLLR+ ++Y + G+ I R +
Sbjct: 8 CTARRRTRVLI-----LGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFL 55
>pdb|1Z73|A Chain A, Crystal Structure Of E. Coli Arna Dehydrogenase
(decarboxylase) Domain, S433a Mutant
Length = 358
Score = 31.2 bits (69), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 7/53 (13%)
Query: 278 CAAERATQVTLQAIQCLGGNGYVNEYATGRLLRD--AKLYEIGAGTSEIRRMI 328
C A R T+V + LG NG++ + T RLLR+ ++Y + G+ I R +
Sbjct: 8 CTARRRTRVLI-----LGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFL 55
>pdb|1Z74|A Chain A, Crystal Structure Of E.Coli Arna Dehydrogenase
(Decarboxylase) Domain, R619y Mutant
Length = 358
Score = 31.2 bits (69), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 7/53 (13%)
Query: 278 CAAERATQVTLQAIQCLGGNGYVNEYATGRLLRD--AKLYEIGAGTSEIRRMI 328
C A R T+V + LG NG++ + T RLLR+ ++Y + G+ I R +
Sbjct: 8 CTARRRTRVLI-----LGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFL 55
>pdb|1Z7E|A Chain A, Crystal Structure Of Full Length Arna
pdb|1Z7E|B Chain B, Crystal Structure Of Full Length Arna
pdb|1Z7E|C Chain C, Crystal Structure Of Full Length Arna
pdb|1Z7E|D Chain D, Crystal Structure Of Full Length Arna
pdb|1Z7E|E Chain E, Crystal Structure Of Full Length Arna
pdb|1Z7E|F Chain F, Crystal Structure Of Full Length Arna
Length = 660
Score = 31.2 bits (69), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 7/53 (13%)
Query: 278 CAAERATQVTLQAIQCLGGNGYVNEYATGRLLRD--AKLYEIGAGTSEIRRMI 328
C A R T+V + LG NG++ + T RLLR+ ++Y + G+ I R +
Sbjct: 310 CTARRRTRVLI-----LGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFL 357
>pdb|2OR0|A Chain A, Structural Genomics, The Crystal Structure Of A Putative
Hydroxylase From Rhodococcus Sp. Rha1
pdb|2OR0|B Chain B, Structural Genomics, The Crystal Structure Of A Putative
Hydroxylase From Rhodococcus Sp. Rha1
Length = 414
Score = 31.2 bits (69), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 47/127 (37%), Gaps = 18/127 (14%)
Query: 71 ISGEHVGALAMSEPNAGSDVVGMKCK------------ADRVDGGYIINGNKMWCTNGPV 118
I G H LA ++P ++ G A VDGGY++ G W +
Sbjct: 101 IVGVHPWELAFADPQVQEEIWGEDNDTWXASPYAPXGVATPVDGGYVLKGR--WSFSSGT 158
Query: 119 AQTLVVYAKTDIKAGSKGI-TAFIIEKGMPGFS---TAQKLDKLGMRGSDTCELVFENCF 174
+ + G GI T + +P D +G+RG+ + +L+ + F
Sbjct: 159 DHCQWAFLGAXVGDGEGGIATPSSLHVILPRTDYQIVEDTWDVIGLRGTGSKDLIVDGAF 218
Query: 175 VPNENVL 181
VP L
Sbjct: 219 VPGYRTL 225
>pdb|3V71|A Chain A, Crystal Structure Of Puf-6 In Complex With 5be13 Rna
Length = 382
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 39 VGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGM 93
VGL + + N + +LV +PA++ + L ++I G G LAM + VV +
Sbjct: 63 VGLCHSRNGNFIVQKLVELATPAEQRELLRQMIDG---GLLAMCKDKFACRVVQL 114
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,764,363
Number of Sequences: 62578
Number of extensions: 411413
Number of successful extensions: 924
Number of sequences better than 100.0: 72
Number of HSP's better than 100.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 771
Number of HSP's gapped (non-prelim): 80
length of query: 337
length of database: 14,973,337
effective HSP length: 99
effective length of query: 238
effective length of database: 8,778,115
effective search space: 2089191370
effective search space used: 2089191370
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)