Query 019707
Match_columns 337
No_of_seqs 133 out of 1254
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 03:54:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019707.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019707hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0139 Short-chain acyl-CoA d 100.0 4.5E-73 9.7E-78 480.7 20.4 322 1-323 77-398 (398)
2 KOG0140 Medium-chain acyl-CoA 100.0 7.3E-70 1.6E-74 453.8 24.7 333 3-336 70-405 (408)
3 KOG0141 Isovaleryl-CoA dehydro 100.0 4.6E-69 1E-73 449.3 23.5 337 1-337 83-421 (421)
4 PLN02519 isovaleryl-CoA dehydr 100.0 4.1E-63 8.9E-68 460.0 37.6 337 1-337 68-404 (404)
5 cd01156 IVD Isovaleryl-CoA deh 100.0 1.8E-62 4E-67 452.7 37.5 335 1-335 42-376 (376)
6 cd01151 GCD Glutaryl-CoA dehyd 100.0 5E-62 1.1E-66 450.8 37.8 330 1-335 53-382 (386)
7 cd01157 MCAD Medium chain acyl 100.0 4.9E-62 1.1E-66 450.1 36.8 335 1-336 41-378 (378)
8 cd01162 IBD Isobutyryl-CoA deh 100.0 8E-62 1.7E-66 447.9 37.2 334 1-336 41-375 (375)
9 PRK03354 crotonobetainyl-CoA d 100.0 1.1E-61 2.4E-66 447.3 37.4 334 1-337 46-379 (380)
10 PRK12341 putative acyl-CoA deh 100.0 1.6E-61 3.4E-66 446.7 37.4 332 1-336 46-379 (381)
11 cd01160 LCAD Long chain acyl-C 100.0 1.8E-61 4E-66 445.5 37.3 332 1-333 39-371 (372)
12 cd01158 SCAD_SBCAD Short chain 100.0 2.6E-61 5.7E-66 444.8 36.7 335 1-335 39-373 (373)
13 TIGR03207 cyc_hxne_CoA_dh cycl 100.0 2E-61 4.4E-66 444.7 35.9 329 1-332 41-370 (372)
14 cd01161 VLCAD Very long chain 100.0 1.4E-60 2.9E-65 444.0 36.3 335 1-336 65-407 (409)
15 PTZ00461 isovaleryl-CoA dehydr 100.0 1.5E-60 3.3E-65 443.6 36.0 331 1-336 77-408 (410)
16 cd01155 ACAD_FadE2 Acyl-CoA de 100.0 1.1E-59 2.4E-64 436.0 36.3 334 2-335 51-394 (394)
17 PLN02526 acyl-coenzyme A oxida 100.0 1.3E-59 2.9E-64 437.1 36.8 331 1-336 69-399 (412)
18 TIGR03203 pimD_small pimeloyl- 100.0 5.8E-60 1.3E-64 434.4 33.6 327 1-332 46-375 (378)
19 PRK09463 fadE acyl-CoA dehydro 100.0 1.8E-58 4E-63 447.5 35.9 328 1-329 118-466 (777)
20 PRK13026 acyl-CoA dehydrogenas 100.0 1.7E-57 3.8E-62 439.0 36.6 325 1-329 117-465 (774)
21 cd01153 ACAD_fadE5 Putative ac 100.0 4E-57 8.6E-62 420.3 36.6 328 1-333 45-406 (407)
22 COG1960 CaiA Acyl-CoA dehydrog 100.0 4.8E-57 1E-61 418.9 35.3 336 1-336 48-389 (393)
23 cd01152 ACAD_fadE6_17_26 Putat 100.0 1.6E-56 3.5E-61 413.2 33.1 328 1-335 44-380 (380)
24 TIGR03204 pimC_large pimeloyl- 100.0 7E-56 1.5E-60 409.9 36.8 329 1-335 49-394 (395)
25 PTZ00456 acyl-CoA dehydrogenas 100.0 2.8E-55 6.2E-60 420.9 36.2 330 1-334 108-479 (622)
26 KOG0137 Very-long-chain acyl-C 100.0 5.1E-57 1.1E-61 406.7 22.5 335 1-335 118-460 (634)
27 PLN02876 acyl-CoA dehydrogenas 100.0 8.6E-55 1.9E-59 434.7 36.8 335 2-336 452-819 (822)
28 PLN02636 acyl-coenzyme A oxida 100.0 1.1E-54 2.4E-59 420.5 34.6 329 2-336 106-486 (686)
29 cd01163 DszC Dibenzothiophene 100.0 4.9E-55 1.1E-59 403.2 28.9 324 1-333 31-371 (377)
30 cd01154 AidB Proteins involved 100.0 6.5E-54 1.4E-58 399.1 35.4 325 2-335 75-418 (418)
31 PLN02312 acyl-CoA oxidase 100.0 3.3E-53 7.1E-58 409.3 35.4 332 2-336 115-488 (680)
32 cd01159 NcnH Naphthocyclinone 100.0 9.5E-53 2.1E-57 386.9 23.5 319 1-335 31-370 (370)
33 PRK11561 isovaleryl CoA dehydr 100.0 1.6E-50 3.4E-55 380.1 35.5 320 2-335 96-441 (538)
34 cd00567 ACAD Acyl-CoA dehydrog 100.0 1.1E-49 2.3E-54 361.2 33.3 283 49-331 43-327 (327)
35 PTZ00460 acyl-CoA dehydrogenas 100.0 3.9E-49 8.4E-54 379.6 32.1 301 36-336 88-432 (646)
36 cd01150 AXO Peroxisomal acyl-C 100.0 2.9E-49 6.2E-54 381.0 31.2 316 21-336 80-445 (610)
37 PTZ00457 acyl-CoA dehydrogenas 100.0 3.5E-48 7.5E-53 361.9 32.3 291 1-326 59-362 (520)
38 KOG0138 Glutaryl-CoA dehydroge 100.0 1.4E-47 3E-52 319.6 24.6 328 3-335 97-426 (432)
39 PLN02443 acyl-coenzyme A oxida 100.0 2.5E-45 5.5E-50 353.7 31.0 295 42-336 98-441 (664)
40 KOG1469 Predicted acyl-CoA deh 100.0 8.9E-47 1.9E-51 310.4 15.6 334 2-335 37-382 (392)
41 KOG0135 Pristanoyl-CoA/acyl-Co 100.0 6.7E-34 1.4E-38 255.1 19.5 316 21-337 103-466 (661)
42 TIGR02309 HpaB-1 4-hydroxyphen 100.0 2.5E-29 5.4E-34 234.5 29.6 270 23-301 80-391 (477)
43 KOG0136 Acyl-CoA oxidase [Lipi 99.9 3.2E-25 7E-30 203.8 16.4 303 35-337 103-450 (670)
44 PF00441 Acyl-CoA_dh_1: Acyl-C 99.9 3.1E-23 6.7E-28 166.4 18.1 150 185-334 1-150 (150)
45 COG2368 Aromatic ring hydroxyl 99.9 5.4E-20 1.2E-24 165.3 20.8 242 57-303 125-401 (493)
46 TIGR02310 HpaB-2 4-hydroxyphen 99.8 1.6E-17 3.5E-22 154.8 28.4 269 23-298 93-400 (519)
47 PF08028 Acyl-CoA_dh_2: Acyl-C 99.7 1.2E-16 2.6E-21 125.5 13.5 123 200-322 1-133 (134)
48 PF02770 Acyl-CoA_dh_M: Acyl-C 99.6 4.1E-15 8.9E-20 95.8 7.3 51 78-128 1-51 (52)
49 PF11794 HpaB_N: 4-hydroxyphen 99.5 5.8E-13 1.2E-17 114.2 14.3 121 61-181 123-263 (264)
50 PF02771 Acyl-CoA_dh_N: Acyl-C 99.3 9.8E-13 2.1E-17 100.0 4.1 74 1-74 40-113 (113)
51 PF03241 HpaB: 4-hydroxyphenyl 97.7 0.0033 7.3E-08 52.7 15.3 73 229-301 42-119 (205)
52 PTZ00457 acyl-CoA dehydrogenas 92.5 2.8 6.1E-05 40.4 12.7 79 227-306 429-508 (520)
53 PF14749 Acyl-CoA_ox_N: Acyl-c 88.9 0.37 8E-06 36.9 2.7 34 42-75 91-124 (125)
54 KOG0137 Very-long-chain acyl-C 78.9 63 0.0014 31.5 12.9 70 227-296 533-603 (634)
55 PRK09463 fadE acyl-CoA dehydro 51.0 3E+02 0.0065 28.4 13.7 101 227-335 559-662 (777)
56 PF12584 TRAPPC10: Trafficking 40.7 84 0.0018 24.6 5.5 62 98-172 65-139 (147)
57 PF05284 DUF736: Protein of un 35.6 1.3E+02 0.0029 22.2 5.5 60 114-175 20-80 (107)
58 PF05428 CRF-BP: Corticotropin 30.9 51 0.0011 29.1 3.0 14 102-115 114-127 (311)
59 PRK13701 psiB plasmid SOS inhi 28.9 1.4E+02 0.0031 23.0 4.7 65 100-174 42-108 (144)
60 KOG3297 DNA-directed RNA polym 21.4 4.6E+02 0.01 21.5 9.0 14 168-181 102-115 (202)
61 PF04115 Ureidogly_hydro: Urei 21.0 4.4E+02 0.0096 21.1 6.9 53 99-152 64-123 (165)
No 1
>KOG0139 consensus Short-chain acyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=100.00 E-value=4.5e-73 Score=480.65 Aligned_cols=322 Identities=42% Similarity=0.694 Sum_probs=313.5
Q ss_pred CccccccCCCCCccCCCCCCCHHHHHHHHHHHHhccCchhhHhhhhhhhHHHHHHhcCCHHHHhhhchhhhcCcceeEEE
Q 019707 1 MGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALA 80 (337)
Q Consensus 1 l~~~Gl~~l~~p~~~GG~~~~~~~~~~~~e~la~~~~~~a~~~~~~~~~~~~~l~~~g~~~~~~~~l~~i~~g~~~~~~~ 80 (337)
+.|.||+++-+|++|||.|.+......++|+|++.|+|++..+..|+.+...+|..||+++||++|+|.+. |+.+++++
T Consensus 77 ~fe~Glmgv~vpeeyGGsG~df~~~~~v~EEisk~d~sv~~~v~v~ntL~~~~i~~fGteeqK~~~~P~~~-~d~vgsfA 155 (398)
T KOG0139|consen 77 LFELGLMGVEVPEEYGGSGLDFFAAAIVIEEISKVDASVGVIVDVQNTLYLPLIIQFGTEEQKEKYLPKLT-GDLVGSFA 155 (398)
T ss_pred HhhcCcceeecChhhCCCchhHHHHHHHHHHHhccCccceeEEEecccccchHHHHhCcHHHHhhhcchhh-ccccceee
Confidence 35899999999999999999999999999999999999999999999899999999999999998888875 88899999
Q ss_pred ecCCCCCCCcCCcEeEEEEeCCeEEEeeeeEeeeCCCCCCEEEEEEEeCCCCCCCCeEEEEEeCCCCCeeeccccccccC
Q 019707 81 MSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGM 160 (337)
Q Consensus 81 ~te~~~gs~~~~~~~~a~~~~~g~~l~G~k~~~s~~~~ad~~lv~a~~~~~~~~~~~~~flvp~~~~Gv~~~~~~~~~g~ 160 (337)
+|||+.|||.....|+|++++|.|+|||+|+|+||+..||+++|++-+++..+.+++++|+||++.||+++..+.+++||
T Consensus 156 lSEpgaGSDa~A~~T~Ak~~Gd~~viNGsKmWItN~~~A~~~lVfan~d~~~~~Kgit~fiV~rd~~Gl~~~k~eDKLGm 235 (398)
T KOG0139|consen 156 LSEPGAGSDAFALKTTAKKDGDDYVINGSKMWITNAGEADWFLVFANADPSKGYKGITCFIVPRDTPGLSLGKKEDKLGM 235 (398)
T ss_pred ecCCCCCcchHHhhhhHhhcCCeEEEecceeeecCCcccceEEEEEecChhhccCceeEEEeeCCCCCcccCCccccccc
Confidence 99999999999999999999999999999999999999999999999877788999999999999999999999999999
Q ss_pred CCCcceeEEEceeeeCCCCcccCCCchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcchHHHHH
Q 019707 161 RGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGK 240 (337)
Q Consensus 161 ~~~~~~~v~f~~v~Vp~~~vl~~~~~g~~~~~~~~~~~~~~~~a~~~G~~~~al~~a~~~~~~r~~~g~~~~~~~~vq~~ 240 (337)
|++.+|.+.||||+||++++||+++.|+.+....++-+|+..+++.+|++..++|+++.|+++|.+||.++.++|.+|++
T Consensus 236 RaSsTcql~fedVrVpks~IlGe~G~GykyAm~~Ln~gRIgi~AqmlglaQ~c~d~tI~Y~q~R~~FGk~l~d~Q~iQhq 315 (398)
T KOG0139|consen 236 RASSTCQLHFEDVRVPKSSILGEYGKGYKYAIEVLNAGRIGIGAQMLGLAQGCFDETIPYAQERLQFGKRLLDFQGLQHQ 315 (398)
T ss_pred cccceeeEEeccccccchhhcccCCcchHHHHHhcCccceeehhhhhhhhHhHHHhhhHHHHHHHHhcchhhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCChhhhhHHHHHHHHHHHHHHHHHHHhhCCCcccCcchHHHHHHhhccCcccCC
Q 019707 241 TADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAG 320 (337)
Q Consensus 241 la~~~~~~~~~~a~~~~a~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~r~~rd~~~~~~~~g 320 (337)
||++.+++|++|.++|++++.-+.+.|...+++|+|+++++.+..+++.|++++||.||+++.|.+|+|||++...|++|
T Consensus 316 iA~~~teiEaaRlL~ynaAr~k~~G~pf~keAAMAKl~ase~A~~~t~qCiq~lGG~Gyt~d~paek~yRDarI~~IyeG 395 (398)
T KOG0139|consen 316 IADMATEIEAARLLVYNAARMKDQGLPFVKEAAMAKLYASEVATKTTHQCIQWLGGVGYTKDFPAEKFYRDARIGEIYEG 395 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHhhhhhhhHHHHHHHHHHhcccccccccHHHHhhhceeeeeecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHH
Q 019707 321 TSE 323 (337)
Q Consensus 321 ~~~ 323 (337)
+++
T Consensus 396 tsn 398 (398)
T KOG0139|consen 396 TSN 398 (398)
T ss_pred CCC
Confidence 863
No 2
>KOG0140 consensus Medium-chain acyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=100.00 E-value=7.3e-70 Score=453.81 Aligned_cols=333 Identities=38% Similarity=0.626 Sum_probs=325.9
Q ss_pred cccccCCCCCccCCCCCCCHHHHHHHHHHHHhccCchhhHhhhhhhhHHHHHHhcCCHHHHhhhchhhhcCcceeEEEec
Q 019707 3 NFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMS 82 (337)
Q Consensus 3 ~~Gl~~l~~p~~~GG~~~~~~~~~~~~e~la~~~~~~a~~~~~~~~~~~~~l~~~g~~~~~~~~l~~i~~g~~~~~~~~t 82 (337)
+.|+....+|++|||.|++..+.+.+.|+|+++|.++...+..|+ ++.++|..+|+++||++||+++.....++++|+|
T Consensus 70 ~lG~~~~~ip~~~GG~Gls~l~t~lI~E~LayGCtg~~~~I~~~~-l~~~pi~~~gneeqKkk~lg~l~~~p~~asYcvT 148 (408)
T KOG0140|consen 70 ELGFMNTYIPEDYGGLGLSRLDTCLIFEALAYGCTGIQTAISIHN-LAAWPIILSGNEEQKKKYLGRLAEEPKVASYCVT 148 (408)
T ss_pred HcccCcccCccccCCCCchhHHHHHHHHHHHccchhHHHHHhccc-hhhhhehhcCcHHHHHhhhhhhhcchhhhhhhcc
Confidence 689999999999999999999999999999999999999999998 9999999999999999999999999999999999
Q ss_pred CCCCCCCcCCcEeEEEEeCCeEEEeeeeEeeeCCCCCCEEEEEEEeCCC---CCCCCeEEEEEeCCCCCeeecccccccc
Q 019707 83 EPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIK---AGSKGITAFIIEKGMPGFSTAQKLDKLG 159 (337)
Q Consensus 83 e~~~gs~~~~~~~~a~~~~~g~~l~G~k~~~s~~~~ad~~lv~a~~~~~---~~~~~~~~flvp~~~~Gv~~~~~~~~~g 159 (337)
||+.|||.....|++++.+|.|+|||+|.|+||+++|+|++|++|++++ ++.+.+..|+|+.|+||++......++|
T Consensus 149 EPgAGSDvagikTka~KkGDeYiiNGsKawItg~G~anwyfVlaRtd~~pk~p~~Kaft~fiVe~dTpGlt~GkKE~nmG 228 (408)
T KOG0140|consen 149 EPGAGSDVAGIKTKAEKKGDEYIINGSKAWITGAGHANWYFVLARTDPDPKTPAGKAFTAFIVEGDTPGLTRGKKEKNMG 228 (408)
T ss_pred CCCCCcchhhhhhhhhhcCCEEEEcCceeeeecCCccceEEEEEecCCCCCCCCCcceEEEEEeCCCCCcCcChhhhccc
Confidence 9999999999999999999999999999999999999999999999886 5678899999999999999999999999
Q ss_pred CCCCcceeEEEceeeeCCCCcccCCCchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcchHHHH
Q 019707 160 MRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQG 239 (337)
Q Consensus 160 ~~~~~~~~v~f~~v~Vp~~~vl~~~~~g~~~~~~~~~~~~~~~~a~~~G~~~~al~~a~~~~~~r~~~g~~~~~~~~vq~ 239 (337)
.+.+++-.+.|+||+||.+++||.++.|+......++..|..++++++|++.++++++.+|+.+|.+||.||.++|.+|.
T Consensus 229 qr~sdTR~itFEDvrVP~~Nvlg~~G~GFkvAm~~fd~tRp~vAa~alG~A~r~ld~a~ky~~eRK~FG~~iA~hQ~vqF 308 (408)
T KOG0140|consen 229 QRCSDTRGITFEDVRVPKENVLGAPGAGFKVAMGGFDKTRPNVAAGALGLAQRCLDEATKYALERKAFGTPIANHQAVQF 308 (408)
T ss_pred ccCCCCceeeeeecccchhccccCCCccceehhhhccCCCCchhhhhhHHHHHHHHHHHHHHHHHHHhCcChhhhhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCChhhhhHHHHHHHHHHHHHHHHHHHhhCCCcccCcchHHHHHHhhccCcccC
Q 019707 240 KTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGA 319 (337)
Q Consensus 240 ~la~~~~~~~~~~a~~~~a~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~r~~rd~~~~~~~~ 319 (337)
.|++|.+.++.+|.+.+++++++|++.+..-.++++|+++++.+-.+++.++|++||.||.+++|.|++.||++.++|++
T Consensus 309 ~LAdMA~~le~aRL~~~~aa~evd~~r~~sy~aSiAK~fA~D~an~~at~AvQifGG~Gfn~eYpVeklmRDaki~QIyE 388 (408)
T KOG0140|consen 309 MLADMAINLELARLMTRNAAWEVDNGRRNSYYASIAKLFATDTANQAATNAVQIFGGNGFNKEYPVEKLMRDAKIYQIYE 388 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCcchHHHHHHHHHhhhhHHHHHHHHHHhhccCCccccccHHHHHhhhhhhHhhh
Confidence 99999999999999999999999999888889999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHhc
Q 019707 320 GTSEIRRMIIGRALLKQ 336 (337)
Q Consensus 320 g~~~~~~~~l~~~~~~~ 336 (337)
|++.++|..|+|.++++
T Consensus 389 GTsqiqRlvIsR~ll~~ 405 (408)
T KOG0140|consen 389 GTSQIQRLVISRSLLQK 405 (408)
T ss_pred chHHHHHHHHHHHHHHH
Confidence 99999999999999875
No 3
>KOG0141 consensus Isovaleryl-CoA dehydrogenase [Amino acid transport and metabolism; Lipid transport and metabolism]
Probab=100.00 E-value=4.6e-69 Score=449.31 Aligned_cols=337 Identities=75% Similarity=1.204 Sum_probs=328.4
Q ss_pred CccccccCCCCCccCCCCCCCHHHHHHHHHHHHhccCchhhHhhhhhhhHHHHHHhcCCHHHHhhhchhhhcCcceeEEE
Q 019707 1 MGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALA 80 (337)
Q Consensus 1 l~~~Gl~~l~~p~~~GG~~~~~~~~~~~~e~la~~~~~~a~~~~~~~~~~~~~l~~~g~~~~~~~~l~~i~~g~~~~~~~ 80 (337)
|.+.||+++..|++|||.|+++...+.++|++++.++..+..+..|+++++..|.+.|+++|+++|||++.+|+.+++.+
T Consensus 83 lG~~gllGita~~~~GG~G~~y~~h~ivmEE~sra~g~v~lsygaHSnlcinqlvrnGseeQkekylPkl~sGe~iGalA 162 (421)
T KOG0141|consen 83 LGKQGLLGITAPEEYGGSGGGYLSHCIVMEEISRASGGVALSYGAHSNLCINQLVRNGSEEQKEKYLPKLISGEHIGALA 162 (421)
T ss_pred hhhcCcccccchhhhCCCchhHHHHHHHHHHHHhhcCCcccccccccchHHHHHHhcCCHHHHHhhhhhhhcccccceee
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCCcCCcEeEEEEeCCeEEEeeeeEeeeCCCCCCEEEEEEEeCCC--CCCCCeEEEEEeCCCCCeeeccccccc
Q 019707 81 MSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIK--AGSKGITAFIIEKGMPGFSTAQKLDKL 158 (337)
Q Consensus 81 ~te~~~gs~~~~~~~~a~~~~~g~~l~G~k~~~s~~~~ad~~lv~a~~~~~--~~~~~~~~flvp~~~~Gv~~~~~~~~~ 158 (337)
||||+.|||+..+.++|++++++|+|||+|.|+||++.||.++|.|.++.. +...++++|+|+...||+...+..+++
T Consensus 163 MsEp~AGSDvv~mK~~Aek~g~~yiLNGsK~witNG~~advliVyAkTd~~a~~~~hGIt~FiVEkgm~GFs~~~KLdKl 242 (421)
T KOG0141|consen 163 MSEPGAGSDVVSMKLKAEKKGDDYILNGSKFWITNGPDADVLIVYAKTDHSAVPPSHGITAFIVEKGMPGFSTAQKLDKL 242 (421)
T ss_pred ecCCCCCCccceeeeeceecCCcEEecCcEEEEecCCCCcEEEEEEecCCCCCCCcCceEEEEEcCCCcccccchhhHhh
Confidence 999999999999999999999999999999999999999999999999866 677899999999999999999999999
Q ss_pred cCCCCcceeEEEceeeeCCCCcccCCCchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcchHHH
Q 019707 159 GMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQ 238 (337)
Q Consensus 159 g~~~~~~~~v~f~~v~Vp~~~vl~~~~~g~~~~~~~~~~~~~~~~a~~~G~~~~al~~a~~~~~~r~~~g~~~~~~~~vq 238 (337)
||+++++|+++|+|++||.++++|.++.|+.++..-++..|+.+++..+|+++.++|++..|+++|.+||+++..||.+|
T Consensus 243 GmrgsdTcELvFed~~vpas~ilg~enkGvYvlMsgLd~ERLvla~gplglmqa~~d~~~~Y~~qR~afgk~ig~fQ~~Q 322 (421)
T KOG0141|consen 243 GMRGSDTCELVFEDCKVPASNILGEENKGVYVLMSGLDLERLVLAAGPLGLMQAALDETFPYAHQRKAFGKKIGHFQLLQ 322 (421)
T ss_pred cCCCCcchheehhhccCcHHHhcCcCCceEEEEecCCChhHhhhccCchHHHHHHHHHhhhHHHHHHHhCCchhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCChhhhhHHHHHHHHHHHHHHHHHHHhhCCCcccCcchHHHHHHhhccCccc
Q 019707 239 GKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIG 318 (337)
Q Consensus 239 ~~la~~~~~~~~~~a~~~~a~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~r~~rd~~~~~~~ 318 (337)
.++++|++.+.++|+.+|..++..|++......+..+++|+++.+..++-.++|++||.||.+++|+.|++||++...|.
T Consensus 323 gklAdmyT~l~a~Rsyvy~va~~~d~g~~~~kdcag~il~aaE~~tqVald~iQ~~GGnGYineyp~gr~lrDAklyeIg 402 (421)
T KOG0141|consen 323 GKLADMYTTLCASRSYVYNVARACDAGNVDPKDCAGVILYAAEKATQVALDAIQCLGGNGYINEYPTGRLLRDAKLYEIG 402 (421)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhhhhhhhhHhhhhHHHHHHHHhhccCcccccccchhhhhhhceeeecc
Confidence 99999999999999999999999999988889999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHhcC
Q 019707 319 AGTSEIRRMIIGRALLKQQ 337 (337)
Q Consensus 319 ~g~~~~~~~~l~~~~~~~~ 337 (337)
.||+++.+..|+|.+.+.+
T Consensus 403 aGTsEirr~lIgRel~~e~ 421 (421)
T KOG0141|consen 403 AGTSEIRRLLIGRELNKEY 421 (421)
T ss_pred CChHHHHHHHHHHHhhccC
Confidence 9999999999999998764
No 4
>PLN02519 isovaleryl-CoA dehydrogenase
Probab=100.00 E-value=4.1e-63 Score=460.00 Aligned_cols=337 Identities=92% Similarity=1.471 Sum_probs=318.6
Q ss_pred CccccccCCCCCccCCCCCCCHHHHHHHHHHHHhccCchhhHhhhhhhhHHHHHHhcCCHHHHhhhchhhhcCcceeEEE
Q 019707 1 MGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALA 80 (337)
Q Consensus 1 l~~~Gl~~l~~p~~~GG~~~~~~~~~~~~e~la~~~~~~a~~~~~~~~~~~~~l~~~g~~~~~~~~l~~i~~g~~~~~~~ 80 (337)
|++.||+++.+|++|||.++++.+.+.++|++++.|+++++++.+|.......+..+++++||++|+|++.+|+.+++++
T Consensus 68 l~~~G~~~~~vP~e~GG~g~~~~~~~~v~e~la~~~~s~a~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a 147 (404)
T PLN02519 68 MGDFNLHGITAPEEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRNGTPAQKEKYLPKLISGEHVGALA 147 (404)
T ss_pred HHHCCCCcccCChhhCCCCCCHHHHHHHHHHHhhhcccHHHHHHhhhhhHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEE
Confidence 46899999999999999999999999999999999999999888887556778899999999999999999999999999
Q ss_pred ecCCCCCCCcCCcEeEEEEeCCeEEEeeeeEeeeCCCCCCEEEEEEEeCCCCCCCCeEEEEEeCCCCCeeeccccccccC
Q 019707 81 MSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGM 160 (337)
Q Consensus 81 ~te~~~gs~~~~~~~~a~~~~~g~~l~G~k~~~s~~~~ad~~lv~a~~~~~~~~~~~~~flvp~~~~Gv~~~~~~~~~g~ 160 (337)
+|||..|+|...+.+++++++|||+|||+|.|+|++..+|+++|.++++++++++++++|+||++.|||++.++|+.+||
T Consensus 148 ~sEp~~gsd~~~~~t~a~~~~~g~~lnG~K~~vs~a~~ad~~~v~a~~~~~~~~~~~~~~lVp~~~~Gv~~~~~~~~~G~ 227 (404)
T PLN02519 148 MSEPNSGSDVVSMKCKAERVDGGYVLNGNKMWCTNGPVAQTLVVYAKTDVAAGSKGITAFIIEKGMPGFSTAQKLDKLGM 227 (404)
T ss_pred ecCCCcCCCcccceEEEEEeCCEEEEEeEEEeecCCCcCCEEEEEEEeCCCCCCCeeEEEEEeCCCCCeeccCcccccCC
Confidence 99999999999999999999999999999999999999999999999876555567899999999999999999999999
Q ss_pred CCCcceeEEEceeeeCCCCcccCCCchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcchHHHHH
Q 019707 161 RGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGK 240 (337)
Q Consensus 161 ~~~~~~~v~f~~v~Vp~~~vl~~~~~g~~~~~~~~~~~~~~~~a~~~G~~~~al~~a~~~~~~r~~~g~~~~~~~~vq~~ 240 (337)
++++++++.|+||+||++++++..+.|+......+...++.+++.++|+++++++.+++|+++|.++|.|+.++|.+|++
T Consensus 228 rgt~s~~v~f~~v~Vp~~~~lg~~~~G~~~~~~~~~~~r~~~aa~~lG~a~~al~~a~~~a~~R~~~g~pl~~~~~v~~~ 307 (404)
T PLN02519 228 RGSDTCELVFENCFVPEENVLGQEGKGVYVMMSGLDLERLVLAAGPLGLMQACLDVVLPYVRQREQFGRPIGEFQFIQGK 307 (404)
T ss_pred CCCCeeEEEeCeEEecHHHcCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhceeCCccHHHhHHHHHH
Confidence 99999999999999999999999888987777778899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCChhhhhHHHHHHHHHHHHHHHHHHHhhCCCcccCcchHHHHHHhhccCcccCC
Q 019707 241 TADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAG 320 (337)
Q Consensus 241 la~~~~~~~~~~a~~~~a~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~r~~rd~~~~~~~~g 320 (337)
|+++...+++++++++++++.++++.....+...+|.++++.+.+++..+++++||.||++++|++|+|||++...+++|
T Consensus 308 la~~~~~l~aar~~~~~aa~~~~~~~~~~~~~~~ak~~~~~~a~~~~~~a~~i~Gg~g~~~~~~l~r~~RD~~~~~~~~G 387 (404)
T PLN02519 308 LADMYTSLQSSRSYVYSVARDCDNGKVDRKDCAGVILCAAERATQVALQAIQCLGGNGYINEYPTGRLLRDAKLYEIGAG 387 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceecCCChHHHHHHhhhcceeeCC
Confidence 99999999999999999999998876556778889999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhcC
Q 019707 321 TSEIRRMIIGRALLKQQ 337 (337)
Q Consensus 321 ~~~~~~~~l~~~~~~~~ 337 (337)
++++++..|++.+++++
T Consensus 388 ~~e~~~~~i~~~~~~~~ 404 (404)
T PLN02519 388 TSEIRRMLIGRELFKEE 404 (404)
T ss_pred HHHHHHHHHHHHHhhcC
Confidence 99999999999999874
No 5
>cd01156 IVD Isovaleryl-CoA dehydrogenase. Isovaleryl-CoA dehydrogenase (IVD) is an is an acyl-CoA dehydrogenase, which catalyzes the third step in leucine catabolism, the conversion of isovaleryl-CoA (3-methylbutyryl-CoA) into 3-methylcrotonyl-CoA. IVD is a homotetramer and has the greatest affinity for small branched chain substrates.
Probab=100.00 E-value=1.8e-62 Score=452.74 Aligned_cols=335 Identities=76% Similarity=1.216 Sum_probs=316.1
Q ss_pred CccccccCCCCCccCCCCCCCHHHHHHHHHHHHhccCchhhHhhhhhhhHHHHHHhcCCHHHHhhhchhhhcCcceeEEE
Q 019707 1 MGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALA 80 (337)
Q Consensus 1 l~~~Gl~~l~~p~~~GG~~~~~~~~~~~~e~la~~~~~~a~~~~~~~~~~~~~l~~~g~~~~~~~~l~~i~~g~~~~~~~ 80 (337)
|++.||+++.+|++|||.|+++.+...++|+|++.|+++++.+.+|...+...|..+++++|+++|++++.+|+++++++
T Consensus 42 l~~~Gl~~~~vP~e~GG~g~~~~~~~~~~e~la~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a 121 (376)
T cd01156 42 MGKLGLLGITAPEEYGGSGMGYLAHVIIMEEISRASGSVALSYGAHSNLCINQIYRNGSAAQKEKYLPKLISGEHIGALA 121 (376)
T ss_pred HHhCCCCcccCCHhhCCCCCCHHHHHHHHHHHhccchhHHHHHHHhhhhHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEE
Confidence 46899999999999999999999999999999999999999887776566678999999999999999999999999999
Q ss_pred ecCCCCCCCcCCcEeEEEEeCCeEEEeeeeEeeeCCCCCCEEEEEEEeCCCCCCCCeEEEEEeCCCCCeeeccccccccC
Q 019707 81 MSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGM 160 (337)
Q Consensus 81 ~te~~~gs~~~~~~~~a~~~~~g~~l~G~k~~~s~~~~ad~~lv~a~~~~~~~~~~~~~flvp~~~~Gv~~~~~~~~~g~ 160 (337)
+|||..|+|...+.++++++++||+|||+|.|+|++..||+++|+++++++++.+++++|+||++.|||++.++|+.+||
T Consensus 122 ~sEp~~gs~~~~~~t~a~~~~~g~~l~G~k~~vs~~~~a~~~lv~a~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~G~ 201 (376)
T cd01156 122 MSEPNAGSDVVSMKLRAEKKGDRYVLNGSKMWITNGPDADTLVVYAKTDPSAGAHGITAFIVEKGMPGFSRAQKLDKLGM 201 (376)
T ss_pred ecCCCCCCChhhCeEEEEEeCCEEEEEEEEEEecCCCcCCEEEEEEEeCCCCCCCceEEEEEcCCCCCeecCCccccccC
Confidence 99999999999999999999999999999999999999999999999876555567899999999999999999999999
Q ss_pred CCCcceeEEEceeeeCCCCcccCCCchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcchHHHHH
Q 019707 161 RGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGK 240 (337)
Q Consensus 161 ~~~~~~~v~f~~v~Vp~~~vl~~~~~g~~~~~~~~~~~~~~~~a~~~G~~~~al~~a~~~~~~r~~~g~~~~~~~~vq~~ 240 (337)
++++++++.|+||+||++++|+..+.|+......+.+.|+.+++.++|+++++++.+++|+++|.++|.|+.++|.+|++
T Consensus 202 ~~~~~~~v~~~~v~Vp~~~~lg~~~~g~~~~~~~~~~~r~~~aa~~lG~a~~al~~~~~~~~~R~~~g~~i~~~~~v~~~ 281 (376)
T cd01156 202 RGSNTCELVFEDCEVPEENILGGENKGVYVLMSGLDYERLVLAGGPIGIMQAALDVAIPYAHQRKQFGQPIGEFQLVQGK 281 (376)
T ss_pred CCCCceEEEeCceEecHHHcCCCCCchHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCcchHHhHHHHHH
Confidence 99999999999999999999999998988888888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCChhhhhHHHHHHHHHHHHHHHHHHHhhCCCcccCcchHHHHHHhhccCcccCC
Q 019707 241 TADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAG 320 (337)
Q Consensus 241 la~~~~~~~~~~a~~~~a~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~r~~rd~~~~~~~~g 320 (337)
++++..+++++|++++.+++.++++.......+.+|.++++.+.++++.+++++||.||.+++|++|+|||++.+.+++|
T Consensus 282 la~~~~~l~aar~~~~~aa~~~d~~~~~~~~~~~~k~~~~~~a~~~~~~a~~~~Gg~g~~~~~~l~r~~Rda~~~~~~~g 361 (376)
T cd01156 282 LADMYTRLNASRSYLYTVAKACDRGNMDPKDAAGVILYAAEKATQVALDAIQILGGNGYINDYPTGRLLRDAKLYEIGAG 361 (376)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccCCHHHHHHHHhhcceecCC
Confidence 99999999999999999999998775555677889999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHh
Q 019707 321 TSEIRRMIIGRALLK 335 (337)
Q Consensus 321 ~~~~~~~~l~~~~~~ 335 (337)
++++++..|++.++|
T Consensus 362 t~~~~~~~i~~~~~~ 376 (376)
T cd01156 362 TSEIRRMVIGRELFK 376 (376)
T ss_pred HHHHHHHHHHHHhhC
Confidence 999999999998875
No 6
>cd01151 GCD Glutaryl-CoA dehydrogenase. Glutaryl-CoA dehydrogenase (GCD). GCD is an acyl-CoA dehydrogenase, which catalyzes the oxidative decarboxylation of glutaryl-CoA to crotonyl-CoA and carbon dioxide in the catabolism of lysine, hydroxylysine, and tryptophan. It uses electron transfer flavoprotein (ETF) as an electron acceptor. GCD is a homotetramer. GCD deficiency leads to a severe neurological disorder in humans.
Probab=100.00 E-value=5e-62 Score=450.75 Aligned_cols=330 Identities=36% Similarity=0.570 Sum_probs=309.7
Q ss_pred CccccccCCCCCccCCCCCCCHHHHHHHHHHHHhccCchhhHhhhhhhhHHHHHHhcCCHHHHhhhchhhhcCcceeEEE
Q 019707 1 MGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALA 80 (337)
Q Consensus 1 l~~~Gl~~l~~p~~~GG~~~~~~~~~~~~e~la~~~~~~a~~~~~~~~~~~~~l~~~g~~~~~~~~l~~i~~g~~~~~~~ 80 (337)
|++.||+++ +|++|||.|+++.+...++|++++.|+++++.+.+|...+...+..+++++|+++|++++.+|+.+++++
T Consensus 53 l~~~Gl~~~-vP~~~GG~g~~~~~~~~v~e~l~~~~~s~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a 131 (386)
T cd01151 53 MGELGLLGA-TIKGYGCAGLSSVAYGLIAREVERVDSGYRSFMSVQSSLVMLPIYDFGSEEQKQKYLPKLASGELIGCFG 131 (386)
T ss_pred HHHCCCCcc-CccccCCCCCCHHHHHHHHHHHHhhChhHHHHHHHHHhHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEE
Confidence 468999999 9999999999999999999999999999988877776456677889999999999999999999999999
Q ss_pred ecCCCCCCCcCCcEeEEEEeCCeEEEeeeeEeeeCCCCCCEEEEEEEeCCCCCCCCeEEEEEeCCCCCeeeccccccccC
Q 019707 81 MSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGM 160 (337)
Q Consensus 81 ~te~~~gs~~~~~~~~a~~~~~g~~l~G~k~~~s~~~~ad~~lv~a~~~~~~~~~~~~~flvp~~~~Gv~~~~~~~~~g~ 160 (337)
+|||..|+|+..+.++|++++|||+|||+|.|+|++..||+++|+++++++ +++.+|+||++.|||++.+.|+.+||
T Consensus 132 ~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~is~~~~Ad~~lv~ar~~~~---~~~~~flVp~~~~gv~i~~~~~~~G~ 208 (386)
T cd01151 132 LTEPNHGSDPGGMETRARKDGGGYKLNGSKTWITNSPIADVFVVWARNDET---GKIRGFILERGMKGLSAPKIQGKFSL 208 (386)
T ss_pred ecCCCCCCChhhCeEEEEEECCEEEEEEEEEeecCCCcCCEEEEEEEECCC---CcEEEEEEcCCCCCeecCCCCCCcCC
Confidence 999999999999999999999999999999999999999999999998642 46789999999999999999999999
Q ss_pred CCCcceeEEEceeeeCCCCcccCCCchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcchHHHHH
Q 019707 161 RGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGK 240 (337)
Q Consensus 161 ~~~~~~~v~f~~v~Vp~~~vl~~~~~g~~~~~~~~~~~~~~~~a~~~G~~~~al~~a~~~~~~r~~~g~~~~~~~~vq~~ 240 (337)
+++++++++|+||+||++++++. +.|+......+...|+.+++.++|+++++++.+++|+++|.++|+|+.++|.+|++
T Consensus 209 ~g~~s~~v~f~~v~Vp~~~~l~~-~~g~~~~~~~~~~~r~~~aa~~lG~a~~al~~a~~~a~~R~~~g~~i~~~q~vq~~ 287 (386)
T cd01151 209 RASITGEIVMDNVFVPEENLLPG-AEGLRGPFKCLNNARYGIAWGALGAAEDCYHTARQYVLDRKQFGRPLAAFQLVQKK 287 (386)
T ss_pred CCCceeEEEEccEEeCHHHcCCc-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeecCCchhhhHHHHHH
Confidence 99999999999999999999986 46777677778888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCChhhhhHHHHHHHHHHHHHHHHHHHhhCCCcccCcchHHHHHHhhccCcccCC
Q 019707 241 TADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAG 320 (337)
Q Consensus 241 la~~~~~~~~~~a~~~~a~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~r~~rd~~~~~~~~g 320 (337)
|+++.+.++++|++++.+++.++++.+...+.+++|.++++.+.++++.+++++||.||.+++|++|+|||++...+++|
T Consensus 288 la~~~~~~eaar~l~~~a~~~~d~~~~~~~~~~~~K~~~~~~a~~~~~~a~~~~Gg~g~~~~~~l~r~~RD~~~~~~~~G 367 (386)
T cd01151 288 LADMLTEIALGLLACLRVGRLKDQGKATPEQISLLKRNNCGKALEIARTAREMLGGNGISDEYHIIRHMVNLESVNTYEG 367 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCCCHHHHHHHhhhcceecCC
Confidence 99999999999999999999998776566788999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHh
Q 019707 321 TSEIRRMIIGRALLK 335 (337)
Q Consensus 321 ~~~~~~~~l~~~~~~ 335 (337)
++++++..|++.+++
T Consensus 368 ~~~~~~~~i~~~~l~ 382 (386)
T cd01151 368 THDIHALILGRAITG 382 (386)
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999999886
No 7
>cd01157 MCAD Medium chain acyl-CoA dehydrogenase. MCADs are mitochondrial beta-oxidation enzymes, which catalyze the alpha,beta dehydrogenation of the corresponding medium chain acyl-CoA by FAD, which becomes reduced. The reduced form of MCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. MCAD is a homotetramer.
Probab=100.00 E-value=4.9e-62 Score=450.10 Aligned_cols=335 Identities=37% Similarity=0.558 Sum_probs=311.7
Q ss_pred CccccccCCCCCccCCCCCCCHHHHHHHHHHHHhccCchhhHhhhhhhhHHHHHHhcCCHHHHhhhchhhhcCcceeEEE
Q 019707 1 MGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALA 80 (337)
Q Consensus 1 l~~~Gl~~l~~p~~~GG~~~~~~~~~~~~e~la~~~~~~a~~~~~~~~~~~~~l~~~g~~~~~~~~l~~i~~g~~~~~~~ 80 (337)
|++.||+++.+|++|||.|++..+.+.++|++++.|+++++.+..+. .+...+..+++++||++||+++.+|+.+.+++
T Consensus 41 l~~~G~~~~~vP~~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~~~~~-~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a 119 (378)
T cd01157 41 AWELGLMNTHIPEDCGGLGLGTFDTCLITEELAYGCTGVQTAIEANS-LGQMPVIISGNDEQKKKYLGRMTEEPLMCAYC 119 (378)
T ss_pred HHhCCCCCcCCChhhCCCCCCHHHHHHHHHHHHhhhhHHHHHHHhhh-hhHHHHHHhCCHHHHHHHHHHHhCCCeeEEEE
Confidence 46899999999999999999999999999999999999887765554 55666777899999999999999999999999
Q ss_pred ecCCCCCCCcCCcEeEEEEeCCeEEEeeeeEeeeCCCCCCEEEEEEEeCCCC---CCCCeEEEEEeCCCCCeeecccccc
Q 019707 81 MSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKA---GSKGITAFIIEKGMPGFSTAQKLDK 157 (337)
Q Consensus 81 ~te~~~gs~~~~~~~~a~~~~~g~~l~G~k~~~s~~~~ad~~lv~a~~~~~~---~~~~~~~flvp~~~~Gv~~~~~~~~ 157 (337)
+|||..|+|.....+++++++|||+|||+|.|+|++..||+++|++++++++ +.+++++|+||.+.|||++.+.|+.
T Consensus 120 ~tEp~~gs~~~~~~t~a~~~~~g~~l~G~k~~vs~~~~ad~~lv~a~~~~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~ 199 (378)
T cd01157 120 VTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKANWYFLLARSDPDPKCPASKAFTGFIVEADTPGIQPGRKELN 199 (378)
T ss_pred ecCCCCCCchhcCeEEEEEcCCEEEEeeEEEeecCCccCCEEEEEEEeCCcccCCCCCceEEEEEcCCCCCeeccCcccc
Confidence 9999999999999999999999999999999999999999999999986432 2357889999999999999999999
Q ss_pred ccCCCCcceeEEEceeeeCCCCcccCCCchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcchHH
Q 019707 158 LGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFI 237 (337)
Q Consensus 158 ~g~~~~~~~~v~f~~v~Vp~~~vl~~~~~g~~~~~~~~~~~~~~~~a~~~G~~~~al~~a~~~~~~r~~~g~~~~~~~~v 237 (337)
+|+++++++++.|+||+||.+++++.++.|+......+...|+.+++.++|+++++++.+++|+++|.++|+|+.++|.+
T Consensus 200 ~G~~~~~s~~~~~~~v~Vp~~~~lg~~~~g~~~~~~~~~~~r~~~aa~~lG~a~~~l~~~~~~~~~R~~fg~~i~~~q~v 279 (378)
T cd01157 200 MGQRCSDTRGITFEDVRVPKENVLIGEGAGFKIAMGAFDKTRPPVAAGAVGLAQRALDEATKYALERKTFGKLIAEHQAV 279 (378)
T ss_pred cCCCCCCceEEEeccEEECHHHcCCCCCchHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccCccHHHhHHH
Confidence 99999999999999999999999998888888777788888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChhhhhHHHHHHHHHHHHHHHHHHHhhCCCcccCcchHHHHHHhhccCcc
Q 019707 238 QGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEI 317 (337)
Q Consensus 238 q~~la~~~~~~~~~~a~~~~a~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~r~~rd~~~~~~ 317 (337)
|++|+++...++++|++++.+++.++.+.......+++|.++++.+.++++.+++++||.||.+++|++|+|||++.+.+
T Consensus 280 q~~la~~~~~~~aar~~~~~aa~~~d~~~~~~~~~~~aK~~~~~~a~~~~~~a~~~~Gg~g~~~~~~l~r~~Rd~~~~~~ 359 (378)
T cd01157 280 SFMLADMAMKVELARLAYQRAAWEVDSGRRNTYYASIAKAFAADIANQLATDAVQIFGGNGFNSEYPVEKLMRDAKIYQI 359 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCCCHHHHHHHHHhhcee
Confidence 99999999999999999999999888765455677889999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHHHhc
Q 019707 318 GAGTSEIRRMIIGRALLKQ 336 (337)
Q Consensus 318 ~~g~~~~~~~~l~~~~~~~ 336 (337)
++|++++++..|++.+++|
T Consensus 360 ~~G~~~~~~~~i~~~~~~~ 378 (378)
T cd01157 360 YEGTSQIQRLIISREHLGK 378 (378)
T ss_pred cCCHHHHHHHHHHHHHhcC
Confidence 9999999999999999875
No 8
>cd01162 IBD Isobutyryl-CoA dehydrogenase. Isobutyryl-CoA dehydrogenase (IBD) catalyzes the alpha, beta- dehydrogenation of short branched chain acyl-CoA intermediates in valine catabolism. It is predicted to be a homotetramer.
Probab=100.00 E-value=8e-62 Score=447.92 Aligned_cols=334 Identities=36% Similarity=0.584 Sum_probs=314.9
Q ss_pred CccccccCCCCCccCCCCCCCHHHHHHHHHHHHhccCchhhHhhhhhhhHHHHHHhcCCHHHHhhhchhhhcCcceeEEE
Q 019707 1 MGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALA 80 (337)
Q Consensus 1 l~~~Gl~~l~~p~~~GG~~~~~~~~~~~~e~la~~~~~~a~~~~~~~~~~~~~l~~~g~~~~~~~~l~~i~~g~~~~~~~ 80 (337)
|++.||+++.+|++|||.|.++.+.+.++|++++.|+++++.+.+|. .+...+..+++++|+++|++++.+|+.+++++
T Consensus 41 l~~~Gl~~~~vP~~~GG~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a 119 (375)
T cd01162 41 AAELGFGGIYIRDDVGGSGLSRLDASIIFEALSTGCVSTAAYISIHN-MCAWMIDSFGNDEQRERFLPDLCTMEKLASYC 119 (375)
T ss_pred HHHCCCCCcCCCHhhCCCCCCHHHHHHHHHHHHhhchhHHHHHHHhh-hHHHHHHHhCCHHHHHHHHHHHhCCCceeEEE
Confidence 46899999999999999999999999999999999999998888887 77888999999999999999999999999999
Q ss_pred ecCCCCCCCcCCcEeEEEEeCCeEEEeeeeEeeeCCCCCCEEEEEEEeCCCCCCCCeEEEEEeCCCCCeeeccccccccC
Q 019707 81 MSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGM 160 (337)
Q Consensus 81 ~te~~~gs~~~~~~~~a~~~~~g~~l~G~k~~~s~~~~ad~~lv~a~~~~~~~~~~~~~flvp~~~~Gv~~~~~~~~~g~ 160 (337)
+|||.+|+|...+.++++++++||+|||+|+|+|++..+|+++|+++++++ +..++++|+||++.|||++.+.|+.+||
T Consensus 120 ~tE~~~gsd~~~~~t~a~~~~~g~~l~G~k~~vs~~~~ad~~~v~a~~~~~-~~~~~~~~lv~~~~~gv~v~~~~~~~g~ 198 (375)
T cd01162 120 LTEPGSGSDAAALRTRAVREGDHYVLNGSKAFISGAGDSDVYVVMARTGGE-GPKGISCFVVEKGTPGLSFGANEKKMGW 198 (375)
T ss_pred ecCCCCCCChhhCEEEEEEeCCEEEEEEEEEEecCCCCCCEEEEEEEecCC-CCCceEEEEEeCCCCCeecCCcccccCC
Confidence 999999999999999999999999999999999999999999999997643 3467889999999999999999999999
Q ss_pred CCCcceeEEEceeeeCCCCcccCCCchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcchHHHHH
Q 019707 161 RGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGK 240 (337)
Q Consensus 161 ~~~~~~~v~f~~v~Vp~~~vl~~~~~g~~~~~~~~~~~~~~~~a~~~G~~~~al~~a~~~~~~r~~~g~~~~~~~~vq~~ 240 (337)
++++++++.||||+||.+++|+.++.|+......+...|+..++.++|+++++++.+++|+++|.++|.|+.++|.+|++
T Consensus 199 ~~~~~~~l~f~~v~Vp~~~~lg~~~~g~~~~~~~l~~~r~~~aa~~lG~a~~al~~~~~~a~~R~~fg~~l~~~~~vq~~ 278 (375)
T cd01162 199 NAQPTRAVIFEDCRVPVENRLGGEGQGFGIAMAGLNGGRLNIASCSLGAAQAALDLARAYLEERKQFGKPLADFQALQFK 278 (375)
T ss_pred CCCCeeEEEECceEecHHHcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCccHHhhHHHHHH
Confidence 99999999999999999999999988988777788889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCC-ChhhhhHHHHHHHHHHHHHHHHHHHhhCCCcccCcchHHHHHHhhccCcccC
Q 019707 241 TADMYTALQSSRSYVYSVARDCDNGKV-DPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGA 319 (337)
Q Consensus 241 la~~~~~~~~~~a~~~~a~~~~~~~~~-~~~~~~~~k~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~r~~rd~~~~~~~~ 319 (337)
|+++..++++++++++.+++.++++.+ ....++++|.++++.+.++++.+++++||.||.+++|++|+|||++...+++
T Consensus 279 la~~~~~l~~a~~~~~~a~~~~~~~~~~~~~~~~~ak~~~~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~ 358 (375)
T cd01162 279 LADMATELVASRLMVRRAASALDRGDPDAVKLCAMAKRFATDECFDVANQALQLHGGYGYLKDYPVEQYVRDLRVHQILE 358 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCChHHHHHHHhhcceeec
Confidence 999999999999999999999887643 3456788999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHhc
Q 019707 320 GTSEIRRMIIGRALLKQ 336 (337)
Q Consensus 320 g~~~~~~~~l~~~~~~~ 336 (337)
|++++++..+++.++++
T Consensus 359 G~~~~~~~~~~~~~~~~ 375 (375)
T cd01162 359 GTNEIMRLIIARALLTR 375 (375)
T ss_pred CHHHHHHHHHHHHHhcC
Confidence 99999999999999864
No 9
>PRK03354 crotonobetainyl-CoA dehydrogenase; Validated
Probab=100.00 E-value=1.1e-61 Score=447.33 Aligned_cols=334 Identities=29% Similarity=0.491 Sum_probs=310.0
Q ss_pred CccccccCCCCCccCCCCCCCHHHHHHHHHHHHhccCchhhHhhhhhhhHHHHHHhcCCHHHHhhhchhhhcCcceeEEE
Q 019707 1 MGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALA 80 (337)
Q Consensus 1 l~~~Gl~~l~~p~~~GG~~~~~~~~~~~~e~la~~~~~~a~~~~~~~~~~~~~l~~~g~~~~~~~~l~~i~~g~~~~~~~ 80 (337)
|++.||+++.+|++|||.|+++.+...++|++++.|+++++++.+|. ....+..+++++|+++|++++.+|+.+.+++
T Consensus 46 l~~~Gl~~~~vP~~~GG~g~~~~~~~~~~~~la~~~~s~~~~~~~~~--~~~~l~~~g~~e~~~~~l~~~~~g~~~~~~a 123 (380)
T PRK03354 46 LADMGIDSLLIPEEHGGLDAGFVTLAAVWMELGRLGAPTYVLYQLPG--GFNTFLREGTQEQIDKIMAFRGTGKQMWNSA 123 (380)
T ss_pred HHHCCCCccCCChhhCCCCCCHHHHHHHHHHHHhcCcchHHHHHhcc--cHHHHHHhCCHHHHHHHHHHHhCCCeeEEEE
Confidence 46899999999999999999999999999999999999887665553 2456788999999999999999999999999
Q ss_pred ecCCCCCCCcCCcEeEEEEeCCeEEEeeeeEeeeCCCCCCEEEEEEEeCCCCCCCCeEEEEEeCCCCCeeeccccccccC
Q 019707 81 MSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGM 160 (337)
Q Consensus 81 ~te~~~gs~~~~~~~~a~~~~~g~~l~G~k~~~s~~~~ad~~lv~a~~~~~~~~~~~~~flvp~~~~Gv~~~~~~~~~g~ 160 (337)
+|||+.|||...+.|++++++|||+|||+|.|+|++.++||++|+++++++++...+++|+||++.|||++. +|+.+||
T Consensus 124 ~tE~~~gs~~~~~~t~a~~~~~g~~lnG~K~fis~~~~ad~~~v~a~~~~~~~~~~~~~~lv~~~~~gv~~~-~~~~~G~ 202 (380)
T PRK03354 124 ITEPGAGSDVGSLKTTYTRRNGKVYLNGSKCFITSSAYTPYIVVMARDGASPDKPVYTEWFVDMSKPGIKVT-KLEKLGL 202 (380)
T ss_pred ecCCCCCCchhhCEEEEEEeCCEEEEeeEEEEEcCCCcCCEEEEEEEcCCCCCCCceeEEEEECCCCceEec-cccccCC
Confidence 999999999999999999999999999999999999999999999997544445567889999999999985 7999999
Q ss_pred CCCcceeEEEceeeeCCCCcccCCCchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcchHHHHH
Q 019707 161 RGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGK 240 (337)
Q Consensus 161 ~~~~~~~v~f~~v~Vp~~~vl~~~~~g~~~~~~~~~~~~~~~~a~~~G~~~~al~~a~~~~~~r~~~g~~~~~~~~vq~~ 240 (337)
++++++++.|+||+||++++++.++.|+......+...|+..++.++|+++++++.+++|+++|.++|+|+.++|.+|++
T Consensus 203 r~~~~~~v~f~~v~Vp~~~~lg~~g~g~~~~~~~~~~~r~~~aa~~~G~a~~al~~a~~~a~~R~~fg~~i~~~q~vq~~ 282 (380)
T PRK03354 203 RMDSCCEITFDDVELDEKDMFGREGNGFNRVKEEFDHERFLVALTNYGTAMCAFEDAARYANQRVQFGEAIGRFQLIQEK 282 (380)
T ss_pred CCCCeEEEEEccEEecHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCccHHHhHHHHHH
Confidence 99999999999999999999999888887766777788999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCChhhhhHHHHHHHHHHHHHHHHHHHhhCCCcccCcchHHHHHHhhccCcccCC
Q 019707 241 TADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAG 320 (337)
Q Consensus 241 la~~~~~~~~~~a~~~~a~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~r~~rd~~~~~~~~g 320 (337)
|+++...+++++++++++++..+++.+.....+++|.++++.+.+++..+++++||.||.+++|++|+|||++...+++|
T Consensus 283 la~~~~~~~aar~l~~~aa~~~~~~~~~~~~~~~aK~~~~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~G 362 (380)
T PRK03354 283 FAHMAIKLNSMKNMLYEAAWKADNGTITSGDAAMCKYFCANAAFEVVDSAMQVLGGVGIAGNHRISRFWRDLRVDRVSGG 362 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhcCceecCCChHHHHHHHhhhhhccCC
Confidence 99999999999999999999888766556788999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhcC
Q 019707 321 TSEIRRMIIGRALLKQQ 337 (337)
Q Consensus 321 ~~~~~~~~l~~~~~~~~ 337 (337)
++++++..|+|.+++++
T Consensus 363 ~~~~~~~~i~~~~~~~~ 379 (380)
T PRK03354 363 SDEMQILTLGRAVLKQY 379 (380)
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 99999999999998764
No 10
>PRK12341 putative acyl-CoA dehydrogenase; Provisional
Probab=100.00 E-value=1.6e-61 Score=446.69 Aligned_cols=332 Identities=32% Similarity=0.502 Sum_probs=307.0
Q ss_pred CccccccCCCCCccCCCCCCCHHHHHHHHHHHHhccCchhhHhhhhhhhHHHHHHhcCCHHHHhhhchhh-hcCcceeEE
Q 019707 1 MGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKL-ISGEHVGAL 79 (337)
Q Consensus 1 l~~~Gl~~l~~p~~~GG~~~~~~~~~~~~e~la~~~~~~a~~~~~~~~~~~~~l~~~g~~~~~~~~l~~i-~~g~~~~~~ 79 (337)
|++.||+++.+|++|||.|.++.+.+.++|++++.|.+ ++++ .+. .+...+..+|+++||++|++++ .+|+.+.++
T Consensus 46 l~~~Gl~~~~vP~~~GG~g~~~~~~~~~~e~la~~~~~-~~~~-~~~-~~~~~l~~~g~~~q~~~~l~~~~~~g~~~~~~ 122 (381)
T PRK12341 46 LADNGISMLGVPEEFGGTPADYVTQMLVLEEVSKCGAP-AFLI-TNG-QCIHSMRRFGSAEQLRKTAESTLETGDPAYAL 122 (381)
T ss_pred HHHCCCCCcCCChhhCCCCcCHHHHHHHHHHHhhcChh-HHHH-hhh-hhHHHHHHhCCHHHHHHHhHHHhhCCCeEEEE
Confidence 46899999999999999999999999999999999987 3433 332 4556678899999999999998 599988999
Q ss_pred EecCCCCCCCcCCcEeEEEEeCCeEEEeeeeEeeeCCCCCCEEEEEEEeCCCC-CCCCeEEEEEeCCCCCeeeccccccc
Q 019707 80 AMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKA-GSKGITAFIIEKGMPGFSTAQKLDKL 158 (337)
Q Consensus 80 ~~te~~~gs~~~~~~~~a~~~~~g~~l~G~k~~~s~~~~ad~~lv~a~~~~~~-~~~~~~~flvp~~~~Gv~~~~~~~~~ 158 (337)
++|||+.|||...+++++++++|||+|||+|+|+||+..||+++|++++++++ +...+++|+||++.|||++ .+|+.+
T Consensus 123 a~tEp~~gsd~~~~~t~a~~~~gg~~lnG~K~~is~~~~Ad~~~v~a~~~~~~~~~~~~~~~lV~~~~~gv~~-~~~~~~ 201 (381)
T PRK12341 123 ALTEPGAGSDNNSATTTYTRKNGKVYLNGQKTFITGAKEYPYMLVLARDPQPKDPKKAFTLWWVDSSKPGIKI-NPLHKI 201 (381)
T ss_pred EecCCCCCCchhhCeeEEEEeCCEEEEEeEEEEEcCCccCCEEEEEEEcCCCCCCCCceEEEEEeCCCCceee-cccccc
Confidence 99999999999999999999999999999999999999999999999986543 3357899999999999998 579999
Q ss_pred cCCCCcceeEEEceeeeCCCCcccCCCchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcchHHH
Q 019707 159 GMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQ 238 (337)
Q Consensus 159 g~~~~~~~~v~f~~v~Vp~~~vl~~~~~g~~~~~~~~~~~~~~~~a~~~G~~~~al~~a~~~~~~r~~~g~~~~~~~~vq 238 (337)
||++++++++.|+||+||++++|+.++.|+..+...+...|+.++++++|+++.+++.+++|+++|.++|.|+.++|.+|
T Consensus 202 G~~~~~~~~v~~~~v~Vp~~~~lg~~~~g~~~~~~~~~~~r~~~aa~~lG~a~~al~~~~~~~~~R~~~g~~i~~~~~v~ 281 (381)
T PRK12341 202 GWHMLSTCEVYLDNVEVEESDLVGEEGMGFLNVMYNFEMERLINAARSLGFAECAFEDAARYANQRIQFGKPIGHNQLIQ 281 (381)
T ss_pred cCCCCCceEEEECcEEecHHHcCCCCChHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCccHHHhHHHH
Confidence 99999999999999999999999999989877777788899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCChhhhhHHHHHHHHHHHHHHHHHHHhhCCCcccCcchHHHHHHhhccCccc
Q 019707 239 GKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIG 318 (337)
Q Consensus 239 ~~la~~~~~~~~~~a~~~~a~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~r~~rd~~~~~~~ 318 (337)
++|+++.+.++++|++++++++..+++.+....++++|.++++.+.++++.+++++||.||.+++|++|+|||++...++
T Consensus 282 ~~la~~~~~~~aar~~~~~a~~~~d~~~~~~~~~~~aK~~~~~~a~~v~~~~~~~~Gg~g~~~~~~l~r~~RD~~~~~~~ 361 (381)
T PRK12341 282 EKLTLMAIKIENMRNMVYKVAWQADNGQSLRTSAALAKLYCARTAMEVIDDAIQIMGGLGYTDEARVSRFWRDVRCERIG 361 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCHHHHHHHHhhcceec
Confidence 99999999999999999999998887766567788999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHhc
Q 019707 319 AGTSEIRRMIIGRALLKQ 336 (337)
Q Consensus 319 ~g~~~~~~~~l~~~~~~~ 336 (337)
+|++++++..|++.+++.
T Consensus 362 ~g~~~~~~~~i~~~~~~~ 379 (381)
T PRK12341 362 GGTDEIMIYIAGRQILKD 379 (381)
T ss_pred CCHHHHHHHHHHHHHHhh
Confidence 999999999999999864
No 11
>cd01160 LCAD Long chain acyl-CoA dehydrogenase. LCAD is an acyl-CoA dehydrogenases (ACAD), which is found in the mitochondria of eukaryotes and in some prokaryotes. It catalyzes the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of LCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. LCAD acts as a homodimer.
Probab=100.00 E-value=1.8e-61 Score=445.47 Aligned_cols=332 Identities=38% Similarity=0.688 Sum_probs=310.5
Q ss_pred CccccccCCCCCccCCCCCCCHHHHHHHHHHHHhccCchhhHhhhhhhhHHHHHHhcCCHHHHhhhchhhhcCcceeEEE
Q 019707 1 MGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALA 80 (337)
Q Consensus 1 l~~~Gl~~l~~p~~~GG~~~~~~~~~~~~e~la~~~~~~a~~~~~~~~~~~~~l~~~g~~~~~~~~l~~i~~g~~~~~~~ 80 (337)
|++.||+++.+|++|||.|+++.+...++|++++.+. .++.+.+|...+...+..+++++|+++|++++.+|+.+++++
T Consensus 39 l~~~G~~~~~vP~~~GG~g~~~~~~~~~~e~la~~~~-~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a 117 (372)
T cd01160 39 AGEQGLLGVGFPEEYGGIGGDLLSAAVLWEELARAGG-SGPGLSLHTDIVSPYITRAGSPEQKERVLPQMVAGKKIGAIA 117 (372)
T ss_pred HHhCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHhcc-hHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEE
Confidence 4689999999999999999999999999999999654 477777776566778999999999999999999999999999
Q ss_pred ecCCCCCCCcCCcEeEEEEeCCeEEEeeeeEeeeCCCCCCEEEEEEEeCCC-CCCCCeEEEEEeCCCCCeeecccccccc
Q 019707 81 MSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIK-AGSKGITAFIIEKGMPGFSTAQKLDKLG 159 (337)
Q Consensus 81 ~te~~~gs~~~~~~~~a~~~~~g~~l~G~k~~~s~~~~ad~~lv~a~~~~~-~~~~~~~~flvp~~~~Gv~~~~~~~~~g 159 (337)
+|||.+|+|...+.++++++++||+|||+|.|+|++..||+++|.++++++ ++++++++|+||++.|||++.++|+.+|
T Consensus 118 ~tE~~~gsd~~~~~t~a~~~~~g~~l~G~k~~vs~~~~Ad~~~v~a~~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~G 197 (372)
T cd01160 118 MTEPGAGSDLQGIRTTARKDGDHYVLNGSKTFITNGMLADVVIVVARTGGEARGAGGISLFLVERGTPGFSRGRKLKKMG 197 (372)
T ss_pred ecCCCCCCchhhCeEEEEEeCCEEEEeeEEEEecCCCccCEEEEEEEeCCCCCCCCceEEEEEeCCCCCeecCCcccccc
Confidence 999999999999999999999999999999999999999999999998654 2356789999999999999989999999
Q ss_pred CCCCcceeEEEceeeeCCCCcccCCCchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcchHHHH
Q 019707 160 MRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQG 239 (337)
Q Consensus 160 ~~~~~~~~v~f~~v~Vp~~~vl~~~~~g~~~~~~~~~~~~~~~~a~~~G~~~~al~~a~~~~~~r~~~g~~~~~~~~vq~ 239 (337)
|++++++++.|+||+||++++|+.++.|+......+...++.+++.++|+++++++.+++|+++|.++|+|+.++|.+|+
T Consensus 198 ~~~~~~~~v~~~~v~Vp~~~~lg~~~~g~~~~~~~~~~~~~~~aa~~lG~a~~al~~a~~~a~~R~~~g~~i~~~q~vq~ 277 (372)
T cd01160 198 WKAQDTAELFFDDCRVPAENLLGEENKGFYYLMQNLPQERLLIAAGALAAAEFMLEETRNYVKQRKAFGKTLAQLQVVRH 277 (372)
T ss_pred CCCCCeEEEEecceEccHHHcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCccHHhhHHHHH
Confidence 99999999999999999999999998898888888889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCChhhhhHHHHHHHHHHHHHHHHHHHhhCCCcccCcchHHHHHHhhccCcccC
Q 019707 240 KTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGA 319 (337)
Q Consensus 240 ~la~~~~~~~~~~a~~~~a~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~r~~rd~~~~~~~~ 319 (337)
+|+++..++++++++++.+++..+.+......++++|.++++.+.++++.+++++||.||++++|++|+|||++.+.+++
T Consensus 278 ~la~~~~~~~~a~~~~~~aa~~~~~~~~~~~~~~~aK~~~~~~a~~v~~~a~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~ 357 (372)
T cd01160 278 KIAELATKVAVTRAFLDNCAWRHEQGRLDVAEASMAKYWATELQNRVAYECVQLHGGWGYMREYPIARAYRDARVQPIYG 357 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcCceecCCCHHHHHHHHhhcccccC
Confidence 99999999999999999999988876655678889999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHH
Q 019707 320 GTSEIRRMIIGRAL 333 (337)
Q Consensus 320 g~~~~~~~~l~~~~ 333 (337)
|++++++..|++.+
T Consensus 358 gt~~~~~~~i~~~~ 371 (372)
T cd01160 358 GTTEIMKELISRQM 371 (372)
T ss_pred CHHHHHHHHHHHhh
Confidence 99999999999876
No 12
>cd01158 SCAD_SBCAD Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases. Short chain acyl-CoA dehydrogenase (SCAD). SCAD is a mitochondrial beta-oxidation enzyme. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of SCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. This subgroup also contains the eukaryotic short/branched chain acyl-CoA dehydrogenase(SBCAD), the bacterial butyryl-CoA dehydorgenase(BCAD) and 2-methylbutyryl-CoA dehydrogenase, which is involved in isoleucine catabolism. These enzymes are homotetramers.
Probab=100.00 E-value=2.6e-61 Score=444.76 Aligned_cols=335 Identities=47% Similarity=0.755 Sum_probs=317.2
Q ss_pred CccccccCCCCCccCCCCCCCHHHHHHHHHHHHhccCchhhHhhhhhhhHHHHHHhcCCHHHHhhhchhhhcCcceeEEE
Q 019707 1 MGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALA 80 (337)
Q Consensus 1 l~~~Gl~~l~~p~~~GG~~~~~~~~~~~~e~la~~~~~~a~~~~~~~~~~~~~l~~~g~~~~~~~~l~~i~~g~~~~~~~ 80 (337)
|++.||+++.+|++|||.+.++.+.+.++|++++.|+++++++.+|...+...+..+++++++++|++++.+|+.+++++
T Consensus 39 l~~~Gl~~l~vP~e~GG~g~~~~~~~~v~~~l~~~~~s~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~G~~~~~~a 118 (373)
T cd01158 39 MAELGLMGIPIPEEYGGAGLDFLAYAIAIEELAKVDASVAVIVSVHNSLGANPIIKFGTEEQKKKYLPPLATGEKIGAFA 118 (373)
T ss_pred HHhCCCCcccCCHHHCCCCCCHHHHHHHHHHHHhhCccHHHHHHHHHhHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEE
Confidence 46899999999999999999999999999999999999999999887566678899999999999999999999999999
Q ss_pred ecCCCCCCCcCCcEeEEEEeCCeEEEeeeeEeeeCCCCCCEEEEEEEeCCCCCCCCeEEEEEeCCCCCeeeccccccccC
Q 019707 81 MSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGM 160 (337)
Q Consensus 81 ~te~~~gs~~~~~~~~a~~~~~g~~l~G~k~~~s~~~~ad~~lv~a~~~~~~~~~~~~~flvp~~~~Gv~~~~~~~~~g~ 160 (337)
+|||.+|++...+.++++++++||+|||+|.|+||+..+|+++|+++++++++.+++++|+||++.|||++.++|+.+||
T Consensus 119 ~se~~~gs~~~~~~~~a~~~~~g~~l~G~k~~vsg~~~ad~~lv~a~~~~~~~~~~~~~~lvp~~~~gv~i~~~~~~~G~ 198 (373)
T cd01158 119 LSEPGAGSDAAALKTTAKKDGDDYVLNGSKMWITNGGEADFYIVFAVTDPSKGYRGITAFIVERDTPGLSVGKKEDKLGI 198 (373)
T ss_pred ecCCCCCCCHHHCEeEEEEeCCEEEEeeEEEEEcCCCcCCEEEEEEEcCCCCCCCceEEEEEcCCCCCeecCCccccccc
Confidence 99999999998999999999999999999999999999999999998765545567899999999999999999999999
Q ss_pred CCCcceeEEEceeeeCCCCcccCCCchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcchHHHHH
Q 019707 161 RGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGK 240 (337)
Q Consensus 161 ~~~~~~~v~f~~v~Vp~~~vl~~~~~g~~~~~~~~~~~~~~~~a~~~G~~~~al~~a~~~~~~r~~~g~~~~~~~~vq~~ 240 (337)
++++++++.|+||+||++++|+.++.|+......+...++.+++.++|+++++++.+++|+++|.++|.|+.++|.+|++
T Consensus 199 ~g~~s~~v~~~~v~Vp~~~~lg~~~~g~~~~~~~~~~~r~~~~a~~lG~a~~~l~~~~~~~~~R~~~g~~~~~~~~v~~~ 278 (373)
T cd01158 199 RGSSTTELIFEDVRVPKENILGEEGEGFKIAMQTLDGGRIGIAAQALGIAQAALDAAVDYAKERKQFGKPIADFQGIQFK 278 (373)
T ss_pred CCCCceEEEeCcEEecHHHcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCCcHHHhHHHHHH
Confidence 99999999999999999999999988888777788889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCChhhhhHHHHHHHHHHHHHHHHHHHhhCCCcccCcchHHHHHHhhccCcccCC
Q 019707 241 TADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAG 320 (337)
Q Consensus 241 la~~~~~~~~~~a~~~~a~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~r~~rd~~~~~~~~g 320 (337)
++++...+++++++++.+++.++.+.+....+..+|.++++.+.++++.+++++|+.||.+++|++|+|||++.+.+++|
T Consensus 279 la~~~~~l~aa~~~~~~aa~~~~~~~~~~~~~~~~k~~~~~~a~~~~~~~~~~~G~~g~~~~~~l~r~~rd~~~~~~~~g 358 (373)
T cd01158 279 LADMATEIEAARLLTYKAARLKDNGEPFIKEAAMAKLFASEVAMRVTTDAVQIFGGYGYTKDYPVERYYRDAKITEIYEG 358 (373)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcCccCCCCChHHHHHHHhhhccccCC
Confidence 99999999999999999999988766556778899999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHh
Q 019707 321 TSEIRRMIIGRALLK 335 (337)
Q Consensus 321 ~~~~~~~~l~~~~~~ 335 (337)
++++++..+++.++|
T Consensus 359 ~~~~~~~~i~~~~~~ 373 (373)
T cd01158 359 TSEIQRLVIAKHLLK 373 (373)
T ss_pred HHHHHHHHHHHHHhC
Confidence 999999999999986
No 13
>TIGR03207 cyc_hxne_CoA_dh cyclohexanecarboxyl-CoA dehydrogenase. Cyclohex-1-ene-1carboxyl-CoA is an intermediate in the anaerobic degradation of benzoyl-CoA derived from varioius aromatic compounds, in Rhodopseudomonas palustris but not Thauera aromatica. The aliphatic compound cyclohexanecarboxylate, can be converted to the same intermediate in two steps. The first step is its ligation to coenzyme A. The second is the action of this enzyme, cyclohexanecarboxyl-CoA dehydrogenase.
Probab=100.00 E-value=2e-61 Score=444.75 Aligned_cols=329 Identities=32% Similarity=0.515 Sum_probs=307.0
Q ss_pred CccccccCCCCCccCCCCCCCHHHHHHHHHHHHhccCchhhHhhhhhhhHHHHHHhcCCHHHHhhhchhhhcCcceeEEE
Q 019707 1 MGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALA 80 (337)
Q Consensus 1 l~~~Gl~~l~~p~~~GG~~~~~~~~~~~~e~la~~~~~~a~~~~~~~~~~~~~l~~~g~~~~~~~~l~~i~~g~~~~~~~ 80 (337)
|++.||+++.+|++|||.|+++.+...++|++++.|+++++....+. ++...+..+++++|+++||+++.+|+.+.+++
T Consensus 41 l~~~G~~~l~vP~~~GG~g~~~~~~~~~~e~la~~~~s~~~~~~~~~-~~~~~l~~~g~~~~~~~~l~~~~~G~~~~~~a 119 (372)
T TIGR03207 41 MGEMGFIGPELPEEHGGLGMGCLAAGVIHEQIARADLSMSYVNLLAS-LNGQILAQHARPEIAKPWLGQLIAGEALFAIA 119 (372)
T ss_pred HHHCCCCcccCChhHCCCCCCHHHHHHHHHHHHhhCccHHHHHHhhh-HHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEE
Confidence 46899999999999999999999999999999999999988655554 66678889999999999999999999999999
Q ss_pred ecCCCCCCCcCCcEeEEEEeCCeEEEeeeeEeeeCCCCCCEEEEEEEeCCC-CCCCCeEEEEEeCCCCCeeecccccccc
Q 019707 81 MSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIK-AGSKGITAFIIEKGMPGFSTAQKLDKLG 159 (337)
Q Consensus 81 ~te~~~gs~~~~~~~~a~~~~~g~~l~G~k~~~s~~~~ad~~lv~a~~~~~-~~~~~~~~flvp~~~~Gv~~~~~~~~~g 159 (337)
+|||..|||..++.+++++++|||+|||+|.|+|++..+|+++|+++++++ ++..++++|+||++.|||++ .+|+.+|
T Consensus 120 ~tEp~~Gsd~~~~~t~a~~~~~g~~lnG~k~~vs~~~~ad~~lv~a~~~~~~~~~~~~~~~lVp~~~~gv~~-~~~~~~G 198 (372)
T TIGR03207 120 LTEPRGGSDAARLRLRAERDGDDYVLNGEKTSISAADQADAAVVFARTGSEAEGARGISAFLVPMDLPGITR-NRFDCHG 198 (372)
T ss_pred ecCCCCCcChhhCEEEEEEeCCEEEEEEEEEEEcCCCcCCEEEEEEEcCCCCCCCCceEEEEEcCCCCCeec-Ccchhcc
Confidence 999999999999999999999999999999999999999999999998643 23457899999999999997 5799999
Q ss_pred CCCCcceeEEEceeeeCCCCcccCCCchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcchHHHH
Q 019707 160 MRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQG 239 (337)
Q Consensus 160 ~~~~~~~~v~f~~v~Vp~~~vl~~~~~g~~~~~~~~~~~~~~~~a~~~G~~~~al~~a~~~~~~r~~~g~~~~~~~~vq~ 239 (337)
+++++++++.|+||+||++++++.++.|+......++..|+..+++++|+++++++.+++|+++|.+||+|+.++|.||+
T Consensus 199 ~r~~~~~~v~f~~v~Vp~~~~lg~~~~g~~~~~~~l~~~r~~~a~~~~G~a~~al~~a~~~~~~R~~fg~~i~~~q~v~~ 278 (372)
T TIGR03207 199 QRAIGRGSIFFENVRVPADHMLGNEGQGFVQVMQGFDFSRALIGLQVLAVARAALDETWRYVAERQAFGKPLSAFQGVSH 278 (372)
T ss_pred CCCCCeeEEEECceeccHHHcCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCchhhhHhHHH
Confidence 99999999999999999999999998898888788899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCChhhhhHHHHHHHHHHHHHHHHHHHhhCCCcccCcchHHHHHHhhccCcccC
Q 019707 240 KTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGA 319 (337)
Q Consensus 240 ~la~~~~~~~~~~a~~~~a~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~r~~rd~~~~~~~~ 319 (337)
+|+++...++++|++++.+++.++.+.+.....+++|.++++.+.++++.+++++||.||.++ |++|+|||++.+.+++
T Consensus 279 ~la~~~~~~~~ar~l~~~aa~~~~~~~~~~~~~~~aK~~~~~~a~~v~~~a~~v~Gg~g~~~~-~l~r~~rd~~~~~i~~ 357 (372)
T TIGR03207 279 PLADAETQVEAARLLCLQTLWLKDHGLPHTSEAAMCKWWAPKLAYDVIHQCLLTHGHGGYDRG-DMEQRLRDVLGFQIGD 357 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCCc-hHHHHHhHhhheeecC
Confidence 999999999999999999999888765556678899999999999999999999999999999 9999999999999999
Q ss_pred ChHHHHHHHHHHH
Q 019707 320 GTSEIRRMIIGRA 332 (337)
Q Consensus 320 g~~~~~~~~l~~~ 332 (337)
|++++++..|++.
T Consensus 358 Gt~~~~~~~i~~~ 370 (372)
T TIGR03207 358 GTAQIMKTIIARH 370 (372)
T ss_pred CHHHHHHHHHhhc
Confidence 9999999999874
No 14
>cd01161 VLCAD Very long chain acyl-CoA dehydrogenase. VLCAD is an acyl-CoA dehydrogenase (ACAD), which is found in the mitochondria of eukaryotes and in some bacteria. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. VLCAD acts as a homodimer.
Probab=100.00 E-value=1.4e-60 Score=444.03 Aligned_cols=335 Identities=36% Similarity=0.610 Sum_probs=311.2
Q ss_pred CccccccCCCCCccCCCCCCCHHHHHHHHHHHHhccCchhhHhhhhhhhHHHHHHhcCCHHHHhhhchhhhcCcceeEEE
Q 019707 1 MGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALA 80 (337)
Q Consensus 1 l~~~Gl~~l~~p~~~GG~~~~~~~~~~~~e~la~~~~~~a~~~~~~~~~~~~~l~~~g~~~~~~~~l~~i~~g~~~~~~~ 80 (337)
|++.||+++.+|++|||.++++.+...++|++++ |+++++.+.+|...+...+..+++++|+++|++++.+|+.+++++
T Consensus 65 l~~~Gl~~l~vP~~~GG~g~~~~~~~~v~e~l~~-~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a 143 (409)
T cd01161 65 LKELGLFGLQVPEEYGGLGLNNTQYARLAEIVGM-DLGFSVTLGAHQSIGFKGILLFGTEAQKEKYLPKLASGEWIAAFA 143 (409)
T ss_pred HHhCCCCCCCCChhhCCCCCCHHHHHHHHHHHhh-ChHHHHHHHHhhhhhHHHHHHcCCHHHHHHHhHHHhCCCeeEEEE
Confidence 4689999999999999999999999999999999 999999888886455556788999999999999999999999999
Q ss_pred ecCCCCCCCcCCcEeEEEEe--CCeEEEeeeeEeeeCCCCCCEEEEEEEeCC--CCC--CCCeEEEEEeCCCCCeeeccc
Q 019707 81 MSEPNAGSDVVGMKCKADRV--DGGYIINGNKMWCTNGPVAQTLVVYAKTDI--KAG--SKGITAFIIEKGMPGFSTAQK 154 (337)
Q Consensus 81 ~te~~~gs~~~~~~~~a~~~--~~g~~l~G~k~~~s~~~~ad~~lv~a~~~~--~~~--~~~~~~flvp~~~~Gv~~~~~ 154 (337)
+|||..|+|...+.++++++ ++||+|||+|.|+||+..||+++|.+++++ +++ .+++++|+||.+.|||++.+.
T Consensus 144 ~tEp~~Gs~~~~~~t~a~~~~~g~g~~l~G~K~~vs~~~~Ad~~lv~ar~~~~~~~g~~~~~~~~flvp~~~~gv~~~~~ 223 (409)
T cd01161 144 LTEPSSGSDAASIRTTAVLSEDGKHYVLNGSKIWITNGGIADIFTVFAKTEVKDATGSVKDKITAFIVERSFGGVTNGPP 223 (409)
T ss_pred ecCCCCCCChhhCeeEEEEcCCCCEEEEEeEEEeecCCCcCCEEEEEEEcCCCCCCCCCCCceEEEEEeCCCCCcccCCc
Confidence 99999999999999999985 457999999999999999999999999762 122 357889999999999999999
Q ss_pred cccccCCCCcceeEEEceeeeCCCCcccCCCchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcc
Q 019707 155 LDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEF 234 (337)
Q Consensus 155 ~~~~g~~~~~~~~v~f~~v~Vp~~~vl~~~~~g~~~~~~~~~~~~~~~~a~~~G~~~~al~~a~~~~~~r~~~g~~~~~~ 234 (337)
|+.+||++++++++.|+||+||.+++++.++.|+......+...|+..++.++|+++++++.+++|+++|.++|.|+.++
T Consensus 224 ~~~~G~~g~~s~~v~~~~v~Vp~~~~lg~~g~g~~~~~~~l~~~r~~~aa~~lG~a~~al~~a~~~a~~R~~fg~~l~~~ 303 (409)
T cd01161 224 EKKMGIKGSNTAEVYFEDVKIPVENVLGEVGDGFKVAMNILNNGRFGMGAALIGTMKRCIEKAVDYANNRKQFGKKIHEF 303 (409)
T ss_pred ccccCCCCCCceEEEeccEEECHHHcCCCCChHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhceeCCccHHHh
Confidence 99999999999999999999999999999998988888889999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CChhhhhHHHHHHHHHHHHHHHHHHHhhCCCcccCcchHHHHHHhh
Q 019707 235 QFIQGKTADMYTALQSSRSYVYSVARDCDNGK--VDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDA 312 (337)
Q Consensus 235 ~~vq~~la~~~~~~~~~~a~~~~a~~~~~~~~--~~~~~~~~~k~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~r~~rd~ 312 (337)
|.+|++|+++.+.++++|++++.+++.+++.. +....++.+|.++++.+.++++.+++++||.||.+++|++|+|||+
T Consensus 304 q~vq~~la~~~~~~~aar~l~~~a~~~~d~~~~~~~~~~~~~aK~~a~~~a~~v~~~a~~~~Gg~G~~~~~~l~r~~Rd~ 383 (409)
T cd01161 304 GLIQEKLANMAILQYATESMAYMTSGNMDRGLKAEYQIEAAISKVFASEAAWLVVDEAIQIHGGMGFMREYGVERVLRDL 383 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCCCcHHHHHHhh
Confidence 99999999999999999999999999888765 2456789999999999999999999999999999999999999999
Q ss_pred ccCcccCChHHHHHHHHHHHHHhc
Q 019707 313 KLYEIGAGTSEIRRMIIGRALLKQ 336 (337)
Q Consensus 313 ~~~~~~~g~~~~~~~~l~~~~~~~ 336 (337)
++..+++|++++++..+++.++++
T Consensus 384 ~~~~~~~G~~~~~~~~ia~~~l~~ 407 (409)
T cd01161 384 RIFRIFEGTNEILRLFIALTGLQH 407 (409)
T ss_pred hcceeecCHHHHHHHHHHHHHhhh
Confidence 999999999999999999998874
No 15
>PTZ00461 isovaleryl-CoA dehydrogenase; Provisional
Probab=100.00 E-value=1.5e-60 Score=443.58 Aligned_cols=331 Identities=42% Similarity=0.725 Sum_probs=309.1
Q ss_pred CccccccCCCCCccCCCCCCCHHHHHHHHHHHHhccCchhhHhhhhhhhHHHHHHhcCCHHHHhhhchhhhcCcceeEEE
Q 019707 1 MGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALA 80 (337)
Q Consensus 1 l~~~Gl~~l~~p~~~GG~~~~~~~~~~~~e~la~~~~~~a~~~~~~~~~~~~~l~~~g~~~~~~~~l~~i~~g~~~~~~~ 80 (337)
|++.||+++.+|++|||.|+++.+...++|++++.|+++++.+..|...+...+..+++++||++|++++.+|+.+++++
T Consensus 77 l~~~Gl~~l~vP~~~GG~g~~~~~~~~~~e~la~~~~s~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~~~~G~~~~~~a 156 (410)
T PTZ00461 77 LGDLGVMGVTVPEADGGAGMDAVAAVIIHHELSKYDPGFCLAYLAHSMLFVNNFYYSASPAQRARWLPKVLTGEHVGAMG 156 (410)
T ss_pred HHHCCCCcccCChhhCCCCCCHHHHHHHHHHHHhhCchHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEE
Confidence 46899999999999999999999999999999999998887777776456667888999999999999999999999999
Q ss_pred ecCCCCCCCcCCcEeEEEEeCC-eEEEeeeeEeeeCCCCCCEEEEEEEeCCCCCCCCeEEEEEeCCCCCeeecccccccc
Q 019707 81 MSEPNAGSDVVGMKCKADRVDG-GYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLG 159 (337)
Q Consensus 81 ~te~~~gs~~~~~~~~a~~~~~-g~~l~G~k~~~s~~~~ad~~lv~a~~~~~~~~~~~~~flvp~~~~Gv~~~~~~~~~g 159 (337)
+|||..|+|.....|+++++++ ||+|||.|.|+||+..||+++|+++++ +++++|+||++.|||++.+.|+.+|
T Consensus 157 ~tEp~~Gsd~~~~~t~a~~~~~gg~~L~G~K~~vs~a~~Ad~~lv~a~~~-----~~~~~flVp~~~~Gv~v~~~~~~~G 231 (410)
T PTZ00461 157 MSEPGAGTDVLGMRTTAKKDSNGNYVLNGSKIWITNGTVADVFLIYAKVD-----GKITAFVVERGTKGFTQGPKIDKCG 231 (410)
T ss_pred ecCCCCCCChHHCeEEEEEcCCCeEEEEeEEEeECCCccCCEEEEEEEeC-----CceEEEEEeCCCCCeecCCCCcccC
Confidence 9999999999999999999865 799999999999999999999999864 2478999999999999999999999
Q ss_pred CCCCcceeEEEceeeeCCCCcccCCCchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcchHHHH
Q 019707 160 MRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQG 239 (337)
Q Consensus 160 ~~~~~~~~v~f~~v~Vp~~~vl~~~~~g~~~~~~~~~~~~~~~~a~~~G~~~~al~~a~~~~~~r~~~g~~~~~~~~vq~ 239 (337)
+++++++++.|+||+||++++|+.++.|+......+...++.+++.++|+++++++.+++|+++|.++|+|+.++|.+|+
T Consensus 232 ~r~~~~~~l~f~~v~Vp~~~~lg~~g~g~~~~~~~~~~~r~~~aa~~~G~a~~al~~a~~ya~~R~~fg~~i~~~q~vq~ 311 (410)
T PTZ00461 232 MRASHMCQLFFEDVVVPAENLLGEEGKGMVGMMRNLELERVTLAAMAVGIAERSVELMTSYASERKAFGKPISNFGQIQR 311 (410)
T ss_pred CCCCceEEEEEcceecCHHHhCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeecCcCHHhhHHHHH
Confidence 99999999999999999999999998898877777889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCChhhhhHHHHHHHHHHHHHHHHHHHhhCCCcccCcchHHHHHHhhccCcccC
Q 019707 240 KTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGA 319 (337)
Q Consensus 240 ~la~~~~~~~~~~a~~~~a~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~r~~rd~~~~~~~~ 319 (337)
+|+++...++++|++++.+++.++.+.+.....+++|.++++.+.++++.+++++||.||.+++|++|+|||++.+.+.+
T Consensus 312 ~la~~~~~l~aar~l~~~aa~~~~~~~~~~~~~~~aK~~a~~~a~~v~~~a~qv~Gg~G~~~~~~l~r~~Rda~~~~i~~ 391 (410)
T PTZ00461 312 YIAEGYADTEAAKALVYSVSHNVHPGNKNRLGSDAAKLFATPIAKKVADSAIQVMGGMGYSRDMPVERLWRDAKLLEIGG 391 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCHHHHHHHHHhhheecc
Confidence 99999999999999999999988776545567788999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHhc
Q 019707 320 GTSEIRRMIIGRALLKQ 336 (337)
Q Consensus 320 g~~~~~~~~l~~~~~~~ 336 (337)
|++++++..|++.++++
T Consensus 392 Gt~e~~~~~i~~~~~~~ 408 (410)
T PTZ00461 392 GTIEAHHKNITKDLLKG 408 (410)
T ss_pred CHHHHHHHHHHHHHHhh
Confidence 99999999999988763
No 16
>cd01155 ACAD_FadE2 Acyl-CoA dehydrogenases similar to fadE2. FadE2-like Acyl-CoA dehydrogenase (ACAD). Acyl-CoA dehydrogenases (ACAD) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACAD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. ACAD's are generally homotetramers and have an active site glutamate at a conserved position.
Probab=100.00 E-value=1.1e-59 Score=436.02 Aligned_cols=334 Identities=25% Similarity=0.347 Sum_probs=301.9
Q ss_pred ccccccCCCCCccCCCCCCCHHHHHHHHHHHHhccCc-hhhHhhhhhhhHHHHHHhcCCHHHHhhhchhhhcCcceeEEE
Q 019707 2 GNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGS-VGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALA 80 (337)
Q Consensus 2 ~~~Gl~~l~~p~~~GG~~~~~~~~~~~~e~la~~~~~-~a~~~~~~~~~~~~~l~~~g~~~~~~~~l~~i~~g~~~~~~~ 80 (337)
++.||+++.+|++|||.|+++.+.+.++|++++.+.. ..+....+...+...+..+++++|+++|++++.+|+.+++++
T Consensus 51 ~~~G~~~l~~P~~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a 130 (394)
T cd01155 51 KAEGLWNLFLPEVSGLSGLTNLEYAYLAEETGRSFFAPEVFNCQAPDTGNMEVLHRYGSEEQKKQWLEPLLDGKIRSAFA 130 (394)
T ss_pred HhCCCCCCCCChhhCCCCcCHHHHHHHHHHHhhhcccchheeecccccccHHHHHHhCCHHHHHHHHHHHhCCCeEEEEE
Confidence 5899999999999999999999999999999998633 332222222134467899999999999999999999999999
Q ss_pred ecCCC-CCCCcCCcEeEEEEeCCeEEEeeeeEeeeCCCC--CCEEEEEEEeCCC--CCCCCeEEEEEeCCCCCeeecccc
Q 019707 81 MSEPN-AGSDVVGMKCKADRVDGGYIINGNKMWCTNGPV--AQTLVVYAKTDIK--AGSKGITAFIIEKGMPGFSTAQKL 155 (337)
Q Consensus 81 ~te~~-~gs~~~~~~~~a~~~~~g~~l~G~k~~~s~~~~--ad~~lv~a~~~~~--~~~~~~~~flvp~~~~Gv~~~~~~ 155 (337)
+|||. .|+|...+.+++++++|||+|||+|.|+||+.+ +|+++|+++++++ ++++++++|+||++.||+++.++|
T Consensus 131 ~tE~~~~gsd~~~~~t~a~~~~~g~~LnG~k~~vs~~~~~~a~~~~v~a~~~~~~~~~~~~~~~flVp~~~~Gv~i~~~~ 210 (394)
T cd01155 131 MTEPDVASSDATNIECSIERDGDDYVINGRKWWSSGAGDPRCKIAIVMGRTDPDGAPRHRQQSMILVPMDTPGVTIIRPL 210 (394)
T ss_pred eCCCCCCCCchhhCEEEEEEECCEEEEEEEEEEEcCCCCCCCCEEEEEEEeCCCcCCCCCceEEEEEeCCCCCeEeeccc
Confidence 99997 579998999999999999999999999999954 8899999988643 234578999999999999999999
Q ss_pred ccccCCC--CcceeEEEceeeeCCCCcccCCCchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCc
Q 019707 156 DKLGMRG--SDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGE 233 (337)
Q Consensus 156 ~~~g~~~--~~~~~v~f~~v~Vp~~~vl~~~~~g~~~~~~~~~~~~~~~~a~~~G~~~~al~~a~~~~~~r~~~g~~~~~ 233 (337)
+.+||++ +.++++.|+||+||++++++.++.|+......+...|+..++.++|+++++++.+++|+++|.++|.|+.+
T Consensus 211 ~~~G~r~~~t~s~~v~f~dv~Vp~~~~lg~~~~g~~~~~~~~~~~r~~~~a~~lG~a~~al~~~~~~~~~R~~fg~~i~~ 290 (394)
T cd01155 211 SVFGYDDAPHGHAEITFDNVRVPASNLILGEGRGFEIAQGRLGPGRIHHCMRLIGAAERALELMCQRAVSREAFGKKLAQ 290 (394)
T ss_pred cccCCCCCCCCeeEEEEccEEecHHHcCCCCChHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCccCCCcHhh
Confidence 9999997 67899999999999999999988898888888888999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CChhhhhHHHHHHHHHHHHHHHHHHHhhCCCcccCcchHHHHHHh
Q 019707 234 FQFIQGKTADMYTALQSSRSYVYSVARDCDNGK--VDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRD 311 (337)
Q Consensus 234 ~~~vq~~la~~~~~~~~~~a~~~~a~~~~~~~~--~~~~~~~~~k~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~r~~rd 311 (337)
+|.+|++|+++...++++|++++.+++.+++.. .....++++|.++++.+.++++.+++++||.||.+++|++|+|||
T Consensus 291 ~q~vq~~la~~~~~l~aar~l~~~aa~~~~~~~~~~~~~~~~~aK~~~~~~a~~~~~~a~~~~Gg~g~~~~~~l~r~~Rd 370 (394)
T cd01155 291 HGVVAHWIAKSRIEIEQARLLVLKAAHMIDTVGNKAARKEIAMIKVAAPRMALKIIDRAIQVHGAAGVSQDTPLANMYAW 370 (394)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCceecCCCHHHHHHHH
Confidence 999999999999999999999999999888743 245778999999999999999999999999999999999999999
Q ss_pred hccCcccCChHHHHHHHHHHHHHh
Q 019707 312 AKLYEIGAGTSEIRRMIIGRALLK 335 (337)
Q Consensus 312 ~~~~~~~~g~~~~~~~~l~~~~~~ 335 (337)
++.+.+++|++++++..|++.++|
T Consensus 371 a~~~~i~~Gt~~~~~~~ia~~~~~ 394 (394)
T cd01155 371 ARTLRIADGPDEVHLRSIARMELK 394 (394)
T ss_pred HhhceeecCHHHHHHHHHHHHHhC
Confidence 999999999999999999998864
No 17
>PLN02526 acyl-coenzyme A oxidase
Probab=100.00 E-value=1.3e-59 Score=437.06 Aligned_cols=331 Identities=29% Similarity=0.495 Sum_probs=307.8
Q ss_pred CccccccCCCCCccCCCCCCCHHHHHHHHHHHHhccCchhhHhhhhhhhHHHHHHhcCCHHHHhhhchhhhcCcceeEEE
Q 019707 1 MGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALA 80 (337)
Q Consensus 1 l~~~Gl~~l~~p~~~GG~~~~~~~~~~~~e~la~~~~~~a~~~~~~~~~~~~~l~~~g~~~~~~~~l~~i~~g~~~~~~~ 80 (337)
|++.||+++.+ ++|||.|+++.+.+.++|++++.|++++..+..|...+...+..+++++|+++|++++.+|+.+++++
T Consensus 69 l~~~G~~~~~v-~~~GG~G~~~~~~~~~~e~la~~~~s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a 147 (412)
T PLN02526 69 LGSLGIAGGTI-KGYGCPGLSITASAIATAEVARVDASCSTFILVHSSLAMLTIALCGSEAQKQKYLPSLAQLDTVACWA 147 (412)
T ss_pred HHHCCCCcCcc-cccCCCCcCHHHHHHHHHHHHhhCchHHHHHHHhhhhHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEE
Confidence 46889999999 99999999999999999999999999877666776456668999999999999999999999999999
Q ss_pred ecCCCCCCCcCCcEeEEEEeCCeEEEeeeeEeeeCCCCCCEEEEEEEeCCCCCCCCeEEEEEeCCCCCeeeccccccccC
Q 019707 81 MSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGM 160 (337)
Q Consensus 81 ~te~~~gs~~~~~~~~a~~~~~g~~l~G~k~~~s~~~~ad~~lv~a~~~~~~~~~~~~~flvp~~~~Gv~~~~~~~~~g~ 160 (337)
++||+.|+|...+.+++++++|||+|||+|.|+|++..||+++|+++++++ +++.+|+||.+.|||++.+.|+.+|+
T Consensus 148 ~tEp~~Gsd~~~~~t~a~~~~gg~~lnG~K~~vs~~~~Ad~~lv~a~~~~~---~~~~~flV~~~~~Gv~~~~~~~~~G~ 224 (412)
T PLN02526 148 LTEPDYGSDASSLNTTATKVEGGWILNGQKRWIGNSTFADVLVIFARNTTT---NQINGFIVKKGAPGLKATKIENKIGL 224 (412)
T ss_pred ecCCCCCCChhhCeeEEEEECCEEEEEEEEeeecCCCccCEEEEEEEeCCC---CCeEEEEEcCCCCCeEcCCCCCccCc
Confidence 999999999999999999999999999999999999999999999997542 45789999999999999999999999
Q ss_pred CCCcceeEEEceeeeCCCCcccCCCchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcchHHHHH
Q 019707 161 RGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGK 240 (337)
Q Consensus 161 ~~~~~~~v~f~~v~Vp~~~vl~~~~~g~~~~~~~~~~~~~~~~a~~~G~~~~al~~a~~~~~~r~~~g~~~~~~~~vq~~ 240 (337)
+++++++++|+||+||++++|+..+ ++......+...|+.+++.++|+++++++.+++|+++|.++|.|+.++|.+|++
T Consensus 225 r~t~s~~v~f~~v~Vp~~~~l~~~~-~~~~~~~~~~~~r~~~aa~~lG~a~~al~~a~~~a~~R~~fg~~i~~~q~vq~~ 303 (412)
T PLN02526 225 RMVQNGDIVLKDVFVPDEDRLPGVN-SFQDTNKVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQEK 303 (412)
T ss_pred CCCCeeEEEEeeEEECHHHhCCCcc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeeCCCchhhhHHHHHH
Confidence 9999999999999999999997653 566667788899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCChhhhhHHHHHHHHHHHHHHHHHHHhhCCCcccCcchHHHHHHhhccCcccCC
Q 019707 241 TADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAG 320 (337)
Q Consensus 241 la~~~~~~~~~~a~~~~a~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~r~~rd~~~~~~~~g 320 (337)
++++..+++++|++++++++.++.+.+.....+++|.++++.+.++++.+++++||.||.+++|++|+|||++...+++|
T Consensus 304 la~~~~~l~aar~~~~~aa~~~d~~~~~~~~~~~aK~~a~~~a~~v~~~a~~~~Gg~G~~~~~~l~r~~RD~~~~~~~~G 383 (412)
T PLN02526 304 LVRMLGNIQAMFLVGWRLCKLYESGKMTPGHASLGKAWITKKARETVALGRELLGGNGILADFLVAKAFCDLEPIYTYEG 383 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCcCHHHHHHhcccceEecCC
Confidence 99999999999999999999888765456678899999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhc
Q 019707 321 TSEIRRMIIGRALLKQ 336 (337)
Q Consensus 321 ~~~~~~~~l~~~~~~~ 336 (337)
++++++..|+|.+++.
T Consensus 384 ~~ev~~~~i~~~~l~~ 399 (412)
T PLN02526 384 TYDINALVTGREITGI 399 (412)
T ss_pred HHHHHHHHHHHHHhcC
Confidence 9999999999999763
No 18
>TIGR03203 pimD_small pimeloyl-CoA dehydrogenase, small subunit. Members of this protein family are the PimD proteins of species such as Rhodopseudomonas palustris, Bradyrhizobium japonicum. The pimFABCDE operon encodes proteins for the metabolism of straight chain dicarboxylates of seven to fourteen carbons. Especially relevant is pimeloyl-CoA, basis of the gene symbol, as it is a catabolite of benzoyl-CoA degradation, which occurs in Rhodopseudomonas palustris.
Probab=100.00 E-value=5.8e-60 Score=434.43 Aligned_cols=327 Identities=26% Similarity=0.389 Sum_probs=297.4
Q ss_pred CccccccCCCCCccCCCCCCCHHHHHHHHHHHHhccCchhhHhhhhhhhHHHHHHhcCCHHHHhhhchhhhcCcceeEEE
Q 019707 1 MGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALA 80 (337)
Q Consensus 1 l~~~Gl~~l~~p~~~GG~~~~~~~~~~~~e~la~~~~~~a~~~~~~~~~~~~~l~~~g~~~~~~~~l~~i~~g~~~~~~~ 80 (337)
|++.||+++.+|++|||.|++..+.+.++|++++.+.+... + .+..++...+..+|+++||++|||++.+|+.+.+++
T Consensus 46 l~e~G~~~l~vPe~~GG~G~~~~~~~~v~eel~~~~~~~~~-~-~~~~~~~~~l~~~g~~~qk~~~L~~l~~G~~~~a~a 123 (378)
T TIGR03203 46 LAEQGLLGLPFSEADGGFGAGSVETMIVMEALGKALVLEPY-L-ATVVIGGGFLRHAGSAAQKAAHLPGIIDGSKTFAFA 123 (378)
T ss_pred HHHCCCcccccchhcCCCCCCHHHHHHHHHHHhCcccchHH-H-HHHHHHHHHHHHcCCHHHHHHHHHHHhCCChhheee
Confidence 46899999999999999999999999999999997654432 2 222245567889999999999999999999999999
Q ss_pred ecCCCCCCCcCCcEeEEEEeCCeEEEeeeeEeeeCCCCCCEEEEEEEeCCC-CCCCCeEEEEEeCCCCCeeecccccccc
Q 019707 81 MSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIK-AGSKGITAFIIEKGMPGFSTAQKLDKLG 159 (337)
Q Consensus 81 ~te~~~gs~~~~~~~~a~~~~~g~~l~G~k~~~s~~~~ad~~lv~a~~~~~-~~~~~~~~flvp~~~~Gv~~~~~~~~~g 159 (337)
+|||+.|||...+.|++++++|+|+|||+|.|+|++..||+++|.++++++ ++.+++++|+||++.|||++.+.+...|
T Consensus 124 ~tEp~~gsd~~~~~t~a~~~g~~~~l~G~K~~vt~a~~Ad~~lv~ar~~~~~~~~~g~~~flV~~~~~Gv~~~~~~~~~g 203 (378)
T TIGR03203 124 QLEKNSRYDLGDVSTTAKKTGDGWVIDGEKFVVLNGETADTLIVTARTKGARRDRTGIGVFLVPAGAKGVTIKGYPTQDG 203 (378)
T ss_pred ecCCCCCCCcccceEEEEEcCCEEEEEeEEEEecCCccCCEEEEEEecCCCCCCCCceEEEEEECCCCCceeccccccCC
Confidence 999999999999999999999999999999999999999999999998643 2456789999999999999976666555
Q ss_pred CCCCcceeEEEceeeeCCCCcccCCCchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcchHHHH
Q 019707 160 MRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQG 239 (337)
Q Consensus 160 ~~~~~~~~v~f~~v~Vp~~~vl~~~~~g~~~~~~~~~~~~~~~~a~~~G~~~~al~~a~~~~~~r~~~g~~~~~~~~vq~ 239 (337)
+ .++++.||||+||+++++|.++.|+..+...+...|+..++.++|+++++++.+++|+++|.+||+||.++|.||+
T Consensus 204 ~---~~~~l~fd~v~vp~~~~lg~~~~g~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~qFG~pi~~~Q~vq~ 280 (378)
T TIGR03203 204 L---HAADITFTGVVVGADAAIGDPENALPLIERVVDDARAALCAEAVGLMDESLKTTVEYIKTRKQFGVPIGSFQVLQH 280 (378)
T ss_pred C---ceeeEEECCCcccHHhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCeecCccchhhHHHHH
Confidence 4 5689999999999999999999999989999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCC--CChhhhhHHHHHHHHHHHHHHHHHHHhhCCCcccCcchHHHHHHhhccCcc
Q 019707 240 KTADMYTALQSSRSYVYSVARDCDNGK--VDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEI 317 (337)
Q Consensus 240 ~la~~~~~~~~~~a~~~~a~~~~~~~~--~~~~~~~~~k~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~r~~rd~~~~~~ 317 (337)
+|++|...++++|++++.+++..+.+. +....++++|.++++.+.++++.++|+|||.||++++|++|+|||++.+.+
T Consensus 281 ~lAdm~~~~e~ar~l~~~aa~~~~~~~~~~~~~~~a~aK~~a~e~a~~va~~aiqi~Gg~G~t~e~~~~~~~r~a~~~~~ 360 (378)
T TIGR03203 281 RAADMFVAVEQARSMAMFATMASDFDDAKERANAIAAAKVQIGKSLKFVGQQSIQLHGGIGMTMEAKIGHYFKRLTMIEH 360 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccceeecccchHHHHHHHHHHHHH
Confidence 999999999999999999998777532 345678999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHH
Q 019707 318 GAGTSEIRRMIIGRA 332 (337)
Q Consensus 318 ~~g~~~~~~~~l~~~ 332 (337)
.+|++++++..|++.
T Consensus 361 ~~G~~~~~~~~~~~~ 375 (378)
T TIGR03203 361 TFGDTDFHLSRVSAA 375 (378)
T ss_pred hcCCHHHHHHHHHHh
Confidence 999999999999873
No 19
>PRK09463 fadE acyl-CoA dehydrogenase; Reviewed
Probab=100.00 E-value=1.8e-58 Score=447.45 Aligned_cols=328 Identities=24% Similarity=0.331 Sum_probs=299.7
Q ss_pred CccccccCCCCCccCCCCCCCHHHHHHHHHHHHhccCchhhHhhhhhhhH-HHHHHhcCCHHHHhhhchhhhcCcceeEE
Q 019707 1 MGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLC-INQLVRHGSPAQKDKYLPKLISGEHVGAL 79 (337)
Q Consensus 1 l~~~Gl~~l~~p~~~GG~~~~~~~~~~~~e~la~~~~~~a~~~~~~~~~~-~~~l~~~g~~~~~~~~l~~i~~g~~~~~~ 79 (337)
|++.||+++.+|++|||.|++..+.+.++|++++.|++++..+..|+++. ...|..+|+++||++|||++++|+.+.|+
T Consensus 118 L~e~G~~gl~IPeeyGG~Gls~~~~a~v~eeLg~~~~s~a~~~~v~~slg~~~lL~~~GteeQK~~yLp~La~Ge~i~af 197 (777)
T PRK09463 118 IKEHGFFGMIIPKEYGGLEFSAYAHSRVLQKLASRSGTLAVTVMVPNSLGPGELLLHYGTDEQKDHYLPRLARGEEIPCF 197 (777)
T ss_pred HHHCCCCcCCCchhhCCCCCCHHHHHHHHHHHHhhCcchhHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCceeEE
Confidence 46899999999999999999999999999999999998887666766444 35788999999999999999999999999
Q ss_pred EecCCCCCCCcCCcEeE-----EEEeCC---eEEEeeeeEeeeCCCCCCEEEEEEEeCCC------CCCCCeEEEEEeCC
Q 019707 80 AMSEPNAGSDVVGMKCK-----ADRVDG---GYIINGNKMWCTNGPVAQTLVVYAKTDIK------AGSKGITAFIIEKG 145 (337)
Q Consensus 80 ~~te~~~gs~~~~~~~~-----a~~~~~---g~~l~G~k~~~s~~~~ad~~lv~a~~~~~------~~~~~~~~flvp~~ 145 (337)
++|||..|||.....++ ++++++ ||+|||+|.|+|+++.||+++|++++.++ +++.++++|+||.+
T Consensus 198 AlTEP~aGSDaa~i~Tta~~~~a~~dGd~~~g~vLNG~K~~IT~a~~Ad~l~V~ar~~dp~~~~g~~~~~Git~fLVp~d 277 (777)
T PRK09463 198 ALTSPEAGSDAGSIPDTGVVCKGEWQGEEVLGMRLTWNKRYITLAPIATVLGLAFKLYDPDGLLGDKEDLGITCALIPTD 277 (777)
T ss_pred EecCCCcCCCcccccccceeeeeeecCCcccceEEEEEEEeeCCCCccCEEEEEEEecCcccccCCCCCCceEEEEEECC
Confidence 99999999999887754 345555 69999999999999999999999986432 23567999999999
Q ss_pred CCCeeeccccccccCCCCcceeEEEceeeeCCCCcccCC---CchHHHHHHhhhHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 019707 146 MPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQE---GKGVYVMMSGLDLER-LVLAAGPLGIMQACLDVVLPYV 221 (337)
Q Consensus 146 ~~Gv~~~~~~~~~g~~~~~~~~v~f~~v~Vp~~~vl~~~---~~g~~~~~~~~~~~~-~~~~a~~~G~~~~al~~a~~~~ 221 (337)
.|||++.+.++.+|++ ..++.+.|+||+||.+++||.. +.|+..+...+..+| +.+++.++|+++.+++.+++|+
T Consensus 278 ~pGV~ig~~~~~lG~r-~~~g~v~fddV~VP~d~lLG~~~~~G~G~~~l~~~L~~gR~i~laA~avG~ar~al~~Av~YA 356 (777)
T PRK09463 278 TPGVEIGRRHFPLNVP-FQNGPTRGKDVFIPLDYIIGGPKMAGQGWRMLMECLSVGRGISLPSNSTGGAKLAALATGAYA 356 (777)
T ss_pred CCCeEecccccccCcc-cccceEEeeeeecCHHHhcccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998 5689999999999999999874 889999999999999 8999999999999999999999
Q ss_pred HhhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChhhhhHHHHHHHHHHHHHHHHHHHhhCCCcccC
Q 019707 222 RQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVN 301 (337)
Q Consensus 222 ~~r~~~g~~~~~~~~vq~~la~~~~~~~~~~a~~~~a~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~G~~~~~~ 301 (337)
++|.+||.||.++|.||++|++|...+++++++.+.+++.+|.+......++++|+++++.+.++++.++|++||.||++
T Consensus 357 ~~R~QFG~pIg~fQaVQ~~LAdma~~~~a~eaar~~~a~~~D~G~~~~~~aA~AK~~atE~a~~va~~AmQIhGG~G~~~ 436 (777)
T PRK09463 357 RIRRQFKLPIGKFEGIEEPLARIAGNAYLMDAARTLTTAAVDLGEKPSVLSAIAKYHLTERGRQVINDAMDIHGGKGICL 436 (777)
T ss_pred HHHHHcCCChhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhchhheeC
Confidence 99999999999999999999999999999999999998888887655678899999999999999999999999999999
Q ss_pred c--chHHHHHHhhccCcccCChHHHHHHHH
Q 019707 302 E--YATGRLLRDAKLYEIGAGTSEIRRMII 329 (337)
Q Consensus 302 ~--~~~~r~~rd~~~~~~~~g~~~~~~~~l 329 (337)
+ +|++|+|||++...+.+|+|++++..|
T Consensus 437 ~~~~~leR~yRdari~~i~eGtn~i~r~~i 466 (777)
T PRK09463 437 GPNNFLARAYQAAPIAITVEGANILTRSLM 466 (777)
T ss_pred CCCChHHHHHHhCcchheeCcHHHHHHHHH
Confidence 7 999999999999999999999999886
No 20
>PRK13026 acyl-CoA dehydrogenase; Reviewed
Probab=100.00 E-value=1.7e-57 Score=439.05 Aligned_cols=325 Identities=23% Similarity=0.290 Sum_probs=292.2
Q ss_pred CccccccCCCCCccCCCCCCCHHHHHHHHHHHHhccCchhhHhhhhhhhH-HHHHHhcCCHHHHhhhchhhhcCcceeEE
Q 019707 1 MGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLC-INQLVRHGSPAQKDKYLPKLISGEHVGAL 79 (337)
Q Consensus 1 l~~~Gl~~l~~p~~~GG~~~~~~~~~~~~e~la~~~~~~a~~~~~~~~~~-~~~l~~~g~~~~~~~~l~~i~~g~~~~~~ 79 (337)
|++.||+++.+|++|||.|++..+.+.++|++++.+.+++..+..|+.+. ...|..+|+++||++|||++++|+.+.|+
T Consensus 117 Lae~Gl~gl~IPeeyGGlG~s~~~~a~V~eela~~~~s~a~~~~v~~slg~~~lL~~~GTeEQK~~yLP~LAsGe~i~af 196 (774)
T PRK13026 117 LKKEGFFALIIPKEYGGKGFSAYANSTIVSKIATRSVSAAVTVMVPNSLGPGELLTHYGTQEQKDYWLPRLADGTEIPCF 196 (774)
T ss_pred HHHCCCCcCCCChhhCCCCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhCCHHHHHhhhHHHhCCCeEEEE
Confidence 46899999999999999999999999999999999988887666665444 45788999999999999999999999999
Q ss_pred EecCCCCCCCcCCcEeEEE-----EeCC---eEEEeeeeEeeeCCCCCCEEEEEEEeCCC------CCCCCeEEEEEeCC
Q 019707 80 AMSEPNAGSDVVGMKCKAD-----RVDG---GYIINGNKMWCTNGPVAQTLVVYAKTDIK------AGSKGITAFIIEKG 145 (337)
Q Consensus 80 ~~te~~~gs~~~~~~~~a~-----~~~~---g~~l~G~k~~~s~~~~ad~~lv~a~~~~~------~~~~~~~~flvp~~ 145 (337)
++|||..|||....+++++ ++++ ||+|||+|.|+|+++.||+++|.+++.++ +++.++++|+||.+
T Consensus 197 AlTEP~aGSDaasi~Ttav~t~a~~dGd~~~gwvLNG~K~~IT~A~~Ad~~~v~ar~~dpd~~~g~~~~~GiT~fLVp~d 276 (774)
T PRK13026 197 ALTGPEAGSDAGAIPDTGIVCRGEFEGEEVLGLRLTWDKRYITLAPVATVLGLAFKLRDPDGLLGDKKELGITCALIPTD 276 (774)
T ss_pred EecCCCCCCchhcccceeeeeeeeecCCccccEEEEEEEEeecCccccCEEEEEEEeeCccccccCCCCCceEEEEEECC
Confidence 9999999999988886553 4666 69999999999999999999888765332 23568999999999
Q ss_pred CCCeeeccccccccCCCCcceeEEEceeeeCCCCcccCC---CchHHHHHHhhhHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 019707 146 MPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQE---GKGVYVMMSGLDLER-LVLAAGPLGIMQACLDVVLPYV 221 (337)
Q Consensus 146 ~~Gv~~~~~~~~~g~~~~~~~~v~f~~v~Vp~~~vl~~~---~~g~~~~~~~~~~~~-~~~~a~~~G~~~~al~~a~~~~ 221 (337)
.|||++.+.++.+|++.. ++++.||||+||.+++||.+ +.|+..+...+..+| +..++.++|+++.+++.+.+|+
T Consensus 277 ~pGV~ig~~~~~lG~~~~-~g~v~fdDV~VP~d~lLG~~~~~G~G~~~l~~~L~~gR~i~laA~a~G~A~~al~~Av~YA 355 (774)
T PRK13026 277 HPGVEIGRRHNPLGMAFM-NGTTRGKDVFIPLDWIIGGPDYAGRGWRMLVECLSAGRGISLPALGTASGHMATRTTGAYA 355 (774)
T ss_pred CCCeEeeccccccccCcc-cceEEEeeeEccHHHhcCCcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999989999999875 58999999999999999875 789999999999999 8999999999999999999999
Q ss_pred HhhhhcCCCCCcchHHHHHHHHHHH---HHHHHHHHHHHHHHHhcCCCCChhhhhHHHHHHHHHHHHHHHHHHHhhCCCc
Q 019707 222 RQREQFGRPLGEFQFIQGKTADMYT---ALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVTLQAIQCLGGNG 298 (337)
Q Consensus 222 ~~r~~~g~~~~~~~~vq~~la~~~~---~~~~~~a~~~~a~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~G~~~ 298 (337)
++|.+||+||.++|.||++|++|.. .++++|.+++.++ |.+......++++|+++++.+.++++.++|++||.|
T Consensus 356 ~~R~QFG~pIg~fQ~Vq~~LAdma~~~y~lEaaR~l~~~a~---D~G~~~~~~aA~AK~~atE~a~~va~~AmQIhGG~G 432 (774)
T PRK13026 356 YVRRQFGMPIGQFEGVQEALARIAGNTYLLEAARRLTTTGL---DLGVKPSVVTAIAKYHMTELARDVVNDAMDIHAGKG 432 (774)
T ss_pred HHHHhcCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhchhe
Confidence 9999999999999999999999999 6899999988765 444434578899999999999999999999999999
Q ss_pred ccCc--chHHHHHHhhccCcccCChHHHHHHHH
Q 019707 299 YVNE--YATGRLLRDAKLYEIGAGTSEIRRMII 329 (337)
Q Consensus 299 ~~~~--~~~~r~~rd~~~~~~~~g~~~~~~~~l 329 (337)
|+++ ++++|+|||++...+.+|++++++..|
T Consensus 433 y~~e~~~~ler~yRdari~~i~eGtnei~R~l~ 465 (774)
T PRK13026 433 IQLGPKNYLGHAYMAVPIAITVEGANILTRNLM 465 (774)
T ss_pred eeCCCCChHHHHHHHhhhhheeCcHHHHHHHHH
Confidence 9998 999999999999999999999999754
No 21
>cd01153 ACAD_fadE5 Putative acyl-CoA dehydrogenases similar to fadE5. Putative acyl-CoA dehydrogenase (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.
Probab=100.00 E-value=4e-57 Score=420.28 Aligned_cols=328 Identities=30% Similarity=0.460 Sum_probs=297.4
Q ss_pred CccccccCCCCCccCCCCCCCHHHHHHHHHHHHhccCchhhHhhhhhhhHHHHHHhcCCHHHHhhhchhhhcCcceeEEE
Q 019707 1 MGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALA 80 (337)
Q Consensus 1 l~~~Gl~~l~~p~~~GG~~~~~~~~~~~~e~la~~~~~~a~~~~~~~~~~~~~l~~~g~~~~~~~~l~~i~~g~~~~~~~ 80 (337)
|++.||+++.+|++|||.+.++.+...+.|+++++|+++++.+..|. +...+..+++++|+++|++++.+|+.+.+++
T Consensus 45 l~~~Gl~~~~vP~e~GG~g~~~~~~~~~~e~l~~~~~s~~~~~~~~~--~~~~l~~~g~~~~~~~~l~~i~~G~~~~~~a 122 (407)
T cd01153 45 FAEAGWMALGVPEEYGGQGLPITVYSALAEIFSRGDAPLMYASGTQG--AAATLLAHGTEAQREKWIPRLAEGEWTGTMC 122 (407)
T ss_pred HHHCCCCCCCCccccCCCCCCHHHHHHHHHHHHhhhHHHHHHHHHhH--HHHHHHHhCCHHHHHHHHHHHhCCCeeEEEE
Confidence 46899999999999999999999999999999999999988766553 4566788899999999999999999999999
Q ss_pred ecCCCCCCCcCCcEeEEEEe-CCeEEEeeeeEeeeCCCCC----CEEEEEEEeCCC-CCCCCeEEEEEeCCC-----CCe
Q 019707 81 MSEPNAGSDVVGMKCKADRV-DGGYIINGNKMWCTNGPVA----QTLVVYAKTDIK-AGSKGITAFIIEKGM-----PGF 149 (337)
Q Consensus 81 ~te~~~gs~~~~~~~~a~~~-~~g~~l~G~k~~~s~~~~a----d~~lv~a~~~~~-~~~~~~~~flvp~~~-----~Gv 149 (337)
+|||.+|||...+.|+++++ +|||+|||+|.|+|++.++ ++++|++++.++ ++.+++.+|+||++. |||
T Consensus 123 ~tEp~~gsd~~~~~t~a~~~~~ggy~l~G~K~~is~~~~a~~~~~~~~v~a~~~~~~~~~~~~~~flVp~~~~~~~~~gv 202 (407)
T cd01153 123 LTEPDAGSDLGALRTKAVYQADGSWRINGVKRFISAGEHDMSENIVHLVLARSEGAPPGVKGLSLFLVPKFLDDGERNGV 202 (407)
T ss_pred ecCCCCCCCcccceEEEEECCCCcEEEeeEEEEEeCCCcccccccEEEEEEeCCCCCCCCCceEEEEEeccCcCCCCCCe
Confidence 99999999999999999998 5689999999999999876 588888987542 344578999999997 899
Q ss_pred eeccccccccCCCCcceeEEEceeeeCCCCcccCCCchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC
Q 019707 150 STAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGR 229 (337)
Q Consensus 150 ~~~~~~~~~g~~~~~~~~v~f~~v~Vp~~~vl~~~~~g~~~~~~~~~~~~~~~~a~~~G~~~~al~~a~~~~~~r~~~g~ 229 (337)
++.+.|+.+||++++++++.|+||+|| +|+.++.|+......+...|+.++++++|+++++++.+++|+++|.++|.
T Consensus 203 ~i~~~~~~~G~r~t~s~~v~f~~v~Vp---~lg~~~~g~~~~~~~l~~~r~~~aa~~lG~a~~al~~a~~~a~~R~~fg~ 279 (407)
T cd01153 203 TVARIEEKMGLHGSPTCELVFDNAKGE---LIGEEGMGLAQMFAMMNGARLGVGTQGTGLAEAAYLNALAYAKERKQGGD 279 (407)
T ss_pred EeccchhccCCCCCCeEEEEEcCEEEe---eeCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeecCC
Confidence 999999999999999999999999999 88888889888888888999999999999999999999999999999999
Q ss_pred C--------CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC--------------hhhhhHHHHHHHHHHHHHH
Q 019707 230 P--------LGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVD--------------PKDCAGVILCAAERATQVT 287 (337)
Q Consensus 230 ~--------~~~~~~vq~~la~~~~~~~~~~a~~~~a~~~~~~~~~~--------------~~~~~~~k~~~~~~~~~~~ 287 (337)
| +.++|.+|++|+++.+++++++++++.+++.+++.... ...++++|.++++.+.+++
T Consensus 280 ~i~~~~~~~~~~~~~iq~~la~~~a~~~a~~~~~~~aa~~~d~~~~~~~~~~~~~~~~~~~~~~~~~aK~~~~~~a~~v~ 359 (407)
T cd01153 280 LIKAAPAVTIIHHPDVRRSLMTQKAYAEGSRALDLYTATVQDLAERKATEGEDRKALSALADLLTPVVKGFGSEAALEAV 359 (407)
T ss_pred cCccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8 78899999999999999999999999999988765311 2345689999999999999
Q ss_pred HHHHHhhCCCcccCcchHHHHHHhhccCcccCChHHHHHH-HHHHHH
Q 019707 288 LQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRM-IIGRAL 333 (337)
Q Consensus 288 ~~~~~~~G~~~~~~~~~~~r~~rd~~~~~~~~g~~~~~~~-~l~~~~ 333 (337)
+.+++++||.||.+++|++|+|||++++.+++|++++++. .+++.+
T Consensus 360 ~~a~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~Gt~~~~~~~~~~~~~ 406 (407)
T cd01153 360 SDAIQVHGGSGYTREYPIEQYYRDARITTIYEGTTGIQALDLIGRKI 406 (407)
T ss_pred HHHHHHhcCceecCCCcHHHHHHhhhhheeecChHHHHHHHHhhccc
Confidence 9999999999999999999999999999999999998877 777654
No 22
>COG1960 CaiA Acyl-CoA dehydrogenases [Lipid metabolism]
Probab=100.00 E-value=4.8e-57 Score=418.94 Aligned_cols=336 Identities=43% Similarity=0.706 Sum_probs=310.7
Q ss_pred CccccccCCCCCccCCCCCCCHHHHHHHHHHHHhccCchhhHhhhhhhh---HHHHHHhcCCHHHHhhhchhhhcCccee
Q 019707 1 MGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNL---CINQLVRHGSPAQKDKYLPKLISGEHVG 77 (337)
Q Consensus 1 l~~~Gl~~l~~p~~~GG~~~~~~~~~~~~e~la~~~~~~a~~~~~~~~~---~~~~l~~~g~~~~~~~~l~~i~~g~~~~ 77 (337)
|++.|++++.+|++|||.+.++.+...++|++++.+++.++.+..+... ....+..+|+++|+++|+|++.+|+.++
T Consensus 48 l~~~G~~~~~~p~e~GG~~~~~~~~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~q~~~~l~~~~~G~~~~ 127 (393)
T COG1960 48 LAEAGLLGLTIPEEYGGLGLSPLEQAAVLEELARADAGGALALGLTHGGLGALAPTILRFGTEEQKRRYLPRLASGELIG 127 (393)
T ss_pred HHhCCcccCCCChhhCCCCcchhHHHHHHHHHHhhCcchhhhHHHhccccccchHHHHHcCCHHHHHHhchhhhCCchhh
Confidence 4688999999999999999999999999999999999887766665422 2235667999999999999999999999
Q ss_pred EEEecCCCCCCCcCCcE-eEEEEeCCeEEEeeeeEeeeCCCCCCEEEEEEEeCCC-CCCCCeEEEEEeCC-CCCeeeccc
Q 019707 78 ALAMSEPNAGSDVVGMK-CKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIK-AGSKGITAFIIEKG-MPGFSTAQK 154 (337)
Q Consensus 78 ~~~~te~~~gs~~~~~~-~~a~~~~~g~~l~G~k~~~s~~~~ad~~lv~a~~~~~-~~~~~~~~flvp~~-~~Gv~~~~~ 154 (337)
|+++|||.+|||..... |++++++++|+|||+|+|+|++..+|+++|+++++++ ++.+++++|+||++ .||+++.+.
T Consensus 128 ~~~~tEp~~Gsd~~~~~~t~a~~~~g~~~lnG~K~~is~~~~ad~~~v~Ar~~~~~~~~~gis~flV~~~~~~Gv~~~~~ 207 (393)
T COG1960 128 AFALTEPGAGSDLASLRTTAAVRDDGDYVLNGQKIWISNAPVADWLLVLARTDPAPGKHKGISLFLVPKDLTPGVSVGPI 207 (393)
T ss_pred eeeccCCCCCcchhcCceeEEEecCCCEEEEeEEEEEcCCCCCCEEEEEEEcCCcccccCceEEEEEeCCCCCCeeeccc
Confidence 99999999999999987 7777767779999999999999999999999999876 46678999999999 599999877
Q ss_pred cccccCCCCcceeEEEceeeeCCCCcccCCCchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcc
Q 019707 155 LDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEF 234 (337)
Q Consensus 155 ~~~~g~~~~~~~~v~f~~v~Vp~~~vl~~~~~g~~~~~~~~~~~~~~~~a~~~G~~~~al~~a~~~~~~r~~~g~~~~~~ 234 (337)
|+..|+++++++++.|+||+||.++++|..+.|+..+...+...|+..++.++|+++.+++.+++|+++|.++|.|+.++
T Consensus 208 ~~~~G~r~~~~~~v~f~~v~vp~~~lig~~~~g~~~~~~~l~~~r~~~aa~~~G~a~~al~~~~~ya~~R~~fg~~i~~~ 287 (393)
T COG1960 208 LKKMGLRGSATGEVFFDDVRVPAENLLGEEGDGFKIAMETLNVERLGIAAQALGIAEAALEEAVAYARERKQFGRPIADF 287 (393)
T ss_pred cCcCCcCCCCeeEEEECCeeccHHHcCCcCCchHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCchhhc
Confidence 76559999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChhhhhHHHHHHHHHHHHHHHHHHHhhCCCcccCcchHHHHHHhhcc
Q 019707 235 QFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKL 314 (337)
Q Consensus 235 ~~vq~~la~~~~~~~~~~a~~~~a~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~r~~rd~~~ 314 (337)
|.+|++|+++.+.+++++++++++++..+...+....++++|.++++.+.++++.++|++||.||++++|++|+|||++.
T Consensus 288 ~~vq~~la~~~~~~~a~r~~~~~aa~~~~~~~~~~~~~~~aK~~a~~~~~~~~~~a~q~~Gg~g~~~e~~i~r~~rda~~ 367 (393)
T COG1960 288 QLVQFKLADMAAELEAARLLVLRAAELADAGDDAGAEAAMAKLFATEAALEVADEAVQVHGGYGYTEEYPVERYYRDARI 367 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCchHHHHHHHhHh
Confidence 99999999999999999999999999888775445789999999999999999999999999999999999999999999
Q ss_pred CcccCChHHHHHHHHHHHHHhc
Q 019707 315 YEIGAGTSEIRRMIIGRALLKQ 336 (337)
Q Consensus 315 ~~~~~g~~~~~~~~l~~~~~~~ 336 (337)
..+++|++++++..+++.+++.
T Consensus 368 ~~i~~Gt~~i~~~~i~~~~~~~ 389 (393)
T COG1960 368 LRIYEGTSEIQRLIIARRLLGL 389 (393)
T ss_pred heeccCHHHHHHHHHHHHHhhh
Confidence 9999999999999999999875
No 23
>cd01152 ACAD_fadE6_17_26 Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26. Putative acyl-CoA dehydrogenases (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.
Probab=100.00 E-value=1.6e-56 Score=413.21 Aligned_cols=328 Identities=25% Similarity=0.386 Sum_probs=294.9
Q ss_pred CccccccCCCCCccCCCCCCCHHHHHHHHHHHHhccCchhhHhhhhhhhHHHHHHhcCCHHHHhhhchhhhcCcceeEEE
Q 019707 1 MGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALA 80 (337)
Q Consensus 1 l~~~Gl~~l~~p~~~GG~~~~~~~~~~~~e~la~~~~~~a~~~~~~~~~~~~~l~~~g~~~~~~~~l~~i~~g~~~~~~~ 80 (337)
|++.||+++.+|++|||.+.++.+.+.++|++++.++++++.+..+. .+...+..+++++|+++||+++.+|+.+.+++
T Consensus 44 l~~~Gl~~l~vP~~~GG~g~~~~~~~~~~e~l~~~~~~~~~~~~~~~-~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a 122 (380)
T cd01152 44 LAAAGWAAPGWPKEYGGRGASLMEQLIFREEMAAAGAPVPFNQIGID-LAGPTILAYGTDEQKRRFLPPILSGEEIWCQG 122 (380)
T ss_pred HHhCCCCccCCChhhCCCCCCHHHHHHHHHHHHhcCCCcccchhhHH-HHHHHHHHhCCHHHHHHHhHHHhCCchhheee
Confidence 56899999999999999999999999999999999999988623333 45567889999999999999999999999999
Q ss_pred ecCCCCCCCcCCcEeEEEEeCCeEEEeeeeEeeeCCCCCCEEEEEEEeCCC-CCCCCeEEEEEeCCCCCeeecccccccc
Q 019707 81 MSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIK-AGSKGITAFIIEKGMPGFSTAQKLDKLG 159 (337)
Q Consensus 81 ~te~~~gs~~~~~~~~a~~~~~g~~l~G~k~~~s~~~~ad~~lv~a~~~~~-~~~~~~~~flvp~~~~Gv~~~~~~~~~g 159 (337)
+|||..|+|...+.++++++++||+|||+|.|+|++..+|+++|+++++++ ++.+++++|+||++.|||++.+.|+.+|
T Consensus 123 ~tE~~~gsd~~~~~t~a~~~~~g~~L~G~K~~it~~~~ad~~lv~a~~~~~~~~~~~~~~~lVp~~~~Gv~~~~~~~~~g 202 (380)
T cd01152 123 FSEPGAGSDLAGLRTRAVRDGDDWVVNGQKIWTSGAHYADWAWLLVRTDPEAPKHRGISILLVDMDSPGVTVRPIRSING 202 (380)
T ss_pred cCCCCCCcchhhCeeeEEEcCCeEEEecEEEEEcCccccCEEEEEEEeCCCccCcCCeEEEEEeCCCCceEeeehhhccC
Confidence 999999999999999999999999999999999999999999999997643 2345789999999999999999898877
Q ss_pred CCCCcceeEEEceeeeCCCCcccCCCchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcchHHHH
Q 019707 160 MRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQG 239 (337)
Q Consensus 160 ~~~~~~~~v~f~~v~Vp~~~vl~~~~~g~~~~~~~~~~~~~~~~a~~~G~~~~al~~a~~~~~~r~~~g~~~~~~~~vq~ 239 (337)
+++++++.|+||+||.+++|+.++.|+..+...+...|+..++.+.|+ ++.+++|+++|.++|+|+.++|.+|+
T Consensus 203 --~~~~~~l~f~~v~Vp~~~~lg~~~~g~~~~~~~l~~~r~~~~~~~~~~----~~~a~~~a~~r~~~g~~l~~~~~vq~ 276 (380)
T cd01152 203 --GEFFNEVFLDDVRVPDANRVGEVNDGWKVAMTTLNFERVSIGGSAATF----FELLLARLLLLTRDGRPLIDDPLVRQ 276 (380)
T ss_pred --CCCcceEEecCcCcchhcccCCCCchHHHHHHHHHhcccccchhhhHH----HHHHHHHHHHHHhcCCCcccCHHHHH
Confidence 678899999999999999999998888877777777777766555555 55667788888899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCChhhhhHHHHHHHHHHHHHHHHHHHhhCCCcccCc--------chHHHHHHh
Q 019707 240 KTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNE--------YATGRLLRD 311 (337)
Q Consensus 240 ~la~~~~~~~~~~a~~~~a~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~G~~~~~~~--------~~~~r~~rd 311 (337)
+|+++..++++++++++.+++.++++......++++|.++++.+.++++.+++++||.||.++ ++++|++||
T Consensus 277 ~la~~~~~l~~a~~l~~~aa~~~~~~~~~~~~~a~aK~~~~~~a~~v~~~a~~i~Gg~g~~~~~~~~~~~~~~~~r~~rd 356 (380)
T cd01152 277 RLARLEAEAEALRLLVFRLASALAAGKPPGAEASIAKLFGSELAQELAELALELLGTAALLRDPAPGAELAGRWEADYLR 356 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHhcCccccccccccccccccHHHHHHHh
Confidence 999999999999999999999998765555678899999999999999999999999999988 799999999
Q ss_pred hccCcccCChHHHHHHHHHHHHHh
Q 019707 312 AKLYEIGAGTSEIRRMIIGRALLK 335 (337)
Q Consensus 312 ~~~~~~~~g~~~~~~~~l~~~~~~ 335 (337)
++.+.+++|++++++..|++.+++
T Consensus 357 ~~~~~~~~g~~~~~~~~i~~~~~~ 380 (380)
T cd01152 357 SRATTIYGGTSEIQRNIIAERLLG 380 (380)
T ss_pred CccceeeccHHHHHHHHHHHHhcC
Confidence 999999999999999999998875
No 24
>TIGR03204 pimC_large pimeloyl-CoA dehydrogenase, large subunit. Members of this protein family are the PimC proteins of species such as Rhodopseudomonas palustris and Bradyrhizobium japonicum. The pimFABCDE operon encodes proteins for the metabolism of straight chain dicarboxylates of seven to fourteen carbons. Especially relevant is pimeloyl-CoA, basis of the gene symbol, as it is a catabolite of benzoyl-CoA degradation, which occurs in Rhodopseudomonas palustris.
Probab=100.00 E-value=7e-56 Score=409.93 Aligned_cols=329 Identities=25% Similarity=0.336 Sum_probs=291.8
Q ss_pred CccccccCCCCCccCCCCCCCHHHHHHHHHHHHhccCchhhHhhhhhhhHHHHHHhcCCHHHHhhhchhhhcCcceeEEE
Q 019707 1 MGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALA 80 (337)
Q Consensus 1 l~~~Gl~~l~~p~~~GG~~~~~~~~~~~~e~la~~~~~~a~~~~~~~~~~~~~l~~~g~~~~~~~~l~~i~~g~~~~~~~ 80 (337)
|.+.||+++.+|++|||.|+++.+.+.++|++++.+.+.++...++ ++...+..+++++||++|||++.+|+.+.+++
T Consensus 49 l~e~G~~gl~vPe~~GG~G~~~~~~~~v~eelg~~~~~~~~~~~~~--~~~~~l~~~g~~~q~~~~L~~i~~G~~~~~~a 126 (395)
T TIGR03204 49 LNKKGWGVSHWPKQYGGTGWTSVQHYIFNEELQSAPAPQPLAFGVS--MVGPVIYTFGNEEQKKRFLPRIANVDDWWCQG 126 (395)
T ss_pred HHhCCCCCCCCCcccCCCCCCHHHHHHHHHHHHhcCCCccchhHhH--hhHHHHHHhCCHHHHHHHHHHHhCCchheEeE
Confidence 4689999999999999999999999999999999998877654333 34457888999999999999999999999999
Q ss_pred ecCCCCCCCcCCcEeEEEEeCCeEEEeeeeEeeeCCCCCCEEEEEEEeCCCC-CCCCeEEEEEeCCCCCeeecccccccc
Q 019707 81 MSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKA-GSKGITAFIIEKGMPGFSTAQKLDKLG 159 (337)
Q Consensus 81 ~te~~~gs~~~~~~~~a~~~~~g~~l~G~k~~~s~~~~ad~~lv~a~~~~~~-~~~~~~~flvp~~~~Gv~~~~~~~~~g 159 (337)
+|||+.|||.....|++++++++|+|||+|.|+|++..||+++|.+++++++ +..++++|+||.+.|||++.+.....|
T Consensus 127 ~tEp~~gsd~~~~~t~a~~~g~~~~LnG~K~~vt~a~~Ad~~lv~a~~~~~~~~~~g~~~flV~~~~~Gv~~~~~~~~~~ 206 (395)
T TIGR03204 127 FSEPGSGSDLASLKTKAEKKGDKWIINGQKTWTTLAQHADWIFCLCRTDPTAKKQMGISFILVDMKSKGITVRPIQTIDG 206 (395)
T ss_pred ecCCCCCCChhhceEEEEEcCCEEEEeeEEEeecCCccCCeEEEEEEeCCCCCCCCCeEEEEEeCCCCCeEecChhhccC
Confidence 9999999999999999999999999999999999999999999999975432 346789999999999999965444433
Q ss_pred CCCCcceeEEEceeeeCCCCcccCCCchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcchHHHH
Q 019707 160 MRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQG 239 (337)
Q Consensus 160 ~~~~~~~~v~f~~v~Vp~~~vl~~~~~g~~~~~~~~~~~~~~~~a~~~G~~~~al~~a~~~~~~r~~~g~~~~~~~~vq~ 239 (337)
+++++++.|+||+||++++++..+.|+......+...++..++ +|+++++++.+++|+++|.+||+||.++|.+|+
T Consensus 207 --~~~~~~v~f~~v~Vp~~~~lg~~~~g~~~~~~~l~~~r~g~aa--~g~a~~~l~~a~~ya~~R~~fg~~i~~~q~vq~ 282 (395)
T TIGR03204 207 --GVEVNEVFFDDVEVPYENLVGEENKGWDYAKFLLGNERTGIAR--VGVSKERIRRIKDLAAKVESGGKPVIEDAKFRE 282 (395)
T ss_pred --CCceeEEEEcceEEcHHHcCCCCCchHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhcCCccccCHHHHH
Confidence 6789999999999999999999888998888888888888775 899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc-CCC-CChhhhhHHHHHHHHHHHHHHHHHHHh----------hCCCcccCc----c
Q 019707 240 KTADMYTALQSSRSYVYSVARDCD-NGK-VDPKDCAGVILCAAERATQVTLQAIQC----------LGGNGYVNE----Y 303 (337)
Q Consensus 240 ~la~~~~~~~~~~a~~~~a~~~~~-~~~-~~~~~~~~~k~~~~~~~~~~~~~~~~~----------~G~~~~~~~----~ 303 (337)
+|++|...++++|+++++++.... .+. .....++++|.++++.+.++++.++|+ +||.||.++ +
T Consensus 283 ~la~~~~~~~aar~l~~~aa~~~~~~~~~~~~~~aa~aK~~~~~~~~~~~~~a~q~~g~~~~~~~~~Gg~G~~~~~~~~~ 362 (395)
T TIGR03204 283 KLAAVEIELKALELTQLRVVADEGKHGKGKPNPASSVLKIKGSEIQQATTELLMEVIGPFAAPYDVHGDDGSNEAMDWTA 362 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccccccccccchhhh
Confidence 999999999999999999975432 221 124579999999999999999999985 788899866 4
Q ss_pred hHHHHHHhhccCcccCChHHHHHHHHHHHHHh
Q 019707 304 ATGRLLRDAKLYEIGAGTSEIRRMIIGRALLK 335 (337)
Q Consensus 304 ~~~r~~rd~~~~~~~~g~~~~~~~~l~~~~~~ 335 (337)
|++|+|||.+.+.+++|++++++..|+|.+++
T Consensus 363 ~~~~~~r~~~~~~i~~Gt~ei~~~~ia~~~l~ 394 (395)
T TIGR03204 363 QIAPSYFNNRKVSIYGGSNEIQRNIIAKAVLG 394 (395)
T ss_pred HHHHHHHhccccceeccHHHHHHHHHHHHHcC
Confidence 79999999999999999999999999998864
No 25
>PTZ00456 acyl-CoA dehydrogenase; Provisional
Probab=100.00 E-value=2.8e-55 Score=420.89 Aligned_cols=330 Identities=26% Similarity=0.396 Sum_probs=294.9
Q ss_pred CccccccCCCCCccCCCCCCCHHHHHHHHHHHHhccCchhhHhhhhhhhHHHHHHhcCCHHHHhhhchhhhcCcceeEEE
Q 019707 1 MGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALA 80 (337)
Q Consensus 1 l~~~Gl~~l~~p~~~GG~~~~~~~~~~~~e~la~~~~~~a~~~~~~~~~~~~~l~~~g~~~~~~~~l~~i~~g~~~~~~~ 80 (337)
++|.||+++.+|++|||.|++......+.|.++..+++++.....+. .+...|..+|+++||++|||++.+|+++++++
T Consensus 108 l~e~G~~~l~~Pee~GG~Gl~~~~~~~~~E~~~~a~~~~~~~~~l~~-ga~~~L~~~Gs~eqk~~~Lp~l~sGe~~~t~a 186 (622)
T PTZ00456 108 LKAGGWTGISEPEEYGGQALPLSVGFITRELMATANWGFSMYPGLSI-GAANTLMAWGSEEQKEQYLTKLVSGEWSGTMC 186 (622)
T ss_pred HHHcCCCCCCCCcccCCCCcCHHHHHHHHHHHHHhchHHHHHHHHHH-HHHHHHHHhCCHHHHHHHHHHHhcCChhhhhh
Confidence 46899999999999999999988666666667778887665444443 55678999999999999999999999999999
Q ss_pred ecCCCCCCCcCCcEeEEEEeCCe-EEEeeeeEeeeCCCCC----CEEEEEEEeCCC-CCCCCeEEEEEeCCC--------
Q 019707 81 MSEPNAGSDVVGMKCKADRVDGG-YIINGNKMWCTNGPVA----QTLVVYAKTDIK-AGSKGITAFIIEKGM-------- 146 (337)
Q Consensus 81 ~te~~~gs~~~~~~~~a~~~~~g-~~l~G~k~~~s~~~~a----d~~lv~a~~~~~-~~~~~~~~flvp~~~-------- 146 (337)
+|||+.|||....+|+|++++|| |+|||+|.|+|++.++ ++++|+|+++++ ++++++++|+||++.
T Consensus 187 lTEp~aGSD~~~l~T~A~~~gdG~y~L~G~K~fIt~g~~~~~~n~~~lVlAr~~~~~~g~~GiSlFlVp~~~~~~~G~~~ 266 (622)
T PTZ00456 187 LTEPQCGTDLGQVKTKAEPSADGSYKITGTKIFISAGDHDLTENIVHIVLARLPNSLPTTKGLSLFLVPRHVVKPDGSLE 266 (622)
T ss_pred ccCCccCCCcccCeeEEEECCCCcEEEeeEEEEecCCchhhccCcEEEEEEEecCCCCCCCceEEEEEeCCCCCcCCCcc
Confidence 99999999999999999999875 9999999999998763 688999998753 467889999999865
Q ss_pred --CCeeeccccccccCCCCcceeEEEceeeeCCCCcccCCCchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019707 147 --PGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQR 224 (337)
Q Consensus 147 --~Gv~~~~~~~~~g~~~~~~~~v~f~~v~Vp~~~vl~~~~~g~~~~~~~~~~~~~~~~a~~~G~~~~al~~a~~~~~~r 224 (337)
+||++.+.++++|+++++++++.|+|+ .+++||.++.|+..+...+...|+.+++.++|+++++++.+++|+++|
T Consensus 267 ~~~gv~~~~~~~kmG~~gs~t~~l~fd~~---~~~llG~~~~Gl~~~~~~mn~aRl~vaa~~lG~a~~Al~~Al~YAk~R 343 (622)
T PTZ00456 267 TAKNVKCIGLEKKMGIKGSSTCQLSFENS---VGYLIGEPNAGMKQMFTFMNTARVGTALEGVCHAELAFQNALRYARER 343 (622)
T ss_pred CCCCeeecCcccccCCCCCceEEEEeeCh---hHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 478887888999999999999999994 689999999999999999999999999999999999999999999999
Q ss_pred hhc------------CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC---C----------ChhhhhHHHHHH
Q 019707 225 EQF------------GRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGK---V----------DPKDCAGVILCA 279 (337)
Q Consensus 225 ~~~------------g~~~~~~~~vq~~la~~~~~~~~~~a~~~~a~~~~~~~~---~----------~~~~~~~~k~~~ 279 (337)
.++ +.||+++|.||++|+++.+.++++|++++.++..+|... + .....+++|.++
T Consensus 344 ~Qfr~~~~~~~~~~~~~~I~~~~~Vr~~L~~~~a~~eaaral~~~aA~~~D~~~~~~~~~~~~~~~~~~~~~t~iaK~~~ 423 (622)
T PTZ00456 344 RSMRALSGTKEPEKPADRIICHANVRQNILFAKAVAEGGRALLLDVGRLLDIHAAAKDAATREALDHEIGFYTPIAKGCL 423 (622)
T ss_pred ccCccccccccccCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhHhhhhhhhhHHHHHHHHHH
Confidence 984 678999999999999999999999999999999888642 1 123577999999
Q ss_pred HHHHHHHHHHHHHhhCCCcccCcchHHHHHHhhccCcccCChHHHHH-HHHHHHHH
Q 019707 280 AERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRR-MIIGRALL 334 (337)
Q Consensus 280 ~~~~~~~~~~~~~~~G~~~~~~~~~~~r~~rd~~~~~~~~g~~~~~~-~~l~~~~~ 334 (337)
++.+.++++.++|++||.||++++|++|+|||++...+++|++++++ ..|+|.++
T Consensus 424 te~a~~va~~aiQv~GG~Gy~~e~~ler~~RDari~~i~eGt~~iq~~dli~rkll 479 (622)
T PTZ00456 424 TEWGVEAASRCLQVWGGHGYIKGNGMEQILRDARIGTLYEGTTGIQALDFIGRKVL 479 (622)
T ss_pred HHHHHHHHHHHHHhccCCCccCCchHHHHHHHhhcccccCChHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999997 59999987
No 26
>KOG0137 consensus Very-long-chain acyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=100.00 E-value=5.1e-57 Score=406.72 Aligned_cols=335 Identities=35% Similarity=0.585 Sum_probs=318.7
Q ss_pred CccccccCCCCCccCCCCCCCHHHHHHHHHHHHhccCchhhHhhhhhhhHHHHHHhcCCHHHHhhhchhhhcCcceeEEE
Q 019707 1 MGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALA 80 (337)
Q Consensus 1 l~~~Gl~~l~~p~~~GG~~~~~~~~~~~~e~la~~~~~~a~~~~~~~~~~~~~l~~~g~~~~~~~~l~~i~~g~~~~~~~ 80 (337)
|+++|+|++.+|++|+|.|.++.+.+++.|.++.+|.+++..+..|.......|..+|+++||++|||++++|+.+++++
T Consensus 118 l~elG~fgl~v~~e~~G~G~~ntq~arl~e~~~~~D~~v~~tl~ahq~i~~k~l~lyGt~~Qk~kYL~~LaSg~~~~A~a 197 (634)
T KOG0137|consen 118 LRELGLFGLQVPSEFDGLGFCNTQYARLFEIVSVADLNVGVTLGAHQSIGLKGLLLYGTDEQKQKYLPKLASGKLIAAFA 197 (634)
T ss_pred HHHhCceeeccCcccCccccchHHHHHHhhccccccccceeeeccchhhheeeeeecCCHHHHHHHHHhhhcCCccceEE
Confidence 57899999999999999999999999999999999999999988888788889999999999999999999999999999
Q ss_pred ecCCCCCCCcCCcEeEEEEeCCe--EEEeeeeEeeeCCCCCCEEEEEEEeCCC----CCCCCeEEEEEeCCCCCeeeccc
Q 019707 81 MSEPNAGSDVVGMKCKADRVDGG--YIINGNKMWCTNGPVAQTLVVYAKTDIK----AGSKGITAFIIEKGMPGFSTAQK 154 (337)
Q Consensus 81 ~te~~~gs~~~~~~~~a~~~~~g--~~l~G~k~~~s~~~~ad~~lv~a~~~~~----~~~~~~~~flvp~~~~Gv~~~~~ 154 (337)
++||..|||.....|+++..+|| |+|||.|.|+|++..||+++|+|+++.+ ...+++++|+|+++..|++-.++
T Consensus 198 ltE~s~Gsdaas~~~~a~~s~dg~~y~LNG~Kiwisn~g~Adif~VfAqt~~~~~~g~~k~k~T~Flver~~~Gvt~G~~ 277 (634)
T KOG0137|consen 198 LTEPSSGSDAASGRTTATLSPDGKHYVLNGSKIWISNGGLADIFTVFAQTEVDPADGEVKRKITAFLVERDFGGVTNGPP 277 (634)
T ss_pred EecCCCCcccccceeeeeecCCCCeEEEcCeeEEEecCccceeeeeeeccccCCCCccccCceEEEEEeccccCccCCCc
Confidence 99999999999999999876654 9999999999999999999999999744 23688999999999999999999
Q ss_pred cccccCCCCcceeEEEceeeeCCCCcccCCCchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcc
Q 019707 155 LDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEF 234 (337)
Q Consensus 155 ~~~~g~~~~~~~~v~f~~v~Vp~~~vl~~~~~g~~~~~~~~~~~~~~~~a~~~G~~~~al~~a~~~~~~r~~~g~~~~~~ 234 (337)
..++|.+++++++|.|++|.||.+++||.+++|+.....++.-+|+..++..+|.++++++++.+|+..|.|+|.++.++
T Consensus 278 e~k~GiKgsnt~~v~f~~~ki~~envlG~~G~G~kva~nilnsgR~~~aaa~~G~mkr~I~~~~d~~~~rtQ~g~~L~~~ 357 (634)
T KOG0137|consen 278 EKKMGIKGSNTAEVHFEGVKIPIENVLGKPGDGFKVAMNILNSGRFGMAAALLGLMKRIIEEAADYATNRTQFGKKLHDF 357 (634)
T ss_pred hhhhcccccceeeeeeccccccHHHhcCCCCcchHHHHHHHccCCcchhHHHHHHHHHHHHHHHHHhhcceecCcchhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCChhhhhHHHHHHHHHHHHHHHHHHHhhCCCcccCcchHHHHHHhh
Q 019707 235 QFIQGKTADMYTALQSSRSYVYSVARDCDNG--KVDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDA 312 (337)
Q Consensus 235 ~~vq~~la~~~~~~~~~~a~~~~a~~~~~~~--~~~~~~~~~~k~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~r~~rd~ 312 (337)
..+|.++++|...+++.++++|..+..+|+. .+...++++.|+++.+.++.++.++++++||.||+.+.|++|.+||+
T Consensus 358 ~l~q~k~~~m~~~~Ya~ESm~yl~sg~~D~~~a~d~~lEaai~Ki~a~e~a~~v~se~iqi~Gg~g~m~d~g~Er~LRD~ 437 (634)
T KOG0137|consen 358 GLIQEKVAEMASKVYATESMLYLLSGLMDEVGAKDVQLEAAILKIFASEQAWAVVSEAIQIVGGMGYMRDTGLERLLRDA 437 (634)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhcccccccceeeeehHHHHHHHhhhHHHHHHHhhhheeccccccccCchHHHhhhh
Confidence 9999999999999999999999999999984 35678999999999999999999999999999999999999999999
Q ss_pred ccCcccCChHHHHHHHHHHHHHh
Q 019707 313 KLYEIGAGTSEIRRMIIGRALLK 335 (337)
Q Consensus 313 ~~~~~~~g~~~~~~~~l~~~~~~ 335 (337)
+.+.|++|++++++..|+...++
T Consensus 438 ri~~I~egtndvLrlfiAltg~q 460 (634)
T KOG0137|consen 438 RILRIFEGTNDVLRLFIALTGLQ 460 (634)
T ss_pred heeeeecCchhHHHHHHHHHHHH
Confidence 99999999999999999876554
No 27
>PLN02876 acyl-CoA dehydrogenase
Probab=100.00 E-value=8.6e-55 Score=434.65 Aligned_cols=335 Identities=24% Similarity=0.348 Sum_probs=302.2
Q ss_pred ccccccCCCCCcc------------------------CCCCCCCHHHHHHHHHHHHhccCch-hhHhhhhhhhHHHHHHh
Q 019707 2 GNFNLHGITAPQE------------------------YGGLGLGYLYHCIAMEEISRASGSV-GLSYGAHSNLCINQLVR 56 (337)
Q Consensus 2 ~~~Gl~~l~~p~~------------------------~GG~~~~~~~~~~~~e~la~~~~~~-a~~~~~~~~~~~~~l~~ 56 (337)
++.||+++.+|++ |||.|++..+...++|++++.+.+. .+....+.......|..
T Consensus 452 ~~~G~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~G~~~~~~~~~~Eelg~~~~~~~~~~~~~~~~~~~~~l~~ 531 (822)
T PLN02876 452 KKEGLWNLWIPLDSAARARKLLFEDNKHMVSGDSADQLLGAGLSNLEYGYLCEIMGRSVWAPQVFNCGAPDTGNMEVLLR 531 (822)
T ss_pred HHcCcccCCCCchhhhhhhhcccccccccccccccccCCCCCCCHHHHHHHHHHHhccchHHHHhcccCcccccHHHHHH
Confidence 3799999999996 9999999999999999999986442 22222222234457889
Q ss_pred cCCHHHHhhhchhhhcCcceeEEEecCCC-CCCCcCCcEeEEEEeCCeEEEeeeeEeeeCC--CCCCEEEEEEEeCCC-C
Q 019707 57 HGSPAQKDKYLPKLISGEHVGALAMSEPN-AGSDVVGMKCKADRVDGGYIINGNKMWCTNG--PVAQTLVVYAKTDIK-A 132 (337)
Q Consensus 57 ~g~~~~~~~~l~~i~~g~~~~~~~~te~~-~gs~~~~~~~~a~~~~~g~~l~G~k~~~s~~--~~ad~~lv~a~~~~~-~ 132 (337)
+|+++||++||+++.+|+.++++++|||+ .|||..+..|++++++|||+|||+|+|+|++ ..+|+++|+++++++ +
T Consensus 532 ~gt~eqk~~~L~~l~~G~~~~~~a~tEp~~~gsd~~~~~t~a~~~g~g~vLnG~K~~vtga~~~~ad~~lv~ar~~~~~~ 611 (822)
T PLN02876 532 YGNKEQQLEWLIPLLEGKIRSGFAMTEPQVASSDATNIECSIRRQGDSYVINGTKWWTSGAMDPRCRVLIVMGKTDFNAP 611 (822)
T ss_pred hCCHHHHHHHHHHHhCCCceeEEEecCCCccCcccccceEEEEEcCCEEEEEeEEEEecCCCCCCCCEEEEEEecCCCCC
Confidence 99999999999999999999999999997 6799999999999999999999999999998 579999999997543 2
Q ss_pred CCCCeEEEEEeCCCCCeeeccccccccCCCC--cceeEEEceeeeCCCCcccCCCchHHHHHHhhhHHHHHHHHHHHHHH
Q 019707 133 GSKGITAFIIEKGMPGFSTAQKLDKLGMRGS--DTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIM 210 (337)
Q Consensus 133 ~~~~~~~flvp~~~~Gv~~~~~~~~~g~~~~--~~~~v~f~~v~Vp~~~vl~~~~~g~~~~~~~~~~~~~~~~a~~~G~~ 210 (337)
+.++.++|+||.+.|||++.++|+.+||+++ .+++|.|+||+||++++|+.++.|+..+...+..+|+..++.++|++
T Consensus 612 ~~~~~s~flV~~~~pGv~i~~~~~~~G~r~~~~~~~~v~fd~V~Vp~~~~lg~~g~g~~~~~~~l~~~r~~~aa~~vG~a 691 (822)
T PLN02876 612 KHKQQSMILVDIQTPGVQIKRPLLVFGFDDAPHGHAEISFENVRVPAKNILLGEGRGFEIAQGRLGPGRLHHCMRLIGAA 691 (822)
T ss_pred CCCcceEEEEeCCCCCceeecccceeccCCCCCCeeEEEEcceeechhheecCCCchHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3456899999999999999889999999984 58899999999999999998888888888888899999999999999
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CChhhhhHHHHHHHHHHHHHHH
Q 019707 211 QACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGK--VDPKDCAGVILCAAERATQVTL 288 (337)
Q Consensus 211 ~~al~~a~~~~~~r~~~g~~~~~~~~vq~~la~~~~~~~~~~a~~~~a~~~~~~~~--~~~~~~~~~k~~~~~~~~~~~~ 288 (337)
+++++.+++|+++|.+||+|+.++|.+|++|+++.+.++++|++++.+++.++... .....++++|.++++.+.++++
T Consensus 692 ~~ale~a~~ya~~R~~fg~~i~~~q~vq~~la~~~~~leaar~l~~~aa~~~d~~~~~~~~~~~a~aK~~a~e~a~~va~ 771 (822)
T PLN02876 692 ERGMQLMVQRALSRKAFGKLIAQHGSFLSDLAKCRVELEQTRLLVLEAADQLDRLGNKKARGIIAMAKVAAPNMALKVLD 771 (822)
T ss_pred HHHHHHHHHHHHhhhhcCCchhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999888732 3456789999999999999999
Q ss_pred HHHHhhCCCcccCcchHHHHHHhhccCcccCChHHHHHHHHHHHHHhc
Q 019707 289 QAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRALLKQ 336 (337)
Q Consensus 289 ~~~~~~G~~~~~~~~~~~r~~rd~~~~~~~~g~~~~~~~~l~~~~~~~ 336 (337)
.++|++||.||++++|++|+|||++...+++|++++++..|++.+++.
T Consensus 772 ~a~qv~Gg~G~~~e~~l~r~~Rdar~~~i~~Gt~e~~~~~ia~~~~~~ 819 (822)
T PLN02876 772 MAMQVHGAAGVSSDTVLAHLWATARTLRIADGPDEVHLGTIAKLELQR 819 (822)
T ss_pred HHHHhcCCCccCCcchHHHHHHhhhhcccccChHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999874
No 28
>PLN02636 acyl-coenzyme A oxidase
Probab=100.00 E-value=1.1e-54 Score=420.46 Aligned_cols=329 Identities=23% Similarity=0.333 Sum_probs=298.4
Q ss_pred ccccccCCCCCccCCCCCCCHHHHHHHHHHHHhccCchhhHhhhhhhhHHHHHHhcCCHHHHhhhchhhhcCcceeEEEe
Q 019707 2 GNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAM 81 (337)
Q Consensus 2 ~~~Gl~~l~~p~~~GG~~~~~~~~~~~~e~la~~~~~~a~~~~~~~~~~~~~l~~~g~~~~~~~~l~~i~~g~~~~~~~~ 81 (337)
++.|++++.+|++ ++.+...++|++++.|++++..+..|..++...|..+|+++|+++|||++.+|+.++|+++
T Consensus 106 ~~~g~~~~~~~~~------~~~~~~~~~e~l~~~d~s~~~~~~vh~~l~~~~I~~~GTeeQk~~~L~~~~~ge~ig~fA~ 179 (686)
T PLN02636 106 REAGIRPMKYLVE------DPAKYFAITEAVGSVDMSLGIKLGVQYSLWGGSVINLGTKKHRDKYFDGIDNLDYPGCFAM 179 (686)
T ss_pred HhcCccccccccC------CHHHHHHHHHHHHhhchhhHHHHHhhhhhHHHHHHHhCCHHHHHHHHHHHhCCChhhhhhc
Confidence 5788999999975 8899999999999999998887888877888899999999999999999999999999999
Q ss_pred cCCCCCCCcCCcEeEEEEe--CCeEEEe-----eeeEeeeCCCC-CCEEEEEEEeCCC------CCCCCeEEEEEeCC--
Q 019707 82 SEPNAGSDVVGMKCKADRV--DGGYIIN-----GNKMWCTNGPV-AQTLVVYAKTDIK------AGSKGITAFIIEKG-- 145 (337)
Q Consensus 82 te~~~gs~~~~~~~~a~~~--~~g~~l~-----G~k~~~s~~~~-ad~~lv~a~~~~~------~~~~~~~~flvp~~-- 145 (337)
|||++|||+...+|+|+++ +|+|+|| |.|+|++|+.. ||+++|+|++..+ +.+.++++|+||.+
T Consensus 180 TEpghGSdv~~leTtA~~d~~~defVLntP~~~g~K~wI~na~~~ad~~vV~Arl~~~~~~~~~~~~~Gi~~FlVp~r~~ 259 (686)
T PLN02636 180 TELHHGSNVQGLQTTATFDPLTDEFVINTPNDGAIKWWIGNAAVHGKFATVFARLKLPTHDSKGVSDMGVHAFIVPIRDM 259 (686)
T ss_pred cCCCcccCcccCeeEEEEcCCCCeEEECCCCCCeEEEeecCCcccCCEEEEEEEecCCCCCccCCCCCCeeEEEEecCcc
Confidence 9999999999999999998 6889999 99999999975 9999999998632 12568999999987
Q ss_pred -----CCCeeeccccccccCCCCcceeEEEceeeeCCCCcccC----------------CCchHHHHHHhhhHHHHHHHH
Q 019707 146 -----MPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQ----------------EGKGVYVMMSGLDLERLVLAA 204 (337)
Q Consensus 146 -----~~Gv~~~~~~~~~g~~~~~~~~v~f~~v~Vp~~~vl~~----------------~~~g~~~~~~~~~~~~~~~~a 204 (337)
.|||++.+..+++|+++.+++.+.||||+||.+++|+. .+.|+......+..+|+..++
T Consensus 260 ~~~~~~PGV~v~~~~~K~G~~g~dng~l~FdnVrVP~~nlLg~~g~v~~~G~y~~~~~~~~~gf~~~~~~l~~~R~~iaa 339 (686)
T PLN02636 260 KTHQVLPGVEIRDCGHKVGLNGVDNGALRFRSVRIPRDNLLNRFGDVSRDGKYTSSLPTINKRFAATLGELVGGRVGLAY 339 (686)
T ss_pred ccCCCCCCeEeccCCCccCCCCCcceEEEEeeEEECHHHhccccccccCCCcccccCCCcchHHHHHHHHHHHHHHHHHH
Confidence 59999999999999999999999999999999999953 246888888889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcCCC------CCcchHHHHHHHHHHHHHHHHH----HHHHHHHHHhcCCC-----CCh
Q 019707 205 GPLGIMQACLDVVLPYVRQREQFGRP------LGEFQFIQGKTADMYTALQSSR----SYVYSVARDCDNGK-----VDP 269 (337)
Q Consensus 205 ~~~G~~~~al~~a~~~~~~r~~~g~~------~~~~~~vq~~la~~~~~~~~~~----a~~~~a~~~~~~~~-----~~~ 269 (337)
.++|+++.+++.+++|+.+|.+||.| |.++|.+|++|+++.+.+++++ .+++.+++..+.+. +..
T Consensus 340 ~a~g~a~~Al~iAvrYa~~R~qFg~p~~~e~~I~d~q~vQ~~La~~la~~~a~~~a~~~l~~~~~~~~~~~~~~~~~~~~ 419 (686)
T PLN02636 340 GSVGVLKASNTIAIRYSLLRQQFGPPKQPEISILDYQSQQHKLMPMLASTYAFHFATEYLVERYSEMKKTHDDQLVADVH 419 (686)
T ss_pred HHHHHHHHHHHHHHHHHHcCEeCCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhH
Confidence 99999999999999999999999998 9999999999999999999954 66666666554432 245
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhCCCcccCcchHHHHHHhhccCcccCChHHHHHHHHHHHHHhc
Q 019707 270 KDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRALLKQ 336 (337)
Q Consensus 270 ~~~~~~k~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~r~~rd~~~~~~~~g~~~~~~~~l~~~~~~~ 336 (337)
..++++|.++++.+.++++.|+++|||.||+.+++++++|||++...+++|++++++.+++|.++++
T Consensus 420 ~~as~aK~~~t~~a~~~~~~~rq~~GG~Gy~~~~~l~~l~rd~~~~~t~EG~n~Vl~~~iAr~ll~~ 486 (686)
T PLN02636 420 ALSAGLKAYITSYTAKALSTCREACGGHGYAAVNRFGSLRNDHDIFQTFEGDNTVLLQQVAADLLKQ 486 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCcCcHHHHHHHhhhheeecChHHHHHHHHHHHHHHH
Confidence 6789999999999999999999999999999999999999999999999999999999999998874
No 29
>cd01163 DszC Dibenzothiophene (DBT) desulfurization enzyme C. DszC is a flavin reductase dependent enzyme, which catalyzes the first two steps of DBT desulfurization in mesophilic bacteria. DszC converts DBT to DBT-sulfoxide, which is then converted to DBT-sulfone. Bacteria with this enzyme are candidates for the removal of organic sulfur compounds from fossil fuels, which pollute the environment. An equivalent enzyme tdsC, is found in thermophilic bacteria. This alignment also contains a closely related uncharacterized subgroup.
Probab=100.00 E-value=4.9e-55 Score=403.21 Aligned_cols=324 Identities=21% Similarity=0.280 Sum_probs=284.7
Q ss_pred CccccccCCCCCccCCCCCCCHHHHHHHHHHHHhccCchhhHhhhhhhhHHHHHHhcCCHHHHhhhchhhhcCcceeEEE
Q 019707 1 MGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALA 80 (337)
Q Consensus 1 l~~~Gl~~l~~p~~~GG~~~~~~~~~~~~e~la~~~~~~a~~~~~~~~~~~~~l~~~g~~~~~~~~l~~i~~g~~~~~~~ 80 (337)
|++.||+++.+|++|||.|+++.+.+.++|++++.|+++++.+.+|. .+...+..+++++|+++|++++.+|++++ .+
T Consensus 31 l~~~G~~~l~vP~~~GG~g~~~~~~~~~~e~la~~~~s~~~~~~~~~-~~~~~l~~~g~~~~~~~~l~~~~~g~~~~-~a 108 (377)
T cd01163 31 LRQSGLGTLRVPKEYGGLGASLPDLYEVVRELAAADSNIAQALRAHF-GFVEALLLAGPEQFRKRWFGRVLNGWIFG-NA 108 (377)
T ss_pred HHHCCCccccCchhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHH-HHHHHHHhcCcHHHHHHHHHHHhCCCeEE-Ee
Confidence 46899999999999999999999999999999999999999888887 55678889999999999999999999654 69
Q ss_pred ecCCCCCCCcCCcEeEEEEeCCeEEEeeeeEeeeCCCCCCEEEEEEEeCCCCCCCCeEEEEEeCCCCCeeeccccccccC
Q 019707 81 MSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGM 160 (337)
Q Consensus 81 ~te~~~gs~~~~~~~~a~~~~~g~~l~G~k~~~s~~~~ad~~lv~a~~~~~~~~~~~~~flvp~~~~Gv~~~~~~~~~g~ 160 (337)
++||+.++ .....++++++++||+|||+|.|+|++..||+++|++++++ ...++|+||.+.|||++.++|+.+||
T Consensus 109 ~tE~~~~~-~~~~~~~~~~~~~g~~lnG~K~~is~a~~Ad~~~v~a~~~~----~~~~~~lV~~~~~Gv~i~~~~~~~G~ 183 (377)
T cd01163 109 VSERGSVR-PGTFLTATVRDGGGYVLNGKKFYSTGALFSDWVTVSALDEE----GKLVFAAVPTDRPGITVVDDWDGFGQ 183 (377)
T ss_pred ecCCCCCC-CCCceEEEEecCCEEEEeceEEeecCCccceEEEEEEEcCC----CcEEEEEEeCCCCceeecCCcccccC
Confidence 99999775 66677778888899999999999999999999999998643 35688999999999999999999999
Q ss_pred CCCcceeEEEceeeeCCCCcccCCCchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hcCC----CCCcch
Q 019707 161 RGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQRE-QFGR----PLGEFQ 235 (337)
Q Consensus 161 ~~~~~~~v~f~~v~Vp~~~vl~~~~~g~~~~~~~~~~~~~~~~a~~~G~~~~al~~a~~~~~~r~-~~g~----~~~~~~ 235 (337)
++++++++.|+||+||++++++.++.++. ....+...++..+++++|+++.+++.+++|+++|. +++. ++.++|
T Consensus 184 ~~~~s~~v~f~~v~Vp~~~~lg~~~~g~~-~~~~~~~~~l~~aa~~lG~a~~al~~~~~~~~~R~~~~g~~~~~~~~~~~ 262 (377)
T cd01163 184 RLTASGTVTFDNVRVEPDEVLPRPNAPDR-GTLLTAIYQLVLAAVLAGIARAALDDAVAYVRSRTRPWIHSGAESARDDP 262 (377)
T ss_pred ccCCcceEEEeeEEECHHHccCCCccccc-cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcCCccccccCc
Confidence 99999999999999999999998877654 22334567889999999999999999999999995 5554 578999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC------------CChhhhhHHHHHHHHHHHHHHHHHHHhhCCCcccCcc
Q 019707 236 FIQGKTADMYTALQSSRSYVYSVARDCDNGK------------VDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEY 303 (337)
Q Consensus 236 ~vq~~la~~~~~~~~~~a~~~~a~~~~~~~~------------~~~~~~~~~k~~~~~~~~~~~~~~~~~~G~~~~~~~~ 303 (337)
.+|++|+++..+++++|++++.+++.+++.. .....++++|.++++.+.++++.+++++||.||++++
T Consensus 263 ~v~~~la~~~~~l~aar~~~~~aa~~~d~~~~~~~~~~~~~~~~~~~~~~~aK~~~~~~a~~~~~~a~q~~Gg~g~~~~~ 342 (377)
T cd01163 263 YVQQVVGDLAARLHAAEALVLQAARALDAAAAAGTALTAEARGEAALAVAAAKVVVTRLALDATSRLFEVGGASATAREH 342 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhcccc
Confidence 9999999999999999999999999887641 1134677899999999999999999999999999999
Q ss_pred hHHHHHHhhccCcccCChHHHHHHHHHHHH
Q 019707 304 ATGRLLRDAKLYEIGAGTSEIRRMIIGRAL 333 (337)
Q Consensus 304 ~~~r~~rd~~~~~~~~g~~~~~~~~l~~~~ 333 (337)
|++|+|||++...+|++.+. ....++..+
T Consensus 343 ~l~r~~Rd~~~~~~h~~~~~-~~~~~~~~~ 371 (377)
T cd01163 343 NLDRHWRNARTHTLHNPVIY-KERAVGDYA 371 (377)
T ss_pred CCcchhhhhhhhhccCHHHH-HHHHhchhh
Confidence 99999999999999988753 333444333
No 30
>cd01154 AidB Proteins involved in DNA damage response, similar to the AidB gene product. AidB is one of several genes involved in the SOS adaptive response to DNA alkylation damage, whose expression is activated by the Ada protein. Its function has not been entirely elucidated; however, it is similar in sequence and function to acyl-CoA dehydrogenases. It has been proposed that aidB directly destroys DNA alkylating agents such as nitrosoguanidines (nitrosated amides) or their reaction intermediates.
Probab=100.00 E-value=6.5e-54 Score=399.12 Aligned_cols=325 Identities=29% Similarity=0.461 Sum_probs=293.3
Q ss_pred ccccccCCCCCccCCCCCCCHHHHHHHHHHHHhccCchhhHhhhhhhhHHHHHHhcCCHHHHhhhchhhhcCc----cee
Q 019707 2 GNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGE----HVG 77 (337)
Q Consensus 2 ~~~Gl~~l~~p~~~GG~~~~~~~~~~~~e~la~~~~~~a~~~~~~~~~~~~~l~~~g~~~~~~~~l~~i~~g~----~~~ 77 (337)
.+.||+++ +|+++||.+ ........+.++..+...+..+.+|. .+...|..+|+++|+ +||+++.+|+ +++
T Consensus 75 ~~~G~~~~-~~~~~~~~g--~~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~l~~~g~~~~~-~~l~~l~~g~~~~~~~~ 149 (418)
T cd01154 75 IEEGVINI-EDGPAGEGR--RHVHFAAGYLLSDAAAGLLCPLTMTD-AAVYALRKYGPEELK-QYLPGLLSDRYKTGLLG 149 (418)
T ss_pred HHcCCccC-CchhhCCCc--HHHHHHHHHHHHhcchhccCcHHHHH-HHHHHHHHhCcHHHH-HHHHHHhCCCcccchhh
Confidence 57899999 788887755 34445567788888877777766777 788899999988864 6999999997 899
Q ss_pred EEEecCCCCCCCcCCcEeEEEEe-CCeEEEeeeeEeeeCCCCCCEEEEEEEeCCC-CCCCCeEEEEEeCCCC-----Cee
Q 019707 78 ALAMSEPNAGSDVVGMKCKADRV-DGGYIINGNKMWCTNGPVAQTLVVYAKTDIK-AGSKGITAFIIEKGMP-----GFS 150 (337)
Q Consensus 78 ~~~~te~~~gs~~~~~~~~a~~~-~~g~~l~G~k~~~s~~~~ad~~lv~a~~~~~-~~~~~~~~flvp~~~~-----Gv~ 150 (337)
++++|||+.|||....+|+|+++ +|+|+|||.|+|+|++ .||+++|+|+++++ ++++++++|+||++.| ||+
T Consensus 150 ~~~~TEp~~GSD~~~~~T~A~~~~g~~~~LnG~K~f~s~a-~Ad~~lv~Art~~~~~~~~gls~flVp~~~~~~~~~Gv~ 228 (418)
T cd01154 150 GTWMTEKQGGSDLGANETTAERSGGGVYRLNGHKWFASAP-LADAALVLARPEGAPAGARGLSLFLVPRLLEDGTRNGYR 228 (418)
T ss_pred eeeecCCCcccchhhCeEEEEECCCCcEEEEEEEEEecCc-ccCEEEEEEECCCCCCCCCcEEEEEEeccCCCCCCCCeE
Confidence 99999999999999999999999 8899999999999999 99999999998754 4567899999999885 999
Q ss_pred eccccccccCCCCcceeEEEceeeeCCCCcccCCCchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCC
Q 019707 151 TAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRP 230 (337)
Q Consensus 151 ~~~~~~~~g~~~~~~~~v~f~~v~Vp~~~vl~~~~~g~~~~~~~~~~~~~~~~a~~~G~~~~al~~a~~~~~~r~~~g~~ 230 (337)
+.+.|+++|++++++++|.|+|| .++++|.++.|+..+...+...|+..++.++|+++++++.+++|+++|.++|.+
T Consensus 229 i~~~~~~~G~r~~~~~ev~f~dv---~~~~lG~~g~G~~~~~~~l~~~R~~~aa~~~G~a~~al~~a~~ya~~R~~fg~~ 305 (418)
T cd01154 229 IRRLKDKLGTRSVATGEVEFDDA---EAYLIGDEGKGIYYILEMLNISRLDNAVAALGIMRRALSEAYHYARHRRAFGKP 305 (418)
T ss_pred ecccccccCCCCCCeEEEEecCc---CccccCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCCc
Confidence 99999999999999999999998 488999999999999899999999999999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC---C-----ChhhhhHHHHHHHHHHHHHHHHHHHhhCCCcccCc
Q 019707 231 LGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGK---V-----DPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNE 302 (337)
Q Consensus 231 ~~~~~~vq~~la~~~~~~~~~~a~~~~a~~~~~~~~---~-----~~~~~~~~k~~~~~~~~~~~~~~~~~~G~~~~~~~ 302 (337)
+.++|.+|++|+++...+++++++++.+++.++... + ....++++|.++++.+.++++.+++++||.||.++
T Consensus 306 l~~~~~v~~~La~~~~~~eaar~l~~~aa~~~~~~~~~~~~~~~~~r~~~~~aK~~~~e~a~~v~~~a~~i~Gg~G~~~~ 385 (418)
T cd01154 306 LIDHPLMRRDLAEMEVDVEAATALTFRAARAFDRAAADKPVEAHMARLATPVAKLIACKRAAPVTSEAMEVFGGNGYLEE 385 (418)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcEEcCC
Confidence 999999999999999999999999999999887632 1 12256779999999999999999999999999999
Q ss_pred chHHHHHHhhccCcccCChHHHHHHHHHHHHHh
Q 019707 303 YATGRLLRDAKLYEIGAGTSEIRRMIIGRALLK 335 (337)
Q Consensus 303 ~~~~r~~rd~~~~~~~~g~~~~~~~~l~~~~~~ 335 (337)
+|++|+|||++...+++|++++++..+.|.+.|
T Consensus 386 ~~l~r~~RDa~~~~i~~Gt~~i~~~~~~r~~~~ 418 (418)
T cd01154 386 WPVARLHREAQVTPIWEGTGNIQALDVLRVLVK 418 (418)
T ss_pred ChHHHHHhcCcCcceeccHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999998754
No 31
>PLN02312 acyl-CoA oxidase
Probab=100.00 E-value=3.3e-53 Score=409.30 Aligned_cols=332 Identities=20% Similarity=0.252 Sum_probs=299.9
Q ss_pred ccccccCCCCCccCCCCCCCHHHHHHHHHHHHhccCchhhHhhhhhhhHHHHHHhcCCHHHHhhhchhhhcCcceeEEEe
Q 019707 2 GNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAM 81 (337)
Q Consensus 2 ~~~Gl~~l~~p~~~GG~~~~~~~~~~~~e~la~~~~~~a~~~~~~~~~~~~~l~~~g~~~~~~~~l~~i~~g~~~~~~~~ 81 (337)
.+.|+++..+|++ |.+ ++...+.++|++++.|++++..+..|.+++...|..+|+++|+++|||++.+|+.++|+++
T Consensus 115 ~~~g~~~~~~pe~--g~~-~~~~~~~~~Eel~~~d~s~~~~~~vh~~l~~~~I~~~GTeeqk~~~L~~~~~ge~ig~fA~ 191 (680)
T PLN02312 115 LERGVFRGWLTET--GPE-AELRKLALLEVIGIYDHSLAIKLGVHFFLWGGAIKFLGTKRHHDKWLKDTEDYVVKGCFAM 191 (680)
T ss_pred HHhhhcCCCCCCC--CCc-cHHHHHHHHHHHHHhcchHHHHHHhhhhhHHHHHHHhCCHHHHHHHHHHHhCCCeeeEeee
Confidence 5788999999985 333 6888899999999999998877888877888899999999999999999999999999999
Q ss_pred cCCCCCCCcCCcEeEEEEe--CCeEEEe-----eeeEeeeCC-CCCCEEEEEEEeCCCCCCCCeEEEEEeC---C---CC
Q 019707 82 SEPNAGSDVVGMKCKADRV--DGGYIIN-----GNKMWCTNG-PVAQTLVVYAKTDIKAGSKGITAFIIEK---G---MP 147 (337)
Q Consensus 82 te~~~gs~~~~~~~~a~~~--~~g~~l~-----G~k~~~s~~-~~ad~~lv~a~~~~~~~~~~~~~flvp~---~---~~ 147 (337)
|||++|||+..++|+|+++ +|+|+|| |.|+|++|+ ..||+++|+|++..+++..++++|+||. + .|
T Consensus 192 TEpghGSdv~~leTtAt~D~~~defVLNtPt~~g~K~wig~a~~~A~~~vV~Arl~~~~~~~Gv~~FlV~ird~~~~~~P 271 (680)
T PLN02312 192 TELGHGSNVRGIETVTTYDPKTEEFVINTPCESAQKYWIGGAANHATHTIVFSQLHINGKNEGVHAFIAQIRDQDGNICP 271 (680)
T ss_pred cCCCcCcchhcCeEEEEEeCCCCEEEECCCCCCeEEECccCCcccCCEEEEEEEECCCCCCCCeEEEEEeecCCCCCCCC
Confidence 9999999999999999998 4679999 799999998 7999999999997655567899999983 3 79
Q ss_pred CeeeccccccccCCCCcceeEEEceeeeCCCCcccC----------------CCchHHHHHHhhhHHHHHHHHHHHHHHH
Q 019707 148 GFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQ----------------EGKGVYVMMSGLDLERLVLAAGPLGIMQ 211 (337)
Q Consensus 148 Gv~~~~~~~~~g~~~~~~~~v~f~~v~Vp~~~vl~~----------------~~~g~~~~~~~~~~~~~~~~a~~~G~~~ 211 (337)
||++.+..+++|+++.+++.+.||||+||.+++|+. ++.|+..+...+..+|+..++.++|+++
T Consensus 272 GV~ig~~~~K~G~~g~dng~l~FdnVrVP~~nlLg~~~~V~~~G~y~~~~~~~~~gf~~~~~~l~~~R~~iaa~a~g~a~ 351 (680)
T PLN02312 272 NIRIADCGHKIGLNGVDNGRIWFDNLRIPRENLLNSVADVSPDGKYVSAIKDPDQRFGAFLAPLTSGRVTIAVSAIYSSK 351 (680)
T ss_pred CEEeccCCCcccccCCCceEEEEccEEECHHHhCCccceeCCCCceecCCCCccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999983 4677888788899999999999999999
Q ss_pred HHHHHHHHHHHhhhhcCC----C---CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-----CCChhhhhHHHHHH
Q 019707 212 ACLDVVLPYVRQREQFGR----P---LGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNG-----KVDPKDCAGVILCA 279 (337)
Q Consensus 212 ~al~~a~~~~~~r~~~g~----~---~~~~~~vq~~la~~~~~~~~~~a~~~~a~~~~~~~-----~~~~~~~~~~k~~~ 279 (337)
.+++.+++|+++|.+||. | |.++|.+|++|+++.+.+++++.....+.+..+.. .+....++++|.++
T Consensus 352 ~Al~iAvrYa~~R~QFg~~~~~~E~~I~dyq~~Q~rLa~~la~~~a~~~~a~~l~~~~~~~~~~~~~~~~~~as~aKa~~ 431 (680)
T PLN02312 352 VGLAIAIRYSLSRRAFSVTPNGPEVLLLDYPSHQRRLLPLLAKTYAMSFAANDLKMIYVKRTPESNKAIHVVSSGFKAVL 431 (680)
T ss_pred HHHHHHHHHHHhCeecCCCCCCccchHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHH
Confidence 999999999999999985 4 99999999999999999999877777766655443 23456889999999
Q ss_pred HHHHHHHHHHHHHhhCCCcccCcchHHHHHHhhccCcccCChHHHHHHHHHHHHHhc
Q 019707 280 AERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRALLKQ 336 (337)
Q Consensus 280 ~~~~~~~~~~~~~~~G~~~~~~~~~~~r~~rd~~~~~~~~g~~~~~~~~l~~~~~~~ 336 (337)
++.+.++++.|+|+|||+||+.+++++++|||++...+++|++++++.+++|.++++
T Consensus 432 t~~a~~~~~~~rq~~GG~Gy~~~~~l~~l~rd~~~~~t~EG~n~Vl~~~iAr~ll~~ 488 (680)
T PLN02312 432 TWHNMRTLQECREACGGQGLKTENRVGQLKAEYDVQSTFEGDNNVLMQQVSKALLAE 488 (680)
T ss_pred HHHHHHHHHHHHHHhcCccccccCcHHHHHHhhhhheeecCcHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999988763
No 32
>cd01159 NcnH Naphthocyclinone hydroxylase. Naphthocyclinone is an aromatic polyketide and an antibiotic, which is active against Gram-positive bacteria. Polyketides are secondary metabolites, which have important biological functions such as antitumor, immunosupressive or antibiotic activities. NcnH is a hydroxylase involved in the biosynthesis of naphthocyclinone and possibly other polyketides.
Probab=100.00 E-value=9.5e-53 Score=386.89 Aligned_cols=319 Identities=21% Similarity=0.256 Sum_probs=276.9
Q ss_pred CccccccCCCCCccCCCCCCCHHHHHHHHHHHHhccCchhhHhhhhhhhHHHHHHhcCCHHHHhhhchhhhcCcceeEEE
Q 019707 1 MGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALA 80 (337)
Q Consensus 1 l~~~Gl~~l~~p~~~GG~~~~~~~~~~~~e~la~~~~~~a~~~~~~~~~~~~~l~~~g~~~~~~~~l~~i~~g~~~~~~~ 80 (337)
|++.||+++.+|++|||.|+++.+...++|+|++.|+++++++..+. .....+..+++++|++.|++... + ..+.
T Consensus 31 l~~~Gl~~~~vP~e~GG~g~~~~~~~~~~e~la~~~~s~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~--~~~g- 105 (370)
T cd01159 31 LREIGFFRMFVPKRYGGLEGDFAEFAEAIATLAEACGSAAWVASIVA-THSRMLAAFPPEAQEEVWGDGPD-T--LLAG- 105 (370)
T ss_pred HHHCChHhhCCchhcCCCCCCHHHHHHHHHHHHhhCchHHHHHHHHH-HHHHHHHhCCHHHHHHHhCCCCC-c--eEEe-
Confidence 46899999999999999999999999999999999999998766665 66677888899999988876421 1 1111
Q ss_pred ecCCCCCCCcCCcEeEEEEeCCeEEEeeeeEeeeCCCCCCEEEEEEEeCCCCCCCCeEEEEEeCCCCCeeeccccccccC
Q 019707 81 MSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGM 160 (337)
Q Consensus 81 ~te~~~gs~~~~~~~~a~~~~~g~~l~G~k~~~s~~~~ad~~lv~a~~~~~~~~~~~~~flvp~~~~Gv~~~~~~~~~g~ 160 (337)
..++.+++++++|||+|||+|.|+|++..+|+++|.++++++++.+++++|+||++ ||++.+.|+.+||
T Consensus 106 ---------~~~~~t~A~~~~~gy~lnG~K~~it~~~~ad~~~v~a~~~~~~~~~~~~~~lV~~~--Gv~~~~~~~~~G~ 174 (370)
T cd01159 106 ---------SYAPGGRAERVDGGYRVSGTWPFASGCDHADWILVGAIVEDDDGGPLPRAFVVPRA--EYEIVDTWHVVGL 174 (370)
T ss_pred ---------eecCCceeEEeCCeEEEeccccCccCCCcCceeEeeeECCCCCCCCcceEEEEEhH--HCEEecccccccc
Confidence 12356789999999999999999999999999999999865545678999999988 8999999999999
Q ss_pred CCCcceeEEEceeeeCCCCcccCCC------chHH---HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc---C
Q 019707 161 RGSDTCELVFENCFVPNENVLGQEG------KGVY---VMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQF---G 228 (337)
Q Consensus 161 ~~~~~~~v~f~~v~Vp~~~vl~~~~------~g~~---~~~~~~~~~~~~~~a~~~G~~~~al~~a~~~~~~r~~~---g 228 (337)
++++++++.|+||+||++++|+..+ .+.. .......++++.++++++|+++.+++.+++|+++|.++ |
T Consensus 175 r~~~s~~v~f~~v~Vp~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~aa~~lG~a~~~l~~~~~~~~~R~~~~~~g 254 (370)
T cd01159 175 RGTGSNTVVVDDVFVPEHRTLTAGDMMAGDGPGGSTPVYRMPLRQVFPLSFAAVSLGAAEGALAEFLELAGKRVRQYGAA 254 (370)
T ss_pred cccCCCcEEEcceEcCccceecccccccCCCCCCCCccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccCCCc
Confidence 9999999999999999999997542 2211 22334567889999999999999999999999999986 6
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-----C---ChhhhhHHHHHHHHHHHHHHHHHHHhhCCCccc
Q 019707 229 RPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGK-----V---DPKDCAGVILCAAERATQVTLQAIQCLGGNGYV 300 (337)
Q Consensus 229 ~~~~~~~~vq~~la~~~~~~~~~~a~~~~a~~~~~~~~-----~---~~~~~~~~k~~~~~~~~~~~~~~~~~~G~~~~~ 300 (337)
.|+.++|.+|++|+++...+++++++++.+++.+++.. . ....+.++|.++++.+.++++.+++++||.||.
T Consensus 255 ~~i~~~~~v~~~la~~~~~l~~a~~~~~~aa~~~~~~~~~~~~~~~~~~~~~~~aK~~~~e~~~~~~~~a~~~~Gg~g~~ 334 (370)
T cd01159 255 VKMAEAPITQLRLAEAAAELDAARAFLERATRDLWAHALAGGPIDVEERARIRRDAAYAAKLSAEAVDRLFHAAGGSALY 334 (370)
T ss_pred cccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhcc
Confidence 78999999999999999999999999999999887531 1 123577889999999999999999999999999
Q ss_pred CcchHHHHHHhhccCcccCChH-HHHHHHHHHHHHh
Q 019707 301 NEYATGRLLRDAKLYEIGAGTS-EIRRMIIGRALLK 335 (337)
Q Consensus 301 ~~~~~~r~~rd~~~~~~~~g~~-~~~~~~l~~~~~~ 335 (337)
+++|++|+|||+++..+|+|++ ++++..|+|.+++
T Consensus 335 ~~~~l~r~~Rd~~~~~~~~~~~~~~~~~~~~~~~l~ 370 (370)
T cd01159 335 TASPLQRIWRDIHAAAQHAALNPETAAEAYGRALLG 370 (370)
T ss_pred cCCcHHHHHHHHHHHhhhhccCcchHHHHHHHHhcC
Confidence 9999999999999999999999 9999999999875
No 33
>PRK11561 isovaleryl CoA dehydrogenase; Provisional
Probab=100.00 E-value=1.6e-50 Score=380.13 Aligned_cols=320 Identities=23% Similarity=0.367 Sum_probs=277.1
Q ss_pred ccccccCCCCCccCCCCCCCHHHHHHHHHHH-HhccCchhhHhhhhhhhHHHHHHhcCCHHHHhhhchhhhcCc------
Q 019707 2 GNFNLHGITAPQEYGGLGLGYLYHCIAMEEI-SRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGE------ 74 (337)
Q Consensus 2 ~~~Gl~~l~~p~~~GG~~~~~~~~~~~~e~l-a~~~~~~a~~~~~~~~~~~~~l~~~g~~~~~~~~l~~i~~g~------ 74 (337)
.+.||.++..++++| ....-...+.+.+ +..++.....+++. .+...+..+++++|+++|+|++.+|+
T Consensus 96 ~~~g~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~g~~cp~~mT--~~a~~~l~~~~~e~~~~~lp~l~sg~~~~~~~ 170 (538)
T PRK11561 96 CANRVHNLAWEEDAR---SGAFVARAARFMLHAQVEAGTLCPITMT--FAATPLLLQMLPAPFQDWLTPLLSDRYDSHLL 170 (538)
T ss_pred HHcCCccCCCCCccC---chHHHHHHHHHHHHhhhhHHhhchHHHH--HHHHHHHHhcCHHHHHHHHHHHhCCCcccccc
Confidence 357888888887775 2222222333333 44444444444343 34555666688999999999999997
Q ss_pred -------ceeEEEecCCCCCCCcCCcEeEEEEe-CCeEEEeeeeEeeeCCCCCCEEEEEEEeCCCCCCCCeEEEEEeCCC
Q 019707 75 -------HVGALAMSEPNAGSDVVGMKCKADRV-DGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGM 146 (337)
Q Consensus 75 -------~~~~~~~te~~~gs~~~~~~~~a~~~-~~g~~l~G~k~~~s~~~~ad~~lv~a~~~~~~~~~~~~~flvp~~~ 146 (337)
++.++++|||+.|||+...+|+|+++ +|+|+|||.|+|+| ++.+|+++|+|+++ +++++|+||++.
T Consensus 171 ~~~~~~~~~~~~a~TEp~~GSDv~~~~T~A~~~~gg~w~LnG~K~fiS-a~~AD~~lVlArt~-----~Gls~FlVp~~~ 244 (538)
T PRK11561 171 PGGQKRGLLIGMGMTEKQGGSDVLSNTTRAERLADGSYRLVGHKWFFS-VPQSDAHLVLAQAK-----GGLSCFFVPRFL 244 (538)
T ss_pred cchhhhhheeEEEecCCCCCCchhhCeeEEEECCCCeEEEEEEEEEEE-chhhCEEEEEEEEC-----CceEEEEEECCC
Confidence 45699999999999999999999995 56799999999999 68999999999985 479999999998
Q ss_pred C-----CeeeccccccccCCCCcceeEEEceeeeCCCCcccCCCchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019707 147 P-----GFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYV 221 (337)
Q Consensus 147 ~-----Gv~~~~~~~~~g~~~~~~~~v~f~~v~Vp~~~vl~~~~~g~~~~~~~~~~~~~~~~a~~~G~~~~al~~a~~~~ 221 (337)
| ||++.+.++++|++++++++|+|+|| .+++||.++.|+..+...+...|+..++.++|+++++++.+++|+
T Consensus 245 p~g~~nGv~i~rl~~klG~r~~~t~ev~f~dv---~~~llG~~g~G~~~i~~~l~~~Rl~~a~~a~G~a~~Al~~A~~yA 321 (538)
T PRK11561 245 PDGQRNAIRLERLKDKLGNRSNASSEVEFQDA---IGWLLGEEGEGIRLILKMGGMTRFDCALGSHGLMRRAFSVAIYHA 321 (538)
T ss_pred CCCCCCceEEecccccccCCCCceeEEEECCH---HHHHCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8 79998899999999999999999999 488999999999999999999999999999999999999999999
Q ss_pred HhhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC------hhhhhHHHHHHHHHHHHHHHHHHHhhC
Q 019707 222 RQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVD------PKDCAGVILCAAERATQVTLQAIQCLG 295 (337)
Q Consensus 222 ~~r~~~g~~~~~~~~vq~~la~~~~~~~~~~a~~~~a~~~~~~~~~~------~~~~~~~k~~~~~~~~~~~~~~~~~~G 295 (337)
++|.+||+|++++|.+|+.|++|..++++++++++.+++.+|.+.+. ....+++|.++++.+.++++.++|++|
T Consensus 322 ~~R~~FG~~L~~~q~vq~~LAdm~~~ieaar~l~~~aa~~~d~~~~~~~~~~~rl~t~~aK~~~~e~a~~v~~~Amqv~G 401 (538)
T PRK11561 322 HQRQVFGKPLIEQPLMRQVLSRMALQLEGQTALLFRLARAWDRRADAKEALWARLFTPAAKFVICKRGIPFVAEAMEVLG 401 (538)
T ss_pred HhCccCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999876421 224557899999999999999999999
Q ss_pred CCcccCcchHHHHHHhhccCcccCChHHHHHHHHHHHHHh
Q 019707 296 GNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRALLK 335 (337)
Q Consensus 296 ~~~~~~~~~~~r~~rd~~~~~~~~g~~~~~~~~l~~~~~~ 335 (337)
|.||++++|++|+|||++...+++|++++++..+.|.+.|
T Consensus 402 G~Gy~ee~~lerl~RDa~v~~I~eGt~~i~~ldv~r~l~~ 441 (538)
T PRK11561 402 GIGYCEESELPRLYREMPVNSIWEGSGNIMCLDVLRVLNK 441 (538)
T ss_pred CccCCCCcHHHHHHHHHhhhhcccCCHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999876
No 34
>cd00567 ACAD Acyl-CoA dehydrogenase. Both mitochondrial acyl-CoA dehydrogenases (ACAD) and peroxisomal acyl-CoA oxidases (AXO) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. In contrast, AXO catalyzes a different oxidative half-reaction, in which the reduced FAD is reoxidized by molecular oxygen. The ACAD family includes the eukaryotic beta-oxidation enzymes, short (SCAD), medium (MCAD), long (LCAD) and very-long (VLCAD) chain acyl-CoA dehydrogenases. These enzymes all share high sequence similarity, but differ in their substrate specificities. The ACAD family also includes amino acid catabolism enzymes such as Isovaleryl-CoA dehydrogenase (IVD), short/branched chain acyl-CoA dehydrogenases(SBCAD), Isob
Probab=100.00 E-value=1.1e-49 Score=361.20 Aligned_cols=283 Identities=44% Similarity=0.710 Sum_probs=265.9
Q ss_pred hHHHHHHhcCCHHHHhhhchhhhcCcceeEEEecCCCCCCCcCCcEeEEEEeCCeEEEeeeeEeeeCCCCCCEEEEEEEe
Q 019707 49 LCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKT 128 (337)
Q Consensus 49 ~~~~~l~~~g~~~~~~~~l~~i~~g~~~~~~~~te~~~gs~~~~~~~~a~~~~~g~~l~G~k~~~s~~~~ad~~lv~a~~ 128 (337)
++...|..+|+++|+++|++.+.+|+.+++++++||.+|+|...+.++++++++||+|||+|+|+|++..+|+++|++++
T Consensus 43 ~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~sE~~~gs~~~~~~~~a~~~~~g~~l~G~k~~~s~~~~ad~~lv~a~~ 122 (327)
T cd00567 43 LGAALLLAYGTEEQKERYLPPLASGEAIAAFALTEPGAGSDLAGIRTTARKDGDGYVLNGRKIFISNGGDADLFIVLART 122 (327)
T ss_pred hchHHHHHhCCHHHHHHHHHHHhCCCceEEEEecCCCCCCchhhCEeEEEEeCCEEEEEEEEEEecCCccCCEEEEEEEe
Confidence 45667888999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCC-CCCCeEEEEEeCCCCCeeeccccccccCCCCcceeEEEceeeeCCCCcccCCCchHHHHHHhhhHHHHHHHHHHH
Q 019707 129 DIKA-GSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPL 207 (337)
Q Consensus 129 ~~~~-~~~~~~~flvp~~~~Gv~~~~~~~~~g~~~~~~~~v~f~~v~Vp~~~vl~~~~~g~~~~~~~~~~~~~~~~a~~~ 207 (337)
++++ +.+++.+|+||++.|||++.+.|+.+||++++++++.|+||+||++++++..+.++......+...++..+++++
T Consensus 123 ~~~~~~~~~~~~~lvp~~~~Gv~~~~~~~~~G~~~~~~~~v~~~~v~Vp~~~~l~~~~~g~~~~~~~~~~~~~~~aa~~~ 202 (327)
T cd00567 123 DEEGPGHRGISAFLVPADTPGVTVGRIWDKMGMRGSGTGELVFDDVRVPEDNLLGEEGGGFELAMKGLNVGRLLLAAVAL 202 (327)
T ss_pred CCCCCCCCceEEEEEeCCCCCeEeccccccccCCCCceEEEEECCEEecHHHcCCCCCchHHHHHHHHHHHHHHHHHHHH
Confidence 6543 456789999999999999999999999999999999999999999999999888887788888999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-ChhhhhHHHHHHHHHHHHH
Q 019707 208 GIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKV-DPKDCAGVILCAAERATQV 286 (337)
Q Consensus 208 G~~~~al~~a~~~~~~r~~~g~~~~~~~~vq~~la~~~~~~~~~~a~~~~a~~~~~~~~~-~~~~~~~~k~~~~~~~~~~ 286 (337)
|+++.+++.+++|+++|.++|.|+.++|.+|++|+++...+++++++++.+++.+++... ....+.++|.++++.+.++
T Consensus 203 G~a~~al~~~~~~~~~r~~~g~~~~~~~~vq~~la~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~k~~~~~~a~~~ 282 (327)
T cd00567 203 GAARAALDEAVEYAKQRKQFGKPLAEFQAVQFKLADMAAELEAARLLLYRAAWLLDQGPDEARLEAAMAKLFATEAAREV 282 (327)
T ss_pred HHHHHHHHHHHHHHHhccccCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999987654 5677889999999999999
Q ss_pred HHHHHHhhCCCcccCcchHHHHHHhhccCcccCChHHHHHHHHHH
Q 019707 287 TLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGR 331 (337)
Q Consensus 287 ~~~~~~~~G~~~~~~~~~~~r~~rd~~~~~~~~g~~~~~~~~l~~ 331 (337)
++.+++++||.||.+++|++|+|||++.+.+.+|++++++..+++
T Consensus 283 ~~~~~~~~Gg~g~~~~~~l~r~~rd~~~~~~~~G~~~~~~~~~~~ 327 (327)
T cd00567 283 ADLAMQIHGGRGYSREYPVERYLRDARAARIAEGTAEIQRLIIAR 327 (327)
T ss_pred HHHHHHHccCccccCCCHHHHHHHhhhcceeecCHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999887753
No 35
>PTZ00460 acyl-CoA dehydrogenase; Provisional
Probab=100.00 E-value=3.9e-49 Score=379.56 Aligned_cols=301 Identities=21% Similarity=0.255 Sum_probs=269.1
Q ss_pred cCchhhHhhhhhhhHHHHHHhcCCHHHHhhhchhhhcCcceeEEEecCCCCCCCcCCcEeEEEEe--CCeEEEe-----e
Q 019707 36 SGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRV--DGGYIIN-----G 108 (337)
Q Consensus 36 ~~~~a~~~~~~~~~~~~~l~~~g~~~~~~~~l~~i~~g~~~~~~~~te~~~gs~~~~~~~~a~~~--~~g~~l~-----G 108 (337)
+++....+..|.+++...|..+|+++|+++|||++.+|+.++|+++|||++|||+...+|+|+.+ +|+|+|| |
T Consensus 88 ~~~~~~~~~vh~~~~~~~I~~~GT~eQk~~~Lp~~~~ge~ig~~A~TEpghGSdv~~leTtAt~d~~~defvLntPt~~g 167 (646)
T PTZ00460 88 CPQGTFISTVHFAMVIPAFQVLGTDEQINLWMPSLLNFEIVGCYAQTELGHGSDVQNLETTATYDKQTNEFVIHTPSVEA 167 (646)
T ss_pred ccCCCceEEeeHhhHHHHHHHhCCHHHHHHHHHHHhCCChheeeeecCCCccCCcccceEEEEEcCCCCEEEECCCCCCe
Confidence 34444455677767777899999999999999999999999999999999999999999999986 5779998 9
Q ss_pred eeEeeeC-CCCCCEEEEEEEeCCCCCCCCeEEEEEeCC-------CCCeeeccccccccCCCCcceeEEEceeeeCCCCc
Q 019707 109 NKMWCTN-GPVAQTLVVYAKTDIKAGSKGITAFIIEKG-------MPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENV 180 (337)
Q Consensus 109 ~k~~~s~-~~~ad~~lv~a~~~~~~~~~~~~~flvp~~-------~~Gv~~~~~~~~~g~~~~~~~~v~f~~v~Vp~~~v 180 (337)
.|+|+++ +..||+++|+|++..+.++.++++|+||.+ .|||++.+..+++|+++.+++.+.||||+||.+++
T Consensus 168 ~K~wi~~~g~~A~~~vV~Arl~~~~~~~Gi~~FlV~ird~~~~~~~pGV~vg~~~~k~G~~~~dng~l~Fd~VrVP~~nl 247 (646)
T PTZ00460 168 VKFWPGELGFLCNFALVYAKLIVNGKNKGVHPFMVRIRDKETHKPLQGVEVGDIGPKMGYAVKDNGFLSFDHYRIPLDSL 247 (646)
T ss_pred EEEccCCCCCCCCEEEEEEEECcCCCCCceEEEEEeccccCCCCCCCCeEEeccccccCcCCCCceEEEeceEEECHHHh
Confidence 9999998 688999999999975545678999999943 49999998999999999999999999999999999
Q ss_pred ccC------CC----ch-HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC------CCCcchHHHHHHHH
Q 019707 181 LGQ------EG----KG-VYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGR------PLGEFQFIQGKTAD 243 (337)
Q Consensus 181 l~~------~~----~g-~~~~~~~~~~~~~~~~a~~~G~~~~al~~a~~~~~~r~~~g~------~~~~~~~vq~~la~ 243 (337)
|+. .+ .| +......+...|+..++.++|+++.+++.+++|+++|.+||. ||.++|.+|++|++
T Consensus 248 Lg~~~~v~~~G~~~~~g~~~~~~~~l~~~R~~iaa~~~g~a~~Al~iAvrYa~~R~QFg~~~~~E~pI~~yQ~~Q~rLa~ 327 (646)
T PTZ00460 248 LARYIKVSEDGQVERQGNPKVSYASMMYMRNLIIDQYPRFAAQALTVAIRYSIYRQQFTNDNKQENSVLEYQTQQQKLLP 327 (646)
T ss_pred CCcccccCCCCccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCCcHhhhHHHHHHHHH
Confidence 985 23 13 566667778899999999999999999999999999999997 99999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCC------CC------ChhhhhHHHHHHHHHHHHHHHHHHHhhCCCcccCcchHHHHHHh
Q 019707 244 MYTALQSSRSYVYSVARDCDNG------KV------DPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRD 311 (337)
Q Consensus 244 ~~~~~~~~~a~~~~a~~~~~~~------~~------~~~~~~~~k~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~r~~rd 311 (337)
+.+.+++++.+.+.+++..++. .+ ....++++|.++++.+.++++.|+|+|||+||+++++++++|||
T Consensus 328 ~la~~~A~r~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~as~aK~~~t~~a~~~~~~~~q~~GG~Gy~~~~~l~~~~rd 407 (646)
T PTZ00460 328 LLAEFYACIFGGLKIKELVDDNFNRVQKNDFSLLQLTHAILSAAKANYTYFVSNCAEWCRLSCGGHGYAHYSGLPAIYFD 407 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhccCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccCcHHHHHHH
Confidence 9999999999999998877642 11 24568899999999999999999999999999999999999999
Q ss_pred hccCcccCChHHHHHHHHHHHHHhc
Q 019707 312 AKLYEIGAGTSEIRRMIIGRALLKQ 336 (337)
Q Consensus 312 ~~~~~~~~g~~~~~~~~l~~~~~~~ 336 (337)
++...+++|++++++..++|.++++
T Consensus 408 a~~~~t~eG~n~vl~~~iar~ll~~ 432 (646)
T PTZ00460 408 MSPNITLEGENQIMYLQLARYLLKQ 432 (646)
T ss_pred hccceeecCcHHHHHHHHHHHHHHH
Confidence 9999999999999999999998864
No 36
>cd01150 AXO Peroxisomal acyl-CoA oxidase. Peroxisomal acyl-CoA oxidases (AXO) catalyze the first set in the peroxisomal fatty acid beta-oxidation, the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. In a second oxidative half-reaction, the reduced FAD is reoxidized by molecular oxygen. AXO is generally a homodimer, but it has been reported to form a different type of oligomer in yeast. There are several subtypes of AXO's, based on substrate specificity. Palmitoyl-CoA oxidase acts on straight-chain fatty acids and prostanoids; whereas, the closely related Trihydroxycoprostanoly-CoA oxidase has the greatest activity for 2-methyl branched side chains of bile precursors. Pristanoyl-CoA oxidase, acts on 2-methyl branched fatty acids. AXO has an additional domain, C-terminal to the region with similarity to acyl-CoA dehydrogenases, which is included in this alignment.
Probab=100.00 E-value=2.9e-49 Score=380.96 Aligned_cols=316 Identities=22% Similarity=0.260 Sum_probs=283.3
Q ss_pred CHHHHHHHHHHHHhccCchhhHhhhhhhhHHHHHHhcCCHHHHhhhchhhhcCcceeEEEecCCCCCCCcCCcEeEEEEe
Q 019707 21 GYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRV 100 (337)
Q Consensus 21 ~~~~~~~~~e~la~~~~~~a~~~~~~~~~~~~~l~~~g~~~~~~~~l~~i~~g~~~~~~~~te~~~gs~~~~~~~~a~~~ 100 (337)
++.+...+.|++++.|++++..+..|.+++...|..+|+++|+++|+|++.+|+.++|+++|||++|||...++|+|+.+
T Consensus 80 ~~~~~~~~~e~l~~~d~~~~~~~~~h~~l~~~~i~~~Gt~eq~~~~L~~~~~g~~ig~~a~TE~ghGSdv~~leTtAt~d 159 (610)
T cd01150 80 DPEKMLALTNSLGGYDLSLGAKLGLHLGLFGNAIKNLGTDEHQDYWLQGANNLEIIGCFAQTELGHGSNLQGLETTATYD 159 (610)
T ss_pred CHHHHHHHHHHHhccCccccceeeehHHHHHHHHHHhCCHHHHHHHHHHHhccChheeeeccccCcCcCcccceeEEEEC
Confidence 67788889999999999988777788768888999999999999999999999999999999999999999999999998
Q ss_pred C--CeEEEe-----eeeEeeeCCC-CCCEEEEEEEeCCCCCCCCeEEEEEeCC-------CCCeeeccccccccCCCCcc
Q 019707 101 D--GGYIIN-----GNKMWCTNGP-VAQTLVVYAKTDIKAGSKGITAFIIEKG-------MPGFSTAQKLDKLGMRGSDT 165 (337)
Q Consensus 101 ~--~g~~l~-----G~k~~~s~~~-~ad~~lv~a~~~~~~~~~~~~~flvp~~-------~~Gv~~~~~~~~~g~~~~~~ 165 (337)
+ ++|+|| |.|+|++|+. .+++++|+|++..+++..++++|+||.+ .|||++.+.++++|+++.++
T Consensus 160 ~~t~efvLntp~~~g~K~wi~~~~~~a~~~vV~Arl~~~g~~~Gv~~FlVp~rd~~~~~~~pGV~i~~~~~k~G~~g~dn 239 (610)
T cd01150 160 PLTQEFVINTPDFTATKWWPGNLGKTATHAVVFAQLITPGKNHGLHAFIVPIRDPKTHQPLPGVTVGDIGPKMGLNGVDN 239 (610)
T ss_pred CCCCeEEECCCCCCceEECccCcccCCCEEEEEEEeccCCCCCCeEEEEEeccccccCCCCCCeEEeecccccCCCCCCe
Confidence 8 889999 9999999975 4999999999865545578999999974 39999999999999999999
Q ss_pred eeEEEceeeeCCCCcccC----------------CCchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC
Q 019707 166 CELVFENCFVPNENVLGQ----------------EGKGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGR 229 (337)
Q Consensus 166 ~~v~f~~v~Vp~~~vl~~----------------~~~g~~~~~~~~~~~~~~~~a~~~G~~~~al~~a~~~~~~r~~~g~ 229 (337)
+.+.||||+||.+++|+. ++.++..+...+..+|+..++.++|.++.+++.+++|++.|.+||.
T Consensus 240 g~l~Fd~vrVP~~nlL~~~~~v~~~G~~~~~~~~~~~g~~~~~~~~~~gRl~ia~~a~g~~~~al~iAi~Ya~~R~qfg~ 319 (610)
T cd01150 240 GFLQFRNVRIPRENLLNRFGDVSPDGTYVSPFKDPNKRYGAMLGTRSGGRVGLIYDAAMSLKKAATIAIRYSAVRRQFGP 319 (610)
T ss_pred EEEEEeeeEecHHHhcccccccCCCCceecCCCchhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHeeeecCC
Confidence 999999999999999975 5567777888889999999999999999999999999999999998
Q ss_pred C-------CCcchHHHHHHHHHHHHHHHHHHHHH----HHH---HHhcCCC-----CChhhhhHHHHHHHHHHHHHHHHH
Q 019707 230 P-------LGEFQFIQGKTADMYTALQSSRSYVY----SVA---RDCDNGK-----VDPKDCAGVILCAAERATQVTLQA 290 (337)
Q Consensus 230 ~-------~~~~~~vq~~la~~~~~~~~~~a~~~----~a~---~~~~~~~-----~~~~~~~~~k~~~~~~~~~~~~~~ 290 (337)
| |.++|.+|++|+++.+..++.+.... ... +.++++. +....++++|.++++.+.++++.|
T Consensus 320 ~~~~~e~~I~~~q~~q~rL~~~la~~~a~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~aa~~K~~~t~~a~~~~~~~ 399 (610)
T cd01150 320 KPSDPEVQILDYQLQQYRLFPQLAAAYAFHFAAKSLVEMYHEIIKELLQGNSELLAELHALSAGLKAVATWTAAQGIQEC 399 (610)
T ss_pred CCCCCcchhhccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8 99999999999999999987764333 222 2333331 234578899999999999999999
Q ss_pred HHhhCCCcccCcchHHHHHHhhccCcccCChHHHHHHHHHHHHHhc
Q 019707 291 IQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRALLKQ 336 (337)
Q Consensus 291 ~~~~G~~~~~~~~~~~r~~rd~~~~~~~~g~~~~~~~~l~~~~~~~ 336 (337)
+++|||+||+.++++++++||++...+++|++++++.+++|.++++
T Consensus 400 rq~~GG~Gy~~~~~l~~l~~d~~~~~t~EG~n~vl~~~iar~ll~~ 445 (610)
T cd01150 400 REACGGHGYLAMNRLPTLRDDNDPFCTYEGDNTVLLQQTANYLLKK 445 (610)
T ss_pred HHHhcCccchhhcChHHHHhhccceeeeecchHhHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998875
No 37
>PTZ00457 acyl-CoA dehydrogenase; Provisional
Probab=100.00 E-value=3.5e-48 Score=361.86 Aligned_cols=291 Identities=27% Similarity=0.320 Sum_probs=262.3
Q ss_pred Cccc-cccCCCCCccCCCCCCCHHHHHHHHHHHHhccCchhhHhhhhhhhHHHHHHhcCCHHHHhhhchhhhcCcceeEE
Q 019707 1 MGNF-NLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGAL 79 (337)
Q Consensus 1 l~~~-Gl~~l~~p~~~GG~~~~~~~~~~~~e~la~~~~~~a~~~~~~~~~~~~~l~~~g~~~~~~~~l~~i~~g~~~~~~ 79 (337)
|+++ ||+++.+|++|||.|++..+.+.++|++++.+++.++.+..|..++...+..+|+++||++|||++.+|+.++++
T Consensus 59 ~~~l~Gl~gl~vPeeyGG~Gl~~~~~a~v~Eelgr~~~s~~l~~~~h~~l~~~~L~~~Gt~eqker~Lp~lasGe~i~A~ 138 (520)
T PTZ00457 59 DKILGNLYGARIATEYGGLGLGHTAHALIYEEVGTNCDSKLLSTIQHSGFCTYLLSTVGSKELKGKYLTAMSDGTIMMGW 138 (520)
T ss_pred hHhcCCccCCCCChhhCCCCCCHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCcEEEE
Confidence 4678 999999999999999999999999999999887776655566546667888899999999999999999999999
Q ss_pred EecCCCCCCCcCCcEeEEEEe-CCeEEEeeeeEeeeCCCCCCEEEEEEEeCC----CCC---CCCeEEEEEeCCCCCeee
Q 019707 80 AMSEPNAGSDVVGMKCKADRV-DGGYIINGNKMWCTNGPVAQTLVVYAKTDI----KAG---SKGITAFIIEKGMPGFST 151 (337)
Q Consensus 80 ~~te~~~gs~~~~~~~~a~~~-~~g~~l~G~k~~~s~~~~ad~~lv~a~~~~----~~~---~~~~~~flvp~~~~Gv~~ 151 (337)
+++| ..|||.....|+++++ +|+|+|||+|.|+ ++..||+++|+|++++ +++ .+++++|+||++.|||++
T Consensus 139 AltE-~aGSD~a~i~TtA~~~~gg~wvLNG~K~~t-~g~~Ad~~lV~Art~~~~~~~~g~~~~~git~FlV~~dapGVtv 216 (520)
T PTZ00457 139 ATEE-GCGSDISMNTTKASLTDDGSYVLTGQKRCE-FAASATHFLVLAKTLTQTAAEEGATEVSRNSFFICAKDAKGVSV 216 (520)
T ss_pred EeCC-CCCCccccceeEEEEcCCCeEEEEEEEEEE-cCchhcEEEEEeecCCcccccccccCcCceEEEEEECCCCceEE
Confidence 9988 8899999999999986 4579999999966 8999999999999853 112 257899999999999998
Q ss_pred ccccccccCCCCcceeEEEceeeeCCCCcccCCCchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCC
Q 019707 152 AQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPL 231 (337)
Q Consensus 152 ~~~~~~~g~~~~~~~~v~f~~v~Vp~~~vl~~~~~g~~~~~~~~~~~~~~~~a~~~G~~~~al~~a~~~~~~r~~~g~~~ 231 (337)
.. ++|.|||| |.+++||.++.|+......+..+|+.+++.++|+++.+++.+++|++
T Consensus 217 ~~------------~eV~FddV--P~~~vLG~~g~G~~~a~~~L~~~Rl~~aA~~vGia~~ale~av~ya~--------- 273 (520)
T PTZ00457 217 NG------------DSVVFENT--PAADVVGVVGEGFKDAMITLFTEQYLYAASLLGIMKRVVQELRGSNA--------- 273 (520)
T ss_pred ec------------CEEEECCC--CHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
Confidence 52 58999997 99999999999998888889999999999999999999999999987
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCChhhhhHHHHHHH---HHHHHHHHHHHHhhCCCcccCcchHHH
Q 019707 232 GEFQFIQGKTADMYTALQSSRSYVYSVARDCDNG-KVDPKDCAGVILCAA---ERATQVTLQAIQCLGGNGYVNEYATGR 307 (337)
Q Consensus 232 ~~~~~vq~~la~~~~~~~~~~a~~~~a~~~~~~~-~~~~~~~~~~k~~~~---~~~~~~~~~~~~~~G~~~~~~~~~~~r 307 (337)
+|.+|++|++|...++++|+++|.+++.+|++ .+...+++++|+|++ +.++.++++++| ++.|+||
T Consensus 274 --~QaVq~~LAdma~~ieAarsl~y~AA~~~D~g~~d~~~eAa~ak~~~s~~~e~~~~~~~~~~~--------~~~~~E~ 343 (520)
T PTZ00457 274 --EEGATDTVASFACAMYAMESTLYALTANLDLPTEDSLLECTLVSAFVQSTTNQLLSILETATP--------PSTTLEK 343 (520)
T ss_pred --hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHhhhhHHHHHHHhhhhcc--------CCccHHH
Confidence 47999999999999999999999999999987 456889999999999 888888888877 8999999
Q ss_pred HHHhhccCcccCChHHHHH
Q 019707 308 LLRDAKLYEIGAGTSEIRR 326 (337)
Q Consensus 308 ~~rd~~~~~~~~g~~~~~~ 326 (337)
++||++.+.+++|++++++
T Consensus 344 ~~rd~ri~~i~egs~~~l~ 362 (520)
T PTZ00457 344 CFANARLFLSMMESRDFLY 362 (520)
T ss_pred HHHHHHHHHHhhhHHHHHH
Confidence 9999999999999999988
No 38
>KOG0138 consensus Glutaryl-CoA dehydrogenase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.4e-47 Score=319.58 Aligned_cols=328 Identities=32% Similarity=0.506 Sum_probs=303.4
Q ss_pred cccccCCCCCccCCCCCCCHHHHHHHHHHHHhccCchhhHhhhhhhhHHHHHHhcCCHHHHhhhchhhhcCcceeEEEec
Q 019707 3 NFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMS 82 (337)
Q Consensus 3 ~~Gl~~l~~p~~~GG~~~~~~~~~~~~e~la~~~~~~a~~~~~~~~~~~~~l~~~g~~~~~~~~l~~i~~g~~~~~~~~t 82 (337)
..|+++-++ +-||=.|++......+-+++.+.|.+.-..+..|++++...|-.+|+++||++|||.+++|+.++||++|
T Consensus 97 smGvlG~ti-kGYGCaG~S~vaygl~~rEveRVDs~yrs~~sVqsSL~m~~Iy~~GSE~QkqkYlPslA~g~~igcfgLT 175 (432)
T KOG0138|consen 97 SMGVLGPTI-KGYGCAGVSSVAYGLLAREVERVDSGYRSAMSVQSSLVMGPIYAYGSEEQKQKYLPSLAKGKLIGCFGLT 175 (432)
T ss_pred ccccccCcc-cCcCCCchHHHHHHHHHHHHHHhhhhchhhhhhhhhhhhhhHhhcCCHHHHhhhhhhhhcCceeeEEecc
Confidence 445555555 3577788899999999999999999988888888889999999999999999999999999999999999
Q ss_pred CCCCCCCcCCcEeEEEEeCCe--EEEeeeeEeeeCCCCCCEEEEEEEeCCCCCCCCeEEEEEeCCCCCeeeccccccccC
Q 019707 83 EPNAGSDVVGMKCKADRVDGG--YIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGM 160 (337)
Q Consensus 83 e~~~gs~~~~~~~~a~~~~~g--~~l~G~k~~~s~~~~ad~~lv~a~~~~~~~~~~~~~flvp~~~~Gv~~~~~~~~~g~ 160 (337)
||.+|||+....|+|+.++.+ |.|||.|.|++|++.||.++|.||...+ +.+.=|+|+++.+|++.....+++++
T Consensus 176 EPn~GSdpsgmeT~At~~e~~ktyklNGsKtWI~nsp~aDl~vvwAr~~t~---n~I~GFi~~k~~~GL~apkI~gK~sL 252 (432)
T KOG0138|consen 176 EPNHGSDPSGMETRATYDESNKTYKLNGSKTWITNSPMADLFVVWARCETD---NKIRGFILEKGMRGLSAPKIEGKFSL 252 (432)
T ss_pred CCCCCCCcccccceeEEccCCceEEECCeeeeecCCcccceEEEEEecccC---CceeeEEEecCCCCCcCCCcCCeeee
Confidence 999999999999999999998 9999999999999999999999998743 56778999999999998888899999
Q ss_pred CCCcceeEEEceeeeCCCCcccCCCchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcchHHHHH
Q 019707 161 RGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGK 240 (337)
Q Consensus 161 ~~~~~~~v~f~~v~Vp~~~vl~~~~~g~~~~~~~~~~~~~~~~a~~~G~~~~al~~a~~~~~~r~~~g~~~~~~~~vq~~ 240 (337)
|.+.++.+-+|||+||+|++|.... ++.--...+.-.|++.+-..+|+.+.+++.+.+|...|.|||.|++.+|.+|.+
T Consensus 253 Ras~tG~Ilmd~V~VPeE~~LPg~~-s~qgpf~cLnnaR~giAWg~lGase~c~~~arqY~ldRkQFG~PLAanQL~Q~K 331 (432)
T KOG0138|consen 253 RASATGMILMDGVEVPEENLLPGAS-SLQGPFGCLNNARYGIAWGALGASEFCLHTARQYTLDRKQFGRPLAANQLIQKK 331 (432)
T ss_pred eecccCceeecCCcCChhhcCCCcc-ccCCchhhhhhhhhheeehhchhHHHHHHHHHHHHHHHHHhCCchhHHHHHHHH
Confidence 9999999999999999999996543 233345667888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCChhhhhHHHHHHHHHHHHHHHHHHHhhCCCcccCcchHHHHHHhhccCcccCC
Q 019707 241 TADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAG 320 (337)
Q Consensus 241 la~~~~~~~~~~a~~~~a~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~r~~rd~~~~~~~~g 320 (337)
|++|..++...-.++.+..+.-|.++.....++..|.+.+..+.++++.+.+++||.|+..++-..|-+-|+.....++|
T Consensus 332 ladmltei~lgl~~clrl~rLkd~g~~tp~qiSl~Krn~~gKaleiAr~~RdmLGgNGI~deyhv~rh~~nLE~vnTYEG 411 (432)
T KOG0138|consen 332 LADMLTEITLGLQACLRLGRLKDQGKATPEQISLLKRNNCGKALEIARQARDMLGGNGISDEYHVIRHAMNLEAVNTYEG 411 (432)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhcccCChhhhHHHhhccchhHHHHHHHHHHHhcCCcchhHHHHHHHHcCccceecccc
Confidence 99999999999999999999999998888999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHh
Q 019707 321 TSEIRRMIIGRALLK 335 (337)
Q Consensus 321 ~~~~~~~~l~~~~~~ 335 (337)
+-+++...++|.+.+
T Consensus 412 ThDihaLilGRaiTG 426 (432)
T KOG0138|consen 412 THDIHALILGRAITG 426 (432)
T ss_pred cchHHHHhhhhhhhh
Confidence 999999999998865
No 39
>PLN02443 acyl-coenzyme A oxidase
Probab=100.00 E-value=2.5e-45 Score=353.72 Aligned_cols=295 Identities=20% Similarity=0.258 Sum_probs=257.6
Q ss_pred HhhhhhhhHHHHHHhcCCHHHHhhhchhhhcCcceeEEEecCCCCCCCcCCcEeEEEEe--CCeEEEe-----eeeEeee
Q 019707 42 SYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRV--DGGYIIN-----GNKMWCT 114 (337)
Q Consensus 42 ~~~~~~~~~~~~l~~~g~~~~~~~~l~~i~~g~~~~~~~~te~~~gs~~~~~~~~a~~~--~~g~~l~-----G~k~~~s 114 (337)
.+..|.++....|..+|+++|+++|+|++.+|+.++|+++|||++|||+...+|+|+.+ +++|+|| |.|+|++
T Consensus 98 ~~~~~~~~f~~~I~~~GT~eQk~~~L~~~~~g~iig~fA~TE~ghGSdv~~leTtAt~d~~~~efvIntP~~~g~K~wig 177 (664)
T PLN02443 98 YTDLHWGMFVPAIKGQGTEEQQKKWLPLAYKMQIIGCYAQTELGHGSNVQGLETTATFDPKTDEFVIHSPTLTSSKWWPG 177 (664)
T ss_pred eeeehHhHHHHHHHHhCCHHHHHHHHHHHhCCChheEEEecCCCcccchhhCeEEEEEeCCCCEEEECCCCCCEEEEeec
Confidence 34566657778899999999999999999999999999999999999999999999988 5789998 9999999
Q ss_pred CC-CCCCEEEEEEEeCCCCCCCCeEEEEEeCC-------CCCeeecccccccc---CCCCcceeEEEceeeeCCCCcccC
Q 019707 115 NG-PVAQTLVVYAKTDIKAGSKGITAFIIEKG-------MPGFSTAQKLDKLG---MRGSDTCELVFENCFVPNENVLGQ 183 (337)
Q Consensus 115 ~~-~~ad~~lv~a~~~~~~~~~~~~~flvp~~-------~~Gv~~~~~~~~~g---~~~~~~~~v~f~~v~Vp~~~vl~~ 183 (337)
++ ..||+++|+|++..+++..++++|+||.+ .|||++.+.++++| +++.+++.+.|+||+||.+++|+.
T Consensus 178 ~~~~~A~~~vV~Arl~~~~~~~Gv~~FlVp~r~~~~~~~~PGV~vgd~g~K~G~~~~~~~dng~l~Fd~VrVP~~nlLg~ 257 (664)
T PLN02443 178 GLGKVSTHAVVYARLITNGKDHGIHGFIVQLRSLDDHSPLPGVTVGDIGMKFGNGAYNTMDNGFLRFDHVRIPRDQMLMR 257 (664)
T ss_pred CCcccCCEEEEEEEECCCCCCCCeEEEEEecCCcCcCCCCCCeEEeccccccCcccCCCCcceEEEeCcEEECHHHcCCc
Confidence 97 68999999999865545678999999986 79999999999999 566889999999999999999975
Q ss_pred CC----chH--------HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCC--cchH-----HHHHHHHH
Q 019707 184 EG----KGV--------YVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLG--EFQF-----IQGKTADM 244 (337)
Q Consensus 184 ~~----~g~--------~~~~~~~~~~~~~~~a~~~G~~~~al~~a~~~~~~r~~~g~~~~--~~~~-----vq~~la~~ 244 (337)
.+ .|. ......+..+|+..++.++|.++.+++.+++|+.+|.+||.|+. ++|. +|++|+++
T Consensus 258 ~~~v~~~G~~~~~~~~~~~~~~~l~~~R~~i~a~a~g~~~~Al~iAvrYa~~R~QFg~~~~~~e~qii~y~~~Q~rL~~~ 337 (664)
T PLN02443 258 LSKVTREGKYVQSDVPRQLVYGTMVYVRQTIVADASTALSRAVCIATRYSAVRRQFGSQDGGPETQVIDYKTQQSRLFPL 337 (664)
T ss_pred ccccCCCCceecccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccEeCCCCCCccchhhhhhHHHHHHHHHH
Confidence 32 121 23334567789999999999999999999999999999998876 4444 59999999
Q ss_pred HHHHHHHHHHHHHHHHHhcC------CCC------ChhhhhHHHHHHHHHHHHHHHHHHHhhCCCcccCcchHHHHHHhh
Q 019707 245 YTALQSSRSYVYSVARDCDN------GKV------DPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDA 312 (337)
Q Consensus 245 ~~~~~~~~a~~~~a~~~~~~------~~~------~~~~~~~~k~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~r~~rd~ 312 (337)
.+.+++++.+.+.+++..++ ..+ ....++++|.++++.+.++++.|+++|||+||+.++++++++||+
T Consensus 338 la~~~a~r~~~~~a~~~~~~~~~~~~~~~~~~~~e~h~~aa~~Ka~~t~~a~~~i~~~rq~cGG~Gy~~~~~l~~l~~d~ 417 (664)
T PLN02443 338 LASAYAFRFVGEWLKWLYTDVTQRLEANDFSTLPEAHACTAGLKSLTTSATADGIEECRKLCGGHGYLCSSGLPELFAVY 417 (664)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccccccCcHHHHHhhh
Confidence 99999999999988876653 111 123478999999999999999999999999999999999999999
Q ss_pred ccCcccCChHHHHHHHHHHHHHhc
Q 019707 313 KLYEIGAGTSEIRRMIIGRALLKQ 336 (337)
Q Consensus 313 ~~~~~~~g~~~~~~~~l~~~~~~~ 336 (337)
....+++|++++++.+++|.++++
T Consensus 418 ~~~~t~EGdn~Vl~~~iar~ll~~ 441 (664)
T PLN02443 418 VPACTYEGDNVVLLLQVARFLMKT 441 (664)
T ss_pred hcceeecCcHHHHHHHHHHHHHHH
Confidence 999999999999999999988764
No 40
>KOG1469 consensus Predicted acyl-CoA dehydrogenase [General function prediction only]
Probab=100.00 E-value=8.9e-47 Score=310.35 Aligned_cols=334 Identities=25% Similarity=0.354 Sum_probs=299.8
Q ss_pred ccccccCCCCCccCC--CCCCCHHHHHHHHHHHHhcc-CchhhHhhhhhhhHHHHHHhcCCHHHHhhhchhhhcCcceeE
Q 019707 2 GNFNLHGITAPQEYG--GLGLGYLYHCIAMEEISRAS-GSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGA 78 (337)
Q Consensus 2 ~~~Gl~~l~~p~~~G--G~~~~~~~~~~~~e~la~~~-~~~a~~~~~~~~~~~~~l~~~g~~~~~~~~l~~i~~g~~~~~ 78 (337)
+.+|||.|++|...- |.|++..+++.++|.+++.- .+--+............|.+||+++||.+||-+++.|+...|
T Consensus 37 K~eGlWNLFlp~~~qkyg~GLtnveYa~icElmGrs~~APeVfNC~APDTGNMEvl~rYGseeQks~WL~PLLeG~irSc 116 (392)
T KOG1469|consen 37 KVEGLWNLFLPAVSQKYGAGLTNVEYAHICELMGRSFFAPEVFNCQAPDTGNMEVLHRYGSEEQKSQWLIPLLEGNIRSC 116 (392)
T ss_pred HhcchHHhhhHHHHHhhccCccchhHHHHHHHhccccccchhccCCCCCCCCeeehhhhCCHHHHhhHhHHHhcCCceee
Confidence 357999999998653 78999999999999999853 222222233333567889999999999999999999999999
Q ss_pred EEecCCC-CCCCcCCcEeEEEEeCCeEEEeeeeEeeeCC--CCCCEEEEEEEeCCC--CCCCCeEEEEEeCCCCCeeecc
Q 019707 79 LAMSEPN-AGSDVVGMKCKADRVDGGYIINGNKMWCTNG--PVAQTLVVYAKTDIK--AGSKGITAFIIEKGMPGFSTAQ 153 (337)
Q Consensus 79 ~~~te~~-~gs~~~~~~~~a~~~~~g~~l~G~k~~~s~~--~~ad~~lv~a~~~~~--~~~~~~~~flvp~~~~Gv~~~~ 153 (337)
+++|||+ ..||..|.++..+++++.|++||.|||+||+ +.+.+.+++.+++.. +.+...++.+||+++|||+++.
T Consensus 117 FaMTEP~VASSDATNIe~SI~r~~~~YvINg~KWw~sga~~PkCrv~i~mGkt~~~~~~rhkQqSmiLVpM~TpGvkiiR 196 (392)
T KOG1469|consen 117 FAMTEPDVASSDATNIECSIRRDGDSYVINGKKWWISGAGDPKCRIAIFMGKTDNTSASRHKQQSMILVPMNTPGVKIIR 196 (392)
T ss_pred EeecCCcccccccccceEEEEEcCCEEEEecceeeecCCCCCceEEEEEecccCCCccchhhcccEEEEecCCCCeeEee
Confidence 9999999 6799999999999999999999999999997 558899999988765 4466789999999999999999
Q ss_pred ccccccCCCCcc--eeEEEceeeeCCCCcccCCCchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCC
Q 019707 154 KLDKLGMRGSDT--CELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPL 231 (337)
Q Consensus 154 ~~~~~g~~~~~~--~~v~f~~v~Vp~~~vl~~~~~g~~~~~~~~~~~~~~~~a~~~G~~~~al~~a~~~~~~r~~~g~~~ 231 (337)
+...+|....+. .++.|+||+||..+++-.++.|+...+..+..+|+++|.-.+|.++++++...+.+..|..||+++
T Consensus 197 pltVfG~~DapgGH~Ei~F~~VrVP~~NmlLGeGrGFEIaQGRLGPGRiHHcMRliG~aERal~lm~~R~~sRiaFgk~l 276 (392)
T KOG1469|consen 197 PLTVFGYTDAPGGHFEIHFENVRVPATNMLLGEGRGFEIAQGRLGPGRIHHCMRLIGLAERALQLMKERALSRIAFGKKL 276 (392)
T ss_pred eeeeeccccCCCCcceEEEEEEEeeccceeecCCCcceeeccccCCcHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcchh
Confidence 999999887764 579999999999999888889999999999999999999999999999999999999999999999
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCChhhhhHHHHHHHHHHHHHHHHHHHhhCCCcccCcchHHHHH
Q 019707 232 GEFQFIQGKTADMYTALQSSRSYVYSVARDCDNG--KVDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLL 309 (337)
Q Consensus 232 ~~~~~vq~~la~~~~~~~~~~a~~~~a~~~~~~~--~~~~~~~~~~k~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~r~~ 309 (337)
.++..+.+.|++...++|.+|.++.++++.+|.- +....+.+|+|+.+...+.++.+.++|++||.|...+.|+.++|
T Consensus 277 ~q~~s~~~diA~sRveiEqaRLLvLkAAh~mD~~G~k~Ak~~iAMiKv~AP~ma~kilD~AiQ~~G~aG~s~~~~la~l~ 356 (392)
T KOG1469|consen 277 VQHGSVAHDIAESRVEIEQARLLVLKAAHSMDTLGNKGAKKEIAMIKVAAPNMASKILDRAIQVQGGAGVSSDTPLANLY 356 (392)
T ss_pred hhcchHHHHHHHHHhHhhhhhhhhhhhhhhhhhhcchhhhhheeeeeecCcHHHHHHHHHHHHHhcCCCCCCCceeeEEE
Confidence 9999999999999999999999999999999864 34567899999999999999999999999999999999999999
Q ss_pred HhhccCcccCChHHHHHHHHHHHHHh
Q 019707 310 RDAKLYEIGAGTSEIRRMIIGRALLK 335 (337)
Q Consensus 310 rd~~~~~~~~g~~~~~~~~l~~~~~~ 335 (337)
..+++..+.+|+.+++...+++.-++
T Consensus 357 ~~~r~lriadgPd~vhL~ai~~le~~ 382 (392)
T KOG1469|consen 357 AIARVLRIADGPDEVHLSAIAKLELR 382 (392)
T ss_pred EEeeeEEeccCCCccchhhhhhhhHH
Confidence 99999999999999999998876554
No 41
>KOG0135 consensus Pristanoyl-CoA/acyl-CoA oxidase [Lipid transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=6.7e-34 Score=255.14 Aligned_cols=316 Identities=24% Similarity=0.317 Sum_probs=276.1
Q ss_pred CHHHHHHHHHHHHhccCchhhHhhhhhhhHHHHHHhcCCHHHHhhhchhhhcCcceeEEEecCCCCCCCcCCcEeEEEEe
Q 019707 21 GYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRV 100 (337)
Q Consensus 21 ~~~~~~~~~e~la~~~~~~a~~~~~~~~~~~~~l~~~g~~~~~~~~l~~i~~g~~~~~~~~te~~~gs~~~~~~~~a~~~ 100 (337)
+......++|.++.+|.|++.-+..|..+....+..+|++..++ |+.++-.-+..+|+++||.++|||...++|+|+.+
T Consensus 103 ~~~k~~al~E~lg~yd~sls~K~~lh~~lfg~AV~~~GT~rH~~-yi~~~~n~ev~gcfamTEl~HGSNt~~I~TtatyD 181 (661)
T KOG0135|consen 103 AELKKFALTEALGIYDQSLSAKLGLHFLLFGNAVKSMGTKRHHD-YIQKTENYEVKGCFAMTELGHGSNTKGIQTTATYD 181 (661)
T ss_pred HHHHHHHHHHHHhhcCcchhhhhhhhhhhhhHHHHhhccHHHHH-HHhhhhcceeeeeEEEeeecCCccccceeeeeeec
Confidence 34467889999999999999999999989999999999999988 99999999999999999999999999999999988
Q ss_pred --CCeEEEe-----eeeEeeeC-CCCCCEEEEEEEeCCCCCCCCeEEEEEeCCC-------CCeeeccccccccCCCCcc
Q 019707 101 --DGGYIIN-----GNKMWCTN-GPVAQTLVVYAKTDIKAGSKGITAFIIEKGM-------PGFSTAQKLDKLGMRGSDT 165 (337)
Q Consensus 101 --~~g~~l~-----G~k~~~s~-~~~ad~~lv~a~~~~~~~~~~~~~flvp~~~-------~Gv~~~~~~~~~g~~~~~~ 165 (337)
.+.|++| ..|.|+.| +.+|++.+|++++..+....++..|+||.++ |||+|.+.-.+.|++|.++
T Consensus 182 P~t~EfVinTP~~~A~K~WiGn~a~~athavvfa~L~~~g~n~G~H~FiiqIRdpkT~~t~PgV~igD~G~K~GlnGVDN 261 (661)
T KOG0135|consen 182 PTTEEFVINTPDFSAIKCWIGNAAKHATHAVVFAQLHVPGQNHGLHGFIIQIRDPKTLQTLPGVRIGDCGHKIGLNGVDN 261 (661)
T ss_pred CCCCeeEecCCcHHHHHHHhccccccceEEEEEEEeeecCccCceeeEEEEeecccccCCCCCceecccccccccccccC
Confidence 5789999 67999999 5779999999999777677899999999764 8999999999999999999
Q ss_pred eeEEEceeeeCCCCcccCC----------------CchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC
Q 019707 166 CELVFENCFVPNENVLGQE----------------GKGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGR 229 (337)
Q Consensus 166 ~~v~f~~v~Vp~~~vl~~~----------------~~g~~~~~~~~~~~~~~~~a~~~G~~~~al~~a~~~~~~r~~~g~ 229 (337)
+-+.|+||+||.+++|-.. ++-+-.....+..+|+..+..++|.++-++.+|++|+..|+|||.
T Consensus 262 G~l~F~nvRIPRenLLNr~gDVtpDG~YvSs~k~~~qrfgA~L~~Ls~GRvgIa~~ai~~lkla~tIAIRYS~sRRQFGP 341 (661)
T KOG0135|consen 262 GFLWFDNVRIPRENLLNRFGDVTPDGKYVSSFKDPSQRFGASLGSLSSGRVGIASSAIGALKLALTIAIRYSLSRRQFGP 341 (661)
T ss_pred ceEEEecccCchHHHhhhccCcCCCCeeeccCCChhhhhchhhcccccchhHHHHHHHHHHHHHHHHhhhhHHhHhhhCC
Confidence 9999999999999998321 111222445567899999999999999999999999999999984
Q ss_pred -------CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----------CCChhhhhHHHHHHHHHHHHHHHHHHH
Q 019707 230 -------PLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNG----------KVDPKDCAGVILCAAERATQVTLQAIQ 292 (337)
Q Consensus 230 -------~~~~~~~vq~~la~~~~~~~~~~a~~~~a~~~~~~~----------~~~~~~~~~~k~~~~~~~~~~~~~~~~ 292 (337)
||.++|..|.+|-.+.+...+.+-..........+. ++....++-.|.+++-...++.++|.+
T Consensus 342 ~~~geEv~iLeYp~qQ~RL~P~LAaaya~~fas~~l~~~y~E~~~~~~~~~n~keiHALsSg~K~~~TW~~~~~LqecRE 421 (661)
T KOG0135|consen 342 TKNGEEVPILEYPSQQYRLLPYLAAAYALSFASKYLVMIYVERTPRTNEGVNSKEIHALSSGLKPVATWHNMRALQECRE 421 (661)
T ss_pred CCCCCcceeeechhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHhccchhhhHhhHHHHHHHHH
Confidence 689999999999888888777766655544333221 233456777899999999999999999
Q ss_pred hhCCCcccCcchHHHHHHhhccCcccCChHHHHHHHHHHHHHhcC
Q 019707 293 CLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRALLKQQ 337 (337)
Q Consensus 293 ~~G~~~~~~~~~~~r~~rd~~~~~~~~g~~~~~~~~l~~~~~~~~ 337 (337)
.|||+||...+.+..+--|--.+.+++|.|.++.++.++.+++++
T Consensus 422 AcGGhGYl~~nRlg~Lr~D~D~~~TfEGDNnVLlQqvsn~LL~~y 466 (661)
T KOG0135|consen 422 ACGGHGYLQENRLGQLRDDHDPFQTFEGDNNVLLQQVSNALLAQY 466 (661)
T ss_pred HhccchHHHHHHhcccccCCCccceeecCceeHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999874
No 42
>TIGR02309 HpaB-1 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component. This gene for this monooxygenase is found within apparent operons for the degradation of 4-hydroxyphenylacetic acid in Deinococcus, Thermus and Oceanobacillus. Phylogenetic trees support inclusion of the Bacillus halodurans sequence above trusted although the complete 4-hydroxyphenylacetic acid degradation pathway may not exist in that organism. Generally, this enzyme acts with the assistance of a small flavin reductase domain protein (HpaC) to provide the cycle the flavin reductant for the reaction. This family of sequences is a member of a larger subfamily of monooxygenases (pfam03241).
Probab=99.97 E-value=2.5e-29 Score=234.54 Aligned_cols=270 Identities=17% Similarity=0.197 Sum_probs=212.7
Q ss_pred HHHHHHHHHHHhccCc-hhhHhhhhhh-------hHHHHHHhcCCH--HHHhhhchhhhcCcceeEEEecCCCCC-----
Q 019707 23 LYHCIAMEEISRASGS-VGLSYGAHSN-------LCINQLVRHGSP--AQKDKYLPKLISGEHVGALAMSEPNAG----- 87 (337)
Q Consensus 23 ~~~~~~~e~la~~~~~-~a~~~~~~~~-------~~~~~l~~~g~~--~~~~~~l~~i~~g~~~~~~~~te~~~g----- 87 (337)
...-+.++.+++.... .+.+ .-+.+ ....++..++++ +-..+|+..+...++..+.++++|...
T Consensus 80 ~~r~~~~~~~~~~~~g~~gR~-pD~~n~~~~~~~~~~~~~~~~~~~y~~n~~~y~~~~~~~dl~~~~a~~dp~~dRs~~~ 158 (477)
T TIGR02309 80 KRRGEAYKLWADQNLGMMGRS-PDYLNAVVMAYAASADYFGKSNSEFAENVRNYYEYLRDNDLALTHALTNPQVNRAKPP 158 (477)
T ss_pred HHHHHHHHHHHHHcCCeeecC-hHHHHHHHHHHHhhHHHHhhcCcHHHHHHHHHHHHHHHhCceeeccccCCCCCCCCCh
Confidence 3445777788776432 2222 11111 122233445444 345788999999999999999999732
Q ss_pred ---CCcCCcEeEEEEeCCeEEEeeeeEeeeCCCCCCEEEEEEEeCCCCC---CCCeEEEEEeCCCCCeeeccccccccCC
Q 019707 88 ---SDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAG---SKGITAFIIEKGMPGFSTAQKLDKLGMR 161 (337)
Q Consensus 88 ---s~~~~~~~~a~~~~~g~~l~G~k~~~s~~~~ad~~lv~a~~~~~~~---~~~~~~flvp~~~~Gv~~~~~~~~~g~~ 161 (337)
.|+.-..-..+++++||+|||.|.|+|++ .||+++|++++...++ .+..+.|+||.++|||++....+.+|.+
T Consensus 159 ~~~~d~~~~~~Vve~~~dGiVV~GaK~~~T~~-~ad~~~V~~~~~~~~~~~~~~ya~~F~VP~dtpGl~~i~r~~~~~~~ 237 (477)
T TIGR02309 159 SEQPDPYIALGVVEQTDKGVIVRGARMTATFP-IADEILIFPSTVLKAGAEKDPYALAFAIPTNTPGLHFVCREALDGGD 237 (477)
T ss_pred hhcCCCCcceeEEEEcCCCEEEeCHHHhhhhc-ccceEEEeccCCCCCccCCCCeEEEEEeeCCCCceEEEeCCccCCCC
Confidence 12222234457888999999999999996 9999999998865433 2247999999999999999999888888
Q ss_pred CC-----------cceeEEEceeeeCCCCc--ccCC---CchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 019707 162 GS-----------DTCELVFENCFVPNENV--LGQE---GKGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQRE 225 (337)
Q Consensus 162 ~~-----------~~~~v~f~~v~Vp~~~v--l~~~---~~g~~~~~~~~~~~~~~~~a~~~G~~~~al~~a~~~~~~r~ 225 (337)
+. ..+.|+||||+||||+| +|+. +.++.... .++..+..++|....+++.++.++.. .
T Consensus 238 ~~~D~plssrfde~da~vvFDdV~VPwe~VF~~g~~e~a~~~f~~~~-----~~~~~~~~~~g~~~~~ld~~~g~a~~-~ 311 (477)
T TIGR02309 238 SPFDHPLSSRFEEMDALVIFDDVLVPWERIFILGDVELCNNAYAATG-----AVNHMAHQVVALKIAKTEAFLGVAAL-M 311 (477)
T ss_pred CcccCccccccCCCeEEEEeCceeccHHHhhhcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 76 56899999999999999 7776 44442222 23566889999999999999999998 8
Q ss_pred hcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-----CChhhhhHHHHHHHHHHHHHHHHHHHhhCCCccc
Q 019707 226 QFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGK-----VDPKDCAGVILCAAERATQVTLQAIQCLGGNGYV 300 (337)
Q Consensus 226 ~~g~~~~~~~~vq~~la~~~~~~~~~~a~~~~a~~~~~~~~-----~~~~~~~~~k~~~~~~~~~~~~~~~~~~G~~~~~ 300 (337)
.++.++.++|+||.+|+|+...++++|++++++++..+.+. +....++++|+++++...++. .++|++||.|+.
T Consensus 312 a~~~gi~~~q~VQ~kLAEm~~~~Ea~ral~~aAa~~~~~~~~G~~~P~~~~as~aKl~~~e~~~rv~-~alq~lGG~G~~ 390 (477)
T TIGR02309 312 AEGIGADGFQHVQEKIAEIIVYLEAMKAFWTRAEEEAKENAYGLMTPDRGALDAARNLYPRLYPRLR-EILEQLGASGLI 390 (477)
T ss_pred HHhhCcccchHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCCCcccCCHHHHHHHHHHHHHHHHHHH-HHHHHHhCCcEE
Confidence 99999999999999999999999999999999999888743 567889999999999999995 999999999887
Q ss_pred C
Q 019707 301 N 301 (337)
Q Consensus 301 ~ 301 (337)
.
T Consensus 391 ~ 391 (477)
T TIGR02309 391 T 391 (477)
T ss_pred e
Confidence 3
No 43
>KOG0136 consensus Acyl-CoA oxidase [Lipid transport and metabolism]
Probab=99.93 E-value=3.2e-25 Score=203.84 Aligned_cols=303 Identities=20% Similarity=0.263 Sum_probs=243.5
Q ss_pred ccCchhhHhhhhhhhHHHHHHhcCCHHHHhhhchhhhcCcceeEEEecCCCCCCCcCCcEeEEEEeCC--eEEEe-----
Q 019707 35 ASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDG--GYIIN----- 107 (337)
Q Consensus 35 ~~~~~a~~~~~~~~~~~~~l~~~g~~~~~~~~l~~i~~g~~~~~~~~te~~~gs~~~~~~~~a~~~~~--g~~l~----- 107 (337)
..+.-+..+..|.++....|..-+++||.++|+++..+.+.++|++-||.++|++....+|+|+.+.. .|+||
T Consensus 103 ~~~~~~~pl~lH~~MFvp~l~~q~t~EQ~~~Wl~~a~~~~IiGtYAQTElGHGTnl~~LET~AtyD~~T~eFVl~TPt~t 182 (670)
T KOG0136|consen 103 VLGQEGHPLALHYGMFVPTLKGQGTDEQQEKWLSRALNMEIIGTYAQTELGHGTNLRGLETTATYDPKTQEFVLNTPTLT 182 (670)
T ss_pred ccccCCchhhhhhhhhhhHhhcCCCHHHHHHHHHhcccceEEEeehhhhhcccccccccceeeeecCCcceEEecCCCcc
Confidence 34445566778888899999999999999999999999999999999999999999999999988774 69988
Q ss_pred eeeEeeeC-CCCCCEEEEEEEeCCCCCCCCeEEEEEeCCC-------CCeeeccccccccCCCCcceeEEEceeeeCCCC
Q 019707 108 GNKMWCTN-GPVAQTLVVYAKTDIKAGSKGITAFIIEKGM-------PGFSTAQKLDKLGMRGSDTCELVFENCFVPNEN 179 (337)
Q Consensus 108 G~k~~~s~-~~~ad~~lv~a~~~~~~~~~~~~~flvp~~~-------~Gv~~~~~~~~~g~~~~~~~~v~f~~v~Vp~~~ 179 (337)
..|||..| +..++|.+|.|++-.+....++..|+||.++ |||++.+.-.++|+.+.+++-+.||||+||.++
T Consensus 183 a~KWWPGgLG~ssnhAvV~AqL~~~gk~~G~h~FiV~lRd~~th~pL~Gi~iGDIG~Kmg~ng~dNGfL~f~nvRIPR~n 262 (670)
T KOG0136|consen 183 ATKWWPGGLGKSSNHAVVVAQLITKGKCYGPHPFIVQLRDEDTHKPLPGITVGDIGPKMGFNGVDNGFLGFDNVRIPRTN 262 (670)
T ss_pred eecccCCccccccchheeeeeeeecccccccceeEEEccCccccCCCCCCeecCCCccccccCCccceeeecceeechHh
Confidence 89999999 4568899999999776677899999999864 899999999999999999999999999999999
Q ss_pred cccCC----CchH-------HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC-------CCCcchHHHHHH
Q 019707 180 VLGQE----GKGV-------YVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGR-------PLGEFQFIQGKT 241 (337)
Q Consensus 180 vl~~~----~~g~-------~~~~~~~~~~~~~~~a~~~G~~~~al~~a~~~~~~r~~~g~-------~~~~~~~vq~~l 241 (337)
+|-.. .+|. ......+-..|.....-..=.+..|..+|++|+.-|+|+.. .|.|+|+.|.+|
T Consensus 263 mLmr~~kV~~dGtyv~p~~~~l~Y~tMv~vRs~mv~d~a~~La~A~tIAtRYSaVRRQ~~i~pg~~E~qIlDyqTQQ~rl 342 (670)
T KOG0136|consen 263 MLMRHAKVEPDGTYVKPPHPKLGYGTMVYVRSLMVMDQARFLAKAATIATRYSAVRRQSEIRPGQPEVQILDYQTQQYRL 342 (670)
T ss_pred hhhhhheecCCCccccCCccccceeeeEEEeehhHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCceeeechhHHHHH
Confidence 87210 1111 11111122334444444455666778899999999998642 489999999986
Q ss_pred HHHHHHHHHHH-------HHHHHHHHHhcCCC-----CChhhhhHHHHHHHHHHHHHHHHHHHhhCCCcccCcchHHHHH
Q 019707 242 ADMYTALQSSR-------SYVYSVARDCDNGK-----VDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLL 309 (337)
Q Consensus 242 a~~~~~~~~~~-------a~~~~a~~~~~~~~-----~~~~~~~~~k~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~r~~ 309 (337)
=-..+.-.+-+ .+......+++++. +.....+-.|..++..+.+-+..|.+.|||+||..-+.+-.+|
T Consensus 343 FP~LA~ayAf~~~g~~l~~~Y~~~~~~l~~g~~s~LpeLHaLS~gLKa~~T~~~~~GIE~~R~aCGGHGYs~~Sglp~iY 422 (670)
T KOG0136|consen 343 FPQLARAYAFRFVGEELWELYEDVLKELENGNFSRLPELHALSAGLKAVVTWDTAQGIEQCRLACGGHGYSQASGLPEIY 422 (670)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhchHHHHHHhhhHHHhhhhhhhHHHHHHHhcCCccchhhcCCccce
Confidence 55444433332 22344455555543 2345566789999999999999999999999999999999999
Q ss_pred HhhccCcccCChHHHHHHHHHHHHHhcC
Q 019707 310 RDAKLYEIGAGTSEIRRMIIGRALLKQQ 337 (337)
Q Consensus 310 rd~~~~~~~~g~~~~~~~~l~~~~~~~~ 337 (337)
-.+-..-+++|.|-++..+++|.|+|++
T Consensus 423 ~~~v~~CTYEGEN~VmlLQ~ARfLmKs~ 450 (670)
T KOG0136|consen 423 GVAVGACTYEGENTVLLLQVARFLVKSY 450 (670)
T ss_pred eeeeeeeeeeccceeehHHHHHHHHHHH
Confidence 9999999999999999999999999863
No 44
>PF00441 Acyl-CoA_dh_1: Acyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR006090 Mammalian Co-A dehydrogenases (1.3.99.3 from EC) are enzymes that catalyse the first step in each cycle of beta-oxidation in mitochondion. Acyl-CoA dehydrogenases [, , ] catalyze the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with concommitant reduction of enzyme-bound FAD. Reoxidation of the flavin involves transfer of electrons to ETF (electron transfering flavoprotein). These enzymes are homodimers containing one molecule of FAD. The monomeric enzyme is folded into three domains of approximately equal size. The N-terminal and the C-terminal are mainly alpha-helices packed together, and the middle domain consists of two orthogonal beta-sheets. The flavin ring is buried in the crevise between two alpha-helical domains and the beta-sheet of one subunit, and the adenosine pyrophosphate moiety is stretched into the subunit junction with one formed by two C-terminal domains []. The C-terminal domain of Acyl-CoA dehydrogenase is an all-alpha, four helical up-and-down bundle.; GO: 0016627 oxidoreductase activity, acting on the CH-CH group of donors, 0055114 oxidation-reduction process; PDB: 2EBA_A 1RX0_C 1R2J_A 2OKU_A 3MKH_C 2JIF_C 3GQT_D 3EON_D 3EOM_C 3D6B_A ....
Probab=99.91 E-value=3.1e-23 Score=166.45 Aligned_cols=150 Identities=40% Similarity=0.618 Sum_probs=145.9
Q ss_pred CchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 019707 185 GKGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDN 264 (337)
Q Consensus 185 ~~g~~~~~~~~~~~~~~~~a~~~G~~~~al~~a~~~~~~r~~~g~~~~~~~~vq~~la~~~~~~~~~~a~~~~a~~~~~~ 264 (337)
++||..+...+...|+..++.++|.++.+++.+.+|+++|.++|+|+.++|.++++|+++..++++++++++.++..+++
T Consensus 1 g~G~~~~~~~l~~~R~~~~~~~~g~~~~~l~~a~~~~~~r~~~g~~l~~~~~v~~~la~~~~~~~a~~~~~~~~~~~~~~ 80 (150)
T PF00441_consen 1 GQGWAVALDTLNHERLMIAAMALGIARRALDEAIEYARRRRQFGKPLAEHPAVRRRLADMAARLEAMRALVYRAARRLDA 80 (150)
T ss_dssp TBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTEETTEEGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccchhhhHHHHHhhccchhhhhcccccccccccc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhhhhHHHHHHHHHHHHHHHHHHHhhCCCcccCcchHHHHHHhhccCcccCChHHHHHHHHHHHHH
Q 019707 265 GKVDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRALL 334 (337)
Q Consensus 265 ~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~r~~rd~~~~~~~~g~~~~~~~~l~~~~~ 334 (337)
+.....+.+++|.++++.+.++++.+++++|+.|+.+++|++|++||++.+.+++|++++++..|+|++|
T Consensus 81 ~~~~~~~~a~~K~~~t~~~~~~~~~~~~l~G~~g~~~~~~l~~~~rda~~~~i~~G~~ev~~~~ia~~~l 150 (150)
T PF00441_consen 81 GQNDPVEAAIAKYFATELAQDIAEEAMQLLGGRGLTEDNPLERLYRDARAFTIYGGTNEVQRNQIARRLL 150 (150)
T ss_dssp TSSTHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGBTTSSHHHHHHHHHHGGTSTSTHHHHHHHHHHHHH
T ss_pred ccccccccchhhhhcccccccchhhhhhhhhhhhhcccCHHHHHHhhcceeeeccCCHHHHHHHHHHHhC
Confidence 8888899999999999999999999999999999999999999999999999999999999999999986
No 45
>COG2368 Aromatic ring hydroxylase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.86 E-value=5.4e-20 Score=165.32 Aligned_cols=242 Identities=17% Similarity=0.180 Sum_probs=183.5
Q ss_pred cCCH--HHHhhhchhhhcCcceeEEEecCCCCC--------CCcCCcEeEEEEeCCeEEEeeeeEeeeCCCCCCEEEEE-
Q 019707 57 HGSP--AQKDKYLPKLISGEHVGALAMSEPNAG--------SDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVY- 125 (337)
Q Consensus 57 ~g~~--~~~~~~l~~i~~g~~~~~~~~te~~~g--------s~~~~~~~~a~~~~~g~~l~G~k~~~s~~~~ad~~lv~- 125 (337)
++++ +.-.+|+..+...++..+.+++.|.-. .|+.-..-..+++++|++|+|.|..+|+++.+|..+|+
T Consensus 125 ~~~dy~~n~~~~~k~vqk~DL~~~hA~tdpk~dRsk~p~e~~dpdiyvrVvee~~dGIVVrGAK~~aT~~a~tdei~V~P 204 (493)
T COG2368 125 FGTDYHENAREYYKEVQKNDLALTHAITDPKGDRSKRPSEQKDPDIYVRVVEETEDGIVVRGAKALATGSALTDEIFVLP 204 (493)
T ss_pred ccchHHHHHHHHHHHHHhcCceeeeceecCCccCCCChhhccCCCeeEEEEEEecCceEEEChHHHhccccccceEEEee
Confidence 4444 345788999999999999999998732 22222233347788999999999999999999999999
Q ss_pred EEeCCCCCCCCeEEEEEeCCCCCeeecccccc---ccCCCCcce------------eEEEceeeeCCCCccc--CCC--c
Q 019707 126 AKTDIKAGSKGITAFIIEKGMPGFSTAQKLDK---LGMRGSDTC------------ELVFENCFVPNENVLG--QEG--K 186 (337)
Q Consensus 126 a~~~~~~~~~~~~~flvp~~~~Gv~~~~~~~~---~g~~~~~~~------------~v~f~~v~Vp~~~vl~--~~~--~ 186 (337)
.+.-..++++....|.+|.++|||+++..... -|+.+.++. -++||||+||||+||- +.. .
T Consensus 205 t~~~~~~d~dfAv~FaiP~dt~GvK~i~r~s~~~~~~~~~g~fd~plssrfde~dailVfDdVfVPWERVf~y~d~~~~~ 284 (493)
T COG2368 205 TRSMQEDDKDFAVAFAIPMDTEGVKFICRRSYELGRGAEGGPFDYPLSSRFDENDAILVFDDVFVPWERVFIYRDLERAY 284 (493)
T ss_pred ccccCCCCCceEEEEEcccCCCceEEEecCcchhhcccCCCCCCCccccccccCceEEEecccccchhheeeeccHHHHH
Confidence 44444456678889999999999999866532 222334333 3999999999999983 333 2
Q ss_pred hHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 019707 187 GVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGK 266 (337)
Q Consensus 187 g~~~~~~~~~~~~~~~~a~~~G~~~~al~~a~~~~~~r~~~g~~~~~~~~vq~~la~~~~~~~~~~a~~~~a~~~~~~~~ 266 (337)
.+.....+..+.+...+.+..+.++..+..+...++. ..+.++++||.+|+||.+..+.+.++...++.......
T Consensus 285 ~~~~~~~Fa~~~~~q~~~~k~~k~d~i~G~~~~~~~~-----~Gv~~~~hIq~kl~Emi~~~e~~~al~~Aa~~~a~~~~ 359 (493)
T COG2368 285 AWYAVSGFARLHRQQAVGRKAVKLDFILGAAYLIAET-----NGVEEFRHIQEKLGEMIALLELMWALSDAAAEEAQKNP 359 (493)
T ss_pred HHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHh-----hCccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcccCC
Confidence 3333334445666677777777777766665555443 46788999999999999999999999999998776554
Q ss_pred -----CChhhhhHHHHHHHHHHHHHHHHHHHhhCCCcccCcc
Q 019707 267 -----VDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEY 303 (337)
Q Consensus 267 -----~~~~~~~~~k~~~~~~~~~~~~~~~~~~G~~~~~~~~ 303 (337)
|....+...|+++++...++...+.++.||.-.+-.+
T Consensus 360 ~G~~~Pn~~~~n~~r~~~~~~~~~~~~~l~~i~gg~~i~lPS 401 (493)
T COG2368 360 NGAWLPNPAYANVGRVYAPKAYPRIKEILQDISGGGIITLPS 401 (493)
T ss_pred CCceecCHHHHhhHHHhcccchHHHHHHHHHHhcCceeecCc
Confidence 6788899999999999999999999999877665444
No 46
>TIGR02310 HpaB-2 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component. This gene for this monooxygenase is found within apparent operons for the degradation of 4-hydroxyphenylacetic acid in Shigella, Photorhabdus and Pasteurella. The family modelled by this alignment is narrowly limited to gammaproteobacteria to exclude other aromatic hydroxylases involved in various secondary metabolic pathways. Generally, this enzyme acts with the assistance of a small flavin reductase domain protein (HpaC) to provide the cycle the flavin reductant for the reaction. This family of sequences is a member of a larger subfamily of monooxygenases (pfam03241).
Probab=99.82 E-value=1.6e-17 Score=154.78 Aligned_cols=269 Identities=14% Similarity=0.052 Sum_probs=178.7
Q ss_pred HHHHHHHHHHHhccCchhhHhhhhhhhHHHHH-HhcCC------HHHHhhhchhhhcCcceeEEEecCCCCCC------C
Q 019707 23 LYHCIAMEEISRASGSVGLSYGAHSNLCINQL-VRHGS------PAQKDKYLPKLISGEHVGALAMSEPNAGS------D 89 (337)
Q Consensus 23 ~~~~~~~e~la~~~~~~a~~~~~~~~~~~~~l-~~~g~------~~~~~~~l~~i~~g~~~~~~~~te~~~gs------~ 89 (337)
...-+.++.+++.. .+|..-.....+.... ...++ .+-..+|+..+...++..+.++++|...- +
T Consensus 93 ~~rr~a~~~~a~~t--~G~~grspdy~~t~~~~~~~~~~~~~~y~~n~~~yy~~~qenDL~~~hA~~dPk~DRsk~p~e~ 170 (519)
T TIGR02310 93 RQQRDAIAEWSRLS--YGWMGRTPDYKAAFGSALGANPGFYGKFEDNARNWYKRIQESCLYFNHAIVNPPIDRNKPIDQV 170 (519)
T ss_pred HHHHHHHHHHHHHc--cCccccCHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHhCceeecceeCCCCCCCCccccC
Confidence 34457777887763 3332112221222211 22233 24457889999999999999999987321 1
Q ss_pred cCCcEeEEEEeCCeEEEeeeeEeeeCCCCCCEEEE-EEEeCC-CCCCCCeEEEEEeCCCCCeeeccccccc---cCCCCc
Q 019707 90 VVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVV-YAKTDI-KAGSKGITAFIIEKGMPGFSTAQKLDKL---GMRGSD 164 (337)
Q Consensus 90 ~~~~~~~a~~~~~g~~l~G~k~~~s~~~~ad~~lv-~a~~~~-~~~~~~~~~flvp~~~~Gv~~~~~~~~~---g~~~~~ 164 (337)
.....-..+++++|++|+|.|..+|+++.+|+++| ..+..- .++++....|.||.++|||+++.....- ...+++
T Consensus 171 ~D~~v~VVee~~dGIVVrGAK~~aT~a~~a~ei~V~~~~~~~~~~d~dyAvaFavP~dtpGlk~IcR~s~~~~~~~~~~~ 250 (519)
T TIGR02310 171 KDVYIKIEEERDDGIVVSGAKVVATNSALTHYNFIGFGSAQIIGDNDDFALMFIAPMDAEGVKLICRHSYELVAGATGSP 250 (519)
T ss_pred CCCceEEEEEcCCcEEEeCHHHHhcccchhcceeeccCcccccCCCCCeEEEEEeEcCCCceEEEeCCchhhccccCCCC
Confidence 12223445778899999999999999999999998 444311 2355678899999999999998654321 000111
Q ss_pred ------------ceeEEEceeeeCCCCcccCCC--ch--HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC
Q 019707 165 ------------TCELVFENCFVPNENVLGQEG--KG--VYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFG 228 (337)
Q Consensus 165 ------------~~~v~f~~v~Vp~~~vl~~~~--~g--~~~~~~~~~~~~~~~~a~~~G~~~~al~~a~~~~~~r~~~g 228 (337)
.+-++||||+||||+||-..+ .. +.....+..+.......+.++-++-.+..+...+..
T Consensus 251 fD~PlssrfdE~Da~vVFDdVfVPWErVF~~gd~e~~~~~~~~~~~~~~~~~q~~~r~~~k~dfl~G~a~~~ae~----- 325 (519)
T TIGR02310 251 FDYPLSSRFDENDAILVMDSVFIPWENVLIYRDFERCRTWAQYGGFARLFPMQACTRLAVKLDFITGLLHKALQC----- 325 (519)
T ss_pred CcCccccccCCceEEEEeCCcccchHHceecCCHHHHHhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 245899999999999983322 11 111111112222222335555555555555444442
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-----CChhhhhHHHHHHHHHHHHHHHHHHHhhCCCc
Q 019707 229 RPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGK-----VDPKDCAGVILCAAERATQVTLQAIQCLGGNG 298 (337)
Q Consensus 229 ~~~~~~~~vq~~la~~~~~~~~~~a~~~~a~~~~~~~~-----~~~~~~~~~k~~~~~~~~~~~~~~~~~~G~~~ 298 (337)
..+.++++||.+|+|+....|..++++..+........ |....+..+|.+.++...++.+.+.+++||.-
T Consensus 326 ~G~~~~~hVqekl~Eli~~~E~~~a~~~Aa~~~~~~~~~G~~~P~~~~~~a~r~~~~~~y~r~~eil~~~~agGl 400 (519)
T TIGR02310 326 TGVLEFRGVQAQMGEVVAWRNLFWTLTDAMAGSAYQWKNGAQLPSAQALQTYRVMAPMAYHTIKKIIEQTVTSGL 400 (519)
T ss_pred hCcccchHHHHHHHHHHHHHHHHHHHHHHHHhcCccCCCCeEeeCHHHHHHHHHHhhhhhHHHHHHHHHHccCCe
Confidence 45678999999999999999999999999988666542 67788899999999999999999986665433
No 47
>PF08028 Acyl-CoA_dh_2: Acyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR013107 Acyl Co-A dehydrogenases (1.3.99.3 from EC) are enzymes that catalyse the first step in each cycle of beta-oxidation in mitochondion. Acyl-CoA dehydrogenases [, , ] catalyze the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with concommitant reduction of enzyme-bound FAD. Reoxidation of the flavin involves transfer of electrons to ETF (electron transfering flavoprotein). These enzymes are homodimers containing one molecule of FAD. The monomeric enzyme is folded into three domains of approximately equal size. The N-terminal and the C-terminal are mainly alpha-helices packed together, and the middle domain consists of two orthogonal beta-sheets. The flavin ring is buried in the crevise between two alpha-helical domains and the beta-sheet of one subunit, and the adenosine pyrophosphate moiety is stretched into the subunit junction with one formed by two C-terminal domains []. The C-terminal domain of Acyl-CoA dehydrogenase is an all-alpha, four helical up-and-down bundle.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3AFE_C 3AFF_A 2JBT_D 2JBS_C 2JBR_B 2RFQ_B 2OR0_B.
Probab=99.72 E-value=1.2e-16 Score=125.49 Aligned_cols=123 Identities=24% Similarity=0.303 Sum_probs=107.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh--cCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CCCCC----h
Q 019707 200 LVLAAGPLGIMQACLDVVLPYVRQREQ--FGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCD----NGKVD----P 269 (337)
Q Consensus 200 ~~~~a~~~G~~~~al~~a~~~~~~r~~--~g~~~~~~~~vq~~la~~~~~~~~~~a~~~~a~~~~~----~~~~~----~ 269 (337)
+.++++++|+++++++++++++++|.. .+.++.+.|.+|.+|+++...+++++++++.+++.++ .+.+. .
T Consensus 1 L~~aa~~lG~A~~al~~~~~~~~~r~~~~~~~~~~~~p~~q~~lgea~~~~~aa~~~l~~~~~~~~~~~~~g~~~~~~~~ 80 (134)
T PF08028_consen 1 LSFAAVYLGIARGALDEFVEYLRGRVRASGGAPLADDPYIQARLGEAAARLDAARALLYRAARRLWEAADAGEELTPEER 80 (134)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSBCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----HHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCchhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCHHHH
Confidence 457899999999999999999999887 5678999999999999999999999999999999844 44322 3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhCCCcccCcchHHHHHHhhccCcccCChH
Q 019707 270 KDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTS 322 (337)
Q Consensus 270 ~~~~~~k~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~r~~rd~~~~~~~~g~~ 322 (337)
......|.++.+.+.++++.+++++|+.++.+++|++|+|||+++...|...+
T Consensus 81 ~~~~~~~~~a~~~a~~av~~l~~~~G~~a~~~~~pl~R~~RD~~~~~~H~~~~ 133 (134)
T PF08028_consen 81 ARLRAAKAHAARLAREAVDRLFRLAGGSALYRSSPLERIWRDVRAGAQHPALN 133 (134)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCSGGGGGBTTSHHHHHHHHHHHHTTSGGG-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhChHhhhcCCcHHHHHHHHHHHhhCcccC
Confidence 45666789999999999999999999999999999999999999999987654
No 48
>PF02770 Acyl-CoA_dh_M: Acyl-CoA dehydrogenase, middle domain; InterPro: IPR006091 Acyl-CoA dehydrogenases (1.3.99.3 from EC) are a family of flavoproteins that catalyse the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with the concomitant reduction of enzyme-bound FAD. Different family members share a high sequence identity, catalytic mechanisms, and structural properties, but differ in the position of their catalytic bases and in their substrate binding specificity. Butyryl-CoA dehydrogenase [] prefers short chain substrates, medium chain- and long-chain acyl-CoA dehydrogenases prefer medium and long chain substrates, respectively, and Isovaleryl-CoA dehydrogenase [] prefers branched-chain substrates. The monomeric enzyme is folded into three domains of approximately equal size, where the N-terminal domain is all-alpha, the middle domain is an open (5,8) barrel, and the C-terminal domain is a four-helical bundle. The constituent families differ in the numbers of C-terminal domains. This entry represents the middle beta-barrel domain found in medium chain acyl-CoA dehydrogenases, as well as in the related peroxisomal acyl-CoA oxidase-II enzymes. Acyl-CoA oxidase (ACO; 1.3.3.6 from EC) catalyzes the first and rate-determining step of the peroxisomal beta-oxidation of fatty acids [].; GO: 0003995 acyl-CoA dehydrogenase activity, 0055114 oxidation-reduction process; PDB: 3MDD_B 1UDY_C 3MDE_B 2UXW_A 3B96_A 1SIQ_A 1SIR_A 2R0N_A 2R0M_A 2D29_B ....
Probab=99.60 E-value=4.1e-15 Score=95.76 Aligned_cols=51 Identities=41% Similarity=0.748 Sum_probs=46.7
Q ss_pred EEEecCCCCCCCcCCcEeEEEEeCCeEEEeeeeEeeeCCCCCCEEEEEEEe
Q 019707 78 ALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKT 128 (337)
Q Consensus 78 ~~~~te~~~gs~~~~~~~~a~~~~~g~~l~G~k~~~s~~~~ad~~lv~a~~ 128 (337)
++++|||.+|+|...+++++++++++|+|||+|.|+++++.||+++|+||+
T Consensus 1 ~~a~tE~~~g~d~~~~~t~a~~~~~~~~L~G~K~~v~~~~~a~~~~v~ar~ 51 (52)
T PF02770_consen 1 AFALTEPGAGSDLAAVETTARRDGDGYVLNGEKRFVSNAPDADWFLVFART 51 (52)
T ss_dssp EEE--BTTBSSSGGG-SSEEEEETTEEEEEEEEEEEETTTTESEEEEEEEE
T ss_pred CEEEcCCCCCCCcccCEEEeecccceEEEeeEEEEECCcCccCEEEEEEEE
Confidence 579999999999999999999999999999999999999999999999997
No 49
>PF11794 HpaB_N: 4-hydroxyphenylacetate 3-hydroxylase N terminal; InterPro: IPR024674 This domain is found in the N terminus of HpaB, which encodes part of the 4-hydroxyphenylacetate 3-hydroxylase from Escherichia coli []. The enzyme is NADH-dependent and uses FAD as the redox chromophore. The domain is also found in pyoverdin chromophore biosynthetic protein (PvcC), which may play a role in one of the proposed hydroxylation steps of pyoverdine chromophore biosynthesis [] and in 4-hydroxybutyryl-CoA dehydratase (4-BUDH), a key enzyme in the metabolism of gamma-aminobutyrate [].; PDB: 3HWC_D 1U8V_D 2YYM_A 2YYI_A 2YYJ_A 2YYL_A 2YYG_A 2YYK_A.
Probab=99.50 E-value=5.8e-13 Score=114.16 Aligned_cols=121 Identities=21% Similarity=0.327 Sum_probs=82.9
Q ss_pred HHHhhhchhhhcCcceeEEEecCCCCC--CC-----cCCcEeEEEEeCCeEEEeeeeEeeeCCCCCCEEEEEEEeC-CCC
Q 019707 61 AQKDKYLPKLISGEHVGALAMSEPNAG--SD-----VVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTD-IKA 132 (337)
Q Consensus 61 ~~~~~~l~~i~~g~~~~~~~~te~~~g--s~-----~~~~~~~a~~~~~g~~l~G~k~~~s~~~~ad~~lv~a~~~-~~~ 132 (337)
+-..+|+..+.+.++..+.++++|... .. .....-..+++++|++|+|.|...|+++.+|.++|+.... .+.
T Consensus 123 ~n~~~y~~~~~~ndL~~t~a~~dPq~DRs~~~~q~d~d~~lrVVee~~dGIvVrGAK~~~T~a~~adei~V~p~~~~~~~ 202 (264)
T PF11794_consen 123 ENIRRYYEYVQENDLFLTHAITDPQGDRSKPPHQEDPDVYLRVVEETDDGIVVRGAKMLATGAPYADEILVFPTRAMRPG 202 (264)
T ss_dssp HHHHHHHHHHHHHT--EEEEES--SSSTTSTGGSSSCCSB-EEEEE-SSEEEEEEEEEEEETGCCSSEEEE--SSSSTTC
T ss_pred HHHHHHHHHHHHhCcEeeeeeeCCCcCCCCCccccCCCceEEEEEEcCCCEEEeChhhhhcCCcccccEEEeeccCCCCC
Confidence 445778899999999999999999832 11 1122334577889999999999999999999999997654 334
Q ss_pred CCCCeEEEEEeCCCCCeeeccccccccCCCCc------------ceeEEEceeeeCCCCcc
Q 019707 133 GSKGITAFIIEKGMPGFSTAQKLDKLGMRGSD------------TCELVFENCFVPNENVL 181 (337)
Q Consensus 133 ~~~~~~~flvp~~~~Gv~~~~~~~~~g~~~~~------------~~~v~f~~v~Vp~~~vl 181 (337)
+.+....|.||.++||++++........+.++ -+-++|||||||||+||
T Consensus 203 d~dyAv~FavP~~tpGlk~i~R~s~~~~~~~~~D~PlssrfdE~Da~vvFDdVfVPWeRVF 263 (264)
T PF11794_consen 203 DEDYAVAFAVPMNTPGLKIICRESYADGRRSPFDHPLSSRFDEMDALVVFDDVFVPWERVF 263 (264)
T ss_dssp CGGG-EEEEEETT-TTEEEEE---TTGCCG-TTT-TTTTS----EEEEEEEEEEEEGGGEE
T ss_pred CCceEEEEEccCCCCCEEEEeCCCCCCCccccCcCCcccccCCceEEEEECCcccchhhcc
Confidence 56778899999999999998765444333111 14589999999999986
No 50
>PF02771 Acyl-CoA_dh_N: Acyl-CoA dehydrogenase, N-terminal domain; InterPro: IPR006092 Mammalian Co-A dehydrogenases (1.3.99.3 from EC) are enzymes that catalyse the first step in each cycle of beta-oxidation in mitochondion. Acyl-CoA dehydrogenases [, , ] catalyze the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with concommitant reduction of enzyme-bound FAD. Reoxidation of the flavin involves transfer of electrons to ETF (electron transfering flavoprotein). These enzymes are homodimers containing one molecule of FAD. The monomeric enzyme is folded into three domains of approximately equal size. The N-terminal and the C-terminal are mainly alpha-helices packed together, and the middle domain consists of two orthogonal beta-sheets. The flavin ring is buried in the crevise between two alpha-helical domains and the beta-sheet of one subunit, and the adenosine pyrophosphate moiety is stretched into the subunit junction with one formed by two C-terminal domains []. The N-terminal domain of Acyl-CoA dehydrogenase is an all-alpha domain, on dimerisation, the N-terminal of one molecule extends into the other dimer and lies on the surface of the molecule.; GO: 0003995 acyl-CoA dehydrogenase activity, 0055114 oxidation-reduction process; PDB: 2WBI_B 1SIQ_A 1SIR_A 2R0N_A 2R0M_A 2DVL_A 1UKW_B 3MDD_B 1UDY_C 3MDE_B ....
Probab=99.33 E-value=9.8e-13 Score=100.01 Aligned_cols=74 Identities=43% Similarity=0.781 Sum_probs=68.2
Q ss_pred CccccccCCCCCccCCCCCCCHHHHHHHHHHHHhccCchhhHhhhhhhhHHHHHHhcCCHHHHhhhchhhhcCc
Q 019707 1 MGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGE 74 (337)
Q Consensus 1 l~~~Gl~~l~~p~~~GG~~~~~~~~~~~~e~la~~~~~~a~~~~~~~~~~~~~l~~~g~~~~~~~~l~~i~~g~ 74 (337)
|++.||+++.+|++|||.+.++.+.+.+++++++.|.++++.+.+|.+++...|..+++++||++|||++++|+
T Consensus 40 l~~~G~~~~~~p~~~GG~~~~~~~~~~~~e~l~~~~~~~~~~~~~~~~l~~~~i~~~gs~eq~~~~lp~~~~Ge 113 (113)
T PF02771_consen 40 LGEAGLLGLAVPEEYGGLGLSPLELAIVLEELARADASLAFALGVHQSLGAPPIAKFGSEEQKEKWLPRLASGE 113 (113)
T ss_dssp HHHTTTTSTTSCGGGTSEB-THHHHHHHHHHHHHHTHHHHHHHHHHHHCHHHHHHHHSHHHHHHHHHHHHHTTS
T ss_pred HHHHHHhhhhccccccCcchhhhhHHHHHHhhhhhcccccchhhhhhHHHHHHHHHHCCHHHHHHHhHHHhCCC
Confidence 46889999999999999999999999999999999999999888887567789999999999999999999986
No 51
>PF03241 HpaB: 4-hydroxyphenylacetate 3-hydroxylase C terminal; InterPro: IPR024719 This C-terminal domain is found in HpaB, which encodes part of the 4-hydroxyphenylacetate 3-hydroxylase from Escherichia coli []. The enzyme is NADH-dependent and uses FAD as the redox chromophore. This domain is also found in pyoverdin chromophore biosynthetic protein PvcC, which may play a role in one of the proposed hydroxylation steps of pyoverdine chromophore biosynthesis [] and in 4-hydroxybutyryl-CoA dehydratase (4-BUDH), a key enzyme in the metabolism of gamma-aminobutyrate [].; PDB: 3HWC_D 1U8V_D 2YYM_A 2YYI_A 2YYJ_A 2YYL_A 2YYG_A 2YYK_A.
Probab=97.67 E-value=0.0033 Score=52.66 Aligned_cols=73 Identities=11% Similarity=0.139 Sum_probs=61.0
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-----CChhhhhHHHHHHHHHHHHHHHHHHHhhCCCcccC
Q 019707 229 RPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGK-----VDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVN 301 (337)
Q Consensus 229 ~~~~~~~~vq~~la~~~~~~~~~~a~~~~a~~~~~~~~-----~~~~~~~~~k~~~~~~~~~~~~~~~~~~G~~~~~~ 301 (337)
..+.++|+||.+|+|+...+|..++++..+........ |.......+|.+.++...++.+.+.+++||.-.+.
T Consensus 42 ~G~~~~~hVqekl~Eli~~~E~~~a~~~Aae~~a~~~~~G~~~P~~~~~~a~r~~~~~~y~r~~eil~~l~gg~li~~ 119 (205)
T PF03241_consen 42 NGIDKFPHVQEKLGELIAYLETLRALLIAAEAEAEPDPSGVYVPNPLPLNAARNYFPKNYPRIVEILQDLGGGGLITL 119 (205)
T ss_dssp TTGTTSHHHHHHHHHHHHHHHHHHHHHHHHHHT-EE-TTSSEE--HHHHHHHHHHHHHHHHHHHHHHHHHHGGGGTC-
T ss_pred hCCccchHHHHHHHHHHHHHHHHHHHHHHHHhcCccCCCCeEeECHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeC
Confidence 35678999999999999999999999999888665532 77888999999999999999999999998877764
No 52
>PTZ00457 acyl-CoA dehydrogenase; Provisional
Probab=92.47 E-value=2.8 Score=40.43 Aligned_cols=79 Identities=8% Similarity=-0.011 Sum_probs=63.5
Q ss_pred cCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC-hhhhhHHHHHHHHHHHHHHHHHHHhhCCCcccCcchH
Q 019707 227 FGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVD-PKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYAT 305 (337)
Q Consensus 227 ~g~~~~~~~~vq~~la~~~~~~~~~~a~~~~a~~~~~~~~~~-~~~~~~~k~~~~~~~~~~~~~~~~~~G~~~~~~~~~~ 305 (337)
+|..|.+.|.++.+|+++.+.++++-+.+.++...+.++.+. ..+...++.|+.+...++-+.+-++... ++.++..+
T Consensus 429 ~~~~i~~~q~~l~rlad~a~~lyam~a~~sra~~~~~~~~~~~~~e~~la~~fc~~a~~rv~~~~~~~~~~-~~~~~~~~ 507 (520)
T PTZ00457 429 SGSQVPYQQLLLNRLGEAASLLYAASAVASRASMCVSKGLPSAKVEGELASAFIAMAVSRARQLSEESCNV-GKTADDSY 507 (520)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CccchHHH
Confidence 467899999999999999999999999999999888877544 3456789999999888888888788776 55443333
Q ss_pred H
Q 019707 306 G 306 (337)
Q Consensus 306 ~ 306 (337)
.
T Consensus 508 ~ 508 (520)
T PTZ00457 508 K 508 (520)
T ss_pred H
Confidence 3
No 53
>PF14749 Acyl-CoA_ox_N: Acyl-coenzyme A oxidase N-terminal; PDB: 2FON_A 1W07_B 1IS2_B 2DDH_A.
Probab=88.94 E-value=0.37 Score=36.89 Aligned_cols=34 Identities=29% Similarity=0.463 Sum_probs=28.5
Q ss_pred HhhhhhhhHHHHHHhcCCHHHHhhhchhhhcCcc
Q 019707 42 SYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEH 75 (337)
Q Consensus 42 ~~~~~~~~~~~~l~~~g~~~~~~~~l~~i~~g~~ 75 (337)
.+..|.++.+..|...|+++|+++|+|+..+.+.
T Consensus 91 p~~lH~~mFip~I~~qgt~EQ~~~Wlp~a~~~~I 124 (125)
T PF14749_consen 91 PLGLHFGMFIPTIMGQGTEEQQAKWLPKAENYEI 124 (125)
T ss_dssp THHHHHHTHHHHHHHHS-HHHHHHHHHHHHTTSS
T ss_pred hhhhHHHHHHHHHHHcCCHHHHHHHHHHHHCCcc
Confidence 3448888999999999999999999999887764
No 54
>KOG0137 consensus Very-long-chain acyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=78.90 E-value=63 Score=31.46 Aligned_cols=70 Identities=14% Similarity=0.105 Sum_probs=60.9
Q ss_pred cCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC-hhhhhHHHHHHHHHHHHHHHHHHHhhCC
Q 019707 227 FGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVD-PKDCAGVILCAAERATQVTLQAIQCLGG 296 (337)
Q Consensus 227 ~g~~~~~~~~vq~~la~~~~~~~~~~a~~~~a~~~~~~~~~~-~~~~~~~k~~~~~~~~~~~~~~~~~~G~ 296 (337)
.++.+.+.|.+.++||+..+.++++-+.+.+|.+....+-+. ..+...+..++++...++-..+..+-++
T Consensus 533 ~~k~iv~~q~~l~rlA~~~~~iYam~a~isRASrS~~igl~~aDhEl~~at~~C~ea~~~~~~~l~~~~~~ 603 (634)
T KOG0137|consen 533 HGKGIVEEQSVLQRLANVAINIYAMVAVISRASRSYSIGLPNADHELALATAICSEASLRVLRWLWAASSG 603 (634)
T ss_pred hccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHhcCCcchhHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 467899999999999999999999999999999988887544 4678888999999888888888777666
No 55
>PRK09463 fadE acyl-CoA dehydrogenase; Reviewed
Probab=51.03 E-value=3e+02 Score=28.40 Aligned_cols=101 Identities=15% Similarity=0.129 Sum_probs=64.7
Q ss_pred cCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChhhhhHHHHHHHHHHHHHHHHHHHhhCCCcccCcchHH
Q 019707 227 FGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATG 306 (337)
Q Consensus 227 ~g~~~~~~~~vq~~la~~~~~~~~~~a~~~~a~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~ 306 (337)
.|..+...+.+..+|+++.+.++.+-+.+.++. +++.+. .....++.++.+...++-+..-.+....+ ..++.
T Consensus 559 ~g~~l~~~e~~~~Rl~d~~~~ly~~~a~l~r~~---~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~n~p---~~~~~ 631 (777)
T PRK09463 559 LGGSLKRRERLSARLGDILSQLYLASAVLKRYE---DEGRPE-ADLPLVHWAVQDALYQAEQALDGLLRNFP---NRVVA 631 (777)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCCCch-hHHHHHHHHHHHHHHHHHHHHHHHHHcCC---chHHH
Confidence 366789999999999999999999999888877 333322 22456666666665555554545544332 22244
Q ss_pred HHHHhhccCc---ccCChHHHHHHHHHHHHHh
Q 019707 307 RLLRDAKLYE---IGAGTSEIRRMIIGRALLK 335 (337)
Q Consensus 307 r~~rd~~~~~---~~~g~~~~~~~~l~~~~~~ 335 (337)
..+|-. .|+ .+.++++.+-..+++.+..
T Consensus 632 ~~~~~~-~~p~g~~~~~p~d~~~~~~~~~~~~ 662 (777)
T PRK09463 632 GLLRVL-VFPLGRRYRAPSDKLDHQVAKLLQT 662 (777)
T ss_pred HHHHHe-eeCCCCCCCCCCHHHHHHHHHHHhC
Confidence 444433 444 3455667777777777664
No 56
>PF12584 TRAPPC10: Trafficking protein particle complex subunit 10, TRAPPC10; InterPro: IPR022233 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. This entry represents a domain which forms part of the TRAPP complex for mediating vesicle docking and fusion in the Golgi apparatus. The fungal version is referred to as Trs130, and an alternative vertebrate alias is TMEM1 [, ].
Probab=40.65 E-value=84 Score=24.64 Aligned_cols=62 Identities=11% Similarity=0.128 Sum_probs=34.5
Q ss_pred EEeCCeEEEeeeeEeeeCCCCCCEEEEEEEeCCCCCCCCeEEEEEeCCC-----CCeeecccccc--------ccCCCCc
Q 019707 98 DRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGM-----PGFSTAQKLDK--------LGMRGSD 164 (337)
Q Consensus 98 ~~~~~g~~l~G~k~~~s~~~~ad~~lv~a~~~~~~~~~~~~~flvp~~~-----~Gv~~~~~~~~--------~g~~~~~ 164 (337)
..+.+.|.|+|+|...--. .++....+.+.++|... |.|++....+. .......
T Consensus 65 ~a~~~~WlV~Grrrg~f~~-------------~~~~~~~~~l~LIPL~~G~L~lP~V~i~~~~~~~~~~~~~~~~~~~~~ 131 (147)
T PF12584_consen 65 VADSDNWLVSGRRRGVFSL-------------SDGSEHEIPLTLIPLRAGYLPLPKVEIRPYDPSNISKGDSMPRLEPFP 131 (147)
T ss_pred ecCCCcEEEeccCcceEEe-------------cCCCeEEEEEEEEecccceecCCEEEEEeccCCCcccccccccccCCC
Confidence 3456679999998632211 22233456677788764 67777544421 1233445
Q ss_pred ceeEEEce
Q 019707 165 TCELVFEN 172 (337)
Q Consensus 165 ~~~v~f~~ 172 (337)
++++.+.|
T Consensus 132 ~~ev~~~n 139 (147)
T PF12584_consen 132 PCEVDYRN 139 (147)
T ss_pred ceeEEEcC
Confidence 56666654
No 57
>PF05284 DUF736: Protein of unknown function (DUF736); InterPro: IPR007948 This family consists of several uncharacterised bacterial proteins of unknown function.
Probab=35.62 E-value=1.3e+02 Score=22.17 Aligned_cols=60 Identities=15% Similarity=0.129 Sum_probs=41.3
Q ss_pred eCCCCCCEEEEEEEeCCCCCCCCeEEEEEeCCCCCeeeccccccccCC-CCcceeEEEceeee
Q 019707 114 TNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMR-GSDTCELVFENCFV 175 (337)
Q Consensus 114 s~~~~ad~~lv~a~~~~~~~~~~~~~flvp~~~~Gv~~~~~~~~~g~~-~~~~~~v~f~~v~V 175 (337)
|..-.+++.+|.....++++.+.+.+++-+.+ ++++..-|...+-. +.+.-.+.+||=-.
T Consensus 20 TL~~~~~i~lvP~~~~~~e~aPdyRV~~~~~~--~~EvGaaW~~~~~~tg~~Ylsl~LddP~f 80 (107)
T PF05284_consen 20 TLTLDAKIRLVPNESKDSENAPDYRVYAGPRG--GVEVGAAWKKTSKDTGRDYLSLKLDDPSF 80 (107)
T ss_pred EeEecccEEEEeCCCCCCCCCCCEEEEecCCC--CCceeeeehhhccccCCceEEEEEcCCCC
Confidence 33445667666655434455566666665333 89999999999888 88888899987543
No 58
>PF05428 CRF-BP: Corticotropin-releasing factor binding protein (CRF-BP); InterPro: IPR008435 This family consists of several eukaryotic corticotropin-releasing factor binding proteins (CRF-BP or CRH-BP). Corticotropin-releasing hormone (CRH) plays multiple roles in vertebrate species. In mammals, it is the major hypothalamic releasing factor for pituitary adrenocorticotropin secretion, and is a neurotransmitter or neuromodulator at other sites in the central nervous system. In non-mammalian vertebrates, CRH not only acts as a neurotransmitter and hypophysiotropin, it also acts as a potent thyrotropin-releasing factor, allowing CRH to regulate both the adrenal and thyroid axes, especially in development. CRH-BP is thought to play an inhibitory role in which it binds CRH and other CRH-like ligands and prevents the activation of CRH receptors. There is however evidence that CRH-BP may also exhibit diverse extra and intracellular roles in a cell specific fashion and at specific times in development [].
Probab=30.94 E-value=51 Score=29.09 Aligned_cols=14 Identities=29% Similarity=0.579 Sum_probs=11.9
Q ss_pred CeEEEeeeeEeeeC
Q 019707 102 GGYIINGNKMWCTN 115 (337)
Q Consensus 102 ~g~~l~G~k~~~s~ 115 (337)
|||+|||+|...+.
T Consensus 114 DGW~LnGe~FPs~~ 127 (311)
T PF05428_consen 114 DGWELNGEKFPSSQ 127 (311)
T ss_pred eceEECccCCcCcc
Confidence 89999999986664
No 59
>PRK13701 psiB plasmid SOS inhibition protein B; Provisional
Probab=28.94 E-value=1.4e+02 Score=23.01 Aligned_cols=65 Identities=11% Similarity=0.121 Sum_probs=40.4
Q ss_pred eCCeEEEeeeeEeeeCCCCCCEEEEEEEeCCCCCCCCeEEEEEeCCCCCeeeccccccc--cCCCCcceeEEEceee
Q 019707 100 VDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKL--GMRGSDTCELVFENCF 174 (337)
Q Consensus 100 ~~~g~~l~G~k~~~s~~~~ad~~lv~a~~~~~~~~~~~~~flvp~~~~Gv~~~~~~~~~--g~~~~~~~~v~f~~v~ 174 (337)
.++||++||+-. +....++-|.+|-.+ +++...+++....+ +.+.|-.. --.|-+.+.+...+-+
T Consensus 42 ~P~gW~~naEy~----sEFgGffPVq~Rfsp--~~~~~~l~vCSpG~----~sP~W~~Vl~~~gG~~~a~v~~~~~~ 108 (144)
T PRK13701 42 APDGWTMNGEYG----SEFGGFFPVQVRFTP--AHERFHLALCSPGD----VSPVWVLVLVNAGGEPFAVVQVQDRF 108 (144)
T ss_pred CCccceeehhhh----ccccCeeeEEEEecC--CCCCeEEEEeCCCC----CCcceEEEEEcCCCcEEEEEEecCcc
Confidence 478999999863 445568999999876 55677777776654 22334211 1124556666665544
No 60
>KOG3297 consensus DNA-directed RNA polymerase subunit E' [Transcription]
Probab=21.40 E-value=4.6e+02 Score=21.52 Aligned_cols=14 Identities=29% Similarity=0.617 Sum_probs=11.6
Q ss_pred EEEceeeeCCCCcc
Q 019707 168 LVFENCFVPNENVL 181 (337)
Q Consensus 168 v~f~~v~Vp~~~vl 181 (337)
-.|||.+||++.+.
T Consensus 102 ~FFdDI~IP~~~L~ 115 (202)
T KOG3297|consen 102 GFFDDIFIPKEMLP 115 (202)
T ss_pred EeeeceeechhhCC
Confidence 38999999988765
No 61
>PF04115 Ureidogly_hydro: Ureidoglycolate hydrolase ; InterPro: IPR007247 Ureidoglycolate hydrolase (3.5.3.19 from EC) carries out the third step in the degradation of allantoin.; GO: 0004848 ureidoglycolate hydrolase activity, 0000256 allantoin catabolic process; PDB: 1YQC_B 1XSR_A 2BDR_B 1XSQ_A.
Probab=20.95 E-value=4.4e+02 Score=21.09 Aligned_cols=53 Identities=17% Similarity=0.182 Sum_probs=31.1
Q ss_pred EeCCeEEEe-------eeeEeeeCCCCCCEEEEEEEeCCCCCCCCeEEEEEeCCCCCeeec
Q 019707 99 RVDGGYIIN-------GNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTA 152 (337)
Q Consensus 99 ~~~~g~~l~-------G~k~~~s~~~~ad~~lv~a~~~~~~~~~~~~~flvp~~~~Gv~~~ 152 (337)
+...-+.|+ ++-.|+......+|++|.|...+.++...+.+|+++... ||.+.
T Consensus 64 ~~~~p~~v~~lERHp~tsQ~fiPl~~~~~~lvvVA~~~~~Pd~~~lrAF~~~~gq-gV~~~ 123 (165)
T PF04115_consen 64 PRELPFEVSMLERHPLTSQAFIPLDGSPWYLVVVAPDDDGPDPETLRAFLAPGGQ-GVNYH 123 (165)
T ss_dssp BE-SSEEEEEEEE-TTB-EEEEESBS---EEEEEEESSSS-ECCCEEEEEE-SS--EEEE-
T ss_pred ccCCccccceeccCCCeeEEEEECCCCccEEEEEcCCCCCCCccceEEEEEcCCE-EEEEC
Confidence 333446666 677788876644478888876555566889999997765 56664
Done!