Query 019709
Match_columns 337
No_of_seqs 142 out of 206
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 05:57:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019709.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019709hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i68_A Protein EMRE; transmemb 96.0 0.0025 8.4E-08 54.3 2.2 73 184-256 31-104 (137)
2 3b5d_A Multidrug transporter E 95.8 0.0033 1.1E-07 51.1 2.2 72 185-256 32-104 (110)
3 2hac_A T-cell surface glycopro 7.1 1.9E+02 0.0067 18.7 1.5 26 212-237 5-30 (33)
4 1oo0_A MAGO nashi protein; RNA 7.0 1.2E+02 0.0043 25.8 0.7 20 50-69 28-47 (147)
5 1y0n_A Hypothetical UPF0270 pr 2.9 5.2E+02 0.018 19.7 1.4 16 281-296 12-27 (78)
6 2llm_A Amyloid beta A4 protein 3.8 3.2E+02 0.011 18.7 0.0 19 216-234 25-43 (43)
7 3rlf_F Maltose transport syste 2.4 9.8E+02 0.034 23.7 3.3 53 185-241 16-68 (514)
8 2ks1_B Epidermal growth factor 2.3 1E+03 0.035 16.0 2.1 11 225-235 29-39 (44)
9 3ng0_A Glutamine synthetase; G 2.1 6E+02 0.021 25.0 1.1 67 3-85 320-387 (473)
10 3see_A Hypothetical sugar bind 2.1 1.3E+03 0.043 20.5 2.9 24 28-51 107-134 (222)
No 1
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=96.01 E-value=0.0025 Score=54.34 Aligned_cols=73 Identities=22% Similarity=0.157 Sum_probs=50.9
Q ss_pred ccchHhhHHHHHHHHHHHhhhccccccHHHHh-cchhHHHHHHHHHHHhccccceeeeehhhheeeceeeEeec
Q 019709 184 APFVAVGLLEALAAATGMAAGAILSGASIPIL-SQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVAS 256 (337)
Q Consensus 184 ~kf~i~GllDal~~~L~viA~~ytsgs~~~LL-~q~~IP~tmIlS~ifLk~RY~~~qi~G~~IVl~Gviv~v~s 256 (337)
|++++..++-+++-++...|+.+.|.+....+ ......+++++++++|+.+.+..|++|+.++++|+++...+
T Consensus 31 ~~~~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~ 104 (137)
T 2i68_A 31 WPSVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (137)
T ss_dssp ---CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 34555566788888999999999999976555 89999999999999999999999999999999998887554
No 2
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=95.85 E-value=0.0033 Score=51.11 Aligned_cols=72 Identities=22% Similarity=0.175 Sum_probs=60.7
Q ss_pred cchHhhHHHHHHHHHHHhhhccccccHHHHh-cchhHHHHHHHHHHHhccccceeeeehhhheeeceeeEeec
Q 019709 185 PFVAVGLLEALAAATGMAAGAILSGASIPIL-SQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVAS 256 (337)
Q Consensus 185 kf~i~GllDal~~~L~viA~~ytsgs~~~LL-~q~~IP~tmIlS~ifLk~RY~~~qi~G~~IVl~Gviv~v~s 256 (337)
++++..++-..+-++...|+.+.|.+...-+ ......++.+++++++|.+.+..|++|+.++++|+++....
T Consensus 32 ~~~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~ 104 (110)
T 3b5d_A 32 PSVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 3444455667778888889999999887555 89999999999999999999999999999999998876544
No 3
>2hac_A T-cell surface glycoprotein CD3 zeta chain; transmembrane, alpha helix, membrane protein; NMR {Homo sapiens}
Probab=7.14 E-value=1.9e+02 Score=18.72 Aligned_cols=26 Identities=15% Similarity=0.497 Sum_probs=20.6
Q ss_pred HHHhcchhHHHHHHHHHHHhccccce
Q 019709 212 IPILSQTFLVWQILLSIIFLGRRYRV 237 (337)
Q Consensus 212 ~~LL~q~~IP~tmIlS~ifLk~RY~~ 237 (337)
=-+|++.....-+++..+|+|.|+..
T Consensus 5 CYiLDgiL~iYgii~T~Ly~R~K~~~ 30 (33)
T 2hac_A 5 CYLLDGILFIYGVILTALFLRVKFSR 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred EeehHHHHHHHHHHHHHHHHHHHhhc
Confidence 34677777888888999999988765
No 4
>1oo0_A MAGO nashi protein; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.232.1.1 PDB: 1rk8_B 2x1g_B 1hl6_B 2j0s_C* 2j0q_C* 2hyi_A* 2xb2_C* 3ex7_A* 1p27_A
Probab=7.00 E-value=1.2e+02 Score=25.84 Aligned_cols=20 Identities=50% Similarity=0.768 Sum_probs=13.4
Q ss_pred ecCCccccccCCCCCCCchh
Q 019709 50 RSSKRNYYHNNSNYKNNNVI 69 (337)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~ 69 (337)
|+.-|-=|-|||||||.+.+
T Consensus 28 r~dG~lrYaNnSnYknd~~I 47 (147)
T 1oo0_A 28 RPDGKLRYANNSNYKNDTMI 47 (147)
T ss_dssp CTTSEEEEEEECCTTSSCCE
T ss_pred cCCCeEEEeccCCCcCCeeE
Confidence 34444446789999998643
No 5
>1y0n_A Hypothetical UPF0270 protein PA3463; MCSG, midwest center for structural genomics, protein struct initiative, PSI, structural genomics; 2.00A {Pseudomonas aeruginosa} SCOP: d.291.1.1
Probab=2.92 E-value=5.2e+02 Score=19.68 Aligned_cols=16 Identities=6% Similarity=0.283 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHhHHH
Q 019709 281 LQAADTVLKEVIFLDA 296 (337)
Q Consensus 281 p~AlSnV~kE~~F~~~ 296 (337)
+-.+.|++||+++|+.
T Consensus 12 ~eTL~nLIeefv~Reg 27 (78)
T 1y0n_A 12 ADTLNNLLEDFVTREG 27 (78)
T ss_dssp HHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHhccc
Confidence 5678999999999875
No 6
>2llm_A Amyloid beta A4 protein; alzheimer'S disease, protein fibril; NMR {Homo sapiens} PDB: 2loh_A
Probab=3.82 E-value=3.2e+02 Score=18.68 Aligned_cols=19 Identities=11% Similarity=0.410 Sum_probs=12.9
Q ss_pred cchhHHHHHHHHHHHhccc
Q 019709 216 SQTFLVWQILLSIIFLGRR 234 (337)
Q Consensus 216 ~q~~IP~tmIlS~ifLk~R 234 (337)
....+-..+++|.+++|||
T Consensus 25 ~gVai~~vIVvsl~mlRrr 43 (43)
T 2llm_A 25 GGVVIATVIVITLVMLKKK 43 (43)
Confidence 4555666677777778776
No 7
>3rlf_F Maltose transport system permease protein MALF; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 2r6g_F* 3puv_F* 3pux_F* 3puy_F* 3puz_F* 3pv0_F* 3puw_F* 3fh6_F
Probab=2.45 E-value=9.8e+02 Score=23.65 Aligned_cols=53 Identities=17% Similarity=0.009 Sum_probs=0.0
Q ss_pred cchHhhHHHHHHHHHHHhhhccccccHHHHhcchhHHHHHHHHHHHhccccceeeee
Q 019709 185 PFVAVGLLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLF 241 (337)
Q Consensus 185 kf~i~GllDal~~~L~viA~~ytsgs~~~LL~q~~IP~tmIlS~ifLk~RY~~~qi~ 241 (337)
|.+++|++|+++.+..+..+..-.-....++ ...+.+.-++|..||-..++|+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~y~ 68 (514)
T 3rlf_F 16 KWSVLGLLGLLVGYLVVLMYAQGEYLFAITT----LILSSAGLYIFANRKAYAWRYV 68 (514)
T ss_dssp HHHHHHHHHHHHHHTHHHHHTTTCHHHHHHH----HHHHHHHHHHHHCGGGCTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCccHHHHHHH----HHHHHHHeEEEECCCcccHHHH
No 8
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=2.25 E-value=1e+03 Score=15.96 Aligned_cols=11 Identities=36% Similarity=0.368 Sum_probs=5.6
Q ss_pred HHHHHHhcccc
Q 019709 225 LLSIIFLGRRY 235 (337)
Q Consensus 225 IlS~ifLk~RY 235 (337)
+.-++++|+|-
T Consensus 29 ~~~~~~~RRr~ 39 (44)
T 2ks1_B 29 LGIGLFMRRRH 39 (44)
T ss_dssp HHHHHHHHTTT
T ss_pred HHHHHHhhhhH
Confidence 33455566653
No 9
>3ng0_A Glutamine synthetase; GSI, nitrogen metabolism, synec ligase; HET: ANP; 2.80A {Synechocystis SP}
Probab=2.11 E-value=6e+02 Score=24.99 Aligned_cols=67 Identities=28% Similarity=0.351 Sum_probs=38.5
Q ss_pred ccccccccccCCCccccCCCCCCCCCceeeeee-ecccccCCCceEEEecCCccccccCCCCCCCchhhhhhhhhhhccc
Q 019709 3 SCYSRLTAGSAASHSLLQSPKPSPKAPVSCYLR-DHHANQRLPTTLLFRSSKRNYYHNNSNYKNNNVIYIVASAAAAERS 81 (337)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (337)
.+|+||.-|.-||..-+-+. .|+...|-+|-. .+....| +=+|+.-- +-| -|+.-|+--++.-
T Consensus 320 NSYkRL~pg~~AP~~~~Wg~-~NRsa~iRip~~~~~~~~~R----iE~R~pd~----------~aN-PYLa~Aa~LaAGl 383 (473)
T 3ng0_A 320 NSYKRLVPGFEAPVNLAYSQ-GNRSASVRIPLSGGNPKAKR----LEFRCPDA----------TSN-PYLAFAAMLCAGI 383 (473)
T ss_dssp THHHHBBTTTBCCCBCCEEE-SCTTSSEEECCCSSCGGGCC----EEECSCCT----------TSC-HHHHHHHHHHHHH
T ss_pred chhhcccCCCcCccceeeec-cCCcCceeeeccCCCCCcce----EEeecCCC----------CCC-HHHHHHHHHHHHH
Confidence 57999999988887766665 666666666432 1111222 22333321 111 4776666666677
Q ss_pred Cccc
Q 019709 82 DGHE 85 (337)
Q Consensus 82 ~~~~ 85 (337)
||-+
T Consensus 384 dGI~ 387 (473)
T 3ng0_A 384 DGIK 387 (473)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7764
No 10
>3see_A Hypothetical sugar binding protein; galactose-binding domain-like, structural genomics, joint CE structural genomics, JCSG; HET: MSE; 1.25A {Bacteroides thetaiotaomicron}
Probab=2.05 E-value=1.3e+03 Score=20.54 Aligned_cols=24 Identities=38% Similarity=0.726 Sum_probs=18.3
Q ss_pred Cceeeeeeec----ccccCCCceEEEec
Q 019709 28 APVSCYLRDH----HANQRLPTTLLFRS 51 (337)
Q Consensus 28 ~~~~~~~~~~----~~~~~~~~~~~~~~ 51 (337)
.+|+.+||.. ..|..+-+..++|.
T Consensus 107 ~qV~vfIr~~~~~k~~ngk~~~~Ffmr~ 134 (222)
T 3see_A 107 TPVSVYIKQTNEEKNDNGKLNTTFFMRR 134 (222)
T ss_dssp CEEEEEEEESSCCBCTTSCBCCCEEEET
T ss_pred CcEEEEEEecccccccccccceeEEEEe
Confidence 6899999886 66777666677775
Done!