Query 019709
Match_columns 337
No_of_seqs 142 out of 206
Neff 5.1
Searched_HMMs 13730
Date Mon Mar 25 05:57:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019709.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/019709hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2r6gf1 e.70.1.1 (F:13-260) Ma 24.9 21 0.0015 30.7 3.1 65 184-252 3-67 (248)
2 d1rk8b_ d.232.1.1 (B:) Mago na 5.8 65 0.0048 25.3 0.3 14 55-68 30-43 (141)
3 d1y0na_ d.291.1.1 (A:) Hypothe 4.0 1.7E+02 0.012 20.6 1.4 16 281-296 12-27 (78)
4 d2r6gf1 e.70.1.1 (F:13-260) Ma 3.4 2.6E+02 0.019 23.3 2.5 59 119-177 30-91 (248)
5 d2bvca2 d.128.1.1 (A:105-478) 3.4 1.6E+02 0.012 26.0 1.1 30 3-33 221-250 (374)
6 d2i5nh2 f.23.10.1 (H:1-36) Pho 2.8 3.5E+02 0.025 15.8 1.9 23 206-228 9-31 (36)
7 d1q90a3 f.23.23.1 (A:248-292) 2.8 6.5E+02 0.048 15.6 3.5 30 267-296 3-32 (45)
8 d1vlaa_ d.227.1.2 (A:) Hypothe 2.7 4.3E+02 0.032 18.8 2.9 31 107-137 37-67 (144)
9 d1ml8a_ d.227.1.2 (A:) Hypothe 2.7 7.2E+02 0.052 17.2 4.2 54 80-137 6-59 (134)
10 d2vcha1 c.87.1.10 (A:6-476) Hy 2.3 3.6E+02 0.026 22.0 2.0 32 303-336 352-384 (471)
No 1
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=24.86 E-value=21 Score=30.69 Aligned_cols=65 Identities=18% Similarity=0.089 Sum_probs=45.8
Q ss_pred ccchHhhHHHHHHHHHHHhhhccccccHHHHhcchhHHHHHHHHHHHhccccceeeeehhhheeeceee
Q 019709 184 APFVAVGLLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVII 252 (337)
Q Consensus 184 ~kf~i~GllDal~~~L~viA~~ytsgs~~~LL~q~~IP~tmIlS~ifLk~RY~~~qi~G~~IVl~Gviv 252 (337)
-|++++|++++++.+..+.++..=+-.. --..+..+++.-++++.+|...++|+-=.++...+++
T Consensus 3 lK~~ll~l~~a~~~~~~~~~~~~~~~~~----a~~~~~~~~~~~~vy~s~r~~p~kyi~PG~~~l~~Fv 67 (248)
T d2r6gf1 3 LKWSVLGLLGLLVGYLVVLMYAQGEYLF----AITTLILSSAGLYIFANRKAYAWRYVYPGMAGMGLFV 67 (248)
T ss_dssp CTHHHHHHHHHHHHHTHHHHHGGGCHHH----HHHHHHHHHHHHHHHSSSCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcchHHH----HHHHHHHHHheEEEEEccCccceehhhhHHHHHHHHH
Confidence 3788999999999988777655322221 2245667778889999999998888865555554443
No 2
>d1rk8b_ d.232.1.1 (B:) Mago nashi protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=5.78 E-value=65 Score=25.31 Aligned_cols=14 Identities=57% Similarity=0.831 Sum_probs=3.4
Q ss_pred cccccCCCCCCCch
Q 019709 55 NYYHNNSNYKNNNV 68 (337)
Q Consensus 55 ~~~~~~~~~~~~~~ 68 (337)
--|-|||||||.+-
T Consensus 30 lrYaNnSnYknd~~ 43 (141)
T d1rk8b_ 30 LRYANNSNYKNDTM 43 (141)
T ss_dssp EEEEC--------C
T ss_pred eeeecccCccchhh
Confidence 34678999999763
No 3
>d1y0na_ d.291.1.1 (A:) Hypothetical UPF0270 protein PA3463 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=4.00 E-value=1.7e+02 Score=20.62 Aligned_cols=16 Identities=6% Similarity=0.283 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHhHHH
Q 019709 281 LQAADTVLKEVIFLDA 296 (337)
Q Consensus 281 p~AlSnV~kE~~F~~~ 296 (337)
+-++.|++||+++|+.
T Consensus 12 ~etL~~lIeeFv~REG 27 (78)
T d1y0na_ 12 ADTLNNLLEDFVTREG 27 (78)
T ss_dssp HHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHhccC
Confidence 5678999999999874
No 4
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=3.45 E-value=2.6e+02 Score=23.29 Aligned_cols=59 Identities=15% Similarity=0.102 Sum_probs=35.9
Q ss_pred HHHHHHHHhhhhhHHHHHHHhCCCC-ChhHHHHHHhhhhHHHHHHHHHHH-HHhcCc-cchh
Q 019709 119 IAAAVTVLLGVGNRVLYKLALVPLK-HYPFFLAQLATFGYVAVYFSILYL-RYHAGI-VTDE 177 (337)
Q Consensus 119 i~~i~~Vi~G~~N~Vl~Kl~~~~~~-nYp~Fl~q~~t~~y~~vyf~il~~-r~~~~~-it~e 177 (337)
++++.++++...|-|..-....|++ -+|..+-.+....|.++|...+-+ .|..+. .+||
T Consensus 30 ~a~~~~~~~~~~~~vy~s~r~~p~kyi~PG~~~l~~Fvi~Pi~yT~~iaFTNy~tgh~ltk~ 91 (248)
T d2r6gf1 30 FAITTLILSSAGLYIFANRKAYAWRYVYPGMAGMGLFVLFPLVCTIAIAFTNYSSTNQLTFE 91 (248)
T ss_dssp HHHHHHHHHHHHHHHHSSSCCTTHHHHHHHHHHHHHHTHHHHHHHHHGGGBCCSSTTCBCHH
T ss_pred HHHHHHHHHHheEEEEEccCccceehhhhHHHHHHHHHHHhheeEEEEEEEEcCCCccccHH
Confidence 4455666667777776655555554 666666666667777777665533 564443 3444
No 5
>d2bvca2 d.128.1.1 (A:105-478) Glutamine synthetase, C-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=3.43 E-value=1.6e+02 Score=26.00 Aligned_cols=30 Identities=30% Similarity=0.309 Sum_probs=22.5
Q ss_pred ccccccccccCCCccccCCCCCCCCCceeee
Q 019709 3 SCYSRLTAGSAASHSLLQSPKPSPKAPVSCY 33 (337)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 33 (337)
.+||||..|..+|...+-.. .|+...+-++
T Consensus 221 NSY~Rl~~~~~ap~~~~Wg~-~nR~~~iRi~ 250 (374)
T d2bvca2 221 NSYKRLVPGYEAPINLVYSQ-RNRSACVRIP 250 (374)
T ss_dssp THHHHSSTTSSSCSBCCEEE-TCTTSSEEEC
T ss_pred chhhhcCCCCccceEEeecc-Cccccceeec
Confidence 57999999999988776665 5666666554
No 6
>d2i5nh2 f.23.10.1 (H:1-36) Photosystem II reaction centre subunit H, transmembrane region {Rhodopseudomonas viridis [TaxId: 1079]}
Probab=2.84 E-value=3.5e+02 Score=15.81 Aligned_cols=23 Identities=22% Similarity=0.394 Sum_probs=15.0
Q ss_pred cccccHHHHhcchhHHHHHHHHH
Q 019709 206 ILSGASIPILSQTFLVWQILLSI 228 (337)
Q Consensus 206 ytsgs~~~LL~q~~IP~tmIlS~ 228 (337)
++.......-.|+.+.||+++-+
T Consensus 9 hldiaqlvwyaqwlviwtvvlly 31 (36)
T d2i5nh2 9 HLDIAQLVWYAQWLVIWTVVLLY 31 (36)
T ss_dssp GCBHHHHHHHHHHHHHHHHHHHT
T ss_pred hccHHHHHHHHHHHHHHHHHHHh
Confidence 44444445556888888887754
No 7
>d1q90a3 f.23.23.1 (A:248-292) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=2.75 E-value=6.5e+02 Score=15.59 Aligned_cols=30 Identities=30% Similarity=0.191 Sum_probs=25.4
Q ss_pred cchHHHHHHHHHhHHHHHHHHHHHHHhHHH
Q 019709 267 AGIFWSLLMIVSFLLQAADTVLKEVIFLDA 296 (337)
Q Consensus 267 ~~vlw~lL~llS~ip~AlSnV~kE~~F~~~ 296 (337)
+.+.|.++++++.++.-+--|+|-+=|.+.
T Consensus 3 ~Rv~gll~F~~~v~laQi~LVLKKKQfEKV 32 (45)
T d1q90a3 3 ARIQGLLVFFSFVLLTQVLLVLKKKQFEKV 32 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888999999999999999999888765
No 8
>d1vlaa_ d.227.1.2 (A:) Hypothetical protein TM0919 {Thermotoga maritima [TaxId: 2336]}
Probab=2.74 E-value=4.3e+02 Score=18.75 Aligned_cols=31 Identities=16% Similarity=0.091 Sum_probs=16.7
Q ss_pred cccccccchHHHHHHHHHHHhhhhhHHHHHH
Q 019709 107 ISKSNDRRVEIVIAAAVTVLLGVGNRVLYKL 137 (337)
Q Consensus 107 ~~~~~~~~~~v~i~~i~~Vi~G~~N~Vl~Kl 137 (337)
|.+++-.-..+.++.++-....+...++-|+
T Consensus 37 G~~~g~~P~elllaala~C~~~~~~~~a~~~ 67 (144)
T d1vlaa_ 37 GKDAAPRPLELVLTGLMGCTGMDVVSILRKM 67 (144)
T ss_dssp CCSCSCCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCcCHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3444555566666555555555555555444
No 9
>d1ml8a_ d.227.1.2 (A:) Hypothetical protein in CRP region {Escherichia coli [TaxId: 562]}
Probab=2.70 E-value=7.2e+02 Score=17.23 Aligned_cols=54 Identities=17% Similarity=0.006 Sum_probs=25.4
Q ss_pred ccCccccccccchhhcccccceeeeeccccccccchHHHHHHHHHHHhhhhhHHHHHH
Q 019709 80 RSDGHEAAVGDLVDKRKSGERTVEFNVISKSNDRRVEIVIAAAVTVLLGVGNRVLYKL 137 (337)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~i~~Vi~G~~N~Vl~Kl 137 (337)
+|.|+.++.|+. .++..+..+..+...+-+-..+.+..++-....+...++-|+
T Consensus 6 ~~~~~~~~~~~~----~~G~~i~~D~gg~~~gp~P~elllaal~~C~~~~~~~~a~~~ 59 (134)
T d1ml8a_ 6 KWVEGLTFLGES----ASGHQILMDGNSGDKAPSPMEMVLMAAGGCSAIDVVSILQKG 59 (134)
T ss_dssp EEEETTEEEEEC----TTSCEEEEETTTTSSSCCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEeCCcEEEEEc----CCCCEEEEeCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHc
Confidence 454444444433 223334444334445555566655555555545555444444
No 10
>d2vcha1 c.87.1.10 (A:6-476) Hydroquinone glucosyltransferase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=2.26 E-value=3.6e+02 Score=21.96 Aligned_cols=32 Identities=6% Similarity=0.085 Sum_probs=26.2
Q ss_pred CCCeEEEee-hhhHHHHHHHHhhhccccccccCCC
Q 019709 303 GVDLFVVNS-YGSAFQVSFVYMPSSTFSVKIMGYS 336 (337)
Q Consensus 303 ~ldif~vn~-w~s~fQ~l~~~lllPi~slp~~g~~ 336 (337)
++++|+=.| ++|+.+++ .-=.|++.+|++|+|
T Consensus 352 ~~~~fVtHGG~gS~~EAl--~~GvP~v~~P~~~DQ 384 (471)
T d2vcha1 352 STGGFLTHCGWNSTLESV--VSGIPLIAWPLYAEQ 384 (471)
T ss_dssp TEEEEEECCCHHHHHHHH--HHTCCEEECCCSTTH
T ss_pred cCCEEEecCCccHHHHHH--HcCCCEEEccccccc
Confidence 378888777 88888865 566899999999987
Done!