Query 019711
Match_columns 337
No_of_seqs 349 out of 1880
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 03:56:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019711.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019711hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11752 putative S-transferas 99.8 1.1E-20 2.3E-25 178.0 9.8 170 111-284 15-213 (264)
2 KOG0868 Glutathione S-transfer 99.8 6.5E-21 1.4E-25 166.4 4.4 153 139-293 4-178 (217)
3 cd03041 GST_N_2GST_N GST_N fam 99.8 8.8E-20 1.9E-24 140.3 8.3 77 140-217 1-77 (77)
4 PRK09481 sspA stringent starva 99.8 2.8E-20 6E-25 168.8 5.4 158 140-304 10-190 (211)
5 PLN02473 glutathione S-transfe 99.8 5.9E-20 1.3E-24 166.2 6.2 165 139-305 1-200 (214)
6 COG0625 Gst Glutathione S-tran 99.8 2E-19 4.4E-24 162.7 6.6 164 141-305 1-193 (211)
7 PRK13972 GSH-dependent disulfi 99.8 7E-19 1.5E-23 159.8 7.7 163 140-304 1-193 (215)
8 cd03052 GST_N_GDAP1 GST_N fami 99.7 4.3E-18 9.4E-23 130.0 8.6 72 141-214 1-73 (73)
9 cd03045 GST_N_Delta_Epsilon GS 99.7 5.1E-18 1.1E-22 128.4 8.8 73 141-215 1-74 (74)
10 KOG0867 Glutathione S-transfer 99.7 3.8E-18 8.2E-23 157.4 7.2 171 139-313 1-204 (226)
11 PLN02395 glutathione S-transfe 99.7 4E-18 8.6E-23 154.2 6.7 163 139-304 1-198 (215)
12 cd03048 GST_N_Ure2p_like GST_N 99.7 2.9E-17 6.3E-22 126.9 9.3 79 140-219 1-81 (81)
13 PRK15113 glutathione S-transfe 99.7 3E-17 6.5E-22 149.2 10.8 163 138-304 3-196 (214)
14 cd03059 GST_N_SspA GST_N famil 99.7 2.6E-17 5.7E-22 124.1 8.6 73 141-217 1-73 (73)
15 PRK10387 glutaredoxin 2; Provi 99.7 1.3E-17 2.8E-22 150.2 8.0 78 141-223 1-79 (210)
16 PF13417 GST_N_3: Glutathione 99.7 2.1E-17 4.5E-22 126.3 7.1 73 143-219 1-73 (75)
17 cd03050 GST_N_Theta GST_N fami 99.7 5.6E-17 1.2E-21 123.8 8.8 75 141-217 1-76 (76)
18 cd03053 GST_N_Phi GST_N family 99.7 8.3E-17 1.8E-21 122.5 9.1 74 141-216 2-76 (76)
19 cd03056 GST_N_4 GST_N family, 99.7 9.3E-17 2E-21 120.7 8.8 72 141-214 1-73 (73)
20 cd03051 GST_N_GTT2_like GST_N 99.7 8.4E-17 1.8E-21 121.0 8.4 73 141-214 1-74 (74)
21 PRK10542 glutathionine S-trans 99.7 3.1E-17 6.8E-22 146.7 5.8 160 141-304 1-185 (201)
22 cd03058 GST_N_Tau GST_N family 99.7 1.4E-16 3.1E-21 121.0 8.5 73 141-217 1-74 (74)
23 TIGR01262 maiA maleylacetoacet 99.7 3.3E-17 7.2E-22 147.5 4.2 167 142-312 1-198 (210)
24 PLN02378 glutathione S-transfe 99.7 4.5E-17 9.7E-22 148.3 4.7 172 146-332 17-209 (213)
25 cd03047 GST_N_2 GST_N family, 99.7 3.4E-16 7.3E-21 118.7 8.7 72 141-214 1-73 (73)
26 cd03057 GST_N_Beta GST_N famil 99.7 4.1E-16 8.9E-21 119.2 8.5 76 141-218 1-77 (77)
27 cd03060 GST_N_Omega_like GST_N 99.6 6.3E-16 1.4E-20 116.7 8.3 69 142-213 2-70 (71)
28 TIGR02182 GRXB Glutaredoxin, G 99.6 1.6E-16 3.4E-21 144.4 6.0 158 142-305 1-201 (209)
29 cd03076 GST_N_Pi GST_N family, 99.6 4.2E-16 9E-21 118.6 7.0 73 140-216 1-73 (73)
30 cd03040 GST_N_mPGES2 GST_N fam 99.6 7.3E-16 1.6E-20 117.8 7.9 75 140-218 1-77 (77)
31 cd03042 GST_N_Zeta GST_N famil 99.6 1E-15 2.3E-20 115.1 8.4 72 141-214 1-73 (73)
32 cd03044 GST_N_EF1Bgamma GST_N 99.6 1.1E-15 2.5E-20 116.6 8.7 73 142-215 2-74 (75)
33 cd03046 GST_N_GTT1_like GST_N 99.6 1.3E-15 2.9E-20 115.6 8.7 75 141-218 1-76 (76)
34 cd03037 GST_N_GRX2 GST_N famil 99.6 9.6E-16 2.1E-20 115.5 7.7 71 141-215 1-71 (71)
35 cd03055 GST_N_Omega GST_N fami 99.6 2.6E-15 5.7E-20 118.7 10.0 77 135-214 13-89 (89)
36 cd03061 GST_N_CLIC GST_N famil 99.6 2.5E-15 5.4E-20 119.8 9.5 70 147-220 20-89 (91)
37 TIGR00862 O-ClC intracellular 99.6 2E-16 4.3E-21 146.9 3.7 160 146-314 16-216 (236)
38 PRK10357 putative glutathione 99.6 3.9E-16 8.3E-21 140.0 5.1 160 141-304 1-188 (202)
39 cd03049 GST_N_3 GST_N family, 99.6 4.2E-15 9.2E-20 112.4 8.0 71 141-214 1-73 (73)
40 cd03039 GST_N_Sigma_like GST_N 99.6 2.5E-15 5.3E-20 113.5 6.6 72 141-215 1-72 (72)
41 cd03038 GST_N_etherase_LigE GS 99.6 2.7E-15 5.8E-20 116.9 7.0 69 147-218 14-84 (84)
42 cd03080 GST_N_Metaxin_like GST 99.6 4.1E-15 8.9E-20 113.6 7.3 68 140-218 1-75 (75)
43 PF13409 GST_N_2: Glutathione 99.6 3.1E-15 6.6E-20 113.1 5.9 68 148-216 1-70 (70)
44 PF02798 GST_N: Glutathione S- 99.6 1.2E-14 2.5E-19 111.7 7.4 74 139-215 1-76 (76)
45 PLN02817 glutathione dehydroge 99.5 3.7E-15 7.9E-20 140.7 5.4 158 146-314 70-247 (265)
46 cd03075 GST_N_Mu GST_N family, 99.5 2.4E-14 5.1E-19 111.7 8.2 74 142-217 2-82 (82)
47 cd00570 GST_N_family Glutathio 99.5 3.7E-14 8.1E-19 103.5 8.6 71 141-214 1-71 (71)
48 cd03041 GST_N_2GST_N GST_N fam 99.5 2.6E-14 5.6E-19 109.8 7.4 76 260-335 2-77 (77)
49 KOG0406 Glutathione S-transfer 99.5 3.3E-14 7.1E-19 130.6 9.1 186 139-335 8-223 (231)
50 cd03077 GST_N_Alpha GST_N fami 99.5 6E-14 1.3E-18 108.5 8.3 71 141-218 2-77 (79)
51 cd03043 GST_N_1 GST_N family, 99.5 1.2E-13 2.6E-18 105.1 7.7 68 145-214 6-73 (73)
52 cd03054 GST_N_Metaxin GST_N fa 99.4 2.6E-13 5.7E-18 102.5 7.0 65 141-216 1-72 (72)
53 PTZ00057 glutathione s-transfe 99.3 2.1E-12 4.5E-17 116.7 7.7 157 140-304 4-187 (205)
54 cd03048 GST_N_Ure2p_like GST_N 99.3 3.7E-12 8E-17 98.2 7.8 77 260-337 2-81 (81)
55 PF13417 GST_N_3: Glutathione 99.3 3E-12 6.6E-17 97.7 6.7 73 262-337 1-73 (75)
56 TIGR02190 GlrX-dom Glutaredoxi 99.3 9.6E-12 2.1E-16 96.1 8.2 74 137-214 6-79 (79)
57 cd03059 GST_N_SspA GST_N famil 99.3 1E-11 2.2E-16 93.4 7.2 73 260-335 1-73 (73)
58 cd03045 GST_N_Delta_Epsilon GS 99.3 8.8E-12 1.9E-16 94.0 6.7 72 260-333 1-74 (74)
59 cd03052 GST_N_GDAP1 GST_N fami 99.3 1.2E-11 2.6E-16 94.3 6.6 71 260-332 1-73 (73)
60 cd03058 GST_N_Tau GST_N family 99.2 2.3E-11 4.9E-16 92.2 7.0 73 260-335 1-74 (74)
61 cd03061 GST_N_CLIC GST_N famil 99.2 3.8E-11 8.3E-16 95.7 7.9 69 265-336 19-87 (91)
62 cd03029 GRX_hybridPRX5 Glutare 99.2 6.2E-11 1.4E-15 89.6 8.3 71 140-214 2-72 (72)
63 PRK10638 glutaredoxin 3; Provi 99.2 5.3E-11 1.2E-15 92.7 7.6 74 138-214 1-74 (83)
64 cd03050 GST_N_Theta GST_N fami 99.2 5.1E-11 1.1E-15 90.7 7.2 74 260-335 1-76 (76)
65 PRK09481 sspA stringent starva 99.2 4.1E-11 9E-16 108.6 7.4 75 259-336 10-84 (211)
66 cd03053 GST_N_Phi GST_N family 99.2 8E-11 1.7E-15 89.4 6.6 73 260-334 2-76 (76)
67 cd03060 GST_N_Omega_like GST_N 99.2 8.7E-11 1.9E-15 88.4 6.7 69 261-331 2-70 (71)
68 cd03037 GST_N_GRX2 GST_N famil 99.2 7.6E-11 1.7E-15 88.6 6.4 71 260-333 1-71 (71)
69 PF13409 GST_N_2: Glutathione 99.1 6.5E-11 1.4E-15 89.4 5.8 67 267-334 1-70 (70)
70 cd03051 GST_N_GTT2_like GST_N 99.1 8.4E-11 1.8E-15 88.0 6.2 72 260-332 1-74 (74)
71 cd03047 GST_N_2 GST_N family, 99.1 9.4E-11 2E-15 88.7 6.5 70 261-332 2-73 (73)
72 COG0625 Gst Glutathione S-tran 99.1 1E-10 2.2E-15 105.8 7.3 76 261-337 2-78 (211)
73 PRK15113 glutathione S-transfe 99.1 9.7E-11 2.1E-15 106.4 7.2 77 258-336 4-84 (214)
74 cd03056 GST_N_4 GST_N family, 99.1 1.5E-10 3.2E-15 86.7 7.0 71 260-332 1-73 (73)
75 cd03040 GST_N_mPGES2 GST_N fam 99.1 1.7E-10 3.8E-15 87.9 6.8 74 260-336 2-77 (77)
76 cd03046 GST_N_GTT1_like GST_N 99.1 2.3E-10 4.9E-15 86.6 7.1 73 261-336 2-76 (76)
77 COG2999 GrxB Glutaredoxin 2 [P 99.1 8.7E-11 1.9E-15 103.1 5.1 77 141-221 1-77 (215)
78 cd03079 GST_N_Metaxin2 GST_N f 99.1 2.6E-10 5.7E-15 87.5 7.2 64 141-216 11-74 (74)
79 cd03057 GST_N_Beta GST_N famil 99.1 2.7E-10 5.8E-15 86.8 7.2 74 261-336 2-77 (77)
80 KOG4420 Uncharacterized conser 99.1 8.1E-11 1.8E-15 108.7 4.0 82 136-219 22-104 (325)
81 cd03044 GST_N_EF1Bgamma GST_N 99.1 4.3E-10 9.4E-15 85.6 7.4 72 261-333 2-74 (75)
82 cd03076 GST_N_Pi GST_N family, 99.0 2E-10 4.3E-15 87.2 4.5 72 260-334 2-73 (73)
83 cd03049 GST_N_3 GST_N family, 99.0 4.5E-10 9.8E-15 84.7 6.3 71 260-332 1-73 (73)
84 cd03039 GST_N_Sigma_like GST_N 99.0 1.8E-10 4E-15 86.7 4.1 71 261-333 2-72 (72)
85 PRK10387 glutaredoxin 2; Provi 99.0 4E-10 8.6E-15 101.3 7.0 75 260-337 1-75 (210)
86 PLN02473 glutathione S-transfe 99.0 4.9E-10 1.1E-14 101.3 7.5 75 260-336 3-79 (214)
87 cd03027 GRX_DEP Glutaredoxin ( 99.0 8.1E-10 1.8E-14 83.7 7.1 69 140-211 2-70 (73)
88 cd02066 GRX_family Glutaredoxi 99.0 1E-09 2.3E-14 80.8 7.2 70 140-212 1-70 (72)
89 PRK13972 GSH-dependent disulfi 99.0 6.9E-10 1.5E-14 100.7 7.5 76 260-336 2-84 (215)
90 cd03055 GST_N_Omega GST_N fami 99.0 6E-10 1.3E-14 87.9 6.1 74 257-332 16-89 (89)
91 PLN02378 glutathione S-transfe 99.0 8.8E-10 1.9E-14 100.3 7.9 70 264-336 16-85 (213)
92 cd03042 GST_N_Zeta GST_N famil 99.0 9.4E-10 2E-14 82.4 6.5 71 260-332 1-73 (73)
93 TIGR02196 GlrX_YruB Glutaredox 99.0 1.4E-09 3.1E-14 80.6 7.0 71 140-213 1-73 (74)
94 cd03038 GST_N_etherase_LigE GS 99.0 9.9E-10 2.2E-14 85.4 5.7 69 266-336 14-84 (84)
95 cd03080 GST_N_Metaxin_like GST 99.0 8.9E-10 1.9E-14 83.9 5.3 60 267-336 16-75 (75)
96 COG0695 GrxC Glutaredoxin and 99.0 3.1E-09 6.7E-14 82.7 8.3 75 139-215 1-76 (80)
97 PRK11200 grxA glutaredoxin 1; 99.0 2.6E-09 5.7E-14 83.4 7.7 77 139-218 1-84 (85)
98 cd03418 GRX_GRXb_1_3_like Glut 98.9 2.9E-09 6.3E-14 80.5 7.4 71 141-214 2-73 (75)
99 PRK11752 putative S-transferas 98.9 1.9E-09 4.2E-14 101.6 7.9 79 257-336 42-130 (264)
100 KOG1422 Intracellular Cl- chan 98.9 1.1E-09 2.4E-14 98.5 5.8 138 147-291 19-168 (221)
101 TIGR02183 GRXA Glutaredoxin, G 98.9 4.2E-09 9E-14 82.8 8.1 75 141-218 2-83 (86)
102 TIGR02182 GRXB Glutaredoxin, G 98.9 2.7E-09 5.8E-14 96.9 7.5 73 261-336 1-73 (209)
103 PF02798 GST_N: Glutathione S- 98.9 3.2E-09 6.9E-14 81.4 6.8 64 269-333 10-76 (76)
104 cd00570 GST_N_family Glutathio 98.9 3.1E-09 6.6E-14 77.2 6.4 70 261-332 2-71 (71)
105 PLN02907 glutamate-tRNA ligase 98.9 1E-09 2.2E-14 116.4 5.1 141 139-304 1-154 (722)
106 KOG1695 Glutathione S-transfer 98.9 3.1E-09 6.7E-14 96.8 7.4 77 138-218 1-77 (206)
107 cd03075 GST_N_Mu GST_N family, 98.9 3.2E-09 6.9E-14 82.7 6.3 72 262-335 3-82 (82)
108 KOG3029 Glutathione S-transfer 98.9 2.4E-09 5.2E-14 100.1 6.6 71 139-215 89-159 (370)
109 TIGR00862 O-ClC intracellular 98.9 3.5E-09 7.5E-14 98.6 7.7 69 265-336 16-84 (236)
110 cd03043 GST_N_1 GST_N family, 98.9 4.9E-09 1.1E-13 79.7 6.8 67 264-332 6-73 (73)
111 KOG0868 Glutathione S-transfer 98.9 2.4E-09 5.2E-14 94.2 5.7 77 259-337 5-84 (217)
112 cd03077 GST_N_Alpha GST_N fami 98.9 6E-09 1.3E-13 80.4 7.1 70 261-336 3-77 (79)
113 TIGR02200 GlrX_actino Glutared 98.9 8.7E-09 1.9E-13 77.7 7.5 73 140-214 1-76 (77)
114 cd02976 NrdH NrdH-redoxin (Nrd 98.9 8.3E-09 1.8E-13 76.4 7.1 63 140-205 1-63 (73)
115 PRK10542 glutathionine S-trans 98.8 4.8E-09 1E-13 93.7 6.5 74 261-336 2-78 (201)
116 TIGR01262 maiA maleylacetoacet 98.8 7.1E-09 1.5E-13 93.2 7.3 73 262-336 2-77 (210)
117 PHA03050 glutaredoxin; Provisi 98.8 1.2E-08 2.6E-13 83.9 7.5 71 139-211 13-88 (108)
118 KOG0406 Glutathione S-transfer 98.8 7.8E-09 1.7E-13 95.3 6.9 76 258-336 8-84 (231)
119 TIGR02181 GRX_bact Glutaredoxi 98.8 1.3E-08 2.8E-13 78.0 6.8 72 141-215 1-72 (79)
120 PLN02395 glutathione S-transfe 98.8 1.1E-08 2.4E-13 92.4 7.5 74 260-336 3-78 (215)
121 KOG0867 Glutathione S-transfer 98.8 1.1E-08 2.3E-13 94.5 7.1 76 259-336 2-79 (226)
122 PRK10357 putative glutathione 98.8 1E-08 2.2E-13 91.9 6.8 75 260-336 1-75 (202)
123 PLN02817 glutathione dehydroge 98.8 1.4E-08 3.1E-13 96.0 7.9 71 264-337 69-139 (265)
124 PRK10329 glutaredoxin-like pro 98.8 2E-08 4.3E-13 78.3 6.8 59 139-201 1-59 (81)
125 cd03419 GRX_GRXh_1_2_like Glut 98.8 2.2E-08 4.7E-13 76.8 6.7 74 140-215 1-76 (82)
126 TIGR02189 GlrX-like_plant Glut 98.7 3E-08 6.5E-13 80.2 7.1 74 138-213 7-82 (99)
127 cd03054 GST_N_Metaxin GST_N fa 98.7 2.2E-08 4.8E-13 75.3 5.2 58 267-334 15-72 (72)
128 PF00462 Glutaredoxin: Glutare 98.7 2.1E-08 4.6E-13 73.0 4.0 59 141-202 1-59 (60)
129 TIGR00365 monothiol glutaredox 98.7 9.7E-08 2.1E-12 76.9 7.9 74 138-214 11-89 (97)
130 TIGR02194 GlrX_NrdH Glutaredox 98.6 5.7E-08 1.2E-12 73.5 5.7 54 141-196 1-54 (72)
131 TIGR02180 GRX_euk Glutaredoxin 98.6 1.1E-07 2.3E-12 73.0 6.7 73 141-215 1-77 (84)
132 cd03028 GRX_PICOT_like Glutare 98.6 1.4E-07 3.1E-12 74.7 7.5 74 138-214 7-85 (90)
133 PTZ00057 glutathione s-transfe 98.6 6.1E-08 1.3E-12 87.6 6.1 75 260-336 5-84 (205)
134 cd03078 GST_N_Metaxin1_like GS 98.5 3.8E-07 8.1E-12 69.7 6.6 58 148-216 15-72 (73)
135 TIGR02190 GlrX-dom Glutaredoxi 98.5 4.3E-07 9.3E-12 70.0 6.5 75 255-332 5-79 (79)
136 cd03079 GST_N_Metaxin2 GST_N f 98.5 4E-07 8.6E-12 69.9 6.2 61 265-334 14-74 (74)
137 cd03029 GRX_hybridPRX5 Glutare 98.3 1.8E-06 3.8E-11 65.1 6.1 71 259-332 2-72 (72)
138 COG2999 GrxB Glutaredoxin 2 [P 98.3 7.3E-07 1.6E-11 78.7 4.0 74 260-336 1-74 (215)
139 PRK10824 glutaredoxin-4; Provi 98.2 3.6E-06 7.8E-11 70.0 7.4 74 138-214 14-92 (115)
140 KOG4420 Uncharacterized conser 98.2 1.8E-06 4E-11 80.3 4.2 77 258-336 25-103 (325)
141 PRK10638 glutaredoxin 3; Provi 98.1 5.8E-06 1.2E-10 64.2 5.6 72 259-332 3-74 (83)
142 PRK12759 bifunctional gluaredo 98.0 2.3E-05 4.9E-10 78.7 8.1 70 138-211 1-79 (410)
143 cd03031 GRX_GRX_like Glutaredo 98.0 2.7E-05 5.8E-10 67.6 7.5 70 141-213 2-81 (147)
144 KOG1752 Glutaredoxin and relat 97.9 3.2E-05 7E-10 63.2 7.3 75 138-214 13-89 (104)
145 TIGR02183 GRXA Glutaredoxin, G 97.9 2.5E-05 5.4E-10 61.2 6.5 75 260-336 2-83 (86)
146 TIGR02196 GlrX_YruB Glutaredox 97.9 1.8E-05 3.9E-10 58.3 5.4 71 260-332 2-74 (74)
147 PTZ00062 glutaredoxin; Provisi 97.9 2.6E-05 5.6E-10 71.2 7.4 73 138-213 112-189 (204)
148 KOG4244 Failed axon connection 97.9 3.1E-05 6.7E-10 72.4 7.4 79 135-224 40-126 (281)
149 PRK11200 grxA glutaredoxin 1; 97.8 4.6E-05 1E-09 59.2 6.5 75 260-336 3-84 (85)
150 cd02066 GRX_family Glutaredoxi 97.8 4.4E-05 9.5E-10 55.8 5.5 69 260-330 2-70 (72)
151 cd03418 GRX_GRXb_1_3_like Glut 97.8 4.9E-05 1.1E-09 57.1 5.5 71 260-332 2-73 (75)
152 cd03027 GRX_DEP Glutaredoxin ( 97.8 5.3E-05 1.2E-09 57.1 5.6 69 259-329 2-70 (73)
153 cd02973 TRX_GRX_like Thioredox 97.8 0.0001 2.2E-09 54.2 6.9 59 140-205 2-65 (67)
154 COG0695 GrxC Glutaredoxin and 97.7 6.6E-05 1.4E-09 58.3 5.7 72 259-332 2-75 (80)
155 cd02976 NrdH NrdH-redoxin (Nrd 97.7 4.2E-05 9.1E-10 56.2 4.3 69 260-328 2-70 (73)
156 PRK10329 glutaredoxin-like pro 97.7 7E-05 1.5E-09 58.3 5.5 74 259-333 2-75 (81)
157 cd03036 ArsC_like Arsenate Red 97.7 3.5E-05 7.7E-10 63.4 3.7 51 141-192 1-51 (111)
158 TIGR02200 GlrX_actino Glutared 97.6 9.2E-05 2E-09 55.5 4.9 73 260-333 2-77 (77)
159 TIGR02181 GRX_bact Glutaredoxi 97.6 0.00011 2.4E-09 56.0 5.3 71 260-332 1-71 (79)
160 KOG1695 Glutathione S-transfer 97.5 0.00013 2.7E-09 66.7 5.4 72 262-336 6-77 (206)
161 TIGR02194 GlrX_NrdH Glutaredox 97.5 0.00015 3.2E-09 54.6 4.8 69 260-329 1-70 (72)
162 KOG3029 Glutathione S-transfer 97.5 0.00013 2.8E-09 68.9 4.7 69 259-332 90-158 (370)
163 PRK01655 spxA transcriptional 97.5 0.00017 3.6E-09 61.3 5.0 44 141-185 2-45 (131)
164 cd02977 ArsC_family Arsenate R 97.5 0.00021 4.5E-09 57.9 5.2 47 141-188 1-47 (105)
165 PTZ00062 glutaredoxin; Provisi 97.4 0.0056 1.2E-07 55.9 14.9 155 141-330 21-188 (204)
166 cd03032 ArsC_Spx Arsenate Redu 97.4 0.00025 5.5E-09 58.6 5.4 33 141-173 2-34 (115)
167 cd03078 GST_N_Metaxin1_like GS 97.4 0.00045 9.8E-09 52.6 5.6 58 267-334 15-72 (73)
168 PHA03050 glutaredoxin; Provisi 97.3 0.00062 1.3E-08 55.9 6.8 71 257-329 12-88 (108)
169 COG4545 Glutaredoxin-related p 97.3 0.0006 1.3E-08 52.1 5.3 62 142-204 5-77 (85)
170 cd03419 GRX_GRXh_1_2_like Glut 97.2 0.00092 2E-08 50.8 6.3 72 260-333 2-76 (82)
171 TIGR01617 arsC_related transcr 97.2 0.00043 9.4E-09 57.3 4.5 42 141-183 1-42 (117)
172 TIGR00365 monothiol glutaredox 97.2 0.00095 2.1E-08 53.6 6.0 72 258-331 12-88 (97)
173 PRK12559 transcriptional regul 97.1 0.00078 1.7E-08 57.2 5.4 45 140-185 1-45 (131)
174 cd03028 GRX_PICOT_like Glutare 97.1 0.0012 2.5E-08 52.1 5.9 73 258-332 8-85 (90)
175 PRK13344 spxA transcriptional 97.1 0.00099 2.1E-08 56.7 5.6 43 141-184 2-44 (132)
176 TIGR02189 GlrX-like_plant Glut 97.1 0.0017 3.7E-08 52.3 6.4 72 257-330 7-81 (99)
177 KOG1422 Intracellular Cl- chan 97.0 0.002 4.3E-08 58.6 7.3 70 264-336 17-86 (221)
178 TIGR00412 redox_disulf_2 small 97.0 0.0042 9E-08 47.4 7.7 58 139-205 1-62 (76)
179 PF00462 Glutaredoxin: Glutare 97.0 0.0006 1.3E-08 49.3 2.8 54 261-314 2-55 (60)
180 TIGR02180 GRX_euk Glutaredoxin 96.9 0.0031 6.7E-08 47.9 6.6 71 261-333 2-77 (84)
181 PRK10026 arsenate reductase; P 96.9 0.0018 3.9E-08 55.8 5.6 47 138-185 1-47 (141)
182 cd03035 ArsC_Yffb Arsenate Red 96.9 0.0017 3.7E-08 53.0 5.1 44 141-185 1-44 (105)
183 cd03033 ArsC_15kD Arsenate Red 96.8 0.0022 4.7E-08 53.1 5.3 44 141-185 2-45 (113)
184 COG1393 ArsC Arsenate reductas 96.8 0.0023 5E-08 53.4 5.5 46 139-185 1-46 (117)
185 TIGR01616 nitro_assoc nitrogen 96.6 0.0048 1E-07 52.1 5.6 34 140-173 2-35 (126)
186 PRK10853 putative reductase; P 96.5 0.0045 9.7E-08 51.7 5.2 44 141-185 2-45 (118)
187 PF10568 Tom37: Outer mitochon 96.5 0.0089 1.9E-07 45.6 6.0 57 148-214 13-72 (72)
188 PF13192 Thioredoxin_3: Thiore 96.4 0.025 5.4E-07 43.0 8.2 59 139-206 1-63 (76)
189 PLN02907 glutamate-tRNA ligase 96.3 0.0057 1.2E-07 65.6 5.8 61 261-336 4-64 (722)
190 TIGR02187 GlrX_arch Glutaredox 96.3 0.1 2.2E-06 47.5 13.3 172 140-333 22-214 (215)
191 TIGR00411 redox_disulf_1 small 96.3 0.018 3.8E-07 43.5 6.8 54 140-196 2-59 (82)
192 cd03030 GRX_SH3BGR Glutaredoxi 96.2 0.012 2.7E-07 46.9 5.9 68 141-211 2-79 (92)
193 PRK10824 glutaredoxin-4; Provi 96.1 0.012 2.6E-07 49.0 5.4 72 258-331 15-91 (115)
194 cd03034 ArsC_ArsC Arsenate Red 96.1 0.012 2.5E-07 48.5 5.2 34 141-174 1-34 (112)
195 TIGR00014 arsC arsenate reduct 96.0 0.013 2.8E-07 48.4 5.2 34 141-174 1-34 (114)
196 cd03026 AhpF_NTD_C TRX-GRX-lik 96.0 0.027 5.9E-07 44.5 6.8 58 140-204 15-77 (89)
197 cd01659 TRX_superfamily Thiore 95.9 0.017 3.7E-07 39.3 4.7 54 141-196 1-59 (69)
198 PHA02125 thioredoxin-like prot 95.7 0.023 5E-07 43.0 5.1 51 141-196 2-52 (75)
199 COG0435 ECM4 Predicted glutath 95.7 0.012 2.5E-07 55.8 4.0 150 138-290 49-246 (324)
200 PF05768 DUF836: Glutaredoxin- 95.6 0.044 9.5E-07 42.3 6.4 51 140-196 1-55 (81)
201 KOG2903 Predicted glutathione 95.6 0.038 8.3E-07 52.0 7.0 152 139-291 36-247 (319)
202 PF11287 DUF3088: Protein of u 95.1 0.073 1.6E-06 43.9 6.3 68 148-219 23-109 (112)
203 COG0278 Glutaredoxin-related p 94.6 0.081 1.8E-06 42.9 5.4 74 138-215 14-93 (105)
204 KOG4244 Failed axon connection 94.2 0.049 1.1E-06 51.4 3.9 60 267-336 60-119 (281)
205 cd03031 GRX_GRX_like Glutaredo 94.2 0.11 2.4E-06 45.1 5.7 61 267-329 15-79 (147)
206 KOG1752 Glutaredoxin and relat 93.8 0.19 4.1E-06 41.1 6.0 72 257-330 13-87 (104)
207 TIGR01295 PedC_BrcD bacterioci 93.7 0.29 6.3E-06 40.8 7.2 64 138-201 24-101 (122)
208 PF03960 ArsC: ArsC family; I 93.5 0.1 2.2E-06 42.5 4.1 30 144-173 1-30 (110)
209 PRK12759 bifunctional gluaredo 93.0 0.17 3.8E-06 50.9 5.7 67 259-328 3-78 (410)
210 TIGR03140 AhpF alkyl hydropero 92.6 0.11 2.4E-06 53.6 3.7 71 139-216 119-198 (515)
211 PRK15317 alkyl hydroperoxide r 92.4 0.12 2.6E-06 53.4 3.7 73 139-218 118-199 (517)
212 cd02947 TRX_family TRX family; 91.8 0.79 1.7E-05 33.9 6.8 57 140-201 13-74 (93)
213 TIGR03143 AhpF_homolog putativ 91.8 0.43 9.3E-06 49.8 7.0 59 140-205 479-542 (555)
214 cd02975 PfPDO_like_N Pyrococcu 91.4 0.25 5.3E-06 40.5 3.8 52 140-196 24-81 (113)
215 KOG0911 Glutaredoxin-related p 90.8 0.48 1E-05 43.8 5.4 72 137-211 137-213 (227)
216 cd03036 ArsC_like Arsenate Red 90.6 0.19 4.1E-06 41.2 2.4 42 260-301 1-42 (111)
217 cd02973 TRX_GRX_like Thioredox 89.6 0.88 1.9E-05 32.9 5.1 57 260-322 3-64 (67)
218 PF00085 Thioredoxin: Thioredo 89.5 1.5 3.2E-05 33.8 6.7 74 139-215 19-102 (103)
219 TIGR02187 GlrX_arch Glutaredox 89.5 0.87 1.9E-05 41.4 6.0 59 140-201 136-197 (215)
220 cd02949 TRX_NTR TRX domain, no 88.7 1.6 3.4E-05 34.2 6.2 63 138-203 14-80 (97)
221 PF04908 SH3BGR: SH3-binding, 88.5 1.6 3.4E-05 35.4 6.2 70 139-211 1-85 (99)
222 cd02977 ArsC_family Arsenate R 87.9 0.56 1.2E-05 37.6 3.3 45 260-304 1-45 (105)
223 cd02951 SoxW SoxW family; SoxW 87.4 2.4 5.3E-05 34.6 6.9 65 138-202 15-98 (125)
224 PF10568 Tom37: Outer mitochon 86.6 2.2 4.7E-05 32.4 5.6 56 268-332 14-72 (72)
225 cd02953 DsbDgamma DsbD gamma f 86.4 1.7 3.7E-05 34.3 5.3 57 139-195 13-77 (104)
226 PF09635 MetRS-N: MetRS-N bind 86.3 0.36 7.8E-06 40.5 1.3 31 189-219 34-64 (122)
227 KOG3027 Mitochondrial outer me 86.3 1.1 2.3E-05 41.2 4.4 66 139-217 27-92 (257)
228 cd02955 SSP411 TRX domain, SSP 86.2 2.9 6.3E-05 35.0 6.8 66 141-206 19-97 (124)
229 PF09635 MetRS-N: MetRS-N bind 85.6 0.33 7.1E-06 40.7 0.7 30 307-336 34-63 (122)
230 cd02984 TRX_PICOT TRX domain, 85.4 2.2 4.7E-05 32.9 5.3 61 140-203 17-81 (97)
231 TIGR01068 thioredoxin thioredo 85.0 4.5 9.8E-05 30.8 7.0 58 141-201 18-79 (101)
232 PF13098 Thioredoxin_2: Thiore 84.8 0.94 2E-05 36.0 3.1 66 137-202 5-95 (112)
233 cd03032 ArsC_Spx Arsenate Redu 84.1 1.1 2.3E-05 36.8 3.2 35 260-294 2-36 (115)
234 TIGR01617 arsC_related transcr 83.5 1 2.3E-05 37.0 2.9 47 260-306 1-50 (117)
235 PRK01655 spxA transcriptional 83.5 1 2.2E-05 38.1 2.8 34 260-293 2-35 (131)
236 PTZ00051 thioredoxin; Provisio 81.0 1.7 3.6E-05 33.7 3.1 59 139-202 20-83 (98)
237 cd02996 PDI_a_ERp44 PDIa famil 80.9 5.7 0.00012 31.5 6.3 50 141-195 22-83 (108)
238 cd03030 GRX_SH3BGR Glutaredoxi 80.9 5.7 0.00012 31.6 6.1 58 270-329 18-79 (92)
239 cd02993 PDI_a_APS_reductase PD 80.6 7.6 0.00017 31.0 6.9 57 137-195 21-83 (109)
240 cd02963 TRX_DnaJ TRX domain, D 79.9 8.8 0.00019 30.9 7.1 58 139-201 26-90 (111)
241 PRK10996 thioredoxin 2; Provis 79.6 12 0.00027 31.5 8.2 63 138-203 53-119 (139)
242 cd02989 Phd_like_TxnDC9 Phosdu 79.3 2.5 5.5E-05 34.5 3.7 64 139-205 24-90 (113)
243 PHA02278 thioredoxin-like prot 78.8 8.3 0.00018 31.1 6.5 62 141-203 18-85 (103)
244 cd02994 PDI_a_TMX PDIa family, 78.2 17 0.00036 28.2 8.1 58 140-200 19-81 (101)
245 PRK09381 trxA thioredoxin; Pro 78.2 8.5 0.00018 30.4 6.4 61 140-203 24-88 (109)
246 PRK10877 protein disulfide iso 77.4 3.7 7.9E-05 38.1 4.6 27 136-162 106-132 (232)
247 cd02959 ERp19 Endoplasmic reti 76.7 6.8 0.00015 32.2 5.6 52 141-195 23-81 (117)
248 cd03020 DsbA_DsbC_DsbG DsbA fa 76.1 5.4 0.00012 35.5 5.2 35 137-171 77-113 (197)
249 PRK12559 transcriptional regul 75.9 3 6.4E-05 35.3 3.3 34 260-293 2-35 (131)
250 cd02985 TRX_CDSP32 TRX family, 75.2 14 0.0003 29.2 6.9 63 141-203 19-84 (103)
251 PF11287 DUF3088: Protein of u 75.2 12 0.00026 31.0 6.5 69 267-336 23-108 (112)
252 PRK13344 spxA transcriptional 74.4 3.6 7.9E-05 34.8 3.5 34 260-293 2-35 (132)
253 cd02948 TRX_NDPK TRX domain, T 73.8 6.6 0.00014 31.0 4.7 59 140-202 20-83 (102)
254 cd02950 TxlA TRX-like protein 73.4 17 0.00036 30.8 7.4 63 140-203 23-90 (142)
255 cd02957 Phd_like Phosducin (Ph 73.2 13 0.00029 29.8 6.4 61 141-205 28-91 (113)
256 TIGR03143 AhpF_homolog putativ 73.1 19 0.00041 37.6 9.1 53 259-315 479-536 (555)
257 cd02961 PDI_a_family Protein D 72.8 4.2 9.2E-05 30.6 3.2 54 139-195 17-76 (101)
258 COG3011 Predicted thiol-disulf 72.7 27 0.00058 30.0 8.3 77 139-217 8-87 (137)
259 PRK11657 dsbG disulfide isomer 72.5 7.5 0.00016 36.4 5.4 25 137-161 117-141 (251)
260 cd02997 PDI_a_PDIR PDIa family 72.3 12 0.00025 28.9 5.7 62 139-201 19-86 (104)
261 cd02956 ybbN ybbN protein fami 71.8 20 0.00043 27.4 6.9 59 140-201 15-77 (96)
262 cd03035 ArsC_Yffb Arsenate Red 71.4 4.8 0.0001 32.6 3.3 45 260-304 1-48 (105)
263 cd03004 PDI_a_ERdj5_C PDIa fam 70.6 16 0.00034 28.5 6.2 51 140-195 22-78 (104)
264 TIGR01126 pdi_dom protein disu 70.6 4.2 9.2E-05 31.2 2.8 55 137-194 13-73 (102)
265 KOG2824 Glutaredoxin-related p 70.4 6.3 0.00014 37.6 4.3 74 135-211 127-210 (281)
266 cd02952 TRP14_like Human TRX-r 69.9 18 0.00038 30.1 6.5 60 147-206 38-106 (119)
267 TIGR00411 redox_disulf_1 small 69.4 9.3 0.0002 28.2 4.4 71 260-333 3-80 (82)
268 cd03002 PDI_a_MPD1_like PDI fa 69.1 13 0.00027 29.1 5.4 55 140-195 21-79 (109)
269 cd02999 PDI_a_ERp44_like PDIa 68.8 17 0.00037 28.7 6.0 56 138-195 19-77 (100)
270 TIGR02740 TraF-like TraF-like 68.6 24 0.00052 33.5 8.0 61 141-201 170-242 (271)
271 PHA03075 glutaredoxin-like pro 67.9 6 0.00013 33.0 3.2 35 138-172 2-36 (123)
272 cd03000 PDI_a_TMX3 PDIa family 67.9 13 0.00029 29.2 5.2 54 139-195 17-77 (104)
273 cd02954 DIM1 Dim1 family; Dim1 67.0 7.3 0.00016 32.3 3.6 59 141-202 18-80 (114)
274 PRK15317 alkyl hydroperoxide r 66.2 41 0.0009 34.6 9.8 71 259-333 119-196 (517)
275 cd02972 DsbA_family DsbA famil 65.3 7.5 0.00016 29.0 3.2 32 141-172 1-38 (98)
276 PF13728 TraF: F plasmid trans 64.4 35 0.00075 31.3 7.9 63 139-201 122-196 (215)
277 cd03023 DsbA_Com1_like DsbA fa 64.3 13 0.00027 30.7 4.7 25 138-162 6-30 (154)
278 PF04134 DUF393: Protein of un 64.2 9.6 0.00021 30.6 3.8 67 144-216 2-77 (114)
279 KOG3028 Translocase of outer m 63.8 39 0.00085 32.9 8.3 58 148-215 16-73 (313)
280 COG4545 Glutaredoxin-related p 63.8 16 0.00034 28.3 4.5 61 261-321 5-77 (85)
281 cd03033 ArsC_15kD Arsenate Red 63.8 7.3 0.00016 32.1 3.0 36 260-295 2-37 (113)
282 cd03003 PDI_a_ERdj5_N PDIa fam 63.7 22 0.00049 27.5 5.8 53 140-195 21-77 (101)
283 PF05768 DUF836: Glutaredoxin- 62.9 25 0.00055 26.7 5.8 53 260-315 2-56 (81)
284 cd01659 TRX_superfamily Thiore 62.7 13 0.00028 24.3 3.7 53 262-315 3-60 (69)
285 KOG2501 Thioredoxin, nucleored 62.4 16 0.00034 32.1 5.0 34 139-172 34-75 (157)
286 PTZ00443 Thioredoxin domain-co 61.8 35 0.00076 31.6 7.5 76 141-219 56-141 (224)
287 PRK00293 dipZ thiol:disulfide 61.6 31 0.00067 36.4 7.9 54 140-195 477-539 (571)
288 cd02965 HyaE HyaE family; HyaE 61.2 11 0.00025 31.0 3.7 65 138-205 28-98 (111)
289 cd03001 PDI_a_P5 PDIa family, 61.1 28 0.00061 26.7 5.9 53 140-195 21-77 (103)
290 cd02998 PDI_a_ERp38 PDIa famil 61.1 25 0.00054 26.9 5.6 55 139-195 20-80 (105)
291 PRK13728 conjugal transfer pro 60.4 22 0.00049 31.9 5.7 32 141-172 73-108 (181)
292 cd02970 PRX_like2 Peroxiredoxi 60.0 21 0.00046 29.3 5.3 51 146-197 33-88 (149)
293 cd02967 mauD Methylamine utili 59.3 24 0.00053 27.7 5.3 56 141-196 25-84 (114)
294 cd03008 TryX_like_RdCVF Trypar 57.9 71 0.0015 27.5 8.2 49 140-188 27-89 (146)
295 cd03009 TryX_like_TryX_NRX Try 57.9 28 0.0006 28.4 5.6 21 141-161 22-42 (131)
296 cd03005 PDI_a_ERp46 PDIa famil 56.8 29 0.00063 26.5 5.3 53 140-195 19-78 (102)
297 cd03189 GST_C_GTT1_like GST_C 54.4 1.5 3.3E-05 35.2 -2.6 41 264-304 69-115 (119)
298 cd02962 TMX2 TMX2 family; comp 54.1 44 0.00096 28.9 6.4 62 141-205 51-123 (152)
299 cd03006 PDI_a_EFP1_N PDIa fami 54.1 40 0.00087 27.5 5.9 54 139-195 31-89 (113)
300 TIGR02661 MauD methylamine deh 53.9 67 0.0014 28.4 7.7 30 140-169 77-110 (189)
301 COG0278 Glutaredoxin-related p 53.9 34 0.00074 27.9 5.2 61 264-326 26-87 (105)
302 cd02958 UAS UAS family; UAS is 53.7 68 0.0015 25.6 7.1 58 144-202 24-90 (114)
303 TIGR02738 TrbB type-F conjugat 53.5 77 0.0017 27.4 7.8 32 141-172 54-89 (153)
304 PF08534 Redoxin: Redoxin; In 53.0 20 0.00044 29.7 4.0 48 148-196 40-92 (146)
305 PLN02309 5'-adenylylsulfate re 51.7 65 0.0014 33.1 8.1 58 136-195 364-427 (457)
306 cd03019 DsbA_DsbA DsbA family, 51.7 22 0.00048 30.3 4.2 25 138-162 16-40 (178)
307 cd02987 Phd_like_Phd Phosducin 51.3 49 0.0011 29.2 6.4 61 141-205 87-150 (175)
308 TIGR00412 redox_disulf_2 small 50.5 70 0.0015 23.8 6.3 55 261-323 4-62 (76)
309 PF13192 Thioredoxin_3: Thiore 49.6 88 0.0019 23.2 6.7 52 266-324 8-63 (76)
310 cd02995 PDI_a_PDI_a'_C PDIa fa 49.6 51 0.0011 25.1 5.6 53 139-195 20-78 (104)
311 cd03200 GST_C_JTV1 GST_C famil 47.6 2.5 5.3E-05 33.5 -2.3 41 264-304 50-93 (96)
312 cd03188 GST_C_Beta GST_C famil 47.5 2.1 4.6E-05 33.7 -2.8 41 264-304 58-104 (114)
313 PRK03147 thiol-disulfide oxido 47.2 75 0.0016 26.9 6.8 21 140-160 64-84 (173)
314 cd03179 GST_C_1 GST_C family, 47.0 3.8 8.3E-05 31.8 -1.3 39 265-303 59-103 (105)
315 cd02964 TryX_like_family Trypa 46.4 67 0.0015 26.3 6.2 21 141-161 21-41 (132)
316 cd03017 PRX_BCP Peroxiredoxin 46.3 46 0.001 27.1 5.2 50 147-197 34-88 (140)
317 PF00578 AhpC-TSA: AhpC/TSA fa 45.5 24 0.00053 28.0 3.3 52 144-196 33-89 (124)
318 PF14595 Thioredoxin_9: Thiore 45.4 6.7 0.00015 33.0 -0.1 71 139-211 43-122 (129)
319 cd03011 TlpA_like_ScsD_MtbDsbE 45.3 62 0.0013 25.7 5.7 56 140-196 23-80 (123)
320 KOG0907 Thioredoxin [Posttrans 45.0 66 0.0014 26.1 5.7 63 138-205 21-89 (106)
321 PF13462 Thioredoxin_4: Thiore 44.7 18 0.00039 30.3 2.5 25 137-161 12-36 (162)
322 cd03184 GST_C_Omega GST_C fami 44.3 3.3 7.1E-05 33.8 -2.2 58 268-332 53-122 (124)
323 cd02971 PRX_family Peroxiredox 43.0 46 0.001 27.0 4.7 58 140-197 24-88 (140)
324 PF06110 DUF953: Eukaryotic pr 42.6 58 0.0013 27.2 5.1 59 147-207 36-106 (119)
325 TIGR01130 ER_PDI_fam protein d 42.4 76 0.0017 31.4 6.9 77 140-219 21-111 (462)
326 cd02992 PDI_a_QSOX PDIa family 42.2 68 0.0015 25.9 5.4 55 140-195 22-83 (114)
327 TIGR00424 APS_reduc 5'-adenyly 41.8 1E+02 0.0022 31.7 7.8 53 139-195 373-433 (463)
328 cd03024 DsbA_FrnE DsbA family, 41.6 30 0.00065 30.3 3.5 32 141-172 1-40 (201)
329 COG2143 Thioredoxin-related pr 41.2 98 0.0021 27.5 6.4 82 135-217 40-152 (182)
330 TIGR01616 nitro_assoc nitrogen 39.8 31 0.00068 28.9 3.1 35 259-293 2-36 (126)
331 PF06953 ArsD: Arsenical resis 39.6 53 0.0012 27.6 4.4 64 138-203 1-83 (123)
332 cd03026 AhpF_NTD_C TRX-GRX-lik 39.0 61 0.0013 25.2 4.5 57 260-322 16-77 (89)
333 PTZ00102 disulphide isomerase; 38.6 1.2E+02 0.0025 30.5 7.6 79 138-219 50-140 (477)
334 PF01323 DSBA: DSBA-like thior 38.0 33 0.00071 29.6 3.1 33 140-172 1-38 (193)
335 cd03207 GST_C_8 GST_C family, 36.6 3.7 7.9E-05 32.1 -2.9 41 264-304 45-90 (103)
336 cd02966 TlpA_like_family TlpA- 36.0 77 0.0017 23.8 4.7 24 139-162 21-44 (116)
337 cd03034 ArsC_ArsC Arsenate Red 36.0 42 0.00092 27.2 3.3 35 260-294 1-35 (112)
338 cd03018 PRX_AhpE_like Peroxire 35.4 70 0.0015 26.4 4.6 50 146-196 38-92 (149)
339 COG5494 Predicted thioredoxin/ 35.3 65 0.0014 29.9 4.5 74 137-216 9-87 (265)
340 PRK15412 thiol:disulfide inter 35.0 73 0.0016 28.0 4.9 55 141-196 72-129 (185)
341 PRK10853 putative reductase; P 34.1 41 0.0009 27.8 2.9 35 260-294 2-36 (118)
342 cd03180 GST_C_2 GST_C family, 33.7 7.6 0.00017 30.2 -1.5 41 264-304 58-104 (110)
343 PRK10026 arsenate reductase; P 33.7 45 0.00098 28.7 3.2 35 259-293 3-37 (141)
344 cd03204 GST_C_GDAP1 GST_C fami 33.6 4 8.6E-05 33.6 -3.2 37 268-304 58-105 (111)
345 cd04911 ACT_AKiii-YclM-BS_1 AC 33.5 37 0.0008 26.1 2.3 21 150-170 16-36 (76)
346 PRK13703 conjugal pilus assemb 33.3 1.9E+02 0.0042 27.2 7.6 63 139-201 145-219 (248)
347 PRK00522 tpx lipid hydroperoxi 33.3 84 0.0018 27.1 4.9 56 141-196 47-107 (167)
348 cd03012 TlpA_like_DipZ_like Tl 33.2 1.2E+02 0.0025 24.5 5.6 52 144-196 30-92 (126)
349 PTZ00056 glutathione peroxidas 33.1 1E+02 0.0022 27.7 5.5 73 141-217 43-129 (199)
350 TIGR02739 TraF type-F conjugat 33.0 1E+02 0.0022 29.2 5.7 63 139-201 152-226 (256)
351 cd03185 GST_C_Tau GST_C family 32.8 5.3 0.00011 32.2 -2.7 48 264-313 50-110 (126)
352 COG1393 ArsC Arsenate reductas 32.6 50 0.0011 27.4 3.2 37 259-295 2-38 (117)
353 cd02969 PRX_like1 Peroxiredoxi 32.4 1.1E+02 0.0023 26.2 5.5 22 141-162 29-50 (171)
354 KOG3425 Uncharacterized conser 31.8 86 0.0019 26.5 4.4 69 147-215 43-121 (128)
355 cd03206 GST_C_7 GST_C family, 31.5 5.8 0.00013 30.9 -2.5 41 264-304 48-94 (100)
356 TIGR00014 arsC arsenate reduct 31.4 56 0.0012 26.6 3.3 46 260-305 1-49 (114)
357 cd03183 GST_C_Theta GST_C fami 31.4 6 0.00013 32.1 -2.5 39 266-304 63-108 (126)
358 TIGR00385 dsbE periplasmic pro 31.1 82 0.0018 27.3 4.5 22 141-162 67-88 (173)
359 COG3019 Predicted metal-bindin 30.7 84 0.0018 27.2 4.2 69 139-217 26-104 (149)
360 cd03010 TlpA_like_DsbE TlpA-li 30.5 1.1E+02 0.0024 24.5 5.0 22 141-162 29-50 (127)
361 cd03177 GST_C_Delta_Epsilon GS 30.5 5.6 0.00012 31.9 -2.8 48 264-313 53-107 (118)
362 cd02988 Phd_like_VIAF Phosduci 30.4 1.7E+02 0.0038 26.1 6.6 58 142-205 107-167 (192)
363 cd02982 PDI_b'_family Protein 29.8 64 0.0014 24.7 3.3 53 140-195 15-73 (103)
364 cd03014 PRX_Atyp2cys Peroxired 29.2 1E+02 0.0022 25.3 4.6 58 140-197 28-90 (143)
365 cd03022 DsbA_HCCA_Iso DsbA fam 29.1 58 0.0012 28.1 3.2 31 141-171 1-35 (192)
366 KOG0190 Protein disulfide isom 28.5 1.4E+02 0.003 31.1 6.1 77 141-220 46-135 (493)
367 KOG0910 Thioredoxin-like prote 28.2 1.1E+02 0.0023 26.8 4.5 64 137-203 61-128 (150)
368 TIGR01295 PedC_BrcD bacterioci 28.1 85 0.0018 25.8 3.9 55 260-314 27-96 (122)
369 PRK09437 bcp thioredoxin-depen 27.5 1.3E+02 0.0029 25.0 5.1 53 141-196 33-94 (154)
370 cd03202 GST_C_etherase_LigE GS 27.0 7 0.00015 32.2 -2.9 41 264-304 73-121 (124)
371 PHA02125 thioredoxin-like prot 26.9 75 0.0016 23.4 3.1 50 261-314 3-52 (75)
372 cd03007 PDI_a_ERp29_N PDIa fam 26.2 3.2E+02 0.0068 22.6 6.9 77 140-216 21-115 (116)
373 smart00594 UAS UAS domain. 26.2 3.5E+02 0.0076 21.9 8.3 62 139-201 29-99 (122)
374 cd03178 GST_C_Ure2p_like GST_C 25.9 6.7 0.00015 30.9 -3.1 40 265-304 56-102 (113)
375 cd03182 GST_C_GTT2_like GST_C 25.8 9.1 0.0002 30.4 -2.4 41 264-304 64-111 (117)
376 cd02986 DLP Dim1 family, Dim1- 25.0 68 0.0015 26.6 2.7 49 144-195 21-73 (114)
377 cd03210 GST_C_Pi GST_C family, 24.6 7 0.00015 32.0 -3.3 37 268-304 57-100 (126)
378 cd03203 GST_C_Lambda GST_C fam 24.6 13 0.00028 30.3 -1.7 45 267-314 51-107 (120)
379 cd03209 GST_C_Mu GST_C family, 24.4 8 0.00017 31.3 -3.0 41 264-304 50-97 (121)
380 cd03025 DsbA_FrnE_like DsbA fa 24.2 75 0.0016 27.5 3.0 32 140-171 2-39 (193)
381 COG2761 FrnE Predicted dithiol 24.0 36 0.00078 31.7 0.9 61 138-219 5-69 (225)
382 cd02968 SCO SCO (an acronym fo 23.9 2.4E+02 0.0052 22.8 5.9 70 140-219 25-107 (142)
383 PF13410 GST_C_2: Glutathione 23.8 23 0.00051 25.3 -0.3 26 264-289 21-46 (69)
384 cd03196 GST_C_5 GST_C family, 23.8 8 0.00017 31.3 -3.1 41 264-304 56-105 (115)
385 cd03187 GST_C_Phi GST_C family 23.5 24 0.00051 27.8 -0.3 41 264-304 60-108 (118)
386 cd03208 GST_C_Alpha GST_C fami 23.4 7.6 0.00016 32.7 -3.4 38 267-304 59-103 (137)
387 cd03197 GST_C_mPGES2 GST_C fam 23.0 11 0.00023 32.9 -2.6 39 267-305 98-144 (149)
388 cd03186 GST_C_SspA GST_N famil 22.4 21 0.00045 27.9 -0.9 41 264-304 50-97 (107)
389 PF06053 DUF929: Domain of unk 22.2 77 0.0017 29.9 2.8 28 135-162 56-83 (249)
390 cd05295 MDH_like Malate dehydr 22.2 2.2E+02 0.0047 29.4 6.2 70 267-336 3-86 (452)
391 cd03191 GST_C_Zeta GST_C famil 22.1 8.5 0.00019 30.9 -3.2 37 268-304 65-107 (121)
392 cd03015 PRX_Typ2cys Peroxiredo 21.7 1.6E+02 0.0034 25.4 4.5 57 141-197 32-101 (173)
393 PF00043 GST_C: Glutathione S- 21.1 23 0.00049 26.8 -0.9 41 264-304 43-91 (95)
394 cd03021 DsbA_GSTK DsbA family, 21.0 1.2E+02 0.0027 27.0 3.8 32 140-171 2-37 (209)
395 PF13905 Thioredoxin_8: Thiore 20.8 2.9E+02 0.0062 20.6 5.4 31 142-172 6-42 (95)
396 cd03194 GST_C_3 GST_C family, 20.3 10 0.00022 30.7 -3.1 38 266-304 61-102 (114)
397 TIGR03140 AhpF alkyl hydropero 20.2 53 0.0012 33.9 1.4 57 259-315 120-177 (515)
398 COG3118 Thioredoxin domain-con 20.2 2.7E+02 0.0059 27.1 6.0 78 139-219 45-132 (304)
No 1
>PRK11752 putative S-transferase; Provisional
Probab=99.83 E-value=1.1e-20 Score=178.00 Aligned_cols=170 Identities=16% Similarity=0.213 Sum_probs=125.6
Q ss_pred CCCCCCcccccccCcccccccCCCCCCCCceEEeecCCCcCHHHHHHHHHHc------CCCeeEEEcC-CCCCCChhHHH
Q 019711 111 DEIPPDQYTLEIAGFKVKETSKLGPRPEKPIEIYEYESCPFCRKVREIVAVL------DLDVLYYPCP-RNGPNFRPKVL 183 (337)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~LY~~~~cP~c~kVr~~L~el------gl~ye~~~v~-~~~~~~~~e~~ 183 (337)
|..|||.|+++++|.+.++++++.+...++|+||+. .||+|+||+++|+|+ |++|+.+.|+ .++++..++|+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ly~~-~s~~~~rV~i~L~e~~~~~~~gl~ye~~~v~~~~~~~~~~e~~ 93 (264)
T PRK11752 15 DKSNGGAFANINRPVAGATHEKTLPVGKHPLQLYSL-GTPNGQKVTIMLEELLALGVKGAEYDAWLIRIGEGDQFSSGFV 93 (264)
T ss_pred ccCCCCcccccCCCCCCcchhcccCCCCCCeEEecC-CCCchHHHHHHHHHHHhccCCCCceEEEEecCccccccCHHHH
Confidence 456899999999999999999998888889999997 599999999999997 8999999986 55677789999
Q ss_pred hhCCCCCcCeEEcCCC--CeeEecchhHHHHHhhccCCCCcchhhhhhhh-hhhhhhhhh----h---ccccCCccCCCC
Q 019711 184 QMGGKKQFPYMVDPNT--GVSMYESDNIIKYLVGKYGDGSVPFMLSLGLL-TTLTEGFAM----I---GRLGKGQSYTPA 253 (337)
Q Consensus 184 ~~np~~kVP~Lvd~~~--g~~l~ES~aIi~YL~~~y~~~~~P~~~~~~al-~~l~~~l~~----~---~~~~~g~~~~~~ 253 (337)
++||.+|||+|++.++ |..|+||.||++||+++|+. ++|.+..+++. ..++.+... . .....+ ..++
T Consensus 94 ~iNP~GkVP~Lv~~dg~~~~~L~ES~AIl~YL~~~~~~-L~P~~~~era~v~~wl~~~~~~~~~~~~~~~~~~~--~~~~ 170 (264)
T PRK11752 94 EINPNSKIPALLDRSGNPPIRVFESGAILLYLAEKFGA-FLPKDLAARTETLNWLFWQQGSAPFLGGGFGHFYA--YAPE 170 (264)
T ss_pred hhCCCCCCCEEEeCCCCCCeEEEcHHHHHHHHHHhcCC-cCCCCHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH--hCCc
Confidence 9999999999997432 47899999999999999984 77866655542 111111100 0 000000 0111
Q ss_pred CCC----------CCchhhh--hhcCCCcchhhHhHHhhccCc
Q 019711 254 KLP----------PKPLEVW--AYEGSPFCKVVREVLVELELP 284 (337)
Q Consensus 254 ~~~----------~k~L~l~--~l~~sPf~~gvr~tLADl~L~ 284 (337)
... .+.+..+ .+..++|++|+++|+||+.+.
T Consensus 171 ~~~~~~~~~~~~~~~~L~~le~~L~~~~fl~Gd~~TlADi~l~ 213 (264)
T PRK11752 171 KIEYAINRFTMEAKRQLDVLDKQLAEHEYIAGDEYTIADIAIW 213 (264)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHhccCCCCCCCccCHHHHHHH
Confidence 100 1233334 456789999999999999974
No 2
>KOG0868 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=6.5e-21 Score=166.37 Aligned_cols=153 Identities=20% Similarity=0.207 Sum_probs=113.5
Q ss_pred CceEEeecCCCcCHHHHHHHHHHcCCCeeEEEcC--CCCCCChhHHHhhCCCCCcCeEEcCCCCeeEecchhHHHHHhhc
Q 019711 139 KPIEIYEYESCPFCRKVREIVAVLDLDVLYYPCP--RNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLVGK 216 (337)
Q Consensus 139 ~~l~LY~~~~cP~c~kVr~~L~elgl~ye~~~v~--~~~~~~~~e~~~~np~~kVP~Lvd~~~g~~l~ES~aIi~YL~~~ 216 (337)
...+||.|+.|..++|||++|..+|||||+++|+ +++++...||.++||++|||.|++ ||.+|.||.|||+||+++
T Consensus 4 ~KpiLYSYWrSSCswRVRiALaLK~iDYey~PvnLlk~~~q~~~ef~~iNPm~kVP~L~i--~g~tl~eS~AII~YLeEt 81 (217)
T KOG0868|consen 4 AKPILYSYWRSSCSWRVRIALALKGIDYEYKPVNLLKEEDQSDSEFKEINPMEKVPTLVI--DGLTLTESLAIIEYLEET 81 (217)
T ss_pred ccchhhhhhcccchHHHHHHHHHcCCCcceeehhhhcchhhhhhHHhhcCchhhCCeEEE--CCEEeehHHHHHHHHHhc
Confidence 3567999999988999999999999999999996 555778889999999999999999 999999999999999999
Q ss_pred cCCC-Ccchhhhhhhhhh-hhhhhhhhccccCCcc---CCCCCCC--------------CCchh-hhhhcCCCcchhhHh
Q 019711 217 YGDG-SVPFMLSLGLLTT-LTEGFAMIGRLGKGQS---YTPAKLP--------------PKPLE-VWAYEGSPFCKVVRE 276 (337)
Q Consensus 217 y~~~-~~P~~~~~~al~~-l~~~l~~~~~~~~g~~---~~~~~~~--------------~k~L~-l~~l~~sPf~~gvr~ 276 (337)
|++. ++|+++..|+... +..-+.....-..+.. ...++.+ -..++ +.....+.||+|+.+
T Consensus 82 ~P~ppLLP~d~~KRA~~r~i~~~i~sgIQPlQNl~vl~~l~ek~~~~~~~W~q~~ItkGF~ALEklL~~~aGkycvGDev 161 (217)
T KOG0868|consen 82 YPDPPLLPKDPHKRAKARAISLLIASGIQPLQNLSVLKMLNEKEPGYGDQWAQHFITKGFTALEKLLKSHAGKYCVGDEV 161 (217)
T ss_pred CCCCCCCCcCHHHHHHHHHHHHHHHhCCCcchhhHHHHHhcccccchhhHHHHHHHHHhHHHHHHHHHHccCCcccCcee
Confidence 9975 8999998887422 1111111000000000 0001100 12232 234557889999999
Q ss_pred HHhhccCceEEEEcCCC
Q 019711 277 VLVELELPHLQRSCARG 293 (337)
Q Consensus 277 tLADl~L~~~l~~v~~g 293 (337)
++||++++..++++++.
T Consensus 162 tiADl~L~pqv~nA~rf 178 (217)
T KOG0868|consen 162 TIADLCLPPQVYNANRF 178 (217)
T ss_pred ehhhhccchhhhhhhhc
Confidence 99999999998888654
No 3
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.81 E-value=8.8e-20 Score=140.33 Aligned_cols=77 Identities=58% Similarity=1.153 Sum_probs=69.3
Q ss_pred ceEEeecCCCcCHHHHHHHHHHcCCCeeEEEcCCCCCCChhHHHhhCCCCCcCeEEcCCCCeeEecchhHHHHHhhcc
Q 019711 140 PIEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLVGKY 217 (337)
Q Consensus 140 ~l~LY~~~~cP~c~kVr~~L~elgl~ye~~~v~~~~~~~~~e~~~~np~~kVP~Lvd~~~g~~l~ES~aIi~YL~~~y 217 (337)
+++||+++.||+|+||+++|+++||+|+.++++ .+++..++|+++||.++||+|++.++|.+|+||.+|++||+++|
T Consensus 1 ~~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~v~-~~~~~~~~~~~~~p~~~vP~l~~~~~~~~l~es~~I~~yL~~~~ 77 (77)
T cd03041 1 PLELYEFEGSPFCRLVREVLTELELDVILYPCP-KGSPKRDKFLEKGGKVQVPYLVDPNTGVQMFESADIVKYLFKTY 77 (77)
T ss_pred CceEecCCCCchHHHHHHHHHHcCCcEEEEECC-CChHHHHHHHHhCCCCcccEEEeCCCCeEEEcHHHHHHHHHHhC
Confidence 479999999999999999999999999999985 34456789999999999999997556789999999999999986
No 4
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=99.80 E-value=2.8e-20 Score=168.81 Aligned_cols=158 Identities=15% Similarity=0.222 Sum_probs=111.1
Q ss_pred ceEEeecCCCcCHHHHHHHHHHcCCCeeEEEcCCCCCCChhHHHhhCCCCCcCeEEcCCCCeeEecchhHHHHHhhccCC
Q 019711 140 PIEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLVGKYGD 219 (337)
Q Consensus 140 ~l~LY~~~~cP~c~kVr~~L~elgl~ye~~~v~~~~~~~~~e~~~~np~~kVP~Lvd~~~g~~l~ES~aIi~YL~~~y~~ 219 (337)
+|+||++..||+|++|+++|+++|++||.+.|+. +++.++|+++||.|+||+|+| +|..|+||.||++||+++|+.
T Consensus 10 ~~~Ly~~~~s~~~~rv~~~L~e~gl~~e~~~v~~--~~~~~~~~~~nP~g~VPvL~~--~g~~l~ES~AIl~YL~~~~~~ 85 (211)
T PRK09481 10 VMTLFSGPTDIYSHQVRIVLAEKGVSVEIEQVEK--DNLPQDLIDLNPYQSVPTLVD--RELTLYESRIIMEYLDERFPH 85 (211)
T ss_pred eeEEeCCCCChhHHHHHHHHHHCCCCCEEEeCCc--ccCCHHHHHhCCCCCCCEEEE--CCEEeeCHHHHHHHHHHhCCC
Confidence 4899999999999999999999999999999864 346689999999999999998 899999999999999999985
Q ss_pred -CCcchhhhhhhhh-hhhhhh----hhhcc-ccCCccCCCCCCC------CCchhhh--hhcCCCcchhhHhHHhhccCc
Q 019711 220 -GSVPFMLSLGLLT-TLTEGF----AMIGR-LGKGQSYTPAKLP------PKPLEVW--AYEGSPFCKVVREVLVELELP 284 (337)
Q Consensus 220 -~~~P~~~~~~al~-~l~~~l----~~~~~-~~~g~~~~~~~~~------~k~L~l~--~l~~sPf~~gvr~tLADl~L~ 284 (337)
.++|.+...++.. .+..++ ..... ...+ .+.... .+.+..+ .+..++|+.|+++|++|+.+.
T Consensus 86 ~~l~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~l~~le~~L~~~~~l~G~~~t~AD~~l~ 162 (211)
T PRK09481 86 PPLMPVYPVARGESRLMMHRIEKDWYSLMNKIVNG---SASEADAARKQLREELLAIAPVFGEKPYFMSEEFSLVDCYLA 162 (211)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHHHhccCCcccCCCccHHHHHHH
Confidence 4778776555421 111111 11111 1111 011000 1122223 456789999999999999875
Q ss_pred eEEEEc-----CC---CCCChHHHHHHc
Q 019711 285 HLQRSC-----AR---GSPKRQILIEKA 304 (337)
Q Consensus 285 ~~l~~v-----~~---g~pk~~e~~~~~ 304 (337)
..+.+. +. .-|+..+|+++.
T Consensus 163 ~~~~~~~~~~~~~~~~~~p~l~~w~~~~ 190 (211)
T PRK09481 163 PLLWRLPVLGIELSGPGAKELKGYMTRV 190 (211)
T ss_pred HHHHHHHhcCCCCCCCCChhHHHHHHHH
Confidence 443221 11 227888888877
No 5
>PLN02473 glutathione S-transferase
Probab=99.79 E-value=5.9e-20 Score=166.22 Aligned_cols=165 Identities=15% Similarity=0.098 Sum_probs=113.4
Q ss_pred CceEEeecCCCcCHHHHHHHHHHcCCCeeEEEcC-CCCCCChhHHHhhCCCCCcCeEEcCCCCeeEecchhHHHHHhhcc
Q 019711 139 KPIEIYEYESCPFCRKVREIVAVLDLDVLYYPCP-RNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLVGKY 217 (337)
Q Consensus 139 ~~l~LY~~~~cP~c~kVr~~L~elgl~ye~~~v~-~~~~~~~~e~~~~np~~kVP~Lvd~~~g~~l~ES~aIi~YL~~~y 217 (337)
|.|+||++..||+|+||+++|+++|++|+.+.++ .++++.+++|+++||.|+||+|+| +|.+|+||.||++||+++|
T Consensus 1 ~~~kLy~~~~s~~~~rv~~~L~e~gi~ye~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~--~g~~l~ES~aI~~YL~~~~ 78 (214)
T PLN02473 1 MVVKVYGQIKAANPQRVLLCFLEKGIEFEVIHVDLDKLEQKKPEHLLRQPFGQVPAIED--GDLKLFESRAIARYYATKY 78 (214)
T ss_pred CceEEecCCCCCchHHHHHHHHHcCCCceEEEecCcccccCCHHHHhhCCCCCCCeEEE--CCEEEEehHHHHHHHHHHc
Confidence 3689999999999999999999999999999986 556788899999999999999998 8899999999999999999
Q ss_pred CC---CCcchhhhhhhh-hhhhhhhhh--------hc--cccC---CccCCCCCCC---C---Cchhhh--hhcCCCcch
Q 019711 218 GD---GSVPFMLSLGLL-TTLTEGFAM--------IG--RLGK---GQSYTPAKLP---P---KPLEVW--AYEGSPFCK 272 (337)
Q Consensus 218 ~~---~~~P~~~~~~al-~~l~~~l~~--------~~--~~~~---g~~~~~~~~~---~---k~L~l~--~l~~sPf~~ 272 (337)
++ .++|.+...++. ..+..+... .. .... +......... . +.+..+ .+..++|+.
T Consensus 79 ~~~~~~l~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~ 158 (214)
T PLN02473 79 ADQGTDLLGKTLEHRAIVDQWVEVENNYFYAVALPLVINLVFKPRLGEPCDVALVEELKVKFDKVLDVYENRLATNRYLG 158 (214)
T ss_pred CCcCCCCCCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhcccccCCCChHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence 74 367776655542 111111111 00 0000 1111000000 0 122223 455679999
Q ss_pred hhHhHHhhccCceEEEEc---------CCCCCChHHHHHHcC
Q 019711 273 VVREVLVELELPHLQRSC---------ARGSPKRQILIEKAK 305 (337)
Q Consensus 273 gvr~tLADl~L~~~l~~v---------~~g~pk~~e~~~~~p 305 (337)
|+++|+||+.+...+.++ -..-|+..+|+++..
T Consensus 159 Gd~~t~ADi~~~~~~~~~~~~~~~~~~~~~~P~l~~w~~~~~ 200 (214)
T PLN02473 159 GDEFTLADLTHMPGMRYIMNETSLSGLVTSRENLNRWWNEIS 200 (214)
T ss_pred CCCCCHHHHHHHHHHHHHHhccccHHHHhcCHHHHHHHHHHh
Confidence 999999999764332211 123478888888773
No 6
>COG0625 Gst Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=2e-19 Score=162.69 Aligned_cols=164 Identities=20% Similarity=0.197 Sum_probs=115.2
Q ss_pred eEEeecCCCcCHHHHHHHHHHcCCCeeEEEcCCCCCCChhHHHhhCCCCCcCeEEcCCCCeeEecchhHHHHHhhccCCC
Q 019711 141 IEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLVGKYGDG 220 (337)
Q Consensus 141 l~LY~~~~cP~c~kVr~~L~elgl~ye~~~v~~~~~~~~~e~~~~np~~kVP~Lvd~~~g~~l~ES~aIi~YL~~~y~~~ 220 (337)
++||+...||+|+||+++|.++|++|+.+.|+...++..++|+++||.||||+|+++ ||.+|+||.||++||+++|+..
T Consensus 1 ~~L~~~~~sp~~~kv~l~l~e~g~~ye~~~v~~~~~~~~~~~~~~nP~gkVPvL~~~-~~~~l~ES~AI~~YL~~~~~~~ 79 (211)
T COG0625 1 MKLYGSPTSPYSRKVRLALEEKGLPYEIVLVDLDAEQKPPDFLALNPLGKVPALVDD-DGEVLTESGAILEYLAERYPGP 79 (211)
T ss_pred CeeecCCCCcchHHHHHHHHHcCCCceEEEeCcccccCCHHHHhcCCCCCCCEEeeC-CCCeeecHHHHHHHHHhhCCCC
Confidence 579999999999999999999999999999974336778999999999999999983 3348999999999999999987
Q ss_pred -Ccchhhh---hhhh-hhhhhhhh----h-hccccCCc---cCC-CCCC-------CCCchhhh--hhcCCCcchhhHhH
Q 019711 221 -SVPFMLS---LGLL-TTLTEGFA----M-IGRLGKGQ---SYT-PAKL-------PPKPLEVW--AYEGSPFCKVVREV 277 (337)
Q Consensus 221 -~~P~~~~---~~al-~~l~~~l~----~-~~~~~~g~---~~~-~~~~-------~~k~L~l~--~l~~sPf~~gvr~t 277 (337)
++|.+.. .++. ..+..+.. . ........ ... .... -.+.+..+ .+..++|+.|+++|
T Consensus 80 ~l~p~~~~~r~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t 159 (211)
T COG0625 80 PLLPADPLARRARALLLWWLFFAASDLHPVIGQRRRALLGSEPELLEAALEAARAEIRALLALLEALLADGPYLAGDRFT 159 (211)
T ss_pred CcCCCCchhHHHHHHHHHHHHHHHhcccHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHhccCCcccCCCCC
Confidence 8897764 3331 12222111 1 00000000 000 0000 01223333 55669999999999
Q ss_pred HhhccCceEEEEcCC------CCCChHHHHHHcC
Q 019711 278 LVELELPHLQRSCAR------GSPKRQILIEKAK 305 (337)
Q Consensus 278 LADl~L~~~l~~v~~------g~pk~~e~~~~~p 305 (337)
+||+.+...+.+... .-++...|+++..
T Consensus 160 iAD~~~~~~~~~~~~~~~~~~~~p~l~~w~~r~~ 193 (211)
T COG0625 160 IADIALAPLLWRLALLGEELADYPALKAWYERVL 193 (211)
T ss_pred HHHHHHHHHHHHhhhcCcccccChHHHHHHHHHH
Confidence 999999765554432 1478899998774
No 7
>PRK13972 GSH-dependent disulfide bond oxidoreductase; Provisional
Probab=99.77 E-value=7e-19 Score=159.79 Aligned_cols=163 Identities=20% Similarity=0.227 Sum_probs=107.9
Q ss_pred ceEEeecCCCcCHHHHHHHHHHcCCCeeEEEcC-CCCCCChhHHHhhCCCCCcCeEEcC---CCC--eeEecchhHHHHH
Q 019711 140 PIEIYEYESCPFCRKVREIVAVLDLDVLYYPCP-RNGPNFRPKVLQMGGKKQFPYMVDP---NTG--VSMYESDNIIKYL 213 (337)
Q Consensus 140 ~l~LY~~~~cP~c~kVr~~L~elgl~ye~~~v~-~~~~~~~~e~~~~np~~kVP~Lvd~---~~g--~~l~ES~aIi~YL 213 (337)
+++||+.+ +++|++|+++|+++||+|+.+.|+ .+++++.++|+++||.||||+|+|. +|| .+|+||.||++||
T Consensus 1 m~~Ly~~~-~~~~~~v~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~iNP~gkVP~L~~~~~~d~g~~~~L~ES~AI~~YL 79 (215)
T PRK13972 1 MIDLYFAP-TPNGHKITLFLEEAELDYRLIKVDLGKGGQFRPEFLRISPNNKIPAIVDHSPADGGEPLSLFESGAILLYL 79 (215)
T ss_pred CeEEEECC-CCChHHHHHHHHHcCCCcEEEEecCcccccCCHHHHhhCcCCCCCEEEeCCCCCCCCceeEEcHHHHHHHH
Confidence 37999876 799999999999999999999986 5567788999999999999999873 245 4799999999999
Q ss_pred hhccCCCCcchhhhhhhh-hhhhhhhhh-hcccc----CCccCCCCCCC-------C---Cchhhh--hhcCCCcchhhH
Q 019711 214 VGKYGDGSVPFMLSLGLL-TTLTEGFAM-IGRLG----KGQSYTPAKLP-------P---KPLEVW--AYEGSPFCKVVR 275 (337)
Q Consensus 214 ~~~y~~~~~P~~~~~~al-~~l~~~l~~-~~~~~----~g~~~~~~~~~-------~---k~L~l~--~l~~sPf~~gvr 275 (337)
+++|+. +.|.+..+++. ..+..+... +.... ......+...+ . +.+..+ .+..++|+.|++
T Consensus 80 ~~~~~~-l~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~Gd~ 158 (215)
T PRK13972 80 AEKTGL-FLSHETRERAATLQWLFWQVGGLGPMLGQNHHFNHAAPQTIPYAIERYQVETQRLYHVLNKRLENSPWLGGEN 158 (215)
T ss_pred HHhcCC-CCCCCHHHHHHHHHHHHHHhhccCcceeeeeeeeccCCCCCchHHHHHHHHHHHHHHHHHHHhccCccccCCC
Confidence 999963 55655555542 222222111 10000 00000111000 0 122222 456689999999
Q ss_pred hHHhhccCceEE-EEc----C-CCCCChHHHHHHc
Q 019711 276 EVLVELELPHLQ-RSC----A-RGSPKRQILIEKA 304 (337)
Q Consensus 276 ~tLADl~L~~~l-~~v----~-~g~pk~~e~~~~~ 304 (337)
+|+||+.+...+ .+. . ..-|++.+|+++.
T Consensus 159 ~t~ADi~l~~~~~~~~~~~~~~~~~P~l~~w~~r~ 193 (215)
T PRK13972 159 YSIADIACWPWVNAWTRQRIDLAMYPAVKNWHERI 193 (215)
T ss_pred CCHHHHHHHHHHHHHhhcCCcchhCHHHHHHHHHH
Confidence 999999873322 111 1 1237788888876
No 8
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=99.75 E-value=4.3e-18 Score=129.96 Aligned_cols=72 Identities=18% Similarity=0.314 Sum_probs=66.5
Q ss_pred eEEeecCCCcCHHHHHHHHHHcCCCeeEEEcC-CCCCCChhHHHhhCCCCCcCeEEcCCCCeeEecchhHHHHHh
Q 019711 141 IEIYEYESCPFCRKVREIVAVLDLDVLYYPCP-RNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLV 214 (337)
Q Consensus 141 l~LY~~~~cP~c~kVr~~L~elgl~ye~~~v~-~~~~~~~~e~~~~np~~kVP~Lvd~~~g~~l~ES~aIi~YL~ 214 (337)
++||+++.||+|++||++|+++|++|+.+.++ ..+++..++|.++||.++||+|++ ||..|+||.||++||+
T Consensus 1 ~~ly~~~~s~~s~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~inP~g~vP~L~~--~g~~l~Es~aI~~yLe 73 (73)
T cd03052 1 LVLYHWTQSFSSQKVRLVIAEKGLRCEEYDVSLPLSEHNEPWFMRLNPTGEVPVLIH--GDNIICDPTQIIDYLE 73 (73)
T ss_pred CEEecCCCCccHHHHHHHHHHcCCCCEEEEecCCcCccCCHHHHHhCcCCCCCEEEE--CCEEEEcHHHHHHHhC
Confidence 47999999999999999999999999999986 556677889999999999999998 8999999999999995
No 9
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=99.75 E-value=5.1e-18 Score=128.44 Aligned_cols=73 Identities=29% Similarity=0.557 Sum_probs=67.5
Q ss_pred eEEeecCCCcCHHHHHHHHHHcCCCeeEEEcC-CCCCCChhHHHhhCCCCCcCeEEcCCCCeeEecchhHHHHHhh
Q 019711 141 IEIYEYESCPFCRKVREIVAVLDLDVLYYPCP-RNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLVG 215 (337)
Q Consensus 141 l~LY~~~~cP~c~kVr~~L~elgl~ye~~~v~-~~~~~~~~e~~~~np~~kVP~Lvd~~~g~~l~ES~aIi~YL~~ 215 (337)
++||+++.||+|++|+++|+++|++|+.+.++ .+++++.++|+++||.++||+|++ +|..|+||.||++||++
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~--~~~~l~es~aI~~yL~~ 74 (74)
T cd03045 1 IDLYYLPGSPPCRAVLLTAKALGLELNLKEVNLMKGEHLKPEFLKLNPQHTVPTLVD--NGFVLWESHAILIYLVE 74 (74)
T ss_pred CEEEeCCCCCcHHHHHHHHHHcCCCCEEEEecCccCCcCCHHHHhhCcCCCCCEEEE--CCEEEEcHHHHHHHHhC
Confidence 58999999999999999999999999999996 456677899999999999999998 78999999999999975
No 10
>KOG0867 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=3.8e-18 Score=157.36 Aligned_cols=171 Identities=22% Similarity=0.281 Sum_probs=122.8
Q ss_pred CceEEeecCCCcCHHHHHHHHHHcCCCeeEEEcC-CCCCCChhHHHhhCCCCCcCeEEcCCCCeeEecchhHHHHHhhcc
Q 019711 139 KPIEIYEYESCPFCRKVREIVAVLDLDVLYYPCP-RNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLVGKY 217 (337)
Q Consensus 139 ~~l~LY~~~~cP~c~kVr~~L~elgl~ye~~~v~-~~~~~~~~e~~~~np~~kVP~Lvd~~~g~~l~ES~aIi~YL~~~y 217 (337)
|.++||+...+|+|++|.++++++|++||.+.|+ .+++|..+||+++||.++||+|+| +|..++||.||+.||+++|
T Consensus 1 ~~~~ly~~~~s~~~r~vl~~~~~~~l~~e~~~v~~~~ge~~~pefl~~nP~~kVP~l~d--~~~~l~eS~AI~~Yl~~ky 78 (226)
T KOG0867|consen 1 MKLKLYGHLGSPPARAVLIAAKELGLEVELKPVDLVKGEQKSPEFLKLNPLGKVPALED--GGLTLWESHAILRYLAEKY 78 (226)
T ss_pred CCceEeecCCCcchHHHHHHHHHcCCceeEEEeeccccccCCHHHHhcCcCCCCCeEec--CCeEEeeHHHHHHHHHHHc
Confidence 4688999999999999999999999999999886 889999999999999999999999 7999999999999999999
Q ss_pred C--CC-Ccchhhhhhhh-hhhhhhhhhhccc-----------cCCccCCCCCCC------CCchhhh--hhcCCCcchhh
Q 019711 218 G--DG-SVPFMLSLGLL-TTLTEGFAMIGRL-----------GKGQSYTPAKLP------PKPLEVW--AYEGSPFCKVV 274 (337)
Q Consensus 218 ~--~~-~~P~~~~~~al-~~l~~~l~~~~~~-----------~~g~~~~~~~~~------~k~L~l~--~l~~sPf~~gv 274 (337)
+ .. ++|.+...++. ..+..+....... ..+......... .+.+..+ .+..+.|.+|+
T Consensus 79 ~~~~~~l~p~~~~~ra~v~~~l~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~~~yl~g~ 158 (226)
T KOG0867|consen 79 GPLGGILLPKDLKERAIVDQWLEFENGVLDPVTFERPILAPLLVGLPLNPTAVKELEAKLRKALDNLERFLKTQVYLAGD 158 (226)
T ss_pred CCCCcccCCcCHHHHHHHHHHHHhhhcccccccccceeeecceecccCcchhhHHHHHHHHHHHHHHHHHHccCCcccCC
Confidence 7 23 67887766652 2222222111110 011111111111 1233333 56678999999
Q ss_pred HhHHhhccCceEEEEc------C---CCCCChHHHHHHcCCCCccEEE
Q 019711 275 REVLVELELPHLQRSC------A---RGSPKRQILIEKAKHFQVPYLE 313 (337)
Q Consensus 275 r~tLADl~L~~~l~~v------~---~g~pk~~e~~~~~p~~qVP~L~ 313 (337)
++|+||+.+...+..+ . ..-++...|+++.... |...
T Consensus 159 ~~tlADl~~~~~~~~~~~~~~~~~~~~~~p~v~~W~~~~~~~--P~~~ 204 (226)
T KOG0867|consen 159 QLTLADLSLASTLSQFQGKFATEKDFEKYPKVARWYERIQKR--PAYE 204 (226)
T ss_pred cccHHHHHHhhHHHHHhHhhhhhhhhhhChHHHHHHHHHHhC--ccHH
Confidence 9999999876554333 1 1237888999888543 6643
No 11
>PLN02395 glutathione S-transferase
Probab=99.73 E-value=4e-18 Score=154.22 Aligned_cols=163 Identities=13% Similarity=0.113 Sum_probs=109.6
Q ss_pred CceEEeecCCCcCHHHHHHHHHHcCCCeeEEEcC-CCCCCChhHHHhhCCCCCcCeEEcCCCCeeEecchhHHHHHhhcc
Q 019711 139 KPIEIYEYESCPFCRKVREIVAVLDLDVLYYPCP-RNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLVGKY 217 (337)
Q Consensus 139 ~~l~LY~~~~cP~c~kVr~~L~elgl~ye~~~v~-~~~~~~~~e~~~~np~~kVP~Lvd~~~g~~l~ES~aIi~YL~~~y 217 (337)
|+++||+...| +++||+++|+++|++|+.+.++ .++++..++|+++||.|+||+|+| +|..|+||.+|++||+++|
T Consensus 1 ~~~~ly~~~~~-~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~--~~~~l~ES~aI~~YL~~~~ 77 (215)
T PLN02395 1 MVLKVYGPAFA-SPKRALVTLIEKGVEFETVPVDLMKGEHKQPEYLALQPFGVVPVIVD--GDYKIFESRAIMRYYAEKY 77 (215)
T ss_pred CeEEEEcCCcC-cHHHHHHHHHHcCCCceEEEeccccCCcCCHHHHhhCCCCCCCEEEE--CCEEEEcHHHHHHHHHHHc
Confidence 46899997665 5899999999999999999986 556677889999999999999998 7889999999999999999
Q ss_pred CC---CCcchhhhhhhh-hhhhhhhh--------h-hccc-c---CCccCCCCCC---CC---Cchhhh--hhcCCCcch
Q 019711 218 GD---GSVPFMLSLGLL-TTLTEGFA--------M-IGRL-G---KGQSYTPAKL---PP---KPLEVW--AYEGSPFCK 272 (337)
Q Consensus 218 ~~---~~~P~~~~~~al-~~l~~~l~--------~-~~~~-~---~g~~~~~~~~---~~---k~L~l~--~l~~sPf~~ 272 (337)
+. .++|.+..+++. ..+..+.. . .... . .+....++.. .. +.+..+ .+..++|+.
T Consensus 78 ~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~ 157 (215)
T PLN02395 78 RSQGPDLLGKTIEERGQVEQWLDVEATSYHPPLLNLTLHILFASKMGFPADEKVIKESEEKLAKVLDVYEARLSKSKYLA 157 (215)
T ss_pred CCCCcCcCCCChhHHHHHHHHHHHHHHhcCchHHHHHHHHHhhhhccCCCcHHHHHHHHHHHHHHHHHHHHHhcCCcccc
Confidence 74 477876655542 11211111 0 0000 0 0111111100 00 122223 456679999
Q ss_pred hhHhHHhhccCceEEEEc----C-----CCCCChHHHHHHc
Q 019711 273 VVREVLVELELPHLQRSC----A-----RGSPKRQILIEKA 304 (337)
Q Consensus 273 gvr~tLADl~L~~~l~~v----~-----~g~pk~~e~~~~~ 304 (337)
|+++|+||+.+...+.++ . ...++..+|+++.
T Consensus 158 G~~~s~ADi~l~~~~~~~~~~~~~~~~~~~~p~L~~w~~~~ 198 (215)
T PLN02395 158 GDFVSLADLAHLPFTEYLVGPIGKAYLIKDRKHVSAWWDDI 198 (215)
T ss_pred CCCcCHHHHHHHHHHHHHhcccchhhhhccCchHHHHHHHH
Confidence 999999999874322111 0 1237788888776
No 12
>cd03048 GST_N_Ure2p_like GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and
Probab=99.72 E-value=2.9e-17 Score=126.91 Aligned_cols=79 Identities=29% Similarity=0.468 Sum_probs=69.7
Q ss_pred ceEEeecCCCcCHHHHHHHHHHcCCCeeEEEcC-CCCCCChhHHHhhCCCCCcCeEEcCC-CCeeEecchhHHHHHhhcc
Q 019711 140 PIEIYEYESCPFCRKVREIVAVLDLDVLYYPCP-RNGPNFRPKVLQMGGKKQFPYMVDPN-TGVSMYESDNIIKYLVGKY 217 (337)
Q Consensus 140 ~l~LY~~~~cP~c~kVr~~L~elgl~ye~~~v~-~~~~~~~~e~~~~np~~kVP~Lvd~~-~g~~l~ES~aIi~YL~~~y 217 (337)
+++||+++. |+|++|+++|+++|++|+.+.++ ..+++.+++|+++||.++||+|++.+ +|..|+||.+|++||+++|
T Consensus 1 ~~~Ly~~~~-~~~~~v~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~g~~l~eS~aI~~yL~~~~ 79 (81)
T cd03048 1 MITLYTHGT-PNGFKVSIMLEELGLPYEIHPVDISKGEQKKPEFLKINPNGRIPAIVDHNGTPLTVFESGAILLYLAEKY 79 (81)
T ss_pred CeEEEeCCC-CChHHHHHHHHHcCCCcEEEEecCcCCcccCHHHHHhCcCCCCCEEEeCCCCceEEEcHHHHHHHHHHHh
Confidence 489999985 99999999999999999999986 34566788999999999999999732 1889999999999999999
Q ss_pred CC
Q 019711 218 GD 219 (337)
Q Consensus 218 ~~ 219 (337)
++
T Consensus 80 ~~ 81 (81)
T cd03048 80 DK 81 (81)
T ss_pred CC
Confidence 74
No 13
>PRK15113 glutathione S-transferase; Provisional
Probab=99.72 E-value=3e-17 Score=149.23 Aligned_cols=163 Identities=12% Similarity=0.103 Sum_probs=110.8
Q ss_pred CCceEEeecC--CCcCHHHHHHHHHHcCCCeeEEEcC-CCCCCChhHHHhhCCCCCcCeEEcCCCCeeEecchhHHHHHh
Q 019711 138 EKPIEIYEYE--SCPFCRKVREIVAVLDLDVLYYPCP-RNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLV 214 (337)
Q Consensus 138 ~~~l~LY~~~--~cP~c~kVr~~L~elgl~ye~~~v~-~~~~~~~~e~~~~np~~kVP~Lvd~~~g~~l~ES~aIi~YL~ 214 (337)
.++++||+.. .||+|++|+++|+++||+|+.+.++ .++++..++|+++||.|+||+|+| ||..|+||.||++||+
T Consensus 3 ~~~~~Ly~~~~~~s~~~~rv~~~l~e~gi~~e~~~v~~~~~~~~~~~~~~~nP~g~VP~L~~--~~~~l~ES~aI~~YL~ 80 (214)
T PRK15113 3 KPAITLYSDAHFFSPYVMSAFVALQEKGLPFELKTVDLDAGEHLQPTYQGYSLTRRVPTLQH--DDFELSESSAIAEYLE 80 (214)
T ss_pred CCeEEEEeCCCCCCchHHHHHHHHHHcCCCCeEEEeCCCCccccCHHHHhcCCCCCCCEEEE--CCEEEecHHHHHHHHH
Confidence 4568999975 6999999999999999999999996 556778899999999999999998 8899999999999999
Q ss_pred hccCC-C---Ccchhhhhhhh-hhhhhhhhh-hcc---------ccCCccCCCCCCC------CCchhhh--hhc-CCCc
Q 019711 215 GKYGD-G---SVPFMLSLGLL-TTLTEGFAM-IGR---------LGKGQSYTPAKLP------PKPLEVW--AYE-GSPF 270 (337)
Q Consensus 215 ~~y~~-~---~~P~~~~~~al-~~l~~~l~~-~~~---------~~~g~~~~~~~~~------~k~L~l~--~l~-~sPf 270 (337)
++|++ . ++|.+..+++. ..+..++.. +.. ...+. ..+.... .+.+..+ .+. ..+|
T Consensus 81 ~~~~~~~~~~l~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~le~~L~~~~~~ 159 (214)
T PRK15113 81 ERFAPPAWERIYPADLQARARARQIQAWLRSDLMPLREERPTDVVFAGA-KKAPLSEAGKAAAEKLFAVAERLLAPGQPN 159 (214)
T ss_pred HHcCCCCccccCCCCHHHHHHHHHHHHHHHhhhHHHhccCccchhccCC-CCCcccHHHHHHHHHHHHHHHHHHhcCCCE
Confidence 99974 3 77877666552 222222211 100 00000 0011000 1223333 443 3479
Q ss_pred chhhHhHHhhccCceEEEEcCC---C-CCChHHHHHHc
Q 019711 271 CKVVREVLVELELPHLQRSCAR---G-SPKRQILIEKA 304 (337)
Q Consensus 271 ~~gvr~tLADl~L~~~l~~v~~---g-~pk~~e~~~~~ 304 (337)
+.|. +|+||+.+...+.+... . .++..+|.++.
T Consensus 160 l~G~-~TlADi~l~~~l~~~~~~~~~~~p~l~~~~~r~ 196 (214)
T PRK15113 160 LFGE-WCIADTDLALMLNRLVLHGDEVPERLADYATFQ 196 (214)
T ss_pred eeCC-ccHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 9995 99999987654322211 1 15677777765
No 14
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=99.72 E-value=2.6e-17 Score=124.05 Aligned_cols=73 Identities=21% Similarity=0.340 Sum_probs=66.7
Q ss_pred eEEeecCCCcCHHHHHHHHHHcCCCeeEEEcCCCCCCChhHHHhhCCCCCcCeEEcCCCCeeEecchhHHHHHhhcc
Q 019711 141 IEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLVGKY 217 (337)
Q Consensus 141 l~LY~~~~cP~c~kVr~~L~elgl~ye~~~v~~~~~~~~~e~~~~np~~kVP~Lvd~~~g~~l~ES~aIi~YL~~~y 217 (337)
|+||+.+.||+|++|+++|+++|++|+.+.++. .++.++|+++||.++||+|++ +|..|+||.+|++||+++|
T Consensus 1 ~~ly~~~~~~~~~~v~~~l~~~gi~~~~~~v~~--~~~~~~~~~~~p~~~vP~l~~--~~~~l~es~aI~~yL~~~~ 73 (73)
T cd03059 1 MTLYSGPDDVYSHRVRIVLAEKGVSVEIIDVDP--DNPPEDLAELNPYGTVPTLVD--RDLVLYESRIIMEYLDERF 73 (73)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCccEEEEcCC--CCCCHHHHhhCCCCCCCEEEE--CCEEEEcHHHHHHHHHhhC
Confidence 589999999999999999999999999998853 245689999999999999998 7789999999999999876
No 15
>PRK10387 glutaredoxin 2; Provisional
Probab=99.72 E-value=1.3e-17 Score=150.20 Aligned_cols=78 Identities=29% Similarity=0.524 Sum_probs=66.4
Q ss_pred eEEeecCCCcCHHHHHHHHHHcCCCeeEEEcCCCCCCChhHHHhhCCCCCcCeEE-cCCCCeeEecchhHHHHHhhccCC
Q 019711 141 IEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMV-DPNTGVSMYESDNIIKYLVGKYGD 219 (337)
Q Consensus 141 l~LY~~~~cP~c~kVr~~L~elgl~ye~~~v~~~~~~~~~e~~~~np~~kVP~Lv-d~~~g~~l~ES~aIi~YL~~~y~~ 219 (337)
|+||++..||+|+||+++|+++||+|+.+.++.. ++.. ..+.||.++||+|+ | +|..|+||.||++||+++|++
T Consensus 1 ~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~~~~~-~~~~--~~~~~p~~~VPvL~~~--~g~~l~eS~aI~~yL~~~~~~ 75 (210)
T PRK10387 1 MKLYIYDHCPFCVKARMIFGLKNIPVELIVLAND-DEAT--PIRMIGQKQVPILQKD--DGSYMPESLDIVHYIDELDGK 75 (210)
T ss_pred CEEEeCCCCchHHHHHHHHHHcCCCeEEEEcCCC-chhh--HHHhcCCcccceEEec--CCeEecCHHHHHHHHHHhCCC
Confidence 5899999999999999999999999999988532 2222 26799999999994 6 789999999999999999997
Q ss_pred CCcc
Q 019711 220 GSVP 223 (337)
Q Consensus 220 ~~~P 223 (337)
..++
T Consensus 76 ~~l~ 79 (210)
T PRK10387 76 PLLT 79 (210)
T ss_pred ccCC
Confidence 5443
No 16
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=99.71 E-value=2.1e-17 Score=126.33 Aligned_cols=73 Identities=27% Similarity=0.523 Sum_probs=67.3
Q ss_pred EeecCCCcCHHHHHHHHHHcCCCeeEEEcCCCCCCChhHHHhhCCCCCcCeEEcCCCCeeEecchhHHHHHhhccCC
Q 019711 143 IYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLVGKYGD 219 (337)
Q Consensus 143 LY~~~~cP~c~kVr~~L~elgl~ye~~~v~~~~~~~~~e~~~~np~~kVP~Lvd~~~g~~l~ES~aIi~YL~~~y~~ 219 (337)
||++..||||+|||++|+++||+|+.++++.. ..+++|.++||.++||+|++ ||.+|+||.+|++||+++|++
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~~~i~~~~~~v~~~--~~~~~~~~~~p~~~vPvL~~--~g~~l~dS~~I~~yL~~~~~~ 73 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEEKGIPYELVPVDPE--EKRPEFLKLNPKGKVPVLVD--DGEVLTDSAAIIEYLEERYPG 73 (75)
T ss_dssp EEEETTSHHHHHHHHHHHHHTEEEEEEEEBTT--STSHHHHHHSTTSBSSEEEE--TTEEEESHHHHHHHHHHHSTS
T ss_pred CCCcCCChHHHHHHHHHHHcCCeEEEeccCcc--cchhHHHhhcccccceEEEE--CCEEEeCHHHHHHHHHHHcCC
Confidence 89999999999999999999999999998632 23789999999999999997 799999999999999999986
No 17
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=99.70 E-value=5.6e-17 Score=123.83 Aligned_cols=75 Identities=21% Similarity=0.345 Sum_probs=68.6
Q ss_pred eEEeecCCCcCHHHHHHHHHHcCCCeeEEEcC-CCCCCChhHHHhhCCCCCcCeEEcCCCCeeEecchhHHHHHhhcc
Q 019711 141 IEIYEYESCPFCRKVREIVAVLDLDVLYYPCP-RNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLVGKY 217 (337)
Q Consensus 141 l~LY~~~~cP~c~kVr~~L~elgl~ye~~~v~-~~~~~~~~e~~~~np~~kVP~Lvd~~~g~~l~ES~aIi~YL~~~y 217 (337)
++||+++.|++|++|+++|+++|++|+.+.++ .++++..++|.++||.++||+|++ +|..|+||.||++||+++|
T Consensus 1 ~~ly~~~~s~~~~~v~~~l~~~g~~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~--~~~~l~eS~aI~~Yl~~~~ 76 (76)
T cd03050 1 LKLYYDLMSQPSRAVYIFLKLNKIPFEECPIDLRKGEQLTPEFKKINPFGKVPAIVD--GDFTLAESVAILRYLARKF 76 (76)
T ss_pred CEEeeCCCChhHHHHHHHHHHcCCCcEEEEecCCCCCcCCHHHHHhCcCCCCCEEEE--CCEEEEcHHHHHHHHHhhC
Confidence 57999999999999999999999999999986 445666789999999999999998 7889999999999999876
No 18
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=99.70 E-value=8.3e-17 Score=122.51 Aligned_cols=74 Identities=23% Similarity=0.350 Sum_probs=67.6
Q ss_pred eEEeecCCCcCHHHHHHHHHHcCCCeeEEEcC-CCCCCChhHHHhhCCCCCcCeEEcCCCCeeEecchhHHHHHhhc
Q 019711 141 IEIYEYESCPFCRKVREIVAVLDLDVLYYPCP-RNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLVGK 216 (337)
Q Consensus 141 l~LY~~~~cP~c~kVr~~L~elgl~ye~~~v~-~~~~~~~~e~~~~np~~kVP~Lvd~~~g~~l~ES~aIi~YL~~~ 216 (337)
++||+++.||+|++||++|+++|++|+.+.++ ..+++..++|.++||.++||+|++ +|..|+||.||++||+++
T Consensus 2 ~~Ly~~~~s~~s~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~P~~~vP~l~~--~g~~l~es~aI~~yL~~~ 76 (76)
T cd03053 2 LKLYGAAMSTCVRRVLLCLEEKGVDYELVPVDLTKGEHKSPEHLARNPFGQIPALED--GDLKLFESRAITRYLAEK 76 (76)
T ss_pred eEEEeCCCChhHHHHHHHHHHcCCCcEEEEeCccccccCCHHHHhhCCCCCCCEEEE--CCEEEEcHHHHHHHHhhC
Confidence 78999999999999999999999999999886 345566789999999999999998 789999999999999874
No 19
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.69 E-value=9.3e-17 Score=120.72 Aligned_cols=72 Identities=24% Similarity=0.429 Sum_probs=66.5
Q ss_pred eEEeecCCCcCHHHHHHHHHHcCCCeeEEEcC-CCCCCChhHHHhhCCCCCcCeEEcCCCCeeEecchhHHHHHh
Q 019711 141 IEIYEYESCPFCRKVREIVAVLDLDVLYYPCP-RNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLV 214 (337)
Q Consensus 141 l~LY~~~~cP~c~kVr~~L~elgl~ye~~~v~-~~~~~~~~e~~~~np~~kVP~Lvd~~~g~~l~ES~aIi~YL~ 214 (337)
++||+++.||+|++|+++|+++|++|+.+.++ ..+++..++|.++||.++||+|++ +|..|+||.+|++||+
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~--~~~~i~es~aI~~yl~ 73 (73)
T cd03056 1 MKLYGFPLSGNCYKVRLLLALLGIPYEWVEVDILKGETRTPEFLALNPNGEVPVLEL--DGRVLAESNAILVYLA 73 (73)
T ss_pred CEEEeCCCCccHHHHHHHHHHcCCCcEEEEecCCCcccCCHHHHHhCCCCCCCEEEE--CCEEEEcHHHHHHHhC
Confidence 58999999999999999999999999999986 456677889999999999999998 7899999999999985
No 20
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=99.69 E-value=8.4e-17 Score=120.97 Aligned_cols=73 Identities=25% Similarity=0.354 Sum_probs=65.4
Q ss_pred eEEeecCCCcCHHHHHHHHHHcCCCeeEEEcC-CCCCCChhHHHhhCCCCCcCeEEcCCCCeeEecchhHHHHHh
Q 019711 141 IEIYEYESCPFCRKVREIVAVLDLDVLYYPCP-RNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLV 214 (337)
Q Consensus 141 l~LY~~~~cP~c~kVr~~L~elgl~ye~~~v~-~~~~~~~~e~~~~np~~kVP~Lvd~~~g~~l~ES~aIi~YL~ 214 (337)
|+||+++.||+|+|+|++|+++|++|+.+.++ .++++..++|.++||.++||+|+++ +|..|+||.+|++||+
T Consensus 1 ~~Ly~~~~s~~~~~~~~~L~~~~l~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~-~~~~l~es~aI~~yLe 74 (74)
T cd03051 1 MKLYDSPTAPNPRRVRIFLAEKGIDVPLVTVDLAAGEQRSPEFLAKNPAGTVPVLELD-DGTVITESVAICRYLE 74 (74)
T ss_pred CEEEeCCCCcchHHHHHHHHHcCCCceEEEeecccCccCCHHHHhhCCCCCCCEEEeC-CCCEEecHHHHHHHhC
Confidence 58999999999999999999999999999986 4455677899999999999999742 6789999999999985
No 21
>PRK10542 glutathionine S-transferase; Provisional
Probab=99.68 E-value=3.1e-17 Score=146.68 Aligned_cols=160 Identities=14% Similarity=0.108 Sum_probs=104.0
Q ss_pred eEEeecCCCcCHHHHHHHHHHcCCCeeEEEcC-CCCC-CChhHHHhhCCCCCcCeEEcCCCCeeEecchhHHHHHhhccC
Q 019711 141 IEIYEYESCPFCRKVREIVAVLDLDVLYYPCP-RNGP-NFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLVGKYG 218 (337)
Q Consensus 141 l~LY~~~~cP~c~kVr~~L~elgl~ye~~~v~-~~~~-~~~~e~~~~np~~kVP~Lvd~~~g~~l~ES~aIi~YL~~~y~ 218 (337)
|+||+...+ ++++|+++|+++||+|+.+.|+ .+++ +..++|+++||.|+||+|++ +||..|+||.+|++||+++|+
T Consensus 1 m~l~~~~~s-~~~~~~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~nP~g~vPvL~~-~~g~~l~eS~aI~~YL~~~~~ 78 (201)
T PRK10542 1 MKLFYKPGA-CSLASHITLRESGLDFTLVSVDLAKKRLENGDDYLAINPKGQVPALLL-DDGTLLTEGVAIMQYLADSVP 78 (201)
T ss_pred CceeecccH-HHHHHHHHHHHcCCCceEEEeecccccccCChHHHHhCcCCCCCeEEe-CCCcEeecHHHHHHHHHHhCc
Confidence 579998755 6999999999999999999886 3333 45688999999999999974 278899999999999999998
Q ss_pred CC-Cc-chhhhhhhh-hhhhhhh----hh-hccccCCccCCCCCC----CC---Cchhhh--hhcCCCcchhhHhHHhhc
Q 019711 219 DG-SV-PFMLSLGLL-TTLTEGF----AM-IGRLGKGQSYTPAKL----PP---KPLEVW--AYEGSPFCKVVREVLVEL 281 (337)
Q Consensus 219 ~~-~~-P~~~~~~al-~~l~~~l----~~-~~~~~~g~~~~~~~~----~~---k~L~l~--~l~~sPf~~gvr~tLADl 281 (337)
+. ++ |.+...++. ..+..+. .. ......+. .++.. .. +.+..+ .+..++|+.|+++|+||+
T Consensus 79 ~~~l~~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~s~ADi 156 (201)
T PRK10542 79 DRQLLAPVGSLSRYHTIEWLNYIATELHKGFTPLFRPD--TPEEYKPTVRAQLEKKFQYVDEALADEQWICGQRFTIADA 156 (201)
T ss_pred ccccCCCCCcHHHHHHHHHHHHHHhhhhhhhhhccCCC--ChHHHHHHHHHHHHHHHHHHHHHhcCCCeeeCCCCcHHhH
Confidence 54 34 544444442 1111111 11 00111110 11110 00 122333 455689999999999999
Q ss_pred cCceEEEEcCC------CCCChHHHHHHc
Q 019711 282 ELPHLQRSCAR------GSPKRQILIEKA 304 (337)
Q Consensus 282 ~L~~~l~~v~~------g~pk~~e~~~~~ 304 (337)
.+...+.+... .-|+...|+++.
T Consensus 157 ~l~~~~~~~~~~~~~~~~~p~l~~w~~~~ 185 (201)
T PRK10542 157 YLFTVLRWAYAVKLNLEGLEHIAAYMQRV 185 (201)
T ss_pred HHHHHHHHhhccCCCcccchHHHHHHHHH
Confidence 87544333211 126677777765
No 22
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=99.68 E-value=1.4e-16 Score=120.98 Aligned_cols=73 Identities=21% Similarity=0.296 Sum_probs=65.7
Q ss_pred eEEeecCCCcCHHHHHHHHHHcCCCeeEEEcCCCCCCChhHHHhhCCC-CCcCeEEcCCCCeeEecchhHHHHHhhcc
Q 019711 141 IEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGK-KQFPYMVDPNTGVSMYESDNIIKYLVGKY 217 (337)
Q Consensus 141 l~LY~~~~cP~c~kVr~~L~elgl~ye~~~v~~~~~~~~~e~~~~np~-~kVP~Lvd~~~g~~l~ES~aIi~YL~~~y 217 (337)
|+||++..||+|+||+++|+++|++|+.+.++.. ++.++|+++||. ++||+|++ +|..++||.+|++||+++|
T Consensus 1 ~~Ly~~~~sp~~~~v~~~l~~~gl~~~~~~~~~~--~~~~~~~~~~p~~~~vP~l~~--~~~~l~eS~aI~~yL~~~~ 74 (74)
T cd03058 1 VKLLGAWASPFVLRVRIALALKGVPYEYVEEDLG--NKSELLLASNPVHKKIPVLLH--NGKPICESLIIVEYIDEAW 74 (74)
T ss_pred CEEEECCCCchHHHHHHHHHHcCCCCEEEEeCcc--cCCHHHHHhCCCCCCCCEEEE--CCEEeehHHHHHHHHHhhC
Confidence 5899999999999999999999999999987532 456789999995 99999998 7899999999999999875
No 23
>TIGR01262 maiA maleylacetoacetate isomerase. Maleylacetoacetate isomerase is an enzyme of tyrosine and phenylalanine catabolism. It requires glutathione and belongs by homology to the zeta family of glutathione S-transferases. The enzyme (EC 5.2.1.2) is described as active also on maleylpyruvate, and the example from a Ralstonia sp. catabolic plasmid is described as a maleylpyruvate isomerase involved in gentisate catabolism.
Probab=99.67 E-value=3.3e-17 Score=147.50 Aligned_cols=167 Identities=19% Similarity=0.205 Sum_probs=111.0
Q ss_pred EEeecCCCcCHHHHHHHHHHcCCCeeEEEcCC--CCCCChhHHHhhCCCCCcCeEEcCCCCeeEecchhHHHHHhhccCC
Q 019711 142 EIYEYESCPFCRKVREIVAVLDLDVLYYPCPR--NGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLVGKYGD 219 (337)
Q Consensus 142 ~LY~~~~cP~c~kVr~~L~elgl~ye~~~v~~--~~~~~~~e~~~~np~~kVP~Lvd~~~g~~l~ES~aIi~YL~~~y~~ 219 (337)
+||++..||+|++||++|+++||+|+.+.++. .+++..++|+++||.++||+|++ +|..|+||.+|++||+++|+.
T Consensus 1 ~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~nP~g~vP~L~~--~g~~l~ES~aI~~yl~~~~~~ 78 (210)
T TIGR01262 1 KLYSYWRSSCSYRVRIALALKGIDYEYVPVNLLRDGEQRSPEFLALNPQGLVPTLDI--DGEVLTQSLAIIEYLEETYPD 78 (210)
T ss_pred CcccCCCCCchHHHHHHHHHCCCCceEEecccccccccCChhhhhcCCCCcCCEEEE--CCEEeecHHHHHHHHHHhCCC
Confidence 48999999999999999999999999998863 24556788999999999999998 889999999999999999985
Q ss_pred -CCcchhhhhhhh-hhhhhhhhh---------hc-cccCCccCCCCCC---CC----Cchhhh--hhcC--CCcchhhHh
Q 019711 220 -GSVPFMLSLGLL-TTLTEGFAM---------IG-RLGKGQSYTPAKL---PP----KPLEVW--AYEG--SPFCKVVRE 276 (337)
Q Consensus 220 -~~~P~~~~~~al-~~l~~~l~~---------~~-~~~~g~~~~~~~~---~~----k~L~l~--~l~~--sPf~~gvr~ 276 (337)
.+.|.+..+++. ..+..++.. .. .........++.. .. +.+..+ .+.. ++|++|.++
T Consensus 79 ~~l~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~ 158 (210)
T TIGR01262 79 PPLLPADPIKRARVRALALLIACDIHPLNNLRVLQYLREKLGVEEEARNRWYQHWISKGFAALEALLQPHAGAFCVGDTP 158 (210)
T ss_pred CCCCCCCHHHHHHHHHHHHHHhcccChhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCEeeCCCC
Confidence 477866555441 111111110 00 0000000011110 01 223333 3433 579999999
Q ss_pred HHhhccCceEEEEcC------CCCCChHHHHHHcCCCCccEE
Q 019711 277 VLVELELPHLQRSCA------RGSPKRQILIEKAKHFQVPYL 312 (337)
Q Consensus 277 tLADl~L~~~l~~v~------~g~pk~~e~~~~~p~~qVP~L 312 (337)
|+||+.+...+.+.. ..-+++.+|++++-. .|.+
T Consensus 159 T~ADi~~~~~l~~~~~~~~~~~~~p~l~~~~~~~~~--rp~~ 198 (210)
T TIGR01262 159 TLADLCLVPQVYNAERFGVDLTPYPTLRRIAAALAA--LPAF 198 (210)
T ss_pred CHHHHHHHHHHHHHHHcCCCcccchHHHHHHHHHhc--CHHH
Confidence 999999754432221 122788889887733 3544
No 24
>PLN02378 glutathione S-transferase DHAR1
Probab=99.66 E-value=4.5e-17 Score=148.29 Aligned_cols=172 Identities=16% Similarity=0.123 Sum_probs=110.2
Q ss_pred cCCCcCHHHHHHHHHHcCCCeeEEEcCCCCCCChhHHHhhCCCCCcCeEEcCCCCeeEecchhHHHHHhhccCCCCcchh
Q 019711 146 YESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLVGKYGDGSVPFM 225 (337)
Q Consensus 146 ~~~cP~c~kVr~~L~elgl~ye~~~v~~~~~~~~~e~~~~np~~kVP~Lvd~~~g~~l~ES~aIi~YL~~~y~~~~~P~~ 225 (337)
+..||||+||+++|+++|++|+.+.|+.. +..++|+++||.|+||+|++ +|.+|+||.+|++||+++|+.... .+
T Consensus 17 ~~~~p~~~rv~~~L~e~gl~~e~~~v~~~--~~~~~~l~inP~G~VPvL~~--~~~~l~ES~aI~~YL~~~~~~~~l-~~ 91 (213)
T PLN02378 17 LGDCPFSQRALLTLEEKSLTYKIHLINLS--DKPQWFLDISPQGKVPVLKI--DDKWVTDSDVIVGILEEKYPDPPL-KT 91 (213)
T ss_pred CCCCcchHHHHHHHHHcCCCCeEEEeCcc--cCCHHHHHhCCCCCCCEEEE--CCEEecCHHHHHHHHHHhCCCCCC-CC
Confidence 44699999999999999999999999642 23468999999999999998 788999999999999999985321 22
Q ss_pred hhhhhh--hhhhhhhhhhccccCCccCCCCCCC---CCchhhh--hhc--CCCcchhhHhHHhhccCceEEEE-------
Q 019711 226 LSLGLL--TTLTEGFAMIGRLGKGQSYTPAKLP---PKPLEVW--AYE--GSPFCKVVREVLVELELPHLQRS------- 289 (337)
Q Consensus 226 ~~~~al--~~l~~~l~~~~~~~~g~~~~~~~~~---~k~L~l~--~l~--~sPf~~gvr~tLADl~L~~~l~~------- 289 (337)
...++. ..+...+.... .+.. ..+... .+.+..+ .+. +++|+.|+++|++|+.+...+.+
T Consensus 92 ~~~~a~i~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~l~~le~~L~~~~~~fl~Gd~~T~ADi~l~~~~~~l~~~~~~ 167 (213)
T PLN02378 92 PAEFASVGSNIFGTFGTFL---KSKD-SNDGSEHALLVELEALENHLKSHDGPFIAGERVSAVDLSLAPKLYHLQVALGH 167 (213)
T ss_pred HHHHHHHHHHHHHHHHHHH---hcCC-hhhHHHHHHHHHHHHHHHHHhcCCCCCcCCCCCchhhHHHHHHHHHHHHHHHH
Confidence 233331 22222111111 1100 001100 1223333 343 47999999999999986544221
Q ss_pred -----cCCCCCChHHHHHHcCCCCccEEEcCCCCeeeecHHHHHHHHH
Q 019711 290 -----CARGSPKRQILIEKAKHFQVPYLEDPNTGVQMFESADIVEYLR 332 (337)
Q Consensus 290 -----v~~g~pk~~e~~~~~p~~qVP~L~d~~~g~~l~ES~~I~~YL~ 332 (337)
...+.++..+|+++.- +.|.+.. ..--|+..|..||-
T Consensus 168 ~~~~~~~~~~p~l~~w~~~~~--~rpa~~~----~~~~~~~~~~~~~~ 209 (213)
T PLN02378 168 FKSWSVPESFPHVHNYMKTLF--SLDSFEK----TKTEEKYVISGWAP 209 (213)
T ss_pred hcCCCchhHhHHHHHHHHHHh--cCCCeec----ccCChHHHHHHHHh
Confidence 1123378899998873 4666654 12344556666653
No 25
>cd03047 GST_N_2 GST_N family, unknown subfamily 2; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The sequence from Burkholderia cepacia was identified as part of a gene cluster involved in the degradation of 2,4,5-trichlorophenoxyacetic acid. Some GSTs (e.g. Class Zeta and Delta) are known to catalyze dechlorination reactions.
Probab=99.66 E-value=3.4e-16 Score=118.69 Aligned_cols=72 Identities=24% Similarity=0.314 Sum_probs=65.7
Q ss_pred eEEeecCCCcCHHHHHHHHHHcCCCeeEEEcC-CCCCCChhHHHhhCCCCCcCeEEcCCCCeeEecchhHHHHHh
Q 019711 141 IEIYEYESCPFCRKVREIVAVLDLDVLYYPCP-RNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLV 214 (337)
Q Consensus 141 l~LY~~~~cP~c~kVr~~L~elgl~ye~~~v~-~~~~~~~~e~~~~np~~kVP~Lvd~~~g~~l~ES~aIi~YL~ 214 (337)
++||+++.||+|++|+++|+++|++|+.+.++ ..+++..++|+++||.++||+|+| +|..|+||.||++||+
T Consensus 1 ~~l~~~~~s~~~~~v~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~nP~~~vP~L~~--~~~~l~eS~aI~~YL~ 73 (73)
T cd03047 1 LTIWGRRSSINVQKVLWLLDELGLPYERIDAGGQFGGLDTPEFLAMNPNGRVPVLED--GDFVLWESNAILRYLA 73 (73)
T ss_pred CEEEecCCCcchHHHHHHHHHcCCCCEEEEeccccccccCHHHHhhCCCCCCCEEEE--CCEEEECHHHHHHHhC
Confidence 47999999999999999999999999999885 345667889999999999999998 7889999999999985
No 26
>cd03057 GST_N_Beta GST_N family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site forms a covalent bond with GSH.
Probab=99.65 E-value=4.1e-16 Score=119.20 Aligned_cols=76 Identities=20% Similarity=0.201 Sum_probs=67.3
Q ss_pred eEEeecCCCcCHHHHHHHHHHcCCCeeEEEcC-CCCCCChhHHHhhCCCCCcCeEEcCCCCeeEecchhHHHHHhhccC
Q 019711 141 IEIYEYESCPFCRKVREIVAVLDLDVLYYPCP-RNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLVGKYG 218 (337)
Q Consensus 141 l~LY~~~~cP~c~kVr~~L~elgl~ye~~~v~-~~~~~~~~e~~~~np~~kVP~Lvd~~~g~~l~ES~aIi~YL~~~y~ 218 (337)
++||+++.| +|++|+++|+++|++|+.+.++ .++++..++|+++||.++||+|++. +|..|+||.+|++||+++|+
T Consensus 1 ~~Ly~~~~~-~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~np~~~vP~l~~~-~g~~l~eS~aI~~yL~~~~p 77 (77)
T cd03057 1 MKLYYSPGA-CSLAPHIALEELGLPFELVRVDLRTKTQKGADYLAINPKGQVPALVLD-DGEVLTESAAILQYLADLHP 77 (77)
T ss_pred CEEEeCCCC-chHHHHHHHHHcCCCceEEEEecccCccCCHhHHHhCCCCCCCEEEEC-CCcEEEcHHHHHHHHHHhCc
Confidence 579999876 5999999999999999999886 4556778899999999999999872 48899999999999999885
No 27
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=99.64 E-value=6.3e-16 Score=116.68 Aligned_cols=69 Identities=20% Similarity=0.376 Sum_probs=61.9
Q ss_pred EEeecCCCcCHHHHHHHHHHcCCCeeEEEcCCCCCCChhHHHhhCCCCCcCeEEcCCCCeeEecchhHHHHH
Q 019711 142 EIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYL 213 (337)
Q Consensus 142 ~LY~~~~cP~c~kVr~~L~elgl~ye~~~v~~~~~~~~~e~~~~np~~kVP~Lvd~~~g~~l~ES~aIi~YL 213 (337)
+||++..||+|+||+++|+++|++|+.+.++.. +..++|+++||.++||+|++. ||..|+||.+|++|+
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~gl~~e~~~v~~~--~~~~~~~~~np~~~vP~L~~~-~g~~l~eS~aI~~y~ 70 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLAGITVELREVELK--NKPAEMLAASPKGTVPVLVLG-NGTVIEESLDIMRWA 70 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHcCCCcEEEEeCCC--CCCHHHHHHCCCCCCCEEEEC-CCcEEecHHHHHHhh
Confidence 799999999999999999999999999998643 235789999999999999862 588999999999997
No 28
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=99.64 E-value=1.6e-16 Score=144.43 Aligned_cols=158 Identities=20% Similarity=0.205 Sum_probs=102.8
Q ss_pred EEeecCCCcCHHHHHHHHHHcCCCeeEEEcCCCCCCChhHHHhhCCCCCcCeEE-cCCCCeeEecchhHHHHHhhccCCC
Q 019711 142 EIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMV-DPNTGVSMYESDNIIKYLVGKYGDG 220 (337)
Q Consensus 142 ~LY~~~~cP~c~kVr~~L~elgl~ye~~~v~~~~~~~~~e~~~~np~~kVP~Lv-d~~~g~~l~ES~aIi~YL~~~y~~~ 220 (337)
+||++..||||+|||++|+++|++|+.++++. +++. ...++||.++||+|+ | +|..|+||.+|++||+++|+..
T Consensus 1 ~Ly~~~~sp~~~kvr~~L~~~gl~~e~~~~~~-~~~~--~~~~~np~g~vP~l~~~--~g~~l~es~~I~~yL~~~~~~~ 75 (209)
T TIGR02182 1 KLYIYDHCPFCVRARMIFGLKNIPVEKHVLLN-DDEE--TPIRMIGAKQVPILQKD--DGRAMPESLDIVAYFDKLDGEP 75 (209)
T ss_pred CeecCCCCChHHHHHHHHHHcCCCeEEEECCC-Ccch--hHHHhcCCCCcceEEee--CCeEeccHHHHHHHHHHhCCCc
Confidence 58999999999999999999999999988743 2322 348999999999997 6 8899999999999999999865
Q ss_pred Ccchh--h-hhhhhhhhhhhhhh-hccccCCccCC-----------------------------CCCC--CCCchhhh--
Q 019711 221 SVPFM--L-SLGLLTTLTEGFAM-IGRLGKGQSYT-----------------------------PAKL--PPKPLEVW-- 263 (337)
Q Consensus 221 ~~P~~--~-~~~al~~l~~~l~~-~~~~~~g~~~~-----------------------------~~~~--~~k~L~l~-- 263 (337)
.++.. . ..+++..+..++.. +.....+.... ++.. -.+.+..+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~le~ 155 (209)
T TIGR02182 76 LLTGKVSPEIEAWLRKVTGYANKLLLPRFAKSDLPEFATQSARKYFTDKKEASAGNFSALLNHTPGLLEEINADLEELDK 155 (209)
T ss_pred cCCCCChHHHHHHHHHHHHHhhhhhccccccCCCcccCCHHHHHHHHHHHHHhcCCHHHHHccCHHHHHHHHHHHHHHHH
Confidence 33321 1 11222222222211 00000000000 0000 01223333
Q ss_pred hhcCCCcchhhHhHHhhccCceEEEEcCCC----CC-ChHHHHHHcC
Q 019711 264 AYEGSPFCKVVREVLVELELPHLQRSCARG----SP-KRQILIEKAK 305 (337)
Q Consensus 264 ~l~~sPf~~gvr~tLADl~L~~~l~~v~~g----~p-k~~e~~~~~p 305 (337)
.+..++|+.+ ++|+||+.+...+.++... -+ +..+|+++..
T Consensus 156 ~L~~~~~l~g-~~TiADi~l~~~l~~~~~~~~~~~p~~l~~w~~Ri~ 201 (209)
T TIGR02182 156 LIDGPNAVNG-ELSEDDILVFPLLRNLTLVAGINWPSRVADYLDNMS 201 (209)
T ss_pred HHhCccccCC-CCCHHHHHHHHHhcCeeeecCCCCChHHHHHHHHHH
Confidence 5678899954 6999999998777666531 24 7888888764
No 29
>cd03076 GST_N_Pi GST_N family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an increase in JNK activity, thereby promoting apoptosis. GSTP1 is expressed in various tumors and is the predominant GST in a w
Probab=99.64 E-value=4.2e-16 Score=118.59 Aligned_cols=73 Identities=14% Similarity=0.125 Sum_probs=65.6
Q ss_pred ceEEeecCCCcCHHHHHHHHHHcCCCeeEEEcCCCCCCChhHHHhhCCCCCcCeEEcCCCCeeEecchhHHHHHhhc
Q 019711 140 PIEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLVGK 216 (337)
Q Consensus 140 ~l~LY~~~~cP~c~kVr~~L~elgl~ye~~~v~~~~~~~~~e~~~~np~~kVP~Lvd~~~g~~l~ES~aIi~YL~~~ 216 (337)
+++||+++.|++|++||++|+++|++|+.+.++. +++.++|+++||.++||+|+| +|..|+||.||++||+++
T Consensus 1 ~~~Ly~~~~~~~~~~v~~~L~~~~i~~e~~~v~~--~~~~~~~~~~~p~~~vP~l~~--~~~~l~es~aI~~yL~~~ 73 (73)
T cd03076 1 PYTLTYFPVRGRAEAIRLLLADQGISWEEERVTY--EEWQESLKPKMLFGQLPCFKD--GDLTLVQSNAILRHLGRK 73 (73)
T ss_pred CcEEEEeCCcchHHHHHHHHHHcCCCCEEEEecH--HHhhhhhhccCCCCCCCEEEE--CCEEEEcHHHHHHHHhcC
Confidence 4789999999999999999999999999998853 345568999999999999998 789999999999999864
No 30
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=99.63 E-value=7.3e-16 Score=117.80 Aligned_cols=75 Identities=25% Similarity=0.449 Sum_probs=63.5
Q ss_pred ceEEeecCCCcCHHHHHHHHHHcCCCeeEEEcCCCCCCChhHHHhhCCCCCcCeEEcCC--CCeeEecchhHHHHHhhcc
Q 019711 140 PIEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPN--TGVSMYESDNIIKYLVGKY 217 (337)
Q Consensus 140 ~l~LY~~~~cP~c~kVr~~L~elgl~ye~~~v~~~~~~~~~e~~~~np~~kVP~Lvd~~--~g~~l~ES~aIi~YL~~~y 217 (337)
.++||+++.||||+||+.+|.++||+|+.+.++. ...+++ +.||.++||+|++.+ +|.+|+||.+|++||+++.
T Consensus 1 ~i~Ly~~~~~p~c~kv~~~L~~~gi~y~~~~~~~---~~~~~~-~~~~~~~vP~l~~~~~~~~~~l~eS~~I~~yL~~~~ 76 (77)
T cd03040 1 KITLYQYKTCPFCCKVRAFLDYHGIPYEVVEVNP---VSRKEI-KWSSYKKVPILRVESGGDGQQLVDSSVIISTLKTYL 76 (77)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCCCceEEEECCc---hhHHHH-HHhCCCccCEEEECCCCCccEEEcHHHHHHHHHHHc
Confidence 3799999999999999999999999999998742 223444 679999999998642 4789999999999999876
Q ss_pred C
Q 019711 218 G 218 (337)
Q Consensus 218 ~ 218 (337)
|
T Consensus 77 ~ 77 (77)
T cd03040 77 G 77 (77)
T ss_pred C
Confidence 4
No 31
>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.
Probab=99.63 E-value=1e-15 Score=115.11 Aligned_cols=72 Identities=25% Similarity=0.386 Sum_probs=66.0
Q ss_pred eEEeecCCCcCHHHHHHHHHHcCCCeeEEEcC-CCCCCChhHHHhhCCCCCcCeEEcCCCCeeEecchhHHHHHh
Q 019711 141 IEIYEYESCPFCRKVREIVAVLDLDVLYYPCP-RNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLV 214 (337)
Q Consensus 141 l~LY~~~~cP~c~kVr~~L~elgl~ye~~~v~-~~~~~~~~e~~~~np~~kVP~Lvd~~~g~~l~ES~aIi~YL~ 214 (337)
|+||++..|++|+++|++|+++|++|+.+.++ .++++..++|.++||.++||+|++ +|..++||.||++||+
T Consensus 1 ~~L~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~--~~~~l~es~aI~~yL~ 73 (73)
T cd03042 1 MILYSYFRSSASYRVRIALNLKGLDYEYVPVNLLKGEQLSPAYRALNPQGLVPTLVI--DGLVLTQSLAIIEYLD 73 (73)
T ss_pred CEEecCCCCcchHHHHHHHHHcCCCCeEEEecCccCCcCChHHHHhCCCCCCCEEEE--CCEEEEcHHHHHHHhC
Confidence 58999999999999999999999999999986 455667789999999999999998 7889999999999985
No 32
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=99.63 E-value=1.1e-15 Score=116.60 Aligned_cols=73 Identities=22% Similarity=0.300 Sum_probs=66.0
Q ss_pred EEeecCCCcCHHHHHHHHHHcCCCeeEEEcCCCCCCChhHHHhhCCCCCcCeEEcCCCCeeEecchhHHHHHhh
Q 019711 142 EIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLVG 215 (337)
Q Consensus 142 ~LY~~~~cP~c~kVr~~L~elgl~ye~~~v~~~~~~~~~e~~~~np~~kVP~Lvd~~~g~~l~ES~aIi~YL~~ 215 (337)
+||+++.||+|++++++|+++|++|+.+.++...++..++|+++||.++||+|+++ +|..|+||.||++||++
T Consensus 2 ~Ly~~~~~~~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~nP~~~vP~L~~~-~g~~l~es~aI~~yL~~ 74 (75)
T cd03044 2 TLYTYPGNPRSLKILAAAKYNGLDVEIVDFQPGKENKTPEFLKKFPLGKVPAFEGA-DGFCLFESNAIAYYVAN 74 (75)
T ss_pred eEecCCCCccHHHHHHHHHHcCCceEEEecccccccCCHHHHHhCCCCCCCEEEcC-CCCEEeeHHHHHHHHhh
Confidence 69999999999999999999999999999975434678899999999999999963 57899999999999985
No 33
>cd03046 GST_N_GTT1_like GST_N family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endoplasmic reticulum. Its expression is induced after diauxic shift and remains high throughout the stationary phase. S. pomb
Probab=99.63 E-value=1.3e-15 Score=115.57 Aligned_cols=75 Identities=25% Similarity=0.357 Sum_probs=67.4
Q ss_pred eEEeecCCCcCHHHHHHHHHHcCCCeeEEEcC-CCCCCChhHHHhhCCCCCcCeEEcCCCCeeEecchhHHHHHhhccC
Q 019711 141 IEIYEYESCPFCRKVREIVAVLDLDVLYYPCP-RNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLVGKYG 218 (337)
Q Consensus 141 l~LY~~~~cP~c~kVr~~L~elgl~ye~~~v~-~~~~~~~~e~~~~np~~kVP~Lvd~~~g~~l~ES~aIi~YL~~~y~ 218 (337)
++||+++. ++|++|+++|+++|++|+.+.++ .++++..++|+++||.++||+|++ +|..|+||.+|++||+++|+
T Consensus 1 ~~l~~~~~-~~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~--~g~~l~es~aI~~yL~~~~~ 76 (76)
T cd03046 1 ITLYHLPR-SRSFRILWLLEELGLPYELVLYDRGPGEQAPPEYLAINPLGKVPVLVD--GDLVLTESAAIILYLAEKYG 76 (76)
T ss_pred CEEEeCCC-CChHHHHHHHHHcCCCcEEEEeCCCCCccCCHHHHhcCCCCCCCEEEE--CCEEEEcHHHHHHHHHHhCc
Confidence 57999876 68999999999999999999986 335667889999999999999998 78999999999999999885
No 34
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=99.63 E-value=9.6e-16 Score=115.46 Aligned_cols=71 Identities=30% Similarity=0.524 Sum_probs=60.8
Q ss_pred eEEeecCCCcCHHHHHHHHHHcCCCeeEEEcCCCCCCChhHHHhhCCCCCcCeEEcCCCCeeEecchhHHHHHhh
Q 019711 141 IEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLVG 215 (337)
Q Consensus 141 l~LY~~~~cP~c~kVr~~L~elgl~ye~~~v~~~~~~~~~e~~~~np~~kVP~Lvd~~~g~~l~ES~aIi~YL~~ 215 (337)
|+||++..||||+|||++|.++|++|+.+.++.. + .....+.+|.++||+|++. +|..++||.+|++||++
T Consensus 1 ~~Ly~~~~~p~~~rvr~~L~~~gl~~~~~~~~~~-~--~~~~~~~~~~~~vP~L~~~-~~~~l~es~aI~~yL~~ 71 (71)
T cd03037 1 MKLYIYEHCPFCVKARMIAGLKNIPVEQIILQND-D--EATPIRMIGAKQVPILEKD-DGSFMAESLDIVAFIDE 71 (71)
T ss_pred CceEecCCCcHhHHHHHHHHHcCCCeEEEECCCC-c--hHHHHHhcCCCccCEEEeC-CCeEeehHHHHHHHHhC
Confidence 5799999999999999999999999999988532 2 2245688999999999862 48899999999999975
No 35
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=99.62 E-value=2.6e-15 Score=118.66 Aligned_cols=77 Identities=21% Similarity=0.300 Sum_probs=66.5
Q ss_pred CCCCCceEEeecCCCcCHHHHHHHHHHcCCCeeEEEcCCCCCCChhHHHhhCCCCCcCeEEcCCCCeeEecchhHHHHHh
Q 019711 135 PRPEKPIEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLV 214 (337)
Q Consensus 135 ~~~~~~l~LY~~~~cP~c~kVr~~L~elgl~ye~~~v~~~~~~~~~e~~~~np~~kVP~Lvd~~~g~~l~ES~aIi~YL~ 214 (337)
+...++++||++..||+|++|+++|+++|++|+.+.++.. +..++|.+.||.++||+|++. +|..|+||.+|++||+
T Consensus 13 ~~~~~~~~Ly~~~~sp~~~kv~~~L~~~gl~~~~~~v~~~--~~~~~~~~~np~~~vPvL~~~-~g~~l~eS~aI~~yLe 89 (89)
T cd03055 13 PPVPGIIRLYSMRFCPYAQRARLVLAAKNIPHEVININLK--DKPDWFLEKNPQGKVPALEID-EGKVVYESLIICEYLD 89 (89)
T ss_pred CCCCCcEEEEeCCCCchHHHHHHHHHHcCCCCeEEEeCCC--CCcHHHHhhCCCCCcCEEEEC-CCCEEECHHHHHHhhC
Confidence 3445679999999999999999999999999999998632 234679999999999999862 4789999999999995
No 36
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=99.62 E-value=2.5e-15 Score=119.78 Aligned_cols=70 Identities=13% Similarity=0.253 Sum_probs=62.4
Q ss_pred CCCcCHHHHHHHHHHcCCCeeEEEcCCCCCCChhHHHhhCCCCCcCeEEcCCCCeeEecchhHHHHHhhccCCC
Q 019711 147 ESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLVGKYGDG 220 (337)
Q Consensus 147 ~~cP~c~kVr~~L~elgl~ye~~~v~~~~~~~~~e~~~~np~~kVP~Lvd~~~g~~l~ES~aIi~YL~~~y~~~ 220 (337)
..||||++||++|.++||+|+.++|+... ..++|+++||.++||+|+| +|.+++||.+|++||+++|..+
T Consensus 20 g~cpf~~rvrl~L~eKgi~ye~~~vd~~~--~p~~~~~~nP~g~vPvL~~--~~~~i~eS~~I~eYLde~~~~~ 89 (91)
T cd03061 20 GNCPFCQRLFMVLWLKGVVFNVTTVDMKR--KPEDLKDLAPGTQPPFLLY--NGEVKTDNNKIEEFLEETLCPP 89 (91)
T ss_pred CCChhHHHHHHHHHHCCCceEEEEeCCCC--CCHHHHHhCCCCCCCEEEE--CCEEecCHHHHHHHHHHHccCC
Confidence 46999999999999999999999986332 3468999999999999998 7899999999999999998754
No 37
>TIGR00862 O-ClC intracellular chloride channel protein. These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney.
Probab=99.62 E-value=2e-16 Score=146.92 Aligned_cols=160 Identities=11% Similarity=0.061 Sum_probs=104.6
Q ss_pred cCCCcCHHHHHHHHHHcCCCeeEEEcCCCCCCChhHHHhhCCCCCcCeEEcCCCCeeEecchhHHHHHhhccCCCCcch-
Q 019711 146 YESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLVGKYGDGSVPF- 224 (337)
Q Consensus 146 ~~~cP~c~kVr~~L~elgl~ye~~~v~~~~~~~~~e~~~~np~~kVP~Lvd~~~g~~l~ES~aIi~YL~~~y~~~~~P~- 224 (337)
+..||+|++|+++|.++|++|+.+.|+.. +..++|+++||.++||+|+| +|.+|+||.+|++||+++|+..++|.
T Consensus 16 ~~~cp~~~rv~i~L~ekgi~~e~~~vd~~--~~~~~fl~inP~g~vPvL~~--~g~~l~ES~aI~eYL~e~~~~~~~p~l 91 (236)
T TIGR00862 16 IGNCPFSQRLFMILWLKGVVFNVTTVDLK--RKPEDLQNLAPGTHPPFLTY--NTEVKTDVNKIEEFLEETLCPPRYPKL 91 (236)
T ss_pred CCCCHhHHHHHHHHHHcCCCcEEEEECCC--CCCHHHHHHCcCCCCCEEEE--CCEEeecHHHHHHHHHHHcCCCCCCCC
Confidence 45799999999999999999999999633 23589999999999999998 88999999999999999997543343
Q ss_pred ---hhhhhhhh-hhhhhhhhhccccCCcc-CCCCCCC---CCchhhh--hh------------------cCCCcchhhHh
Q 019711 225 ---MLSLGLLT-TLTEGFAMIGRLGKGQS-YTPAKLP---PKPLEVW--AY------------------EGSPFCKVVRE 276 (337)
Q Consensus 225 ---~~~~~al~-~l~~~l~~~~~~~~g~~-~~~~~~~---~k~L~l~--~l------------------~~sPf~~gvr~ 276 (337)
+...+... .++..+..+. .+.. ...+... .+.+..+ .+ ..++|+.|+++
T Consensus 92 ~p~~~~~~~~~~~l~~~~~~~~---~~~~~~~~~~~~~~l~~~l~~Le~~L~~~~~~~~~~~~~~~~~~~~~~f~~Gd~~ 168 (236)
T TIGR00862 92 SPKHPESNTAGLDIFAKFSAYI---KNSNPEANDNLEKGLLKALKKLDDYLNSPLPEEIDEDSAEDEKVSRRKFLDGDEL 168 (236)
T ss_pred CCCCHHHHHHHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccCCCcccCCcc
Confidence 32222211 1222221111 1110 0000000 1222222 22 25899999999
Q ss_pred HHhhccCceEEEEcC------------CCCCChHHHHHHcCCCCccEEEc
Q 019711 277 VLVELELPHLQRSCA------------RGSPKRQILIEKAKHFQVPYLED 314 (337)
Q Consensus 277 tLADl~L~~~l~~v~------------~g~pk~~e~~~~~p~~qVP~L~d 314 (337)
|++|+.+...+.++. ..-+++..|+++. .+.|.+..
T Consensus 169 tlaD~~l~p~l~~l~~~~~~~~~~~i~~~~p~l~~w~~~~--~~~~sf~~ 216 (236)
T TIGR00862 169 TLADCNLLPKLHIVKVVAKKYRNFDIPAEFTGVWRYLSNA--YAREEFTN 216 (236)
T ss_pred chhhHHHHHHHHHHHHHHHHHhCcCccccCchHHHHHHHH--hccchHHh
Confidence 999998765532221 2237888999887 34555543
No 38
>PRK10357 putative glutathione S-transferase; Provisional
Probab=99.61 E-value=3.9e-16 Score=140.04 Aligned_cols=160 Identities=15% Similarity=0.101 Sum_probs=102.9
Q ss_pred eEEeecCCCcCHHHHHHHHHHcCCCeeEEEcCCCCCCChhHHHhhCCCCCcCeEEcCCCCeeEecchhHHHHHhhccCC-
Q 019711 141 IEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLVGKYGD- 219 (337)
Q Consensus 141 l~LY~~~~cP~c~kVr~~L~elgl~ye~~~v~~~~~~~~~e~~~~np~~kVP~Lvd~~~g~~l~ES~aIi~YL~~~y~~- 219 (337)
++||++..||++++|+++|+++||+|+.+.++.. ...+++.++||.++||+|++. +|..|+||.+|++||+++|++
T Consensus 1 ~~Ly~~~~s~~~~~v~~~L~~~gv~ye~~~~~~~--~~~~~~~~~nP~g~vP~L~~~-~g~~l~eS~aI~~yL~~~~~~~ 77 (202)
T PRK10357 1 MKLIGSYTSPFVRKISILLLEKGITFEFVNELPY--NADNGVAQYNPLGKVPALVTE-EGECWFDSPIIAEYIELLNVAP 77 (202)
T ss_pred CeeecCCCCchHHHHHHHHHHcCCCCeEEecCCC--CCchhhhhcCCccCCCeEEeC-CCCeeecHHHHHHHHHHhCCCC
Confidence 5899999999999999999999999999888521 123468889999999999831 788999999999999999865
Q ss_pred CCcchhhhhhhh-hhhhhhh----hh---hccc--cCCccCCCCCCC------CCchhhh--hhcCCCcchhhHhHHhhc
Q 019711 220 GSVPFMLSLGLL-TTLTEGF----AM---IGRL--GKGQSYTPAKLP------PKPLEVW--AYEGSPFCKVVREVLVEL 281 (337)
Q Consensus 220 ~~~P~~~~~~al-~~l~~~l----~~---~~~~--~~g~~~~~~~~~------~k~L~l~--~l~~sPf~~gvr~tLADl 281 (337)
.++|.+...++. ..+..+. .. ..+. ..+....+.... ...+..+ .+.+++ +.|+++|+||+
T Consensus 78 ~l~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~~~-l~Gd~~t~ADi 156 (202)
T PRK10357 78 AMLPRDPLAALRVRQLEALADGIMDAALVSVREQARPAAQQSEDELLRQREKINRSLDALEGYLVDGT-LKTDTVNLATI 156 (202)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHHHHHHHHHhhccCc-ccCCCcCHHHH
Confidence 377866554431 1111111 00 0010 001000000000 0112222 344567 99999999999
Q ss_pred cCceEEEEcC---------CCCCChHHHHHHc
Q 019711 282 ELPHLQRSCA---------RGSPKRQILIEKA 304 (337)
Q Consensus 282 ~L~~~l~~v~---------~g~pk~~e~~~~~ 304 (337)
.+.+.+.++. ..-++..+|+++.
T Consensus 157 ~l~~~l~~~~~~~~~~~~~~~~p~l~~~~~~i 188 (202)
T PRK10357 157 AIACAVGYLNFRRVAPGWCVDRPHLVKLVENL 188 (202)
T ss_pred HHHHHHHHHHhcccCcchhhcChHHHHHHHHH
Confidence 8765443221 1126777888766
No 39
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.59 E-value=4.2e-15 Score=112.41 Aligned_cols=71 Identities=23% Similarity=0.277 Sum_probs=62.9
Q ss_pred eEEeecCCCcCHHHHHHHHHH--cCCCeeEEEcCCCCCCChhHHHhhCCCCCcCeEEcCCCCeeEecchhHHHHHh
Q 019711 141 IEIYEYESCPFCRKVREIVAV--LDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLV 214 (337)
Q Consensus 141 l~LY~~~~cP~c~kVr~~L~e--lgl~ye~~~v~~~~~~~~~e~~~~np~~kVP~Lvd~~~g~~l~ES~aIi~YL~ 214 (337)
++||++..||+|+|||++|++ +|++|+.+.++. .++.++|+++||.++||+|+++ +|..|+||.||++||+
T Consensus 1 ~~Ly~~~~s~~~~~~~~~l~~~~~~i~~~~~~~~~--~~~~~~~~~~~p~~~vP~l~~~-~g~~l~es~aI~~yLe 73 (73)
T cd03049 1 MKLLYSPTSPYVRKVRVAAHETGLGDDVELVLVNP--WSDDESLLAVNPLGKIPALVLD-DGEALFDSRVICEYLD 73 (73)
T ss_pred CEEecCCCCcHHHHHHHHHHHhCCCCCcEEEEcCc--ccCChHHHHhCCCCCCCEEEEC-CCCEEECHHHHHhhhC
Confidence 589999999999999999999 899999998853 3456789999999999999842 7889999999999985
No 40
>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma
Probab=99.59 E-value=2.5e-15 Score=113.53 Aligned_cols=72 Identities=13% Similarity=0.071 Sum_probs=63.2
Q ss_pred eEEeecCCCcCHHHHHHHHHHcCCCeeEEEcCCCCCCChhHHHhhCCCCCcCeEEcCCCCeeEecchhHHHHHhh
Q 019711 141 IEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLVG 215 (337)
Q Consensus 141 l~LY~~~~cP~c~kVr~~L~elgl~ye~~~v~~~~~~~~~e~~~~np~~kVP~Lvd~~~g~~l~ES~aIi~YL~~ 215 (337)
++||+++.|++|++||++|+++|++|+.+.++... ...++|.++||.++||+|+| +|..|+||.||++||++
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~~~~~~-~~~~~~~~~~p~~~vP~L~~--~~~~l~es~aI~~yL~~ 72 (72)
T cd03039 1 YKLTYFNIRGRGEPIRLLLADAGVEYEDVRITYEE-WPELDLKPTLPFGQLPVLEI--DGKKLTQSNAILRYLAR 72 (72)
T ss_pred CEEEEEcCcchHHHHHHHHHHCCCCcEEEEeCHHH-hhhhhhccCCcCCCCCEEEE--CCEEEEecHHHHHHhhC
Confidence 58999999999999999999999999999986321 22345899999999999998 78999999999999974
No 41
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=99.59 E-value=2.7e-15 Score=116.88 Aligned_cols=69 Identities=25% Similarity=0.279 Sum_probs=59.5
Q ss_pred CCCcCHHHHHHHHHHcCCCeeEEEcC-CCCCCChhHHHhhCCCCCcCeEEcCCC-CeeEecchhHHHHHhhccC
Q 019711 147 ESCPFCRKVREIVAVLDLDVLYYPCP-RNGPNFRPKVLQMGGKKQFPYMVDPNT-GVSMYESDNIIKYLVGKYG 218 (337)
Q Consensus 147 ~~cP~c~kVr~~L~elgl~ye~~~v~-~~~~~~~~e~~~~np~~kVP~Lvd~~~-g~~l~ES~aIi~YL~~~y~ 218 (337)
..||+|+|||++|.++|++|+.+.++ .+.++..+++ ++||.++||+|++ + |..|+||.+|++||+++|+
T Consensus 14 ~~Sp~~~kv~~~L~~~~i~~~~~~~~~~~~~~~~~~~-~~~p~~~vP~L~~--~~~~~l~eS~aI~~yL~~~~p 84 (84)
T cd03038 14 AFSPNVWKTRLALNHKGLEYKTVPVEFPDIPPILGEL-TSGGFYTVPVIVD--GSGEVIGDSFAIAEYLEEAYP 84 (84)
T ss_pred CcCChhHHHHHHHHhCCCCCeEEEecCCCcccccccc-cCCCCceeCeEEE--CCCCEEeCHHHHHHHHHHhCc
Confidence 57999999999999999999999886 3334444556 8999999999998 5 8899999999999999885
No 42
>cd03080 GST_N_Metaxin_like GST_N family, Metaxin subfamily, Metaxin-like proteins; a heterogenous group of proteins, predominantly uncharacterized, with similarity to metaxins and GSTs. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. One characterized member of this subgroup is a novel GST from Rhodococcus with toluene o-monooxygenase and gamma-glutamylcysteine synthetase activities. Also members are the cadmium-inducible lysosomal protein CDR-1 and its homologs from C. elegans, and the failed axon connections (fax) protein from Drosophila. CDR-1 is an integral membrane protein that functions to protect against cadmium toxicity and may also have a role in osmoregulation to maintain salt balance in C. ele
Probab=99.58 E-value=4.1e-15 Score=113.59 Aligned_cols=68 Identities=25% Similarity=0.406 Sum_probs=61.2
Q ss_pred ceEEeecC-------CCcCHHHHHHHHHHcCCCeeEEEcCCCCCCChhHHHhhCCCCCcCeEEcCCCCeeEecchhHHHH
Q 019711 140 PIEIYEYE-------SCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKY 212 (337)
Q Consensus 140 ~l~LY~~~-------~cP~c~kVr~~L~elgl~ye~~~v~~~~~~~~~e~~~~np~~kVP~Lvd~~~g~~l~ES~aIi~Y 212 (337)
+++||++. .||+|+||+++|+++|++|+.+.++. .++||.++||+|++ +|..|+||.+|++|
T Consensus 1 m~~L~~~~~~~~~~~~sp~~~~v~~~L~~~gi~~~~~~~~~---------~~~~p~g~vPvl~~--~g~~l~eS~~I~~y 69 (75)
T cd03080 1 MITLYQFPRAFGVPSLSPFCLKVETFLRMAGIPYENKFGGL---------AKRSPKGKLPFIEL--NGEKIADSELIIDH 69 (75)
T ss_pred CEEEEecCCCCCCCCCCHHHHHHHHHHHHCCCCcEEeecCc---------ccCCCCCCCCEEEE--CCEEEcCHHHHHHH
Confidence 47999998 47999999999999999999988732 27899999999998 78999999999999
Q ss_pred HhhccC
Q 019711 213 LVGKYG 218 (337)
Q Consensus 213 L~~~y~ 218 (337)
|+++||
T Consensus 70 L~~~~~ 75 (75)
T cd03080 70 LEEKYG 75 (75)
T ss_pred HHHHcC
Confidence 999986
No 43
>PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B ....
Probab=99.57 E-value=3.1e-15 Score=113.14 Aligned_cols=68 Identities=28% Similarity=0.454 Sum_probs=58.7
Q ss_pred CCcCHHHHHHHHHHcCCCeeEEEcC--CCCCCChhHHHhhCCCCCcCeEEcCCCCeeEecchhHHHHHhhc
Q 019711 148 SCPFCRKVREIVAVLDLDVLYYPCP--RNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLVGK 216 (337)
Q Consensus 148 ~cP~c~kVr~~L~elgl~ye~~~v~--~~~~~~~~e~~~~np~~kVP~Lvd~~~g~~l~ES~aIi~YL~~~ 216 (337)
.||||+||+++|+++|++|+...++ .++.+..++|.++||.++||+|+|+ +|.+++||.+|++||+++
T Consensus 1 ~sP~a~Rv~i~l~~~gl~~~~~~v~~~~~~~~~~~~~~~~~p~~~VP~L~~~-~g~vi~eS~~I~~yL~~~ 70 (70)
T PF13409_consen 1 FSPFAHRVRIALEEKGLPYEIKVVPLIPKGEQKPPEFLALNPRGKVPVLVDP-DGTVINESLAILEYLEEQ 70 (70)
T ss_dssp T-HHHHHHHHHHHHHTGTCEEEEEETTTTBCTTCHBHHHHSTT-SSSEEEET-TTEEEESHHHHHHHHHHT
T ss_pred CchHhHHHHHHHHHhCCCCEEEEEeeecCccccChhhhccCcCeEEEEEEEC-CCCEeeCHHHHHHHHhcC
Confidence 4999999999999999999998873 4556667899999999999999975 788999999999999874
No 44
>PF02798 GST_N: Glutathione S-transferase, N-terminal domain; InterPro: IPR004045 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of Cephalopoda is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Soluble GSTs activate glutathione (GSH) to GS-. In many GSTs, this is accomplished by a Tyr at H-bonding distance from the sulphur of GSH. These enzymes catalyse nucleophilic attack by reduced glutathione (GSH) on nonpolar compounds that contain an electrophillic carbon, nitrogen, or sulphur atom []. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold, with each monomer composed of two distinct domains []. The N-terminal domain forms a thioredoxin-like fold that binds the glutathione moiety, while the C-terminal domain contains several hydrophobic alpha-helices that specifically bind hydrophobic substrates. This entry represents the N-terminal domain of GST.; GO: 0005515 protein binding; PDB: 2VCT_H 2WJU_B 4ACS_A 1BYE_D 1AXD_B 2VCV_P 1TDI_A 1JLV_D 1Y6E_A 1U88_B ....
Probab=99.55 E-value=1.2e-14 Score=111.71 Aligned_cols=74 Identities=19% Similarity=0.340 Sum_probs=63.3
Q ss_pred CceEEeecCCCcCHHHHHHHHHHcCCCeeEEEcC-CCCCCChhHHHhhCCC-CCcCeEEcCCCCeeEecchhHHHHHhh
Q 019711 139 KPIEIYEYESCPFCRKVREIVAVLDLDVLYYPCP-RNGPNFRPKVLQMGGK-KQFPYMVDPNTGVSMYESDNIIKYLVG 215 (337)
Q Consensus 139 ~~l~LY~~~~cP~c~kVr~~L~elgl~ye~~~v~-~~~~~~~~e~~~~np~-~kVP~Lvd~~~g~~l~ES~aIi~YL~~ 215 (337)
|+++||...+ +|.++|++|+++|++|+.+.++ ..+++++++|++.||. ++||+|+|. +|..|+||.||++||++
T Consensus 1 ~~l~l~~~~~--~~~~~r~~l~~~gv~~e~~~v~~~~~~~~~~e~~~~~p~~g~vP~l~~~-~~~~l~es~AI~~YLa~ 76 (76)
T PF02798_consen 1 MTLTLYNGRG--RSERIRLLLAEKGVEYEDVRVDFEKGEHKSPEFLAINPMFGKVPALEDG-DGFVLTESNAILRYLAR 76 (76)
T ss_dssp EEEEEESSST--TTHHHHHHHHHTT--EEEEEEETTTTGGGSHHHHHHTTTSSSSSEEEET-TTEEEESHHHHHHHHHH
T ss_pred CEEEEECCCC--chHHHHHHHHHhcccCceEEEecccccccchhhhhcccccceeeEEEEC-CCCEEEcHHHHHHHhCC
Confidence 4577777766 7999999999999999999997 5677777999999999 999999982 39999999999999985
No 45
>PLN02817 glutathione dehydrogenase (ascorbate)
Probab=99.55 E-value=3.7e-15 Score=140.74 Aligned_cols=158 Identities=15% Similarity=0.102 Sum_probs=102.4
Q ss_pred cCCCcCHHHHHHHHHHcCCCeeEEEcCCCCCCChhHHHhhCCCCCcCeEEcCCCCeeEecchhHHHHHhhccCCC-Ccch
Q 019711 146 YESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLVGKYGDG-SVPF 224 (337)
Q Consensus 146 ~~~cP~c~kVr~~L~elgl~ye~~~v~~~~~~~~~e~~~~np~~kVP~Lvd~~~g~~l~ES~aIi~YL~~~y~~~-~~P~ 224 (337)
.-.||||+||+++|+++||+|+.+.|+.. +..++|+++||.++||+|++ +|.+|+||.+|++||+++|+.. +.
T Consensus 70 ~g~cp~s~rV~i~L~ekgi~ye~~~vdl~--~~~~~fl~iNP~GkVPvL~~--d~~~L~ES~aI~~YL~e~~p~~~L~-- 143 (265)
T PLN02817 70 LGDCPFCQRVLLTLEEKHLPYDMKLVDLT--NKPEWFLKISPEGKVPVVKL--DEKWVADSDVITQALEEKYPDPPLA-- 143 (265)
T ss_pred CCCCcHHHHHHHHHHHcCCCCEEEEeCcC--cCCHHHHhhCCCCCCCEEEE--CCEEEecHHHHHHHHHHHCCCCCCC--
Confidence 33599999999999999999999988643 34678999999999999998 6779999999999999999864 32
Q ss_pred hhhhhh--hhhhhhhhhhhccccCCccCCCCCC--CCCchhhh--hhc-CCCcchhhHhHHhhccCceEEEEc-------
Q 019711 225 MLSLGL--LTTLTEGFAMIGRLGKGQSYTPAKL--PPKPLEVW--AYE-GSPFCKVVREVLVELELPHLQRSC------- 290 (337)
Q Consensus 225 ~~~~~a--l~~l~~~l~~~~~~~~g~~~~~~~~--~~k~L~l~--~l~-~sPf~~gvr~tLADl~L~~~l~~v------- 290 (337)
+..+++ ...+...+..... ......... -.+.+..+ .+. +++|+.|+++++||+.+...+..+
T Consensus 144 ~~~era~i~~~l~~~~~~~~~---~~~~~~~~~~~l~~~l~~LE~~L~~~g~yl~Gd~~SlADi~l~p~L~~l~~~~~~~ 220 (265)
T PLN02817 144 TPPEKASVGSKIFSTFIGFLK---SKDPGDGTEQALLDELTSFDDYIKENGPFINGEKISAADLSLGPKLYHLEIALGHY 220 (265)
T ss_pred CHHHHHHHHHHHHHHHHHHhc---cCCcchHHHHHHHHHHHHHHHHHhcCCCeeCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 222333 1222221111111 100000000 01222333 333 469999999999999875432211
Q ss_pred -----CCCCCChHHHHHHcCCCCccEEEc
Q 019711 291 -----ARGSPKRQILIEKAKHFQVPYLED 314 (337)
Q Consensus 291 -----~~g~pk~~e~~~~~p~~qVP~L~d 314 (337)
...-++..+|+++.- +.|.+..
T Consensus 221 ~~~~i~~~~P~L~~w~~ri~--~rps~~~ 247 (265)
T PLN02817 221 KNWSVPDSLPFVKSYMKNIF--SMESFVK 247 (265)
T ss_pred cCCCccccCHHHHHHHHHHh--cchhHhh
Confidence 122378889988773 3566544
No 46
>cd03075 GST_N_Mu GST_N family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the most abundant GSTs in human liver, skeletal muscle and brain, and are believed to provide protection against diseases inc
Probab=99.54 E-value=2.4e-14 Score=111.70 Aligned_cols=74 Identities=16% Similarity=0.295 Sum_probs=62.5
Q ss_pred EEeecCCCcCHHHHHHHHHHcCCCeeEEEcC-CCCCCC-hhHHHhh-----CCCCCcCeEEcCCCCeeEecchhHHHHHh
Q 019711 142 EIYEYESCPFCRKVREIVAVLDLDVLYYPCP-RNGPNF-RPKVLQM-----GGKKQFPYMVDPNTGVSMYESDNIIKYLV 214 (337)
Q Consensus 142 ~LY~~~~cP~c~kVr~~L~elgl~ye~~~v~-~~~~~~-~~e~~~~-----np~~kVP~Lvd~~~g~~l~ES~aIi~YL~ 214 (337)
+||++..+++|++||++|+++|++|+.+.|+ .+++++ .+++.+. +|.++||+|+| ||..|+||.||++||+
T Consensus 2 ~l~y~~~~~~~~~~~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~~~~~~~~P~g~vP~L~~--~g~~l~ES~AIl~YLa 79 (82)
T cd03075 2 TLGYWDIRGLAQPIRLLLEYTGEKYEEKRYELGDAPDYDRSQWLNEKFKLGLDFPNLPYYID--GDVKLTQSNAILRYIA 79 (82)
T ss_pred EEEEeCCccccHHHHHHHHHcCCCcEEEEeccCCccccchHhhhccchhcCCcCCCCCEEEE--CCEEEeehHHHHHHHh
Confidence 6899998999999999999999999999996 444443 3555432 29999999998 8899999999999999
Q ss_pred hcc
Q 019711 215 GKY 217 (337)
Q Consensus 215 ~~y 217 (337)
++|
T Consensus 80 ~~~ 82 (82)
T cd03075 80 RKH 82 (82)
T ss_pred hcC
Confidence 876
No 47
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=99.53 E-value=3.7e-14 Score=103.49 Aligned_cols=71 Identities=21% Similarity=0.330 Sum_probs=62.3
Q ss_pred eEEeecCCCcCHHHHHHHHHHcCCCeeEEEcCCCCCCChhHHHhhCCCCCcCeEEcCCCCeeEecchhHHHHHh
Q 019711 141 IEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLV 214 (337)
Q Consensus 141 l~LY~~~~cP~c~kVr~~L~elgl~ye~~~v~~~~~~~~~e~~~~np~~kVP~Lvd~~~g~~l~ES~aIi~YL~ 214 (337)
++||++..||+|++++++|+++|++|+.+.++....... ++.+.+|.+++|+|++ +|..++||.+|++||+
T Consensus 1 ~~ly~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~P~l~~--~~~~~~es~~I~~yl~ 71 (71)
T cd00570 1 LKLYYFPGSPRSLRVRLALEEKGLPYELVPVDLGEGEQE-EFLALNPLGKVPVLED--GGLVLTESLAILEYLA 71 (71)
T ss_pred CEEEeCCCCccHHHHHHHHHHcCCCcEEEEeCCCCCCCH-HHHhcCCCCCCCEEEE--CCEEEEcHHHHHHHhC
Confidence 479999999999999999999999999999863322222 6899999999999998 7899999999999985
No 48
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.53 E-value=2.6e-14 Score=109.79 Aligned_cols=76 Identities=64% Similarity=1.089 Sum_probs=69.4
Q ss_pred hhhhhhcCCCcchhhHhHHhhccCceEEEEcCCCCCChHHHHHHcCCCCccEEEcCCCCeeeecHHHHHHHHHHHh
Q 019711 260 LEVWAYEGSPFCKVVREVLVELELPHLQRSCARGSPKRQILIEKAKHFQVPYLEDPNTGVQMFESADIVEYLRATY 335 (337)
Q Consensus 260 L~l~~l~~sPf~~gvr~tLADl~L~~~l~~v~~g~pk~~e~~~~~p~~qVP~L~d~~~g~~l~ES~~I~~YL~~~y 335 (337)
+++|.+..||||.++++.|.+++++|+...+..+.....++.+.||.++||+|+++++|..++||.+|++||+++|
T Consensus 2 ~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~v~~~~~~~~~~~~~~p~~~vP~l~~~~~~~~l~es~~I~~yL~~~~ 77 (77)
T cd03041 2 LELYEFEGSPFCRLVREVLTELELDVILYPCPKGSPKRDKFLEKGGKVQVPYLVDPNTGVQMFESADIVKYLFKTY 77 (77)
T ss_pred ceEecCCCCchHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHhCCCCcccEEEeCCCCeEEEcHHHHHHHHHHhC
Confidence 5788889999999999999999999999999776556788999999999999998666899999999999999987
No 49
>KOG0406 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=3.3e-14 Score=130.58 Aligned_cols=186 Identities=16% Similarity=0.194 Sum_probs=127.5
Q ss_pred CceEEeecCCCcCHHHHHHHHHHcCCCeeEEEcCCCCCCChhHHHhhC-CCCCcCeEEcCCCCeeEecchhHHHHHhhcc
Q 019711 139 KPIEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMG-GKKQFPYMVDPNTGVSMYESDNIIKYLVGKY 217 (337)
Q Consensus 139 ~~l~LY~~~~cP~c~kVr~~L~elgl~ye~~~v~~~~~~~~~e~~~~n-p~~kVP~Lvd~~~g~~l~ES~aIi~YL~~~y 217 (337)
..++||++..|||.+||+++|+++||+||+++++..+ +.+.+++.| +.+|||+|++ +|..|+||..|++||++.|
T Consensus 8 ~~vrL~~~w~sPfa~R~~iaL~~KgI~yE~veedl~~--Ks~~ll~~np~hkKVPvL~H--n~k~i~ESliiveYiDe~w 83 (231)
T KOG0406|consen 8 GTVKLLGMWFSPFAQRVRIALKLKGIPYEYVEEDLTN--KSEWLLEKNPVHKKVPVLEH--NGKPICESLIIVEYIDETW 83 (231)
T ss_pred CeEEEEEeecChHHHHHHHHHHhcCCceEEEecCCCC--CCHHHHHhccccccCCEEEE--CCceehhhHHHHHHHHhhc
Confidence 4599999999999999999999999999999986433 677899999 7999999998 8888999999999999999
Q ss_pred CC--CCcchhhhhhhhhhhh-hhhhh----hccccCCccCCCCC--CC---CCchhhh--hhc-CCCcchhhHhHHhhcc
Q 019711 218 GD--GSVPFMLSLGLLTTLT-EGFAM----IGRLGKGQSYTPAK--LP---PKPLEVW--AYE-GSPFCKVVREVLVELE 282 (337)
Q Consensus 218 ~~--~~~P~~~~~~al~~l~-~~l~~----~~~~~~g~~~~~~~--~~---~k~L~l~--~l~-~sPf~~gvr~tLADl~ 282 (337)
.+ .++|+|+.+|+...+. ..+.. ..+......-.++. .. ...+..+ .+. +++|.-|..+.+.|+.
T Consensus 84 ~~~~~iLP~DPy~Ra~arfwa~~id~~~~~~~~~~~~~~~~e~~~~~~~e~~e~l~~lE~el~k~k~~fgG~~~G~vDi~ 163 (231)
T KOG0406|consen 84 PSGPPILPSDPYERAQARFWAEYIDKKVFFVGRFVVAAKGGEEQEAAKEELREALKVLEEELGKGKDFFGGETIGFVDIA 163 (231)
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcCHhhhh
Confidence 84 4899999888853322 22211 11111010000100 00 1222222 233 6788888888888887
Q ss_pred Cc-eEEE------------Ec-CCCCCChHHHHHHcCCCCccEEEcCCCCeeeecHHHHHHHHHHHh
Q 019711 283 LP-HLQR------------SC-ARGSPKRQILIEKAKHFQVPYLEDPNTGVQMFESADIVEYLRATY 335 (337)
Q Consensus 283 L~-~~l~------------~v-~~g~pk~~e~~~~~p~~qVP~L~d~~~g~~l~ES~~I~~YL~~~y 335 (337)
+. .... .+ ...-|++..|.+++- +.|.+.. .+.++..+++|+.+..
T Consensus 164 ~~p~~~~~~~~~~~~~~~~~~~~~~~P~L~~W~~~~~--~~~~V~~-----~~p~~e~~~e~~~~~~ 223 (231)
T KOG0406|consen 164 IGPSFERWLAVLEKFGGVKFIIEEETPKLIKWIKRMK--EDEAVKA-----VLPDSEKVVEFMKKYR 223 (231)
T ss_pred HHhhHHHHHHHHHHhcCcccCCCCCCccHHHHHHHHh--cChhHHh-----hcCCHHHHHHHHHHHH
Confidence 74 2111 11 122389999999883 3455433 3777888888887654
No 50
>cd03077 GST_N_Alpha GST_N family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Alpha subfamily is composed of eukaryotic GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GSTA3-3 catalyzes the isomerization of intermediates in steroid hormone biosynthesis. GSTA4-4 preferentially catalyzes the
Probab=99.51 E-value=6e-14 Score=108.49 Aligned_cols=71 Identities=14% Similarity=0.211 Sum_probs=61.5
Q ss_pred eEEeecCCCcCHHHHHHHHHHcCCCeeEEEcCCCCCCChhHHHhhC-----CCCCcCeEEcCCCCeeEecchhHHHHHhh
Q 019711 141 IEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMG-----GKKQFPYMVDPNTGVSMYESDNIIKYLVG 215 (337)
Q Consensus 141 l~LY~~~~cP~c~kVr~~L~elgl~ye~~~v~~~~~~~~~e~~~~n-----p~~kVP~Lvd~~~g~~l~ES~aIi~YL~~ 215 (337)
++||+++.+++|++|+++|+++|++|+.+.++. .++|.+.+ |.++||+|++ ||..|+||.||++||++
T Consensus 2 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~v~~-----~~~~~~~~~~~~~~~g~vP~L~~--~g~~l~ES~AI~~YL~~ 74 (79)
T cd03077 2 PVLHYFNGRGRMESIRWLLAAAGVEFEEKFIES-----AEDLEKLKKDGSLMFQQVPMVEI--DGMKLVQTRAILNYIAG 74 (79)
T ss_pred CEEEEeCCCChHHHHHHHHHHcCCCcEEEEecc-----HHHHHhhccccCCCCCCCCEEEE--CCEEEeeHHHHHHHHHH
Confidence 579999999999999999999999999998853 23444444 5899999998 78999999999999999
Q ss_pred ccC
Q 019711 216 KYG 218 (337)
Q Consensus 216 ~y~ 218 (337)
+||
T Consensus 75 ~~~ 77 (79)
T cd03077 75 KYN 77 (79)
T ss_pred HcC
Confidence 987
No 51
>cd03043 GST_N_1 GST_N family, unknown subfamily 1; composed of uncharacterized proteins, predominantly from bacteria, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.48 E-value=1.2e-13 Score=105.13 Aligned_cols=68 Identities=18% Similarity=0.337 Sum_probs=60.0
Q ss_pred ecCCCcCHHHHHHHHHHcCCCeeEEEcCCCCCCChhHHHhhCCCCCcCeEEcCCCCeeEecchhHHHHHh
Q 019711 145 EYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLV 214 (337)
Q Consensus 145 ~~~~cP~c~kVr~~L~elgl~ye~~~v~~~~~~~~~e~~~~np~~kVP~Lvd~~~g~~l~ES~aIi~YL~ 214 (337)
....||+|++|+++|+++|++|+.+.++....+..++|+++||.++||+|++ +|..|+||.+|++||+
T Consensus 6 ~~~~s~~s~~v~~~L~~~gl~~e~~~v~~~~~~~~~~~~~~nP~g~vP~L~~--~g~~l~eS~aI~~YL~ 73 (73)
T cd03043 6 NKNYSSWSLRPWLLLKAAGIPFEEILVPLYTPDTRARILEFSPTGKVPVLVD--GGIVVWDSLAICEYLA 73 (73)
T ss_pred CCCCCHHHHHHHHHHHHcCCCCEEEEeCCCCccccHHHHhhCCCCcCCEEEE--CCEEEEcHHHHHHHhC
Confidence 3457999999999999999999999986443446689999999999999998 7889999999999985
No 52
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=99.44 E-value=2.6e-13 Score=102.49 Aligned_cols=65 Identities=22% Similarity=0.385 Sum_probs=57.3
Q ss_pred eEEeecC-------CCcCHHHHHHHHHHcCCCeeEEEcCCCCCCChhHHHhhCCCCCcCeEEcCCCCeeEecchhHHHHH
Q 019711 141 IEIYEYE-------SCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYL 213 (337)
Q Consensus 141 l~LY~~~-------~cP~c~kVr~~L~elgl~ye~~~v~~~~~~~~~e~~~~np~~kVP~Lvd~~~g~~l~ES~aIi~YL 213 (337)
++||.+. .||+|++|+++|+++|++|+.+.++.. .+||.++||+|++ +|.+++||.+|++||
T Consensus 1 ~~L~~~~~~~~~~s~sp~~~~v~~~L~~~~i~~~~~~~~~~---------~~~p~g~vP~l~~--~g~~l~es~~I~~yL 69 (72)
T cd03054 1 LELYQWGRAFGLPSLSPECLKVETYLRMAGIPYEVVFSSNP---------WRSPTGKLPFLEL--NGEKIADSEKIIEYL 69 (72)
T ss_pred CEEEEeCCCCCCCCCCHHHHHHHHHHHhCCCceEEEecCCc---------ccCCCcccCEEEE--CCEEEcCHHHHHHHH
Confidence 3678777 899999999999999999999988421 2899999999998 789999999999999
Q ss_pred hhc
Q 019711 214 VGK 216 (337)
Q Consensus 214 ~~~ 216 (337)
+++
T Consensus 70 ~~~ 72 (72)
T cd03054 70 KKK 72 (72)
T ss_pred hhC
Confidence 875
No 53
>PTZ00057 glutathione s-transferase; Provisional
Probab=99.34 E-value=2.1e-12 Score=116.72 Aligned_cols=157 Identities=15% Similarity=0.101 Sum_probs=97.0
Q ss_pred ceEEeecCCCcCHHHHHHHHHHcCCCeeEEEcCCCCCCChhHHH--------hhCCCCCcCeEEcCCCCeeEecchhHHH
Q 019711 140 PIEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVL--------QMGGKKQFPYMVDPNTGVSMYESDNIIK 211 (337)
Q Consensus 140 ~l~LY~~~~cP~c~kVr~~L~elgl~ye~~~v~~~~~~~~~e~~--------~~np~~kVP~Lvd~~~g~~l~ES~aIi~ 211 (337)
+++||+++.+++|++||++|+++|++|+.+.+. ++. ++|. +.||.++||+|++ ||..|+||.||++
T Consensus 4 ~~~L~y~~~~~~~~~vrl~L~~~gi~ye~~~~~---~~~-~~~~~~~~~~~~~~nP~g~vP~L~~--~~~~l~eS~AI~~ 77 (205)
T PTZ00057 4 EIVLYYFDARGKAELIRLIFAYLGIEYTDKRFG---ENG-DAFIEFKNFKKEKDTPFEQVPILEM--DNIIFAQSQAIVR 77 (205)
T ss_pred ceEEEecCCCcchHHHHHHHHHcCCCeEEEecc---ccc-hHHHHHHhccccCCCCCCCCCEEEE--CCEEEecHHHHHH
Confidence 489999999999999999999999999998763 222 2343 4899999999998 8899999999999
Q ss_pred HHhhccCCCCcchhhhhhhhhh-hhhhhhhh-ccccCCccCCCCC---C---CCCchhhh--hhc--CCCcchhhHhHHh
Q 019711 212 YLVGKYGDGSVPFMLSLGLLTT-LTEGFAMI-GRLGKGQSYTPAK---L---PPKPLEVW--AYE--GSPFCKVVREVLV 279 (337)
Q Consensus 212 YL~~~y~~~~~P~~~~~~al~~-l~~~l~~~-~~~~~g~~~~~~~---~---~~k~L~l~--~l~--~sPf~~gvr~tLA 279 (337)
||+++|+.. +.+...++... +...+... ..........+.. . -.+.+..+ .+. +++|+.|+++|+|
T Consensus 78 YLa~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~Gd~~T~A 155 (205)
T PTZ00057 78 YLSKKYKIC--GESELNEFYADMIFCGVQDIHYKFNNTNLFKQNETTFLNEELPKWSGYFENILKKNHCNYFVGDNLTYA 155 (205)
T ss_pred HHHHHcCCC--CCCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeeCCcccHH
Confidence 999999742 22222222211 11111110 0000000000000 0 01222333 233 3489999999999
Q ss_pred hccCceEEEEcC------CC-CCChHHHHHHc
Q 019711 280 ELELPHLQRSCA------RG-SPKRQILIEKA 304 (337)
Q Consensus 280 Dl~L~~~l~~v~------~g-~pk~~e~~~~~ 304 (337)
|+.+...+.++. .. -|+..+|.++.
T Consensus 156 D~~l~~~~~~~~~~~~~~l~~~P~l~~~~~r~ 187 (205)
T PTZ00057 156 DLAVFNLYDDIETKYPNSLKNFPLLKAHNEFI 187 (205)
T ss_pred HHHHHHHHHHHHHhChhhhccChhHHHHHHHH
Confidence 998754332211 11 16777777765
No 54
>cd03048 GST_N_Ure2p_like GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and
Probab=99.34 E-value=3.7e-12 Score=98.24 Aligned_cols=77 Identities=26% Similarity=0.365 Sum_probs=67.0
Q ss_pred hhhhhhcCCCcchhhHhHHhhccCceEEEEcCC--CCCChHHHHHHcCCCCccEEEcCC-CCeeeecHHHHHHHHHHHhC
Q 019711 260 LEVWAYEGSPFCKVVREVLVELELPHLQRSCAR--GSPKRQILIEKAKHFQVPYLEDPN-TGVQMFESADIVEYLRATYA 336 (337)
Q Consensus 260 L~l~~l~~sPf~~gvr~tLADl~L~~~l~~v~~--g~pk~~e~~~~~p~~qVP~L~d~~-~g~~l~ES~~I~~YL~~~y~ 336 (337)
+++|+... |+|+++++.|.+++++|+...++. +..+.++|.+.+|.++||+|++++ +|..|+||.+|++||+++|+
T Consensus 2 ~~Ly~~~~-~~~~~v~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~g~~l~eS~aI~~yL~~~~~ 80 (81)
T cd03048 2 ITLYTHGT-PNGFKVSIMLEELGLPYEIHPVDISKGEQKKPEFLKINPNGRIPAIVDHNGTPLTVFESGAILLYLAEKYD 80 (81)
T ss_pred eEEEeCCC-CChHHHHHHHHHcCCCcEEEEecCcCCcccCHHHHHhCcCCCCCEEEeCCCCceEEEcHHHHHHHHHHHhC
Confidence 56787765 999999999999999999988874 346778899999999999999853 38899999999999999997
Q ss_pred C
Q 019711 337 Q 337 (337)
Q Consensus 337 ~ 337 (337)
.
T Consensus 81 ~ 81 (81)
T cd03048 81 K 81 (81)
T ss_pred C
Confidence 4
No 55
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=99.33 E-value=3e-12 Score=97.65 Aligned_cols=73 Identities=30% Similarity=0.472 Sum_probs=66.4
Q ss_pred hhhhcCCCcchhhHhHHhhccCceEEEEcCCCCCChHHHHHHcCCCCccEEEcCCCCeeeecHHHHHHHHHHHhCC
Q 019711 262 VWAYEGSPFCKVVREVLVELELPHLQRSCARGSPKRQILIEKAKHFQVPYLEDPNTGVQMFESADIVEYLRATYAQ 337 (337)
Q Consensus 262 l~~l~~sPf~~gvr~tLADl~L~~~l~~v~~g~pk~~e~~~~~p~~qVP~L~d~~~g~~l~ES~~I~~YL~~~y~~ 337 (337)
||++..||||+++++.|.+++++|+...+..+. +..++.+.+|.++||+|++ +|..++||.+|++||+++|++
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~~~i~~~~~~v~~~~-~~~~~~~~~p~~~vPvL~~--~g~~l~dS~~I~~yL~~~~~~ 73 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEEKGIPYELVPVDPEE-KRPEFLKLNPKGKVPVLVD--DGEVLTDSAAIIEYLEERYPG 73 (75)
T ss_dssp EEEETTSHHHHHHHHHHHHHTEEEEEEEEBTTS-TSHHHHHHSTTSBSSEEEE--TTEEEESHHHHHHHHHHHSTS
T ss_pred CCCcCCChHHHHHHHHHHHcCCeEEEeccCccc-chhHHHhhcccccceEEEE--CCEEEeCHHHHHHHHHHHcCC
Confidence 467788999999999999999999999998664 5888999999999999997 488999999999999999974
No 56
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=99.30 E-value=9.6e-12 Score=96.14 Aligned_cols=74 Identities=19% Similarity=0.347 Sum_probs=65.1
Q ss_pred CCCceEEeecCCCcCHHHHHHHHHHcCCCeeEEEcCCCCCCChhHHHhhCCCCCcCeEEcCCCCeeEecchhHHHHHh
Q 019711 137 PEKPIEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLV 214 (337)
Q Consensus 137 ~~~~l~LY~~~~cP~c~kVr~~L~elgl~ye~~~v~~~~~~~~~e~~~~np~~kVP~Lvd~~~g~~l~ES~aIi~YL~ 214 (337)
..+.++||..++||+|++++.+|+++|++|+.++|+.. ....++.+.++..+||+++. +|..|.++++|.+||+
T Consensus 6 ~~~~V~ly~~~~Cp~C~~ak~~L~~~gi~y~~idi~~~--~~~~~~~~~~g~~~vP~i~i--~g~~igG~~~l~~~l~ 79 (79)
T TIGR02190 6 KPESVVVFTKPGCPFCAKAKATLKEKGYDFEEIPLGND--ARGRSLRAVTGATTVPQVFI--GGKLIGGSDELEAYLA 79 (79)
T ss_pred CCCCEEEEECCCCHhHHHHHHHHHHcCCCcEEEECCCC--hHHHHHHHHHCCCCcCeEEE--CCEEEcCHHHHHHHhC
Confidence 35679999999999999999999999999999998533 23457888899999999988 8899999999999985
No 57
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=99.28 E-value=1e-11 Score=93.37 Aligned_cols=73 Identities=23% Similarity=0.261 Sum_probs=65.2
Q ss_pred hhhhhhcCCCcchhhHhHHhhccCceEEEEcCCCCCChHHHHHHcCCCCccEEEcCCCCeeeecHHHHHHHHHHHh
Q 019711 260 LEVWAYEGSPFCKVVREVLVELELPHLQRSCARGSPKRQILIEKAKHFQVPYLEDPNTGVQMFESADIVEYLRATY 335 (337)
Q Consensus 260 L~l~~l~~sPf~~gvr~tLADl~L~~~l~~v~~g~pk~~e~~~~~p~~qVP~L~d~~~g~~l~ES~~I~~YL~~~y 335 (337)
+++|+...||||.+++..|++++++|+.+.++.. .+.++|.+.+|.++||+|++ +|..++||.+|++||+++|
T Consensus 1 ~~ly~~~~~~~~~~v~~~l~~~gi~~~~~~v~~~-~~~~~~~~~~p~~~vP~l~~--~~~~l~es~aI~~yL~~~~ 73 (73)
T cd03059 1 MTLYSGPDDVYSHRVRIVLAEKGVSVEIIDVDPD-NPPEDLAELNPYGTVPTLVD--RDLVLYESRIIMEYLDERF 73 (73)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCccEEEEcCCC-CCCHHHHhhCCCCCCCEEEE--CCEEEEcHHHHHHHHHhhC
Confidence 4578888999999999999999999999988754 46678999999999999998 4689999999999999986
No 58
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=99.28 E-value=8.8e-12 Score=94.04 Aligned_cols=72 Identities=25% Similarity=0.394 Sum_probs=64.0
Q ss_pred hhhhhhcCCCcchhhHhHHhhccCceEEEEcCC--CCCChHHHHHHcCCCCccEEEcCCCCeeeecHHHHHHHHHH
Q 019711 260 LEVWAYEGSPFCKVVREVLVELELPHLQRSCAR--GSPKRQILIEKAKHFQVPYLEDPNTGVQMFESADIVEYLRA 333 (337)
Q Consensus 260 L~l~~l~~sPf~~gvr~tLADl~L~~~l~~v~~--g~pk~~e~~~~~p~~qVP~L~d~~~g~~l~ES~~I~~YL~~ 333 (337)
+++|+...||+|+++++.|++++++|+.+.++. +..+.++|.+.||.++||+|++ +|..++||.+|++||++
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~--~~~~l~es~aI~~yL~~ 74 (74)
T cd03045 1 IDLYYLPGSPPCRAVLLTAKALGLELNLKEVNLMKGEHLKPEFLKLNPQHTVPTLVD--NGFVLWESHAILIYLVE 74 (74)
T ss_pred CEEEeCCCCCcHHHHHHHHHHcCCCCEEEEecCccCCcCCHHHHhhCcCCCCCEEEE--CCEEEEcHHHHHHHHhC
Confidence 467888899999999999999999999998874 4456789999999999999998 47899999999999974
No 59
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=99.26 E-value=1.2e-11 Score=94.32 Aligned_cols=71 Identities=18% Similarity=0.227 Sum_probs=62.8
Q ss_pred hhhhhhcCCCcchhhHhHHhhccCceEEEEcCC--CCCChHHHHHHcCCCCccEEEcCCCCeeeecHHHHHHHHH
Q 019711 260 LEVWAYEGSPFCKVVREVLVELELPHLQRSCAR--GSPKRQILIEKAKHFQVPYLEDPNTGVQMFESADIVEYLR 332 (337)
Q Consensus 260 L~l~~l~~sPf~~gvr~tLADl~L~~~l~~v~~--g~pk~~e~~~~~p~~qVP~L~d~~~g~~l~ES~~I~~YL~ 332 (337)
+++|+...|++|+++++.|.+++++|++..++. ++.+.++|.++||.++||+|++ +|..++||.+|++||+
T Consensus 1 ~~ly~~~~s~~s~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~inP~g~vP~L~~--~g~~l~Es~aI~~yLe 73 (73)
T cd03052 1 LVLYHWTQSFSSQKVRLVIAEKGLRCEEYDVSLPLSEHNEPWFMRLNPTGEVPVLIH--GDNIICDPTQIIDYLE 73 (73)
T ss_pred CEEecCCCCccHHHHHHHHHHcCCCCEEEEecCCcCccCCHHHHHhCcCCCCCEEEE--CCEEEEcHHHHHHHhC
Confidence 357888889999999999999999999988764 3456778999999999999998 5889999999999985
No 60
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=99.23 E-value=2.3e-11 Score=92.20 Aligned_cols=73 Identities=26% Similarity=0.325 Sum_probs=64.1
Q ss_pred hhhhhhcCCCcchhhHhHHhhccCceEEEEcCCCCCChHHHHHHcCC-CCccEEEcCCCCeeeecHHHHHHHHHHHh
Q 019711 260 LEVWAYEGSPFCKVVREVLVELELPHLQRSCARGSPKRQILIEKAKH-FQVPYLEDPNTGVQMFESADIVEYLRATY 335 (337)
Q Consensus 260 L~l~~l~~sPf~~gvr~tLADl~L~~~l~~v~~g~pk~~e~~~~~p~-~qVP~L~d~~~g~~l~ES~~I~~YL~~~y 335 (337)
+++|++..||||.++++.|++.+++|+...++.. .+..+|.+.+|. ++||+|++ +|..++||.+|++||+++|
T Consensus 1 ~~Ly~~~~sp~~~~v~~~l~~~gl~~~~~~~~~~-~~~~~~~~~~p~~~~vP~l~~--~~~~l~eS~aI~~yL~~~~ 74 (74)
T cd03058 1 VKLLGAWASPFVLRVRIALALKGVPYEYVEEDLG-NKSELLLASNPVHKKIPVLLH--NGKPICESLIIVEYIDEAW 74 (74)
T ss_pred CEEEECCCCchHHHHHHHHHHcCCCCEEEEeCcc-cCCHHHHHhCCCCCCCCEEEE--CCEEeehHHHHHHHHHhhC
Confidence 4578888899999999999999999999887654 466788899995 99999998 4789999999999999875
No 61
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=99.22 E-value=3.8e-11 Score=95.74 Aligned_cols=69 Identities=23% Similarity=0.237 Sum_probs=62.1
Q ss_pred hcCCCcchhhHhHHhhccCceEEEEcCCCCCChHHHHHHcCCCCccEEEcCCCCeeeecHHHHHHHHHHHhC
Q 019711 265 YEGSPFCKVVREVLVELELPHLQRSCARGSPKRQILIEKAKHFQVPYLEDPNTGVQMFESADIVEYLRATYA 336 (337)
Q Consensus 265 l~~sPf~~gvr~tLADl~L~~~l~~v~~g~pk~~e~~~~~p~~qVP~L~d~~~g~~l~ES~~I~~YL~~~y~ 336 (337)
...||||++++++|++++++|++..++... +-++|+++||.++||+|+| +|..++||.+|++||+++|.
T Consensus 19 ~g~cpf~~rvrl~L~eKgi~ye~~~vd~~~-~p~~~~~~nP~g~vPvL~~--~~~~i~eS~~I~eYLde~~~ 87 (91)
T cd03061 19 IGNCPFCQRLFMVLWLKGVVFNVTTVDMKR-KPEDLKDLAPGTQPPFLLY--NGEVKTDNNKIEEFLEETLC 87 (91)
T ss_pred CCCChhHHHHHHHHHHCCCceEEEEeCCCC-CCHHHHHhCCCCCCCEEEE--CCEEecCHHHHHHHHHHHcc
Confidence 356999999999999999999999998664 4477899999999999999 58899999999999999986
No 62
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=99.21 E-value=6.2e-11 Score=89.58 Aligned_cols=71 Identities=17% Similarity=0.358 Sum_probs=62.6
Q ss_pred ceEEeecCCCcCHHHHHHHHHHcCCCeeEEEcCCCCCCChhHHHhhCCCCCcCeEEcCCCCeeEecchhHHHHHh
Q 019711 140 PIEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLV 214 (337)
Q Consensus 140 ~l~LY~~~~cP~c~kVr~~L~elgl~ye~~~v~~~~~~~~~e~~~~np~~kVP~Lvd~~~g~~l~ES~aIi~YL~ 214 (337)
+++||..++||+|.+++.+|+++|++|+.++++... ...++.+.++..+||+++. +|..+.++.+|.+||+
T Consensus 2 ~v~lys~~~Cp~C~~ak~~L~~~~i~~~~~~v~~~~--~~~~~~~~~g~~~vP~ifi--~g~~igg~~~l~~~l~ 72 (72)
T cd03029 2 SVSLFTKPGCPFCARAKAALQENGISYEEIPLGKDI--TGRSLRAVTGAMTVPQVFI--DGELIGGSDDLEKYFA 72 (72)
T ss_pred eEEEEECCCCHHHHHHHHHHHHcCCCcEEEECCCCh--hHHHHHHHhCCCCcCeEEE--CCEEEeCHHHHHHHhC
Confidence 589999999999999999999999999999985433 3456778889999999987 8899999999999985
No 63
>PRK10638 glutaredoxin 3; Provisional
Probab=99.20 E-value=5.3e-11 Score=92.68 Aligned_cols=74 Identities=16% Similarity=0.390 Sum_probs=64.0
Q ss_pred CCceEEeecCCCcCHHHHHHHHHHcCCCeeEEEcCCCCCCChhHHHhhCCCCCcCeEEcCCCCeeEecchhHHHHHh
Q 019711 138 EKPIEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLV 214 (337)
Q Consensus 138 ~~~l~LY~~~~cP~c~kVr~~L~elgl~ye~~~v~~~~~~~~~e~~~~np~~kVP~Lvd~~~g~~l~ES~aIi~YL~ 214 (337)
|..++||..++||+|++++.+|+++|++|+.++|+... ..++++.+.+|..+||+++. +|..+...+++..+-.
T Consensus 1 m~~v~ly~~~~Cp~C~~a~~~L~~~gi~y~~~dv~~~~-~~~~~l~~~~g~~~vP~i~~--~g~~igG~~~~~~~~~ 74 (83)
T PRK10638 1 MANVEIYTKATCPFCHRAKALLNSKGVSFQEIPIDGDA-AKREEMIKRSGRTTVPQIFI--DAQHIGGCDDLYALDA 74 (83)
T ss_pred CCcEEEEECCCChhHHHHHHHHHHcCCCcEEEECCCCH-HHHHHHHHHhCCCCcCEEEE--CCEEEeCHHHHHHHHH
Confidence 34699999999999999999999999999999996432 34678999999999999987 7899999988887654
No 64
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=99.19 E-value=5.1e-11 Score=90.75 Aligned_cols=74 Identities=18% Similarity=0.142 Sum_probs=64.5
Q ss_pred hhhhhhcCCCcchhhHhHHhhccCceEEEEcCCC--CCChHHHHHHcCCCCccEEEcCCCCeeeecHHHHHHHHHHHh
Q 019711 260 LEVWAYEGSPFCKVVREVLVELELPHLQRSCARG--SPKRQILIEKAKHFQVPYLEDPNTGVQMFESADIVEYLRATY 335 (337)
Q Consensus 260 L~l~~l~~sPf~~gvr~tLADl~L~~~l~~v~~g--~pk~~e~~~~~p~~qVP~L~d~~~g~~l~ES~~I~~YL~~~y 335 (337)
+++|+...+++|+.++++|++++++|+...++.. +...+++.+.||.++||+|++ +|..++||.+|++||+++|
T Consensus 1 ~~ly~~~~s~~~~~v~~~l~~~g~~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~--~~~~l~eS~aI~~Yl~~~~ 76 (76)
T cd03050 1 LKLYYDLMSQPSRAVYIFLKLNKIPFEECPIDLRKGEQLTPEFKKINPFGKVPAIVD--GDFTLAESVAILRYLARKF 76 (76)
T ss_pred CEEeeCCCChhHHHHHHHHHHcCCCcEEEEecCCCCCcCCHHHHHhCcCCCCCEEEE--CCEEEEcHHHHHHHHHhhC
Confidence 3577788899999999999999999999888753 345678899999999999998 5788999999999999986
No 65
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=99.19 E-value=4.1e-11 Score=108.64 Aligned_cols=75 Identities=24% Similarity=0.297 Sum_probs=69.0
Q ss_pred chhhhhhcCCCcchhhHhHHhhccCceEEEEcCCCCCChHHHHHHcCCCCccEEEcCCCCeeeecHHHHHHHHHHHhC
Q 019711 259 PLEVWAYEGSPFCKVVREVLVELELPHLQRSCARGSPKRQILIEKAKHFQVPYLEDPNTGVQMFESADIVEYLRATYA 336 (337)
Q Consensus 259 ~L~l~~l~~sPf~~gvr~tLADl~L~~~l~~v~~g~pk~~e~~~~~p~~qVP~L~d~~~g~~l~ES~~I~~YL~~~y~ 336 (337)
.+++|++..|+||.++++.|.+++++|+++.++.. .+.++|+++||.++||+|+| +|..++||.+|++||+++|+
T Consensus 10 ~~~Ly~~~~s~~~~rv~~~L~e~gl~~e~~~v~~~-~~~~~~~~~nP~g~VPvL~~--~g~~l~ES~AIl~YL~~~~~ 84 (211)
T PRK09481 10 VMTLFSGPTDIYSHQVRIVLAEKGVSVEIEQVEKD-NLPQDLIDLNPYQSVPTLVD--RELTLYESRIIMEYLDERFP 84 (211)
T ss_pred eeEEeCCCCChhHHHHHHHHHHCCCCCEEEeCCcc-cCCHHHHHhCCCCCCCEEEE--CCEEeeCHHHHHHHHHHhCC
Confidence 57899988999999999999999999999999864 45678999999999999998 68899999999999999986
No 66
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=99.15 E-value=8e-11 Score=89.35 Aligned_cols=73 Identities=23% Similarity=0.236 Sum_probs=63.8
Q ss_pred hhhhhhcCCCcchhhHhHHhhccCceEEEEcCCC--CCChHHHHHHcCCCCccEEEcCCCCeeeecHHHHHHHHHHH
Q 019711 260 LEVWAYEGSPFCKVVREVLVELELPHLQRSCARG--SPKRQILIEKAKHFQVPYLEDPNTGVQMFESADIVEYLRAT 334 (337)
Q Consensus 260 L~l~~l~~sPf~~gvr~tLADl~L~~~l~~v~~g--~pk~~e~~~~~p~~qVP~L~d~~~g~~l~ES~~I~~YL~~~ 334 (337)
+++|+...||||+++++.|++++++|+...++.. +.+.++|.+.||.++||+|++ +|..++||.+|++||+++
T Consensus 2 ~~Ly~~~~s~~s~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~P~~~vP~l~~--~g~~l~es~aI~~yL~~~ 76 (76)
T cd03053 2 LKLYGAAMSTCVRRVLLCLEEKGVDYELVPVDLTKGEHKSPEHLARNPFGQIPALED--GDLKLFESRAITRYLAEK 76 (76)
T ss_pred eEEEeCCCChhHHHHHHHHHHcCCCcEEEEeCccccccCCHHHHhhCCCCCCCEEEE--CCEEEEcHHHHHHHHhhC
Confidence 5678888999999999999999999999887753 345678899999999999998 478999999999999863
No 67
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=99.15 E-value=8.7e-11 Score=88.44 Aligned_cols=69 Identities=19% Similarity=0.248 Sum_probs=61.0
Q ss_pred hhhhhcCCCcchhhHhHHhhccCceEEEEcCCCCCChHHHHHHcCCCCccEEEcCCCCeeeecHHHHHHHH
Q 019711 261 EVWAYEGSPFCKVVREVLVELELPHLQRSCARGSPKRQILIEKAKHFQVPYLEDPNTGVQMFESADIVEYL 331 (337)
Q Consensus 261 ~l~~l~~sPf~~gvr~tLADl~L~~~l~~v~~g~pk~~e~~~~~p~~qVP~L~d~~~g~~l~ES~~I~~YL 331 (337)
.+|++..||||+++++.|++++++|+...++... +.++|.+.||.++||+|+++ +|..++||.+|++|+
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~gl~~e~~~v~~~~-~~~~~~~~np~~~vP~L~~~-~g~~l~eS~aI~~y~ 70 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLAGITVELREVELKN-KPAEMLAASPKGTVPVLVLG-NGTVIEESLDIMRWA 70 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHcCCCcEEEEeCCCC-CCHHHHHHCCCCCCCEEEEC-CCcEEecHHHHHHhh
Confidence 4677888999999999999999999999988653 45789999999999999985 388899999999996
No 68
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=99.15 E-value=7.6e-11 Score=88.58 Aligned_cols=71 Identities=30% Similarity=0.408 Sum_probs=60.5
Q ss_pred hhhhhhcCCCcchhhHhHHhhccCceEEEEcCCCCCChHHHHHHcCCCCccEEEcCCCCeeeecHHHHHHHHHH
Q 019711 260 LEVWAYEGSPFCKVVREVLVELELPHLQRSCARGSPKRQILIEKAKHFQVPYLEDPNTGVQMFESADIVEYLRA 333 (337)
Q Consensus 260 L~l~~l~~sPf~~gvr~tLADl~L~~~l~~v~~g~pk~~e~~~~~p~~qVP~L~d~~~g~~l~ES~~I~~YL~~ 333 (337)
+++|++..||||.++++.|++++++|+.+.++.+. .....+.+|.++||+|+++ +|..++||.+|++||++
T Consensus 1 ~~Ly~~~~~p~~~rvr~~L~~~gl~~~~~~~~~~~--~~~~~~~~~~~~vP~L~~~-~~~~l~es~aI~~yL~~ 71 (71)
T cd03037 1 MKLYIYEHCPFCVKARMIAGLKNIPVEQIILQNDD--EATPIRMIGAKQVPILEKD-DGSFMAESLDIVAFIDE 71 (71)
T ss_pred CceEecCCCcHhHHHHHHHHHcCCCeEEEECCCCc--hHHHHHhcCCCccCEEEeC-CCeEeehHHHHHHHHhC
Confidence 45788889999999999999999999998887543 2345678999999999984 37899999999999975
No 69
>PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B ....
Probab=99.15 E-value=6.5e-11 Score=89.36 Aligned_cols=67 Identities=34% Similarity=0.438 Sum_probs=56.5
Q ss_pred CCCcchhhHhHHhhccCceEEEEcC---CCCCChHHHHHHcCCCCccEEEcCCCCeeeecHHHHHHHHHHH
Q 019711 267 GSPFCKVVREVLVELELPHLQRSCA---RGSPKRQILIEKAKHFQVPYLEDPNTGVQMFESADIVEYLRAT 334 (337)
Q Consensus 267 ~sPf~~gvr~tLADl~L~~~l~~v~---~g~pk~~e~~~~~p~~qVP~L~d~~~g~~l~ES~~I~~YL~~~ 334 (337)
.|||+.++++.|++++|++++..+. .+..+.++|.+.+|.++||+|+|+ +|..++||.+|++||+++
T Consensus 1 ~sP~a~Rv~i~l~~~gl~~~~~~v~~~~~~~~~~~~~~~~~p~~~VP~L~~~-~g~vi~eS~~I~~yL~~~ 70 (70)
T PF13409_consen 1 FSPFAHRVRIALEEKGLPYEIKVVPLIPKGEQKPPEFLALNPRGKVPVLVDP-DGTVINESLAILEYLEEQ 70 (70)
T ss_dssp T-HHHHHHHHHHHHHTGTCEEEEEETTTTBCTTCHBHHHHSTT-SSSEEEET-TTEEEESHHHHHHHHHHT
T ss_pred CchHhHHHHHHHHHhCCCCEEEEEeeecCccccChhhhccCcCeEEEEEEEC-CCCEeeCHHHHHHHHhcC
Confidence 4899999999999999999988773 233455789999999999999987 578999999999999975
No 70
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=99.14 E-value=8.4e-11 Score=88.05 Aligned_cols=72 Identities=22% Similarity=0.254 Sum_probs=62.4
Q ss_pred hhhhhhcCCCcchhhHhHHhhccCceEEEEcCCC--CCChHHHHHHcCCCCccEEEcCCCCeeeecHHHHHHHHH
Q 019711 260 LEVWAYEGSPFCKVVREVLVELELPHLQRSCARG--SPKRQILIEKAKHFQVPYLEDPNTGVQMFESADIVEYLR 332 (337)
Q Consensus 260 L~l~~l~~sPf~~gvr~tLADl~L~~~l~~v~~g--~pk~~e~~~~~p~~qVP~L~d~~~g~~l~ES~~I~~YL~ 332 (337)
+++|+...||||+++++.|.+++++|+...++.. ..+.++|.+.+|.++||+|+++ +|..++||.+|++||+
T Consensus 1 ~~Ly~~~~s~~~~~~~~~L~~~~l~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~-~~~~l~es~aI~~yLe 74 (74)
T cd03051 1 MKLYDSPTAPNPRRVRIFLAEKGIDVPLVTVDLAAGEQRSPEFLAKNPAGTVPVLELD-DGTVITESVAICRYLE 74 (74)
T ss_pred CEEEeCCCCcchHHHHHHHHHcCCCceEEEeecccCccCCHHHHhhCCCCCCCEEEeC-CCCEEecHHHHHHHhC
Confidence 3678888999999999999999999999888743 3466789999999999999864 4778999999999985
No 71
>cd03047 GST_N_2 GST_N family, unknown subfamily 2; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The sequence from Burkholderia cepacia was identified as part of a gene cluster involved in the degradation of 2,4,5-trichlorophenoxyacetic acid. Some GSTs (e.g. Class Zeta and Delta) are known to catalyze dechlorination reactions.
Probab=99.14 E-value=9.4e-11 Score=88.66 Aligned_cols=70 Identities=27% Similarity=0.367 Sum_probs=61.8
Q ss_pred hhhhhcCCCcchhhHhHHhhccCceEEEEcCC--CCCChHHHHHHcCCCCccEEEcCCCCeeeecHHHHHHHHH
Q 019711 261 EVWAYEGSPFCKVVREVLVELELPHLQRSCAR--GSPKRQILIEKAKHFQVPYLEDPNTGVQMFESADIVEYLR 332 (337)
Q Consensus 261 ~l~~l~~sPf~~gvr~tLADl~L~~~l~~v~~--g~pk~~e~~~~~p~~qVP~L~d~~~g~~l~ES~~I~~YL~ 332 (337)
++|+...+++++++++.|++++++|+.+.++. ++.+.++|.+.||.++||+|+| +|..++||.+|++||+
T Consensus 2 ~l~~~~~s~~~~~v~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~nP~~~vP~L~~--~~~~l~eS~aI~~YL~ 73 (73)
T cd03047 2 TIWGRRSSINVQKVLWLLDELGLPYERIDAGGQFGGLDTPEFLAMNPNGRVPVLED--GDFVLWESNAILRYLA 73 (73)
T ss_pred EEEecCCCcchHHHHHHHHHcCCCCEEEEeccccccccCHHHHhhCCCCCCCEEEE--CCEEEECHHHHHHHhC
Confidence 57778889999999999999999999988763 3456788999999999999998 5789999999999984
No 72
>COG0625 Gst Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=1e-10 Score=105.82 Aligned_cols=76 Identities=28% Similarity=0.336 Sum_probs=67.5
Q ss_pred hhhhhcCCCcchhhHhHHhhccCceEEEEcCCCC-CChHHHHHHcCCCCccEEEcCCCCeeeecHHHHHHHHHHHhCC
Q 019711 261 EVWAYEGSPFCKVVREVLVELELPHLQRSCARGS-PKRQILIEKAKHFQVPYLEDPNTGVQMFESADIVEYLRATYAQ 337 (337)
Q Consensus 261 ~l~~l~~sPf~~gvr~tLADl~L~~~l~~v~~g~-pk~~e~~~~~p~~qVP~L~d~~~g~~l~ES~~I~~YL~~~y~~ 337 (337)
++|+...+|||.++++.+.+++++|+.+.++... .+.++|.++||.++||+|++++ |..++||.+|++||+++|+.
T Consensus 2 ~L~~~~~sp~~~kv~l~l~e~g~~ye~~~v~~~~~~~~~~~~~~nP~gkVPvL~~~~-~~~l~ES~AI~~YL~~~~~~ 78 (211)
T COG0625 2 KLYGSPTSPYSRKVRLALEEKGLPYEIVLVDLDAEQKPPDFLALNPLGKVPALVDDD-GEVLTESGAILEYLAERYPG 78 (211)
T ss_pred eeecCCCCcchHHHHHHHHHcCCCceEEEeCcccccCCHHHHhcCCCCCCCEEeeCC-CCeeecHHHHHHHHHhhCCC
Confidence 5676677899999999999999999999998774 7788999999999999999964 33899999999999999973
No 73
>PRK15113 glutathione S-transferase; Provisional
Probab=99.13 E-value=9.7e-11 Score=106.44 Aligned_cols=77 Identities=22% Similarity=0.298 Sum_probs=68.1
Q ss_pred Cchhhhhhc--CCCcchhhHhHHhhccCceEEEEcCC--CCCChHHHHHHcCCCCccEEEcCCCCeeeecHHHHHHHHHH
Q 019711 258 KPLEVWAYE--GSPFCKVVREVLVELELPHLQRSCAR--GSPKRQILIEKAKHFQVPYLEDPNTGVQMFESADIVEYLRA 333 (337)
Q Consensus 258 k~L~l~~l~--~sPf~~gvr~tLADl~L~~~l~~v~~--g~pk~~e~~~~~p~~qVP~L~d~~~g~~l~ES~~I~~YL~~ 333 (337)
..+++|+.. .|+||.++++.|.+++++|+.+.++. ++++.++|.++||.++||+|+| +|..|+||.+|++||++
T Consensus 4 ~~~~Ly~~~~~~s~~~~rv~~~l~e~gi~~e~~~v~~~~~~~~~~~~~~~nP~g~VP~L~~--~~~~l~ES~aI~~YL~~ 81 (214)
T PRK15113 4 PAITLYSDAHFFSPYVMSAFVALQEKGLPFELKTVDLDAGEHLQPTYQGYSLTRRVPTLQH--DDFELSESSAIAEYLEE 81 (214)
T ss_pred CeEEEEeCCCCCCchHHHHHHHHHHcCCCCeEEEeCCCCccccCHHHHhcCCCCCCCEEEE--CCEEEecHHHHHHHHHH
Confidence 456788654 69999999999999999999998875 4457789999999999999998 57899999999999999
Q ss_pred HhC
Q 019711 334 TYA 336 (337)
Q Consensus 334 ~y~ 336 (337)
+|+
T Consensus 82 ~~~ 84 (214)
T PRK15113 82 RFA 84 (214)
T ss_pred HcC
Confidence 986
No 74
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.13 E-value=1.5e-10 Score=86.74 Aligned_cols=71 Identities=25% Similarity=0.325 Sum_probs=62.7
Q ss_pred hhhhhhcCCCcchhhHhHHhhccCceEEEEcCC--CCCChHHHHHHcCCCCccEEEcCCCCeeeecHHHHHHHHH
Q 019711 260 LEVWAYEGSPFCKVVREVLVELELPHLQRSCAR--GSPKRQILIEKAKHFQVPYLEDPNTGVQMFESADIVEYLR 332 (337)
Q Consensus 260 L~l~~l~~sPf~~gvr~tLADl~L~~~l~~v~~--g~pk~~e~~~~~p~~qVP~L~d~~~g~~l~ES~~I~~YL~ 332 (337)
+++|++..||+|..+++.|.+++++|+.+.++. +..+.++|.+.+|.+++|+|++ +|..++||.+|++||.
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~--~~~~i~es~aI~~yl~ 73 (73)
T cd03056 1 MKLYGFPLSGNCYKVRLLLALLGIPYEWVEVDILKGETRTPEFLALNPNGEVPVLEL--DGRVLAESNAILVYLA 73 (73)
T ss_pred CEEEeCCCCccHHHHHHHHHHcCCCcEEEEecCCCcccCCHHHHHhCCCCCCCEEEE--CCEEEEcHHHHHHHhC
Confidence 357888899999999999999999999998874 3456788999999999999998 4789999999999984
No 75
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=99.11 E-value=1.7e-10 Score=87.88 Aligned_cols=74 Identities=24% Similarity=0.359 Sum_probs=62.0
Q ss_pred hhhhhhcCCCcchhhHhHHhhccCceEEEEcCCCCCChHHHHHHcCCCCccEEEcCC--CCeeeecHHHHHHHHHHHhC
Q 019711 260 LEVWAYEGSPFCKVVREVLVELELPHLQRSCARGSPKRQILIEKAKHFQVPYLEDPN--TGVQMFESADIVEYLRATYA 336 (337)
Q Consensus 260 L~l~~l~~sPf~~gvr~tLADl~L~~~l~~v~~g~pk~~e~~~~~p~~qVP~L~d~~--~g~~l~ES~~I~~YL~~~y~ 336 (337)
+++|.+..||||.+++..|.+++++|+..+++.. ...+ ++.+|.++||+|++++ +|..++||.+|++||+++.+
T Consensus 2 i~Ly~~~~~p~c~kv~~~L~~~gi~y~~~~~~~~--~~~~-~~~~~~~~vP~l~~~~~~~~~~l~eS~~I~~yL~~~~~ 77 (77)
T cd03040 2 ITLYQYKTCPFCCKVRAFLDYHGIPYEVVEVNPV--SRKE-IKWSSYKKVPILRVESGGDGQQLVDSSVIISTLKTYLG 77 (77)
T ss_pred EEEEEcCCCHHHHHHHHHHHHCCCceEEEECCch--hHHH-HHHhCCCccCEEEECCCCCccEEEcHHHHHHHHHHHcC
Confidence 5678888999999999999999999999988542 2334 4679999999999753 47899999999999998753
No 76
>cd03046 GST_N_GTT1_like GST_N family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endoplasmic reticulum. Its expression is induced after diauxic shift and remains high throughout the stationary phase. S. pomb
Probab=99.11 E-value=2.3e-10 Score=86.62 Aligned_cols=73 Identities=25% Similarity=0.242 Sum_probs=62.8
Q ss_pred hhhhhcCCCcchhhHhHHhhccCceEEEEcCCC--CCChHHHHHHcCCCCccEEEcCCCCeeeecHHHHHHHHHHHhC
Q 019711 261 EVWAYEGSPFCKVVREVLVELELPHLQRSCARG--SPKRQILIEKAKHFQVPYLEDPNTGVQMFESADIVEYLRATYA 336 (337)
Q Consensus 261 ~l~~l~~sPf~~gvr~tLADl~L~~~l~~v~~g--~pk~~e~~~~~p~~qVP~L~d~~~g~~l~ES~~I~~YL~~~y~ 336 (337)
++|+... +++.++++.|.+.+++|+...++.. ..+..+|.+.+|.++||+|++ +|..++||.+|++||+++|+
T Consensus 2 ~l~~~~~-~~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~--~g~~l~es~aI~~yL~~~~~ 76 (76)
T cd03046 2 TLYHLPR-SRSFRILWLLEELGLPYELVLYDRGPGEQAPPEYLAINPLGKVPVLVD--GDLVLTESAAIILYLAEKYG 76 (76)
T ss_pred EEEeCCC-CChHHHHHHHHHcCCCcEEEEeCCCCCccCCHHHHhcCCCCCCCEEEE--CCEEEEcHHHHHHHHHHhCc
Confidence 4565543 6899999999999999999888753 457888999999999999998 57899999999999999985
No 77
>COG2999 GrxB Glutaredoxin 2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=8.7e-11 Score=103.11 Aligned_cols=77 Identities=29% Similarity=0.544 Sum_probs=64.7
Q ss_pred eEEeecCCCcCHHHHHHHHHHcCCCeeEEEcCCCCCCChhHHHhhCCCCCcCeEEcCCCCeeEecchhHHHHHhhccCCC
Q 019711 141 IEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLVGKYGDG 220 (337)
Q Consensus 141 l~LY~~~~cP~c~kVr~~L~elgl~ye~~~v~~~~~~~~~e~~~~np~~kVP~Lvd~~~g~~l~ES~aIi~YL~~~y~~~ 220 (337)
|+||-|+.||||.|+|++.-.+||+++.....-.+++ ++ ..+-|..+||+|+- +||..|.||.+|++|+.+.+|+.
T Consensus 1 MkLYIYdHCPfcvrarmi~Gl~nipve~~vL~nDDe~-Tp--~rmiG~KqVPiL~K-edg~~m~ESlDIV~y~d~~~~~~ 76 (215)
T COG2999 1 MKLYIYDHCPFCVRARMIFGLKNIPVELHVLLNDDEE-TP--IRMIGQKQVPILQK-EDGRAMPESLDIVHYVDELDGKP 76 (215)
T ss_pred CceeEeccChHHHHHHHHhhccCCChhhheeccCccc-Ch--hhhhcccccceEEc-cccccchhhhHHHHHHHHhcCch
Confidence 5799999999999999999999999998776433332 22 46778999999973 48999999999999999999976
Q ss_pred C
Q 019711 221 S 221 (337)
Q Consensus 221 ~ 221 (337)
+
T Consensus 77 ~ 77 (215)
T COG2999 77 L 77 (215)
T ss_pred h
Confidence 3
No 78
>cd03079 GST_N_Metaxin2 GST_N family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=99.10 E-value=2.6e-10 Score=87.52 Aligned_cols=64 Identities=14% Similarity=0.174 Sum_probs=51.9
Q ss_pred eEEeecCCCcCHHHHHHHHHHcCCCeeEEEcCCCCCCChhHHHhhCCCCCcCeEEcCCCCeeEecchhHHHHHhhc
Q 019711 141 IEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLVGK 216 (337)
Q Consensus 141 l~LY~~~~cP~c~kVr~~L~elgl~ye~~~v~~~~~~~~~e~~~~np~~kVP~Lvd~~~g~~l~ES~aIi~YL~~~ 216 (337)
..||. .+++|.|++++|+++|++|+.+... +++ ..+|.||||+|++ ||..|+||.+|+.||+++
T Consensus 11 ~~~~~--~~~~~~kv~~~L~elglpye~~~~~-~~~-------~~~P~GkVP~L~~--dg~vI~eS~aIl~yL~~~ 74 (74)
T cd03079 11 QILLP--DNASCLAVQTFLKMCNLPFNVRCRA-NAE-------FMSPSGKVPFIRV--GNQIVSEFGPIVQFVEAK 74 (74)
T ss_pred eeecC--CCCCHHHHHHHHHHcCCCcEEEecC-Ccc-------ccCCCCcccEEEE--CCEEEeCHHHHHHHHhcC
Confidence 45554 4677999999999999999998541 111 1567799999998 889999999999999875
No 79
>cd03057 GST_N_Beta GST_N family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site forms a covalent bond with GSH.
Probab=99.09 E-value=2.7e-10 Score=86.85 Aligned_cols=74 Identities=24% Similarity=0.202 Sum_probs=62.4
Q ss_pred hhhhhcCCCcchhhHhHHhhccCceEEEEcCCC--CCChHHHHHHcCCCCccEEEcCCCCeeeecHHHHHHHHHHHhC
Q 019711 261 EVWAYEGSPFCKVVREVLVELELPHLQRSCARG--SPKRQILIEKAKHFQVPYLEDPNTGVQMFESADIVEYLRATYA 336 (337)
Q Consensus 261 ~l~~l~~sPf~~gvr~tLADl~L~~~l~~v~~g--~pk~~e~~~~~p~~qVP~L~d~~~g~~l~ES~~I~~YL~~~y~ 336 (337)
++|+...+ ++.++++.|.+++++|+.+.++.. +.+.++|.+.||.++||+|+++ +|..++||.+|++||+++|+
T Consensus 2 ~Ly~~~~~-~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~np~~~vP~l~~~-~g~~l~eS~aI~~yL~~~~p 77 (77)
T cd03057 2 KLYYSPGA-CSLAPHIALEELGLPFELVRVDLRTKTQKGADYLAINPKGQVPALVLD-DGEVLTESAAILQYLADLHP 77 (77)
T ss_pred EEEeCCCC-chHHHHHHHHHcCCCceEEEEecccCccCCHhHHHhCCCCCCCEEEEC-CCcEEEcHHHHHHHHHHhCc
Confidence 46665544 688899999999999998877653 3567899999999999999984 37899999999999999985
No 80
>KOG4420 consensus Uncharacterized conserved protein (Ganglioside-induced differentiation associated protein 1, GDAP1) [Function unknown]
Probab=99.07 E-value=8.1e-11 Score=108.74 Aligned_cols=82 Identities=17% Similarity=0.312 Sum_probs=75.2
Q ss_pred CCCCceEEeecCCCcCHHHHHHHHHHcCCCeeEEEcC-CCCCCChhHHHhhCCCCCcCeEEcCCCCeeEecchhHHHHHh
Q 019711 136 RPEKPIEIYEYESCPFCRKVREIVAVLDLDVLYYPCP-RNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLV 214 (337)
Q Consensus 136 ~~~~~l~LY~~~~cP~c~kVr~~L~elgl~ye~~~v~-~~~~~~~~e~~~~np~~kVP~Lvd~~~g~~l~ES~aIi~YL~ 214 (337)
.+...+.||..+.+-.++|||+++.|+||+|+.++|+ -.|++..++|..+||++.||+|++ +..+|.++..||+|++
T Consensus 22 ~~~e~~vLyhhpysf~sQkVrlvi~EK~id~~~y~V~l~~geh~epwFmrlNp~gevPVl~~--g~~II~d~tqIIdYvE 99 (325)
T KOG4420|consen 22 WPRESLVLYHHPYSFSSQKVRLVIAEKGIDCEEYDVSLPQGEHKEPWFMRLNPGGEVPVLIH--GDNIISDYTQIIDYVE 99 (325)
T ss_pred CchhcceeeecCcccccceeeeehhhcccccceeeccCccccccCchheecCCCCCCceEec--CCeecccHHHHHHHHH
Confidence 3344599999999999999999999999999999996 789999999999999999999998 7779999999999999
Q ss_pred hccCC
Q 019711 215 GKYGD 219 (337)
Q Consensus 215 ~~y~~ 219 (337)
++|-.
T Consensus 100 rtf~g 104 (325)
T KOG4420|consen 100 RTFTG 104 (325)
T ss_pred Hhhcc
Confidence 99854
No 81
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=99.07 E-value=4.3e-10 Score=85.60 Aligned_cols=72 Identities=22% Similarity=0.278 Sum_probs=63.1
Q ss_pred hhhhhcCCCcchhhHhHHhhccCceEEEEcCCCC-CChHHHHHHcCCCCccEEEcCCCCeeeecHHHHHHHHHH
Q 019711 261 EVWAYEGSPFCKVVREVLVELELPHLQRSCARGS-PKRQILIEKAKHFQVPYLEDPNTGVQMFESADIVEYLRA 333 (337)
Q Consensus 261 ~l~~l~~sPf~~gvr~tLADl~L~~~l~~v~~g~-pk~~e~~~~~p~~qVP~L~d~~~g~~l~ES~~I~~YL~~ 333 (337)
++|++..|+++..+++.|++++++|+...++... ++.++|.+.||.++||+|++++ |..++||.+|++||++
T Consensus 2 ~Ly~~~~~~~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~nP~~~vP~L~~~~-g~~l~es~aI~~yL~~ 74 (75)
T cd03044 2 TLYTYPGNPRSLKILAAAKYNGLDVEIVDFQPGKENKTPEFLKKFPLGKVPAFEGAD-GFCLFESNAIAYYVAN 74 (75)
T ss_pred eEecCCCCccHHHHHHHHHHcCCceEEEecccccccCCHHHHHhCCCCCCCEEEcCC-CCEEeeHHHHHHHHhh
Confidence 3677788999999999999999999999888642 5678899999999999999753 7789999999999985
No 82
>cd03076 GST_N_Pi GST_N family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an increase in JNK activity, thereby promoting apoptosis. GSTP1 is expressed in various tumors and is the predominant GST in a w
Probab=99.04 E-value=2e-10 Score=87.18 Aligned_cols=72 Identities=14% Similarity=0.149 Sum_probs=62.1
Q ss_pred hhhhhhcCCCcchhhHhHHhhccCceEEEEcCCCCCChHHHHHHcCCCCccEEEcCCCCeeeecHHHHHHHHHHH
Q 019711 260 LEVWAYEGSPFCKVVREVLVELELPHLQRSCARGSPKRQILIEKAKHFQVPYLEDPNTGVQMFESADIVEYLRAT 334 (337)
Q Consensus 260 L~l~~l~~sPf~~gvr~tLADl~L~~~l~~v~~g~pk~~e~~~~~p~~qVP~L~d~~~g~~l~ES~~I~~YL~~~ 334 (337)
+++|++..++++..+++.|.+++++|+...++.+ ...+++.+.+|.++||+|+| +|..++||.+|++||+++
T Consensus 2 ~~Ly~~~~~~~~~~v~~~L~~~~i~~e~~~v~~~-~~~~~~~~~~p~~~vP~l~~--~~~~l~es~aI~~yL~~~ 73 (73)
T cd03076 2 YTLTYFPVRGRAEAIRLLLADQGISWEEERVTYE-EWQESLKPKMLFGQLPCFKD--GDLTLVQSNAILRHLGRK 73 (73)
T ss_pred cEEEEeCCcchHHHHHHHHHHcCCCCEEEEecHH-HhhhhhhccCCCCCCCEEEE--CCEEEEcHHHHHHHHhcC
Confidence 5677777899999999999999999999988753 23457889999999999998 578999999999999863
No 83
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.04 E-value=4.5e-10 Score=84.72 Aligned_cols=71 Identities=23% Similarity=0.211 Sum_probs=61.4
Q ss_pred hhhhhhcCCCcchhhHhHHhh--ccCceEEEEcCCCCCChHHHHHHcCCCCccEEEcCCCCeeeecHHHHHHHHH
Q 019711 260 LEVWAYEGSPFCKVVREVLVE--LELPHLQRSCARGSPKRQILIEKAKHFQVPYLEDPNTGVQMFESADIVEYLR 332 (337)
Q Consensus 260 L~l~~l~~sPf~~gvr~tLAD--l~L~~~l~~v~~g~pk~~e~~~~~p~~qVP~L~d~~~g~~l~ES~~I~~YL~ 332 (337)
+++|....||||.++++.|.+ ++++|+.+.++.. .+..+|.+.+|.++||+|+++ +|..++||.+|++||+
T Consensus 1 ~~Ly~~~~s~~~~~~~~~l~~~~~~i~~~~~~~~~~-~~~~~~~~~~p~~~vP~l~~~-~g~~l~es~aI~~yLe 73 (73)
T cd03049 1 MKLLYSPTSPYVRKVRVAAHETGLGDDVELVLVNPW-SDDESLLAVNPLGKIPALVLD-DGEALFDSRVICEYLD 73 (73)
T ss_pred CEEecCCCCcHHHHHHHHHHHhCCCCCcEEEEcCcc-cCChHHHHhCCCCCCCEEEEC-CCCEEECHHHHHhhhC
Confidence 357788889999999999999 8999999888743 356789999999999999864 4789999999999985
No 84
>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma
Probab=99.04 E-value=1.8e-10 Score=86.73 Aligned_cols=71 Identities=17% Similarity=0.099 Sum_probs=61.0
Q ss_pred hhhhhcCCCcchhhHhHHhhccCceEEEEcCCCCCChHHHHHHcCCCCccEEEcCCCCeeeecHHHHHHHHHH
Q 019711 261 EVWAYEGSPFCKVVREVLVELELPHLQRSCARGSPKRQILIEKAKHFQVPYLEDPNTGVQMFESADIVEYLRA 333 (337)
Q Consensus 261 ~l~~l~~sPf~~gvr~tLADl~L~~~l~~v~~g~pk~~e~~~~~p~~qVP~L~d~~~g~~l~ES~~I~~YL~~ 333 (337)
++|++..+++|.++++.|++++++|+.+.++.......++.+.||.++||+|+| +|..++||.+|++||++
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~~~~~~~~~~~~~~~~p~~~vP~L~~--~~~~l~es~aI~~yL~~ 72 (72)
T cd03039 2 KLTYFNIRGRGEPIRLLLADAGVEYEDVRITYEEWPELDLKPTLPFGQLPVLEI--DGKKLTQSNAILRYLAR 72 (72)
T ss_pred EEEEEcCcchHHHHHHHHHHCCCCcEEEEeCHHHhhhhhhccCCcCCCCCEEEE--CCEEEEecHHHHHHhhC
Confidence 467777889999999999999999999988765434445888999999999998 47899999999999974
No 85
>PRK10387 glutaredoxin 2; Provisional
Probab=99.04 E-value=4e-10 Score=101.35 Aligned_cols=75 Identities=27% Similarity=0.391 Sum_probs=63.0
Q ss_pred hhhhhhcCCCcchhhHhHHhhccCceEEEEcCCCCCChHHHHHHcCCCCccEEEcCCCCeeeecHHHHHHHHHHHhCC
Q 019711 260 LEVWAYEGSPFCKVVREVLVELELPHLQRSCARGSPKRQILIEKAKHFQVPYLEDPNTGVQMFESADIVEYLRATYAQ 337 (337)
Q Consensus 260 L~l~~l~~sPf~~gvr~tLADl~L~~~l~~v~~g~pk~~e~~~~~p~~qVP~L~d~~~g~~l~ES~~I~~YL~~~y~~ 337 (337)
+++|++..||||.++++.|.+++++|+.++++.+.+.. -.+.+|.++||+|+.+ +|..++||.+|++||+++|++
T Consensus 1 ~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~~~~~~~~~--~~~~~p~~~VPvL~~~-~g~~l~eS~aI~~yL~~~~~~ 75 (210)
T PRK10387 1 MKLYIYDHCPFCVKARMIFGLKNIPVELIVLANDDEAT--PIRMIGQKQVPILQKD-DGSYMPESLDIVHYIDELDGK 75 (210)
T ss_pred CEEEeCCCCchHHHHHHHHHHcCCCeEEEEcCCCchhh--HHHhcCCcccceEEec-CCeEecCHHHHHHHHHHhCCC
Confidence 46788888999999999999999999999887554322 2678899999999532 588999999999999999963
No 86
>PLN02473 glutathione S-transferase
Probab=99.04 E-value=4.9e-10 Score=101.31 Aligned_cols=75 Identities=21% Similarity=0.230 Sum_probs=67.1
Q ss_pred hhhhhhcCCCcchhhHhHHhhccCceEEEEcCC--CCCChHHHHHHcCCCCccEEEcCCCCeeeecHHHHHHHHHHHhC
Q 019711 260 LEVWAYEGSPFCKVVREVLVELELPHLQRSCAR--GSPKRQILIEKAKHFQVPYLEDPNTGVQMFESADIVEYLRATYA 336 (337)
Q Consensus 260 L~l~~l~~sPf~~gvr~tLADl~L~~~l~~v~~--g~pk~~e~~~~~p~~qVP~L~d~~~g~~l~ES~~I~~YL~~~y~ 336 (337)
++||+...|+++.+++++|.+++++|+.+.++. ++.+.++|+++||.++||+|+| +|..|+||.+|++||+++|+
T Consensus 3 ~kLy~~~~s~~~~rv~~~L~e~gi~ye~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~--~g~~l~ES~aI~~YL~~~~~ 79 (214)
T PLN02473 3 VKVYGQIKAANPQRVLLCFLEKGIEFEVIHVDLDKLEQKKPEHLLRQPFGQVPAIED--GDLKLFESRAIARYYATKYA 79 (214)
T ss_pred eEEecCCCCCchHHHHHHHHHcCCCceEEEecCcccccCCHHHHhhCCCCCCCeEEE--CCEEEEehHHHHHHHHHHcC
Confidence 567877789999999999999999999987764 3467889999999999999998 57899999999999999985
No 87
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=99.02 E-value=8.1e-10 Score=83.74 Aligned_cols=69 Identities=14% Similarity=0.165 Sum_probs=58.8
Q ss_pred ceEEeecCCCcCHHHHHHHHHHcCCCeeEEEcCCCCCCChhHHHhhCCCCCcCeEEcCCCCeeEecchhHHH
Q 019711 140 PIEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIK 211 (337)
Q Consensus 140 ~l~LY~~~~cP~c~kVr~~L~elgl~ye~~~v~~~~~~~~~e~~~~np~~kVP~Lvd~~~g~~l~ES~aIi~ 211 (337)
.++||..++||+|++++.+|+++|++|+.++|... +..++++.+++|..+||+++. +|..+..-+++.+
T Consensus 2 ~v~ly~~~~C~~C~ka~~~L~~~gi~~~~~di~~~-~~~~~el~~~~g~~~vP~v~i--~~~~iGg~~~~~~ 70 (73)
T cd03027 2 RVTIYSRLGCEDCTAVRLFLREKGLPYVEINIDIF-PERKAELEERTGSSVVPQIFF--NEKLVGGLTDLKS 70 (73)
T ss_pred EEEEEecCCChhHHHHHHHHHHCCCceEEEECCCC-HHHHHHHHHHhCCCCcCEEEE--CCEEEeCHHHHHh
Confidence 47899999999999999999999999999998543 345778999999999999987 7877776666544
No 88
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=99.01 E-value=1e-09 Score=80.82 Aligned_cols=70 Identities=14% Similarity=0.426 Sum_probs=61.0
Q ss_pred ceEEeecCCCcCHHHHHHHHHHcCCCeeEEEcCCCCCCChhHHHhhCCCCCcCeEEcCCCCeeEecchhHHHH
Q 019711 140 PIEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKY 212 (337)
Q Consensus 140 ~l~LY~~~~cP~c~kVr~~L~elgl~ye~~~v~~~~~~~~~e~~~~np~~kVP~Lvd~~~g~~l~ES~aIi~Y 212 (337)
+++||...+||+|++++.+|++++++|+.+++....+ ..+++.+++|..++|+++. +|..+.++.+|.+.
T Consensus 1 ~v~ly~~~~Cp~C~~~~~~L~~~~i~~~~~di~~~~~-~~~~l~~~~~~~~~P~~~~--~~~~igg~~~~~~~ 70 (72)
T cd02066 1 KVVVFSKSTCPYCKRAKRLLESLGIEFEEIDILEDGE-LREELKELSGWPTVPQIFI--NGEFIGGYDDLKAL 70 (72)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCcEEEEECCCCHH-HHHHHHHHhCCCCcCEEEE--CCEEEecHHHHHHh
Confidence 4789999999999999999999999999999854333 5678889999999999988 88999999888763
No 89
>PRK13972 GSH-dependent disulfide bond oxidoreductase; Provisional
Probab=99.01 E-value=6.9e-10 Score=100.72 Aligned_cols=76 Identities=21% Similarity=0.308 Sum_probs=64.0
Q ss_pred hhhhhhcCCCcchhhHhHHhhccCceEEEEcCC--CCCChHHHHHHcCCCCccEEEcC---CCC--eeeecHHHHHHHHH
Q 019711 260 LEVWAYEGSPFCKVVREVLVELELPHLQRSCAR--GSPKRQILIEKAKHFQVPYLEDP---NTG--VQMFESADIVEYLR 332 (337)
Q Consensus 260 L~l~~l~~sPf~~gvr~tLADl~L~~~l~~v~~--g~pk~~e~~~~~p~~qVP~L~d~---~~g--~~l~ES~~I~~YL~ 332 (337)
+++|+.. ++++.++++.|.+++++|+.+.++. ++++.++|.++||.++||+|+|. ++| ..|+||.+|++||+
T Consensus 2 ~~Ly~~~-~~~~~~v~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~iNP~gkVP~L~~~~~~d~g~~~~L~ES~AI~~YL~ 80 (215)
T PRK13972 2 IDLYFAP-TPNGHKITLFLEEAELDYRLIKVDLGKGGQFRPEFLRISPNNKIPAIVDHSPADGGEPLSLFESGAILLYLA 80 (215)
T ss_pred eEEEECC-CCChHHHHHHHHHcCCCcEEEEecCcccccCCHHHHhhCcCCCCCEEEeCCCCCCCCceeEEcHHHHHHHHH
Confidence 4567554 7999999999999999999988874 34557899999999999999973 345 57999999999999
Q ss_pred HHhC
Q 019711 333 ATYA 336 (337)
Q Consensus 333 ~~y~ 336 (337)
++|+
T Consensus 81 ~~~~ 84 (215)
T PRK13972 81 EKTG 84 (215)
T ss_pred HhcC
Confidence 9875
No 90
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=99.01 E-value=6e-10 Score=87.90 Aligned_cols=74 Identities=28% Similarity=0.398 Sum_probs=64.7
Q ss_pred CCchhhhhhcCCCcchhhHhHHhhccCceEEEEcCCCCCChHHHHHHcCCCCccEEEcCCCCeeeecHHHHHHHHH
Q 019711 257 PKPLEVWAYEGSPFCKVVREVLVELELPHLQRSCARGSPKRQILIEKAKHFQVPYLEDPNTGVQMFESADIVEYLR 332 (337)
Q Consensus 257 ~k~L~l~~l~~sPf~~gvr~tLADl~L~~~l~~v~~g~pk~~e~~~~~p~~qVP~L~d~~~g~~l~ES~~I~~YL~ 332 (337)
...+++|....||||.++++.|.+.++.|+...++... ..++|.+.||.++||+|+++ +|..++||.+|++||+
T Consensus 16 ~~~~~Ly~~~~sp~~~kv~~~L~~~gl~~~~~~v~~~~-~~~~~~~~np~~~vPvL~~~-~g~~l~eS~aI~~yLe 89 (89)
T cd03055 16 PGIIRLYSMRFCPYAQRARLVLAAKNIPHEVININLKD-KPDWFLEKNPQGKVPALEID-EGKVVYESLIICEYLD 89 (89)
T ss_pred CCcEEEEeCCCCchHHHHHHHHHHcCCCCeEEEeCCCC-CcHHHHhhCCCCCcCEEEEC-CCCEEECHHHHHHhhC
Confidence 36688999999999999999999999999999887643 44668899999999999974 3788999999999985
No 91
>PLN02378 glutathione S-transferase DHAR1
Probab=99.00 E-value=8.8e-10 Score=100.33 Aligned_cols=70 Identities=21% Similarity=0.186 Sum_probs=62.5
Q ss_pred hhcCCCcchhhHhHHhhccCceEEEEcCCCCCChHHHHHHcCCCCccEEEcCCCCeeeecHHHHHHHHHHHhC
Q 019711 264 AYEGSPFCKVVREVLVELELPHLQRSCARGSPKRQILIEKAKHFQVPYLEDPNTGVQMFESADIVEYLRATYA 336 (337)
Q Consensus 264 ~l~~sPf~~gvr~tLADl~L~~~l~~v~~g~pk~~e~~~~~p~~qVP~L~d~~~g~~l~ES~~I~~YL~~~y~ 336 (337)
++..||||.++++.|.+++++|+++.++... +.++|+++||.++||+|++ +|..|+||.+|++||+++|+
T Consensus 16 ~~~~~p~~~rv~~~L~e~gl~~e~~~v~~~~-~~~~~l~inP~G~VPvL~~--~~~~l~ES~aI~~YL~~~~~ 85 (213)
T PLN02378 16 HLGDCPFSQRALLTLEEKSLTYKIHLINLSD-KPQWFLDISPQGKVPVLKI--DDKWVTDSDVIVGILEEKYP 85 (213)
T ss_pred CCCCCcchHHHHHHHHHcCCCCeEEEeCccc-CCHHHHHhCCCCCCCEEEE--CCEEecCHHHHHHHHHHhCC
Confidence 3456999999999999999999999988653 5668999999999999998 46789999999999999986
No 92
>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.
Probab=99.00 E-value=9.4e-10 Score=82.43 Aligned_cols=71 Identities=23% Similarity=0.153 Sum_probs=61.7
Q ss_pred hhhhhhcCCCcchhhHhHHhhccCceEEEEcCC--CCCChHHHHHHcCCCCccEEEcCCCCeeeecHHHHHHHHH
Q 019711 260 LEVWAYEGSPFCKVVREVLVELELPHLQRSCAR--GSPKRQILIEKAKHFQVPYLEDPNTGVQMFESADIVEYLR 332 (337)
Q Consensus 260 L~l~~l~~sPf~~gvr~tLADl~L~~~l~~v~~--g~pk~~e~~~~~p~~qVP~L~d~~~g~~l~ES~~I~~YL~ 332 (337)
+++|.+..++++.++++.|.+++++|+.+.++. +..+..+|.+.+|.++||+|++ +|..++||.+|++||+
T Consensus 1 ~~L~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~--~~~~l~es~aI~~yL~ 73 (73)
T cd03042 1 MILYSYFRSSASYRVRIALNLKGLDYEYVPVNLLKGEQLSPAYRALNPQGLVPTLVI--DGLVLTQSLAIIEYLD 73 (73)
T ss_pred CEEecCCCCcchHHHHHHHHHcCCCCeEEEecCccCCcCChHHHHhCCCCCCCEEEE--CCEEEEcHHHHHHHhC
Confidence 356777789999999999999999999988874 3356788999999999999998 4789999999999984
No 93
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=98.98 E-value=1.4e-09 Score=80.64 Aligned_cols=71 Identities=18% Similarity=0.410 Sum_probs=59.1
Q ss_pred ceEEeecCCCcCHHHHHHHHHHcCCCeeEEEcCCCCCCChhHHHhhCCCCCcCeEEcCCCCeeE--ecchhHHHHH
Q 019711 140 PIEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSM--YESDNIIKYL 213 (337)
Q Consensus 140 ~l~LY~~~~cP~c~kVr~~L~elgl~ye~~~v~~~~~~~~~e~~~~np~~kVP~Lvd~~~g~~l--~ES~aIi~YL 213 (337)
+++||+..+||+|++++.+|+++|++|+.++++.. ++..+++.+.++...||+|++ +|..+ ++..+|.+||
T Consensus 1 ~i~lf~~~~C~~C~~~~~~l~~~~i~~~~vdi~~~-~~~~~~~~~~~~~~~vP~~~~--~~~~~~g~~~~~i~~~i 73 (74)
T TIGR02196 1 KVKVYTTPWCPPCKKAKEYLTSKGIAFEEIDVEKD-SAAREEVLKVLGQRGVPVIVI--GHKIIVGFDPEKLDQLL 73 (74)
T ss_pred CEEEEcCCCChhHHHHHHHHHHCCCeEEEEeccCC-HHHHHHHHHHhCCCcccEEEE--CCEEEeeCCHHHHHHHh
Confidence 48999999999999999999999999999988532 334567889999999999988 67766 6667777665
No 94
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=98.97 E-value=9.9e-10 Score=85.35 Aligned_cols=69 Identities=25% Similarity=0.223 Sum_probs=57.5
Q ss_pred cCCCcchhhHhHHhhccCceEEEEcCCCC--CChHHHHHHcCCCCccEEEcCCCCeeeecHHHHHHHHHHHhC
Q 019711 266 EGSPFCKVVREVLVELELPHLQRSCARGS--PKRQILIEKAKHFQVPYLEDPNTGVQMFESADIVEYLRATYA 336 (337)
Q Consensus 266 ~~sPf~~gvr~tLADl~L~~~l~~v~~g~--pk~~e~~~~~p~~qVP~L~d~~~g~~l~ES~~I~~YL~~~y~ 336 (337)
..||||+++++.|.+++++|+.+.++... +...++ +.+|.++||+|+++ +|..++||.+|++||+++|+
T Consensus 14 ~~Sp~~~kv~~~L~~~~i~~~~~~~~~~~~~~~~~~~-~~~p~~~vP~L~~~-~~~~l~eS~aI~~yL~~~~p 84 (84)
T cd03038 14 AFSPNVWKTRLALNHKGLEYKTVPVEFPDIPPILGEL-TSGGFYTVPVIVDG-SGEVIGDSFAIAEYLEEAYP 84 (84)
T ss_pred CcCChhHHHHHHHHhCCCCCeEEEecCCCcccccccc-cCCCCceeCeEEEC-CCCEEeCHHHHHHHHHHhCc
Confidence 35899999999999999999998876432 223344 78999999999994 27789999999999999985
No 95
>cd03080 GST_N_Metaxin_like GST_N family, Metaxin subfamily, Metaxin-like proteins; a heterogenous group of proteins, predominantly uncharacterized, with similarity to metaxins and GSTs. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. One characterized member of this subgroup is a novel GST from Rhodococcus with toluene o-monooxygenase and gamma-glutamylcysteine synthetase activities. Also members are the cadmium-inducible lysosomal protein CDR-1 and its homologs from C. elegans, and the failed axon connections (fax) protein from Drosophila. CDR-1 is an integral membrane protein that functions to protect against cadmium toxicity and may also have a role in osmoregulation to maintain salt balance in C. ele
Probab=98.96 E-value=8.9e-10 Score=83.95 Aligned_cols=60 Identities=23% Similarity=0.389 Sum_probs=53.8
Q ss_pred CCCcchhhHhHHhhccCceEEEEcCCCCCChHHHHHHcCCCCccEEEcCCCCeeeecHHHHHHHHHHHhC
Q 019711 267 GSPFCKVVREVLVELELPHLQRSCARGSPKRQILIEKAKHFQVPYLEDPNTGVQMFESADIVEYLRATYA 336 (337)
Q Consensus 267 ~sPf~~gvr~tLADl~L~~~l~~v~~g~pk~~e~~~~~p~~qVP~L~d~~~g~~l~ES~~I~~YL~~~y~ 336 (337)
.||||.+++..|.+++++|+...++. .+.+|.++||+|++ +|..++||.+|++||+++|+
T Consensus 16 ~sp~~~~v~~~L~~~gi~~~~~~~~~--------~~~~p~g~vPvl~~--~g~~l~eS~~I~~yL~~~~~ 75 (75)
T cd03080 16 LSPFCLKVETFLRMAGIPYENKFGGL--------AKRSPKGKLPFIEL--NGEKIADSELIIDHLEEKYG 75 (75)
T ss_pred CCHHHHHHHHHHHHCCCCcEEeecCc--------ccCCCCCCCCEEEE--CCEEEcCHHHHHHHHHHHcC
Confidence 58999999999999999999887753 26889999999998 47899999999999999985
No 96
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=3.1e-09 Score=82.69 Aligned_cols=75 Identities=15% Similarity=0.344 Sum_probs=59.5
Q ss_pred CceEEeecCCCcCHHHHHHHHHHcCCCeeEEEcCCCCCCChhHHH-hhCCCCCcCeEEcCCCCeeEecchhHHHHHhh
Q 019711 139 KPIEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVL-QMGGKKQFPYMVDPNTGVSMYESDNIIKYLVG 215 (337)
Q Consensus 139 ~~l~LY~~~~cP~c~kVr~~L~elgl~ye~~~v~~~~~~~~~e~~-~~np~~kVP~Lvd~~~g~~l~ES~aIi~YL~~ 215 (337)
+++++|..++||||.+++.+|+++|++|+.++++........++. +.+|..+||+++. +|..+....++.++...
T Consensus 1 ~~v~iyt~~~CPyC~~ak~~L~~~g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i--~~~~igg~~d~~~~~~~ 76 (80)
T COG0695 1 ANVTIYTKPGCPYCKRAKRLLDRKGVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFI--GGKHVGGCDDLDALEAK 76 (80)
T ss_pred CCEEEEECCCCchHHHHHHHHHHcCCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEE--CCEEEeCcccHHHHHhh
Confidence 468999999999999999999999999999998644433444555 4559999999988 77777777777666543
No 97
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=98.95 E-value=2.6e-09 Score=83.39 Aligned_cols=77 Identities=18% Similarity=0.356 Sum_probs=65.5
Q ss_pred CceEEeecCCCcCHHHHHHHHHH-----cCCCeeEEEcCCCCCCChhHHHhhCCC--CCcCeEEcCCCCeeEecchhHHH
Q 019711 139 KPIEIYEYESCPFCRKVREIVAV-----LDLDVLYYPCPRNGPNFRPKVLQMGGK--KQFPYMVDPNTGVSMYESDNIIK 211 (337)
Q Consensus 139 ~~l~LY~~~~cP~c~kVr~~L~e-----lgl~ye~~~v~~~~~~~~~e~~~~np~--~kVP~Lvd~~~g~~l~ES~aIi~ 211 (337)
|.+++|..++||+|.+++.+|++ .|++|+.+++...+ ...+++.+..+. ..||.++. ||..+.+.++|.+
T Consensus 1 m~v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~-~~~~el~~~~~~~~~~vP~ifi--~g~~igg~~~~~~ 77 (85)
T PRK11200 1 MFVVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEG-ISKADLEKTVGKPVETVPQIFV--DQKHIGGCTDFEA 77 (85)
T ss_pred CEEEEEeCCCChhHHHHHHHHHhhcccccCCcEEEEECCCCh-HHHHHHHHHHCCCCCcCCEEEE--CCEEEcCHHHHHH
Confidence 56899999999999999999999 79999999985432 234567777665 68999987 8999999999999
Q ss_pred HHhhccC
Q 019711 212 YLVGKYG 218 (337)
Q Consensus 212 YL~~~y~ 218 (337)
++.+.|+
T Consensus 78 ~~~~~~~ 84 (85)
T PRK11200 78 YVKENLG 84 (85)
T ss_pred HHHHhcc
Confidence 9999886
No 98
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=98.94 E-value=2.9e-09 Score=80.48 Aligned_cols=71 Identities=18% Similarity=0.427 Sum_probs=60.3
Q ss_pred eEEeecCCCcCHHHHHHHHHHcCCCeeEEEcCCCCCCChhHHHhhCCCC-CcCeEEcCCCCeeEecchhHHHHHh
Q 019711 141 IEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKK-QFPYMVDPNTGVSMYESDNIIKYLV 214 (337)
Q Consensus 141 l~LY~~~~cP~c~kVr~~L~elgl~ye~~~v~~~~~~~~~e~~~~np~~-kVP~Lvd~~~g~~l~ES~aIi~YL~ 214 (337)
++||..++||+|.+++.+|+++|++|+.++|+.. ....+++.+..+.. +||+++. +|..+...++++++-.
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~~i~~~~i~i~~~-~~~~~~~~~~~~~~~~vP~v~i--~g~~igg~~~~~~~~~ 73 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKKGVDYEEIDVDGD-PALREEMINRSGGRRTVPQIFI--GDVHIGGCDDLYALER 73 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHCCCcEEEEECCCC-HHHHHHHHHHhCCCCccCEEEE--CCEEEeChHHHHHHHh
Confidence 7899999999999999999999999999999643 33456677777766 9999987 7889999999988754
No 99
>PRK11752 putative S-transferase; Provisional
Probab=98.94 E-value=1.9e-09 Score=101.58 Aligned_cols=79 Identities=23% Similarity=0.313 Sum_probs=67.6
Q ss_pred CCchhhhhhcCCCcchhhHhHHhhc------cCceEEEEcCC--CCCChHHHHHHcCCCCccEEEcCCC--CeeeecHHH
Q 019711 257 PKPLEVWAYEGSPFCKVVREVLVEL------ELPHLQRSCAR--GSPKRQILIEKAKHFQVPYLEDPNT--GVQMFESAD 326 (337)
Q Consensus 257 ~k~L~l~~l~~sPf~~gvr~tLADl------~L~~~l~~v~~--g~pk~~e~~~~~p~~qVP~L~d~~~--g~~l~ES~~ 326 (337)
.+++++|+.. ++|++++++.|.++ +++|+.+.++. ++++.++|.++||.++||+|+++++ |+.|+||.+
T Consensus 42 ~~~~~Ly~~~-s~~~~rV~i~L~e~~~~~~~gl~ye~~~v~~~~~~~~~~e~~~iNP~GkVP~Lv~~dg~~~~~L~ES~A 120 (264)
T PRK11752 42 KHPLQLYSLG-TPNGQKVTIMLEELLALGVKGAEYDAWLIRIGEGDQFSSGFVEINPNSKIPALLDRSGNPPIRVFESGA 120 (264)
T ss_pred CCCeEEecCC-CCchHHHHHHHHHHHhccCCCCceEEEEecCccccccCHHHHhhCCCCCCCEEEeCCCCCCeEEEcHHH
Confidence 4678999764 99999999999997 88999887764 3456789999999999999998542 588999999
Q ss_pred HHHHHHHHhC
Q 019711 327 IVEYLRATYA 336 (337)
Q Consensus 327 I~~YL~~~y~ 336 (337)
|++||+++|+
T Consensus 121 Il~YL~~~~~ 130 (264)
T PRK11752 121 ILLYLAEKFG 130 (264)
T ss_pred HHHHHHHhcC
Confidence 9999999886
No 100
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=98.94 E-value=1.1e-09 Score=98.53 Aligned_cols=138 Identities=13% Similarity=0.110 Sum_probs=94.8
Q ss_pred CCCcCHHHHHHHHHHcCCCeeEEEcCCCCCCChhHHHhhCCCCCcCeEEcCCCCeeEecchhHHHHHhhccCCCCcchh-
Q 019711 147 ESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLVGKYGDGSVPFM- 225 (337)
Q Consensus 147 ~~cP~c~kVr~~L~elgl~ye~~~v~~~~~~~~~e~~~~np~~kVP~Lvd~~~g~~l~ES~aIi~YL~~~y~~~~~P~~- 225 (337)
-.||||+++.+.|.++|++|....|+.+. ..++|+++.|.+++|+|.. |+.++.+|..|.++|+++|+.+.+|.-
T Consensus 19 Gdcpf~qr~~m~L~~k~~~f~vttVd~~~--kp~~f~~~sp~~~~P~l~~--d~~~~tDs~~Ie~~Lee~l~~p~~~~~~ 94 (221)
T KOG1422|consen 19 GDCPFCQRLFMTLELKGVPFKVTTVDLSR--KPEWFLDISPGGKPPVLKF--DEKWVTDSDKIEEFLEEKLPPPKLPTLA 94 (221)
T ss_pred CCChhHHHHHHHHHHcCCCceEEEeecCC--CcHHHHhhCCCCCCCeEEe--CCceeccHHHHHHHHHHhcCCCCCcccC
Confidence 36999999999999999999998886322 3468999999999999998 889999999999999999998655542
Q ss_pred hhhh--hhhhhhhhhhhhccccCCccCCCCCCCC-------Cchhhhhh--cCCCcchhhHhHHhhccCceEEEEcC
Q 019711 226 LSLG--LLTTLTEGFAMIGRLGKGQSYTPAKLPP-------KPLEVWAY--EGSPFCKVVREVLVELELPHLQRSCA 291 (337)
Q Consensus 226 ~~~~--al~~l~~~l~~~~~~~~g~~~~~~~~~~-------k~L~l~~l--~~sPf~~gvr~tLADl~L~~~l~~v~ 291 (337)
..+- +-..++..+..+. ...........+ +.+.-|-- ...+|+.|+++|++|+.+...++++.
T Consensus 95 ~~E~asag~diF~kF~~fi---~ksk~~~n~~~e~~Ll~~L~~Ld~yL~sp~~~~Fl~Gd~lt~aDcsLlPKL~~i~ 168 (221)
T KOG1422|consen 95 PPESASAGSDIFAKFSAFI---KKSKDAANDGLEKALLKELEKLDDYLKSPSRRKFLDGDKLTLADCSLLPKLHHIK 168 (221)
T ss_pred CHHHHhhHHHHHHHHHHHH---hCchhhccchHHHHHHHHHHHHHHHhcCccCCccccCCeeeeehhhhchhHHHHH
Confidence 1111 1123333333221 111100000001 22222211 34799999999999999998887764
No 101
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=98.93 E-value=4.2e-09 Score=82.81 Aligned_cols=75 Identities=13% Similarity=0.356 Sum_probs=62.6
Q ss_pred eEEeecCCCcCHHHHHHHHHHcC-----CCeeEEEcCCCCCCChhHHHhhCCC--CCcCeEEcCCCCeeEecchhHHHHH
Q 019711 141 IEIYEYESCPFCRKVREIVAVLD-----LDVLYYPCPRNGPNFRPKVLQMGGK--KQFPYMVDPNTGVSMYESDNIIKYL 213 (337)
Q Consensus 141 l~LY~~~~cP~c~kVr~~L~elg-----l~ye~~~v~~~~~~~~~e~~~~np~--~kVP~Lvd~~~g~~l~ES~aIi~YL 213 (337)
++||+.++||+|.+++.+|++++ ++|+.+++...+ ..+.++.+..+. ..||+++. +|..+.++++|..|+
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~-~~~~~l~~~~g~~~~tVP~ifi--~g~~igG~~dl~~~~ 78 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERADFEFRYIDIHAEG-ISKADLEKTVGKPVETVPQIFV--DEKHVGGCTDFEQLV 78 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCCCcEEEEECCCCH-HHHHHHHHHhCCCCCCcCeEEE--CCEEecCHHHHHHHH
Confidence 68999999999999999999994 568888875322 235568788776 79999987 789999999999999
Q ss_pred hhccC
Q 019711 214 VGKYG 218 (337)
Q Consensus 214 ~~~y~ 218 (337)
.++++
T Consensus 79 ~~~~~ 83 (86)
T TIGR02183 79 KENFD 83 (86)
T ss_pred Hhccc
Confidence 99876
No 102
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=98.92 E-value=2.7e-09 Score=96.94 Aligned_cols=73 Identities=26% Similarity=0.384 Sum_probs=62.3
Q ss_pred hhhhhcCCCcchhhHhHHhhccCceEEEEcCCCCCChHHHHHHcCCCCccEEEcCCCCeeeecHHHHHHHHHHHhC
Q 019711 261 EVWAYEGSPFCKVVREVLVELELPHLQRSCARGSPKRQILIEKAKHFQVPYLEDPNTGVQMFESADIVEYLRATYA 336 (337)
Q Consensus 261 ~l~~l~~sPf~~gvr~tLADl~L~~~l~~v~~g~pk~~e~~~~~p~~qVP~L~d~~~g~~l~ES~~I~~YL~~~y~ 336 (337)
++|.+..||||+++++.|.+++++|+.+++..+.+. ...+.||.++||+|+++ +|..++||.+|++||+++|+
T Consensus 1 ~Ly~~~~sp~~~kvr~~L~~~gl~~e~~~~~~~~~~--~~~~~np~g~vP~l~~~-~g~~l~es~~I~~yL~~~~~ 73 (209)
T TIGR02182 1 KLYIYDHCPFCVRARMIFGLKNIPVEKHVLLNDDEE--TPIRMIGAKQVPILQKD-DGRAMPESLDIVAYFDKLDG 73 (209)
T ss_pred CeecCCCCChHHHHHHHHHHcCCCeEEEECCCCcch--hHHHhcCCCCcceEEee-CCeEeccHHHHHHHHHHhCC
Confidence 367778899999999999999999999888655432 34789999999999832 57899999999999999986
No 103
>PF02798 GST_N: Glutathione S-transferase, N-terminal domain; InterPro: IPR004045 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of Cephalopoda is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Soluble GSTs activate glutathione (GSH) to GS-. In many GSTs, this is accomplished by a Tyr at H-bonding distance from the sulphur of GSH. These enzymes catalyse nucleophilic attack by reduced glutathione (GSH) on nonpolar compounds that contain an electrophillic carbon, nitrogen, or sulphur atom []. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold, with each monomer composed of two distinct domains []. The N-terminal domain forms a thioredoxin-like fold that binds the glutathione moiety, while the C-terminal domain contains several hydrophobic alpha-helices that specifically bind hydrophobic substrates. This entry represents the N-terminal domain of GST.; GO: 0005515 protein binding; PDB: 2VCT_H 2WJU_B 4ACS_A 1BYE_D 1AXD_B 2VCV_P 1TDI_A 1JLV_D 1Y6E_A 1U88_B ....
Probab=98.92 E-value=3.2e-09 Score=81.38 Aligned_cols=64 Identities=25% Similarity=0.249 Sum_probs=55.0
Q ss_pred CcchhhHhHHhhccCceEEEEcCC--CCCChHHHHHHcCC-CCccEEEcCCCCeeeecHHHHHHHHHH
Q 019711 269 PFCKVVREVLVELELPHLQRSCAR--GSPKRQILIEKAKH-FQVPYLEDPNTGVQMFESADIVEYLRA 333 (337)
Q Consensus 269 Pf~~gvr~tLADl~L~~~l~~v~~--g~pk~~e~~~~~p~-~qVP~L~d~~~g~~l~ES~~I~~YL~~ 333 (337)
..+...++.|++.++.|+...++. +..+.++|.+.+|. ++||+|+|+ +|..++||.||++||++
T Consensus 10 ~~~~~~r~~l~~~gv~~e~~~v~~~~~~~~~~e~~~~~p~~g~vP~l~~~-~~~~l~es~AI~~YLa~ 76 (76)
T PF02798_consen 10 GRSERIRLLLAEKGVEYEDVRVDFEKGEHKSPEFLAINPMFGKVPALEDG-DGFVLTESNAILRYLAR 76 (76)
T ss_dssp TTTHHHHHHHHHTT--EEEEEEETTTTGGGSHHHHHHTTTSSSSSEEEET-TTEEEESHHHHHHHHHH
T ss_pred CchHHHHHHHHHhcccCceEEEecccccccchhhhhcccccceeeEEEEC-CCCEEEcHHHHHHHhCC
Confidence 388899999999999999988874 44566999999999 999999995 49999999999999985
No 104
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=98.91 E-value=3.1e-09 Score=77.17 Aligned_cols=70 Identities=31% Similarity=0.403 Sum_probs=60.9
Q ss_pred hhhhhcCCCcchhhHhHHhhccCceEEEEcCCCCCChHHHHHHcCCCCccEEEcCCCCeeeecHHHHHHHHH
Q 019711 261 EVWAYEGSPFCKVVREVLVELELPHLQRSCARGSPKRQILIEKAKHFQVPYLEDPNTGVQMFESADIVEYLR 332 (337)
Q Consensus 261 ~l~~l~~sPf~~gvr~tLADl~L~~~l~~v~~g~pk~~e~~~~~p~~qVP~L~d~~~g~~l~ES~~I~~YL~ 332 (337)
++|.+..||+|...+..|.+.+++|+...++.......++.+.+|.+++|+|++ +|..++||.+|++||+
T Consensus 2 ~ly~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~--~~~~~~es~~I~~yl~ 71 (71)
T cd00570 2 KLYYFPGSPRSLRVRLALEEKGLPYELVPVDLGEGEQEEFLALNPLGKVPVLED--GGLVLTESLAILEYLA 71 (71)
T ss_pred EEEeCCCCccHHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHhcCCCCCCCEEEE--CCEEEEcHHHHHHHhC
Confidence 567788899999999999999999999998865433336888999999999999 4789999999999984
No 105
>PLN02907 glutamate-tRNA ligase
Probab=98.91 E-value=1e-09 Score=116.38 Aligned_cols=141 Identities=9% Similarity=-0.027 Sum_probs=95.5
Q ss_pred CceEEeecCCCcCHHHHHHHHHHcCCCeeEEEcCCCCCCChhHHHhhCCCCCcCeEEcCCCCeeEecchhHHHHHhhccC
Q 019711 139 KPIEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLVGKYG 218 (337)
Q Consensus 139 ~~l~LY~~~~cP~c~kVr~~L~elgl~ye~~~v~~~~~~~~~e~~~~np~~kVP~Lvd~~~g~~l~ES~aIi~YL~~~y~ 218 (337)
|.++||..+.++ +.++.++|+++|++|+.+. .+|.++||+|+++ +|..|+||.||++||+++|+
T Consensus 1 ~~~kLy~~~~S~-~~~v~~~L~~lgv~~e~~~--------------~~p~GkVPvLv~d-dG~~L~ES~AIl~YLa~~~p 64 (722)
T PLN02907 1 MEAKLSFPPDSP-PLAVIAAAKVAGVPLTIDP--------------SLKSGSAPTLLFS-SGEKLTGTNVLLRYIARSAS 64 (722)
T ss_pred CeEEEEECCCCC-hHHHHHHHHHcCCCcEEee--------------cCCCCCCcEEEEC-CCCEEECHHHHHHHHHHhCC
Confidence 448899987765 5679999999999999864 2589999999842 78899999999999999997
Q ss_pred C-CCcchhhhhhhh-hhhhhhhhhhccccCCccCCCCCCCCCchhhh--hhcCCCcchhhHhHHhhccCceEE-----EE
Q 019711 219 D-GSVPFMLSLGLL-TTLTEGFAMIGRLGKGQSYTPAKLPPKPLEVW--AYEGSPFCKVVREVLVELELPHLQ-----RS 289 (337)
Q Consensus 219 ~-~~~P~~~~~~al-~~l~~~l~~~~~~~~g~~~~~~~~~~k~L~l~--~l~~sPf~~gvr~tLADl~L~~~l-----~~ 289 (337)
. .++|.+...++. ..+..+..... .+ ....+.+..+ ++..++|++|+++|+||+.+...+ .+
T Consensus 65 ~~~L~p~d~~erAqV~qWL~~~~~~~---~~------~~l~~~L~~LE~~L~~rtYLvGd~lTLADIaL~~~L~~~~~~~ 135 (722)
T PLN02907 65 LPGFYGQDAFESSQVDEWLDYAPTFS---SG------SEFENACEYVDGYLASRTFLVGYSLTIADIAIWSGLAGSGQRW 135 (722)
T ss_pred CcCCCCCCHHHHHHHHHHHHHHhhcc---cH------HHHHHHHHHHHHHhccCCeecCCCCCHHHHHHHHHHHhhhhhh
Confidence 5 367766555542 22222221110 00 0011223333 456789999999999999986443 22
Q ss_pred cC----CCCCChHHHHHHc
Q 019711 290 CA----RGSPKRQILIEKA 304 (337)
Q Consensus 290 v~----~g~pk~~e~~~~~ 304 (337)
.. ..-+++..|+++.
T Consensus 136 ~~~~~~~~yPnL~RW~erI 154 (722)
T PLN02907 136 ESLRKSKKYQNLVRWFNSI 154 (722)
T ss_pred hcccccccCHHHHHHHHHH
Confidence 21 1227888888765
No 106
>KOG1695 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=3.1e-09 Score=96.77 Aligned_cols=77 Identities=16% Similarity=0.219 Sum_probs=66.8
Q ss_pred CCceEEeecCCCcCHHHHHHHHHHcCCCeeEEEcCCCCCCChhHHHhhCCCCCcCeEEcCCCCeeEecchhHHHHHhhcc
Q 019711 138 EKPIEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLVGKY 217 (337)
Q Consensus 138 ~~~l~LY~~~~cP~c~kVr~~L~elgl~ye~~~v~~~~~~~~~e~~~~np~~kVP~Lvd~~~g~~l~ES~aIi~YL~~~y 217 (337)
|++++|++|.....|.-+|+++...|++||.+.+..... -.+.+...|.+++|+|.. ||..|.+|.||++||+++|
T Consensus 1 m~~ykL~Yf~~RG~ae~iR~lf~~a~v~fEd~r~~~~~~--w~~~K~~~pfgqlP~l~v--Dg~~i~QS~AI~RyLArk~ 76 (206)
T KOG1695|consen 1 MPPYKLTYFNIRGLAEPIRLLFAYAGVSFEDKRITMEDA--WEELKDKMPFGQLPVLEV--DGKKLVQSRAILRYLARKF 76 (206)
T ss_pred CCceEEEecCcchhHHHHHHHHHhcCCCcceeeeccccc--hhhhcccCCCCCCCEEeE--CCEeeccHHHHHHHHHHHh
Confidence 567899999999999999999999999999999854331 234556689999999976 7999999999999999999
Q ss_pred C
Q 019711 218 G 218 (337)
Q Consensus 218 ~ 218 (337)
|
T Consensus 77 g 77 (206)
T KOG1695|consen 77 G 77 (206)
T ss_pred C
Confidence 8
No 107
>cd03075 GST_N_Mu GST_N family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the most abundant GSTs in human liver, skeletal muscle and brain, and are believed to provide protection against diseases inc
Probab=98.90 E-value=3.2e-09 Score=82.67 Aligned_cols=72 Identities=15% Similarity=0.204 Sum_probs=58.1
Q ss_pred hhhhcCCCcchhhHhHHhhccCceEEEEcCCCC--CC-hHHHHHH-----cCCCCccEEEcCCCCeeeecHHHHHHHHHH
Q 019711 262 VWAYEGSPFCKVVREVLVELELPHLQRSCARGS--PK-RQILIEK-----AKHFQVPYLEDPNTGVQMFESADIVEYLRA 333 (337)
Q Consensus 262 l~~l~~sPf~~gvr~tLADl~L~~~l~~v~~g~--pk-~~e~~~~-----~p~~qVP~L~d~~~g~~l~ES~~I~~YL~~ 333 (337)
+|.+..++.|..+++.|.+++++|+.+.++... .. .++|.+. +|.++||+|+| +|..++||.||+.||.+
T Consensus 3 l~y~~~~~~~~~~~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~~~~~~~~P~g~vP~L~~--~g~~l~ES~AIl~YLa~ 80 (82)
T cd03075 3 LGYWDIRGLAQPIRLLLEYTGEKYEEKRYELGDAPDYDRSQWLNEKFKLGLDFPNLPYYID--GDVKLTQSNAILRYIAR 80 (82)
T ss_pred EEEeCCccccHHHHHHHHHcCCCcEEEEeccCCccccchHhhhccchhcCCcCCCCCEEEE--CCEEEeehHHHHHHHhh
Confidence 455566789999999999999999998887532 21 3566532 29999999998 58899999999999998
Q ss_pred Hh
Q 019711 334 TY 335 (337)
Q Consensus 334 ~y 335 (337)
+|
T Consensus 81 ~~ 82 (82)
T cd03075 81 KH 82 (82)
T ss_pred cC
Confidence 76
No 108
>KOG3029 consensus Glutathione S-transferase-related protein [General function prediction only]
Probab=98.90 E-value=2.4e-09 Score=100.05 Aligned_cols=71 Identities=28% Similarity=0.549 Sum_probs=59.3
Q ss_pred CceEEeecCCCcCHHHHHHHHHHcCCCeeEEEcCCCCCCChhHHHhhCCCCCcCeEEcCCCCeeEecchhHHHHHhh
Q 019711 139 KPIEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLVG 215 (337)
Q Consensus 139 ~~l~LY~~~~cP~c~kVr~~L~elgl~ye~~~v~~~~~~~~~e~~~~np~~kVP~Lvd~~~g~~l~ES~aIi~YL~~ 215 (337)
-.++||+|+.||||.|||.+|...||+|+.++|+ +-.+.| .+.+-..|||+|.. +|+.|.||..||.-|+.
T Consensus 89 L~l~LyQyetCPFCcKVrAFLDyhgisY~VVEVn---pV~r~e-Ik~SsykKVPil~~--~Geqm~dSsvIIs~laT 159 (370)
T KOG3029|consen 89 LDLVLYQYETCPFCCKVRAFLDYHGISYAVVEVN---PVLRQE-IKWSSYKKVPILLI--RGEQMVDSSVIISLLAT 159 (370)
T ss_pred ceEEEEeeccCchHHHHHHHHhhcCCceEEEEec---chhhhh-ccccccccccEEEe--ccceechhHHHHHHHHH
Confidence 4699999999999999999999999999999993 333444 35568899999976 57789999999986644
No 109
>TIGR00862 O-ClC intracellular chloride channel protein. These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney.
Probab=98.90 E-value=3.5e-09 Score=98.57 Aligned_cols=69 Identities=17% Similarity=0.130 Sum_probs=63.0
Q ss_pred hcCCCcchhhHhHHhhccCceEEEEcCCCCCChHHHHHHcCCCCccEEEcCCCCeeeecHHHHHHHHHHHhC
Q 019711 265 YEGSPFCKVVREVLVELELPHLQRSCARGSPKRQILIEKAKHFQVPYLEDPNTGVQMFESADIVEYLRATYA 336 (337)
Q Consensus 265 l~~sPf~~gvr~tLADl~L~~~l~~v~~g~pk~~e~~~~~p~~qVP~L~d~~~g~~l~ES~~I~~YL~~~y~ 336 (337)
+..||||++++++|.+++++|++..++... +.++|+++||.++||+|+| +|..++||.+|++||+++|+
T Consensus 16 ~~~cp~~~rv~i~L~ekgi~~e~~~vd~~~-~~~~fl~inP~g~vPvL~~--~g~~l~ES~aI~eYL~e~~~ 84 (236)
T TIGR00862 16 IGNCPFSQRLFMILWLKGVVFNVTTVDLKR-KPEDLQNLAPGTHPPFLTY--NTEVKTDVNKIEEFLEETLC 84 (236)
T ss_pred CCCCHhHHHHHHHHHHcCCCcEEEEECCCC-CCHHHHHHCcCCCCCEEEE--CCEEeecHHHHHHHHHHHcC
Confidence 457999999999999999999999998764 4688999999999999999 58899999999999999985
No 110
>cd03043 GST_N_1 GST_N family, unknown subfamily 1; composed of uncharacterized proteins, predominantly from bacteria, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=98.88 E-value=4.9e-09 Score=79.66 Aligned_cols=67 Identities=22% Similarity=0.241 Sum_probs=58.1
Q ss_pred hhcCCCcchhhHhHHhhccCceEEEEcCCCC-CChHHHHHHcCCCCccEEEcCCCCeeeecHHHHHHHHH
Q 019711 264 AYEGSPFCKVVREVLVELELPHLQRSCARGS-PKRQILIEKAKHFQVPYLEDPNTGVQMFESADIVEYLR 332 (337)
Q Consensus 264 ~l~~sPf~~gvr~tLADl~L~~~l~~v~~g~-pk~~e~~~~~p~~qVP~L~d~~~g~~l~ES~~I~~YL~ 332 (337)
+...++|++++++.|++++++|+...++... .+.++|.+.+|.++||+|++ +|..++||.+|++||.
T Consensus 6 ~~~~s~~s~~v~~~L~~~gl~~e~~~v~~~~~~~~~~~~~~nP~g~vP~L~~--~g~~l~eS~aI~~YL~ 73 (73)
T cd03043 6 NKNYSSWSLRPWLLLKAAGIPFEEILVPLYTPDTRARILEFSPTGKVPVLVD--GGIVVWDSLAICEYLA 73 (73)
T ss_pred CCCCCHHHHHHHHHHHHcCCCCEEEEeCCCCccccHHHHhhCCCCcCCEEEE--CCEEEEcHHHHHHHhC
Confidence 3456899999999999999999998887543 34678899999999999998 5789999999999984
No 111
>KOG0868 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=2.4e-09 Score=94.24 Aligned_cols=77 Identities=23% Similarity=0.213 Sum_probs=68.4
Q ss_pred chhhhhhcCCCcchhhHhHHhhccCceEEEEcCC--C-CCChHHHHHHcCCCCccEEEcCCCCeeeecHHHHHHHHHHHh
Q 019711 259 PLEVWAYEGSPFCKVVREVLVELELPHLQRSCAR--G-SPKRQILIEKAKHFQVPYLEDPNTGVQMFESADIVEYLRATY 335 (337)
Q Consensus 259 ~L~l~~l~~sPf~~gvr~tLADl~L~~~l~~v~~--g-~pk~~e~~~~~p~~qVP~L~d~~~g~~l~ES~~I~~YL~~~y 335 (337)
...+|++..|....++|+.|+-.+|.|+...++. + .....+|.+.||.++||.|++ +|+.+.||.||++||+|+|
T Consensus 5 KpiLYSYWrSSCswRVRiALaLK~iDYey~PvnLlk~~~q~~~ef~~iNPm~kVP~L~i--~g~tl~eS~AII~YLeEt~ 82 (217)
T KOG0868|consen 5 KPILYSYWRSSCSWRVRIALALKGIDYEYKPVNLLKEEDQSDSEFKEINPMEKVPTLVI--DGLTLTESLAIIEYLEETY 82 (217)
T ss_pred cchhhhhhcccchHHHHHHHHHcCCCcceeehhhhcchhhhhhHHhhcCchhhCCeEEE--CCEEeehHHHHHHHHHhcC
Confidence 4568888888899999999999999999998873 2 355679999999999999999 7999999999999999999
Q ss_pred CC
Q 019711 336 AQ 337 (337)
Q Consensus 336 ~~ 337 (337)
++
T Consensus 83 P~ 84 (217)
T KOG0868|consen 83 PD 84 (217)
T ss_pred CC
Confidence 74
No 112
>cd03077 GST_N_Alpha GST_N family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Alpha subfamily is composed of eukaryotic GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GSTA3-3 catalyzes the isomerization of intermediates in steroid hormone biosynthesis. GSTA4-4 preferentially catalyzes the
Probab=98.88 E-value=6e-09 Score=80.44 Aligned_cols=70 Identities=17% Similarity=0.283 Sum_probs=58.7
Q ss_pred hhhhhcCCCcchhhHhHHhhccCceEEEEcCCCCCChHHHHHHc-----CCCCccEEEcCCCCeeeecHHHHHHHHHHHh
Q 019711 261 EVWAYEGSPFCKVVREVLVELELPHLQRSCARGSPKRQILIEKA-----KHFQVPYLEDPNTGVQMFESADIVEYLRATY 335 (337)
Q Consensus 261 ~l~~l~~sPf~~gvr~tLADl~L~~~l~~v~~g~pk~~e~~~~~-----p~~qVP~L~d~~~g~~l~ES~~I~~YL~~~y 335 (337)
++|++..++.+..+++.|.+++++|+.+.++.+ ++|.+.+ +.++||+|++ +|..++||.||+.||.++|
T Consensus 3 ~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~v~~~----~~~~~~~~~~~~~~g~vP~L~~--~g~~l~ES~AI~~YL~~~~ 76 (79)
T cd03077 3 VLHYFNGRGRMESIRWLLAAAGVEFEEKFIESA----EDLEKLKKDGSLMFQQVPMVEI--DGMKLVQTRAILNYIAGKY 76 (79)
T ss_pred EEEEeCCCChHHHHHHHHHHcCCCcEEEEeccH----HHHHhhccccCCCCCCCCEEEE--CCEEEeeHHHHHHHHHHHc
Confidence 466777788899999999999999999888643 3555554 4789999998 5789999999999999998
Q ss_pred C
Q 019711 336 A 336 (337)
Q Consensus 336 ~ 336 (337)
+
T Consensus 77 ~ 77 (79)
T cd03077 77 N 77 (79)
T ss_pred C
Confidence 6
No 113
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=98.86 E-value=8.7e-09 Score=77.72 Aligned_cols=73 Identities=14% Similarity=0.271 Sum_probs=58.2
Q ss_pred ceEEeecCCCcCHHHHHHHHHHcCCCeeEEEcCCCCCCChhHHHhhC-CCCCcCeEEcCCCCeeEec--chhHHHHHh
Q 019711 140 PIEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMG-GKKQFPYMVDPNTGVSMYE--SDNIIKYLV 214 (337)
Q Consensus 140 ~l~LY~~~~cP~c~kVr~~L~elgl~ye~~~v~~~~~~~~~e~~~~n-p~~kVP~Lvd~~~g~~l~E--S~aIi~YL~ 214 (337)
.++||...+||+|++++.+|++++++|+.++++.+ +....++.++| +...||+++.. +|..+.+ +..|..+|.
T Consensus 1 ~v~ly~~~~C~~C~~~~~~L~~~~~~~~~idi~~~-~~~~~~~~~~~~~~~~vP~i~~~-~g~~l~~~~~~~~~~~l~ 76 (77)
T TIGR02200 1 TITVYGTTWCGYCAQLMRTLDKLGAAYEWVDIEED-EGAADRVVSVNNGNMTVPTVKFA-DGSFLTNPSAAQVKAKLQ 76 (77)
T ss_pred CEEEEECCCChhHHHHHHHHHHcCCceEEEeCcCC-HhHHHHHHHHhCCCceeCEEEEC-CCeEecCCCHHHHHHHhh
Confidence 37899999999999999999999999999988543 33456777887 99999999632 6777665 456777764
No 114
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=98.86 E-value=8.3e-09 Score=76.41 Aligned_cols=63 Identities=13% Similarity=0.366 Sum_probs=53.3
Q ss_pred ceEEeecCCCcCHHHHHHHHHHcCCCeeEEEcCCCCCCChhHHHhhCCCCCcCeEEcCCCCeeEec
Q 019711 140 PIEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYE 205 (337)
Q Consensus 140 ~l~LY~~~~cP~c~kVr~~L~elgl~ye~~~v~~~~~~~~~e~~~~np~~kVP~Lvd~~~g~~l~E 205 (337)
.+++|+..+||+|++++.+|+++|++|..++++.. .+..++|.++||.++||+|++ +|..+.+
T Consensus 1 ~v~l~~~~~c~~c~~~~~~l~~~~i~~~~~~i~~~-~~~~~~~~~~~~~~~vP~i~~--~~~~i~g 63 (73)
T cd02976 1 EVTVYTKPDCPYCKATKRFLDERGIPFEEVDVDED-PEALEELKKLNGYRSVPVVVI--GDEHLSG 63 (73)
T ss_pred CEEEEeCCCChhHHHHHHHHHHCCCCeEEEeCCCC-HHHHHHHHHHcCCcccCEEEE--CCEEEec
Confidence 37899999999999999999999999999998543 345678899999999999988 6665544
No 115
>PRK10542 glutathionine S-transferase; Provisional
Probab=98.85 E-value=4.8e-09 Score=93.66 Aligned_cols=74 Identities=19% Similarity=0.150 Sum_probs=61.4
Q ss_pred hhhhhcCCCcchhhHhHHhhccCceEEEEcCCCC---CChHHHHHHcCCCCccEEEcCCCCeeeecHHHHHHHHHHHhC
Q 019711 261 EVWAYEGSPFCKVVREVLVELELPHLQRSCARGS---PKRQILIEKAKHFQVPYLEDPNTGVQMFESADIVEYLRATYA 336 (337)
Q Consensus 261 ~l~~l~~sPf~~gvr~tLADl~L~~~l~~v~~g~---pk~~e~~~~~p~~qVP~L~d~~~g~~l~ES~~I~~YL~~~y~ 336 (337)
++|+...+ ++.++++.|++++|+|+...++... .+.++|.++||.++||+|+++ +|..++||.+|++||+++|+
T Consensus 2 ~l~~~~~s-~~~~~~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~nP~g~vPvL~~~-~g~~l~eS~aI~~YL~~~~~ 78 (201)
T PRK10542 2 KLFYKPGA-CSLASHITLRESGLDFTLVSVDLAKKRLENGDDYLAINPKGQVPALLLD-DGTLLTEGVAIMQYLADSVP 78 (201)
T ss_pred ceeecccH-HHHHHHHHHHHcCCCceEEEeecccccccCChHHHHhCcCCCCCeEEeC-CCcEeecHHHHHHHHHHhCc
Confidence 46655444 6888999999999999998887532 345789999999999999853 58899999999999999986
No 116
>TIGR01262 maiA maleylacetoacetate isomerase. Maleylacetoacetate isomerase is an enzyme of tyrosine and phenylalanine catabolism. It requires glutathione and belongs by homology to the zeta family of glutathione S-transferases. The enzyme (EC 5.2.1.2) is described as active also on maleylpyruvate, and the example from a Ralstonia sp. catabolic plasmid is described as a maleylpyruvate isomerase involved in gentisate catabolism.
Probab=98.84 E-value=7.1e-09 Score=93.22 Aligned_cols=73 Identities=22% Similarity=0.210 Sum_probs=64.6
Q ss_pred hhhhcCCCcchhhHhHHhhccCceEEEEcCCC---CCChHHHHHHcCCCCccEEEcCCCCeeeecHHHHHHHHHHHhC
Q 019711 262 VWAYEGSPFCKVVREVLVELELPHLQRSCARG---SPKRQILIEKAKHFQVPYLEDPNTGVQMFESADIVEYLRATYA 336 (337)
Q Consensus 262 l~~l~~sPf~~gvr~tLADl~L~~~l~~v~~g---~pk~~e~~~~~p~~qVP~L~d~~~g~~l~ES~~I~~YL~~~y~ 336 (337)
||++..|++++++++.|.+++++|+...++.. .++.++|.+.||.++||+|++ +|..++||.+|++||+++|+
T Consensus 2 Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~nP~g~vP~L~~--~g~~l~ES~aI~~yl~~~~~ 77 (210)
T TIGR01262 2 LYSYWRSSCSYRVRIALALKGIDYEYVPVNLLRDGEQRSPEFLALNPQGLVPTLDI--DGEVLTQSLAIIEYLEETYP 77 (210)
T ss_pred cccCCCCCchHHHHHHHHHCCCCceEEecccccccccCChhhhhcCCCCcCCEEEE--CCEEeecHHHHHHHHHHhCC
Confidence 66677899999999999999999999888752 345678999999999999998 58899999999999999985
No 117
>PHA03050 glutaredoxin; Provisional
Probab=98.82 E-value=1.2e-08 Score=83.91 Aligned_cols=71 Identities=17% Similarity=0.324 Sum_probs=61.3
Q ss_pred CceEEeecCCCcCHHHHHHHHHHcCC---CeeEEEcCCC--CCCChhHHHhhCCCCCcCeEEcCCCCeeEecchhHHH
Q 019711 139 KPIEIYEYESCPFCRKVREIVAVLDL---DVLYYPCPRN--GPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIK 211 (337)
Q Consensus 139 ~~l~LY~~~~cP~c~kVr~~L~elgl---~ye~~~v~~~--~~~~~~e~~~~np~~kVP~Lvd~~~g~~l~ES~aIi~ 211 (337)
..+++|...+||||.+++.+|+++|+ +|+.++|+.. +...+.++.+.++..+||.++. +|..|...+++..
T Consensus 13 ~~V~vys~~~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI--~g~~iGG~ddl~~ 88 (108)
T PHA03050 13 NKVTIFVKFTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGGRTVPRIFF--GKTSIGGYSDLLE 88 (108)
T ss_pred CCEEEEECCCChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEEE--CCEEEeChHHHHH
Confidence 46999999999999999999999999 8999998642 2335778999999999999988 7888888888776
No 118
>KOG0406 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=7.8e-09 Score=95.27 Aligned_cols=76 Identities=32% Similarity=0.359 Sum_probs=69.4
Q ss_pred CchhhhhhcCCCcchhhHhHHhhccCceEEEEcCCCCCChHHHHHHc-CCCCccEEEcCCCCeeeecHHHHHHHHHHHhC
Q 019711 258 KPLEVWAYEGSPFCKVVREVLVELELPHLQRSCARGSPKRQILIEKA-KHFQVPYLEDPNTGVQMFESADIVEYLRATYA 336 (337)
Q Consensus 258 k~L~l~~l~~sPf~~gvr~tLADl~L~~~l~~v~~g~pk~~e~~~~~-p~~qVP~L~d~~~g~~l~ES~~I~~YL~~~y~ 336 (337)
..+.||.+..|||..+++++|...+|+|+++..+..+ +.+.+++.| .+++||+|++ .|..+.||..|++||+++|+
T Consensus 8 ~~vrL~~~w~sPfa~R~~iaL~~KgI~yE~veedl~~-Ks~~ll~~np~hkKVPvL~H--n~k~i~ESliiveYiDe~w~ 84 (231)
T KOG0406|consen 8 GTVKLLGMWFSPFAQRVRIALKLKGIPYEYVEEDLTN-KSEWLLEKNPVHKKVPVLEH--NGKPICESLIIVEYIDETWP 84 (231)
T ss_pred CeEEEEEeecChHHHHHHHHHHhcCCceEEEecCCCC-CCHHHHHhccccccCCEEEE--CCceehhhHHHHHHHHhhcc
Confidence 5678898899999999999999999999999998765 888889999 6999999999 46679999999999999997
No 119
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=98.81 E-value=1.3e-08 Score=78.04 Aligned_cols=72 Identities=17% Similarity=0.412 Sum_probs=61.9
Q ss_pred eEEeecCCCcCHHHHHHHHHHcCCCeeEEEcCCCCCCChhHHHhhCCCCCcCeEEcCCCCeeEecchhHHHHHhh
Q 019711 141 IEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLVG 215 (337)
Q Consensus 141 l~LY~~~~cP~c~kVr~~L~elgl~ye~~~v~~~~~~~~~e~~~~np~~kVP~Lvd~~~g~~l~ES~aIi~YL~~ 215 (337)
++||..++||+|.+++.+|+++|++|+.++|+.. +...+++.+.++...||+++. +|..+...+++..+-.+
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~~i~~~~~di~~~-~~~~~~~~~~~g~~~vP~i~i--~g~~igg~~~~~~~~~~ 72 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSKGVTFTEIRVDGD-PALRDEMMQRSGRRTVPQIFI--GDVHVGGCDDLYALDRE 72 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHcCCCcEEEEecCC-HHHHHHHHHHhCCCCcCEEEE--CCEEEcChHHHHHHHHc
Confidence 5799999999999999999999999999999643 345678888899999999987 78888888888877654
No 120
>PLN02395 glutathione S-transferase
Probab=98.80 E-value=1.1e-08 Score=92.37 Aligned_cols=74 Identities=22% Similarity=0.233 Sum_probs=62.5
Q ss_pred hhhhhhcCCCcchhhHhHHhhccCceEEEEcCC--CCCChHHHHHHcCCCCccEEEcCCCCeeeecHHHHHHHHHHHhC
Q 019711 260 LEVWAYEGSPFCKVVREVLVELELPHLQRSCAR--GSPKRQILIEKAKHFQVPYLEDPNTGVQMFESADIVEYLRATYA 336 (337)
Q Consensus 260 L~l~~l~~sPf~~gvr~tLADl~L~~~l~~v~~--g~pk~~e~~~~~p~~qVP~L~d~~~g~~l~ES~~I~~YL~~~y~ 336 (337)
+++|+.. +.+++++++.|.+++++|+.+.++. ++.+.++|.+.||.++||+|+| +|..|+||.+|++||+++|+
T Consensus 3 ~~ly~~~-~~~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~--~~~~l~ES~aI~~YL~~~~~ 78 (215)
T PLN02395 3 LKVYGPA-FASPKRALVTLIEKGVEFETVPVDLMKGEHKQPEYLALQPFGVVPVIVD--GDYKIFESRAIMRYYAEKYR 78 (215)
T ss_pred EEEEcCC-cCcHHHHHHHHHHcCCCceEEEeccccCCcCCHHHHhhCCCCCCCEEEE--CCEEEEcHHHHHHHHHHHcC
Confidence 4566543 3468999999999999999988774 3456789999999999999998 57899999999999999985
No 121
>KOG0867 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=1.1e-08 Score=94.53 Aligned_cols=76 Identities=29% Similarity=0.424 Sum_probs=69.0
Q ss_pred chhhhhhcCCCcchhhHhHHhhccCceEEEEcC--CCCCChHHHHHHcCCCCccEEEcCCCCeeeecHHHHHHHHHHHhC
Q 019711 259 PLEVWAYEGSPFCKVVREVLVELELPHLQRSCA--RGSPKRQILIEKAKHFQVPYLEDPNTGVQMFESADIVEYLRATYA 336 (337)
Q Consensus 259 ~L~l~~l~~sPf~~gvr~tLADl~L~~~l~~v~--~g~pk~~e~~~~~p~~qVP~L~d~~~g~~l~ES~~I~~YL~~~y~ 336 (337)
.+++|+...++.|+.+-+++..+++.+++..++ .++++.++|+++||.++||+|+| +|..++||.||+.||.++|+
T Consensus 2 ~~~ly~~~~s~~~r~vl~~~~~~~l~~e~~~v~~~~ge~~~pefl~~nP~~kVP~l~d--~~~~l~eS~AI~~Yl~~ky~ 79 (226)
T KOG0867|consen 2 KLKLYGHLGSPPARAVLIAAKELGLEVELKPVDLVKGEQKSPEFLKLNPLGKVPALED--GGLTLWESHAILRYLAEKYG 79 (226)
T ss_pred CceEeecCCCcchHHHHHHHHHcCCceeEEEeeccccccCCHHHHhcCcCCCCCeEec--CCeEEeeHHHHHHHHHHHcC
Confidence 356888889999999999999999999988665 56689999999999999999999 49999999999999999985
No 122
>PRK10357 putative glutathione S-transferase; Provisional
Probab=98.79 E-value=1e-08 Score=91.88 Aligned_cols=75 Identities=19% Similarity=0.170 Sum_probs=62.8
Q ss_pred hhhhhhcCCCcchhhHhHHhhccCceEEEEcCCCCCChHHHHHHcCCCCccEEEcCCCCeeeecHHHHHHHHHHHhC
Q 019711 260 LEVWAYEGSPFCKVVREVLVELELPHLQRSCARGSPKRQILIEKAKHFQVPYLEDPNTGVQMFESADIVEYLRATYA 336 (337)
Q Consensus 260 L~l~~l~~sPf~~gvr~tLADl~L~~~l~~v~~g~pk~~e~~~~~p~~qVP~L~d~~~g~~l~ES~~I~~YL~~~y~ 336 (337)
+++|+...||+++.+++.|++++++|+.+.++... +..++.+.||.++||+|+++ +|..++||.+|++||+++|+
T Consensus 1 ~~Ly~~~~s~~~~~v~~~L~~~gv~ye~~~~~~~~-~~~~~~~~nP~g~vP~L~~~-~g~~l~eS~aI~~yL~~~~~ 75 (202)
T PRK10357 1 MKLIGSYTSPFVRKISILLLEKGITFEFVNELPYN-ADNGVAQYNPLGKVPALVTE-EGECWFDSPIIAEYIELLNV 75 (202)
T ss_pred CeeecCCCCchHHHHHHHHHHcCCCCeEEecCCCC-CchhhhhcCCccCCCeEEeC-CCCeeecHHHHHHHHHHhCC
Confidence 35777778999999999999999999998776432 34566778999999999843 47899999999999999875
No 123
>PLN02817 glutathione dehydrogenase (ascorbate)
Probab=98.79 E-value=1.4e-08 Score=96.02 Aligned_cols=71 Identities=21% Similarity=0.257 Sum_probs=62.7
Q ss_pred hhcCCCcchhhHhHHhhccCceEEEEcCCCCCChHHHHHHcCCCCccEEEcCCCCeeeecHHHHHHHHHHHhCC
Q 019711 264 AYEGSPFCKVVREVLVELELPHLQRSCARGSPKRQILIEKAKHFQVPYLEDPNTGVQMFESADIVEYLRATYAQ 337 (337)
Q Consensus 264 ~l~~sPf~~gvr~tLADl~L~~~l~~v~~g~pk~~e~~~~~p~~qVP~L~d~~~g~~l~ES~~I~~YL~~~y~~ 337 (337)
.+..||||+++++.|.+++++|+++.++... +.++|.++||.++||+|++ +|..++||.+|++||+++|+.
T Consensus 69 ~~g~cp~s~rV~i~L~ekgi~ye~~~vdl~~-~~~~fl~iNP~GkVPvL~~--d~~~L~ES~aI~~YL~e~~p~ 139 (265)
T PLN02817 69 KLGDCPFCQRVLLTLEEKHLPYDMKLVDLTN-KPEWFLKISPEGKVPVVKL--DEKWVADSDVITQALEEKYPD 139 (265)
T ss_pred cCCCCcHHHHHHHHHHHcCCCCEEEEeCcCc-CCHHHHhhCCCCCCCEEEE--CCEEEecHHHHHHHHHHHCCC
Confidence 4567999999999999999999999887653 5677999999999999998 456899999999999999973
No 124
>PRK10329 glutaredoxin-like protein; Provisional
Probab=98.77 E-value=2e-08 Score=78.31 Aligned_cols=59 Identities=19% Similarity=0.372 Sum_probs=47.3
Q ss_pred CceEEeecCCCcCHHHHHHHHHHcCCCeeEEEcCCCCCCChhHHHhhCCCCCcCeEEcCCCCe
Q 019711 139 KPIEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGV 201 (337)
Q Consensus 139 ~~l~LY~~~~cP~c~kVr~~L~elgl~ye~~~v~~~~~~~~~e~~~~np~~kVP~Lvd~~~g~ 201 (337)
|.++||..++||+|.+++.+|+++||+|+.++|+.. +....++ +.+|..+||+++. ++.
T Consensus 1 ~~v~lYt~~~Cp~C~~ak~~L~~~gI~~~~idi~~~-~~~~~~~-~~~g~~~vPvv~i--~~~ 59 (81)
T PRK10329 1 MRITIYTRNDCVQCHATKRAMESRGFDFEMINVDRV-PEAAETL-RAQGFRQLPVVIA--GDL 59 (81)
T ss_pred CEEEEEeCCCCHhHHHHHHHHHHCCCceEEEECCCC-HHHHHHH-HHcCCCCcCEEEE--CCE
Confidence 468999999999999999999999999999998532 2223334 4479999999987 454
No 125
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=98.76 E-value=2.2e-08 Score=76.77 Aligned_cols=74 Identities=12% Similarity=0.394 Sum_probs=62.9
Q ss_pred ceEEeecCCCcCHHHHHHHHHHcCCCeeEEEcCCCC--CCChhHHHhhCCCCCcCeEEcCCCCeeEecchhHHHHHhh
Q 019711 140 PIEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNG--PNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLVG 215 (337)
Q Consensus 140 ~l~LY~~~~cP~c~kVr~~L~elgl~ye~~~v~~~~--~~~~~e~~~~np~~kVP~Lvd~~~g~~l~ES~aIi~YL~~ 215 (337)
++++|...+||+|.+++.+|++++++|+.++++... ...+.++.++++..++|+++. +|..+.++++|+++..+
T Consensus 1 ~v~~y~~~~Cp~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v~~--~g~~igg~~~~~~~~~~ 76 (82)
T cd03419 1 PVVVFSKSYCPYCKRAKSLLKELGVKPAVVELDQHEDGSEIQDYLQELTGQRTVPNVFI--GGKFIGGCDDLMALHKS 76 (82)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHcCCCcEEEEEeCCCChHHHHHHHHHHhCCCCCCeEEE--CCEEEcCHHHHHHHHHc
Confidence 378999999999999999999999999999986332 223456778899999999987 78999999999998765
No 126
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=98.73 E-value=3e-08 Score=80.16 Aligned_cols=74 Identities=16% Similarity=0.321 Sum_probs=60.8
Q ss_pred CCceEEeecCCCcCHHHHHHHHHHcCCCeeEEEcCCCCC--CChhHHHhhCCCCCcCeEEcCCCCeeEecchhHHHHH
Q 019711 138 EKPIEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGP--NFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYL 213 (337)
Q Consensus 138 ~~~l~LY~~~~cP~c~kVr~~L~elgl~ye~~~v~~~~~--~~~~e~~~~np~~kVP~Lvd~~~g~~l~ES~aIi~YL 213 (337)
.+++++|..++||+|++++.+|+++|++|+.++|+...+ ....++.++++..+||.+.. +|..+...+++....
T Consensus 7 ~~~Vvvysk~~Cp~C~~ak~~L~~~~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vfi--~g~~iGG~ddl~~l~ 82 (99)
T TIGR02189 7 EKAVVIFSRSSCCMCHVVKRLLLTLGVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAVFV--GGKLVGGLENVMALH 82 (99)
T ss_pred cCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeEEE--CCEEEcCHHHHHHHH
Confidence 467999999999999999999999999999999963322 23345777889999999987 788888888777643
No 127
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=98.70 E-value=2.2e-08 Score=75.34 Aligned_cols=58 Identities=26% Similarity=0.346 Sum_probs=51.9
Q ss_pred CCCcchhhHhHHhhccCceEEEEcCCCCCChHHHHHHcCCCCccEEEcCCCCeeeecHHHHHHHHHHH
Q 019711 267 GSPFCKVVREVLVELELPHLQRSCARGSPKRQILIEKAKHFQVPYLEDPNTGVQMFESADIVEYLRAT 334 (337)
Q Consensus 267 ~sPf~~gvr~tLADl~L~~~l~~v~~g~pk~~e~~~~~p~~qVP~L~d~~~g~~l~ES~~I~~YL~~~ 334 (337)
.||||.+++..|.+++++|+.+.++... .+|.++||+|++ +|..++||.+|++||+++
T Consensus 15 ~sp~~~~v~~~L~~~~i~~~~~~~~~~~--------~~p~g~vP~l~~--~g~~l~es~~I~~yL~~~ 72 (72)
T cd03054 15 LSPECLKVETYLRMAGIPYEVVFSSNPW--------RSPTGKLPFLEL--NGEKIADSEKIIEYLKKK 72 (72)
T ss_pred CCHHHHHHHHHHHhCCCceEEEecCCcc--------cCCCcccCEEEE--CCEEEcCHHHHHHHHhhC
Confidence 6899999999999999999999887531 789999999998 588999999999999874
No 128
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=98.67 E-value=2.1e-08 Score=73.00 Aligned_cols=59 Identities=17% Similarity=0.417 Sum_probs=50.9
Q ss_pred eEEeecCCCcCHHHHHHHHHHcCCCeeEEEcCCCCCCChhHHHhhCCCCCcCeEEcCCCCee
Q 019711 141 IEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVS 202 (337)
Q Consensus 141 l~LY~~~~cP~c~kVr~~L~elgl~ye~~~v~~~~~~~~~e~~~~np~~kVP~Lvd~~~g~~ 202 (337)
++||..++||+|.+++.+|+++|++|+.++|+.. +..++++.+.++..++|+++. ||..
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~~i~y~~~dv~~~-~~~~~~l~~~~g~~~~P~v~i--~g~~ 59 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEKGIPYEEVDVDED-EEAREELKELSGVRTVPQVFI--DGKF 59 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTBEEEEEEGGGS-HHHHHHHHHHHSSSSSSEEEE--TTEE
T ss_pred cEEEEcCCCcCHHHHHHHHHHcCCeeeEcccccc-hhHHHHHHHHcCCCccCEEEE--CCEE
Confidence 5799999999999999999999999999999533 246778888889999999977 6754
No 129
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=98.66 E-value=9.7e-08 Score=76.90 Aligned_cols=74 Identities=18% Similarity=0.331 Sum_probs=61.2
Q ss_pred CCceEEeec-----CCCcCHHHHHHHHHHcCCCeeEEEcCCCCCCChhHHHhhCCCCCcCeEEcCCCCeeEecchhHHHH
Q 019711 138 EKPIEIYEY-----ESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKY 212 (337)
Q Consensus 138 ~~~l~LY~~-----~~cP~c~kVr~~L~elgl~ye~~~v~~~~~~~~~e~~~~np~~kVP~Lvd~~~g~~l~ES~aIi~Y 212 (337)
..++.||.. ++||||.+++.+|+++|++|+.++|..+ +..+.++.++++..+||.++. +|..+...+++...
T Consensus 11 ~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~~-~~~~~~l~~~tg~~tvP~vfi--~g~~iGG~ddl~~l 87 (97)
T TIGR00365 11 ENPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNVLED-PEIRQGIKEYSNWPTIPQLYV--KGEFVGGCDIIMEM 87 (97)
T ss_pred cCCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEECCCC-HHHHHHHHHHhCCCCCCEEEE--CCEEEeChHHHHHH
Confidence 356889976 7899999999999999999999998533 445677888999999999987 78888888877764
Q ss_pred Hh
Q 019711 213 LV 214 (337)
Q Consensus 213 L~ 214 (337)
..
T Consensus 88 ~~ 89 (97)
T TIGR00365 88 YQ 89 (97)
T ss_pred HH
Confidence 43
No 130
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=98.64 E-value=5.7e-08 Score=73.49 Aligned_cols=54 Identities=17% Similarity=0.266 Sum_probs=44.3
Q ss_pred eEEeecCCCcCHHHHHHHHHHcCCCeeEEEcCCCCCCChhHHHhhCCCCCcCeEEc
Q 019711 141 IEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVD 196 (337)
Q Consensus 141 l~LY~~~~cP~c~kVr~~L~elgl~ye~~~v~~~~~~~~~e~~~~np~~kVP~Lvd 196 (337)
++||..++||+|++++.+|+++|++|+.++|+.+. ....++. ..+...||+++.
T Consensus 1 v~ly~~~~Cp~C~~ak~~L~~~~i~~~~~di~~~~-~~~~~~~-~~g~~~vP~v~~ 54 (72)
T TIGR02194 1 ITVYSKNNCVQCKMTKKALEEHGIAFEEINIDEQP-EAIDYVK-AQGFRQVPVIVA 54 (72)
T ss_pred CEEEeCCCCHHHHHHHHHHHHCCCceEEEECCCCH-HHHHHHH-HcCCcccCEEEE
Confidence 57999999999999999999999999999985432 2344444 458889999976
No 131
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=98.61 E-value=1.1e-07 Score=73.03 Aligned_cols=73 Identities=16% Similarity=0.417 Sum_probs=60.5
Q ss_pred eEEeecCCCcCHHHHHHHHHHcCCC--eeEEEcCCC--CCCChhHHHhhCCCCCcCeEEcCCCCeeEecchhHHHHHhh
Q 019711 141 IEIYEYESCPFCRKVREIVAVLDLD--VLYYPCPRN--GPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLVG 215 (337)
Q Consensus 141 l~LY~~~~cP~c~kVr~~L~elgl~--ye~~~v~~~--~~~~~~e~~~~np~~kVP~Lvd~~~g~~l~ES~aIi~YL~~ 215 (337)
+++|..++||+|++++.+|++++++ |+.++|+.. ++..++++.+.++..+||.++. +|..+.++++++++..+
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~i--~g~~igg~~~~~~~~~~ 77 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLNVKPAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIFI--NGKFIGGCSDLLALYKS 77 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCCCCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEEE--CCEEEcCHHHHHHHHHc
Confidence 4789999999999999999999999 999988532 2223345677888899999987 78899999999988764
No 132
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=98.61 E-value=1.4e-07 Score=74.66 Aligned_cols=74 Identities=20% Similarity=0.316 Sum_probs=62.3
Q ss_pred CCceEEeec-----CCCcCHHHHHHHHHHcCCCeeEEEcCCCCCCChhHHHhhCCCCCcCeEEcCCCCeeEecchhHHHH
Q 019711 138 EKPIEIYEY-----ESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKY 212 (337)
Q Consensus 138 ~~~l~LY~~-----~~cP~c~kVr~~L~elgl~ye~~~v~~~~~~~~~e~~~~np~~kVP~Lvd~~~g~~l~ES~aIi~Y 212 (337)
.+++.+|.. ++||+|.+++.+|+++|++|+.++|..+ ...+.++.+.++..+||.++. +|..+...+++...
T Consensus 7 ~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~~-~~~~~~l~~~~g~~tvP~vfi--~g~~iGG~~~l~~l 83 (90)
T cd03028 7 ENPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILED-EEVRQGLKEYSNWPTFPQLYV--NGELVGGCDIVKEM 83 (90)
T ss_pred cCCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCCC-HHHHHHHHHHhCCCCCCEEEE--CCEEEeCHHHHHHH
Confidence 357889976 6999999999999999999999998543 446678889999999999987 78889888888775
Q ss_pred Hh
Q 019711 213 LV 214 (337)
Q Consensus 213 L~ 214 (337)
..
T Consensus 84 ~~ 85 (90)
T cd03028 84 HE 85 (90)
T ss_pred HH
Confidence 43
No 133
>PTZ00057 glutathione s-transferase; Provisional
Probab=98.61 E-value=6.1e-08 Score=87.55 Aligned_cols=75 Identities=17% Similarity=0.300 Sum_probs=60.5
Q ss_pred hhhhhhcCCCcchhhHhHHhhccCceEEEEcCCCCC---ChHHHH--HHcCCCCccEEEcCCCCeeeecHHHHHHHHHHH
Q 019711 260 LEVWAYEGSPFCKVVREVLVELELPHLQRSCARGSP---KRQILI--EKAKHFQVPYLEDPNTGVQMFESADIVEYLRAT 334 (337)
Q Consensus 260 L~l~~l~~sPf~~gvr~tLADl~L~~~l~~v~~g~p---k~~e~~--~~~p~~qVP~L~d~~~g~~l~ES~~I~~YL~~~ 334 (337)
+++|.+..++.+..+++.|++++++|+.+.++.... +.++|. ..||.++||+|++ +|..|+||.+|+.||+++
T Consensus 5 ~~L~y~~~~~~~~~vrl~L~~~gi~ye~~~~~~~~~~~~~~~~~~~~~~nP~g~vP~L~~--~~~~l~eS~AI~~YLa~~ 82 (205)
T PTZ00057 5 IVLYYFDARGKAELIRLIFAYLGIEYTDKRFGENGDAFIEFKNFKKEKDTPFEQVPILEM--DNIIFAQSQAIVRYLSKK 82 (205)
T ss_pred eEEEecCCCcchHHHHHHHHHcCCCeEEEeccccchHHHHHHhccccCCCCCCCCCEEEE--CCEEEecHHHHHHHHHHH
Confidence 677777778999999999999999999986642111 122223 3799999999999 578999999999999999
Q ss_pred hC
Q 019711 335 YA 336 (337)
Q Consensus 335 y~ 336 (337)
|+
T Consensus 83 ~~ 84 (205)
T PTZ00057 83 YK 84 (205)
T ss_pred cC
Confidence 85
No 134
>cd03078 GST_N_Metaxin1_like GST_N family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins including Tom37 from fungi. Mammalian metaxin (or metaxin 1) and the fungal protein Tom37 are components of preprotein import complexes of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals.
Probab=98.49 E-value=3.8e-07 Score=69.68 Aligned_cols=58 Identities=19% Similarity=0.334 Sum_probs=49.5
Q ss_pred CCcCHHHHHHHHHHcCCCeeEEEcCCCCCCChhHHHhhCCCCCcCeEEcCCCCeeEecchhHHHHHhhc
Q 019711 148 SCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLVGK 216 (337)
Q Consensus 148 ~cP~c~kVr~~L~elgl~ye~~~v~~~~~~~~~e~~~~np~~kVP~Lvd~~~g~~l~ES~aIi~YL~~~ 216 (337)
.+|+|.|+...|+..|++|+.+... +. ...|+||+|+|++ +|..+.+|..|++||.++
T Consensus 15 ~sp~clk~~~~Lr~~~~~~~v~~~~--n~-------~~sp~gkLP~l~~--~~~~i~d~~~Ii~~L~~~ 72 (73)
T cd03078 15 VDPECLAVLAYLKFAGAPLKVVPSN--NP-------WRSPTGKLPALLT--SGTKISGPEKIIEYLRKQ 72 (73)
T ss_pred CCHHHHHHHHHHHcCCCCEEEEecC--CC-------CCCCCCccCEEEE--CCEEecChHHHHHHHHHc
Confidence 4799999999999999999987531 11 3468999999998 799999999999999875
No 135
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=98.46 E-value=4.3e-07 Score=70.01 Aligned_cols=75 Identities=20% Similarity=0.269 Sum_probs=65.3
Q ss_pred CCCCchhhhhhcCCCcchhhHhHHhhccCceEEEEcCCCCCChHHHHHHcCCCCccEEEcCCCCeeeecHHHHHHHHH
Q 019711 255 LPPKPLEVWAYEGSPFCKVVREVLVELELPHLQRSCARGSPKRQILIEKAKHFQVPYLEDPNTGVQMFESADIVEYLR 332 (337)
Q Consensus 255 ~~~k~L~l~~l~~sPf~~gvr~tLADl~L~~~l~~v~~g~pk~~e~~~~~p~~qVP~L~d~~~g~~l~ES~~I~~YL~ 332 (337)
.....+++|...+||||..++..|.+.++.|+.++++.. ....++.++++..+||++.. +|..+.++.+|.+||+
T Consensus 5 ~~~~~V~ly~~~~Cp~C~~ak~~L~~~gi~y~~idi~~~-~~~~~~~~~~g~~~vP~i~i--~g~~igG~~~l~~~l~ 79 (79)
T TIGR02190 5 RKPESVVVFTKPGCPFCAKAKATLKEKGYDFEEIPLGND-ARGRSLRAVTGATTVPQVFI--GGKLIGGSDELEAYLA 79 (79)
T ss_pred CCCCCEEEEECCCCHhHHHHHHHHHHcCCCcEEEECCCC-hHHHHHHHHHCCCCcCeEEE--CCEEEcCHHHHHHHhC
Confidence 345678899999999999999999999999999999765 34567888889999999988 5788999999999984
No 136
>cd03079 GST_N_Metaxin2 GST_N family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=98.46 E-value=4e-07 Score=69.91 Aligned_cols=61 Identities=21% Similarity=0.258 Sum_probs=49.7
Q ss_pred hcCCCcchhhHhHHhhccCceEEEEcCCCCCChHHHHHHcCCCCccEEEcCCCCeeeecHHHHHHHHHHH
Q 019711 265 YEGSPFCKVVREVLVELELPHLQRSCARGSPKRQILIEKAKHFQVPYLEDPNTGVQMFESADIVEYLRAT 334 (337)
Q Consensus 265 l~~sPf~~gvr~tLADl~L~~~l~~v~~g~pk~~e~~~~~p~~qVP~L~d~~~g~~l~ES~~I~~YL~~~ 334 (337)
+..+++|.++++.|.+++++|+.+....++ ..+|.++||+|++ +|..+.||.+|+.||+++
T Consensus 14 ~~~~~~~~kv~~~L~elglpye~~~~~~~~-------~~~P~GkVP~L~~--dg~vI~eS~aIl~yL~~~ 74 (74)
T cd03079 14 LPDNASCLAVQTFLKMCNLPFNVRCRANAE-------FMSPSGKVPFIRV--GNQIVSEFGPIVQFVEAK 74 (74)
T ss_pred cCCCCCHHHHHHHHHHcCCCcEEEecCCcc-------ccCCCCcccEEEE--CCEEEeCHHHHHHHHhcC
Confidence 346899999999999999999988543211 1456699999999 578999999999999864
No 137
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=98.29 E-value=1.8e-06 Score=65.06 Aligned_cols=71 Identities=18% Similarity=0.280 Sum_probs=61.7
Q ss_pred chhhhhhcCCCcchhhHhHHhhccCceEEEEcCCCCCChHHHHHHcCCCCccEEEcCCCCeeeecHHHHHHHHH
Q 019711 259 PLEVWAYEGSPFCKVVREVLVELELPHLQRSCARGSPKRQILIEKAKHFQVPYLEDPNTGVQMFESADIVEYLR 332 (337)
Q Consensus 259 ~L~l~~l~~sPf~~gvr~tLADl~L~~~l~~v~~g~pk~~e~~~~~p~~qVP~L~d~~~g~~l~ES~~I~~YL~ 332 (337)
.+++|...+||||..++..|.+.++.|+.++++... ...++.+..+..+||.+.. +|..+.++.+|.+||+
T Consensus 2 ~v~lys~~~Cp~C~~ak~~L~~~~i~~~~~~v~~~~-~~~~~~~~~g~~~vP~ifi--~g~~igg~~~l~~~l~ 72 (72)
T cd03029 2 SVSLFTKPGCPFCARAKAALQENGISYEEIPLGKDI-TGRSLRAVTGAMTVPQVFI--DGELIGGSDDLEKYFA 72 (72)
T ss_pred eEEEEECCCCHHHHHHHHHHHHcCCCcEEEECCCCh-hHHHHHHHhCCCCcCeEEE--CCEEEeCHHHHHHHhC
Confidence 467888899999999999999999999999998654 5566777788899999987 4778999999999984
No 138
>COG2999 GrxB Glutaredoxin 2 [Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=7.3e-07 Score=78.68 Aligned_cols=74 Identities=26% Similarity=0.392 Sum_probs=63.0
Q ss_pred hhhhhhcCCCcchhhHhHHhhccCceEEEEcCCCCCChHHHHHHcCCCCccEEEcCCCCeeeecHHHHHHHHHHHhC
Q 019711 260 LEVWAYEGSPFCKVVREVLVELELPHLQRSCARGSPKRQILIEKAKHFQVPYLEDPNTGVQMFESADIVEYLRATYA 336 (337)
Q Consensus 260 L~l~~l~~sPf~~gvr~tLADl~L~~~l~~v~~g~pk~~e~~~~~p~~qVP~L~d~~~g~~l~ES~~I~~YL~~~y~ 336 (337)
+++|.|..||||+++|+..--++|++++..+..++... =..+.|..|||.|+.. +|..|.||-+|+.|+.+.++
T Consensus 1 MkLYIYdHCPfcvrarmi~Gl~nipve~~vL~nDDe~T--p~rmiG~KqVPiL~Ke-dg~~m~ESlDIV~y~d~~~~ 74 (215)
T COG2999 1 MKLYIYDHCPFCVRARMIFGLKNIPVELHVLLNDDEET--PIRMIGQKQVPILQKE-DGRAMPESLDIVHYVDELDG 74 (215)
T ss_pred CceeEeccChHHHHHHHHhhccCCChhhheeccCcccC--hhhhhcccccceEEcc-ccccchhhhHHHHHHHHhcC
Confidence 46888999999999999999999999988877654332 2567788999999864 58999999999999999886
No 139
>PRK10824 glutaredoxin-4; Provisional
Probab=98.24 E-value=3.6e-06 Score=70.02 Aligned_cols=74 Identities=22% Similarity=0.345 Sum_probs=61.8
Q ss_pred CCceEEeec-----CCCcCHHHHHHHHHHcCCCeeEEEcCCCCCCChhHHHhhCCCCCcCeEEcCCCCeeEecchhHHHH
Q 019711 138 EKPIEIYEY-----ESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKY 212 (337)
Q Consensus 138 ~~~l~LY~~-----~~cP~c~kVr~~L~elgl~ye~~~v~~~~~~~~~e~~~~np~~kVP~Lvd~~~g~~l~ES~aIi~Y 212 (337)
..++.+|.. +.||||++++.+|..+|++|..++++.. +..+.++.+.++..+||-+.. +|..+..++++...
T Consensus 14 ~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~~~~idi~~d-~~~~~~l~~~sg~~TVPQIFI--~G~~IGG~ddl~~l 90 (115)
T PRK10824 14 ENPILLYMKGSPKLPSCGFSAQAVQALSACGERFAYVDILQN-PDIRAELPKYANWPTFPQLWV--DGELVGGCDIVIEM 90 (115)
T ss_pred cCCEEEEECCCCCCCCCchHHHHHHHHHHcCCCceEEEecCC-HHHHHHHHHHhCCCCCCeEEE--CCEEEcChHHHHHH
Confidence 356888987 4899999999999999999999998543 345677889999999999977 89999998888875
Q ss_pred Hh
Q 019711 213 LV 214 (337)
Q Consensus 213 L~ 214 (337)
..
T Consensus 91 ~~ 92 (115)
T PRK10824 91 YQ 92 (115)
T ss_pred HH
Confidence 44
No 140
>KOG4420 consensus Uncharacterized conserved protein (Ganglioside-induced differentiation associated protein 1, GDAP1) [Function unknown]
Probab=98.15 E-value=1.8e-06 Score=80.25 Aligned_cols=77 Identities=18% Similarity=0.223 Sum_probs=69.1
Q ss_pred CchhhhhhcCCCcchhhHhHHhhccCceEEEEcC--CCCCChHHHHHHcCCCCccEEEcCCCCeeeecHHHHHHHHHHHh
Q 019711 258 KPLEVWAYEGSPFCKVVREVLVELELPHLQRSCA--RGSPKRQILIEKAKHFQVPYLEDPNTGVQMFESADIVEYLRATY 335 (337)
Q Consensus 258 k~L~l~~l~~sPf~~gvr~tLADl~L~~~l~~v~--~g~pk~~e~~~~~p~~qVP~L~d~~~g~~l~ES~~I~~YL~~~y 335 (337)
..+.+|+...|--+.++++.++|.+|.|+-+.|+ .++++.++|+..||.+.||+|++ +...+.|+..|++|++++|
T Consensus 25 e~~vLyhhpysf~sQkVrlvi~EK~id~~~y~V~l~~geh~epwFmrlNp~gevPVl~~--g~~II~d~tqIIdYvErtf 102 (325)
T KOG4420|consen 25 ESLVLYHHPYSFSSQKVRLVIAEKGIDCEEYDVSLPQGEHKEPWFMRLNPGGEVPVLIH--GDNIISDYTQIIDYVERTF 102 (325)
T ss_pred hcceeeecCcccccceeeeehhhcccccceeeccCccccccCchheecCCCCCCceEec--CCeecccHHHHHHHHHHhh
Confidence 4488888888888899999999999999998887 57788999999999999999999 6678999999999999987
Q ss_pred C
Q 019711 336 A 336 (337)
Q Consensus 336 ~ 336 (337)
.
T Consensus 103 ~ 103 (325)
T KOG4420|consen 103 T 103 (325)
T ss_pred c
Confidence 5
No 141
>PRK10638 glutaredoxin 3; Provisional
Probab=98.11 E-value=5.8e-06 Score=64.16 Aligned_cols=72 Identities=15% Similarity=0.259 Sum_probs=61.9
Q ss_pred chhhhhhcCCCcchhhHhHHhhccCceEEEEcCCCCCChHHHHHHcCCCCccEEEcCCCCeeeecHHHHHHHHH
Q 019711 259 PLEVWAYEGSPFCKVVREVLVELELPHLQRSCARGSPKRQILIEKAKHFQVPYLEDPNTGVQMFESADIVEYLR 332 (337)
Q Consensus 259 ~L~l~~l~~sPf~~gvr~tLADl~L~~~l~~v~~g~pk~~e~~~~~p~~qVP~L~d~~~g~~l~ES~~I~~YL~ 332 (337)
.+++|....||||..++..|.+.+++|+.++++.+....+++.+.+|..+||++.. +|..+....++.++-+
T Consensus 3 ~v~ly~~~~Cp~C~~a~~~L~~~gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i~~--~g~~igG~~~~~~~~~ 74 (83)
T PRK10638 3 NVEIYTKATCPFCHRAKALLNSKGVSFQEIPIDGDAAKREEMIKRSGRTTVPQIFI--DAQHIGGCDDLYALDA 74 (83)
T ss_pred cEEEEECCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHhCCCCcCEEEE--CCEEEeCHHHHHHHHH
Confidence 46788889999999999999999999999999876556788889999999999987 4778888888877643
No 142
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=97.96 E-value=2.3e-05 Score=78.70 Aligned_cols=70 Identities=17% Similarity=0.323 Sum_probs=55.3
Q ss_pred CCceEEeecCCCcCHHHHHHHHHHcCCCeeEEEcCCCCCCChhHHH-h--------hCCCCCcCeEEcCCCCeeEecchh
Q 019711 138 EKPIEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVL-Q--------MGGKKQFPYMVDPNTGVSMYESDN 208 (337)
Q Consensus 138 ~~~l~LY~~~~cP~c~kVr~~L~elgl~ye~~~v~~~~~~~~~e~~-~--------~np~~kVP~Lvd~~~g~~l~ES~a 208 (337)
|+.+++|..++||+|.+++.+|+..||+|+.++|++. +. ..++. + ..+..+||.++. +|..+..-++
T Consensus 1 m~~V~vys~~~Cp~C~~aK~~L~~~gi~~~~idi~~~-~~-~~~~~~~~~~~~~~~~~g~~tvP~ifi--~~~~igGf~~ 76 (410)
T PRK12759 1 MVEVRIYTKTNCPFCDLAKSWFGANDIPFTQISLDDD-VK-RAEFYAEVNKNILLVEEHIRTVPQIFV--GDVHIGGYDN 76 (410)
T ss_pred CCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCC-hh-HHHHHHHHhhccccccCCCCccCeEEE--CCEEEeCchH
Confidence 4569999999999999999999999999999999632 22 22322 2 357889999987 7888888877
Q ss_pred HHH
Q 019711 209 IIK 211 (337)
Q Consensus 209 Ii~ 211 (337)
+..
T Consensus 77 l~~ 79 (410)
T PRK12759 77 LMA 79 (410)
T ss_pred HHH
Confidence 766
No 143
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=97.96 E-value=2.7e-05 Score=67.55 Aligned_cols=70 Identities=14% Similarity=0.298 Sum_probs=58.2
Q ss_pred eEEeecC------CCcCHHHHHHHHHHcCCCeeEEEcCCCCCCChhHHHhhCCC----CCcCeEEcCCCCeeEecchhHH
Q 019711 141 IEIYEYE------SCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGK----KQFPYMVDPNTGVSMYESDNII 210 (337)
Q Consensus 141 l~LY~~~------~cP~c~kVr~~L~elgl~ye~~~v~~~~~~~~~e~~~~np~----~kVP~Lvd~~~g~~l~ES~aIi 210 (337)
++||... .||+|.+|+.+|+.++|+|+.++|+.+ ..+++|+.++.+. .+||.+.. +|..|...+++.
T Consensus 2 VvlYttsl~giR~t~~~C~~ak~iL~~~~V~~~e~DVs~~-~~~~~EL~~~~g~~~~~~tvPqVFI--~G~~IGG~del~ 78 (147)
T cd03031 2 VVLYTTSLRGVRKTFEDCNNVRAILESFRVKFDERDVSMD-SGFREELRELLGAELKAVSLPRVFV--DGRYLGGAEEVL 78 (147)
T ss_pred EEEEEcCCcCCCCcChhHHHHHHHHHHCCCcEEEEECCCC-HHHHHHHHHHhCCCCCCCCCCEEEE--CCEEEecHHHHH
Confidence 6899998 899999999999999999999998543 3457788877665 79999977 788888888777
Q ss_pred HHH
Q 019711 211 KYL 213 (337)
Q Consensus 211 ~YL 213 (337)
+.-
T Consensus 79 ~L~ 81 (147)
T cd03031 79 RLN 81 (147)
T ss_pred HHH
Confidence 643
No 144
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=97.95 E-value=3.2e-05 Score=63.20 Aligned_cols=75 Identities=17% Similarity=0.463 Sum_probs=62.9
Q ss_pred CCceEEeecCCCcCHHHHHHHHHHcCCCeeEEEcCC--CCCCChhHHHhhCCCCCcCeEEcCCCCeeEecchhHHHHHh
Q 019711 138 EKPIEIYEYESCPFCRKVREIVAVLDLDVLYYPCPR--NGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLV 214 (337)
Q Consensus 138 ~~~l~LY~~~~cP~c~kVr~~L~elgl~ye~~~v~~--~~~~~~~e~~~~np~~kVP~Lvd~~~g~~l~ES~aIi~YL~ 214 (337)
..++.+|...+||+|.+++.+|..+++.+..+++|. .+.+....+.++.+..+||.+.. +|..+...++++.+-.
T Consensus 13 ~~~VVifSKs~C~~c~~~k~ll~~~~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI--~Gk~iGG~~dl~~lh~ 89 (104)
T KOG1752|consen 13 ENPVVIFSKSSCPYCHRAKELLSDLGVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFI--GGKFIGGASDLMALHK 89 (104)
T ss_pred cCCEEEEECCcCchHHHHHHHHHhCCCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEE--CCEEEcCHHHHHHHHH
Confidence 456889999999999999999999999999999973 33345556678899999999987 8988988888887643
No 145
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=97.94 E-value=2.5e-05 Score=61.24 Aligned_cols=75 Identities=11% Similarity=0.194 Sum_probs=61.4
Q ss_pred hhhhhhcCCCcchhhHhHHhhcc-----CceEEEEcCCCCCChHHHHHHcCC--CCccEEEcCCCCeeeecHHHHHHHHH
Q 019711 260 LEVWAYEGSPFCKVVREVLVELE-----LPHLQRSCARGSPKRQILIEKAKH--FQVPYLEDPNTGVQMFESADIVEYLR 332 (337)
Q Consensus 260 L~l~~l~~sPf~~gvr~tLADl~-----L~~~l~~v~~g~pk~~e~~~~~p~--~qVP~L~d~~~g~~l~ES~~I~~YL~ 332 (337)
+++|+..+||||..++..|.++. +.|+.+++.......+++.++.+. .+||++.. +|..+.++.+|.+|+.
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~ifi--~g~~igG~~dl~~~~~ 79 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERADFEFRYIDIHAEGISKADLEKTVGKPVETVPQIFV--DEKHVGGCTDFEQLVK 79 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCCCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEEE--CCEEecCHHHHHHHHH
Confidence 45778889999999999999984 568888887544346678888775 68999977 4788999999999999
Q ss_pred HHhC
Q 019711 333 ATYA 336 (337)
Q Consensus 333 ~~y~ 336 (337)
++|+
T Consensus 80 ~~~~ 83 (86)
T TIGR02183 80 ENFD 83 (86)
T ss_pred hccc
Confidence 9875
No 146
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=97.94 E-value=1.8e-05 Score=58.26 Aligned_cols=71 Identities=17% Similarity=0.260 Sum_probs=59.8
Q ss_pred hhhhhhcCCCcchhhHhHHhhccCceEEEEcCCCCCChHHHHHHcCCCCccEEEcCCCCeee--ecHHHHHHHHH
Q 019711 260 LEVWAYEGSPFCKVVREVLVELELPHLQRSCARGSPKRQILIEKAKHFQVPYLEDPNTGVQM--FESADIVEYLR 332 (337)
Q Consensus 260 L~l~~l~~sPf~~gvr~tLADl~L~~~l~~v~~g~pk~~e~~~~~p~~qVP~L~d~~~g~~l--~ES~~I~~YL~ 332 (337)
+++|+...||+|...+..|.+.++.|..++++......+++.++++..+||+++.. |..+ ++..+|.+||+
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~~~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~--~~~~~g~~~~~i~~~i~ 74 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTSKGIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIG--HKIIVGFDPEKLDQLLE 74 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHHCCCeEEEEeccCCHHHHHHHHHHhCCCcccEEEEC--CEEEeeCCHHHHHHHhC
Confidence 56788889999999999999999999999988766667788899999999999984 5445 88888888763
No 147
>PTZ00062 glutaredoxin; Provisional
Probab=97.94 E-value=2.6e-05 Score=71.18 Aligned_cols=73 Identities=15% Similarity=0.239 Sum_probs=60.3
Q ss_pred CCceEEeec-----CCCcCHHHHHHHHHHcCCCeeEEEcCCCCCCChhHHHhhCCCCCcCeEEcCCCCeeEecchhHHHH
Q 019711 138 EKPIEIYEY-----ESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKY 212 (337)
Q Consensus 138 ~~~l~LY~~-----~~cP~c~kVr~~L~elgl~ye~~~v~~~~~~~~~e~~~~np~~kVP~Lvd~~~g~~l~ES~aIi~Y 212 (337)
..++.||.. +.||||++++.+|+++|++|+.++|..+ +..+.++.+.++..+||.+.. +|..|...+.+...
T Consensus 112 ~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~~i~y~~~DI~~d-~~~~~~l~~~sg~~TvPqVfI--~G~~IGG~d~l~~l 188 (204)
T PTZ00062 112 NHKILLFMKGSKTFPFCRFSNAVVNMLNSSGVKYETYNIFED-PDLREELKVYSNWPTYPQLYV--NGELIGGHDIIKEL 188 (204)
T ss_pred cCCEEEEEccCCCCCCChhHHHHHHHHHHcCCCEEEEEcCCC-HHHHHHHHHHhCCCCCCeEEE--CCEEEcChHHHHHH
Confidence 456889977 5899999999999999999999998633 445777889999999999977 78888887777663
Q ss_pred H
Q 019711 213 L 213 (337)
Q Consensus 213 L 213 (337)
.
T Consensus 189 ~ 189 (204)
T PTZ00062 189 Y 189 (204)
T ss_pred H
Confidence 3
No 148
>KOG4244 consensus Failed axon connections (fax) protein/glutathione S-transferase-like protein [Signal transduction mechanisms]
Probab=97.91 E-value=3.1e-05 Score=72.41 Aligned_cols=79 Identities=18% Similarity=0.353 Sum_probs=65.8
Q ss_pred CCCCCceEEeecCC-------CcCHHHHHHHHHHcCCCeeEEEcCCCCCCChhHHHhhCCCCCcCeEEcCCCCeeEecch
Q 019711 135 PRPEKPIEIYEYES-------CPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESD 207 (337)
Q Consensus 135 ~~~~~~l~LY~~~~-------cP~c~kVr~~L~elgl~ye~~~v~~~~~~~~~e~~~~np~~kVP~Lvd~~~g~~l~ES~ 207 (337)
+-.+..+-||+|+. ||||.||..+|...+|+||.+++ .+...+.+|++|.+.- +|..+.+|+
T Consensus 40 d~kkD~VYLyQF~R~~~~PnLSPfClKvEt~lR~~~IpYE~~~~---------~~~~rSr~G~lPFIEL--NGe~iaDS~ 108 (281)
T KOG4244|consen 40 DYKKDTVYLYQFPRTKTCPNLSPFCLKVETFLRAYDIPYEIVDC---------SLKRRSRNGTLPFIEL--NGEHIADSD 108 (281)
T ss_pred ccccCeEEEEeccccCCCCCCChHHHHHHHHHHHhCCCceeccc---------cceeeccCCCcceEEe--CCeeccccH
Confidence 34456689999984 89999999999999999999886 2335678899999987 899999999
Q ss_pred hHHHHHhhccCCCC-cch
Q 019711 208 NIIKYLVGKYGDGS-VPF 224 (337)
Q Consensus 208 aIi~YL~~~y~~~~-~P~ 224 (337)
-|+.+|.++|+-.. ++.
T Consensus 109 ~I~~~L~~hf~~~~~L~~ 126 (281)
T KOG4244|consen 109 LIEDRLRKHFKIPDDLSA 126 (281)
T ss_pred HHHHHHHHHcCCCCCCCH
Confidence 99999999998543 443
No 149
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=97.85 E-value=4.6e-05 Score=59.24 Aligned_cols=75 Identities=12% Similarity=0.181 Sum_probs=63.4
Q ss_pred hhhhhhcCCCcchhhHhHHhh-----ccCceEEEEcCCCCCChHHHHHHcCC--CCccEEEcCCCCeeeecHHHHHHHHH
Q 019711 260 LEVWAYEGSPFCKVVREVLVE-----LELPHLQRSCARGSPKRQILIEKAKH--FQVPYLEDPNTGVQMFESADIVEYLR 332 (337)
Q Consensus 260 L~l~~l~~sPf~~gvr~tLAD-----l~L~~~l~~v~~g~pk~~e~~~~~p~--~qVP~L~d~~~g~~l~ES~~I~~YL~ 332 (337)
+++|...+||||..++-.|.+ .+++|+.+++.......+++.+..+. .+||++.. +|..+....+|.+|+.
T Consensus 3 v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~ifi--~g~~igg~~~~~~~~~ 80 (85)
T PRK11200 3 VVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEGISKADLEKTVGKPVETVPQIFV--DQKHIGGCTDFEAYVK 80 (85)
T ss_pred EEEEeCCCChhHHHHHHHHHhhcccccCCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEEE--CCEEEcCHHHHHHHHH
Confidence 567888899999999999999 68999999998665456677776664 68999977 5888999999999999
Q ss_pred HHhC
Q 019711 333 ATYA 336 (337)
Q Consensus 333 ~~y~ 336 (337)
++|+
T Consensus 81 ~~~~ 84 (85)
T PRK11200 81 ENLG 84 (85)
T ss_pred Hhcc
Confidence 9986
No 150
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=97.81 E-value=4.4e-05 Score=55.77 Aligned_cols=69 Identities=19% Similarity=0.223 Sum_probs=59.1
Q ss_pred hhhhhhcCCCcchhhHhHHhhccCceEEEEcCCCCCChHHHHHHcCCCCccEEEcCCCCeeeecHHHHHHH
Q 019711 260 LEVWAYEGSPFCKVVREVLVELELPHLQRSCARGSPKRQILIEKAKHFQVPYLEDPNTGVQMFESADIVEY 330 (337)
Q Consensus 260 L~l~~l~~sPf~~gvr~tLADl~L~~~l~~v~~g~pk~~e~~~~~p~~qVP~L~d~~~g~~l~ES~~I~~Y 330 (337)
+.+|....||+|..++..|.++++.|..+++.......+++.++++..++|++.. +|..+.++..|.+.
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~i~~~~~di~~~~~~~~~l~~~~~~~~~P~~~~--~~~~igg~~~~~~~ 70 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLGIEFEEIDILEDGELREELKELSGWPTVPQIFI--NGEFIGGYDDLKAL 70 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCcEEEEECCCCHHHHHHHHHHhCCCCcCEEEE--CCEEEecHHHHHHh
Confidence 4577788999999999999999999999999876656677788899999999988 57888998888764
No 151
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=97.78 E-value=4.9e-05 Score=57.12 Aligned_cols=71 Identities=15% Similarity=0.241 Sum_probs=59.9
Q ss_pred hhhhhhcCCCcchhhHhHHhhccCceEEEEcCCCCCChHHHHHHcCCC-CccEEEcCCCCeeeecHHHHHHHHH
Q 019711 260 LEVWAYEGSPFCKVVREVLVELELPHLQRSCARGSPKRQILIEKAKHF-QVPYLEDPNTGVQMFESADIVEYLR 332 (337)
Q Consensus 260 L~l~~l~~sPf~~gvr~tLADl~L~~~l~~v~~g~pk~~e~~~~~p~~-qVP~L~d~~~g~~l~ES~~I~~YL~ 332 (337)
+++|....||||..++..|.+.+++|+.+++.......+++.++.+.. +||++.. +|..+....++.++-+
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~i--~g~~igg~~~~~~~~~ 73 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKKGVDYEEIDVDGDPALREEMINRSGGRRTVPQIFI--GDVHIGGCDDLYALER 73 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCccCEEEE--CCEEEeChHHHHHHHh
Confidence 567888899999999999999999999999987655667777887766 8999987 4778888888887744
No 152
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=97.78 E-value=5.3e-05 Score=57.11 Aligned_cols=69 Identities=19% Similarity=0.164 Sum_probs=57.9
Q ss_pred chhhhhhcCCCcchhhHhHHhhccCceEEEEcCCCCCChHHHHHHcCCCCccEEEcCCCCeeeecHHHHHH
Q 019711 259 PLEVWAYEGSPFCKVVREVLVELELPHLQRSCARGSPKRQILIEKAKHFQVPYLEDPNTGVQMFESADIVE 329 (337)
Q Consensus 259 ~L~l~~l~~sPf~~gvr~tLADl~L~~~l~~v~~g~pk~~e~~~~~p~~qVP~L~d~~~g~~l~ES~~I~~ 329 (337)
.+++|+...||||..++..|.+.+++|+.+++.......+++.++++..++|++.. +|..+..-.++.+
T Consensus 2 ~v~ly~~~~C~~C~ka~~~L~~~gi~~~~~di~~~~~~~~el~~~~g~~~vP~v~i--~~~~iGg~~~~~~ 70 (73)
T cd03027 2 RVTIYSRLGCEDCTAVRLFLREKGLPYVEINIDIFPERKAELEERTGSSVVPQIFF--NEKLVGGLTDLKS 70 (73)
T ss_pred EEEEEecCCChhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHHhCCCCcCEEEE--CCEEEeCHHHHHh
Confidence 36788889999999999999999999999999987777888999999999999987 3555655555443
No 153
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=97.77 E-value=0.0001 Score=54.25 Aligned_cols=59 Identities=17% Similarity=0.378 Sum_probs=45.4
Q ss_pred ceEEeecCCCcCHHHHHHHHHHc-----CCCeeEEEcCCCCCCChhHHHhhCCCCCcCeEEcCCCCeeEec
Q 019711 140 PIEIYEYESCPFCRKVREIVAVL-----DLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYE 205 (337)
Q Consensus 140 ~l~LY~~~~cP~c~kVr~~L~el-----gl~ye~~~v~~~~~~~~~e~~~~np~~kVP~Lvd~~~g~~l~E 205 (337)
.+++|..++||+|.+++.+|+++ ++++..++++. .+++.+..+...+|+++. +|..++.
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~id~~~-----~~~l~~~~~i~~vPti~i--~~~~~~~ 65 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNPNISAEMIDAAE-----FPDLADEYGVMSVPAIVI--NGKVEFV 65 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCceEEEEEEccc-----CHhHHHHcCCcccCEEEE--CCEEEEe
Confidence 47899999999999999999987 56666666532 235677788889999977 6766654
No 154
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=97.74 E-value=6.6e-05 Score=58.31 Aligned_cols=72 Identities=14% Similarity=0.265 Sum_probs=55.9
Q ss_pred chhhhhhcCCCcchhhHhHHhhccCceEEEEcCCCCC-ChHHHHHHc-CCCCccEEEcCCCCeeeecHHHHHHHHH
Q 019711 259 PLEVWAYEGSPFCKVVREVLVELELPHLQRSCARGSP-KRQILIEKA-KHFQVPYLEDPNTGVQMFESADIVEYLR 332 (337)
Q Consensus 259 ~L~l~~l~~sPf~~gvr~tLADl~L~~~l~~v~~g~p-k~~e~~~~~-p~~qVP~L~d~~~g~~l~ES~~I~~YL~ 332 (337)
.+++|...+||||...+-.|.+.++.|+.+++...++ ..+++.+.. |..+||++..+ |..++.+..+-++..
T Consensus 2 ~v~iyt~~~CPyC~~ak~~L~~~g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i~--~~~igg~~d~~~~~~ 75 (80)
T COG0695 2 NVTIYTKPGCPYCKRAKRLLDRKGVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFIG--GKHVGGCDDLDALEA 75 (80)
T ss_pred CEEEEECCCCchHHHHHHHHHHcCCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEEC--CEEEeCcccHHHHHh
Confidence 3567888899999999999999999999999987763 566777666 89999999883 445554444444433
No 155
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=97.73 E-value=4.2e-05 Score=56.24 Aligned_cols=69 Identities=16% Similarity=0.247 Sum_probs=53.5
Q ss_pred hhhhhhcCCCcchhhHhHHhhccCceEEEEcCCCCCChHHHHHHcCCCCccEEEcCCCCeeeecHHHHH
Q 019711 260 LEVWAYEGSPFCKVVREVLVELELPHLQRSCARGSPKRQILIEKAKHFQVPYLEDPNTGVQMFESADIV 328 (337)
Q Consensus 260 L~l~~l~~sPf~~gvr~tLADl~L~~~l~~v~~g~pk~~e~~~~~p~~qVP~L~d~~~g~~l~ES~~I~ 328 (337)
+++|+...||+|...+..|.+.++.|....++.+....+++.+.++..+||+|++++.-..-++...|.
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~~~~~i~g~~~~~l~ 70 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDERGIPFEEVDVDEDPEALEELKKLNGYRSVPVVVIGDEHLSGFRPDKLR 70 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHHCCCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEECCEEEecCCHHHHH
Confidence 467788889999999999999999999999987655567788888999999999854323344444443
No 156
>PRK10329 glutaredoxin-like protein; Provisional
Probab=97.72 E-value=7e-05 Score=58.27 Aligned_cols=74 Identities=9% Similarity=0.092 Sum_probs=59.3
Q ss_pred chhhhhhcCCCcchhhHhHHhhccCceEEEEcCCCCCChHHHHHHcCCCCccEEEcCCCCeeeecHHHHHHHHHH
Q 019711 259 PLEVWAYEGSPFCKVVREVLVELELPHLQRSCARGSPKRQILIEKAKHFQVPYLEDPNTGVQMFESADIVEYLRA 333 (337)
Q Consensus 259 ~L~l~~l~~sPf~~gvr~tLADl~L~~~l~~v~~g~pk~~e~~~~~p~~qVP~L~d~~~g~~l~ES~~I~~YL~~ 333 (337)
.+++|...+||||..++..|.+.+++|+.++++... ...+.+..+|..+||+++.++.-...|+...|-+....
T Consensus 2 ~v~lYt~~~Cp~C~~ak~~L~~~gI~~~~idi~~~~-~~~~~~~~~g~~~vPvv~i~~~~~~Gf~~~~l~~~~~~ 75 (81)
T PRK10329 2 RITIYTRNDCVQCHATKRAMESRGFDFEMINVDRVP-EAAETLRAQGFRQLPVVIAGDLSWSGFRPDMINRLHPA 75 (81)
T ss_pred EEEEEeCCCCHhHHHHHHHHHHCCCceEEEECCCCH-HHHHHHHHcCCCCcCEEEECCEEEecCCHHHHHHHHHh
Confidence 357888899999999999999999999999998654 33334455688899999886655668888888877654
No 157
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=97.69 E-value=3.5e-05 Score=63.40 Aligned_cols=51 Identities=20% Similarity=0.372 Sum_probs=39.9
Q ss_pred eEEeecCCCcCHHHHHHHHHHcCCCeeEEEcCCCCCCChhHHHhhCCCCCcC
Q 019711 141 IEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFP 192 (337)
Q Consensus 141 l~LY~~~~cP~c~kVr~~L~elgl~ye~~~v~~~~~~~~~e~~~~np~~kVP 192 (337)
++||+.++||+|++++.+|++.|++|+.+++.... ....++.++.....+|
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~~~-~~~~el~~~~~~~~~~ 51 (111)
T cd03036 1 LKFYEYPKCSTCRKAKKWLDEHGVDYTAIDIVEEP-PSKEELKKWLEKSGLP 51 (111)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCceEEecccCCc-ccHHHHHHHHHHcCCC
Confidence 58999999999999999999999999999985433 3455666655544444
No 158
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=97.62 E-value=9.2e-05 Score=55.45 Aligned_cols=73 Identities=12% Similarity=0.132 Sum_probs=56.9
Q ss_pred hhhhhhcCCCcchhhHhHHhhccCceEEEEcCCCCCChHHHHHHc-CCCCccEEEcCCCCee--eecHHHHHHHHHH
Q 019711 260 LEVWAYEGSPFCKVVREVLVELELPHLQRSCARGSPKRQILIEKA-KHFQVPYLEDPNTGVQ--MFESADIVEYLRA 333 (337)
Q Consensus 260 L~l~~l~~sPf~~gvr~tLADl~L~~~l~~v~~g~pk~~e~~~~~-p~~qVP~L~d~~~g~~--l~ES~~I~~YL~~ 333 (337)
+++|+...||+|...+..|.++++.|+.++++.+.....++.+++ +...||+++.+ +|.. -.++..|..+|.+
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~~~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i~~~-~g~~l~~~~~~~~~~~l~~ 77 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKLGAAYEWVDIEEDEGAADRVVSVNNGNMTVPTVKFA-DGSFLTNPSAAQVKAKLQE 77 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHcCCceEEEeCcCCHhHHHHHHHHhCCCceeCEEEEC-CCeEecCCCHHHHHHHhhC
Confidence 457778899999999999999999999999887655556667776 88899999643 3444 5566677777753
No 159
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=97.61 E-value=0.00011 Score=55.99 Aligned_cols=71 Identities=13% Similarity=0.226 Sum_probs=59.8
Q ss_pred hhhhhhcCCCcchhhHhHHhhccCceEEEEcCCCCCChHHHHHHcCCCCccEEEcCCCCeeeecHHHHHHHHH
Q 019711 260 LEVWAYEGSPFCKVVREVLVELELPHLQRSCARGSPKRQILIEKAKHFQVPYLEDPNTGVQMFESADIVEYLR 332 (337)
Q Consensus 260 L~l~~l~~sPf~~gvr~tLADl~L~~~l~~v~~g~pk~~e~~~~~p~~qVP~L~d~~~g~~l~ES~~I~~YL~ 332 (337)
+++|+...||||..++..|.+.++.|+.++++......+++.++.+...||++.. +|..+....++.++-+
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~~i~~~~~di~~~~~~~~~~~~~~g~~~vP~i~i--~g~~igg~~~~~~~~~ 71 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSKGVTFTEIRVDGDPALRDEMMQRSGRRTVPQIFI--GDVHVGGCDDLYALDR 71 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHcCCCcEEEEecCCHHHHHHHHHHhCCCCcCEEEE--CCEEEcChHHHHHHHH
Confidence 3577888999999999999999999999999876667788888888899999987 4667777777776644
No 160
>KOG1695 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.54 E-value=0.00013 Score=66.72 Aligned_cols=72 Identities=17% Similarity=0.240 Sum_probs=59.4
Q ss_pred hhhhcCCCcchhhHhHHhhccCceEEEEcCCCCCChHHHHHHcCCCCccEEEcCCCCeeeecHHHHHHHHHHHhC
Q 019711 262 VWAYEGSPFCKVVREVLVELELPHLQRSCARGSPKRQILIEKAKHFQVPYLEDPNTGVQMFESADIVEYLRATYA 336 (337)
Q Consensus 262 l~~l~~sPf~~gvr~tLADl~L~~~l~~v~~g~pk~~e~~~~~p~~qVP~L~d~~~g~~l~ES~~I~~YL~~~y~ 336 (337)
++.+...-++--.|+.++..+++|+...+..++. ..++...+|.+|+|+|.. +|..+.+|.+|++||+++|+
T Consensus 6 L~Yf~~RG~ae~iR~lf~~a~v~fEd~r~~~~~~-w~~~K~~~pfgqlP~l~v--Dg~~i~QS~AI~RyLArk~g 77 (206)
T KOG1695|consen 6 LTYFNIRGLAEPIRLLFAYAGVSFEDKRITMEDA-WEELKDKMPFGQLPVLEV--DGKKLVQSRAILRYLARKFG 77 (206)
T ss_pred EEecCcchhHHHHHHHHHhcCCCcceeeeccccc-hhhhcccCCCCCCCEEeE--CCEeeccHHHHHHHHHHHhC
Confidence 3344556677778999999999999999987753 445556789999999977 49999999999999999986
No 161
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=97.53 E-value=0.00015 Score=54.61 Aligned_cols=69 Identities=13% Similarity=0.190 Sum_probs=53.3
Q ss_pred hhhhhhcCCCcchhhHhHHhhccCceEEEEcCCCCCChHHHHHHcCCCCccEEEcCCC-CeeeecHHHHHH
Q 019711 260 LEVWAYEGSPFCKVVREVLVELELPHLQRSCARGSPKRQILIEKAKHFQVPYLEDPNT-GVQMFESADIVE 329 (337)
Q Consensus 260 L~l~~l~~sPf~~gvr~tLADl~L~~~l~~v~~g~pk~~e~~~~~p~~qVP~L~d~~~-g~~l~ES~~I~~ 329 (337)
+++|...+||||..++..|.+.+++|+.+++.... ...+.+...+..+||+++.+++ -...|+...|.+
T Consensus 1 v~ly~~~~Cp~C~~ak~~L~~~~i~~~~~di~~~~-~~~~~~~~~g~~~vP~v~~~g~~~~~G~~~~~~~~ 70 (72)
T TIGR02194 1 ITVYSKNNCVQCKMTKKALEEHGIAFEEINIDEQP-EAIDYVKAQGFRQVPVIVADGDLSWSGFRPDKLKA 70 (72)
T ss_pred CEEEeCCCCHHHHHHHHHHHHCCCceEEEECCCCH-HHHHHHHHcCCcccCEEEECCCcEEeccCHHHHHh
Confidence 35788889999999999999999999999998654 4445555668889999987432 355777766643
No 162
>KOG3029 consensus Glutathione S-transferase-related protein [General function prediction only]
Probab=97.48 E-value=0.00013 Score=68.90 Aligned_cols=69 Identities=29% Similarity=0.315 Sum_probs=55.0
Q ss_pred chhhhhhcCCCcchhhHhHHhhccCceEEEEcCCCCCChHHHHHHcCCCCccEEEcCCCCeeeecHHHHHHHHH
Q 019711 259 PLEVWAYEGSPFCKVVREVLVELELPHLQRSCARGSPKRQILIEKAKHFQVPYLEDPNTGVQMFESADIVEYLR 332 (337)
Q Consensus 259 ~L~l~~l~~sPf~~gvr~tLADl~L~~~l~~v~~g~pk~~e~~~~~p~~qVP~L~d~~~g~~l~ES~~I~~YL~ 332 (337)
.+.+|.|+.||||+++|-.|..-+|+|+++.|+.-. + .=++-....+||.|.. .|.+|.||..|+.-|+
T Consensus 90 ~l~LyQyetCPFCcKVrAFLDyhgisY~VVEVnpV~--r-~eIk~SsykKVPil~~--~Geqm~dSsvIIs~la 158 (370)
T KOG3029|consen 90 DLVLYQYETCPFCCKVRAFLDYHGISYAVVEVNPVL--R-QEIKWSSYKKVPILLI--RGEQMVDSSVIISLLA 158 (370)
T ss_pred eEEEEeeccCchHHHHHHHHhhcCCceEEEEecchh--h-hhccccccccccEEEe--ccceechhHHHHHHHH
Confidence 567889999999999999999999999999987431 1 2222334578999987 3778999999998774
No 163
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=97.48 E-value=0.00017 Score=61.26 Aligned_cols=44 Identities=16% Similarity=0.239 Sum_probs=35.4
Q ss_pred eEEeecCCCcCHHHHHHHHHHcCCCeeEEEcCCCCCCChhHHHhh
Q 019711 141 IEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQM 185 (337)
Q Consensus 141 l~LY~~~~cP~c~kVr~~L~elgl~ye~~~v~~~~~~~~~e~~~~ 185 (337)
++||+.++|++|++++.+|++.||+|+.+++.... ....++.++
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~gi~~~~idi~~~~-~~~~eL~~~ 45 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEHDIPFTERNIFSSP-LTIDEIKQI 45 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCCcEEeeccCCh-hhHHHHHHH
Confidence 89999999999999999999999999999984332 234444433
No 164
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=97.46 E-value=0.00021 Score=57.88 Aligned_cols=47 Identities=15% Similarity=0.244 Sum_probs=38.0
Q ss_pred eEEeecCCCcCHHHHHHHHHHcCCCeeEEEcCCCCCCChhHHHhhCCC
Q 019711 141 IEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGK 188 (337)
Q Consensus 141 l~LY~~~~cP~c~kVr~~L~elgl~ye~~~v~~~~~~~~~e~~~~np~ 188 (337)
++||+.++||+|++++.+|++.|++|+.+++.... ....++.++...
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~~~-~~~~~l~~~~~~ 47 (105)
T cd02977 1 ITIYGNPNCSTSRKALAWLEEHGIEYEFIDYLKEP-PTKEELKELLAK 47 (105)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCCcEEEeeccCC-CCHHHHHHHHHh
Confidence 57999999999999999999999999999985333 245566666544
No 165
>PTZ00062 glutaredoxin; Provisional
Probab=97.45 E-value=0.0056 Score=55.91 Aligned_cols=155 Identities=11% Similarity=0.060 Sum_probs=98.6
Q ss_pred eEEeecCCCcCHHHHHHHHHHcCC---CeeEEEcCCCCCCChhHHHhhCCCCCcCeEEcCCCCeeE-----ecchhHHHH
Q 019711 141 IEIYEYESCPFCRKVREIVAVLDL---DVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSM-----YESDNIIKY 212 (337)
Q Consensus 141 l~LY~~~~cP~c~kVr~~L~elgl---~ye~~~v~~~~~~~~~e~~~~np~~kVP~Lvd~~~g~~l-----~ES~aIi~Y 212 (337)
+-.+.-+|||.|+.+..+|.++-- ++..+.|+.. +.-..||.++--.+|..+ .....+..+
T Consensus 21 vl~f~a~w~~~C~~m~~vl~~l~~~~~~~~F~~V~~d-----------~~V~~vPtfv~~~~g~~i~r~~G~~~~~~~~~ 89 (204)
T PTZ00062 21 VLYVKSSKEPEYEQLMDVCNALVEDFPSLEFYVVNLA-----------DANNEYGVFEFYQNSQLINSLEGCNTSTLVSF 89 (204)
T ss_pred EEEEeCCCCcchHHHHHHHHHHHHHCCCcEEEEEccc-----------cCcccceEEEEEECCEEEeeeeCCCHHHHHHH
Confidence 334457799999999999888743 3555555321 566789977432366533 234566677
Q ss_pred HhhccCCCCcchhhhhhhhhhhhhhhhhhccccCCccCCCCCCCCCchhhhhh-----cCCCcchhhHhHHhhccCceEE
Q 019711 213 LVGKYGDGSVPFMLSLGLLTTLTEGFAMIGRLGKGQSYTPAKLPPKPLEVWAY-----EGSPFCKVVREVLVELELPHLQ 287 (337)
Q Consensus 213 L~~~y~~~~~P~~~~~~al~~l~~~l~~~~~~~~g~~~~~~~~~~k~L~l~~l-----~~sPf~~gvr~tLADl~L~~~l 287 (337)
+.+.++.... .....+. ..+ + ..+.+.+|.. ..||||....-.|.+.++.|..
T Consensus 90 ~~~~~~~~~~-~~~~~~v-~~l---i-----------------~~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~~i~y~~ 147 (204)
T PTZ00062 90 IRGWAQKGSS-EDTVEKI-ERL---I-----------------RNHKILLFMKGSKTFPFCRFSNAVVNMLNSSGVKYET 147 (204)
T ss_pred HHHHcCCCCH-HHHHHHH-HHH---H-----------------hcCCEEEEEccCCCCCCChhHHHHHHHHHHcCCCEEE
Confidence 7666653211 1111111 111 0 1123334422 3799999999999999999999
Q ss_pred EEcCCCCCChHHHHHHcCCCCccEEEcCCCCeeeecHHHHHHH
Q 019711 288 RSCARGSPKRQILIEKAKHFQVPYLEDPNTGVQMFESADIVEY 330 (337)
Q Consensus 288 ~~v~~g~pk~~e~~~~~p~~qVP~L~d~~~g~~l~ES~~I~~Y 330 (337)
+++..+...++++.++++..+||.+.. +|..+.....+.+.
T Consensus 148 ~DI~~d~~~~~~l~~~sg~~TvPqVfI--~G~~IGG~d~l~~l 188 (204)
T PTZ00062 148 YNIFEDPDLREELKVYSNWPTYPQLYV--NGELIGGHDIIKEL 188 (204)
T ss_pred EEcCCCHHHHHHHHHHhCCCCCCeEEE--CCEEEcChHHHHHH
Confidence 999876555677778889899999977 36666666666553
No 166
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=97.43 E-value=0.00025 Score=58.59 Aligned_cols=33 Identities=21% Similarity=0.375 Sum_probs=31.1
Q ss_pred eEEeecCCCcCHHHHHHHHHHcCCCeeEEEcCC
Q 019711 141 IEIYEYESCPFCRKVREIVAVLDLDVLYYPCPR 173 (337)
Q Consensus 141 l~LY~~~~cP~c~kVr~~L~elgl~ye~~~v~~ 173 (337)
++||+.+.|++|++++.+|++.|++|+.+++..
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~gi~~~~idi~~ 34 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEHQIPFEERNLFK 34 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCceEEEecCC
Confidence 899999999999999999999999999999843
No 167
>cd03078 GST_N_Metaxin1_like GST_N family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins including Tom37 from fungi. Mammalian metaxin (or metaxin 1) and the fungal protein Tom37 are components of preprotein import complexes of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals.
Probab=97.36 E-value=0.00045 Score=52.62 Aligned_cols=58 Identities=22% Similarity=0.250 Sum_probs=48.4
Q ss_pred CCCcchhhHhHHhhccCceEEEEcCCCCCChHHHHHHcCCCCccEEEcCCCCeeeecHHHHHHHHHHH
Q 019711 267 GSPFCKVVREVLVELELPHLQRSCARGSPKRQILIEKAKHFQVPYLEDPNTGVQMFESADIVEYLRAT 334 (337)
Q Consensus 267 ~sPf~~gvr~tLADl~L~~~l~~v~~g~pk~~e~~~~~p~~qVP~L~d~~~g~~l~ES~~I~~YL~~~ 334 (337)
.+|||.++...|.-.+++|++..... ....|.+++|+|++ +|..+.||..|++||.++
T Consensus 15 ~sp~clk~~~~Lr~~~~~~~v~~~~n--------~~~sp~gkLP~l~~--~~~~i~d~~~Ii~~L~~~ 72 (73)
T cd03078 15 VDPECLAVLAYLKFAGAPLKVVPSNN--------PWRSPTGKLPALLT--SGTKISGPEKIIEYLRKQ 72 (73)
T ss_pred CCHHHHHHHHHHHcCCCCEEEEecCC--------CCCCCCCccCEEEE--CCEEecChHHHHHHHHHc
Confidence 47999999999999999998875532 13457899999999 588999999999999875
No 168
>PHA03050 glutaredoxin; Provisional
Probab=97.35 E-value=0.00062 Score=55.94 Aligned_cols=71 Identities=13% Similarity=0.144 Sum_probs=57.3
Q ss_pred CCchhhhhhcCCCcchhhHhHHhhccC---ceEEEEcCCCC---CChHHHHHHcCCCCccEEEcCCCCeeeecHHHHHH
Q 019711 257 PKPLEVWAYEGSPFCKVVREVLVELEL---PHLQRSCARGS---PKRQILIEKAKHFQVPYLEDPNTGVQMFESADIVE 329 (337)
Q Consensus 257 ~k~L~l~~l~~sPf~~gvr~tLADl~L---~~~l~~v~~g~---pk~~e~~~~~p~~qVP~L~d~~~g~~l~ES~~I~~ 329 (337)
...+.+|....||||..++-.|.++++ .|+.++++... ...+++.+.++..+||.+.. +|..+....++.+
T Consensus 12 ~~~V~vys~~~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI--~g~~iGG~ddl~~ 88 (108)
T PHA03050 12 NNKVTIFVKFTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGGRTVPRIFF--GKTSIGGYSDLLE 88 (108)
T ss_pred cCCEEEEECCCChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEEE--CCEEEeChHHHHH
Confidence 356888999999999999999999999 78899998633 23667778889999999987 4666666666665
No 169
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.27 E-value=0.0006 Score=52.11 Aligned_cols=62 Identities=19% Similarity=0.364 Sum_probs=48.0
Q ss_pred EEeecCCCcCHHHHHHHHHHcCCCeeEEEcCCCCCC---------ChhHHH--hhCCCCCcCeEEcCCCCeeEe
Q 019711 142 EIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPN---------FRPKVL--QMGGKKQFPYMVDPNTGVSMY 204 (337)
Q Consensus 142 ~LY~~~~cP~c~kVr~~L~elgl~ye~~~v~~~~~~---------~~~e~~--~~np~~kVP~Lvd~~~g~~l~ 204 (337)
+||+...||-|....+.|+.++++|+.++|.....+ .+++|- +.|+.-.||+|... ||.++.
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl~v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~~-d~~vVl 77 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERLNVDYDFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALLTD-DGKVVL 77 (85)
T ss_pred eeeccccCcchHHHHHHHHHcCCCceeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEEeC-CCcEEE
Confidence 899999999999999999999999999999533322 235553 45888899999642 666554
No 170
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=97.24 E-value=0.00092 Score=50.81 Aligned_cols=72 Identities=18% Similarity=0.228 Sum_probs=58.8
Q ss_pred hhhhhhcCCCcchhhHhHHhhccCceEEEEcCCCCCC---hHHHHHHcCCCCccEEEcCCCCeeeecHHHHHHHHHH
Q 019711 260 LEVWAYEGSPFCKVVREVLVELELPHLQRSCARGSPK---RQILIEKAKHFQVPYLEDPNTGVQMFESADIVEYLRA 333 (337)
Q Consensus 260 L~l~~l~~sPf~~gvr~tLADl~L~~~l~~v~~g~pk---~~e~~~~~p~~qVP~L~d~~~g~~l~ES~~I~~YL~~ 333 (337)
+.+|+..+||||..++-.|.++++.|..++++..... ..++.+.++..++|++.. +|..+.+...|.++..+
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v~~--~g~~igg~~~~~~~~~~ 76 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGVKPAVVELDQHEDGSEIQDYLQELTGQRTVPNVFI--GGKFIGGCDDLMALHKS 76 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCCCcEEEEEeCCCChHHHHHHHHHHhCCCCCCeEEE--CCEEEcCHHHHHHHHHc
Confidence 4567778999999999999999999999988865421 345667778889999987 47789999999988764
No 171
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=97.22 E-value=0.00043 Score=57.33 Aligned_cols=42 Identities=24% Similarity=0.577 Sum_probs=34.2
Q ss_pred eEEeecCCCcCHHHHHHHHHHcCCCeeEEEcCCCCCCChhHHH
Q 019711 141 IEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVL 183 (337)
Q Consensus 141 l~LY~~~~cP~c~kVr~~L~elgl~ye~~~v~~~~~~~~~e~~ 183 (337)
++||+.+.||+|++++.+|++.|++|+.+++..... .+.++.
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~~~~-~~~el~ 42 (117)
T TIGR01617 1 IKVYGSPNCTTCKKARRWLEANGIEYQFIDIGEDGP-TREELL 42 (117)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCceEEEecCCChh-hHHHHH
Confidence 579999999999999999999999999999843322 344444
No 172
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=97.18 E-value=0.00095 Score=53.62 Aligned_cols=72 Identities=17% Similarity=0.146 Sum_probs=56.4
Q ss_pred Cchhhhhh-----cCCCcchhhHhHHhhccCceEEEEcCCCCCChHHHHHHcCCCCccEEEcCCCCeeeecHHHHHHHH
Q 019711 258 KPLEVWAY-----EGSPFCKVVREVLVELELPHLQRSCARGSPKRQILIEKAKHFQVPYLEDPNTGVQMFESADIVEYL 331 (337)
Q Consensus 258 k~L~l~~l-----~~sPf~~gvr~tLADl~L~~~l~~v~~g~pk~~e~~~~~p~~qVP~L~d~~~g~~l~ES~~I~~YL 331 (337)
+.+.+|.. ..||||..++-.|.+++++|+.+++..+....+++.++++..+||.+.. +|..+....++.+..
T Consensus 12 ~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~~~~~~~~l~~~tg~~tvP~vfi--~g~~iGG~ddl~~l~ 88 (97)
T TIGR00365 12 NPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNVLEDPEIRQGIKEYSNWPTIPQLYV--KGEFVGGCDIIMEMY 88 (97)
T ss_pred CCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHhCCCCCCEEEE--CCEEEeChHHHHHHH
Confidence 45566633 6799999999999999999999999766555666777888889999987 466677766776643
No 173
>PRK12559 transcriptional regulator Spx; Provisional
Probab=97.15 E-value=0.00078 Score=57.23 Aligned_cols=45 Identities=18% Similarity=0.251 Sum_probs=36.0
Q ss_pred ceEEeecCCCcCHHHHHHHHHHcCCCeeEEEcCCCCCCChhHHHhh
Q 019711 140 PIEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQM 185 (337)
Q Consensus 140 ~l~LY~~~~cP~c~kVr~~L~elgl~ye~~~v~~~~~~~~~e~~~~ 185 (337)
|+++|+.+.|+.|++++.+|++.|++|+.+++..... ..+++.++
T Consensus 1 mi~iY~~~~C~~crkA~~~L~~~gi~~~~~di~~~~~-s~~el~~~ 45 (131)
T PRK12559 1 MVVLYTTASCASCRKAKAWLEENQIDYTEKNIVSNSM-TVDELKSI 45 (131)
T ss_pred CEEEEeCCCChHHHHHHHHHHHcCCCeEEEEeeCCcC-CHHHHHHH
Confidence 3899999999999999999999999999999854333 34444433
No 174
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=97.12 E-value=0.0012 Score=52.15 Aligned_cols=73 Identities=18% Similarity=0.119 Sum_probs=59.2
Q ss_pred Cchhhhhh-----cCCCcchhhHhHHhhccCceEEEEcCCCCCChHHHHHHcCCCCccEEEcCCCCeeeecHHHHHHHHH
Q 019711 258 KPLEVWAY-----EGSPFCKVVREVLVELELPHLQRSCARGSPKRQILIEKAKHFQVPYLEDPNTGVQMFESADIVEYLR 332 (337)
Q Consensus 258 k~L~l~~l-----~~sPf~~gvr~tLADl~L~~~l~~v~~g~pk~~e~~~~~p~~qVP~L~d~~~g~~l~ES~~I~~YL~ 332 (337)
+.+.+|.. ..||||..++-.|.+.+++|+.+++..+....+++.++++..+||.+.. +|..+.....+.++.+
T Consensus 8 ~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~~~~~~~~l~~~~g~~tvP~vfi--~g~~iGG~~~l~~l~~ 85 (90)
T cd03028 8 NPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILEDEEVRQGLKEYSNWPTFPQLYV--NGELVGGCDIVKEMHE 85 (90)
T ss_pred CCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHHHHHhCCCCCCEEEE--CCEEEeCHHHHHHHHH
Confidence 45666643 5899999999999999999999999876555677778889999999977 4777888888887543
No 175
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=97.09 E-value=0.00099 Score=56.68 Aligned_cols=43 Identities=21% Similarity=0.366 Sum_probs=35.1
Q ss_pred eEEeecCCCcCHHHHHHHHHHcCCCeeEEEcCCCCCCChhHHHh
Q 019711 141 IEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQ 184 (337)
Q Consensus 141 l~LY~~~~cP~c~kVr~~L~elgl~ye~~~v~~~~~~~~~e~~~ 184 (337)
++||+.+.|+.|++++.+|++.|++|+.+++.+... ..+++.+
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~~i~~~~~d~~~~~~-s~~eL~~ 44 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNAHQLSYKEQNLGKEPL-TKEEILA 44 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHHcCCCeEEEECCCCCC-CHHHHHH
Confidence 899999999999999999999999999999854333 3344433
No 176
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=97.06 E-value=0.0017 Score=52.33 Aligned_cols=72 Identities=14% Similarity=0.180 Sum_probs=56.2
Q ss_pred CCchhhhhhcCCCcchhhHhHHhhccCceEEEEcCCCCC---ChHHHHHHcCCCCccEEEcCCCCeeeecHHHHHHH
Q 019711 257 PKPLEVWAYEGSPFCKVVREVLVELELPHLQRSCARGSP---KRQILIEKAKHFQVPYLEDPNTGVQMFESADIVEY 330 (337)
Q Consensus 257 ~k~L~l~~l~~sPf~~gvr~tLADl~L~~~l~~v~~g~p---k~~e~~~~~p~~qVP~L~d~~~g~~l~ES~~I~~Y 330 (337)
...+.+|....||||...+-.|.+++++|+.++++.... ..+++.+.++..+||.+.. +|..+....++.+.
T Consensus 7 ~~~Vvvysk~~Cp~C~~ak~~L~~~~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vfi--~g~~iGG~ddl~~l 81 (99)
T TIGR02189 7 EKAVVIFSRSSCCMCHVVKRLLLTLGVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAVFV--GGKLVGGLENVMAL 81 (99)
T ss_pred cCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeEEE--CCEEEcCHHHHHHH
Confidence 466889999999999999999999999999999986542 2234556678899999977 46666666666553
No 177
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=97.04 E-value=0.002 Score=58.58 Aligned_cols=70 Identities=17% Similarity=0.226 Sum_probs=61.0
Q ss_pred hhcCCCcchhhHhHHhhccCceEEEEcCCCCCChHHHHHHcCCCCccEEEcCCCCeeeecHHHHHHHHHHHhC
Q 019711 264 AYEGSPFCKVVREVLVELELPHLQRSCARGSPKRQILIEKAKHFQVPYLEDPNTGVQMFESADIVEYLRATYA 336 (337)
Q Consensus 264 ~l~~sPf~~gvr~tLADl~L~~~l~~v~~g~pk~~e~~~~~p~~qVP~L~d~~~g~~l~ES~~I~~YL~~~y~ 336 (337)
...+||||+..-++|-+.+++|.+..++... +.++|.+..|.+++|+|.. ++....||..|.+.|+++|+
T Consensus 17 ~~Gdcpf~qr~~m~L~~k~~~f~vttVd~~~-kp~~f~~~sp~~~~P~l~~--d~~~~tDs~~Ie~~Lee~l~ 86 (221)
T KOG1422|consen 17 SLGDCPFCQRLFMTLELKGVPFKVTTVDLSR-KPEWFLDISPGGKPPVLKF--DEKWVTDSDKIEEFLEEKLP 86 (221)
T ss_pred cCCCChhHHHHHHHHHHcCCCceEEEeecCC-CcHHHHhhCCCCCCCeEEe--CCceeccHHHHHHHHHHhcC
Confidence 3568999999999999999999998887653 5666778999999999998 46789999999999999987
No 178
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=96.99 E-value=0.0042 Score=47.40 Aligned_cols=58 Identities=19% Similarity=0.295 Sum_probs=43.4
Q ss_pred CceEEeecCCCcCHHHH----HHHHHHcCCCeeEEEcCCCCCCChhHHHhhCCCCCcCeEEcCCCCeeEec
Q 019711 139 KPIEIYEYESCPFCRKV----REIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYE 205 (337)
Q Consensus 139 ~~l~LY~~~~cP~c~kV----r~~L~elgl~ye~~~v~~~~~~~~~e~~~~np~~kVP~Lvd~~~g~~l~E 205 (337)
|.+++|. .+||+|..+ ..+++++|++++.+.|+ ..++ ....+-..+|+++. +|..+++
T Consensus 1 m~i~~~a-~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~-----~~~~-a~~~~v~~vPti~i--~G~~~~~ 62 (76)
T TIGR00412 1 MKIQIYG-TGCANCQMTEKNVKKAVEELGIDAEFEKVT-----DMNE-ILEAGVTATPGVAV--DGELVIM 62 (76)
T ss_pred CEEEEEC-CCCcCHHHHHHHHHHHHHHcCCCeEEEEeC-----CHHH-HHHcCCCcCCEEEE--CCEEEEE
Confidence 4578887 899999999 66888889999998884 1223 34468889999976 6655443
No 179
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=96.98 E-value=0.0006 Score=49.28 Aligned_cols=54 Identities=26% Similarity=0.339 Sum_probs=47.9
Q ss_pred hhhhhcCCCcchhhHhHHhhccCceEEEEcCCCCCChHHHHHHcCCCCccEEEc
Q 019711 261 EVWAYEGSPFCKVVREVLVELELPHLQRSCARGSPKRQILIEKAKHFQVPYLED 314 (337)
Q Consensus 261 ~l~~l~~sPf~~gvr~tLADl~L~~~l~~v~~g~pk~~e~~~~~p~~qVP~L~d 314 (337)
++|...+||+|...+..|.+.+++|+.+++......++++.+..+..++|.+..
T Consensus 2 ~vy~~~~C~~C~~~~~~L~~~~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i 55 (60)
T PF00462_consen 2 VVYTKPGCPYCKKAKEFLDEKGIPYEEVDVDEDEEAREELKELSGVRTVPQVFI 55 (60)
T ss_dssp EEEESTTSHHHHHHHHHHHHTTBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEE
T ss_pred EEEEcCCCcCHHHHHHHHHHcCCeeeEcccccchhHHHHHHHHcCCCccCEEEE
Confidence 567788999999999999999999999999987666777778879899999977
No 180
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=96.94 E-value=0.0031 Score=47.93 Aligned_cols=71 Identities=20% Similarity=0.268 Sum_probs=56.6
Q ss_pred hhhhhcCCCcchhhHhHHhhccCc--eEEEEcCCCCC--C-hHHHHHHcCCCCccEEEcCCCCeeeecHHHHHHHHHH
Q 019711 261 EVWAYEGSPFCKVVREVLVELELP--HLQRSCARGSP--K-RQILIEKAKHFQVPYLEDPNTGVQMFESADIVEYLRA 333 (337)
Q Consensus 261 ~l~~l~~sPf~~gvr~tLADl~L~--~~l~~v~~g~p--k-~~e~~~~~p~~qVP~L~d~~~g~~l~ES~~I~~YL~~ 333 (337)
.+|...+||||...+-.|.++++. |+..+++.... . .+.+.++.+..++|.+.. +|..+.++.++.++.++
T Consensus 2 ~~f~~~~Cp~C~~~~~~L~~~~i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~i--~g~~igg~~~~~~~~~~ 77 (84)
T TIGR02180 2 VVFSKSYCPYCKKAKEILAKLNVKPAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIFI--NGKFIGGCSDLLALYKS 77 (84)
T ss_pred EEEECCCChhHHHHHHHHHHcCCCCCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEEE--CCEEEcCHHHHHHHHHc
Confidence 456778999999999999999998 88888876532 2 234666778889999987 47889999999887653
No 181
>PRK10026 arsenate reductase; Provisional
Probab=96.91 E-value=0.0018 Score=55.78 Aligned_cols=47 Identities=17% Similarity=0.277 Sum_probs=37.2
Q ss_pred CCceEEeecCCCcCHHHHHHHHHHcCCCeeEEEcCCCCCCChhHHHhh
Q 019711 138 EKPIEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQM 185 (337)
Q Consensus 138 ~~~l~LY~~~~cP~c~kVr~~L~elgl~ye~~~v~~~~~~~~~e~~~~ 185 (337)
|++|+||+++.|.-|||++.+|++.|++|+.+++-.... ..+|+.++
T Consensus 1 m~~i~iY~~p~Cst~RKA~~wL~~~gi~~~~~d~~~~pp-t~~eL~~~ 47 (141)
T PRK10026 1 MSNITIYHNPACGTSRNTLEMIRNSGTEPTIIHYLETPP-TRDELVKL 47 (141)
T ss_pred CCEEEEEeCCCCHHHHHHHHHHHHCCCCcEEEeeeCCCc-CHHHHHHH
Confidence 457999999999999999999999999999999843322 34444433
No 182
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=96.89 E-value=0.0017 Score=52.97 Aligned_cols=44 Identities=14% Similarity=0.286 Sum_probs=35.1
Q ss_pred eEEeecCCCcCHHHHHHHHHHcCCCeeEEEcCCCCCCChhHHHhh
Q 019711 141 IEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQM 185 (337)
Q Consensus 141 l~LY~~~~cP~c~kVr~~L~elgl~ye~~~v~~~~~~~~~e~~~~ 185 (337)
|++|+.+.|+.|++++.+|++.|++|+.+++..... ..+|+.++
T Consensus 1 i~iy~~~~C~~crka~~~L~~~~i~~~~~di~~~p~-s~~eL~~~ 44 (105)
T cd03035 1 ITLYGIKNCDTVKKARKWLEARGVAYTFHDYRKDGL-DAATLERW 44 (105)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCCeEEEecccCCC-CHHHHHHH
Confidence 579999999999999999999999999999843332 33444433
No 183
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=96.84 E-value=0.0022 Score=53.14 Aligned_cols=44 Identities=11% Similarity=0.087 Sum_probs=35.3
Q ss_pred eEEeecCCCcCHHHHHHHHHHcCCCeeEEEcCCCCCCChhHHHhh
Q 019711 141 IEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQM 185 (337)
Q Consensus 141 l~LY~~~~cP~c~kVr~~L~elgl~ye~~~v~~~~~~~~~e~~~~ 185 (337)
++||+.+.|+.|++++.+|++.|++|+.+++-..+. ..+|+.++
T Consensus 2 i~iy~~p~C~~crkA~~~L~~~gi~~~~~d~~~~p~-s~~eL~~~ 45 (113)
T cd03033 2 IIFYEKPGCANNARQKALLEAAGHEVEVRDLLTEPW-TAETLRPF 45 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCCcEEeehhcCCC-CHHHHHHH
Confidence 789999999999999999999999999999843332 34444433
No 184
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=96.83 E-value=0.0023 Score=53.39 Aligned_cols=46 Identities=20% Similarity=0.384 Sum_probs=37.2
Q ss_pred CceEEeecCCCcCHHHHHHHHHHcCCCeeEEEcCCCCCCChhHHHhh
Q 019711 139 KPIEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQM 185 (337)
Q Consensus 139 ~~l~LY~~~~cP~c~kVr~~L~elgl~ye~~~v~~~~~~~~~e~~~~ 185 (337)
|+++||+.+.|--|++++.+|++.||+|+.+++-..+. -++++.++
T Consensus 1 ~~itiy~~p~C~t~rka~~~L~~~gi~~~~~~y~~~~~-s~~eL~~~ 46 (117)
T COG1393 1 MMITIYGNPNCSTCRKALAWLEEHGIEYTFIDYLKTPP-SREELKKI 46 (117)
T ss_pred CeEEEEeCCCChHHHHHHHHHHHcCCCcEEEEeecCCC-CHHHHHHH
Confidence 57999999999999999999999999999998743333 34555443
No 185
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=96.56 E-value=0.0048 Score=52.11 Aligned_cols=34 Identities=18% Similarity=0.195 Sum_probs=31.6
Q ss_pred ceEEeecCCCcCHHHHHHHHHHcCCCeeEEEcCC
Q 019711 140 PIEIYEYESCPFCRKVREIVAVLDLDVLYYPCPR 173 (337)
Q Consensus 140 ~l~LY~~~~cP~c~kVr~~L~elgl~ye~~~v~~ 173 (337)
.++||+++.|.-|+|++.+|++.|++|+.+++-+
T Consensus 2 ~i~iY~~p~Cst~RKA~~~L~~~gi~~~~~d~~~ 35 (126)
T TIGR01616 2 TIIFYEKPGCANNARQKAALKASGHDVEVQDILK 35 (126)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHCCCCcEEEeccC
Confidence 5899999999999999999999999999999843
No 186
>PRK10853 putative reductase; Provisional
Probab=96.53 E-value=0.0045 Score=51.67 Aligned_cols=44 Identities=14% Similarity=0.262 Sum_probs=35.2
Q ss_pred eEEeecCCCcCHHHHHHHHHHcCCCeeEEEcCCCCCCChhHHHhh
Q 019711 141 IEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQM 185 (337)
Q Consensus 141 l~LY~~~~cP~c~kVr~~L~elgl~ye~~~v~~~~~~~~~e~~~~ 185 (337)
+++|+.+.|.-|+|++.+|++.|++|+.+++-+.+. ..+++.+.
T Consensus 2 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~d~~k~p~-s~~eL~~~ 45 (118)
T PRK10853 2 VTLYGIKNCDTIKKARRWLEAQGIDYRFHDYRVDGL-DSELLQGF 45 (118)
T ss_pred EEEEcCCCCHHHHHHHHHHHHcCCCcEEeehccCCc-CHHHHHHH
Confidence 899999999999999999999999999999843332 33444433
No 187
>PF10568 Tom37: Outer mitochondrial membrane transport complex protein; InterPro: IPR019564 Tom37 is one of the outer membrane proteins that make up the TOM complex for guiding cytosolic mitochondrial beta-barrel proteins from the cytosol across the outer mitochondrial membrane into the intramembrane space. In conjunction with Tom70, it guides peptides without an mitochondrial targeting sequence (MTS) into Tom40, the protein that forms the passage through the outer membrane []. It has homology with metaxin, also part of the outer mitochondrial membrane beta-barrel protein transport complex []. This entry represents outer mitochondrial membrane transport complex proteins Tom37 and metaxin.; GO: 0006626 protein targeting to mitochondrion, 0005741 mitochondrial outer membrane
Probab=96.45 E-value=0.0089 Score=45.57 Aligned_cols=57 Identities=23% Similarity=0.353 Sum_probs=47.6
Q ss_pred CCcCHHHHHHHHHHcCCC---eeEEEcCCCCCCChhHHHhhCCCCCcCeEEcCCCCeeEecchhHHHHHh
Q 019711 148 SCPFCRKVREIVAVLDLD---VLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLV 214 (337)
Q Consensus 148 ~cP~c~kVr~~L~elgl~---ye~~~v~~~~~~~~~e~~~~np~~kVP~Lvd~~~g~~l~ES~aIi~YL~ 214 (337)
.+|.|.++.+.|+..+.+ ++.+.. ++. .+.|.+++|+|++ .++.++.+-.+|++||.
T Consensus 13 id~ecLa~~~yl~~~~~~~~~~~vv~s--~n~-------~~Sptg~LP~L~~-~~~~~vsg~~~Iv~yL~ 72 (72)
T PF10568_consen 13 IDPECLAVIAYLKFAGAPEQQFKVVPS--NNP-------WLSPTGELPALID-SGGTWVSGFRNIVEYLR 72 (72)
T ss_pred cCHHHHHHHHHHHhCCCCCceEEEEEc--CCC-------CcCCCCCCCEEEE-CCCcEEECHHHHHHhhC
Confidence 478899999999999999 888775 111 2679999999997 47789999999999983
No 188
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=96.38 E-value=0.025 Score=43.01 Aligned_cols=59 Identities=17% Similarity=0.405 Sum_probs=41.4
Q ss_pred CceEEeecCCCcCHHHHHHH----HHHcCCCeeEEEcCCCCCCChhHHHhhCCCCCcCeEEcCCCCeeEecc
Q 019711 139 KPIEIYEYESCPFCRKVREI----VAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYES 206 (337)
Q Consensus 139 ~~l~LY~~~~cP~c~kVr~~----L~elgl~ye~~~v~~~~~~~~~e~~~~np~~kVP~Lvd~~~g~~l~ES 206 (337)
|.+++|+ ++||+|.++..+ +.++|++++.+++ ...+++ +..+-..+|+|+. ||...+..
T Consensus 1 m~I~v~~-~~C~~C~~~~~~~~~~~~~~~i~~ei~~~-----~~~~~~-~~ygv~~vPalvI--ng~~~~~G 63 (76)
T PF13192_consen 1 MKIKVFS-PGCPYCPELVQLLKEAAEELGIEVEIIDI-----EDFEEI-EKYGVMSVPALVI--NGKVVFVG 63 (76)
T ss_dssp EEEEEEC-SSCTTHHHHHHHHHHHHHHTTEEEEEEET-----TTHHHH-HHTT-SSSSEEEE--TTEEEEES
T ss_pred CEEEEeC-CCCCCcHHHHHHHHHHHHhcCCeEEEEEc-----cCHHHH-HHcCCCCCCEEEE--CCEEEEEe
Confidence 4577854 679999977664 4556888887775 223455 7889999999977 67766554
No 189
>PLN02907 glutamate-tRNA ligase
Probab=96.32 E-value=0.0057 Score=65.63 Aligned_cols=61 Identities=13% Similarity=0.037 Sum_probs=47.5
Q ss_pred hhhhhcCCCcchhhHhHHhhccCceEEEEcCCCCCChHHHHHHcCCCCccEEEcCCCCeeeecHHHHHHHHHHHhC
Q 019711 261 EVWAYEGSPFCKVVREVLVELELPHLQRSCARGSPKRQILIEKAKHFQVPYLEDPNTGVQMFESADIVEYLRATYA 336 (337)
Q Consensus 261 ~l~~l~~sPf~~gvr~tLADl~L~~~l~~v~~g~pk~~e~~~~~p~~qVP~L~d~~~g~~l~ES~~I~~YL~~~y~ 336 (337)
+||....+ ...++.+.+.++++++++.. .+|.++||+|+++ +|..++||.+|++||++.|+
T Consensus 4 kLy~~~~S-~~~~v~~~L~~lgv~~e~~~-------------~~p~GkVPvLv~d-dG~~L~ES~AIl~YLa~~~p 64 (722)
T PLN02907 4 KLSFPPDS-PPLAVIAAAKVAGVPLTIDP-------------SLKSGSAPTLLFS-SGEKLTGTNVLLRYIARSAS 64 (722)
T ss_pred EEEECCCC-ChHHHHHHHHHcCCCcEEee-------------cCCCCCCcEEEEC-CCCEEECHHHHHHHHHHhCC
Confidence 45543333 35568888999999999864 2578999999864 47899999999999999875
No 190
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=96.32 E-value=0.1 Score=47.54 Aligned_cols=172 Identities=16% Similarity=0.214 Sum_probs=92.5
Q ss_pred ceEEeec---CCCcCHHHHHHHHHHcC-----CCeeEEEcCCCCCCChhHHHhhCCCCCcCeEEcCCCCeeEe----c--
Q 019711 140 PIEIYEY---ESCPFCRKVREIVAVLD-----LDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMY----E-- 205 (337)
Q Consensus 140 ~l~LY~~---~~cP~c~kVr~~L~elg-----l~ye~~~v~~~~~~~~~e~~~~np~~kVP~Lvd~~~g~~l~----E-- 205 (337)
.+.+|.. +||+.|+.+.-+++++. +.+..+.++. + ..++..+...-..+|.++--++|..+. +
T Consensus 22 ~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~--~-~~~~l~~~~~V~~~Pt~~~f~~g~~~~~~~~G~~ 98 (215)
T TIGR02187 22 EIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDT--P-EDKEEAEKYGVERVPTTIILEEGKDGGIRYTGIP 98 (215)
T ss_pred EEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCC--c-ccHHHHHHcCCCccCEEEEEeCCeeeEEEEeecC
Confidence 4777877 89999999999888873 3334455431 1 235688888999999985322554321 1
Q ss_pred -chhHHHHHhhccCCCCcchhhhhhhhhhhhhhhhhhccccCCccCCCCCCCCCchhhhhhcCCCcchhhHhHHhhccCc
Q 019711 206 -SDNIIKYLVGKYGDGSVPFMLSLGLLTTLTEGFAMIGRLGKGQSYTPAKLPPKPLEVWAYEGSPFCKVVREVLVELELP 284 (337)
Q Consensus 206 -S~aIi~YL~~~y~~~~~P~~~~~~al~~l~~~l~~~~~~~~g~~~~~~~~~~k~L~l~~l~~sPf~~gvr~tLADl~L~ 284 (337)
-..+..+|...++-......+.......+.. ......+.+|+-.+|++|......+.++.-.
T Consensus 99 ~~~~l~~~i~~~~~~~~~~~~L~~~~~~~l~~-----------------~~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~ 161 (215)
T TIGR02187 99 AGYEFAALIEDIVRVSQGEPGLSEKTVELLQS-----------------LDEPVRIEVFVTPTCPYCPYAVLMAHKFALA 161 (215)
T ss_pred CHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHh-----------------cCCCcEEEEEECCCCCCcHHHHHHHHHHHHh
Confidence 1233344444332100000000000000000 0011234456667899999888777776432
Q ss_pred ---eEEEEcCCCCCChHHHHHHcCCCCccEEEcCCCCee---eecHHHHHHHHHH
Q 019711 285 ---HLQRSCARGSPKRQILIEKAKHFQVPYLEDPNTGVQ---MFESADIVEYLRA 333 (337)
Q Consensus 285 ---~~l~~v~~g~pk~~e~~~~~p~~qVP~L~d~~~g~~---l~ES~~I~~YL~~ 333 (337)
.....++.. .-++..++.+-..+|+++-.++|.. ...-.++.++|.+
T Consensus 162 ~~~i~~~~vD~~--~~~~~~~~~~V~~vPtl~i~~~~~~~~G~~~~~~l~~~l~~ 214 (215)
T TIGR02187 162 NDKILGEMIEAN--ENPDLAEKYGVMSVPKIVINKGVEEFVGAYPEEQFLEYILS 214 (215)
T ss_pred cCceEEEEEeCC--CCHHHHHHhCCccCCEEEEecCCEEEECCCCHHHHHHHHHh
Confidence 222233322 3456777788778999975445641 2233466677653
No 191
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=96.26 E-value=0.018 Score=43.46 Aligned_cols=54 Identities=20% Similarity=0.323 Sum_probs=38.7
Q ss_pred ceEEeecCCCcCHHHHHHHHHHc----CCCeeEEEcCCCCCCChhHHHhhCCCCCcCeEEc
Q 019711 140 PIEIYEYESCPFCRKVREIVAVL----DLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVD 196 (337)
Q Consensus 140 ~l~LY~~~~cP~c~kVr~~L~el----gl~ye~~~v~~~~~~~~~e~~~~np~~kVP~Lvd 196 (337)
.++||..++||+|.++.-.|+++ +..+....|+.. + .++..+..+...+|+++.
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~--~-~~~~~~~~~v~~vPt~~~ 59 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVM--E-NPQKAMEYGIMAVPAIVI 59 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCc--c-CHHHHHHcCCccCCEEEE
Confidence 37899999999999999988753 544555555422 2 234556678889999976
No 192
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=96.23 E-value=0.012 Score=46.89 Aligned_cols=68 Identities=10% Similarity=0.023 Sum_probs=51.4
Q ss_pred eEEeecCCCc------CHHHHHHHHHHcCCCeeEEEcCCCCCCChhHHHhhCC----CCCcCeEEcCCCCeeEecchhHH
Q 019711 141 IEIYEYESCP------FCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGG----KKQFPYMVDPNTGVSMYESDNII 210 (337)
Q Consensus 141 l~LY~~~~cP------~c~kVr~~L~elgl~ye~~~v~~~~~~~~~e~~~~np----~~kVP~Lvd~~~g~~l~ES~aIi 210 (337)
++||....+. .|++|+.+|+.+||+|+.++|.. ++..+.|+.+..+ ...||.+.. +|..+...+++.
T Consensus 2 i~vY~ts~~g~~~~k~~~~~v~~lL~~k~I~f~eiDI~~-d~~~r~em~~~~~~~~g~~tvPQIFi--~~~~iGg~ddl~ 78 (92)
T cd03030 2 IKVYIASSSGSTEIKKRQQEVLGFLEAKKIEFEEVDISM-NEENRQWMRENVPNENGKPLPPQIFN--GDEYCGDYEAFF 78 (92)
T ss_pred EEEEEecccccHHHHHHHHHHHHHHHHCCCceEEEecCC-CHHHHHHHHHhcCCCCCCCCCCEEEE--CCEEeeCHHHHH
Confidence 5566543322 58889999999999999999964 3456778877754 489998876 788888887776
Q ss_pred H
Q 019711 211 K 211 (337)
Q Consensus 211 ~ 211 (337)
.
T Consensus 79 ~ 79 (92)
T cd03030 79 E 79 (92)
T ss_pred H
Confidence 6
No 193
>PRK10824 glutaredoxin-4; Provisional
Probab=96.10 E-value=0.012 Score=48.97 Aligned_cols=72 Identities=14% Similarity=0.061 Sum_probs=56.0
Q ss_pred Cchhhhhh-----cCCCcchhhHhHHhhccCceEEEEcCCCCCChHHHHHHcCCCCccEEEcCCCCeeeecHHHHHHHH
Q 019711 258 KPLEVWAY-----EGSPFCKVVREVLVELELPHLQRSCARGSPKRQILIEKAKHFQVPYLEDPNTGVQMFESADIVEYL 331 (337)
Q Consensus 258 k~L~l~~l-----~~sPf~~gvr~tLADl~L~~~l~~v~~g~pk~~e~~~~~p~~qVP~L~d~~~g~~l~ES~~I~~YL 331 (337)
+.+.+|.. ..||||....-.|..+++.|..+++.....-+.++.++++..+||.+-. +|..+..+.++.+..
T Consensus 15 ~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~~~~idi~~d~~~~~~l~~~sg~~TVPQIFI--~G~~IGG~ddl~~l~ 91 (115)
T PRK10824 15 NPILLYMKGSPKLPSCGFSAQAVQALSACGERFAYVDILQNPDIRAELPKYANWPTFPQLWV--DGELVGGCDIVIEMY 91 (115)
T ss_pred CCEEEEECCCCCCCCCchHHHHHHHHHHcCCCceEEEecCCHHHHHHHHHHhCCCCCCeEEE--CCEEEcChHHHHHHH
Confidence 44555533 4799999999999999999999888765445566777889999999976 477777777777653
No 194
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=96.06 E-value=0.012 Score=48.48 Aligned_cols=34 Identities=15% Similarity=0.263 Sum_probs=30.9
Q ss_pred eEEeecCCCcCHHHHHHHHHHcCCCeeEEEcCCC
Q 019711 141 IEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRN 174 (337)
Q Consensus 141 l~LY~~~~cP~c~kVr~~L~elgl~ye~~~v~~~ 174 (337)
|+||+.+.|.-|+|++.+|++.|++|+.+++-+.
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~di~~~ 34 (112)
T cd03034 1 ITIYHNPRCSKSRNALALLEEAGIEPEIVEYLKT 34 (112)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCeEEEecccC
Confidence 5899999999999999999999999999998433
No 195
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=96.01 E-value=0.013 Score=48.42 Aligned_cols=34 Identities=15% Similarity=0.262 Sum_probs=31.0
Q ss_pred eEEeecCCCcCHHHHHHHHHHcCCCeeEEEcCCC
Q 019711 141 IEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRN 174 (337)
Q Consensus 141 l~LY~~~~cP~c~kVr~~L~elgl~ye~~~v~~~ 174 (337)
|+||+.+.|.-|+|++.+|++.|++|+.+++-+.
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~di~~~ 34 (114)
T TIGR00014 1 VTIYHNPRCSKSRNTLALLEDKGIEPEVVKYLKN 34 (114)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCeEEEeccCC
Confidence 5899999999999999999999999999998433
No 196
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=95.99 E-value=0.027 Score=44.45 Aligned_cols=58 Identities=17% Similarity=0.254 Sum_probs=44.8
Q ss_pred ceEEeecCCCcCHHHHHHHHHHc-----CCCeeEEEcCCCCCCChhHHHhhCCCCCcCeEEcCCCCeeEe
Q 019711 140 PIEIYEYESCPFCRKVREIVAVL-----DLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMY 204 (337)
Q Consensus 140 ~l~LY~~~~cP~c~kVr~~L~el-----gl~ye~~~v~~~~~~~~~e~~~~np~~kVP~Lvd~~~g~~l~ 204 (337)
.|.+|..++|++|..+..+++++ ++.++.++++ +. ++..+..+-..+|.++. ||..++
T Consensus 15 ~i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~----~~-~e~a~~~~V~~vPt~vi--dG~~~~ 77 (89)
T cd03026 15 NFETYVSLSCHNCPDVVQALNLMAVLNPNIEHEMIDGA----LF-QDEVEERGIMSVPAIFL--NGELFG 77 (89)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHHCCCceEEEEEhH----hC-HHHHHHcCCccCCEEEE--CCEEEE
Confidence 38889999999999999988877 6777777762 22 45677888889999976 676544
No 197
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=95.90 E-value=0.017 Score=39.26 Aligned_cols=54 Identities=20% Similarity=0.337 Sum_probs=38.5
Q ss_pred eEEeecCCCcCHHHHHHHHH-----HcCCCeeEEEcCCCCCCChhHHHhhCCCCCcCeEEc
Q 019711 141 IEIYEYESCPFCRKVREIVA-----VLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVD 196 (337)
Q Consensus 141 l~LY~~~~cP~c~kVr~~L~-----elgl~ye~~~v~~~~~~~~~e~~~~np~~kVP~Lvd 196 (337)
+.+|...+|++|.+++..+. ..++.+..++++...+ ..+....++...+|.++.
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~P~~~~ 59 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAELALLNKGVKFEAVDVDEDPA--LEKELKRYGVGGVPTLVV 59 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHHHhhCCCcEEEEEEcCCChH--HhhHHHhCCCccccEEEE
Confidence 35677889999999999999 4567777777643222 122345788899999864
No 198
>PHA02125 thioredoxin-like protein
Probab=95.68 E-value=0.023 Score=42.97 Aligned_cols=51 Identities=18% Similarity=0.361 Sum_probs=40.1
Q ss_pred eEEeecCCCcCHHHHHHHHHHcCCCeeEEEcCCCCCCChhHHHhhCCCCCcCeEEc
Q 019711 141 IEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVD 196 (337)
Q Consensus 141 l~LY~~~~cP~c~kVr~~L~elgl~ye~~~v~~~~~~~~~e~~~~np~~kVP~Lvd 196 (337)
+.+|+.++|+.|+.+...|+.+ +++.+.|+.+ ..+++.+.+.-..+|++++
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~--~~~~~~vd~~---~~~~l~~~~~v~~~PT~~~ 52 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANV--EYTYVDVDTD---EGVELTAKHHIRSLPTLVN 52 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHH--hheEEeeeCC---CCHHHHHHcCCceeCeEEC
Confidence 7889999999999999998764 5666666422 2347888889999999984
No 199
>COG0435 ECM4 Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.67 E-value=0.012 Score=55.84 Aligned_cols=150 Identities=16% Similarity=0.200 Sum_probs=90.5
Q ss_pred CCceEEeecCCCcCHHHHHHHHHHcCCC----eeEEEc--CCCCCCChhH------------------HHh----hCCCC
Q 019711 138 EKPIEIYEYESCPFCRKVREIVAVLDLD----VLYYPC--PRNGPNFRPK------------------VLQ----MGGKK 189 (337)
Q Consensus 138 ~~~l~LY~~~~cP~c~kVr~~L~elgl~----ye~~~v--~~~~~~~~~e------------------~~~----~np~~ 189 (337)
+..+.||..-.||...|..++=+.+|++ +-.+.- +.+|..+.++ |.+ .++.-
T Consensus 49 ~GRYhLYvslaCPWAHRTLI~R~LkgLE~~Isvsvv~~~m~~~GW~F~~~~~g~t~dpl~g~~~L~~~Y~~adP~YsgRv 128 (324)
T COG0435 49 KGRYHLYVSLACPWAHRTLIFRALKGLEPVISVSVVHPLMDENGWTFDPEFPGATGDPLYGIERLSQLYTRADPDYSGRV 128 (324)
T ss_pred CCeEEEEEEecCchHHHHHHHHHHhcccccceEEEecccccCCCceEcCCCCCCCCCcccchhHHHHHHhhcCCCCCCce
Confidence 3458999999999999999988888875 222111 2455554444 111 24566
Q ss_pred CcCeEEcCCCCe-eEecchhHHHHHhhccCC------CCcchhhhhhhhhhhhhhhhh-----hccccCCccCCCCCCCC
Q 019711 190 QFPYMVDPNTGV-SMYESDNIIKYLVGKYGD------GSVPFMLSLGLLTTLTEGFAM-----IGRLGKGQSYTPAKLPP 257 (337)
Q Consensus 190 kVP~Lvd~~~g~-~l~ES~aIi~YL~~~y~~------~~~P~~~~~~al~~l~~~l~~-----~~~~~~g~~~~~~~~~~ 257 (337)
+||+|-|....+ +=.||.+||+-|...|.+ .++|..+.... +.+..++.. +.+. |-.-.+++-.+
T Consensus 129 TVPVLwDk~~~tIVnNES~eIirm~N~aFde~~~~~~dlyP~~Lr~eI-d~~n~~Iy~~vNNGVYk~--GFA~tq~aYee 205 (324)
T COG0435 129 TVPVLWDKKTQTIVNNESAEIIRMFNSAFDEFGASAVDLYPEALRTEI-DELNKWIYDTVNNGVYKA--GFATTQEAYEE 205 (324)
T ss_pred eEEEEEecCCCeeecCCcHHHHHHHHHHHHHHhhhccccCCHHHHHHH-HHHHhhhcccccCceeee--cccchHHHHHH
Confidence 899999876665 448999999988765532 26887765432 444444432 1111 11101111111
Q ss_pred Cchhhh--------hhcCCCcchhhHhHHhhccCceEEEEc
Q 019711 258 KPLEVW--------AYEGSPFCKVVREVLVELELPHLQRSC 290 (337)
Q Consensus 258 k~L~l~--------~l~~sPf~~gvr~tLADl~L~~~l~~v 290 (337)
..-.+| .+....|+.|+++|-||.-+.-.++-.
T Consensus 206 a~~~lF~~Ld~lE~~L~~~ryl~Gd~lTEAD~RLftTlvRF 246 (324)
T COG0435 206 AVKKLFEALDKLEQILSERRYLTGDQLTEADIRLFTTLVRF 246 (324)
T ss_pred HHHHHHHHHHHHHHHhhcCeeeccccchHhhhhhhheeEee
Confidence 111122 455689999999999999887665543
No 200
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=95.61 E-value=0.044 Score=42.27 Aligned_cols=51 Identities=16% Similarity=0.395 Sum_probs=38.1
Q ss_pred ceEEeecCCCcCHHHHHHHHHHcC----CCeeEEEcCCCCCCChhHHHhhCCCCCcCeEEc
Q 019711 140 PIEIYEYESCPFCRKVREIVAVLD----LDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVD 196 (337)
Q Consensus 140 ~l~LY~~~~cP~c~kVr~~L~elg----l~ye~~~v~~~~~~~~~e~~~~np~~kVP~Lvd 196 (337)
+++||+.++|+-|..++.+|+... +.++.++|+ ..+++.+.++. .||+|..
T Consensus 1 ~l~l~~k~~C~LC~~a~~~L~~~~~~~~~~l~~vDI~-----~d~~l~~~Y~~-~IPVl~~ 55 (81)
T PF05768_consen 1 TLTLYTKPGCHLCDEAKEILEEVAAEFPFELEEVDID-----EDPELFEKYGY-RIPVLHI 55 (81)
T ss_dssp -EEEEE-SSSHHHHHHHHHHHHCCTTSTCEEEEEETT-----TTHHHHHHSCT-STSEEEE
T ss_pred CEEEEcCCCCChHHHHHHHHHHHHhhcCceEEEEECC-----CCHHHHHHhcC-CCCEEEE
Confidence 479999999999999999999764 456666663 23457777775 8999965
No 201
>KOG2903 consensus Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.58 E-value=0.038 Score=52.01 Aligned_cols=152 Identities=14% Similarity=0.107 Sum_probs=85.7
Q ss_pred CceEEeecCCCcCHHHHHHHHHHcCCC----eeEE-E-cCCCCCCChh-------------------------HHHh---
Q 019711 139 KPIEIYEYESCPFCRKVREIVAVLDLD----VLYY-P-CPRNGPNFRP-------------------------KVLQ--- 184 (337)
Q Consensus 139 ~~l~LY~~~~cP~c~kVr~~L~elgl~----ye~~-~-v~~~~~~~~~-------------------------e~~~--- 184 (337)
..+-||.--.||+..|..++++.+|++ +..+ . .+.+|..+.+ |+-.
T Consensus 36 gryhLYvslaCPWAhRtLi~r~LKGL~~~i~~s~v~~~~d~~gW~F~~~~~~~nDs~~l~~~~d~~~g~k~l~elY~~~~ 115 (319)
T KOG2903|consen 36 GRYHLYVSLACPWAHRTLIVRALKGLEPAIGVSVVHWHLDDKGWRFLDEHIIINDSERLGVTPDPLNGAKRLRELYYIAS 115 (319)
T ss_pred ceEEEEEeccCcHHHHHHHHHHHcCccccceeEEeccccCCCcccCCCcccCCCchhcccCCCcccccchhHHHHHhhcC
Confidence 669999999999999999999999985 2211 1 1223332222 1111
Q ss_pred --hCCCCCcCeEEcCCCCe-eEecchhHHHHHhhccC---C-------CCcchhhhhhhhhhhhhhhhhhcccc---CCc
Q 019711 185 --MGGKKQFPYMVDPNTGV-SMYESDNIIKYLVGKYG---D-------GSVPFMLSLGLLTTLTEGFAMIGRLG---KGQ 248 (337)
Q Consensus 185 --~np~~kVP~Lvd~~~g~-~l~ES~aIi~YL~~~y~---~-------~~~P~~~~~~al~~l~~~l~~~~~~~---~g~ 248 (337)
..+.-+||+|=|....+ +=-||.+||+.+...|. . .++|..+.... +.+-.|+..-...+ -|-
T Consensus 116 p~Y~grfTVPVLWD~k~ktIVnNES~eIIr~fNs~f~ef~~~~e~~~lDL~P~~L~~~I-de~N~wvy~~INNGVYk~GF 194 (319)
T KOG2903|consen 116 PNYTGRFTVPVLWDLKTKTIVNNESSEIIRMFNSAFDEFNGIAENPVLDLYPSSLRAQI-DETNSWVYDKINNGVYKCGF 194 (319)
T ss_pred CCCCceEEEEEEEccccceeecCchHHHHHHHhhhhhhhhccccCCccccCCHHHHHHH-hhhhceecccccCceeeecc
Confidence 13556899998855544 44799999999983332 1 25666654432 33333433211000 011
Q ss_pred cCCCCCCCCCchhhh----------hhcCCCcchhhHhHHhhccCceEEEEcC
Q 019711 249 SYTPAKLPPKPLEVW----------AYEGSPFCKVVREVLVELELPHLQRSCA 291 (337)
Q Consensus 249 ~~~~~~~~~k~L~l~----------~l~~sPf~~gvr~tLADl~L~~~l~~v~ 291 (337)
....+.-....-.+| .-..+.|++|+++|.+|+.|...++..+
T Consensus 195 A~~~e~Ye~~V~~lfe~LDr~E~vL~~~~~~f~~G~~LTeaDirLy~TiIRFD 247 (319)
T KOG2903|consen 195 AEKQEAYEEEVNQLFEALDRCEDVLGKNRKYFLCGDTLTEADIRLYTTIIRFD 247 (319)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHhcccceEeeccccchhheeeeeeEEeeh
Confidence 111111111111122 2233569999999999999987776543
No 202
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=95.07 E-value=0.073 Score=43.90 Aligned_cols=68 Identities=26% Similarity=0.516 Sum_probs=48.2
Q ss_pred CCcCHHHHHHHHHHc-----CCCeeEEEcCCCCCCChhHHHhhCC--CCCcCeEEcCCC-----------C-eeEecchh
Q 019711 148 SCPFCRKVREIVAVL-----DLDVLYYPCPRNGPNFRPKVLQMGG--KKQFPYMVDPNT-----------G-VSMYESDN 208 (337)
Q Consensus 148 ~cP~c~kVr~~L~el-----gl~ye~~~v~~~~~~~~~e~~~~np--~~kVP~Lvd~~~-----------g-~~l~ES~a 208 (337)
.||.|..+.=+|..- .++++.++. +.-|.++.++-+ ++..|+||-.++ | ..|.+...
T Consensus 23 ~Cp~c~~iEGlLa~~P~l~~~ldV~rV~f----~RPR~~vi~llGE~~QslPvLVL~~~~~~~~~~~~~~~~rfi~d~~~ 98 (112)
T PF11287_consen 23 YCPHCAAIEGLLASFPDLRERLDVRRVDF----PRPRQAVIALLGEANQSLPVLVLADGAPSPDDAGSHGGRRFIDDPRR 98 (112)
T ss_pred ECCchHHHHhHHhhChhhhhcccEEEeCC----CCchHHHHHHhChhccCCCEEEeCCCCCCcccccccCCeEEeCCHHH
Confidence 499999988888654 566666654 223456665543 679999974321 1 26888999
Q ss_pred HHHHHhhccCC
Q 019711 209 IIKYLVGKYGD 219 (337)
Q Consensus 209 Ii~YL~~~y~~ 219 (337)
|+.||+++||-
T Consensus 99 I~~~La~r~g~ 109 (112)
T PF11287_consen 99 ILRYLAERHGF 109 (112)
T ss_pred HHHHHHHHcCC
Confidence 99999999984
No 203
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.63 E-value=0.081 Score=42.85 Aligned_cols=74 Identities=20% Similarity=0.442 Sum_probs=56.3
Q ss_pred CCceEEe-----ecCCCcCHHHHHHHHHHcC-CCeeEEEcCCCCCCChhHHHhhCCCCCcCeEEcCCCCeeEecchhHHH
Q 019711 138 EKPIEIY-----EYESCPFCRKVREIVAVLD-LDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIK 211 (337)
Q Consensus 138 ~~~l~LY-----~~~~cP~c~kVr~~L~elg-l~ye~~~v~~~~~~~~~e~~~~np~~kVP~Lvd~~~g~~l~ES~aIi~ 211 (337)
..++.|| .++.|.|+.++.-+|..+| ++|..++|-. ++..|+..++.+.--++|-|-. +|..+..|+ |+.
T Consensus 14 ~n~VvLFMKGtp~~P~CGFS~~~vqiL~~~g~v~~~~vnVL~-d~eiR~~lk~~s~WPT~PQLyi--~GEfvGG~D-Iv~ 89 (105)
T COG0278 14 ENPVVLFMKGTPEFPQCGFSAQAVQILSACGVVDFAYVDVLQ-DPEIRQGLKEYSNWPTFPQLYV--NGEFVGGCD-IVR 89 (105)
T ss_pred cCceEEEecCCCCCCCCCccHHHHHHHHHcCCcceeEEeecc-CHHHHhccHhhcCCCCCceeeE--CCEEeccHH-HHH
Confidence 3456677 4678999999999999999 7888888843 3557788888888889999966 787777754 554
Q ss_pred HHhh
Q 019711 212 YLVG 215 (337)
Q Consensus 212 YL~~ 215 (337)
-+.+
T Consensus 90 Em~q 93 (105)
T COG0278 90 EMYQ 93 (105)
T ss_pred HHHH
Confidence 4443
No 204
>KOG4244 consensus Failed axon connections (fax) protein/glutathione S-transferase-like protein [Signal transduction mechanisms]
Probab=94.24 E-value=0.049 Score=51.37 Aligned_cols=60 Identities=25% Similarity=0.454 Sum_probs=51.7
Q ss_pred CCCcchhhHhHHhhccCceEEEEcCCCCCChHHHHHHcCCCCccEEEcCCCCeeeecHHHHHHHHHHHhC
Q 019711 267 GSPFCKVVREVLVELELPHLQRSCARGSPKRQILIEKAKHFQVPYLEDPNTGVQMFESADIVEYLRATYA 336 (337)
Q Consensus 267 ~sPf~~gvr~tLADl~L~~~l~~v~~g~pk~~e~~~~~p~~qVP~L~d~~~g~~l~ES~~I~~YL~~~y~ 336 (337)
-||||.++...|.-..|+|+...... ..+..+|++|.++- .|..+.||.-|+.+|.++|+
T Consensus 60 LSPfClKvEt~lR~~~IpYE~~~~~~--------~~rSr~G~lPFIEL--NGe~iaDS~~I~~~L~~hf~ 119 (281)
T KOG4244|consen 60 LSPFCLKVETFLRAYDIPYEIVDCSL--------KRRSRNGTLPFIEL--NGEHIADSDLIEDRLRKHFK 119 (281)
T ss_pred CChHHHHHHHHHHHhCCCceeccccc--------eeeccCCCcceEEe--CCeeccccHHHHHHHHHHcC
Confidence 48999999999999999999987643 14556789999998 48999999999999999875
No 205
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=94.18 E-value=0.11 Score=45.08 Aligned_cols=61 Identities=18% Similarity=0.184 Sum_probs=50.1
Q ss_pred CCCcchhhHhHHhhccCceEEEEcCCCCCChHHHHHHcCC----CCccEEEcCCCCeeeecHHHHHH
Q 019711 267 GSPFCKVVREVLVELELPHLQRSCARGSPKRQILIEKAKH----FQVPYLEDPNTGVQMFESADIVE 329 (337)
Q Consensus 267 ~sPf~~gvr~tLADl~L~~~l~~v~~g~pk~~e~~~~~p~----~qVP~L~d~~~g~~l~ES~~I~~ 329 (337)
.+|||..++..|..+++.|+.+++..+....+++.++.+. .+||.+.. +|..+....++.+
T Consensus 15 t~~~C~~ak~iL~~~~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI--~G~~IGG~del~~ 79 (147)
T cd03031 15 TFEDCNNVRAILESFRVKFDERDVSMDSGFREELRELLGAELKAVSLPRVFV--DGRYLGGAEEVLR 79 (147)
T ss_pred cChhHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEE--CCEEEecHHHHHH
Confidence 6899999999999999999999998776667788887664 79999976 4666766666665
No 206
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=93.78 E-value=0.19 Score=41.11 Aligned_cols=72 Identities=15% Similarity=0.271 Sum_probs=55.7
Q ss_pred CCchhhhhhcCCCcchhhHhHHhhccCceEEEEcCCCC--CChHHHH-HHcCCCCccEEEcCCCCeeeecHHHHHHH
Q 019711 257 PKPLEVWAYEGSPFCKVVREVLVELELPHLQRSCARGS--PKRQILI-EKAKHFQVPYLEDPNTGVQMFESADIVEY 330 (337)
Q Consensus 257 ~k~L~l~~l~~sPf~~gvr~tLADl~L~~~l~~v~~g~--pk~~e~~-~~~p~~qVP~L~d~~~g~~l~ES~~I~~Y 330 (337)
+.++.+|.-..||||...+..+.++++.+.++.++..+ ...++++ +..+..+||.+.- +|.-+....+|..+
T Consensus 13 ~~~VVifSKs~C~~c~~~k~ll~~~~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI--~Gk~iGG~~dl~~l 87 (104)
T KOG1752|consen 13 ENPVVIFSKSSCPYCHRAKELLSDLGVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFI--GGKFIGGASDLMAL 87 (104)
T ss_pred cCCEEEEECCcCchHHHHHHHHHhCCCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEE--CCEEEcCHHHHHHH
Confidence 45677888889999999999999999999999988654 3455544 4667889999977 46666666666654
No 207
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=93.66 E-value=0.29 Score=40.78 Aligned_cols=64 Identities=20% Similarity=0.312 Sum_probs=39.6
Q ss_pred CCceEEeecCCCcCHHHHHHHHHHc----CCCeeEEEcCCCC--CCCh----hHHHhhCC----CCCcCeEEcCCCCe
Q 019711 138 EKPIEIYEYESCPFCRKVREIVAVL----DLDVLYYPCPRNG--PNFR----PKVLQMGG----KKQFPYMVDPNTGV 201 (337)
Q Consensus 138 ~~~l~LY~~~~cP~c~kVr~~L~el----gl~ye~~~v~~~~--~~~~----~e~~~~np----~~kVP~Lvd~~~g~ 201 (337)
..-+..|+.++||+|+.+.-.|+++ ++++-.++++... +... .+|.+... -..+|.++.=.+|.
T Consensus 24 ~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~~i~~~PT~v~~k~Gk 101 (122)
T TIGR01295 24 ETATFFIGRKTCPYCRKFSGTLSGVVAQTKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIPTSFMGTPTFVHITDGK 101 (122)
T ss_pred CcEEEEEECCCChhHHHHhHHHHHHHHhcCCcEEEEECCCccCcCcccHHHHHHHHHHcCCcccCCCCCEEEEEeCCe
Confidence 3346678899999999977666554 5666667765322 1111 25555544 34599985434665
No 208
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=93.49 E-value=0.1 Score=42.50 Aligned_cols=30 Identities=17% Similarity=0.404 Sum_probs=24.0
Q ss_pred eecCCCcCHHHHHHHHHHcCCCeeEEEcCC
Q 019711 144 YEYESCPFCRKVREIVAVLDLDVLYYPCPR 173 (337)
Q Consensus 144 Y~~~~cP~c~kVr~~L~elgl~ye~~~v~~ 173 (337)
|+.+.|.-|++++.+|++.|++|+.+++-+
T Consensus 1 Y~~~~C~t~rka~~~L~~~gi~~~~~d~~k 30 (110)
T PF03960_consen 1 YGNPNCSTCRKALKWLEENGIEYEFIDYKK 30 (110)
T ss_dssp EE-TT-HHHHHHHHHHHHTT--EEEEETTT
T ss_pred CcCCCCHHHHHHHHHHHHcCCCeEeehhhh
Confidence 889999999999999999999999999843
No 209
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=92.99 E-value=0.17 Score=50.88 Aligned_cols=67 Identities=16% Similarity=0.278 Sum_probs=49.6
Q ss_pred chhhhhhcCCCcchhhHhHHhhccCceEEEEcCCCCCChHHHHHH---------cCCCCccEEEcCCCCeeeecHHHHH
Q 019711 259 PLEVWAYEGSPFCKVVREVLVELELPHLQRSCARGSPKRQILIEK---------AKHFQVPYLEDPNTGVQMFESADIV 328 (337)
Q Consensus 259 ~L~l~~l~~sPf~~gvr~tLADl~L~~~l~~v~~g~pk~~e~~~~---------~p~~qVP~L~d~~~g~~l~ES~~I~ 328 (337)
.+++|....||||...+-.|.+.+++|+.++++.+. ...++.+. .+..+||++..+ |..+..-.++.
T Consensus 3 ~V~vys~~~Cp~C~~aK~~L~~~gi~~~~idi~~~~-~~~~~~~~~~~~~~~~~~g~~tvP~ifi~--~~~igGf~~l~ 78 (410)
T PRK12759 3 EVRIYTKTNCPFCDLAKSWFGANDIPFTQISLDDDV-KRAEFYAEVNKNILLVEEHIRTVPQIFVG--DVHIGGYDNLM 78 (410)
T ss_pred cEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCCh-hHHHHHHHHhhccccccCCCCccCeEEEC--CEEEeCchHHH
Confidence 467888899999999999999999999999998553 33444332 467899999873 44444444443
No 210
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=92.62 E-value=0.11 Score=53.63 Aligned_cols=71 Identities=13% Similarity=0.205 Sum_probs=49.6
Q ss_pred CceEEeecCCCcCHHHHHHHHHHc-----CCCeeEEEcCCCCCCChhHHHhhCCCCCcCeEEcCCCCeeEecch----hH
Q 019711 139 KPIEIYEYESCPFCRKVREIVAVL-----DLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESD----NI 209 (337)
Q Consensus 139 ~~l~LY~~~~cP~c~kVr~~L~el-----gl~ye~~~v~~~~~~~~~e~~~~np~~kVP~Lvd~~~g~~l~ES~----aI 209 (337)
..+++|..+.||||..|..++.++ +|..+.++ .+.-+++.+......||.++. +|..+++.. ++
T Consensus 119 ~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~i~~~~id-----~~~~~~~~~~~~v~~VP~~~i--~~~~~~~g~~~~~~~ 191 (515)
T TIGR03140 119 LHFETYVSLTCQNCPDVVQALNQMALLNPNISHTMID-----GALFQDEVEALGIQGVPAVFL--NGEEFHNGRMDLAEL 191 (515)
T ss_pred eEEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEE-----chhCHHHHHhcCCcccCEEEE--CCcEEEecCCCHHHH
Confidence 348999999999999999998877 34444433 234467778888889999976 565666633 34
Q ss_pred HHHHhhc
Q 019711 210 IKYLVGK 216 (337)
Q Consensus 210 i~YL~~~ 216 (337)
+..|.+.
T Consensus 192 ~~~l~~~ 198 (515)
T TIGR03140 192 LEKLEET 198 (515)
T ss_pred HHHHhhc
Confidence 4455444
No 211
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=92.44 E-value=0.12 Score=53.36 Aligned_cols=73 Identities=14% Similarity=0.173 Sum_probs=52.0
Q ss_pred CceEEeecCCCcCHHHHHHHHHHc-----CCCeeEEEcCCCCCCChhHHHhhCCCCCcCeEEcCCCCeeEecc----hhH
Q 019711 139 KPIEIYEYESCPFCRKVREIVAVL-----DLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYES----DNI 209 (337)
Q Consensus 139 ~~l~LY~~~~cP~c~kVr~~L~el-----gl~ye~~~v~~~~~~~~~e~~~~np~~kVP~Lvd~~~g~~l~ES----~aI 209 (337)
..+++|..+.||||..+..++.++ +|..+.++ .+.-+|+.+......||.++. +|..+++. ..|
T Consensus 118 ~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~~i~~~~id-----~~~~~~~~~~~~v~~VP~~~i--~~~~~~~g~~~~~~~ 190 (517)
T PRK15317 118 FHFETYVSLSCHNCPDVVQALNLMAVLNPNITHTMID-----GALFQDEVEARNIMAVPTVFL--NGEEFGQGRMTLEEI 190 (517)
T ss_pred eEEEEEEcCCCCCcHHHHHHHHHHHHhCCCceEEEEE-----chhCHhHHHhcCCcccCEEEE--CCcEEEecCCCHHHH
Confidence 348999999999999999888776 34444443 234467888888899999976 56566652 456
Q ss_pred HHHHhhccC
Q 019711 210 IKYLVGKYG 218 (337)
Q Consensus 210 i~YL~~~y~ 218 (337)
+..|.+..+
T Consensus 191 ~~~~~~~~~ 199 (517)
T PRK15317 191 LAKLDTGAA 199 (517)
T ss_pred HHHHhcccc
Confidence 666665444
No 212
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=91.85 E-value=0.79 Score=33.94 Aligned_cols=57 Identities=11% Similarity=0.205 Sum_probs=40.3
Q ss_pred ceEEeecCCCcCHHHHHHHHHH-----cCCCeeEEEcCCCCCCChhHHHhhCCCCCcCeEEcCCCCe
Q 019711 140 PIEIYEYESCPFCRKVREIVAV-----LDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGV 201 (337)
Q Consensus 140 ~l~LY~~~~cP~c~kVr~~L~e-----lgl~ye~~~v~~~~~~~~~e~~~~np~~kVP~Lvd~~~g~ 201 (337)
-+.+|..++|+.|+++...+++ .++.+-.++++. ..++.+..+...+|+++--++|.
T Consensus 13 ~ll~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~-----~~~~~~~~~v~~~P~~~~~~~g~ 74 (93)
T cd02947 13 VVVDFWAPWCGPCKAIAPVLEELAEEYPKVKFVKVDVDE-----NPELAEEYGVRSIPTFLFFKNGK 74 (93)
T ss_pred EEEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEECCC-----ChhHHHhcCcccccEEEEEECCE
Confidence 3666778899999999999988 566666666522 34577777888999874322454
No 213
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=91.82 E-value=0.43 Score=49.77 Aligned_cols=59 Identities=19% Similarity=0.203 Sum_probs=44.8
Q ss_pred ceEEeecCCCcCHHHHHHHHHH----c-CCCeeEEEcCCCCCCChhHHHhhCCCCCcCeEEcCCCCeeEec
Q 019711 140 PIEIYEYESCPFCRKVREIVAV----L-DLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYE 205 (337)
Q Consensus 140 ~l~LY~~~~cP~c~kVr~~L~e----l-gl~ye~~~v~~~~~~~~~e~~~~np~~kVP~Lvd~~~g~~l~E 205 (337)
.|++|..++||+|.++..++++ + +|..+.+++ . .-+|..+..+-..||.++. ||..+++
T Consensus 479 ~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~----~-~~~~~~~~~~v~~vP~~~i--~~~~~~~ 542 (555)
T TIGR03143 479 NIKIGVSLSCTLCPDVVLAAQRIASLNPNVEAEMIDV----S-HFPDLKDEYGIMSVPAIVV--DDQQVYF 542 (555)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCCceEEEEEC----c-ccHHHHHhCCceecCEEEE--CCEEEEe
Confidence 4889989999999998776554 4 688888876 2 2257787889999999987 5655444
No 214
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=91.44 E-value=0.25 Score=40.45 Aligned_cols=52 Identities=15% Similarity=0.375 Sum_probs=37.0
Q ss_pred ceEEe-ecCCCcCHHHHHHHHHHcC-----CCeeEEEcCCCCCCChhHHHhhCCCCCcCeEEc
Q 019711 140 PIEIY-EYESCPFCRKVREIVAVLD-----LDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVD 196 (337)
Q Consensus 140 ~l~LY-~~~~cP~c~kVr~~L~elg-----l~ye~~~v~~~~~~~~~e~~~~np~~kVP~Lvd 196 (337)
.+.+| +.+||++|+.++.+++++. +.+..++++ ..+++.+..+-..+|.++.
T Consensus 24 ~vvv~f~a~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d-----~~~~l~~~~~v~~vPt~~i 81 (113)
T cd02975 24 DLVVFSSKEGCQYCEVTKQLLEELSELSDKLKLEIYDFD-----EDKEKAEKYGVERVPTTIF 81 (113)
T ss_pred EEEEEeCCCCCCChHHHHHHHHHHHHhcCceEEEEEeCC-----cCHHHHHHcCCCcCCEEEE
Confidence 35555 5579999999999988764 334444432 2357888899999999853
No 215
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=90.83 E-value=0.48 Score=43.78 Aligned_cols=72 Identities=17% Similarity=0.319 Sum_probs=55.8
Q ss_pred CCCceEEe-----ecCCCcCHHHHHHHHHHcCCCeeEEEcCCCCCCChhHHHhhCCCCCcCeEEcCCCCeeEecchhHHH
Q 019711 137 PEKPIEIY-----EYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIK 211 (337)
Q Consensus 137 ~~~~l~LY-----~~~~cP~c~kVr~~L~elgl~ye~~~v~~~~~~~~~e~~~~np~~kVP~Lvd~~~g~~l~ES~aIi~ 211 (337)
..+++.|| .++.|.|.+++.-+|.++|++|...+|. .++..|.-.++.+---++|-|.. +|..+..++-|..
T Consensus 137 ~a~~v~lFmKG~p~~P~CGFS~~~v~iL~~~nV~~~~fdIL-~DeelRqglK~fSdWPTfPQlyI--~GEFiGGlDIl~~ 213 (227)
T KOG0911|consen 137 KAKPVMLFMKGTPEEPKCGFSRQLVGILQSHNVNYTIFDVL-TDEELRQGLKEFSDWPTFPQLYV--KGEFIGGLDILKE 213 (227)
T ss_pred ccCeEEEEecCCCCcccccccHHHHHHHHHcCCCeeEEecc-CCHHHHHHhhhhcCCCCccceeE--CCEeccCcHHHHH
Confidence 34567777 4567999999999999999999999984 34446777888888889999966 7876666544433
No 216
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=90.63 E-value=0.19 Score=41.17 Aligned_cols=42 Identities=17% Similarity=0.284 Sum_probs=35.0
Q ss_pred hhhhhhcCCCcchhhHhHHhhccCceEEEEcCCCCCChHHHH
Q 019711 260 LEVWAYEGSPFCKVVREVLVELELPHLQRSCARGSPKRQILI 301 (337)
Q Consensus 260 L~l~~l~~sPf~~gvr~tLADl~L~~~l~~v~~g~pk~~e~~ 301 (337)
+++|+...|++|+..+-.|.+.++.|+.+++........++.
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~el~ 42 (111)
T cd03036 1 LKFYEYPKCSTCRKAKKWLDEHGVDYTAIDIVEEPPSKEELK 42 (111)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCceEEecccCCcccHHHHH
Confidence 467888999999999999999999999999987665554433
No 217
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=89.64 E-value=0.88 Score=32.91 Aligned_cols=57 Identities=18% Similarity=0.251 Sum_probs=39.7
Q ss_pred hhhhhhcCCCcchhhHhHHhhc-----cCceEEEEcCCCCCChHHHHHHcCCCCccEEEcCCCCeeee
Q 019711 260 LEVWAYEGSPFCKVVREVLVEL-----ELPHLQRSCARGSPKRQILIEKAKHFQVPYLEDPNTGVQMF 322 (337)
Q Consensus 260 L~l~~l~~sPf~~gvr~tLADl-----~L~~~l~~v~~g~pk~~e~~~~~p~~qVP~L~d~~~g~~l~ 322 (337)
+.+|+..+||||......|.++ .+.+..++++. -+++.++.+-.++|.+.. +|..++
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~id~~~----~~~l~~~~~i~~vPti~i--~~~~~~ 64 (67)
T cd02973 3 IEVFVSPTCPYCPDAVQAANRIAALNPNISAEMIDAAE----FPDLADEYGVMSVPAIVI--NGKVEF 64 (67)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHhCCceEEEEEEccc----CHhHHHHcCCcccCEEEE--CCEEEE
Confidence 4567778999999998888876 34455555432 245777888778999987 354544
No 218
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=89.52 E-value=1.5 Score=33.81 Aligned_cols=74 Identities=15% Similarity=0.295 Sum_probs=47.4
Q ss_pred CceEEeecCCCcCHHHHHHHHHHc----CCCeeEEEcCCCCCCChhHHHhhCCCCCcCeEEcCCCCeeE------ecchh
Q 019711 139 KPIEIYEYESCPFCRKVREIVAVL----DLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSM------YESDN 208 (337)
Q Consensus 139 ~~l~LY~~~~cP~c~kVr~~L~el----gl~ye~~~v~~~~~~~~~e~~~~np~~kVP~Lvd~~~g~~l------~ES~a 208 (337)
.-+..|..++|+.|+..+-.++++ +-++....|+.. ..+++.+...-..+|.++--.+|..+ .+...
T Consensus 19 ~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~---~~~~l~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~ 95 (103)
T PF00085_consen 19 PVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCD---ENKELCKKYGVKSVPTIIFFKNGKEVKRYNGPRNAES 95 (103)
T ss_dssp EEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETT---TSHHHHHHTTCSSSSEEEEEETTEEEEEEESSSSHHH
T ss_pred CEEEEEeCCCCCccccccceecccccccccccccchhhhh---ccchhhhccCCCCCCEEEEEECCcEEEEEECCCCHHH
Confidence 346667778999999998777654 224555555322 22568888899999998432255432 23456
Q ss_pred HHHHHhh
Q 019711 209 IIKYLVG 215 (337)
Q Consensus 209 Ii~YL~~ 215 (337)
|..+|.+
T Consensus 96 l~~~i~~ 102 (103)
T PF00085_consen 96 LIEFIEK 102 (103)
T ss_dssp HHHHHHH
T ss_pred HHHHHHc
Confidence 7777764
No 219
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=89.49 E-value=0.87 Score=41.42 Aligned_cols=59 Identities=20% Similarity=0.297 Sum_probs=39.5
Q ss_pred ceEEeecCCCcCHHHHHHHHHHcCC---CeeEEEcCCCCCCChhHHHhhCCCCCcCeEEcCCCCe
Q 019711 140 PIEIYEYESCPFCRKVREIVAVLDL---DVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGV 201 (337)
Q Consensus 140 ~l~LY~~~~cP~c~kVr~~L~elgl---~ye~~~v~~~~~~~~~e~~~~np~~kVP~Lvd~~~g~ 201 (337)
.+.+|..++||+|..+..+++++-- .+....++.. ..++..+.++-..+|.++...+|.
T Consensus 136 ~I~~F~a~~C~~C~~~~~~l~~l~~~~~~i~~~~vD~~---~~~~~~~~~~V~~vPtl~i~~~~~ 197 (215)
T TIGR02187 136 RIEVFVTPTCPYCPYAVLMAHKFALANDKILGEMIEAN---ENPDLAEKYGVMSVPKIVINKGVE 197 (215)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhcCceEEEEEeCC---CCHHHHHHhCCccCCEEEEecCCE
Confidence 4777888999999999988887521 2333334311 234677888888999986433443
No 220
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=88.66 E-value=1.6 Score=34.19 Aligned_cols=63 Identities=14% Similarity=0.193 Sum_probs=40.1
Q ss_pred CCceEEeecCCCcCHHHHHHHHHHc----CCCeeEEEcCCCCCCChhHHHhhCCCCCcCeEEcCCCCeeE
Q 019711 138 EKPIEIYEYESCPFCRKVREIVAVL----DLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSM 203 (337)
Q Consensus 138 ~~~l~LY~~~~cP~c~kVr~~L~el----gl~ye~~~v~~~~~~~~~e~~~~np~~kVP~Lvd~~~g~~l 203 (337)
...+.+|..++|+.|+.....++++ +-.+....++.. ..+++.+...-..+|+++--++|..+
T Consensus 14 ~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d---~~~~l~~~~~v~~vPt~~i~~~g~~v 80 (97)
T cd02949 14 RLILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDID---EDQEIAEAAGIMGTPTVQFFKDKELV 80 (97)
T ss_pred CeEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECC---CCHHHHHHCCCeeccEEEEEECCeEE
Confidence 3446677889999999998888663 212444444321 23467777788899988432356543
No 221
>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised. SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.
Probab=88.53 E-value=1.6 Score=35.42 Aligned_cols=70 Identities=11% Similarity=0.042 Sum_probs=42.8
Q ss_pred CceEEeecCCCc------CHHHHHHHHHHcCCCeeEEEcCCCCCCChhHHHhhC---------CCCCcCeEEcCCCCeeE
Q 019711 139 KPIEIYEYESCP------FCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMG---------GKKQFPYMVDPNTGVSM 203 (337)
Q Consensus 139 ~~l~LY~~~~cP------~c~kVr~~L~elgl~ye~~~v~~~~~~~~~e~~~~n---------p~~kVP~Lvd~~~g~~l 203 (337)
|.|++|....+. .|.+|..+|+.++|+|+.++|.. ++..+.++.+.. +..-.|.|+. |+..+
T Consensus 1 m~I~vy~ss~sg~~~ikk~q~~v~~iL~a~kI~fe~vDIa~-~e~~r~~mr~~~g~~~~~~~~~~~lpPqiF~--~~~Y~ 77 (99)
T PF04908_consen 1 MVIKVYISSISGSREIKKRQQRVLMILEAKKIPFEEVDIAM-DEEARQWMRENAGPEEKDPGNGKPLPPQIFN--GDEYC 77 (99)
T ss_dssp -SEEEEE-SS-SSHHHHHHHHHHHHHHHHTT--EEEEETTT--HHHHHHHHHHT--CCCS-TSTT--S-EEEE--TTEEE
T ss_pred CEEEEEEecccCCHHHHHHHHHHHHHHHHcCCCcEEEeCcC-CHHHHHHHHHhccccccCCCCCCCCCCEEEe--CCEEE
Confidence 568888765443 47889999999999999999955 444566676655 2334467776 67776
Q ss_pred ecchhHHH
Q 019711 204 YESDNIIK 211 (337)
Q Consensus 204 ~ES~aIi~ 211 (337)
.+-.++..
T Consensus 78 Gdye~f~e 85 (99)
T PF04908_consen 78 GDYEDFEE 85 (99)
T ss_dssp EEHHHHHH
T ss_pred eeHHHHHH
Confidence 65555443
No 222
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=87.92 E-value=0.56 Score=37.64 Aligned_cols=45 Identities=11% Similarity=0.088 Sum_probs=36.8
Q ss_pred hhhhhhcCCCcchhhHhHHhhccCceEEEEcCCCCCChHHHHHHc
Q 019711 260 LEVWAYEGSPFCKVVREVLVELELPHLQRSCARGSPKRQILIEKA 304 (337)
Q Consensus 260 L~l~~l~~sPf~~gvr~tLADl~L~~~l~~v~~g~pk~~e~~~~~ 304 (337)
+++|+...|++|..++-.|.+.++.|+.+++........++.+..
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~~l~~~~ 45 (105)
T cd02977 1 ITIYGNPNCSTSRKALAWLEEHGIEYEFIDYLKEPPTKEELKELL 45 (105)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCCcEEEeeccCCCCHHHHHHHH
Confidence 357888999999999999999999999999987655555555544
No 223
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=87.36 E-value=2.4 Score=34.60 Aligned_cols=65 Identities=15% Similarity=0.309 Sum_probs=36.5
Q ss_pred CCceEEeecCCCcCHHHHHHHH-------HHcCCCeeEEEcCCCCC----------CChhHHHhhCCCCCcCeE--EcCC
Q 019711 138 EKPIEIYEYESCPFCRKVREIV-------AVLDLDVLYYPCPRNGP----------NFRPKVLQMGGKKQFPYM--VDPN 198 (337)
Q Consensus 138 ~~~l~LY~~~~cP~c~kVr~~L-------~elgl~ye~~~v~~~~~----------~~~~e~~~~np~~kVP~L--vd~~ 198 (337)
...+..|..++|++|++....+ +.++-.+..+.|+.... ....++.....-..+|++ ++++
T Consensus 15 k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v~~~Pt~~~~~~~ 94 (125)
T cd02951 15 KPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYRVRFTPTVIFLDPE 94 (125)
T ss_pred CcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcCCccccEEEEEcCC
Confidence 3446667788999999876433 12222344444431111 013467777778899986 4433
Q ss_pred CCee
Q 019711 199 TGVS 202 (337)
Q Consensus 199 ~g~~ 202 (337)
||..
T Consensus 95 gg~~ 98 (125)
T cd02951 95 GGKE 98 (125)
T ss_pred CCce
Confidence 2553
No 224
>PF10568 Tom37: Outer mitochondrial membrane transport complex protein; InterPro: IPR019564 Tom37 is one of the outer membrane proteins that make up the TOM complex for guiding cytosolic mitochondrial beta-barrel proteins from the cytosol across the outer mitochondrial membrane into the intramembrane space. In conjunction with Tom70, it guides peptides without an mitochondrial targeting sequence (MTS) into Tom40, the protein that forms the passage through the outer membrane []. It has homology with metaxin, also part of the outer mitochondrial membrane beta-barrel protein transport complex []. This entry represents outer mitochondrial membrane transport complex proteins Tom37 and metaxin.; GO: 0006626 protein targeting to mitochondrion, 0005741 mitochondrial outer membrane
Probab=86.63 E-value=2.2 Score=32.41 Aligned_cols=56 Identities=27% Similarity=0.246 Sum_probs=42.3
Q ss_pred CCcchhhHhHHhhccCc---eEEEEcCCCCCChHHHHHHcCCCCccEEEcCCCCeeeecHHHHHHHHH
Q 019711 268 SPFCKVVREVLVELELP---HLQRSCARGSPKRQILIEKAKHFQVPYLEDPNTGVQMFESADIVEYLR 332 (337)
Q Consensus 268 sPf~~gvr~tLADl~L~---~~l~~v~~g~pk~~e~~~~~p~~qVP~L~d~~~g~~l~ES~~I~~YL~ 332 (337)
+|-|..+...+...+.+ ++++....- .+.|.+++|+|.+ .++..+.+-..|++||.
T Consensus 14 d~ecLa~~~yl~~~~~~~~~~~vv~s~n~--------~~Sptg~LP~L~~-~~~~~vsg~~~Iv~yL~ 72 (72)
T PF10568_consen 14 DPECLAVIAYLKFAGAPEQQFKVVPSNNP--------WLSPTGELPALID-SGGTWVSGFRNIVEYLR 72 (72)
T ss_pred CHHHHHHHHHHHhCCCCCceEEEEEcCCC--------CcCCCCCCCEEEE-CCCcEEECHHHHHHhhC
Confidence 45677777777777787 777665432 2567899999999 35778889999999984
No 225
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=86.42 E-value=1.7 Score=34.27 Aligned_cols=57 Identities=18% Similarity=0.181 Sum_probs=35.4
Q ss_pred CceEEeecCCCcCHHHHHHHH-------HHcCCCeeEEEcCC-CCCCChhHHHhhCCCCCcCeEE
Q 019711 139 KPIEIYEYESCPFCRKVREIV-------AVLDLDVLYYPCPR-NGPNFRPKVLQMGGKKQFPYMV 195 (337)
Q Consensus 139 ~~l~LY~~~~cP~c~kVr~~L-------~elgl~ye~~~v~~-~~~~~~~e~~~~np~~kVP~Lv 195 (337)
.-+..|..++|++|++....+ ++++-.+..+.|+. ..+....++.+..+-..+|+++
T Consensus 13 ~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~ 77 (104)
T cd02953 13 PVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGVFGPPTYL 77 (104)
T ss_pred eEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCCCCCCEEE
Confidence 346677889999999886443 22221455554442 1222246788888889999873
No 226
>PF09635 MetRS-N: MetRS-N binding domain; InterPro: IPR018285 This entry represents the N-terminal domain of methionyl-tRNA synthetase (MetRS). This N-terminal appended domain mediates non-catalytic complex formation through its interaction with a domain in the tRNA aminoacylation cofactor Arc1p. The interacting domains of MetRS, GluRS (glutamyl-tRNA synthetase) and Arc1p form a ternary complex resembling a classical GST homo-dimer []. Domain-swapping between symmetrically related MetRS-N and Arc1p-N domains generates a 2:2 tetramer held together by van der Waals forces. This domain is necessary for formation of the aminoacyl-tRNA synthetase complex necessary for tRNA nuclear export and shuttling as part of the translational apparatus. ; PDB: 2HSN_A.
Probab=86.31 E-value=0.36 Score=40.50 Aligned_cols=31 Identities=23% Similarity=0.635 Sum_probs=15.6
Q ss_pred CCcCeEEcCCCCeeEecchhHHHHHhhccCC
Q 019711 189 KQFPYMVDPNTGVSMYESDNIIKYLVGKYGD 219 (337)
Q Consensus 189 ~kVP~Lvd~~~g~~l~ES~aIi~YL~~~y~~ 219 (337)
..-|.|.+..+|+.++|..||++||..-|-.
T Consensus 34 ~~~~~L~~~~~gF~L~e~NAIvrYl~nDF~~ 64 (122)
T PF09635_consen 34 ESGPLLKDKKSGFELFEPNAIVRYLANDFEG 64 (122)
T ss_dssp --S--EEE-S--S----HHHHHHHHTT--TT
T ss_pred cccceeeecCCceEEecccHHHHHHHhhcCC
Confidence 3458887777999999999999999998854
No 227
>KOG3027 consensus Mitochondrial outer membrane protein Metaxin 2, Metaxin 1-binding protein [Cell wall/membrane/envelope biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=86.30 E-value=1.1 Score=41.17 Aligned_cols=66 Identities=15% Similarity=0.186 Sum_probs=52.1
Q ss_pred CceEEeecCCCcCHHHHHHHHHHcCCCeeEEEcCCCCCCChhHHHhhCCCCCcCeEEcCCCCeeEecchhHHHHHhhcc
Q 019711 139 KPIEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLVGKY 217 (337)
Q Consensus 139 ~~l~LY~~~~cP~c~kVr~~L~elgl~ye~~~v~~~~~~~~~e~~~~np~~kVP~Lvd~~~g~~l~ES~aIi~YL~~~y 217 (337)
..+-||++. .|-.|..+|...|+++..+-.+ + .|| ++|.|+||.|.. +.+.+.|-..|+.+...+-
T Consensus 27 eQiLl~d~a---scLAVqtfLrMcnLPf~v~~~~----N--aef--mSP~G~vPllr~--g~~~~aef~pIV~fVeak~ 92 (257)
T KOG3027|consen 27 EQILLPDNA---SCLAVQTFLRMCNLPFNVRQRA----N--AEF--MSPGGKVPLLRI--GKTLFAEFEPIVDFVEAKG 92 (257)
T ss_pred cccccccch---hHHHHHHHHHHcCCCceeeecC----C--ccc--cCCCCCCceeee--cchhhhhhhHHHHHHHHhc
Confidence 345666653 4799999999999999988752 1 233 678899999987 6778999999999998874
No 228
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=86.24 E-value=2.9 Score=35.05 Aligned_cols=66 Identities=18% Similarity=0.385 Sum_probs=39.9
Q ss_pred eEEeecCCCcCHHHHH-------HHHHHcCCCeeEEEcCCC-CCCChhHHH----hhCCCCCcCeEE-cCCCCeeEecc
Q 019711 141 IEIYEYESCPFCRKVR-------EIVAVLDLDVLYYPCPRN-GPNFRPKVL----QMGGKKQFPYMV-DPNTGVSMYES 206 (337)
Q Consensus 141 l~LY~~~~cP~c~kVr-------~~L~elgl~ye~~~v~~~-~~~~~~e~~----~~np~~kVP~Lv-d~~~g~~l~ES 206 (337)
+..++..+|++|++.. .+.+.++-.|..+.++.. .+.....+. ++++.+.+|+++ -..+|..++.+
T Consensus 19 ll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt~vfl~~~G~~~~~~ 97 (124)
T cd02955 19 FLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGGWPLNVFLTPDLKPFFGG 97 (124)
T ss_pred EEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCEEEEECCCCCEEeee
Confidence 3446678999999874 233444556777777632 222222222 246778899873 23478888876
No 229
>PF09635 MetRS-N: MetRS-N binding domain; InterPro: IPR018285 This entry represents the N-terminal domain of methionyl-tRNA synthetase (MetRS). This N-terminal appended domain mediates non-catalytic complex formation through its interaction with a domain in the tRNA aminoacylation cofactor Arc1p. The interacting domains of MetRS, GluRS (glutamyl-tRNA synthetase) and Arc1p form a ternary complex resembling a classical GST homo-dimer []. Domain-swapping between symmetrically related MetRS-N and Arc1p-N domains generates a 2:2 tetramer held together by van der Waals forces. This domain is necessary for formation of the aminoacyl-tRNA synthetase complex necessary for tRNA nuclear export and shuttling as part of the translational apparatus. ; PDB: 2HSN_A.
Probab=85.62 E-value=0.33 Score=40.73 Aligned_cols=30 Identities=33% Similarity=0.640 Sum_probs=14.9
Q ss_pred CCccEEEcCCCCeeeecHHHHHHHHHHHhC
Q 019711 307 FQVPYLEDPNTGVQMFESADIVEYLRATYA 336 (337)
Q Consensus 307 ~qVP~L~d~~~g~~l~ES~~I~~YL~~~y~ 336 (337)
...|.|.+..+|+.++|.+||++||..-|.
T Consensus 34 ~~~~~L~~~~~gF~L~e~NAIvrYl~nDF~ 63 (122)
T PF09635_consen 34 ESGPLLKDKKSGFELFEPNAIVRYLANDFE 63 (122)
T ss_dssp --S--EEE-S--S----HHHHHHHHTT--T
T ss_pred cccceeeecCCceEEecccHHHHHHHhhcC
Confidence 456899888899999999999999976553
No 230
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=85.36 E-value=2.2 Score=32.88 Aligned_cols=61 Identities=13% Similarity=0.123 Sum_probs=39.9
Q ss_pred ceEEeecCCCcCHHHHHHHHHHc----CCCeeEEEcCCCCCCChhHHHhhCCCCCcCeEEcCCCCeeE
Q 019711 140 PIEIYEYESCPFCRKVREIVAVL----DLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSM 203 (337)
Q Consensus 140 ~l~LY~~~~cP~c~kVr~~L~el----gl~ye~~~v~~~~~~~~~e~~~~np~~kVP~Lvd~~~g~~l 203 (337)
-+..|..++|+.|++....|+++ +..+....++.. ..+++.+..+-..+|+++--++|..+
T Consensus 17 v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~---~~~~~~~~~~i~~~Pt~~~~~~g~~~ 81 (97)
T cd02984 17 LVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAE---ELPEISEKFEITAVPTFVFFRNGTIV 81 (97)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccc---cCHHHHHhcCCccccEEEEEECCEEE
Confidence 35567788999999998888764 334556665422 23467677778889987432356543
No 231
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=85.00 E-value=4.5 Score=30.83 Aligned_cols=58 Identities=16% Similarity=0.231 Sum_probs=35.3
Q ss_pred eEEeecCCCcCHHHHHHHHHHc----CCCeeEEEcCCCCCCChhHHHhhCCCCCcCeEEcCCCCe
Q 019711 141 IEIYEYESCPFCRKVREIVAVL----DLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGV 201 (337)
Q Consensus 141 l~LY~~~~cP~c~kVr~~L~el----gl~ye~~~v~~~~~~~~~e~~~~np~~kVP~Lvd~~~g~ 201 (337)
+..|..++|+.|+.+...++.+ +-.+....++.. ..+++.+..+-..+|.++--++|.
T Consensus 18 vi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~---~~~~~~~~~~v~~~P~~~~~~~g~ 79 (101)
T TIGR01068 18 LVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVD---ENPDIAAKYGIRSIPTLLLFKNGK 79 (101)
T ss_pred EEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECC---CCHHHHHHcCCCcCCEEEEEeCCc
Confidence 4455667999999997777654 322444444311 224567777888999874322443
No 232
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=84.82 E-value=0.94 Score=36.05 Aligned_cols=66 Identities=15% Similarity=0.183 Sum_probs=35.9
Q ss_pred CCCceEEeecCCCcCHHHHHHHHHHc-------CCCeeEEEcCCCCCC-----------------ChhHHHhhCCCCCcC
Q 019711 137 PEKPIEIYEYESCPFCRKVREIVAVL-------DLDVLYYPCPRNGPN-----------------FRPKVLQMGGKKQFP 192 (337)
Q Consensus 137 ~~~~l~LY~~~~cP~c~kVr~~L~el-------gl~ye~~~v~~~~~~-----------------~~~e~~~~np~~kVP 192 (337)
.+..+.+|..++||+|++....+... +..+..+.++..... ...++.+..+-...|
T Consensus 5 ~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~gtP 84 (112)
T PF13098_consen 5 GKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVNGTP 84 (112)
T ss_dssp SSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--SSS
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCCccC
Confidence 34457778889999999997777631 113455555321111 123566777788899
Q ss_pred eEEcC-CCCee
Q 019711 193 YMVDP-NTGVS 202 (337)
Q Consensus 193 ~Lvd~-~~g~~ 202 (337)
+++-- ++|..
T Consensus 85 t~~~~d~~G~~ 95 (112)
T PF13098_consen 85 TIVFLDKDGKI 95 (112)
T ss_dssp EEEECTTTSCE
T ss_pred EEEEEcCCCCE
Confidence 88432 35653
No 233
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=84.08 E-value=1.1 Score=36.83 Aligned_cols=35 Identities=14% Similarity=0.375 Sum_probs=31.2
Q ss_pred hhhhhhcCCCcchhhHhHHhhccCceEEEEcCCCC
Q 019711 260 LEVWAYEGSPFCKVVREVLVELELPHLQRSCARGS 294 (337)
Q Consensus 260 L~l~~l~~sPf~~gvr~tLADl~L~~~l~~v~~g~ 294 (337)
+++|+...|++|..+.-.|.+.++.|+.+++....
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~gi~~~~idi~~~~ 36 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEHQIPFEERNLFKQP 36 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCceEEEecCCCc
Confidence 56888999999999999999999999999986553
No 234
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=83.54 E-value=1 Score=36.99 Aligned_cols=47 Identities=13% Similarity=0.147 Sum_probs=37.1
Q ss_pred hhhhhhcCCCcchhhHhHHhhccCceEEEEcCCCCCC---hHHHHHHcCC
Q 019711 260 LEVWAYEGSPFCKVVREVLVELELPHLQRSCARGSPK---RQILIEKAKH 306 (337)
Q Consensus 260 L~l~~l~~sPf~~gvr~tLADl~L~~~l~~v~~g~pk---~~e~~~~~p~ 306 (337)
+++|+...|++|+.+.-.|.+.++.|+.+++...... ..+|++..+.
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~el~~l~~~~~~ 50 (117)
T TIGR01617 1 IKVYGSPNCTTCKKARRWLEANGIEYQFIDIGEDGPTREELLDILSLLED 50 (117)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCceEEEecCCChhhHHHHHHHHHHcCC
Confidence 3578889999999999999999999999999765443 4445555554
No 235
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=83.46 E-value=1 Score=38.08 Aligned_cols=34 Identities=15% Similarity=0.348 Sum_probs=30.5
Q ss_pred hhhhhhcCCCcchhhHhHHhhccCceEEEEcCCC
Q 019711 260 LEVWAYEGSPFCKVVREVLVELELPHLQRSCARG 293 (337)
Q Consensus 260 L~l~~l~~sPf~~gvr~tLADl~L~~~l~~v~~g 293 (337)
+++|+...|++|..++-.|.+.++.|+.+++...
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~gi~~~~idi~~~ 35 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEHDIPFTERNIFSS 35 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCCcEEeeccCC
Confidence 5688999999999999999999999999988644
No 236
>PTZ00051 thioredoxin; Provisional
Probab=80.98 E-value=1.7 Score=33.66 Aligned_cols=59 Identities=12% Similarity=0.094 Sum_probs=38.0
Q ss_pred CceEEeecCCCcCHHHHHHHHHHc-----CCCeeEEEcCCCCCCChhHHHhhCCCCCcCeEEcCCCCee
Q 019711 139 KPIEIYEYESCPFCRKVREIVAVL-----DLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVS 202 (337)
Q Consensus 139 ~~l~LY~~~~cP~c~kVr~~L~el-----gl~ye~~~v~~~~~~~~~e~~~~np~~kVP~Lvd~~~g~~ 202 (337)
.-+..|..++|+.|++....++.+ ++.+-.++++ ...++.+..+-..+|+++.-.+|..
T Consensus 20 ~vli~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~-----~~~~~~~~~~v~~~Pt~~~~~~g~~ 83 (98)
T PTZ00051 20 LVIVDFYAEWCGPCKRIAPFYEECSKEYTKMVFVKVDVD-----ELSEVAEKENITSMPTFKVFKNGSV 83 (98)
T ss_pred eEEEEEECCCCHHHHHHhHHHHHHHHHcCCcEEEEEECc-----chHHHHHHCCCceeeEEEEEeCCeE
Confidence 335567778999999998877664 3333333331 2346777788889998843235643
No 237
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=80.92 E-value=5.7 Score=31.46 Aligned_cols=50 Identities=10% Similarity=0.201 Sum_probs=33.2
Q ss_pred eEEeecCCCcCHHHHHHHHHHc------------CCCeeEEEcCCCCCCChhHHHhhCCCCCcCeEE
Q 019711 141 IEIYEYESCPFCRKVREIVAVL------------DLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMV 195 (337)
Q Consensus 141 l~LY~~~~cP~c~kVr~~L~el------------gl~ye~~~v~~~~~~~~~e~~~~np~~kVP~Lv 195 (337)
+..|..++|+.|++..-.++++ ++.+-.++|+. .+++.+..+-..+|.|+
T Consensus 22 lv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~-----~~~l~~~~~v~~~Ptl~ 83 (108)
T cd02996 22 LVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDK-----ESDIADRYRINKYPTLK 83 (108)
T ss_pred EEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCC-----CHHHHHhCCCCcCCEEE
Confidence 5556678999999988777543 12333344421 24677788889999985
No 238
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=80.88 E-value=5.7 Score=31.57 Aligned_cols=58 Identities=12% Similarity=0.002 Sum_probs=44.9
Q ss_pred cchhhHhHHhhccCceEEEEcCCCCCChHHHHHHcCC----CCccEEEcCCCCeeeecHHHHHH
Q 019711 270 FCKVVREVLVELELPHLQRSCARGSPKRQILIEKAKH----FQVPYLEDPNTGVQMFESADIVE 329 (337)
Q Consensus 270 f~~gvr~tLADl~L~~~l~~v~~g~pk~~e~~~~~p~----~qVP~L~d~~~g~~l~ES~~I~~ 329 (337)
-|..+.-.|...+|.|+.+++..+...++++.++.+. ..||.+.- ++..+.+..++..
T Consensus 18 ~~~~v~~lL~~k~I~f~eiDI~~d~~~r~em~~~~~~~~g~~tvPQIFi--~~~~iGg~ddl~~ 79 (92)
T cd03030 18 RQQEVLGFLEAKKIEFEEVDISMNEENRQWMRENVPNENGKPLPPQIFN--GDEYCGDYEAFFE 79 (92)
T ss_pred HHHHHHHHHHHCCCceEEEecCCCHHHHHHHHHhcCCCCCCCCCCEEEE--CCEEeeCHHHHHH
Confidence 4666778899999999999999877777777888654 79998865 3666777666655
No 239
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=80.57 E-value=7.6 Score=30.99 Aligned_cols=57 Identities=18% Similarity=0.288 Sum_probs=33.6
Q ss_pred CCCceEEeecCCCcCHHHHHHHHHHc-----CCCeeEEEcCCCCCCChhHHH-hhCCCCCcCeEE
Q 019711 137 PEKPIEIYEYESCPFCRKVREIVAVL-----DLDVLYYPCPRNGPNFRPKVL-QMGGKKQFPYMV 195 (337)
Q Consensus 137 ~~~~l~LY~~~~cP~c~kVr~~L~el-----gl~ye~~~v~~~~~~~~~e~~-~~np~~kVP~Lv 195 (337)
...-+..|..++||.|++..-.++++ +-.+....|+...+ . ..+. +.++-..+|.++
T Consensus 21 ~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~-~-~~~~~~~~~v~~~Pti~ 83 (109)
T cd02993 21 NQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGE-Q-REFAKEELQLKSFPTIL 83 (109)
T ss_pred CCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCcc-c-hhhHHhhcCCCcCCEEE
Confidence 34457778889999999887666554 22233333321111 1 1333 356788999874
No 240
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=79.95 E-value=8.8 Score=30.88 Aligned_cols=58 Identities=10% Similarity=0.147 Sum_probs=35.0
Q ss_pred CceEEeecCCCcCHHHHHHHHHHc-------CCCeeEEEcCCCCCCChhHHHhhCCCCCcCeEEcCCCCe
Q 019711 139 KPIEIYEYESCPFCRKVREIVAVL-------DLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGV 201 (337)
Q Consensus 139 ~~l~LY~~~~cP~c~kVr~~L~el-------gl~ye~~~v~~~~~~~~~e~~~~np~~kVP~Lvd~~~g~ 201 (337)
.-+..|..++|+.|+...-.++++ ++.+-.++++. .+++.+..+-..+|.++--++|.
T Consensus 26 ~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~-----~~~l~~~~~V~~~Pt~~i~~~g~ 90 (111)
T cd02963 26 PYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGH-----ERRLARKLGAHSVPAIVGIINGQ 90 (111)
T ss_pred eEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccc-----cHHHHHHcCCccCCEEEEEECCE
Confidence 345567778999998776555433 23333344321 23566777889999884222554
No 241
>PRK10996 thioredoxin 2; Provisional
Probab=79.56 E-value=12 Score=31.48 Aligned_cols=63 Identities=11% Similarity=0.073 Sum_probs=39.6
Q ss_pred CCceEEeecCCCcCHHHHHHHHHHc----CCCeeEEEcCCCCCCChhHHHhhCCCCCcCeEEcCCCCeeE
Q 019711 138 EKPIEIYEYESCPFCRKVREIVAVL----DLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSM 203 (337)
Q Consensus 138 ~~~l~LY~~~~cP~c~kVr~~L~el----gl~ye~~~v~~~~~~~~~e~~~~np~~kVP~Lvd~~~g~~l 203 (337)
..-+..|.-++|+.|+...-.++++ +-.+....++.. ..+++.+...-..+|.++.-++|..+
T Consensus 53 k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~---~~~~l~~~~~V~~~Ptlii~~~G~~v 119 (139)
T PRK10996 53 LPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTE---AERELSARFRIRSIPTIMIFKNGQVV 119 (139)
T ss_pred CeEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCC---CCHHHHHhcCCCccCEEEEEECCEEE
Confidence 3345667778999999876666553 334555555321 23567778888999988432366543
No 242
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=79.26 E-value=2.5 Score=34.45 Aligned_cols=64 Identities=9% Similarity=0.125 Sum_probs=41.2
Q ss_pred CceEEeecCCCcCHHHHHHHHHHcCC---CeeEEEcCCCCCCChhHHHhhCCCCCcCeEEcCCCCeeEec
Q 019711 139 KPIEIYEYESCPFCRKVREIVAVLDL---DVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYE 205 (337)
Q Consensus 139 ~~l~LY~~~~cP~c~kVr~~L~elgl---~ye~~~v~~~~~~~~~e~~~~np~~kVP~Lvd~~~g~~l~E 205 (337)
.-+..|..++|+.|+.+.-.++++.- .+..+.|+. + ..+++.+...-..+|+++-=.+|..+..
T Consensus 24 ~vvV~f~a~~c~~C~~~~p~l~~la~~~~~i~f~~Vd~--~-~~~~l~~~~~v~~vPt~l~fk~G~~v~~ 90 (113)
T cd02989 24 RVVCHFYHPEFFRCKIMDKHLEILAKKHLETKFIKVNA--E-KAPFLVEKLNIKVLPTVILFKNGKTVDR 90 (113)
T ss_pred cEEEEEECCCCccHHHHHHHHHHHHHHcCCCEEEEEEc--c-cCHHHHHHCCCccCCEEEEEECCEEEEE
Confidence 34556677899999999888877421 234444431 1 2346778889999999853236765543
No 243
>PHA02278 thioredoxin-like protein
Probab=78.78 E-value=8.3 Score=31.08 Aligned_cols=62 Identities=15% Similarity=0.285 Sum_probs=39.2
Q ss_pred eEEeecCCCcCHHHHHHHHHHc----C--CCeeEEEcCCCCCCChhHHHhhCCCCCcCeEEcCCCCeeE
Q 019711 141 IEIYEYESCPFCRKVREIVAVL----D--LDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSM 203 (337)
Q Consensus 141 l~LY~~~~cP~c~kVr~~L~el----g--l~ye~~~v~~~~~~~~~e~~~~np~~kVP~Lvd~~~g~~l 203 (337)
+.-|..++|+.|+...-.++++ + +.+-.++++.... ..+++.+...-..+|+++-=.+|..+
T Consensus 18 vV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~-d~~~l~~~~~I~~iPT~i~fk~G~~v 85 (103)
T PHA02278 18 IVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDV-DREKAVKLFDIMSTPVLIGYKDGQLV 85 (103)
T ss_pred EEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCcccc-ccHHHHHHCCCccccEEEEEECCEEE
Confidence 4446678999999888777665 2 2344445432211 14567788888899998533367644
No 244
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=78.20 E-value=17 Score=28.17 Aligned_cols=58 Identities=14% Similarity=0.154 Sum_probs=35.1
Q ss_pred ceEEeecCCCcCHHHHHHHHHHc-----CCCeeEEEcCCCCCCChhHHHhhCCCCCcCeEEcCCCC
Q 019711 140 PIEIYEYESCPFCRKVREIVAVL-----DLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTG 200 (337)
Q Consensus 140 ~l~LY~~~~cP~c~kVr~~L~el-----gl~ye~~~v~~~~~~~~~e~~~~np~~kVP~Lvd~~~g 200 (337)
.+..|..++|+.|+...-.++++ +..+....++-. ..+++.+...-..+|.++--.+|
T Consensus 19 ~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~---~~~~~~~~~~i~~~Pt~~~~~~g 81 (101)
T cd02994 19 WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVT---QEPGLSGRFFVTALPTIYHAKDG 81 (101)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEcc---CCHhHHHHcCCcccCEEEEeCCC
Confidence 35566778999999887776654 223333333211 12356667778899988432244
No 245
>PRK09381 trxA thioredoxin; Provisional
Probab=78.15 E-value=8.5 Score=30.40 Aligned_cols=61 Identities=13% Similarity=0.137 Sum_probs=36.0
Q ss_pred ceEEeecCCCcCHHHHHHHHHHc----CCCeeEEEcCCCCCCChhHHHhhCCCCCcCeEEcCCCCeeE
Q 019711 140 PIEIYEYESCPFCRKVREIVAVL----DLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSM 203 (337)
Q Consensus 140 ~l~LY~~~~cP~c~kVr~~L~el----gl~ye~~~v~~~~~~~~~e~~~~np~~kVP~Lvd~~~g~~l 203 (337)
-+..|..++||.|+...-.++++ +-.+....++... .+++.+..+-..+|.++--++|..+
T Consensus 24 vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~---~~~~~~~~~v~~~Pt~~~~~~G~~~ 88 (109)
T PRK09381 24 ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQ---NPGTAPKYGIRGIPTLLLFKNGEVA 88 (109)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCC---ChhHHHhCCCCcCCEEEEEeCCeEE
Confidence 35556678999999987666553 2223444443211 2345566677899988432366543
No 246
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=77.38 E-value=3.7 Score=38.10 Aligned_cols=27 Identities=19% Similarity=0.516 Sum_probs=22.2
Q ss_pred CCCCceEEeecCCCcCHHHHHHHHHHc
Q 019711 136 RPEKPIEIYEYESCPFCRKVREIVAVL 162 (337)
Q Consensus 136 ~~~~~l~LY~~~~cP~c~kVr~~L~el 162 (337)
.....|.+|..+.||||+|...-+.++
T Consensus 106 ~~k~~I~vFtDp~CpyCkkl~~~l~~~ 132 (232)
T PRK10877 106 QEKHVITVFTDITCGYCHKLHEQMKDY 132 (232)
T ss_pred CCCEEEEEEECCCChHHHHHHHHHHHH
Confidence 445568889999999999998888775
No 247
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=76.73 E-value=6.8 Score=32.16 Aligned_cols=52 Identities=10% Similarity=0.177 Sum_probs=30.6
Q ss_pred eEEeecCCCcCHHHHHHHHHH------cCCCeeEEEcCCCCCCChhHHHhhCCCC-CcCeEE
Q 019711 141 IEIYEYESCPFCRKVREIVAV------LDLDVLYYPCPRNGPNFRPKVLQMGGKK-QFPYMV 195 (337)
Q Consensus 141 l~LY~~~~cP~c~kVr~~L~e------lgl~ye~~~v~~~~~~~~~e~~~~np~~-kVP~Lv 195 (337)
+..|...+|+.|++..-.+.+ .+..|..+.++...+... .+.+..+ .+|.++
T Consensus 23 lV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~---~~~~~~g~~vPt~~ 81 (117)
T cd02959 23 MLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEPKD---EEFSPDGGYIPRIL 81 (117)
T ss_pred EEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCchh---hhcccCCCccceEE
Confidence 455667899999999776665 234555566543322111 2333333 499874
No 248
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=76.06 E-value=5.4 Score=35.54 Aligned_cols=35 Identities=20% Similarity=0.593 Sum_probs=25.2
Q ss_pred CCCceEEeecCCCcCHHHHHHHHHHc--CCCeeEEEc
Q 019711 137 PEKPIEIYEYESCPFCRKVREIVAVL--DLDVLYYPC 171 (337)
Q Consensus 137 ~~~~l~LY~~~~cP~c~kVr~~L~el--gl~ye~~~v 171 (337)
....+.+|..+.||||++....+.+. ++.+.++.+
T Consensus 77 ~~~~i~~f~D~~Cp~C~~~~~~l~~~~~~v~v~~~~~ 113 (197)
T cd03020 77 GKRVVYVFTDPDCPYCRKLEKELKPNADGVTVRIFPV 113 (197)
T ss_pred CCEEEEEEECCCCccHHHHHHHHhhccCceEEEEEEc
Confidence 45568888889999999999988753 444444443
No 249
>PRK12559 transcriptional regulator Spx; Provisional
Probab=75.90 E-value=3 Score=35.31 Aligned_cols=34 Identities=9% Similarity=0.224 Sum_probs=30.2
Q ss_pred hhhhhhcCCCcchhhHhHHhhccCceEEEEcCCC
Q 019711 260 LEVWAYEGSPFCKVVREVLVELELPHLQRSCARG 293 (337)
Q Consensus 260 L~l~~l~~sPf~~gvr~tLADl~L~~~l~~v~~g 293 (337)
+++|+...|++|....-.|.+.++.|+.+++...
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~gi~~~~~di~~~ 35 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEENQIDYTEKNIVSN 35 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCCeEEEEeeCC
Confidence 5688899999999999999999999999987644
No 250
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=75.21 E-value=14 Score=29.24 Aligned_cols=63 Identities=10% Similarity=0.090 Sum_probs=37.3
Q ss_pred eEEeecCCCcCHHHHHHHHHHcCC---CeeEEEcCCCCCCChhHHHhhCCCCCcCeEEcCCCCeeE
Q 019711 141 IEIYEYESCPFCRKVREIVAVLDL---DVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSM 203 (337)
Q Consensus 141 l~LY~~~~cP~c~kVr~~L~elgl---~ye~~~v~~~~~~~~~e~~~~np~~kVP~Lvd~~~g~~l 203 (337)
+..|..+||+.|+...-.++++-- ++....|+........++.+...-..+|.++--.+|..+
T Consensus 19 vv~F~a~wC~~C~~~~p~l~~la~~~~~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~G~~v 84 (103)
T cd02985 19 VLEFALKHSGPSVKIYPTMVKLSRTCNDVVFLLVNGDENDSTMELCRREKIIEVPHFLFYKDGEKI 84 (103)
T ss_pred EEEEECCCCHhHHHHhHHHHHHHHHCCCCEEEEEECCCChHHHHHHHHcCCCcCCEEEEEeCCeEE
Confidence 455667899999988777765411 233334431111122467778888899987432356543
No 251
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=75.19 E-value=12 Score=31.01 Aligned_cols=69 Identities=19% Similarity=0.215 Sum_probs=44.1
Q ss_pred CCCcchhhHhHHh---hccCceEEEEcCCCCCChHHHHHHcC--CCCccEEEcCCCC------------eeeecHHHHHH
Q 019711 267 GSPFCKVVREVLV---ELELPHLQRSCARGSPKRQILIEKAK--HFQVPYLEDPNTG------------VQMFESADIVE 329 (337)
Q Consensus 267 ~sPf~~gvr~tLA---Dl~L~~~l~~v~~g~pk~~e~~~~~p--~~qVP~L~d~~~g------------~~l~ES~~I~~ 329 (337)
.||.|+...=.|+ ++.-..++..++... -+++..+..+ +...|+|+-+++. .-+.+...|+.
T Consensus 23 ~Cp~c~~iEGlLa~~P~l~~~ldV~rV~f~R-PR~~vi~llGE~~QslPvLVL~~~~~~~~~~~~~~~~rfi~d~~~I~~ 101 (112)
T PF11287_consen 23 YCPHCAAIEGLLASFPDLRERLDVRRVDFPR-PRQAVIALLGEANQSLPVLVLADGAPSPDDAGSHGGRRFIDDPRRILR 101 (112)
T ss_pred ECCchHHHHhHHhhChhhhhcccEEEeCCCC-chHHHHHHhChhccCCCEEEeCCCCCCcccccccCCeEEeCCHHHHHH
Confidence 3777775544443 333344555565544 3555666554 5679999753322 24889999999
Q ss_pred HHHHHhC
Q 019711 330 YLRATYA 336 (337)
Q Consensus 330 YL~~~y~ 336 (337)
||.++|+
T Consensus 102 ~La~r~g 108 (112)
T PF11287_consen 102 YLAERHG 108 (112)
T ss_pred HHHHHcC
Confidence 9999997
No 252
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=74.41 E-value=3.6 Score=34.81 Aligned_cols=34 Identities=12% Similarity=0.285 Sum_probs=30.7
Q ss_pred hhhhhhcCCCcchhhHhHHhhccCceEEEEcCCC
Q 019711 260 LEVWAYEGSPFCKVVREVLVELELPHLQRSCARG 293 (337)
Q Consensus 260 L~l~~l~~sPf~~gvr~tLADl~L~~~l~~v~~g 293 (337)
+++|+...|++|+..+-.|.+.++.|+.+++...
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~~i~~~~~d~~~~ 35 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNAHQLSYKEQNLGKE 35 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHHcCCCeEEEECCCC
Confidence 5688999999999999999999999999998654
No 253
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=73.79 E-value=6.6 Score=31.03 Aligned_cols=59 Identities=14% Similarity=0.068 Sum_probs=36.3
Q ss_pred ceEEeecCCCcCHHHHHHHHHHc----C-CCeeEEEcCCCCCCChhHHHhhCCCCCcCeEEcCCCCee
Q 019711 140 PIEIYEYESCPFCRKVREIVAVL----D-LDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVS 202 (337)
Q Consensus 140 ~l~LY~~~~cP~c~kVr~~L~el----g-l~ye~~~v~~~~~~~~~e~~~~np~~kVP~Lvd~~~g~~ 202 (337)
-+..|..++|+.|+...-.++.+ + -.+....++.. .++..+.+.-..+|.++--.+|..
T Consensus 20 vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d----~~~~~~~~~v~~~Pt~~~~~~g~~ 83 (102)
T cd02948 20 TVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD----TIDTLKRYRGKCEPTFLFYKNGEL 83 (102)
T ss_pred EEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC----CHHHHHHcCCCcCcEEEEEECCEE
Confidence 35557778999999987777654 2 11333333222 235677788889998742235654
No 254
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=73.45 E-value=17 Score=30.84 Aligned_cols=63 Identities=16% Similarity=0.172 Sum_probs=36.5
Q ss_pred ceEEeecCCCcCHHHHHHHHHHc----CCCeeEEEcCCCCCCChhHHHhhCCCCCcCeEE-cCCCCeeE
Q 019711 140 PIEIYEYESCPFCRKVREIVAVL----DLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMV-DPNTGVSM 203 (337)
Q Consensus 140 ~l~LY~~~~cP~c~kVr~~L~el----gl~ye~~~v~~~~~~~~~e~~~~np~~kVP~Lv-d~~~g~~l 203 (337)
-+..|.-.||+.|++..-.++++ +-.+.++.|+-..+. ..++.+...-..+|.++ -..+|..+
T Consensus 23 vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~-~~~~~~~~~V~~iPt~v~~~~~G~~v 90 (142)
T cd02950 23 TLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPK-WLPEIDRYRVDGIPHFVFLDREGNEE 90 (142)
T ss_pred EEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcc-cHHHHHHcCCCCCCEEEEECCCCCEE
Confidence 35556677999999888777654 222333333212221 23566777888999873 22256543
No 255
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=73.20 E-value=13 Score=29.82 Aligned_cols=61 Identities=10% Similarity=0.113 Sum_probs=37.9
Q ss_pred eEEeecCCCcCHHHHHHHHHHcCCC---eeEEEcCCCCCCChhHHHhhCCCCCcCeEEcCCCCeeEec
Q 019711 141 IEIYEYESCPFCRKVREIVAVLDLD---VLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYE 205 (337)
Q Consensus 141 l~LY~~~~cP~c~kVr~~L~elgl~---ye~~~v~~~~~~~~~e~~~~np~~kVP~Lvd~~~g~~l~E 205 (337)
+..|..++|+.|+.+.-.++++--. +....|+. +.. ++.+...-..+|+++--.+|..+..
T Consensus 28 vv~F~a~~c~~C~~l~~~l~~la~~~~~v~f~~vd~--~~~--~l~~~~~i~~~Pt~~~f~~G~~v~~ 91 (113)
T cd02957 28 VVHFYEPGFPRCKILDSHLEELAAKYPETKFVKINA--EKA--FLVNYLDIKVLPTLLVYKNGELIDN 91 (113)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEEc--hhh--HHHHhcCCCcCCEEEEEECCEEEEE
Confidence 4556678999999988888765221 23333421 111 5677778889999853336765544
No 256
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=73.09 E-value=19 Score=37.55 Aligned_cols=53 Identities=9% Similarity=0.002 Sum_probs=36.8
Q ss_pred chhhhhhcCCCcchhhHhHHhh----c-cCceEEEEcCCCCCChHHHHHHcCCCCccEEEcC
Q 019711 259 PLEVWAYEGSPFCKVVREVLVE----L-ELPHLQRSCARGSPKRQILIEKAKHFQVPYLEDP 315 (337)
Q Consensus 259 ~L~l~~l~~sPf~~gvr~tLAD----l-~L~~~l~~v~~g~pk~~e~~~~~p~~qVP~L~d~ 315 (337)
.+++|....||||-.+...+.+ . ++.++++.+.. -+++.++.+-..||.++.+
T Consensus 479 ~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~----~~~~~~~~~v~~vP~~~i~ 536 (555)
T TIGR03143 479 NIKIGVSLSCTLCPDVVLAAQRIASLNPNVEAEMIDVSH----FPDLKDEYGIMSVPAIVVD 536 (555)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCCceEEEEECcc----cHHHHHhCCceecCEEEEC
Confidence 3667766789999876554433 3 46666666543 3688888888889999873
No 257
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=72.78 E-value=4.2 Score=30.61 Aligned_cols=54 Identities=13% Similarity=0.163 Sum_probs=36.5
Q ss_pred CceEEeecCCCcCHHHHHHHHHHc------CCCeeEEEcCCCCCCChhHHHhhCCCCCcCeEE
Q 019711 139 KPIEIYEYESCPFCRKVREIVAVL------DLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMV 195 (337)
Q Consensus 139 ~~l~LY~~~~cP~c~kVr~~L~el------gl~ye~~~v~~~~~~~~~e~~~~np~~kVP~Lv 195 (337)
.-+.+|.-++|+.|++....+++. +-.+....++.. ...++.+..+-..+|.++
T Consensus 17 ~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~---~~~~~~~~~~i~~~Pt~~ 76 (101)
T cd02961 17 DVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCT---ANNDLCSEYGVRGYPTIK 76 (101)
T ss_pred cEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeecc---chHHHHHhCCCCCCCEEE
Confidence 457777888999999988777653 223444444311 235677778888999883
No 258
>COG3011 Predicted thiol-disulfide oxidoreductase [General function prediction only]
Probab=72.74 E-value=27 Score=30.02 Aligned_cols=77 Identities=14% Similarity=0.103 Sum_probs=50.3
Q ss_pred CceEEeecCCCcCHHHHHHHHHHcCCCeeEEEcCCCCCCChhHHHhhCCCCCc-Ce--EEcCCCCeeEecchhHHHHHhh
Q 019711 139 KPIEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQF-PY--MVDPNTGVSMYESDNIIKYLVG 215 (337)
Q Consensus 139 ~~l~LY~~~~cP~c~kVr~~L~elgl~ye~~~v~~~~~~~~~e~~~~np~~kV-P~--Lvd~~~g~~l~ES~aIi~YL~~ 215 (337)
.+++++..-.||.|.....+|...+-.-.+...+.+++. ...+++..|...- +- +.+ ++|....+|+|+++-+..
T Consensus 8 p~~vvlyDG~C~lC~~~vrfLi~~D~~~~i~f~~~q~e~-g~~~l~~~~l~~~~~~s~~~~-~~g~~~~~sdA~~~i~~~ 85 (137)
T COG3011 8 PDLVVLYDGVCPLCDGWVRFLIRRDQGGRIRFAALQSEP-GQALLEAAGLDPEDVDSVLLV-EAGQLLVGSDAAIRILRL 85 (137)
T ss_pred CCEEEEECCcchhHHHHHHHHHHhccCCcEEEEeccCch-hhhHHhhcCCChhhhheeeEe-cCCceEeccHHHHHHHHH
Confidence 344555557899999999999988766555444444443 2345666655422 22 222 278899999999998776
Q ss_pred cc
Q 019711 216 KY 217 (337)
Q Consensus 216 ~y 217 (337)
.-
T Consensus 86 L~ 87 (137)
T COG3011 86 LP 87 (137)
T ss_pred CC
Confidence 54
No 259
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=72.51 E-value=7.5 Score=36.45 Aligned_cols=25 Identities=12% Similarity=0.561 Sum_probs=19.6
Q ss_pred CCCceEEeecCCCcCHHHHHHHHHH
Q 019711 137 PEKPIEIYEYESCPFCRKVREIVAV 161 (337)
Q Consensus 137 ~~~~l~LY~~~~cP~c~kVr~~L~e 161 (337)
....+.+|..+.||||+|....+.+
T Consensus 117 ak~~I~vFtDp~CpyC~kl~~~l~~ 141 (251)
T PRK11657 117 APRIVYVFADPNCPYCKQFWQQARP 141 (251)
T ss_pred CCeEEEEEECCCChhHHHHHHHHHH
Confidence 3445778888899999999877654
No 260
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=72.33 E-value=12 Score=28.90 Aligned_cols=62 Identities=13% Similarity=0.143 Sum_probs=35.7
Q ss_pred CceEEeecCCCcCHHHHHHHHHHc----C--CCeeEEEcCCCCCCChhHHHhhCCCCCcCeEEcCCCCe
Q 019711 139 KPIEIYEYESCPFCRKVREIVAVL----D--LDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGV 201 (337)
Q Consensus 139 ~~l~LY~~~~cP~c~kVr~~L~el----g--l~ye~~~v~~~~~~~~~e~~~~np~~kVP~Lvd~~~g~ 201 (337)
.-+.+|.-++|+.|++..-.+.++ . -.+....++-..+ ..+++.+..+-..+|.++.-++|.
T Consensus 19 ~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-~~~~~~~~~~i~~~Pt~~~~~~g~ 86 (104)
T cd02997 19 HVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKP-EHDALKEEYNVKGFPTFKYFENGK 86 (104)
T ss_pred CEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCC-ccHHHHHhCCCccccEEEEEeCCC
Confidence 346667778999999886444332 2 2233333331111 234677777788999884323454
No 261
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=71.77 E-value=20 Score=27.41 Aligned_cols=59 Identities=12% Similarity=0.100 Sum_probs=37.1
Q ss_pred ceEEeecCCCcCHHHHHHHHHHcC----CCeeEEEcCCCCCCChhHHHhhCCCCCcCeEEcCCCCe
Q 019711 140 PIEIYEYESCPFCRKVREIVAVLD----LDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGV 201 (337)
Q Consensus 140 ~l~LY~~~~cP~c~kVr~~L~elg----l~ye~~~v~~~~~~~~~e~~~~np~~kVP~Lvd~~~g~ 201 (337)
-+..|..++|+.|++..-.++++. -.+....|+- + ..+++.+..+-..+|+++--.+|.
T Consensus 15 vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~--~-~~~~l~~~~~i~~~Pt~~~~~~g~ 77 (96)
T cd02956 15 VVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNC--D-AQPQIAQQFGVQALPTVYLFAAGQ 77 (96)
T ss_pred EEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEec--c-CCHHHHHHcCCCCCCEEEEEeCCE
Confidence 345566789999999877776642 2244444431 1 234677777888999985222564
No 262
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=71.37 E-value=4.8 Score=32.63 Aligned_cols=45 Identities=9% Similarity=0.085 Sum_probs=35.6
Q ss_pred hhhhhhcCCCcchhhHhHHhhccCceEEEEcCCCCCC---hHHHHHHc
Q 019711 260 LEVWAYEGSPFCKVVREVLVELELPHLQRSCARGSPK---RQILIEKA 304 (337)
Q Consensus 260 L~l~~l~~sPf~~gvr~tLADl~L~~~l~~v~~g~pk---~~e~~~~~ 304 (337)
+++|+...|+.|+..+-.|.+.++.|+++++....+. ..+|++..
T Consensus 1 i~iy~~~~C~~crka~~~L~~~~i~~~~~di~~~p~s~~eL~~~l~~~ 48 (105)
T cd03035 1 ITLYGIKNCDTVKKARKWLEARGVAYTFHDYRKDGLDAATLERWLAKV 48 (105)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCCeEEEecccCCCCHHHHHHHHHHh
Confidence 3578889999999999999999999999999766543 34444444
No 263
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=70.60 E-value=16 Score=28.49 Aligned_cols=51 Identities=12% Similarity=0.130 Sum_probs=33.2
Q ss_pred ceEEeecCCCcCHHHHHHHHHHcC------CCeeEEEcCCCCCCChhHHHhhCCCCCcCeEE
Q 019711 140 PIEIYEYESCPFCRKVREIVAVLD------LDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMV 195 (337)
Q Consensus 140 ~l~LY~~~~cP~c~kVr~~L~elg------l~ye~~~v~~~~~~~~~e~~~~np~~kVP~Lv 195 (337)
-+..|..++|+.|++..-.++++- +.+-.++++ ..+++.+..+-..+|.++
T Consensus 22 v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~-----~~~~~~~~~~i~~~Pt~~ 78 (104)
T cd03004 22 WLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQ-----KYESLCQQANIRAYPTIR 78 (104)
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECC-----chHHHHHHcCCCcccEEE
Confidence 355677789999998877666542 233333332 234566777888999874
No 264
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=70.58 E-value=4.2 Score=31.18 Aligned_cols=55 Identities=13% Similarity=0.197 Sum_probs=34.5
Q ss_pred CCCceEEeecCCCcCHHHHHHHHHHcCC------CeeEEEcCCCCCCChhHHHhhCCCCCcCeE
Q 019711 137 PEKPIEIYEYESCPFCRKVREIVAVLDL------DVLYYPCPRNGPNFRPKVLQMGGKKQFPYM 194 (337)
Q Consensus 137 ~~~~l~LY~~~~cP~c~kVr~~L~elgl------~ye~~~v~~~~~~~~~e~~~~np~~kVP~L 194 (337)
....+.+|..++|+.|++....++...- .+....++. ...+++.+..+...+|.+
T Consensus 13 ~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~---~~~~~~~~~~~i~~~P~~ 73 (102)
T TIGR01126 13 NKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDA---TAEKDLASRFGVSGFPTI 73 (102)
T ss_pred CCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEc---cchHHHHHhCCCCcCCEE
Confidence 3444777888999999987666655321 133333321 123567777788899987
No 265
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=70.36 E-value=6.3 Score=37.60 Aligned_cols=74 Identities=18% Similarity=0.333 Sum_probs=54.2
Q ss_pred CCCCCceEEeecCC------CcCHHHHHHHHHHcCCCeeEEEcCCCCCCChhHHHhhCCC----CCcCeEEcCCCCeeEe
Q 019711 135 PRPEKPIEIYEYES------CPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGK----KQFPYMVDPNTGVSMY 204 (337)
Q Consensus 135 ~~~~~~l~LY~~~~------cP~c~kVr~~L~elgl~ye~~~v~~~~~~~~~e~~~~np~----~kVP~Lvd~~~g~~l~ 204 (337)
|-....+.+|.... =-.|..||.+|+-.+|-|+.++|..... +++|+..+-+. -++|.+.. +|..|.
T Consensus 127 Pgge~~VVvY~TsLRgvRkTfE~C~~VR~ilesf~V~v~ERDVSMd~~-fr~EL~~~lg~~~~~~~LPrVFV--~GryIG 203 (281)
T KOG2824|consen 127 PGGEDRVVVYTTSLRGVRKTFEDCNAVRAILESFRVKVDERDVSMDSE-FREELQELLGEDEKAVSLPRVFV--KGRYIG 203 (281)
T ss_pred CCCCceEEEEEcccchhhhhHHHHHHHHHHHHhCceEEEEecccccHH-HHHHHHHHHhcccccCccCeEEE--ccEEec
Confidence 45566889996521 0147889999999999999999965543 67888776554 47887766 788887
Q ss_pred cchhHHH
Q 019711 205 ESDNIIK 211 (337)
Q Consensus 205 ES~aIi~ 211 (337)
....|++
T Consensus 204 gaeeV~~ 210 (281)
T KOG2824|consen 204 GAEEVVR 210 (281)
T ss_pred cHHHhhh
Confidence 7766665
No 266
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=69.92 E-value=18 Score=30.15 Aligned_cols=60 Identities=17% Similarity=0.195 Sum_probs=32.4
Q ss_pred CCCcCHHHHHHHHHHc----CCCeeEEEcC--CCCC--CChhHHHhhCCCC-CcCeEEcCCCCeeEecc
Q 019711 147 ESCPFCRKVREIVAVL----DLDVLYYPCP--RNGP--NFRPKVLQMGGKK-QFPYMVDPNTGVSMYES 206 (337)
Q Consensus 147 ~~cP~c~kVr~~L~el----gl~ye~~~v~--~~~~--~~~~e~~~~np~~-kVP~Lvd~~~g~~l~ES 206 (337)
.|||.|+.+.-.++++ .-.+..+.|+ .... ....++.+...-. .+|+++--++|..+.|.
T Consensus 38 ~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~I~~~iPT~~~~~~~~~l~~~ 106 (119)
T cd02952 38 SWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPKLTTGVPTLLRWKTPQRLVED 106 (119)
T ss_pred CCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccCcccCCCEEEEEcCCceecch
Confidence 6999999776555443 3224444443 2110 1124566555555 89998532355555553
No 267
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=69.40 E-value=9.3 Score=28.23 Aligned_cols=71 Identities=14% Similarity=0.176 Sum_probs=43.0
Q ss_pred hhhhhhcCCCcchhhHhHHhhc----cCceEEEEcCCCCCChHHHHHHcCCCCccEEEcCCCCee---eecHHHHHHHHH
Q 019711 260 LEVWAYEGSPFCKVVREVLVEL----ELPHLQRSCARGSPKRQILIEKAKHFQVPYLEDPNTGVQ---MFESADIVEYLR 332 (337)
Q Consensus 260 L~l~~l~~sPf~~gvr~tLADl----~L~~~l~~v~~g~pk~~e~~~~~p~~qVP~L~d~~~g~~---l~ES~~I~~YL~ 332 (337)
+++|+..+|++|......+.++ ...+.+..++.. ..++..+..+-..+|+++.+ +... .....+|.+.|.
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~--~~~~~~~~~~v~~vPt~~~~-g~~~~~G~~~~~~l~~~l~ 79 (82)
T TIGR00411 3 IELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVM--ENPQKAMEYGIMAVPAIVIN-GDVEFIGAPTKEELVEAIK 79 (82)
T ss_pred EEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCc--cCHHHHHHcCCccCCEEEEC-CEEEEecCCCHHHHHHHHH
Confidence 4567778999999888777654 333444444433 23345566777789999762 2222 124556666665
Q ss_pred H
Q 019711 333 A 333 (337)
Q Consensus 333 ~ 333 (337)
+
T Consensus 80 ~ 80 (82)
T TIGR00411 80 K 80 (82)
T ss_pred h
Confidence 4
No 268
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=69.11 E-value=13 Score=29.15 Aligned_cols=55 Identities=15% Similarity=0.129 Sum_probs=33.5
Q ss_pred ceEEeecCCCcCHHHHHHHHHHc----CCCeeEEEcCCCCCCChhHHHhhCCCCCcCeEE
Q 019711 140 PIEIYEYESCPFCRKVREIVAVL----DLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMV 195 (337)
Q Consensus 140 ~l~LY~~~~cP~c~kVr~~L~el----gl~ye~~~v~~~~~~~~~e~~~~np~~kVP~Lv 195 (337)
.+..|..++|+.|+...-.++++ +-.+....++-..+ ...++.+..+-..+|.++
T Consensus 21 ~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~-~~~~~~~~~~i~~~Pt~~ 79 (109)
T cd03002 21 TLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDED-KNKPLCGKYGVQGFPTLK 79 (109)
T ss_pred EEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCcc-ccHHHHHHcCCCcCCEEE
Confidence 46667778999999886666554 21233333321111 134577777888999884
No 269
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=68.81 E-value=17 Score=28.72 Aligned_cols=56 Identities=18% Similarity=0.329 Sum_probs=34.5
Q ss_pred CCceEEeecCCCcCHHHHHHHHHHcCCC---eeEEEcCCCCCCChhHHHhhCCCCCcCeEE
Q 019711 138 EKPIEIYEYESCPFCRKVREIVAVLDLD---VLYYPCPRNGPNFRPKVLQMGGKKQFPYMV 195 (337)
Q Consensus 138 ~~~l~LY~~~~cP~c~kVr~~L~elgl~---ye~~~v~~~~~~~~~e~~~~np~~kVP~Lv 195 (337)
+.-+..|..++|+.|++..-.++++.-. +....|+. +...+++.+...-..+|+++
T Consensus 19 ~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~~~~~~vd~--~~~~~~l~~~~~V~~~PT~~ 77 (100)
T cd02999 19 DYTAVLFYASWCPFSASFRPHFNALSSMFPQIRHLAIEE--SSIKPSLLSRYGVVGFPTIL 77 (100)
T ss_pred CEEEEEEECCCCHHHHhHhHHHHHHHHHhccCceEEEEC--CCCCHHHHHhcCCeecCEEE
Confidence 3346667778999999988777665211 22333321 11234666777788999873
No 270
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=68.56 E-value=24 Score=33.49 Aligned_cols=61 Identities=16% Similarity=0.305 Sum_probs=35.5
Q ss_pred eEEeecCCCcCHHHHHHHHHHc----CCCeeEEEcCCCCCC------ChhHHHhhCCCCCcCeE--EcCCCCe
Q 019711 141 IEIYEYESCPFCRKVREIVAVL----DLDVLYYPCPRNGPN------FRPKVLQMGGKKQFPYM--VDPNTGV 201 (337)
Q Consensus 141 l~LY~~~~cP~c~kVr~~L~el----gl~ye~~~v~~~~~~------~~~e~~~~np~~kVP~L--vd~~~g~ 201 (337)
+..|.-.+||+|++..-.|+++ |+.+..+.++..... ......+..+-..+|.+ +++++|.
T Consensus 170 Lv~F~AswCp~C~~~~P~L~~la~~yg~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv~~~~~~ 242 (271)
T TIGR02740 170 LFFFFKSDCPYCHQQAPILQAFEDRYGIEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLADPDPNQ 242 (271)
T ss_pred EEEEECCCCccHHHHhHHHHHHHHHcCcEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEEECCCCE
Confidence 4445567899999877666544 655555555422110 11234556677889987 4544453
No 271
>PHA03075 glutaredoxin-like protein; Provisional
Probab=67.93 E-value=6 Score=33.01 Aligned_cols=35 Identities=14% Similarity=0.325 Sum_probs=31.3
Q ss_pred CCceEEeecCCCcCHHHHHHHHHHcCCCeeEEEcC
Q 019711 138 EKPIEIYEYESCPFCRKVREIVAVLDLDVLYYPCP 172 (337)
Q Consensus 138 ~~~l~LY~~~~cP~c~kVr~~L~elgl~ye~~~v~ 172 (337)
+..+.|++.+.|+-|.-+..+|+++.=+|+...|+
T Consensus 2 K~tLILfGKP~C~vCe~~s~~l~~ledeY~ilrVN 36 (123)
T PHA03075 2 KKTLILFGKPLCSVCESISEALKELEDEYDILRVN 36 (123)
T ss_pred CceEEEeCCcccHHHHHHHHHHHHhhccccEEEEE
Confidence 45699999999999999999999999899988773
No 272
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=67.86 E-value=13 Score=29.17 Aligned_cols=54 Identities=11% Similarity=0.097 Sum_probs=32.8
Q ss_pred CceEEeecCCCcCHHHHHHHHHHc-------CCCeeEEEcCCCCCCChhHHHhhCCCCCcCeEE
Q 019711 139 KPIEIYEYESCPFCRKVREIVAVL-------DLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMV 195 (337)
Q Consensus 139 ~~l~LY~~~~cP~c~kVr~~L~el-------gl~ye~~~v~~~~~~~~~e~~~~np~~kVP~Lv 195 (337)
.-+..|..++||.|++..-.++++ +..+....++.. ..+++.+...-..+|.++
T Consensus 17 ~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~---~~~~~~~~~~I~~~Pt~~ 77 (104)
T cd03000 17 IWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDAT---AYSSIASEFGVRGYPTIK 77 (104)
T ss_pred eEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECc---cCHhHHhhcCCccccEEE
Confidence 335567778999999877655443 323333333211 123566677778999884
No 273
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=67.01 E-value=7.3 Score=32.30 Aligned_cols=59 Identities=15% Similarity=0.145 Sum_probs=37.6
Q ss_pred eEEeecCCCcCHHHHHHHHHHcCCC----eeEEEcCCCCCCChhHHHhhCCCCCcCeEEcCCCCee
Q 019711 141 IEIYEYESCPFCRKVREIVAVLDLD----VLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVS 202 (337)
Q Consensus 141 l~LY~~~~cP~c~kVr~~L~elgl~----ye~~~v~~~~~~~~~e~~~~np~~kVP~Lvd~~~g~~ 202 (337)
+.-|.-+||+.|+...-.++++--+ +....|+-. .-+++.+..+-..+|.++-=.+|..
T Consensus 18 VV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD---~~~~la~~~~V~~iPTf~~fk~G~~ 80 (114)
T cd02954 18 VIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDID---EVPDFNKMYELYDPPTVMFFFRNKH 80 (114)
T ss_pred EEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECC---CCHHHHHHcCCCCCCEEEEEECCEE
Confidence 4447778999999988877665322 233344311 2347888889899999843225543
No 274
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=66.20 E-value=41 Score=34.63 Aligned_cols=71 Identities=15% Similarity=0.113 Sum_probs=45.8
Q ss_pred chhhhhhcCCCcchhhHhHHhhccCce---EEEEcCCCCCChHHHHHHcCCCCccEEEcCCCCeeeec----HHHHHHHH
Q 019711 259 PLEVWAYEGSPFCKVVREVLVELELPH---LQRSCARGSPKRQILIEKAKHFQVPYLEDPNTGVQMFE----SADIVEYL 331 (337)
Q Consensus 259 ~L~l~~l~~sPf~~gvr~tLADl~L~~---~l~~v~~g~pk~~e~~~~~p~~qVP~L~d~~~g~~l~E----S~~I~~YL 331 (337)
.+++|....||||..+...+.++.+.. +...+ +...-+++.++..-..||.+..+ |..+++ -..|++.|
T Consensus 119 ~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~~i~~~~i--d~~~~~~~~~~~~v~~VP~~~i~--~~~~~~g~~~~~~~~~~~ 194 (517)
T PRK15317 119 HFETYVSLSCHNCPDVVQALNLMAVLNPNITHTMI--DGALFQDEVEARNIMAVPTVFLN--GEEFGQGRMTLEEILAKL 194 (517)
T ss_pred EEEEEEcCCCCCcHHHHHHHHHHHHhCCCceEEEE--EchhCHhHHHhcCCcccCEEEEC--CcEEEecCCCHHHHHHHH
Confidence 466777789999998877777766532 22222 23456778888888899999763 323333 34566666
Q ss_pred HH
Q 019711 332 RA 333 (337)
Q Consensus 332 ~~ 333 (337)
.+
T Consensus 195 ~~ 196 (517)
T PRK15317 195 DT 196 (517)
T ss_pred hc
Confidence 54
No 275
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=65.30 E-value=7.5 Score=28.99 Aligned_cols=32 Identities=28% Similarity=0.580 Sum_probs=24.1
Q ss_pred eEEeecCCCcCHHHHHHHHHHc------CCCeeEEEcC
Q 019711 141 IEIYEYESCPFCRKVREIVAVL------DLDVLYYPCP 172 (337)
Q Consensus 141 l~LY~~~~cP~c~kVr~~L~el------gl~ye~~~v~ 172 (337)
|.+|....||+|......++++ ++.++.++++
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~ 38 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDGGVRVVYRPFP 38 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCCcEEEEEeccc
Confidence 3567778999999999888775 4556666664
No 276
>PF13728 TraF: F plasmid transfer operon protein
Probab=64.42 E-value=35 Score=31.28 Aligned_cols=63 Identities=22% Similarity=0.373 Sum_probs=38.9
Q ss_pred CceEEeecCCCcCHHHHHHHH----HHcCCCeeEEEcCCCC------CCChhHHHhhCCCCCcCeE--EcCCCCe
Q 019711 139 KPIEIYEYESCPFCRKVREIV----AVLDLDVLYYPCPRNG------PNFRPKVLQMGGKKQFPYM--VDPNTGV 201 (337)
Q Consensus 139 ~~l~LY~~~~cP~c~kVr~~L----~elgl~ye~~~v~~~~------~~~~~e~~~~np~~kVP~L--vd~~~g~ 201 (337)
-.|.++.-..||+|.+-.-+| ++.|+.+..+.+|..+ ........+..+-..+|+| ++++++.
T Consensus 122 ~gL~~F~~~~C~~C~~~~pil~~~~~~yg~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~Lv~~~~~~ 196 (215)
T PF13728_consen 122 YGLFFFYRSDCPYCQQQAPILQQFADKYGFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFLVNPNTKK 196 (215)
T ss_pred eEEEEEEcCCCchhHHHHHHHHHHHHHhCCEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEEEECCCCe
Confidence 346666777999998754444 4558888877775221 1112344445555799987 5665543
No 277
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=64.28 E-value=13 Score=30.72 Aligned_cols=25 Identities=20% Similarity=0.422 Sum_probs=19.4
Q ss_pred CCceEEeecCCCcCHHHHHHHHHHc
Q 019711 138 EKPIEIYEYESCPFCRKVREIVAVL 162 (337)
Q Consensus 138 ~~~l~LY~~~~cP~c~kVr~~L~el 162 (337)
...|..|....||+|++....++.+
T Consensus 6 ~~~i~~f~D~~Cp~C~~~~~~l~~~ 30 (154)
T cd03023 6 DVTIVEFFDYNCGYCKKLAPELEKL 30 (154)
T ss_pred CEEEEEEECCCChhHHHhhHHHHHH
Confidence 4457778888999999998776653
No 278
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=64.22 E-value=9.6 Score=30.61 Aligned_cols=67 Identities=16% Similarity=0.336 Sum_probs=39.6
Q ss_pred eecCCCcCHHHHHHHHHHcCC--CeeEEEcCCCCCCChhHHH---hhC---CCCCcCeEEcCCCCe-eEecchhHHHHHh
Q 019711 144 YEYESCPFCRKVREIVAVLDL--DVLYYPCPRNGPNFRPKVL---QMG---GKKQFPYMVDPNTGV-SMYESDNIIKYLV 214 (337)
Q Consensus 144 Y~~~~cP~c~kVr~~L~elgl--~ye~~~v~~~~~~~~~e~~---~~n---p~~kVP~Lvd~~~g~-~l~ES~aIi~YL~ 214 (337)
|....||+|......++.++. .++.+++. ++.. .++. .+. -...+ .+++ +|. ...++.|++.-+.
T Consensus 2 ~YDg~C~lC~~~~~~l~~~d~~~~l~~~~~~--~~~~-~~~~~~~~~~~~~~~~~l-~~~~--~g~~~~~G~~A~~~l~~ 75 (114)
T PF04134_consen 2 FYDGDCPLCRREVRFLRRRDRGGRLRFVDIQ--SEPD-QALLASYGISPEDADSRL-HLID--DGERVYRGSDAVLRLLR 75 (114)
T ss_pred EECCCCHhHHHHHHHHHhcCCCCCEEEEECC--Chhh-hhHHHhcCcCHHHHcCee-EEec--CCCEEEEcHHHHHHHHH
Confidence 344689999999999999875 56666651 1111 1111 111 22222 2233 555 8888999888765
Q ss_pred hc
Q 019711 215 GK 216 (337)
Q Consensus 215 ~~ 216 (337)
..
T Consensus 76 ~~ 77 (114)
T PF04134_consen 76 RL 77 (114)
T ss_pred Hc
Confidence 43
No 279
>KOG3028 consensus Translocase of outer mitochondrial membrane complex, subunit TOM37/Metaxin 1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.84 E-value=39 Score=32.88 Aligned_cols=58 Identities=12% Similarity=0.183 Sum_probs=44.5
Q ss_pred CCcCHHHHHHHHHHcCCCeeEEEcCCCCCCChhHHHhhCCCCCcCeEEcCCCCeeEecchhHHHHHhh
Q 019711 148 SCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLVG 215 (337)
Q Consensus 148 ~cP~c~kVr~~L~elgl~ye~~~v~~~~~~~~~e~~~~np~~kVP~Lvd~~~g~~l~ES~aIi~YL~~ 215 (337)
.|+.|..|.+.++..+-+.++... .+ .. ..|.|++|+|++. +|.++..-..|+.||.+
T Consensus 16 id~~sL~~l~y~kl~~~~l~v~~s-sN--~~------~s~sg~LP~l~~~-ng~~va~~~~iv~~L~k 73 (313)
T KOG3028|consen 16 IDPDSLAALIYLKLAGAPLKVVVS-SN--PW------RSPSGKLPYLITD-NGTKVAGPVKIVQFLKK 73 (313)
T ss_pred cChhHHHHHHHHHHhCCCceeEee-cC--CC------CCCCCCCCeEEec-CCceeccHHHHHHHHHH
Confidence 499999999999999855444332 11 11 3588999999863 66899999999999988
No 280
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=63.83 E-value=16 Score=28.34 Aligned_cols=61 Identities=13% Similarity=0.143 Sum_probs=44.8
Q ss_pred hhhhhcCCCcchhhHhHHhhccCceEEEEcCCCCCChHHHH------------HHcCCCCccEEEcCCCCeee
Q 019711 261 EVWAYEGSPFCKVVREVLVELELPHLQRSCARGSPKRQILI------------EKAKHFQVPYLEDPNTGVQM 321 (337)
Q Consensus 261 ~l~~l~~sPf~~gvr~tLADl~L~~~l~~v~~g~pk~~e~~------------~~~p~~qVP~L~d~~~g~~l 321 (337)
++|.-..||-|+-....|+.+++.|+.+++....++..+|+ +.++..-+|.|..+++.+.+
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl~v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~~d~~vVl 77 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERLNVDYDFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALLTDDGKVVL 77 (85)
T ss_pred eeeccccCcchHHHHHHHHHcCCCceeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEEeCCCcEEE
Confidence 45666679999999999999999999998865444444443 34566779999876544444
No 281
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=63.79 E-value=7.3 Score=32.08 Aligned_cols=36 Identities=8% Similarity=-0.065 Sum_probs=31.5
Q ss_pred hhhhhhcCCCcchhhHhHHhhccCceEEEEcCCCCC
Q 019711 260 LEVWAYEGSPFCKVVREVLVELELPHLQRSCARGSP 295 (337)
Q Consensus 260 L~l~~l~~sPf~~gvr~tLADl~L~~~l~~v~~g~p 295 (337)
+++|+...|..|++.+-.|.+.++.|+.+++....+
T Consensus 2 i~iy~~p~C~~crkA~~~L~~~gi~~~~~d~~~~p~ 37 (113)
T cd03033 2 IIFYEKPGCANNARQKALLEAAGHEVEVRDLLTEPW 37 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCCcEEeehhcCCC
Confidence 568899999999999999999999999999876543
No 282
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=63.66 E-value=22 Score=27.54 Aligned_cols=53 Identities=8% Similarity=0.076 Sum_probs=32.3
Q ss_pred ceEEeecCCCcCHHHHHHHHHHcCC----CeeEEEcCCCCCCChhHHHhhCCCCCcCeEE
Q 019711 140 PIEIYEYESCPFCRKVREIVAVLDL----DVLYYPCPRNGPNFRPKVLQMGGKKQFPYMV 195 (337)
Q Consensus 140 ~l~LY~~~~cP~c~kVr~~L~elgl----~ye~~~v~~~~~~~~~e~~~~np~~kVP~Lv 195 (337)
-+..|..++|+.|+...-.++++.- .+....|+-. ..+++.+...-..+|.++
T Consensus 21 ~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~---~~~~~~~~~~v~~~Pt~~ 77 (101)
T cd03003 21 WFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCG---DDRMLCRSQGVNSYPSLY 77 (101)
T ss_pred EEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCC---ccHHHHHHcCCCccCEEE
Confidence 3556677899999988776655421 1333333211 123566666778999884
No 283
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=62.93 E-value=25 Score=26.66 Aligned_cols=53 Identities=23% Similarity=0.384 Sum_probs=37.8
Q ss_pred hhhhhhcCCCcchhhHhHHhhcc--CceEEEEcCCCCCChHHHHHHcCCCCccEEEcC
Q 019711 260 LEVWAYEGSPFCKVVREVLVELE--LPHLQRSCARGSPKRQILIEKAKHFQVPYLEDP 315 (337)
Q Consensus 260 L~l~~l~~sPf~~gvr~tLADl~--L~~~l~~v~~g~pk~~e~~~~~p~~qVP~L~d~ 315 (337)
+++|+-++|..|......|..+. .++.+..++.. .-++|.++++. .||+|..+
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~~~~~l~~vDI~--~d~~l~~~Y~~-~IPVl~~~ 56 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAEFPFELEEVDID--EDPELFEKYGY-RIPVLHID 56 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTTSTCEEEEEETT--TTHHHHHHSCT-STSEEEET
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhhcCceEEEEECC--CCHHHHHHhcC-CCCEEEEc
Confidence 46778889999999999998765 34445444443 34569999985 69999763
No 284
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=62.73 E-value=13 Score=24.31 Aligned_cols=53 Identities=17% Similarity=0.171 Sum_probs=35.0
Q ss_pred hhhhcCCCcchhhHhHHh-----hccCceEEEEcCCCCCChHHHHHHcCCCCccEEEcC
Q 019711 262 VWAYEGSPFCKVVREVLV-----ELELPHLQRSCARGSPKRQILIEKAKHFQVPYLEDP 315 (337)
Q Consensus 262 l~~l~~sPf~~gvr~tLA-----Dl~L~~~l~~v~~g~pk~~e~~~~~p~~qVP~L~d~ 315 (337)
+|+...|++|......+. +.++.+...++.... ....+....+..++|.++..
T Consensus 3 ~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~P~~~~~ 60 (69)
T cd01659 3 LFYAPWCPFCQALRPVLAELALLNKGVKFEAVDVDEDP-ALEKELKRYGVGGVPTLVVF 60 (69)
T ss_pred EEECCCChhHHhhhhHHHHHHhhCCCcEEEEEEcCCCh-HHhhHHHhCCCccccEEEEE
Confidence 344557899999988888 445666666665443 23333456777889998753
No 285
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=62.44 E-value=16 Score=32.13 Aligned_cols=34 Identities=21% Similarity=0.253 Sum_probs=23.6
Q ss_pred CceEEe-ecCCCcCHHH-------HHHHHHHcCCCeeEEEcC
Q 019711 139 KPIEIY-EYESCPFCRK-------VREIVAVLDLDVLYYPCP 172 (337)
Q Consensus 139 ~~l~LY-~~~~cP~c~k-------Vr~~L~elgl~ye~~~v~ 172 (337)
+-+.|| ...+||.||. +...++..+-++|++-|.
T Consensus 34 KvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS 75 (157)
T KOG2501|consen 34 KVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVS 75 (157)
T ss_pred cEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEe
Confidence 456776 4568999985 444445556779999885
No 286
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=61.78 E-value=35 Score=31.56 Aligned_cols=76 Identities=13% Similarity=0.181 Sum_probs=47.0
Q ss_pred eEEeecCCCcCHHHHHHHHHHc----CCCeeEEEcCCCCCCChhHHHhhCCCCCcCeEEcCCCCeeE------ecchhHH
Q 019711 141 IEIYEYESCPFCRKVREIVAVL----DLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSM------YESDNII 210 (337)
Q Consensus 141 l~LY~~~~cP~c~kVr~~L~el----gl~ye~~~v~~~~~~~~~e~~~~np~~kVP~Lvd~~~g~~l------~ES~aIi 210 (337)
+..|.-++|+.|++..-.++++ +-.+....++.. ..+++.+...-..+|.++--++|..+ ....+|.
T Consensus 56 lV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~---~~~~l~~~~~I~~~PTl~~f~~G~~v~~~~G~~s~e~L~ 132 (224)
T PTZ00443 56 FVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDAT---RALNLAKRFAIKGYPTLLLFDKGKMYQYEGGDRSTEKLA 132 (224)
T ss_pred EEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCc---ccHHHHHHcCCCcCCEEEEEECCEEEEeeCCCCCHHHHH
Confidence 5556678999999887766554 212333333311 22467777888899987421255432 1246788
Q ss_pred HHHhhccCC
Q 019711 211 KYLVGKYGD 219 (337)
Q Consensus 211 ~YL~~~y~~ 219 (337)
+|+.++|..
T Consensus 133 ~fi~~~~~~ 141 (224)
T PTZ00443 133 AFALGDFKK 141 (224)
T ss_pred HHHHHHHHh
Confidence 888887753
No 287
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=61.64 E-value=31 Score=36.36 Aligned_cols=54 Identities=13% Similarity=0.173 Sum_probs=32.4
Q ss_pred ceEEeecCCCcCHHHHHHH-------HHHcCCCeeEEEcC--CCCCCChhHHHhhCCCCCcCeEE
Q 019711 140 PIEIYEYESCPFCRKVREI-------VAVLDLDVLYYPCP--RNGPNFRPKVLQMGGKKQFPYMV 195 (337)
Q Consensus 140 ~l~LY~~~~cP~c~kVr~~-------L~elgl~ye~~~v~--~~~~~~~~e~~~~np~~kVP~Lv 195 (337)
-+.-|.-++|+.|++.... .++++ ++....+| .+++ ...++.+..+-..+|.++
T Consensus 477 VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~-~~~~v~vDvt~~~~-~~~~l~~~~~v~g~Pt~~ 539 (571)
T PRK00293 477 VMLDLYADWCVACKEFEKYTFSDPQVQQALA-DTVLLQADVTANNA-EDVALLKHYNVLGLPTIL 539 (571)
T ss_pred EEEEEECCcCHhHHHHHHHhcCCHHHHHHhc-CCEEEEEECCCCCh-hhHHHHHHcCCCCCCEEE
Confidence 3444667899999976432 12232 34444443 3322 335677888888999873
No 288
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=61.16 E-value=11 Score=31.04 Aligned_cols=65 Identities=11% Similarity=-0.054 Sum_probs=41.8
Q ss_pred CCceEEeecCC--CcCHHHHHHHHHHcCCCe----eEEEcCCCCCCChhHHHhhCCCCCcCeEEcCCCCeeEec
Q 019711 138 EKPIEIYEYES--CPFCRKVREIVAVLDLDV----LYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYE 205 (337)
Q Consensus 138 ~~~l~LY~~~~--cP~c~kVr~~L~elgl~y----e~~~v~~~~~~~~~e~~~~np~~kVP~Lvd~~~g~~l~E 205 (337)
...+.+|+-.+ ||.|+.+.-+|+++--+| ....|+. + ..++..+...-..||.|+-=.+|..+..
T Consensus 28 ~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdi--d-~~~~la~~f~V~sIPTli~fkdGk~v~~ 98 (111)
T cd02965 28 GDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGR--A-DEQALAARFGVLRTPALLFFRDGRYVGV 98 (111)
T ss_pred CCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEEC--C-CCHHHHHHcCCCcCCEEEEEECCEEEEE
Confidence 34466666664 999999998887763333 2323321 2 2247888899999999853336765544
No 289
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=61.08 E-value=28 Score=26.66 Aligned_cols=53 Identities=13% Similarity=0.080 Sum_probs=31.4
Q ss_pred ceEEeecCCCcCHHHHHHHHHHc----CCCeeEEEcCCCCCCChhHHHhhCCCCCcCeEE
Q 019711 140 PIEIYEYESCPFCRKVREIVAVL----DLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMV 195 (337)
Q Consensus 140 ~l~LY~~~~cP~c~kVr~~L~el----gl~ye~~~v~~~~~~~~~e~~~~np~~kVP~Lv 195 (337)
-+.+|..++|+.|+...-.+.++ .-.+....++. + ..+++.+..+-..+|.++
T Consensus 21 vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~--~-~~~~~~~~~~i~~~P~~~ 77 (103)
T cd03001 21 WLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDA--D-VHQSLAQQYGVRGFPTIK 77 (103)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEEC--c-chHHHHHHCCCCccCEEE
Confidence 35556678999999986655443 21233333321 1 234566666777899874
No 290
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=61.07 E-value=25 Score=26.92 Aligned_cols=55 Identities=15% Similarity=0.211 Sum_probs=34.3
Q ss_pred CceEEeecCCCcCHHHHHHHHHHc----C--CCeeEEEcCCCCCCChhHHHhhCCCCCcCeEE
Q 019711 139 KPIEIYEYESCPFCRKVREIVAVL----D--LDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMV 195 (337)
Q Consensus 139 ~~l~LY~~~~cP~c~kVr~~L~el----g--l~ye~~~v~~~~~~~~~e~~~~np~~kVP~Lv 195 (337)
.-+..|..++|+.|++....++++ . -.+....++...+ .+++.+..+-..+|.++
T Consensus 20 ~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~--~~~~~~~~~i~~~P~~~ 80 (105)
T cd02998 20 DVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEA--NKDLAKKYGVSGFPTLK 80 (105)
T ss_pred cEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCc--chhhHHhCCCCCcCEEE
Confidence 346677788999999776665443 2 2345544432211 24566667778999874
No 291
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=60.39 E-value=22 Score=31.86 Aligned_cols=32 Identities=16% Similarity=0.574 Sum_probs=20.0
Q ss_pred eEEeecCCCcCHHHHHHHHHH----cCCCeeEEEcC
Q 019711 141 IEIYEYESCPFCRKVREIVAV----LDLDVLYYPCP 172 (337)
Q Consensus 141 l~LY~~~~cP~c~kVr~~L~e----lgl~ye~~~v~ 172 (337)
+..|.-.+||+|++..-.|+. .|+.+.-+.++
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~g~~Vi~Vs~D 108 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQYGFSVFPYTLD 108 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHcCCEEEEEEeC
Confidence 445556799999998544444 46555555443
No 292
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=59.96 E-value=21 Score=29.30 Aligned_cols=51 Identities=25% Similarity=0.349 Sum_probs=29.1
Q ss_pred cCCCcCHHHHHHHHHHc-----CCCeeEEEcCCCCCCChhHHHhhCCCCCcCeEEcC
Q 019711 146 YESCPFCRKVREIVAVL-----DLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDP 197 (337)
Q Consensus 146 ~~~cP~c~kVr~~L~el-----gl~ye~~~v~~~~~~~~~e~~~~np~~kVP~Lvd~ 197 (337)
..+||.|++-...|.++ +..++.+-|..+.......|.+.... .+|++.|+
T Consensus 33 ~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~~~~~~~~~~~~~-~~p~~~D~ 88 (149)
T cd02970 33 GFGCPFCREYLRALSKLLPELDALGVELVAVGPESPEKLEAFDKGKFL-PFPVYADP 88 (149)
T ss_pred CCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCHHHHHHHHHhcCC-CCeEEECC
Confidence 46999999866555543 12345555532222222346665543 68998884
No 293
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=59.31 E-value=24 Score=27.71 Aligned_cols=56 Identities=16% Similarity=0.373 Sum_probs=31.7
Q ss_pred eEEeecCCCcCHHHHHHHHHHcC----CCeeEEEcCCCCCCChhHHHhhCCCCCcCeEEc
Q 019711 141 IEIYEYESCPFCRKVREIVAVLD----LDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVD 196 (337)
Q Consensus 141 l~LY~~~~cP~c~kVr~~L~elg----l~ye~~~v~~~~~~~~~e~~~~np~~kVP~Lvd 196 (337)
+..|...+||.|++..-.++++. -.+..+-+.........+|.+..+...+|++.+
T Consensus 25 vl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v~~~~~~~~~~~~~~~~~~~~p~~~~ 84 (114)
T cd02967 25 LLFFLSPTCPVCKKLLPVIRSIARAEADWLDVVLASDGEKAEHQRFLKKHGLEAFPYVLS 84 (114)
T ss_pred EEEEECCCCcchHhHhHHHHHHHHHhcCCcEEEEEeCCCHHHHHHHHHHhCCCCCcEEec
Confidence 33455668999998776665542 123333332122223345777777666887763
No 294
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=57.93 E-value=71 Score=27.50 Aligned_cols=49 Identities=8% Similarity=0.076 Sum_probs=27.5
Q ss_pred ceEE-eecCCCcCHHHHHHHHHHc------------CCCeeEEEcCCC-CCCChhHHHhhCCC
Q 019711 140 PIEI-YEYESCPFCRKVREIVAVL------------DLDVLYYPCPRN-GPNFRPKVLQMGGK 188 (337)
Q Consensus 140 ~l~L-Y~~~~cP~c~kVr~~L~el------------gl~ye~~~v~~~-~~~~~~e~~~~np~ 188 (337)
.+-| |...+||.|++..-.|.++ +-.++.+-|... .++.-.+|.+..+.
T Consensus 27 ~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~ 89 (146)
T cd03008 27 VLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPK 89 (146)
T ss_pred EEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCC
Confidence 3444 4455899999988777652 123566666422 22223356666554
No 295
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=57.87 E-value=28 Score=28.35 Aligned_cols=21 Identities=19% Similarity=0.325 Sum_probs=13.9
Q ss_pred eEEeecCCCcCHHHHHHHHHH
Q 019711 141 IEIYEYESCPFCRKVREIVAV 161 (337)
Q Consensus 141 l~LY~~~~cP~c~kVr~~L~e 161 (337)
+..+...+|+.|++..-.|.+
T Consensus 22 ll~Fwa~wC~~C~~~~p~l~~ 42 (131)
T cd03009 22 GLYFSASWCPPCRAFTPKLVE 42 (131)
T ss_pred EEEEECCCChHHHHHhHHHHH
Confidence 333445799999987666543
No 296
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=56.81 E-value=29 Score=26.53 Aligned_cols=53 Identities=9% Similarity=0.125 Sum_probs=31.8
Q ss_pred ceEEeecCCCcCHHHHHHHHHHc-----C--CCeeEEEcCCCCCCChhHHHhhCCCCCcCeEE
Q 019711 140 PIEIYEYESCPFCRKVREIVAVL-----D--LDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMV 195 (337)
Q Consensus 140 ~l~LY~~~~cP~c~kVr~~L~el-----g--l~ye~~~v~~~~~~~~~e~~~~np~~kVP~Lv 195 (337)
.+..|..++|+.|++..-.++++ + -.+....++-. ...++.+...-..+|.++
T Consensus 19 ~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~---~~~~~~~~~~v~~~Pt~~ 78 (102)
T cd03005 19 HFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCT---QHRELCSEFQVRGYPTLL 78 (102)
T ss_pred EEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECC---CChhhHhhcCCCcCCEEE
Confidence 45667778999999876655443 2 13444444311 122455566778899874
No 297
>cd03189 GST_C_GTT1_like GST_C family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endopl
Probab=54.39 E-value=1.5 Score=35.17 Aligned_cols=41 Identities=5% Similarity=0.053 Sum_probs=27.6
Q ss_pred hhcCCCcchhhHhHHhhccCceEEEEcC------CCCCChHHHHHHc
Q 019711 264 AYEGSPFCKVVREVLVELELPHLQRSCA------RGSPKRQILIEKA 304 (337)
Q Consensus 264 ~l~~sPf~~gvr~tLADl~L~~~l~~v~------~g~pk~~e~~~~~ 304 (337)
.+.+++|++|+++|++|+.+.+.+.+.. ..-++..+|+++.
T Consensus 69 ~L~~~~~l~Gd~~t~ADi~l~~~~~~~~~~~~~~~~~p~l~~w~~~~ 115 (119)
T cd03189 69 RLAKKGYFVGDKLTAADIMMSFPLEAALARGPLLEKYPNIAAYLERI 115 (119)
T ss_pred HHccCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCchHHHHHHHH
Confidence 4567899999999999998754332221 1126677777654
No 298
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=54.09 E-value=44 Score=28.92 Aligned_cols=62 Identities=15% Similarity=0.130 Sum_probs=34.7
Q ss_pred eEEeecCCCcCHHHHHHHHHHcC-----CCeeEEEcCCCCCCChhHHHhhCCCC------CcCeEEcCCCCeeEec
Q 019711 141 IEIYEYESCPFCRKVREIVAVLD-----LDVLYYPCPRNGPNFRPKVLQMGGKK------QFPYMVDPNTGVSMYE 205 (337)
Q Consensus 141 l~LY~~~~cP~c~kVr~~L~elg-----l~ye~~~v~~~~~~~~~e~~~~np~~------kVP~Lvd~~~g~~l~E 205 (337)
+..|..++|+.|+...-.++++- -.+....|+-+ + .++..+...-. ++|+++--.+|..+..
T Consensus 51 vV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd--~-~~~la~~~~V~~~~~v~~~PT~ilf~~Gk~v~r 123 (152)
T cd02962 51 LVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIG--R-FPNVAEKFRVSTSPLSKQLPTIILFQGGKEVAR 123 (152)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECC--C-CHHHHHHcCceecCCcCCCCEEEEEECCEEEEE
Confidence 55677789999998887776542 12334444311 1 12444444433 4998853236765543
No 299
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=54.07 E-value=40 Score=27.54 Aligned_cols=54 Identities=11% Similarity=-0.032 Sum_probs=32.5
Q ss_pred CceEEeecCCCcCHHHHHHHHHHcCC----CeeEEEcCCCCCCChhHHH-hhCCCCCcCeEE
Q 019711 139 KPIEIYEYESCPFCRKVREIVAVLDL----DVLYYPCPRNGPNFRPKVL-QMGGKKQFPYMV 195 (337)
Q Consensus 139 ~~l~LY~~~~cP~c~kVr~~L~elgl----~ye~~~v~~~~~~~~~e~~-~~np~~kVP~Lv 195 (337)
-.+..|+-+||+.|+...-.++++.- .+....|+- ++. .+.. +...-..+|.|+
T Consensus 31 ~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~--d~~-~~l~~~~~~I~~~PTl~ 89 (113)
T cd03006 31 VSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINC--WWP-QGKCRKQKHFFYFPVIH 89 (113)
T ss_pred EEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEEC--CCC-hHHHHHhcCCcccCEEE
Confidence 34666778899999998877777631 133333321 111 2344 356667899884
No 300
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=53.94 E-value=67 Score=28.42 Aligned_cols=30 Identities=27% Similarity=0.592 Sum_probs=18.4
Q ss_pred ceEEeecCCCcCHHHHHHHHH----HcCCCeeEE
Q 019711 140 PIEIYEYESCPFCRKVREIVA----VLDLDVLYY 169 (337)
Q Consensus 140 ~l~LY~~~~cP~c~kVr~~L~----elgl~ye~~ 169 (337)
.+..|...+||.|++-.-.+. +.|+++..+
T Consensus 77 vvl~F~atwCp~C~~~lp~l~~~~~~~~~~vv~I 110 (189)
T TIGR02661 77 TLLMFTAPSCPVCDKLFPIIKSIARAEETDVVMI 110 (189)
T ss_pred EEEEEECCCChhHHHHHHHHHHHHHhcCCcEEEE
Confidence 355566779999998655443 335554443
No 301
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=53.91 E-value=34 Score=27.91 Aligned_cols=61 Identities=15% Similarity=0.046 Sum_probs=44.6
Q ss_pred hhcCCCcchhhHhHHhhcc-CceEEEEcCCCCCChHHHHHHcCCCCccEEEcCCCCeeeecHHH
Q 019711 264 AYEGSPFCKVVREVLVELE-LPHLQRSCARGSPKRQILIEKAKHFQVPYLEDPNTGVQMFESAD 326 (337)
Q Consensus 264 ~l~~sPf~~gvr~tLADl~-L~~~l~~v~~g~pk~~e~~~~~p~~qVP~L~d~~~g~~l~ES~~ 326 (337)
.++.|-|+..+--.|..++ +.|..+++-.+..-|+.+.+.+.+-++|.|.- +|.-+..|.-
T Consensus 26 ~~P~CGFS~~~vqiL~~~g~v~~~~vnVL~d~eiR~~lk~~s~WPT~PQLyi--~GEfvGG~DI 87 (105)
T COG0278 26 EFPQCGFSAQAVQILSACGVVDFAYVDVLQDPEIRQGLKEYSNWPTFPQLYV--NGEFVGGCDI 87 (105)
T ss_pred CCCCCCccHHHHHHHHHcCCcceeEEeeccCHHHHhccHhhcCCCCCceeeE--CCEEeccHHH
Confidence 3457889999999999999 67777777666556777777778889999966 3544444433
No 302
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=53.67 E-value=68 Score=25.61 Aligned_cols=58 Identities=16% Similarity=0.309 Sum_probs=36.2
Q ss_pred eecCCCcCHHHHHH-HH------HHcCCCeeEEEcCCCCCCChhHHHhhCCCCCcCeE--EcCCCCee
Q 019711 144 YEYESCPFCRKVRE-IV------AVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYM--VDPNTGVS 202 (337)
Q Consensus 144 Y~~~~cP~c~kVr~-~L------~elgl~ye~~~v~~~~~~~~~e~~~~np~~kVP~L--vd~~~g~~ 202 (337)
++.++|++|.+... ++ +.++-.|-.+.++.... ...+|....+...+|++ +++.+|..
T Consensus 24 ~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~-e~~~~~~~~~~~~~P~~~~i~~~~g~~ 90 (114)
T cd02958 24 LQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSS-EGQRFLQSYKVDKYPHIAIIDPRTGEV 90 (114)
T ss_pred EecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCc-cHHHHHHHhCccCCCeEEEEeCccCcE
Confidence 45679999998633 33 22333566666653332 34578888889999988 45435543
No 303
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=53.55 E-value=77 Score=27.40 Aligned_cols=32 Identities=16% Similarity=0.558 Sum_probs=21.3
Q ss_pred eEEeecCCCcCHHHHHHHHHHc----CCCeeEEEcC
Q 019711 141 IEIYEYESCPFCRKVREIVAVL----DLDVLYYPCP 172 (337)
Q Consensus 141 l~LY~~~~cP~c~kVr~~L~el----gl~ye~~~v~ 172 (337)
+..|...+||+|++-.-.|+++ |+.+-.+.++
T Consensus 54 lvnFWAsWCppCr~e~P~L~~l~~~~~~~Vi~Vs~d 89 (153)
T TIGR02738 54 LVFFYQSTCPYCHQFAPVLKRFSQQFGLPVYAFSLD 89 (153)
T ss_pred EEEEECCCChhHHHHHHHHHHHHHHcCCcEEEEEeC
Confidence 5556667999999887777654 5554444443
No 304
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=52.97 E-value=20 Score=29.70 Aligned_cols=48 Identities=27% Similarity=0.340 Sum_probs=28.3
Q ss_pred CCcCHHHHHHHHHHc-----CCCeeEEEcCCCCCCChhHHHhhCCCCCcCeEEc
Q 019711 148 SCPFCRKVREIVAVL-----DLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVD 196 (337)
Q Consensus 148 ~cP~c~kVr~~L~el-----gl~ye~~~v~~~~~~~~~e~~~~np~~kVP~Lvd 196 (337)
+||.|++-...|.++ +-.++.+-|....+..-.+|.+..+ ..+|++.|
T Consensus 40 ~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~-~~~~~~~D 92 (146)
T PF08534_consen 40 WCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREFLKKYG-INFPVLSD 92 (146)
T ss_dssp TSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHHTT-TTSEEEEE
T ss_pred CCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHHHHhhC-CCceEEec
Confidence 799999887666554 3334444443122222556776633 36888777
No 305
>PLN02309 5'-adenylylsulfate reductase
Probab=51.69 E-value=65 Score=33.14 Aligned_cols=58 Identities=19% Similarity=0.252 Sum_probs=35.2
Q ss_pred CCCCceEEeecCCCcCHHHHHHHHHHc-----CCCeeEEEcCCCCCCChhHHHh-hCCCCCcCeEE
Q 019711 136 RPEKPIEIYEYESCPFCRKVREIVAVL-----DLDVLYYPCPRNGPNFRPKVLQ-MGGKKQFPYMV 195 (337)
Q Consensus 136 ~~~~~l~LY~~~~cP~c~kVr~~L~el-----gl~ye~~~v~~~~~~~~~e~~~-~np~~kVP~Lv 195 (337)
+.+.-+..|+-++|++|+...-.++++ +-.+.+..|+-.+. . .++.+ ...-..+|.|+
T Consensus 364 ~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~-~-~~la~~~~~I~~~PTil 427 (457)
T PLN02309 364 RKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGD-Q-KEFAKQELQLGSFPTIL 427 (457)
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCc-c-hHHHHhhCCCceeeEEE
Confidence 444557778889999999877666554 22344444432212 1 24443 46778999984
No 306
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=51.69 E-value=22 Score=30.29 Aligned_cols=25 Identities=16% Similarity=0.394 Sum_probs=19.3
Q ss_pred CCceEEeecCCCcCHHHHHHHHHHc
Q 019711 138 EKPIEIYEYESCPFCRKVREIVAVL 162 (337)
Q Consensus 138 ~~~l~LY~~~~cP~c~kVr~~L~el 162 (337)
.-.|..|....||+|++....+..+
T Consensus 16 ~~~i~~f~D~~Cp~C~~~~~~~~~~ 40 (178)
T cd03019 16 KPEVIEFFSYGCPHCYNFEPILEAW 40 (178)
T ss_pred CcEEEEEECCCCcchhhhhHHHHHH
Confidence 4457777778999999998877654
No 307
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=51.28 E-value=49 Score=29.17 Aligned_cols=61 Identities=10% Similarity=0.045 Sum_probs=37.1
Q ss_pred eEEeecCCCcCHHHHHHHHHHcCC---CeeEEEcCCCCCCChhHHHhhCCCCCcCeEEcCCCCeeEec
Q 019711 141 IEIYEYESCPFCRKVREIVAVLDL---DVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYE 205 (337)
Q Consensus 141 l~LY~~~~cP~c~kVr~~L~elgl---~ye~~~v~~~~~~~~~e~~~~np~~kVP~Lvd~~~g~~l~E 205 (337)
+..|+.++|+.|+.+.-.|+.+-- .+..+.|+.. .. +..+..+-..+|+|+.=.+|..+..
T Consensus 87 VV~Fya~wc~~Ck~m~~~l~~LA~~~~~vkF~kVd~d--~~--~l~~~f~v~~vPTlllyk~G~~v~~ 150 (175)
T cd02987 87 VVHIYEPGIPGCAALNSSLLCLAAEYPAVKFCKIRAS--AT--GASDEFDTDALPALLVYKGGELIGN 150 (175)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHHCCCeEEEEEecc--ch--hhHHhCCCCCCCEEEEEECCEEEEE
Confidence 334556899999988766655521 2444444321 11 5677788889999853236655443
No 308
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=50.52 E-value=70 Score=23.83 Aligned_cols=55 Identities=15% Similarity=0.226 Sum_probs=37.4
Q ss_pred hhhhhcCCCcchhh----HhHHhhccCceEEEEcCCCCCChHHHHHHcCCCCccEEEcCCCCeeeec
Q 019711 261 EVWAYEGSPFCKVV----REVLVELELPHLQRSCARGSPKRQILIEKAKHFQVPYLEDPNTGVQMFE 323 (337)
Q Consensus 261 ~l~~l~~sPf~~gv----r~tLADl~L~~~l~~v~~g~pk~~e~~~~~p~~qVP~L~d~~~g~~l~E 323 (337)
.+|. .+||+|... +..+++++..+++..++. .++ ....+-..+|++.- +|..++.
T Consensus 4 ~~~a-~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~~----~~~-a~~~~v~~vPti~i--~G~~~~~ 62 (76)
T TIGR00412 4 QIYG-TGCANCQMTEKNVKKAVEELGIDAEFEKVTD----MNE-ILEAGVTATPGVAV--DGELVIM 62 (76)
T ss_pred EEEC-CCCcCHHHHHHHHHHHHHHcCCCeEEEEeCC----HHH-HHHcCCCcCCEEEE--CCEEEEE
Confidence 3444 789999987 567777888888877762 223 34467778999977 3544443
No 309
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=49.63 E-value=88 Score=23.22 Aligned_cols=52 Identities=25% Similarity=0.337 Sum_probs=34.5
Q ss_pred cCCCcchhh----HhHHhhccCceEEEEcCCCCCChHHHHHHcCCCCccEEEcCCCCeeeecH
Q 019711 266 EGSPFCKVV----REVLVELELPHLQRSCARGSPKRQILIEKAKHFQVPYLEDPNTGVQMFES 324 (337)
Q Consensus 266 ~~sPf~~gv----r~tLADl~L~~~l~~v~~g~pk~~e~~~~~p~~qVP~L~d~~~g~~l~ES 324 (337)
.+||+|... +..+.+.++.++++.+ ...+++ .+++-..+|.|+- +|...|..
T Consensus 8 ~~C~~C~~~~~~~~~~~~~~~i~~ei~~~----~~~~~~-~~ygv~~vPalvI--ng~~~~~G 63 (76)
T PF13192_consen 8 PGCPYCPELVQLLKEAAEELGIEVEIIDI----EDFEEI-EKYGVMSVPALVI--NGKVVFVG 63 (76)
T ss_dssp SSCTTHHHHHHHHHHHHHHTTEEEEEEET----TTHHHH-HHTT-SSSSEEEE--TTEEEEES
T ss_pred CCCCCcHHHHHHHHHHHHhcCCeEEEEEc----cCHHHH-HHcCCCCCCEEEE--CCEEEEEe
Confidence 459999854 4566667777777765 235556 8888889999977 35554443
No 310
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=49.60 E-value=51 Score=25.11 Aligned_cols=53 Identities=15% Similarity=0.167 Sum_probs=30.9
Q ss_pred CceEEeecCCCcCHHHHHHHHHHcC------CCeeEEEcCCCCCCChhHHHhhCCCCCcCeEE
Q 019711 139 KPIEIYEYESCPFCRKVREIVAVLD------LDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMV 195 (337)
Q Consensus 139 ~~l~LY~~~~cP~c~kVr~~L~elg------l~ye~~~v~~~~~~~~~e~~~~np~~kVP~Lv 195 (337)
..+.+|..++|+.|+.....++++. ..+....++.... +.........+|.++
T Consensus 20 ~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~----~~~~~~~~~~~Pt~~ 78 (104)
T cd02995 20 DVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN----DVPSEFVVDGFPTIL 78 (104)
T ss_pred cEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch----hhhhhccCCCCCEEE
Confidence 3456677789999999877776542 1244444431111 233333447999874
No 311
>cd03200 GST_C_JTV1 GST_C family, JTV-1 subfamily; composed of uncharacterized proteins with similarity to the translation product of the human JTV-1 gene. Human JTV-1, a gene of unknown function, initiates within the human PMS2 gene promoter, but is transcribed from the opposite strand. PMS2 encodes a protein involved in DNA mismatch repair and is mutated in a subset of patients with hereditary nonpolyposis colon cancer. It is unknown whether the expression of JTV-1 affects that of PMS2, or vice versa, as a result of their juxtaposition. JTV-1 is up-regulated while PMS2 is down-regulated in tumor cell spheroids that show increased resistance to anticancer cytotoxic drugs compared with tumor cell monolayers indicating that suppressed DNA mismatch repair may be a mechanism for multicellular resistance to alkylating agents.
Probab=47.55 E-value=2.5 Score=33.46 Aligned_cols=41 Identities=10% Similarity=-0.019 Sum_probs=28.2
Q ss_pred hhcCCCcchhhHhHHhhccCceEEEEcCC---CCCChHHHHHHc
Q 019711 264 AYEGSPFCKVVREVLVELELPHLQRSCAR---GSPKRQILIEKA 304 (337)
Q Consensus 264 ~l~~sPf~~gvr~tLADl~L~~~l~~v~~---g~pk~~e~~~~~ 304 (337)
.+..++|+.|++++++|+.+.+.+.+... .-|+..+|+++.
T Consensus 50 ~L~~~~fl~Gd~~tiADi~l~~~l~~~~~~~~~~p~l~~w~~r~ 93 (96)
T cd03200 50 ALGRSPWLVGSEFTVADIVSWCALLQTGLASAAPANVQRWLKSC 93 (96)
T ss_pred HHcCCCccCCCCCCHHHHHHHHHHHHcccccccChHHHHHHHHH
Confidence 45678999999999999987654433221 126677777654
No 312
>cd03188 GST_C_Beta GST_C family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site for
Probab=47.53 E-value=2.1 Score=33.74 Aligned_cols=41 Identities=15% Similarity=0.134 Sum_probs=27.4
Q ss_pred hhcCCCcchhhHhHHhhccCceEEEEcC-----C-CCCChHHHHHHc
Q 019711 264 AYEGSPFCKVVREVLVELELPHLQRSCA-----R-GSPKRQILIEKA 304 (337)
Q Consensus 264 ~l~~sPf~~gvr~tLADl~L~~~l~~v~-----~-g~pk~~e~~~~~ 304 (337)
.+.+++|+.|+++|++|+.+.+.+.++. . ..|+..+|+++.
T Consensus 58 ~l~~~~~l~G~~~t~aDi~~~~~~~~~~~~~~~~~~~p~l~~w~~~~ 104 (114)
T cd03188 58 QLAGGPYLLGDRFSVADAYLFVVLRWAPGVGLDLSDWPNLAAYLARV 104 (114)
T ss_pred HhcCCCeeeCCCcchHHHHHHHHHHHHhhcCCChhhChHHHHHHHHH
Confidence 3456899999999999998754332221 1 125677777765
No 313
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=47.21 E-value=75 Score=26.93 Aligned_cols=21 Identities=14% Similarity=0.093 Sum_probs=14.0
Q ss_pred ceEEeecCCCcCHHHHHHHHH
Q 019711 140 PIEIYEYESCPFCRKVREIVA 160 (337)
Q Consensus 140 ~l~LY~~~~cP~c~kVr~~L~ 160 (337)
.+..|...+||.|++..-.+.
T Consensus 64 ~~l~f~a~~C~~C~~~~~~l~ 84 (173)
T PRK03147 64 VFLNFWGTWCKPCEKEMPYMN 84 (173)
T ss_pred EEEEEECCcCHHHHHHHHHHH
Confidence 344455779999998654443
No 314
>cd03179 GST_C_1 GST_C family, unknown subfamily 1; composed of uncharacterized bacterial proteins, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=47.03 E-value=3.8 Score=31.75 Aligned_cols=39 Identities=10% Similarity=0.177 Sum_probs=25.8
Q ss_pred hcCCCcchhhHhHHhhccCceEEEEcCC------CCCChHHHHHH
Q 019711 265 YEGSPFCKVVREVLVELELPHLQRSCAR------GSPKRQILIEK 303 (337)
Q Consensus 265 l~~sPf~~gvr~tLADl~L~~~l~~v~~------g~pk~~e~~~~ 303 (337)
+.+++|+.|++++++|+.+.+.+.++.. .-|+..+|.++
T Consensus 59 L~~~~~l~g~~~slaDi~~~~~~~~~~~~~~~~~~~p~l~~~~~~ 103 (105)
T cd03179 59 LAGRDFLVGDALTIADIALAAYTHVADEGGFDLADYPAIRAWLAR 103 (105)
T ss_pred HccCccccCCCCCHHHHHHHHHHHhccccCCChHhCccHHHHHHh
Confidence 4567899999999999998644333221 12556666654
No 315
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=46.36 E-value=67 Score=26.26 Aligned_cols=21 Identities=19% Similarity=0.325 Sum_probs=14.2
Q ss_pred eEEeecCCCcCHHHHHHHHHH
Q 019711 141 IEIYEYESCPFCRKVREIVAV 161 (337)
Q Consensus 141 l~LY~~~~cP~c~kVr~~L~e 161 (337)
+..|...+|+.|++..-.|.+
T Consensus 21 ll~F~atwC~~C~~~~p~l~~ 41 (132)
T cd02964 21 GLYFSASWCPPCRAFTPKLVE 41 (132)
T ss_pred EEEEECCCCchHHHHHHHHHH
Confidence 333456799999987666543
No 316
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=46.29 E-value=46 Score=27.08 Aligned_cols=50 Identities=22% Similarity=0.294 Sum_probs=27.3
Q ss_pred CCCcCHHHHHHHHHHc-----CCCeeEEEcCCCCCCChhHHHhhCCCCCcCeEEcC
Q 019711 147 ESCPFCRKVREIVAVL-----DLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDP 197 (337)
Q Consensus 147 ~~cP~c~kVr~~L~el-----gl~ye~~~v~~~~~~~~~e~~~~np~~kVP~Lvd~ 197 (337)
.+||.|.+-...|.++ +-.++.+-|.......-.+|.+.++. .+|++.|+
T Consensus 34 ~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~-~~~~l~D~ 88 (140)
T cd03017 34 DDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAKFAEKYGL-PFPLLSDP 88 (140)
T ss_pred CCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCC-CceEEECC
Confidence 5799998754444332 12344555532222233456666654 58888773
No 317
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=45.48 E-value=24 Score=28.01 Aligned_cols=52 Identities=25% Similarity=0.406 Sum_probs=28.5
Q ss_pred eecCCCcCHHHHHHHHHHc-----CCCeeEEEcCCCCCCChhHHHhhCCCCCcCeEEc
Q 019711 144 YEYESCPFCRKVREIVAVL-----DLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVD 196 (337)
Q Consensus 144 Y~~~~cP~c~kVr~~L~el-----gl~ye~~~v~~~~~~~~~e~~~~np~~kVP~Lvd 196 (337)
|...+||.|.+....|.++ ...+..+-|.......-.+|.+..+ -.+|++.|
T Consensus 33 ~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~-~~~~~~~D 89 (124)
T PF00578_consen 33 WPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEYG-LPFPVLSD 89 (124)
T ss_dssp ESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHHT-CSSEEEEE
T ss_pred eCccCccccccchhHHHHHhhhhccceEEeeecccccccchhhhhhhhc-cccccccC
Confidence 3333799998887666654 2234444442222112234554444 57788887
No 318
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=45.36 E-value=6.7 Score=33.03 Aligned_cols=71 Identities=14% Similarity=0.193 Sum_probs=33.8
Q ss_pred CceEEeecCCCcCHHHHHHHH----HHc-CCCeeEEEcCCCCCCChhHHHhhCCCCCcCeEEcC-CCCee---EecchhH
Q 019711 139 KPIEIYEYESCPFCRKVREIV----AVL-DLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDP-NTGVS---MYESDNI 209 (337)
Q Consensus 139 ~~l~LY~~~~cP~c~kVr~~L----~el-gl~ye~~~v~~~~~~~~~e~~~~np~~kVP~Lvd~-~~g~~---l~ES~aI 209 (337)
..+.++.-.|||.|+...=++ ++. ++++.++..+.+. ..-+.|+. ++..+||.++.- ++|.. ..|--..
T Consensus 43 ~~ilvi~e~WCgD~~~~vP~l~kiae~~p~i~~~~i~rd~~~-el~~~~lt-~g~~~IP~~I~~d~~~~~lg~wgerP~~ 120 (129)
T PF14595_consen 43 YNILVITETWCGDCARNVPVLAKIAEANPNIEVRIILRDENK-ELMDQYLT-NGGRSIPTFIFLDKDGKELGRWGERPKE 120 (129)
T ss_dssp EEEEEE--TT-HHHHHHHHHHHHHHHH-TTEEEEEE-HHHHH-HHTTTTTT--SS--SSEEEEE-TT--EEEEEESS-HH
T ss_pred cEEEEEECCCchhHHHHHHHHHHHHHhCCCCeEEEEEecCCh-hHHHHHHh-CCCeecCEEEEEcCCCCEeEEEcCCCHH
Confidence 356677778999999875544 334 6666666543211 12234555 888999998532 24443 3444444
Q ss_pred HH
Q 019711 210 IK 211 (337)
Q Consensus 210 i~ 211 (337)
++
T Consensus 121 ~~ 122 (129)
T PF14595_consen 121 VQ 122 (129)
T ss_dssp HH
T ss_pred Hh
Confidence 43
No 319
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=45.32 E-value=62 Score=25.71 Aligned_cols=56 Identities=21% Similarity=0.304 Sum_probs=30.0
Q ss_pred ceEEeecCCCcCHHHHHHHHHHcCCCeeEEEc--CCCCCCChhHHHhhCCCCCcCeEEc
Q 019711 140 PIEIYEYESCPFCRKVREIVAVLDLDVLYYPC--PRNGPNFRPKVLQMGGKKQFPYMVD 196 (337)
Q Consensus 140 ~l~LY~~~~cP~c~kVr~~L~elgl~ye~~~v--~~~~~~~~~e~~~~np~~kVP~Lvd 196 (337)
.+..|...+||.|+...-.|..+.-.+..+-| +......-.+|.+.++. .+|.+.|
T Consensus 23 ~vl~F~~~~C~~C~~~~~~l~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~-~~~~~~d 80 (123)
T cd03011 23 VLVYFWATWCPVCRFTSPTVNQLAADYPVVSVALRSGDDGAVARFMQKKGY-GFPVIND 80 (123)
T ss_pred EEEEEECCcChhhhhhChHHHHHHhhCCEEEEEccCCCHHHHHHHHHHcCC-CccEEEC
Confidence 34555677899999886666554322444333 22212222345555543 5676665
No 320
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=44.97 E-value=66 Score=26.09 Aligned_cols=63 Identities=17% Similarity=0.156 Sum_probs=41.0
Q ss_pred CCceEE-eecCCCcCHHHHHHHHHHcCC-----CeeEEEcCCCCCCChhHHHhhCCCCCcCeEEcCCCCeeEec
Q 019711 138 EKPIEI-YEYESCPFCRKVREIVAVLDL-----DVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYE 205 (337)
Q Consensus 138 ~~~l~L-Y~~~~cP~c~kVr~~L~elgl-----~ye~~~v~~~~~~~~~e~~~~np~~kVP~Lvd~~~g~~l~E 205 (337)
.+.+.+ |.-.||+.|+.+.=.++++-. .+-.++|+. -.++.+...-..+|+++--.+|..+.+
T Consensus 21 ~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~v~Flkvdvde-----~~~~~~~~~V~~~PTf~f~k~g~~~~~ 89 (106)
T KOG0907|consen 21 DKLVVVDFYATWCGPCKAIAPKFEKLAEKYPDVVFLKVDVDE-----LEEVAKEFNVKAMPTFVFYKGGEEVDE 89 (106)
T ss_pred CCeEEEEEECCCCcchhhhhhHHHHHHHHCCCCEEEEEeccc-----CHhHHHhcCceEeeEEEEEECCEEEEE
Confidence 344333 556799999999888777643 333455532 457888888889999853336654443
No 321
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=44.75 E-value=18 Score=30.30 Aligned_cols=25 Identities=20% Similarity=0.369 Sum_probs=18.7
Q ss_pred CCCceEEeecCCCcCHHHHHHHHHH
Q 019711 137 PEKPIEIYEYESCPFCRKVREIVAV 161 (337)
Q Consensus 137 ~~~~l~LY~~~~cP~c~kVr~~L~e 161 (337)
..-.|++|.-..||+|++....+..
T Consensus 12 a~~~v~~f~d~~Cp~C~~~~~~~~~ 36 (162)
T PF13462_consen 12 APITVTEFFDFQCPHCAKFHEELEK 36 (162)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHH
T ss_pred CCeEEEEEECCCCHhHHHHHHHHhh
Confidence 3446888999999999998776643
No 322
>cd03184 GST_C_Omega GST_C family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a re
Probab=44.25 E-value=3.3 Score=33.82 Aligned_cols=58 Identities=14% Similarity=0.132 Sum_probs=37.3
Q ss_pred CCcchhhHhHHhhccCceEEEE-----------c-CCCCCChHHHHHHcCCCCccEEEcCCCCeeeecHHHHHHHHH
Q 019711 268 SPFCKVVREVLVELELPHLQRS-----------C-ARGSPKRQILIEKAKHFQVPYLEDPNTGVQMFESADIVEYLR 332 (337)
Q Consensus 268 sPf~~gvr~tLADl~L~~~l~~-----------v-~~g~pk~~e~~~~~p~~qVP~L~d~~~g~~l~ES~~I~~YL~ 332 (337)
+||+.|+++|++|+.+...+.+ . ...-|+...|+++. .+.|.+.. .+.+...+++|+.
T Consensus 53 ~~yl~G~~~t~aDi~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~w~~r~--~~~p~v~~-----~~~~~~~~~~~~~ 122 (124)
T cd03184 53 TPFFGGDSPGMVDYMIWPWFERLEALKLLLGYEFPLDRFPKLKKWMDAM--KEDPAVQA-----FYTDTEIHAEFLK 122 (124)
T ss_pred CCCcCCCCccHHHHHhhHHHHHHHHHHhhccccCCcccChHHHHHHHHh--ccChHHHH-----HhCCHHHHHHHHh
Confidence 7999999999999976533211 1 12237899999988 34666544 2334445556653
No 323
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=43.02 E-value=46 Score=27.03 Aligned_cols=58 Identities=17% Similarity=0.236 Sum_probs=32.4
Q ss_pred ceEEeec--CCCcCHHHHHHHHHHc-----CCCeeEEEcCCCCCCChhHHHhhCCCCCcCeEEcC
Q 019711 140 PIEIYEY--ESCPFCRKVREIVAVL-----DLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDP 197 (337)
Q Consensus 140 ~l~LY~~--~~cP~c~kVr~~L~el-----gl~ye~~~v~~~~~~~~~e~~~~np~~kVP~Lvd~ 197 (337)
.+.|+.+ .+||.|.+-...|.++ .-.+..+-|..+.......|.+..+..++|+|.|+
T Consensus 24 ~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~~~~~~~~~~~~~~~~~~~l~D~ 88 (140)
T cd02971 24 WVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDSPFSHKAWAEKEGGLNFPLLSDP 88 (140)
T ss_pred eEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcccCCCceEEECC
Confidence 3444443 4799999865555543 12344554432222223456666656688888873
No 324
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=42.61 E-value=58 Score=27.18 Aligned_cols=59 Identities=17% Similarity=0.211 Sum_probs=30.3
Q ss_pred CCCcCHHHHHHHHHH----cCCCeeE--EEc-C---CCCCCChhHHHh--hCCCCCcCeEEcCCCCeeEecch
Q 019711 147 ESCPFCRKVREIVAV----LDLDVLY--YPC-P---RNGPNFRPKVLQ--MGGKKQFPYMVDPNTGVSMYESD 207 (337)
Q Consensus 147 ~~cP~c~kVr~~L~e----lgl~ye~--~~v-~---~~~~~~~~e~~~--~np~~kVP~Lvd~~~g~~l~ES~ 207 (337)
.|||.|+++.-.+++ ..-+..+ +.| + -+++ .-.|++ ......||+|+-=+++..|.|..
T Consensus 36 sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp--~n~fR~~p~~~l~~IPTLi~~~~~~rL~e~e 106 (119)
T PF06110_consen 36 SWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDP--NNPFRTDPDLKLKGIPTLIRWETGERLVEEE 106 (119)
T ss_dssp BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-T--TSHHHH--CC---SSSEEEECTSS-EEEHHH
T ss_pred cccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCC--CCCceEcceeeeeecceEEEECCCCccchhh
Confidence 489999998755544 3223444 444 2 1111 124665 45677899997544556677643
No 325
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=42.42 E-value=76 Score=31.37 Aligned_cols=77 Identities=16% Similarity=0.167 Sum_probs=45.9
Q ss_pred ceEEeecCCCcCHHHHHHHHHH-------cCCCeeEEEcCCCCCCChhHHHhhCCCCCcCeEE-cCCCCe--eE----ec
Q 019711 140 PIEIYEYESCPFCRKVREIVAV-------LDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMV-DPNTGV--SM----YE 205 (337)
Q Consensus 140 ~l~LY~~~~cP~c~kVr~~L~e-------lgl~ye~~~v~~~~~~~~~e~~~~np~~kVP~Lv-d~~~g~--~l----~E 205 (337)
.+.+|..+||+.|++..-.+.+ .+-.+....|+.. ...++.+..+-..+|.++ ..+++. .- ..
T Consensus 21 ~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~---~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~~~ 97 (462)
T TIGR01130 21 VLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDAT---EEKDLAQKYGVSGYPTLKIFRNGEDSVSDYNGPRD 97 (462)
T ss_pred EEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECC---CcHHHHHhCCCccccEEEEEeCCccceeEecCCCC
Confidence 4666777899999987654433 2312343333211 124677777888899883 222332 22 24
Q ss_pred chhHHHHHhhccCC
Q 019711 206 SDNIIKYLVGKYGD 219 (337)
Q Consensus 206 S~aIi~YL~~~y~~ 219 (337)
..+|..|+.+..+.
T Consensus 98 ~~~l~~~i~~~~~~ 111 (462)
T TIGR01130 98 ADGIVKYMKKQSGP 111 (462)
T ss_pred HHHHHHHHHHhcCC
Confidence 67788899887664
No 326
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=42.21 E-value=68 Score=25.87 Aligned_cols=55 Identities=15% Similarity=0.086 Sum_probs=32.2
Q ss_pred ceEEeecCCCcCHHHHHHHHHHcCCC-------eeEEEcCCCCCCChhHHHhhCCCCCcCeEE
Q 019711 140 PIEIYEYESCPFCRKVREIVAVLDLD-------VLYYPCPRNGPNFRPKVLQMGGKKQFPYMV 195 (337)
Q Consensus 140 ~l~LY~~~~cP~c~kVr~~L~elgl~-------ye~~~v~~~~~~~~~e~~~~np~~kVP~Lv 195 (337)
-+..|..++|+.|+...-.++.+.-. +....++-..+ ..+++.+...-..+|.++
T Consensus 22 vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~-~~~~~~~~~~i~~~Pt~~ 83 (114)
T cd02992 22 WLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADE-ENVALCRDFGVTGYPTLR 83 (114)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccch-hhHHHHHhCCCCCCCEEE
Confidence 35567778999999877666554221 22222221111 224566777778899874
No 327
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=41.78 E-value=1e+02 Score=31.73 Aligned_cols=53 Identities=17% Similarity=0.276 Sum_probs=32.1
Q ss_pred CceEEeecCCCcCHHHHHHHHHHc-------CCCeeEEEcCCCCCCChhHHH-hhCCCCCcCeEE
Q 019711 139 KPIEIYEYESCPFCRKVREIVAVL-------DLDVLYYPCPRNGPNFRPKVL-QMGGKKQFPYMV 195 (337)
Q Consensus 139 ~~l~LY~~~~cP~c~kVr~~L~el-------gl~ye~~~v~~~~~~~~~e~~-~~np~~kVP~Lv 195 (337)
.-+..|+-++|++|+...-.++++ ++.+-.++|+. + ..++. +...-..+|.++
T Consensus 373 ~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~--~--~~~~~~~~~~I~~~PTii 433 (463)
T TIGR00424 373 AWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADG--D--QKEFAKQELQLGSFPTIL 433 (463)
T ss_pred eEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCC--C--ccHHHHHHcCCCccceEE
Confidence 345667788999999887666554 23333444431 1 11333 456777999884
No 328
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=41.58 E-value=30 Score=30.28 Aligned_cols=32 Identities=28% Similarity=0.665 Sum_probs=22.2
Q ss_pred eEEeecCCCcCHHHHH----HHHHHc----CCCeeEEEcC
Q 019711 141 IEIYEYESCPFCRKVR----EIVAVL----DLDVLYYPCP 172 (337)
Q Consensus 141 l~LY~~~~cP~c~kVr----~~L~el----gl~ye~~~v~ 172 (337)
|++|....||+|.-.. .++++. +++++++++.
T Consensus 1 I~~~~D~~cP~cyl~~~~l~~~~~~~~~~~~~~v~~~p~~ 40 (201)
T cd03024 1 IDIWSDVVCPWCYIGKRRLEKALAELGDEVDVEIEWRPFE 40 (201)
T ss_pred CeEEecCcCccHHHHHHHHHHHHHhCCCCCceEEEEeeee
Confidence 4678888999999554 444555 5777777763
No 329
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=41.17 E-value=98 Score=27.48 Aligned_cols=82 Identities=18% Similarity=0.306 Sum_probs=49.0
Q ss_pred CCCCCceEEeecCCCcCHHHH----------HHHHHHc------CCCeeE-EEcCCCCC---CChhHHHhhCCCCCcCeE
Q 019711 135 PRPEKPIEIYEYESCPFCRKV----------REIVAVL------DLDVLY-YPCPRNGP---NFRPKVLQMGGKKQFPYM 194 (337)
Q Consensus 135 ~~~~~~l~LY~~~~cP~c~kV----------r~~L~el------gl~ye~-~~v~~~~~---~~~~e~~~~np~~kVP~L 194 (337)
+...-.+-+++-++|+||.+. |++|.+. ++.+.. +....++. ....|+.+...-+..|.+
T Consensus 40 ~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~vrstPtf 119 (182)
T COG2143 40 PNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAVRSTPTF 119 (182)
T ss_pred ccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHHhccccCceE
Confidence 455566888999999999764 4455442 221111 00011111 123578888899999987
Q ss_pred E--cCCCCeeEec---------chhHHHHHhhcc
Q 019711 195 V--DPNTGVSMYE---------SDNIIKYLVGKY 217 (337)
Q Consensus 195 v--d~~~g~~l~E---------S~aIi~YL~~~y 217 (337)
+ |. +|..|.+ -.+|+.|.++.+
T Consensus 120 vFfdk-~Gk~Il~lPGY~ppe~Fl~vlkYVa~g~ 152 (182)
T COG2143 120 VFFDK-TGKTILELPGYMPPEQFLAVLKYVADGK 152 (182)
T ss_pred EEEcC-CCCEEEecCCCCCHHHHHHHHHHHHHHH
Confidence 4 43 5555554 467888887743
No 330
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=39.82 E-value=31 Score=28.92 Aligned_cols=35 Identities=6% Similarity=-0.046 Sum_probs=29.9
Q ss_pred chhhhhhcCCCcchhhHhHHhhccCceEEEEcCCC
Q 019711 259 PLEVWAYEGSPFCKVVREVLVELELPHLQRSCARG 293 (337)
Q Consensus 259 ~L~l~~l~~sPf~~gvr~tLADl~L~~~l~~v~~g 293 (337)
.+++|++..|.=|++.+-.|.+.++.|+.+++...
T Consensus 2 ~i~iY~~p~Cst~RKA~~~L~~~gi~~~~~d~~~~ 36 (126)
T TIGR01616 2 TIIFYEKPGCANNARQKAALKASGHDVEVQDILKE 36 (126)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHCCCCcEEEeccCC
Confidence 35688888899999999999999999999987654
No 331
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=39.61 E-value=53 Score=27.61 Aligned_cols=64 Identities=23% Similarity=0.324 Sum_probs=35.6
Q ss_pred CCceEEeecCCC-cC-------------HHHHHHHHHHcCCCeeEEEcCCCCCCC-----hhHHHhhCCCCCcCeEEcCC
Q 019711 138 EKPIEIYEYESC-PF-------------CRKVREIVAVLDLDVLYYPCPRNGPNF-----RPKVLQMGGKKQFPYMVDPN 198 (337)
Q Consensus 138 ~~~l~LY~~~~c-P~-------------c~kVr~~L~elgl~ye~~~v~~~~~~~-----~~e~~~~np~~kVP~Lvd~~ 198 (337)
|+.|++|+-..| +- -..+...|++.|++++.+....+...+ -.++++..+...+|+.+.
T Consensus 1 M~~i~ifepamCC~tGvCG~~vd~eL~~~a~~~~~Lk~~gv~v~RyNL~~~P~aF~~n~~V~~~L~~~G~e~LPitlV-- 78 (123)
T PF06953_consen 1 MKKIEIFEPAMCCSTGVCGPSVDPELVRFAADLDWLKEQGVEVERYNLAQNPQAFVENPEVNQLLQTEGAEALPITLV-- 78 (123)
T ss_dssp --EEEEEE-S-SSTTS-SSSS--HHHHHHHHHHHHHHHTT-EEEEEETTT-TTHHHHSHHHHHHHHHH-GGG-SEEEE--
T ss_pred CCceEEeccccccccCccCCCCCHHHHHHHHHHHHHHhCCceEEEEccccCHHHHHhCHHHHHHHHHcCcccCCEEEE--
Confidence 466888887764 11 023445668889999999984332222 134666788899999865
Q ss_pred CCeeE
Q 019711 199 TGVSM 203 (337)
Q Consensus 199 ~g~~l 203 (337)
||..+
T Consensus 79 dGeiv 83 (123)
T PF06953_consen 79 DGEIV 83 (123)
T ss_dssp TTEEE
T ss_pred CCEEE
Confidence 56543
No 332
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=39.01 E-value=61 Score=25.20 Aligned_cols=57 Identities=19% Similarity=0.106 Sum_probs=38.2
Q ss_pred hhhhhhcCCCcchhhHhHHhhcc-----CceEEEEcCCCCCChHHHHHHcCCCCccEEEcCCCCeeee
Q 019711 260 LEVWAYEGSPFCKVVREVLVELE-----LPHLQRSCARGSPKRQILIEKAKHFQVPYLEDPNTGVQMF 322 (337)
Q Consensus 260 L~l~~l~~sPf~~gvr~tLADl~-----L~~~l~~v~~g~pk~~e~~~~~p~~qVP~L~d~~~g~~l~ 322 (337)
+.+|.-.+|+||......+.++. +.+..++++ .-.+..++.+-..+|.++- +|...+
T Consensus 16 i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~----~~~e~a~~~~V~~vPt~vi--dG~~~~ 77 (89)
T cd03026 16 FETYVSLSCHNCPDVVQALNLMAVLNPNIEHEMIDGA----LFQDEVEERGIMSVPAIFL--NGELFG 77 (89)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHHCCCceEEEEEhH----hCHHHHHHcCCccCCEEEE--CCEEEE
Confidence 45666678999998877776663 444444443 2356777888778999986 354444
No 333
>PTZ00102 disulphide isomerase; Provisional
Probab=38.59 E-value=1.2e+02 Score=30.48 Aligned_cols=79 Identities=11% Similarity=0.148 Sum_probs=46.7
Q ss_pred CCceEEeecCCCcCHHHHHHHHHH-------cCCCeeEEEcCCCCCCChhHHHhhCCCCCcCeEE-cCCCCeeE----ec
Q 019711 138 EKPIEIYEYESCPFCRKVREIVAV-------LDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMV-DPNTGVSM----YE 205 (337)
Q Consensus 138 ~~~l~LY~~~~cP~c~kVr~~L~e-------lgl~ye~~~v~~~~~~~~~e~~~~np~~kVP~Lv-d~~~g~~l----~E 205 (337)
..-+..|..+||++|++..-.+++ .+-++....|+.. ...++.+..+-..+|.++ -.+++..- ..
T Consensus 50 ~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~---~~~~l~~~~~i~~~Pt~~~~~~g~~~~y~g~~~ 126 (477)
T PTZ00102 50 EIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDAT---EEMELAQEFGVRGYPTIKFFNKGNPVNYSGGRT 126 (477)
T ss_pred CcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECC---CCHHHHHhcCCCcccEEEEEECCceEEecCCCC
Confidence 345677778999999987533322 2333444444311 123566667778899883 22233222 23
Q ss_pred chhHHHHHhhccCC
Q 019711 206 SDNIIKYLVGKYGD 219 (337)
Q Consensus 206 S~aIi~YL~~~y~~ 219 (337)
...|+.||.+..+.
T Consensus 127 ~~~l~~~l~~~~~~ 140 (477)
T PTZ00102 127 ADGIVSWIKKLTGP 140 (477)
T ss_pred HHHHHHHHHHhhCC
Confidence 56788999887664
No 334
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=38.03 E-value=33 Score=29.64 Aligned_cols=33 Identities=24% Similarity=0.550 Sum_probs=25.5
Q ss_pred ceEEeecCCCcCHHHHHHHHHH----c-CCCeeEEEcC
Q 019711 140 PIEIYEYESCPFCRKVREIVAV----L-DLDVLYYPCP 172 (337)
Q Consensus 140 ~l~LY~~~~cP~c~kVr~~L~e----l-gl~ye~~~v~ 172 (337)
+|++|.-..||+|......|.+ . +++++++++.
T Consensus 1 ~i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~~~p~~ 38 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLASPRLRKLRAEYPDVEIEWRPFP 38 (193)
T ss_dssp EEEEEEBTTBHHHHHHHHHHHHHHHHHTTCEEEEEEES
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHhcCCcEEEeccc
Confidence 3778888899999877655544 4 8999999984
No 335
>cd03207 GST_C_8 GST_C family, unknown subfamily 8; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=36.60 E-value=3.7 Score=32.08 Aligned_cols=41 Identities=12% Similarity=0.032 Sum_probs=29.0
Q ss_pred hhcCCCcchhhHhHHhhccCceEEEEcC-----CCCCChHHHHHHc
Q 019711 264 AYEGSPFCKVVREVLVELELPHLQRSCA-----RGSPKRQILIEKA 304 (337)
Q Consensus 264 ~l~~sPf~~gvr~tLADl~L~~~l~~v~-----~g~pk~~e~~~~~ 304 (337)
.+..++|..|++++++|+.+.+.+.+.. ...|+..+|+++.
T Consensus 45 ~l~~~~~l~g~~~t~aDi~~~~~~~~~~~~~~~~~~p~l~~w~~~~ 90 (103)
T cd03207 45 ALAKGPYLLGERFTAADVLVGSPLGWGLQFGLLPERPAFDAYIARI 90 (103)
T ss_pred HHccCCcccCCccCHHHHHHHHHHHHHHHcCCCCCChHHHHHHHHH
Confidence 4456799999999999999854322221 2337888888876
No 336
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=36.01 E-value=77 Score=23.84 Aligned_cols=24 Identities=21% Similarity=0.283 Sum_probs=16.8
Q ss_pred CceEEeecCCCcCHHHHHHHHHHc
Q 019711 139 KPIEIYEYESCPFCRKVREIVAVL 162 (337)
Q Consensus 139 ~~l~LY~~~~cP~c~kVr~~L~el 162 (337)
..+..|...+|+.|.+....+.++
T Consensus 21 ~~ll~f~~~~C~~C~~~~~~l~~~ 44 (116)
T cd02966 21 VVLVNFWASWCPPCRAEMPELEAL 44 (116)
T ss_pred EEEEEeecccChhHHHHhHHHHHH
Confidence 345566677999999876666554
No 337
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=35.99 E-value=42 Score=27.24 Aligned_cols=35 Identities=6% Similarity=0.025 Sum_probs=29.0
Q ss_pred hhhhhhcCCCcchhhHhHHhhccCceEEEEcCCCC
Q 019711 260 LEVWAYEGSPFCKVVREVLVELELPHLQRSCARGS 294 (337)
Q Consensus 260 L~l~~l~~sPf~~gvr~tLADl~L~~~l~~v~~g~ 294 (337)
+++|+...|.=|++..-.|.+.++.|+.+++....
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~di~~~~ 35 (112)
T cd03034 1 ITIYHNPRCSKSRNALALLEEAGIEPEIVEYLKTP 35 (112)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCeEEEecccCC
Confidence 35788888888999999999999999999876543
No 338
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=35.39 E-value=70 Score=26.36 Aligned_cols=50 Identities=16% Similarity=0.138 Sum_probs=27.1
Q ss_pred cCCCcCHHHHHHHHHHc-----CCCeeEEEcCCCCCCChhHHHhhCCCCCcCeEEc
Q 019711 146 YESCPFCRKVREIVAVL-----DLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVD 196 (337)
Q Consensus 146 ~~~cP~c~kVr~~L~el-----gl~ye~~~v~~~~~~~~~e~~~~np~~kVP~Lvd 196 (337)
..+||.|.+....|.++ +..+..+-|..+....-.+|.+..+ ..+|++.|
T Consensus 38 ~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~-~~~~~~~D 92 (149)
T cd03018 38 LAFTPVCTKELCALRDSLELFEAAGAEVLGISVDSPFSLRAWAEENG-LTFPLLSD 92 (149)
T ss_pred CCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCCHHHHHHHHHhcC-CCceEecC
Confidence 45899999766555543 2234444443222222345666655 36777765
No 339
>COG5494 Predicted thioredoxin/glutaredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=35.27 E-value=65 Score=29.89 Aligned_cols=74 Identities=18% Similarity=0.147 Sum_probs=49.2
Q ss_pred CCCceEEeecCCCcCHHHHHHHHHHcCCCeeEEEcCCCCCCChhHHHh-hCCCCCcCeEEcCCCCeeE----ecchhHHH
Q 019711 137 PEKPIEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQ-MGGKKQFPYMVDPNTGVSM----YESDNIIK 211 (337)
Q Consensus 137 ~~~~l~LY~~~~cP~c~kVr~~L~elgl~ye~~~v~~~~~~~~~e~~~-~np~~kVP~Lvd~~~g~~l----~ES~aIi~ 211 (337)
..|++++|....|-.|...-..|+++|+-=...-++. ..+-|.. .+.--.||.+.. ||..+ .|-.+|-.
T Consensus 9 ~~~~VkI~~HktC~ssy~Lf~~L~nkgll~~Vkii~a----~~p~f~~~~~~V~SvP~Vf~--DGel~~~dpVdp~~ies 82 (265)
T COG5494 9 IEMEVKIFTHKTCVSSYMLFEYLENKGLLGKVKIIDA----ELPPFLAFEKGVISVPSVFI--DGELVYADPVDPEEIES 82 (265)
T ss_pred hheEEEEEEecchHHHHHHHHHHHhcCCCCCceEEEc----CCChHHHhhcceeecceEEE--cCeEEEcCCCCHHHHHH
Confidence 4678999999999999999999999988422222221 1223433 356779998865 57654 34566666
Q ss_pred HHhhc
Q 019711 212 YLVGK 216 (337)
Q Consensus 212 YL~~~ 216 (337)
-|.-+
T Consensus 83 ~~~G~ 87 (265)
T COG5494 83 ILSGQ 87 (265)
T ss_pred HHcCc
Confidence 66554
No 340
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=35.02 E-value=73 Score=27.98 Aligned_cols=55 Identities=15% Similarity=0.196 Sum_probs=28.8
Q ss_pred eEEeecCCCcCHHHHHHHHHHcC-CCeeEEEcC-CCCCCChhHHHhhCCCCCcCe-EEc
Q 019711 141 IEIYEYESCPFCRKVREIVAVLD-LDVLYYPCP-RNGPNFRPKVLQMGGKKQFPY-MVD 196 (337)
Q Consensus 141 l~LY~~~~cP~c~kVr~~L~elg-l~ye~~~v~-~~~~~~~~e~~~~np~~kVP~-Lvd 196 (337)
+..|...+||.|++-.-.|.++. -.++.+-|. ......-.+|.+.++. ..|. +.|
T Consensus 72 vv~FwatwC~~C~~e~p~l~~l~~~~~~vi~v~~~~~~~~~~~~~~~~~~-~~~~~~~D 129 (185)
T PRK15412 72 LLNVWATWCPTCRAEHQYLNQLSAQGIRVVGMNYKDDRQKAISWLKELGN-PYALSLFD 129 (185)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHcCCEEEEEECCCCHHHHHHHHHHcCC-CCceEEEc
Confidence 33344569999998766655541 124444443 2222223356666654 4554 455
No 341
>PRK10853 putative reductase; Provisional
Probab=34.14 E-value=41 Score=27.78 Aligned_cols=35 Identities=9% Similarity=0.026 Sum_probs=29.7
Q ss_pred hhhhhhcCCCcchhhHhHHhhccCceEEEEcCCCC
Q 019711 260 LEVWAYEGSPFCKVVREVLVELELPHLQRSCARGS 294 (337)
Q Consensus 260 L~l~~l~~sPf~~gvr~tLADl~L~~~l~~v~~g~ 294 (337)
+++|+...|.=|++..--|.+.++.|+.+++....
T Consensus 2 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~d~~k~p 36 (118)
T PRK10853 2 VTLYGIKNCDTIKKARRWLEAQGIDYRFHDYRVDG 36 (118)
T ss_pred EEEEcCCCCHHHHHHHHHHHHcCCCcEEeehccCC
Confidence 56788888999999999999999999999886544
No 342
>cd03180 GST_C_2 GST_C family, unknown subfamily 2; composed of uncharacterized bacterial proteins, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=33.74 E-value=7.6 Score=30.24 Aligned_cols=41 Identities=17% Similarity=0.172 Sum_probs=28.1
Q ss_pred hhcCCCcchhhHhHHhhccCceEE-EEcC-----CCCCChHHHHHHc
Q 019711 264 AYEGSPFCKVVREVLVELELPHLQ-RSCA-----RGSPKRQILIEKA 304 (337)
Q Consensus 264 ~l~~sPf~~gvr~tLADl~L~~~l-~~v~-----~g~pk~~e~~~~~ 304 (337)
.+.+++|+.|+++|++|+.+.+.+ .+.. ..-|+..+|.+++
T Consensus 58 ~L~~~~~l~g~~~t~aDi~~~~~~~~~~~~~~~~~~~p~l~~~~~~~ 104 (110)
T cd03180 58 QLAGRPYLAGDRFTLADIPLGCSAYRWFELPIERPPLPHLERWYARL 104 (110)
T ss_pred HhCCCCcccCCCCCHHHHHHHHHHHHHHHcccccccCchHHHHHHHH
Confidence 345689999999999999885332 1111 2237888888776
No 343
>PRK10026 arsenate reductase; Provisional
Probab=33.72 E-value=45 Score=28.67 Aligned_cols=35 Identities=3% Similarity=-0.051 Sum_probs=30.0
Q ss_pred chhhhhhcCCCcchhhHhHHhhccCceEEEEcCCC
Q 019711 259 PLEVWAYEGSPFCKVVREVLVELELPHLQRSCARG 293 (337)
Q Consensus 259 ~L~l~~l~~sPf~~gvr~tLADl~L~~~l~~v~~g 293 (337)
.+++|++..|.=|++..-.|.+.++.|+.+++...
T Consensus 3 ~i~iY~~p~Cst~RKA~~wL~~~gi~~~~~d~~~~ 37 (141)
T PRK10026 3 NITIYHNPACGTSRNTLEMIRNSGTEPTIIHYLET 37 (141)
T ss_pred EEEEEeCCCCHHHHHHHHHHHHCCCCcEEEeeeCC
Confidence 46788888999999999999999999999987544
No 344
>cd03204 GST_C_GDAP1 GST_C family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal thioredoxin-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=33.64 E-value=4 Score=33.59 Aligned_cols=37 Identities=11% Similarity=0.046 Sum_probs=25.7
Q ss_pred CCcchhhHhHHhhccCceEEEEcC-----------CCCCChHHHHHHc
Q 019711 268 SPFCKVVREVLVELELPHLQRSCA-----------RGSPKRQILIEKA 304 (337)
Q Consensus 268 sPf~~gvr~tLADl~L~~~l~~v~-----------~g~pk~~e~~~~~ 304 (337)
++|++|+++|++|+.+.+.+.++. ..-|+..+|+++.
T Consensus 58 ~~yL~Gd~~TlADi~l~~~l~~~~~~~~~~~~~~~~~~P~l~~w~~rv 105 (111)
T cd03204 58 QLWLCGDTFTLADISLGVTLHRLKFLGLSRRYWGNGKRPNLEAYFERV 105 (111)
T ss_pred CCccCCCCCCHHHHHHHHHHHHHHHcCccccccccccChHHHHHHHHH
Confidence 479999999999998765443221 1236777777765
No 345
>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=33.54 E-value=37 Score=26.13 Aligned_cols=21 Identities=24% Similarity=0.251 Sum_probs=19.3
Q ss_pred cCHHHHHHHHHHcCCCeeEEE
Q 019711 150 PFCRKVREIVAVLDLDVLYYP 170 (337)
Q Consensus 150 P~c~kVr~~L~elgl~ye~~~ 170 (337)
.||||+..+|++.|+.||..+
T Consensus 16 GF~rk~L~I~E~~~is~Eh~P 36 (76)
T cd04911 16 GFGRKLLSILEDNGISYEHMP 36 (76)
T ss_pred cHHHHHHHHHHHcCCCEeeec
Confidence 489999999999999999876
No 346
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=33.30 E-value=1.9e+02 Score=27.20 Aligned_cols=63 Identities=21% Similarity=0.223 Sum_probs=36.6
Q ss_pred CceEEeecCCCcCHHHHHH----HHHHcCCCeeEEEcCCCCC-CC---hh--HHHhhCCCCCcCeE--EcCCCCe
Q 019711 139 KPIEIYEYESCPFCRKVRE----IVAVLDLDVLYYPCPRNGP-NF---RP--KVLQMGGKKQFPYM--VDPNTGV 201 (337)
Q Consensus 139 ~~l~LY~~~~cP~c~kVr~----~L~elgl~ye~~~v~~~~~-~~---~~--e~~~~np~~kVP~L--vd~~~g~ 201 (337)
-.+.+|.-..||+|.+--- +.+..|+++..+.+|..+. .+ ++ .-.+..+...+|+| ++++++.
T Consensus 145 ~GL~fFy~s~Cp~C~~~aPil~~fa~~yg~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~Lv~~~t~~ 219 (248)
T PRK13703 145 YGLMFFYRGQDPIDGQLAQVINDFRDTYGLSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALMLVDPKSGS 219 (248)
T ss_pred ceEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEEEECCCCc
Confidence 3456666678999997544 4455688887777763221 11 11 11233444678987 5665554
No 347
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=33.29 E-value=84 Score=27.14 Aligned_cols=56 Identities=7% Similarity=0.032 Sum_probs=30.6
Q ss_pred eEEeecC--CCcCHHHHHHHHHHc--C-CCeeEEEcCCCCCCChhHHHhhCCCCCcCeEEc
Q 019711 141 IEIYEYE--SCPFCRKVREIVAVL--D-LDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVD 196 (337)
Q Consensus 141 l~LY~~~--~cP~c~kVr~~L~el--g-l~ye~~~v~~~~~~~~~e~~~~np~~kVP~Lvd 196 (337)
+.|+.++ .||.|.+-.-.|.++ . -.++.+-|..+......+|.+..+...+|+|.|
T Consensus 47 vvl~f~~s~~cp~C~~e~~~l~~~~~~~~~~~vv~vs~D~~~~~~~f~~~~~~~~~~~lsD 107 (167)
T PRK00522 47 KVLNIFPSIDTGVCATSVRKFNQEAAELDNTVVLCISADLPFAQKRFCGAEGLENVITLSD 107 (167)
T ss_pred EEEEEEcCCCCCccHHHHHHHHHHHHHcCCcEEEEEeCCCHHHHHHHHHhCCCCCceEeec
Confidence 4444443 499999866555443 1 134555543222222345777776555777777
No 348
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=33.17 E-value=1.2e+02 Score=24.51 Aligned_cols=52 Identities=13% Similarity=0.086 Sum_probs=28.6
Q ss_pred eecCCCcCHHHHHHHHHHc-----CCCeeEEEcCC---CCCC---ChhHHHhhCCCCCcCeEEc
Q 019711 144 YEYESCPFCRKVREIVAVL-----DLDVLYYPCPR---NGPN---FRPKVLQMGGKKQFPYMVD 196 (337)
Q Consensus 144 Y~~~~cP~c~kVr~~L~el-----gl~ye~~~v~~---~~~~---~~~e~~~~np~~kVP~Lvd 196 (337)
|...+||.|++-.-.|.++ +..++.+-|.. ..+. .-.+|.+.++. .+|++.|
T Consensus 30 F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~-~~p~~~D 92 (126)
T cd03012 30 FWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGI-TYPVAND 92 (126)
T ss_pred EECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcCC-CCCEEEC
Confidence 4455899999876666554 23455555521 1111 12235555544 6888877
No 349
>PTZ00056 glutathione peroxidase; Provisional
Probab=33.06 E-value=1e+02 Score=27.67 Aligned_cols=73 Identities=14% Similarity=0.277 Sum_probs=38.3
Q ss_pred eEEeecCCCcCHHHHHHHHHHc-------CCCeeEEEcCC------CCCCChhHHHhhCCCCCcCeEEcCC-CCeeEecc
Q 019711 141 IEIYEYESCPFCRKVREIVAVL-------DLDVLYYPCPR------NGPNFRPKVLQMGGKKQFPYMVDPN-TGVSMYES 206 (337)
Q Consensus 141 l~LY~~~~cP~c~kVr~~L~el-------gl~ye~~~v~~------~~~~~~~e~~~~np~~kVP~Lvd~~-~g~~l~ES 206 (337)
+.-|-..+||+|++-.-.|.++ |+.+--+.++. .....-.+|.+.++. .+|++.|.+ +| ...
T Consensus 43 lv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~~~~~~e~d~~e~~~~f~~~~~~-~fpvl~d~~v~g---~~~ 118 (199)
T PTZ00056 43 MITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTSQFLNQEFPNTKDIRKFNDKNKI-KYNFFEPIEVNG---ENT 118 (199)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecchhccCCCCCCHHHHHHHHHHcCC-CceeeeeeeccC---Ccc
Confidence 3335556899999755555444 44444444321 111123346665554 688886411 22 134
Q ss_pred hhHHHHHhhcc
Q 019711 207 DNIIKYLVGKY 217 (337)
Q Consensus 207 ~aIi~YL~~~y 217 (337)
..+..||.+..
T Consensus 119 ~~l~~~l~~~~ 129 (199)
T PTZ00056 119 HELFKFLKANC 129 (199)
T ss_pred CHHHHHHHHhC
Confidence 56777776543
No 350
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=33.02 E-value=1e+02 Score=29.22 Aligned_cols=63 Identities=17% Similarity=0.219 Sum_probs=37.7
Q ss_pred CceEEeecCCCcCHHHHHHHH----HHcCCCeeEEEcCCCCCC----Ch--hHHHhhCCCCCcCeE--EcCCCCe
Q 019711 139 KPIEIYEYESCPFCRKVREIV----AVLDLDVLYYPCPRNGPN----FR--PKVLQMGGKKQFPYM--VDPNTGV 201 (337)
Q Consensus 139 ~~l~LY~~~~cP~c~kVr~~L----~elgl~ye~~~v~~~~~~----~~--~e~~~~np~~kVP~L--vd~~~g~ 201 (337)
-.+.++.-..||+|.+---.| +..|+++..+.+|..+.. .+ ....+..+...+|+| ++++++.
T Consensus 152 ~gL~fFy~~~C~~C~~~apil~~fa~~ygi~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~Lv~~~t~~ 226 (256)
T TIGR02739 152 YGLFFFYRGKSPISQKMAPVIQAFAKEYGISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYLVNPKSQK 226 (256)
T ss_pred eeEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEEEECCCCc
Confidence 346666667899999865444 556888888877633211 11 112333455679987 5665553
No 351
>cd03185 GST_C_Tau GST_C family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropi
Probab=32.76 E-value=5.3 Score=32.20 Aligned_cols=48 Identities=15% Similarity=0.138 Sum_probs=32.1
Q ss_pred hhcCCCcchhhHhHHhhccCceEEEEc------------C-CCCCChHHHHHHcCCCCccEEE
Q 019711 264 AYEGSPFCKVVREVLVELELPHLQRSC------------A-RGSPKRQILIEKAKHFQVPYLE 313 (337)
Q Consensus 264 ~l~~sPf~~gvr~tLADl~L~~~l~~v------------~-~g~pk~~e~~~~~p~~qVP~L~ 313 (337)
.+..+||+.|+++|++|+.+.+.+.++ . ..-++..+|+++.- +.|.+.
T Consensus 50 ~L~~~~~l~G~~~t~ADi~l~~~~~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~--~~p~~~ 110 (126)
T cd03185 50 ELGGKPFFGGDTIGYVDIALGSFLGWFRAYEEVGGVKLLDEEKTPLLAAWAERFL--ELEAVK 110 (126)
T ss_pred HhcCCCCCCCCCcchHHHHHHHHHHHHHHHHHHcCccccCcccCchHHHHHHHHH--hccHHH
Confidence 345579999999999999886533221 1 12378888988773 355553
No 352
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=32.62 E-value=50 Score=27.36 Aligned_cols=37 Identities=11% Similarity=0.162 Sum_probs=31.0
Q ss_pred chhhhhhcCCCcchhhHhHHhhccCceEEEEcCCCCC
Q 019711 259 PLEVWAYEGSPFCKVVREVLVELELPHLQRSCARGSP 295 (337)
Q Consensus 259 ~L~l~~l~~sPf~~gvr~tLADl~L~~~l~~v~~g~p 295 (337)
.+++|+...|.=|++.+--|.+.++.|+.+++....+
T Consensus 2 ~itiy~~p~C~t~rka~~~L~~~gi~~~~~~y~~~~~ 38 (117)
T COG1393 2 MITIYGNPNCSTCRKALAWLEEHGIEYTFIDYLKTPP 38 (117)
T ss_pred eEEEEeCCCChHHHHHHHHHHHcCCCcEEEEeecCCC
Confidence 4678888889889999999999999999988765543
No 353
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=32.44 E-value=1.1e+02 Score=26.22 Aligned_cols=22 Identities=14% Similarity=0.608 Sum_probs=14.9
Q ss_pred eEEeecCCCcCHHHHHHHHHHc
Q 019711 141 IEIYEYESCPFCRKVREIVAVL 162 (337)
Q Consensus 141 l~LY~~~~cP~c~kVr~~L~el 162 (337)
|..|...+||.|.+....|.++
T Consensus 29 ll~f~~t~Cp~c~~~~~~l~~l 50 (171)
T cd02969 29 VVMFICNHCPYVKAIEDRLNRL 50 (171)
T ss_pred EEEEECCCCccHHHHHHHHHHH
Confidence 4445567999998765555554
No 354
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.79 E-value=86 Score=26.49 Aligned_cols=69 Identities=17% Similarity=0.215 Sum_probs=36.2
Q ss_pred CCCcCHHHHH----HHHHHcCCCeeEEEcC-CCCCCCh---hHHHhhCCC-CCcCeEEc-CCCCeeEecchhHHHHHhh
Q 019711 147 ESCPFCRKVR----EIVAVLDLDVLYYPCP-RNGPNFR---PKVLQMGGK-KQFPYMVD-PNTGVSMYESDNIIKYLVG 215 (337)
Q Consensus 147 ~~cP~c~kVr----~~L~elgl~ye~~~v~-~~~~~~~---~e~~~~np~-~kVP~Lvd-~~~g~~l~ES~aIi~YL~~ 215 (337)
.|||.|+++. .+|++...++.++.|. -+.+.++ -+|.+-... .-||.|+. .+.+..+-+...-...|.+
T Consensus 43 SWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~n~FR~d~~~lt~vPTLlrw~~~~~rL~~~q~~~~~Lve 121 (128)
T KOG3425|consen 43 SWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYWKDPANPFRKDPGILTAVPTLLRWKRQPQRLDGLQCLNDHLVE 121 (128)
T ss_pred cCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcccCCCCccccCCCceeecceeeEEcCccccchHhHhhHHHHHH
Confidence 4899999865 4555555555555553 1111111 134433333 57898853 1234456665555555544
No 355
>cd03206 GST_C_7 GST_C family, unknown subfamily 7; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=31.52 E-value=5.8 Score=30.89 Aligned_cols=41 Identities=7% Similarity=0.101 Sum_probs=26.4
Q ss_pred hhcCCCcchhhHhHHhhccCceEEEEc-----C-CCCCChHHHHHHc
Q 019711 264 AYEGSPFCKVVREVLVELELPHLQRSC-----A-RGSPKRQILIEKA 304 (337)
Q Consensus 264 ~l~~sPf~~gvr~tLADl~L~~~l~~v-----~-~g~pk~~e~~~~~ 304 (337)
.+..++|+.|+++|++|+.+...+.+. . ..-++..+|.++.
T Consensus 48 ~L~~~~~l~G~~~t~aDi~~~~~~~~~~~~~~~~~~~p~l~~~~~~~ 94 (100)
T cd03206 48 HLAGRDWLAGDRPTIADVAVYPYVALAPEGGVDLEDYPAIRRWLARI 94 (100)
T ss_pred HHccCCccCCCCCCHHHHHHHHHHHHHhccCCChhhCcHHHHHHHHH
Confidence 345679999999999998753222111 1 1236777777765
No 356
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=31.42 E-value=56 Score=26.63 Aligned_cols=46 Identities=7% Similarity=0.117 Sum_probs=34.7
Q ss_pred hhhhhhcCCCcchhhHhHHhhccCceEEEEcCCCCCChH---HHHHHcC
Q 019711 260 LEVWAYEGSPFCKVVREVLVELELPHLQRSCARGSPKRQ---ILIEKAK 305 (337)
Q Consensus 260 L~l~~l~~sPf~~gvr~tLADl~L~~~l~~v~~g~pk~~---e~~~~~p 305 (337)
+++|+...|.=|++..--|.+.++.|+.+++....+... +|++..+
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~di~~~p~t~~el~~~l~~~g 49 (114)
T TIGR00014 1 VTIYHNPRCSKSRNTLALLEDKGIEPEVVKYLKNPPTKSELEAIFAKLG 49 (114)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCeEEEeccCCCcCHHHHHHHHHHcC
Confidence 357788888889999999999999999999876654444 4444443
No 357
>cd03183 GST_C_Theta GST_C family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenatio
Probab=31.39 E-value=6 Score=32.06 Aligned_cols=39 Identities=15% Similarity=0.144 Sum_probs=26.7
Q ss_pred cCCCcchhhHhHHhhccCceEEEEc---C----CCCCChHHHHHHc
Q 019711 266 EGSPFCKVVREVLVELELPHLQRSC---A----RGSPKRQILIEKA 304 (337)
Q Consensus 266 ~~sPf~~gvr~tLADl~L~~~l~~v---~----~g~pk~~e~~~~~ 304 (337)
..++|+.|+++|++|+.+...+.+. . ..-|+..+|.++.
T Consensus 63 ~~~~~l~Gd~~t~ADi~l~~~~~~~~~~~~~~~~~~p~l~~w~~~~ 108 (126)
T cd03183 63 KDKPFLAGDEISIADLSAVCEIMQPEAAGYDVFEGRPKLAAWRKRV 108 (126)
T ss_pred cCCCcccCCCCCHHHHHHHHHHHHHHhcCCcccccCchHHHHHHHH
Confidence 3478999999999999865432111 1 2237888888766
No 358
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=31.14 E-value=82 Score=27.26 Aligned_cols=22 Identities=23% Similarity=0.285 Sum_probs=15.6
Q ss_pred eEEeecCCCcCHHHHHHHHHHc
Q 019711 141 IEIYEYESCPFCRKVREIVAVL 162 (337)
Q Consensus 141 l~LY~~~~cP~c~kVr~~L~el 162 (337)
+..|...+||.|++..-.++++
T Consensus 67 ll~F~a~wC~~C~~~~p~l~~l 88 (173)
T TIGR00385 67 LLNVWASWCPPCRAEHPYLNEL 88 (173)
T ss_pred EEEEECCcCHHHHHHHHHHHHH
Confidence 4445567999999876666554
No 359
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=30.67 E-value=84 Score=27.23 Aligned_cols=69 Identities=17% Similarity=0.311 Sum_probs=45.7
Q ss_pred CceEEeecCCCcCHHHHHHHHHHcCCCeeEEEcCCCCCCChhHHHhhCCCCCcCe-------EEcCCCCeeEec---chh
Q 019711 139 KPIEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPY-------MVDPNTGVSMYE---SDN 208 (337)
Q Consensus 139 ~~l~LY~~~~cP~c~kVr~~L~elgl~ye~~~v~~~~~~~~~e~~~~np~~kVP~-------Lvd~~~g~~l~E---S~a 208 (337)
..+..|..+.|-.|..--..|+.+|.++..+..+ +|.++-..--||. .+. +|..+=. -.|
T Consensus 26 ~~~~vyksPnCGCC~~w~~~mk~~Gf~Vk~~~~~--------d~~alK~~~gIp~e~~SCHT~VI--~Gy~vEGHVPa~a 95 (149)
T COG3019 26 TEMVVYKSPNCGCCDEWAQHMKANGFEVKVVETD--------DFLALKRRLGIPYEMQSCHTAVI--NGYYVEGHVPAEA 95 (149)
T ss_pred eeEEEEeCCCCccHHHHHHHHHhCCcEEEEeecC--------cHHHHHHhcCCChhhccccEEEE--cCEEEeccCCHHH
Confidence 4578899999999999999999999887776541 2333222233442 233 4533211 478
Q ss_pred HHHHHhhcc
Q 019711 209 IIKYLVGKY 217 (337)
Q Consensus 209 Ii~YL~~~y 217 (337)
|.+.|+++.
T Consensus 96 I~~ll~~~p 104 (149)
T COG3019 96 IARLLAEKP 104 (149)
T ss_pred HHHHHhCCC
Confidence 999999887
No 360
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=30.53 E-value=1.1e+02 Score=24.46 Aligned_cols=22 Identities=18% Similarity=0.280 Sum_probs=15.9
Q ss_pred eEEeecCCCcCHHHHHHHHHHc
Q 019711 141 IEIYEYESCPFCRKVREIVAVL 162 (337)
Q Consensus 141 l~LY~~~~cP~c~kVr~~L~el 162 (337)
+..|...+||.|++..-.|+++
T Consensus 29 vv~F~a~~C~~C~~~~~~l~~l 50 (127)
T cd03010 29 LLNVWASWCAPCREEHPVLMAL 50 (127)
T ss_pred EEEEEcCcCHHHHHHHHHHHHH
Confidence 4445567999999877776665
No 361
>cd03177 GST_C_Delta_Epsilon GST_C family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites th
Probab=30.51 E-value=5.6 Score=31.94 Aligned_cols=48 Identities=21% Similarity=0.271 Sum_probs=32.0
Q ss_pred hhcCCCcchhhHhHHhhccCceEEEEcC-------CCCCChHHHHHHcCCCCccEEE
Q 019711 264 AYEGSPFCKVVREVLVELELPHLQRSCA-------RGSPKRQILIEKAKHFQVPYLE 313 (337)
Q Consensus 264 ~l~~sPf~~gvr~tLADl~L~~~l~~v~-------~g~pk~~e~~~~~p~~qVP~L~ 313 (337)
.+..++|+.|+++|++|+.+...+.++. ...++..+|+++.- +.|.+.
T Consensus 53 ~L~~~~~l~G~~~s~aDi~l~~~~~~~~~~~~~~~~~~p~l~~w~~~~~--~~p~~~ 107 (118)
T cd03177 53 FLEGSDYVAGDQLTIADLSLVATVSTLEALLPLDLSKYPNVRAWLERLK--ALPPYE 107 (118)
T ss_pred HHccCCeeCCCCcCHHHHHHHHHHHHHHHhcCCChhhCchHHHHHHHHH--cccchH
Confidence 3456799999999999998764432221 11378888888773 345543
No 362
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=30.42 E-value=1.7e+02 Score=26.15 Aligned_cols=58 Identities=14% Similarity=0.196 Sum_probs=35.7
Q ss_pred EEeecCCCcCHHHHHHHHHHcCC---CeeEEEcCCCCCCChhHHHhhCCCCCcCeEEcCCCCeeEec
Q 019711 142 EIYEYESCPFCRKVREIVAVLDL---DVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYE 205 (337)
Q Consensus 142 ~LY~~~~cP~c~kVr~~L~elgl---~ye~~~v~~~~~~~~~e~~~~np~~kVP~Lvd~~~g~~l~E 205 (337)
..|+.++|+.|+.+.-.|+++-- .+.++.|+. + ......+-..+|+|+.=.+|..+..
T Consensus 107 V~Fya~wc~~C~~m~~~l~~LA~k~~~vkFvkI~a--d----~~~~~~~i~~lPTlliyk~G~~v~~ 167 (192)
T cd02988 107 VHLYKDGIPLCRLLNQHLSELARKFPDTKFVKIIS--T----QCIPNYPDKNLPTILVYRNGDIVKQ 167 (192)
T ss_pred EEEECCCCchHHHHHHHHHHHHHHCCCCEEEEEEh--H----HhHhhCCCCCCCEEEEEECCEEEEE
Confidence 33556899999998887777632 233444421 1 1245678889999853336654443
No 363
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=29.82 E-value=64 Score=24.70 Aligned_cols=53 Identities=13% Similarity=0.182 Sum_probs=34.4
Q ss_pred ceEEeecCCCcCHHHHHHHHHHcCC----CeeEEEcCCCCCCChhHHHhhCCCC--CcCeEE
Q 019711 140 PIEIYEYESCPFCRKVREIVAVLDL----DVLYYPCPRNGPNFRPKVLQMGGKK--QFPYMV 195 (337)
Q Consensus 140 ~l~LY~~~~cP~c~kVr~~L~elgl----~ye~~~v~~~~~~~~~e~~~~np~~--kVP~Lv 195 (337)
.+.+|..++|+.|...+..++++.- .+....|+. ++ .+++.+..+.. .+|+++
T Consensus 15 ~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~--~~-~~~~~~~~~i~~~~~P~~~ 73 (103)
T cd02982 15 LLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDA--DD-FGRHLEYFGLKEEDLPVIA 73 (103)
T ss_pred EEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEch--Hh-hHHHHHHcCCChhhCCEEE
Confidence 4566777789999999998877532 234444431 11 23466666766 999984
No 364
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=29.19 E-value=1e+02 Score=25.30 Aligned_cols=58 Identities=10% Similarity=0.069 Sum_probs=31.6
Q ss_pred ceEEeecC--CCcCHHHHHHHHHHcC---CCeeEEEcCCCCCCChhHHHhhCCCCCcCeEEcC
Q 019711 140 PIEIYEYE--SCPFCRKVREIVAVLD---LDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDP 197 (337)
Q Consensus 140 ~l~LY~~~--~cP~c~kVr~~L~elg---l~ye~~~v~~~~~~~~~e~~~~np~~kVP~Lvd~ 197 (337)
.+.|+.+. +||.|++-...|.++- -.+..+-|..+......+|.+..+...+|++.|.
T Consensus 28 ~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~l~D~ 90 (143)
T cd03014 28 VKVISVFPSIDTPVCATQTKRFNKEAAKLDNTVVLTISADLPFAQKRWCGAEGVDNVTTLSDF 90 (143)
T ss_pred eEEEEEEcCCCCCcCHHHHHHHHHHHHhcCCCEEEEEECCCHHHHHHHHHhcCCCCceEeecC
Confidence 34455444 4899998776665431 1344444432222223456666655578887763
No 365
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=29.10 E-value=58 Score=28.11 Aligned_cols=31 Identities=26% Similarity=0.311 Sum_probs=22.9
Q ss_pred eEEeecCCCcCHHHHHHHHH----HcCCCeeEEEc
Q 019711 141 IEIYEYESCPFCRKVREIVA----VLDLDVLYYPC 171 (337)
Q Consensus 141 l~LY~~~~cP~c~kVr~~L~----elgl~ye~~~v 171 (337)
|++|....||+|.-....|+ +.+++++++++
T Consensus 1 i~~~~D~~cP~cy~~~~~l~~~~~~~~~~i~~~p~ 35 (192)
T cd03022 1 IDFYFDFSSPYSYLAHERLPALAARHGATVRYRPI 35 (192)
T ss_pred CeEEEeCCChHHHHHHHHHHHHHHHhCCeeEEeee
Confidence 45788789999987654444 55788888877
No 366
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=28.52 E-value=1.4e+02 Score=31.13 Aligned_cols=77 Identities=14% Similarity=0.163 Sum_probs=49.7
Q ss_pred eEEeecCCCcCHHHHH-------HHHHHcCCCeeEEEcCCCCCCChhHHHhhCCCCCcCeEE-cCCCCe-----eEecch
Q 019711 141 IEIYEYESCPFCRKVR-------EIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMV-DPNTGV-----SMYESD 207 (337)
Q Consensus 141 l~LY~~~~cP~c~kVr-------~~L~elgl~ye~~~v~~~~~~~~~e~~~~np~~kVP~Lv-d~~~g~-----~l~ES~ 207 (337)
|..|+-+||..|.+.. -.|.+.|=++....||...+ .++-....-..+|.|. -.||.. -..+..
T Consensus 46 lVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~---~~~~~~y~v~gyPTlkiFrnG~~~~~Y~G~r~ad 122 (493)
T KOG0190|consen 46 LVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEE---SDLASKYEVRGYPTLKIFRNGRSAQDYNGPREAD 122 (493)
T ss_pred EEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchh---hhhHhhhcCCCCCeEEEEecCCcceeccCcccHH
Confidence 4456678999998642 23344444566666542211 4677778888899983 233331 256789
Q ss_pred hHHHHHhhccCCC
Q 019711 208 NIIKYLVGKYGDG 220 (337)
Q Consensus 208 aIi~YL~~~y~~~ 220 (337)
.|+.||-++.|..
T Consensus 123 gIv~wl~kq~gPa 135 (493)
T KOG0190|consen 123 GIVKWLKKQSGPA 135 (493)
T ss_pred HHHHHHHhccCCC
Confidence 9999999999864
No 367
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=28.16 E-value=1.1e+02 Score=26.80 Aligned_cols=64 Identities=14% Similarity=0.184 Sum_probs=43.0
Q ss_pred CCCceEEeecCCCcCHHHHHHHHHHcCCC----eeEEEcCCCCCCChhHHHhhCCCCCcCeEEcCCCCeeE
Q 019711 137 PEKPIEIYEYESCPFCRKVREIVAVLDLD----VLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSM 203 (337)
Q Consensus 137 ~~~~l~LY~~~~cP~c~kVr~~L~elgl~----ye~~~v~~~~~~~~~e~~~~np~~kVP~Lvd~~~g~~l 203 (337)
...-|.-|+.+||..|+-..-.|+++.=+ +..+.|+.. ...++...+.-.-||+++.=.+|..+
T Consensus 61 ~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD---~~~ela~~Y~I~avPtvlvfknGe~~ 128 (150)
T KOG0910|consen 61 DVPVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTD---EHPELAEDYEISAVPTVLVFKNGEKV 128 (150)
T ss_pred CCCEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEccc---cccchHhhcceeeeeEEEEEECCEEe
Confidence 34446668889999999999988887433 444444321 22467788899999987422266544
No 368
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=28.12 E-value=85 Score=25.83 Aligned_cols=55 Identities=9% Similarity=0.139 Sum_probs=34.4
Q ss_pred hhhhhhcCCCcchhhHhHHhhcc----CceEEEEcCCCC-------CChHHHHHHcC----CCCccEEEc
Q 019711 260 LEVWAYEGSPFCKVVREVLVELE----LPHLQRSCARGS-------PKRQILIEKAK----HFQVPYLED 314 (337)
Q Consensus 260 L~l~~l~~sPf~~gvr~tLADl~----L~~~l~~v~~g~-------pk~~e~~~~~p----~~qVP~L~d 314 (337)
+..|+...||||+.....|.++. +.+..++++... .+..++.+... -..+|+++-
T Consensus 27 iv~f~~~~Cp~C~~~~P~l~~~~~~~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~~i~~~PT~v~ 96 (122)
T TIGR01295 27 TFFIGRKTCPYCRKFSGTLSGVVAQTKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIPTSFMGTPTFVH 96 (122)
T ss_pred EEEEECCCChhHHHHhHHHHHHHHhcCCcEEEEECCCccCcCcccHHHHHHHHHHcCCcccCCCCCEEEE
Confidence 33447788999998776666554 556666666432 13456666654 334999864
No 369
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=27.48 E-value=1.3e+02 Score=25.04 Aligned_cols=53 Identities=13% Similarity=0.175 Sum_probs=27.6
Q ss_pred eEEeec--CCCcCHHHHHHHH-------HHcCCCeeEEEcCCCCCCChhHHHhhCCCCCcCeEEc
Q 019711 141 IEIYEY--ESCPFCRKVREIV-------AVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVD 196 (337)
Q Consensus 141 l~LY~~--~~cP~c~kVr~~L-------~elgl~ye~~~v~~~~~~~~~e~~~~np~~kVP~Lvd 196 (337)
+.|+-+ .+||.|+.-...| ...|+ +.+-|.......-.+|.+.++. .+|+|.|
T Consensus 33 ~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v--~vi~Is~d~~~~~~~~~~~~~~-~~~~l~D 94 (154)
T PRK09437 33 VLVYFYPKAMTPGCTVQACGLRDNMDELKKAGV--VVLGISTDKPEKLSRFAEKELL-NFTLLSD 94 (154)
T ss_pred EEEEEECCCCCCchHHHHHHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHhCC-CCeEEEC
Confidence 444443 3799997533322 33344 4555532222333456666643 6888776
No 370
>cd03202 GST_C_etherase_LigE GST_C family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=27.02 E-value=7 Score=32.18 Aligned_cols=41 Identities=10% Similarity=0.005 Sum_probs=28.1
Q ss_pred hhcCCCcchhhHhHHhhccCceEEEEcC--------CCCCChHHHHHHc
Q 019711 264 AYEGSPFCKVVREVLVELELPHLQRSCA--------RGSPKRQILIEKA 304 (337)
Q Consensus 264 ~l~~sPf~~gvr~tLADl~L~~~l~~v~--------~g~pk~~e~~~~~ 304 (337)
.+..++|+.|+++++||+.+...+.++. ...++..+|+++.
T Consensus 73 ~L~~~~fl~Gd~~t~AD~~l~~~l~~~~~~~~~~~~~~~p~l~~W~~r~ 121 (124)
T cd03202 73 TLKGQPFLGGAAPNYADYIVFGGFQWARIVSPFPLLEEDDPVYDWFERC 121 (124)
T ss_pred HHcCCCccCCCCCchhHHHHHHHHHHHHHcCcccccccCChHHHHHHHH
Confidence 4556899999999999998854432221 1236777777764
No 371
>PHA02125 thioredoxin-like protein
Probab=26.90 E-value=75 Score=23.44 Aligned_cols=50 Identities=20% Similarity=0.220 Sum_probs=35.9
Q ss_pred hhhhhcCCCcchhhHhHHhhccCceEEEEcCCCCCChHHHHHHcCCCCccEEEc
Q 019711 261 EVWAYEGSPFCKVVREVLVELELPHLQRSCARGSPKRQILIEKAKHFQVPYLED 314 (337)
Q Consensus 261 ~l~~l~~sPf~~gvr~tLADl~L~~~l~~v~~g~pk~~e~~~~~p~~qVP~L~d 314 (337)
.+|+-.+|+.|......|+++. +....++.+. .+++.+..+-..+|++++
T Consensus 3 v~f~a~wC~~Ck~~~~~l~~~~--~~~~~vd~~~--~~~l~~~~~v~~~PT~~~ 52 (75)
T PHA02125 3 YLFGAEWCANCKMVKPMLANVE--YTYVDVDTDE--GVELTAKHHIRSLPTLVN 52 (75)
T ss_pred EEEECCCCHhHHHHHHHHHHHh--heEEeeeCCC--CHHHHHHcCCceeCeEEC
Confidence 4556678999998888887654 4555555432 457778888778999985
No 372
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=26.25 E-value=3.2e+02 Score=22.61 Aligned_cols=77 Identities=14% Similarity=0.137 Sum_probs=42.6
Q ss_pred ceEEeec--CCCc---CHHHHHHHHHHc--CCCeeEEEcCCCCCCChhHHHhhCCCC--CcCeEE-cCCCC--e-eEecc
Q 019711 140 PIEIYEY--ESCP---FCRKVREIVAVL--DLDVLYYPCPRNGPNFRPKVLQMGGKK--QFPYMV-DPNTG--V-SMYES 206 (337)
Q Consensus 140 ~l~LY~~--~~cP---~c~kVr~~L~el--gl~ye~~~v~~~~~~~~~e~~~~np~~--kVP~Lv-d~~~g--~-~l~ES 206 (337)
.|..|.- ++|. .|.+.--..... .|-+-.++|+..++....++-+.++-. .+|+|. -.+++ . ..|+.
T Consensus 21 vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~~v~lakVd~~d~~~~~~~~L~~~y~I~~~gyPTl~lF~~g~~~~~~~Y~G 100 (116)
T cd03007 21 SLVKFDTAYPYGEKHEAFTRLAESSASATDDLLVAEVGIKDYGEKLNMELGERYKLDKESYPVIYLFHGGDFENPVPYSG 100 (116)
T ss_pred EEEEEeCCCCCCCChHHHHHHHHHHHhhcCceEEEEEecccccchhhHHHHHHhCCCcCCCCEEEEEeCCCcCCCccCCC
Confidence 3555555 7777 666655444332 244445555433443335677888877 899883 22232 1 23443
Q ss_pred -----hhHHHHHhhc
Q 019711 207 -----DNIIKYLVGK 216 (337)
Q Consensus 207 -----~aIi~YL~~~ 216 (337)
.+|+.|+.++
T Consensus 101 ~~r~~~~lv~~v~~~ 115 (116)
T cd03007 101 ADVTVDALQRFLKGN 115 (116)
T ss_pred CcccHHHHHHHHHhc
Confidence 4677777654
No 373
>smart00594 UAS UAS domain.
Probab=26.21 E-value=3.5e+02 Score=21.86 Aligned_cols=62 Identities=19% Similarity=0.355 Sum_probs=36.0
Q ss_pred CceEEeecCCCcCHHHH-HHHHH------HcCCCeeEEEcCCCCCCChhHHHhhCCCCCcCeE--EcCCCCe
Q 019711 139 KPIEIYEYESCPFCRKV-REIVA------VLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYM--VDPNTGV 201 (337)
Q Consensus 139 ~~l~LY~~~~cP~c~kV-r~~L~------elgl~ye~~~v~~~~~~~~~e~~~~np~~kVP~L--vd~~~g~ 201 (337)
.-+...+.++|+.|.+. |.++. .++=.|-...++.... ...++.+.....++|.+ +++++|.
T Consensus 29 ~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~-eg~~l~~~~~~~~~P~~~~l~~~~g~ 99 (122)
T smart00594 29 LLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTS-EGQRVSQFYKLDSFPYVAIVDPRTGQ 99 (122)
T ss_pred CEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCCh-hHHHHHHhcCcCCCCEEEEEecCCCc
Confidence 33455566899999874 32222 2232465555542222 22457777777899988 5666654
No 374
>cd03178 GST_C_Ure2p_like GST_C family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The N-terminal thioredoxin-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of GSH with a wide range of en
Probab=25.89 E-value=6.7 Score=30.92 Aligned_cols=40 Identities=8% Similarity=0.123 Sum_probs=26.3
Q ss_pred hcCCCcchhhHhHHhhccCceEEEEc-------CCCCCChHHHHHHc
Q 019711 265 YEGSPFCKVVREVLVELELPHLQRSC-------ARGSPKRQILIEKA 304 (337)
Q Consensus 265 l~~sPf~~gvr~tLADl~L~~~l~~v-------~~g~pk~~e~~~~~ 304 (337)
+.+++|..|++++++|+.+...+.+. ...-|+..+|.++.
T Consensus 56 L~~~~~l~G~~~t~aDi~l~~~~~~~~~~~~~~~~~~p~l~~w~~~~ 102 (113)
T cd03178 56 LAGRDYLAGDEYSIADIAIFPWVRRLEWIGIDDLDDFPNVKRWLDRI 102 (113)
T ss_pred HccCCcccCCCCCeeeeeHHHHHHHHHhccccchhhchHHHHHHHHH
Confidence 44679999999999999874332221 11236677777765
No 375
>cd03182 GST_C_GTT2_like GST_C family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensiti
Probab=25.81 E-value=9.1 Score=30.36 Aligned_cols=41 Identities=10% Similarity=0.043 Sum_probs=27.1
Q ss_pred hhcCCCcchhhHhHHhhccCceEEEEcCC-------CCCChHHHHHHc
Q 019711 264 AYEGSPFCKVVREVLVELELPHLQRSCAR-------GSPKRQILIEKA 304 (337)
Q Consensus 264 ~l~~sPf~~gvr~tLADl~L~~~l~~v~~-------g~pk~~e~~~~~ 304 (337)
.+..++|+.|++++++|+.+.+.+.++.. .-|+...|+++.
T Consensus 64 ~L~~~~~l~gd~~t~aDi~l~~~~~~~~~~~~~~~~~~p~l~~w~~~~ 111 (117)
T cd03182 64 RLAGSPYVAGDRFTIADITAFVGLDFAKVVKLRVPEELTHLRAWYDRM 111 (117)
T ss_pred HhcCCCcccCCCCCHHHHHHHHHhHHHHhcCCCCccccHHHHHHHHHH
Confidence 34567899999999999987655433211 124566666654
No 376
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=25.00 E-value=68 Score=26.62 Aligned_cols=49 Identities=14% Similarity=0.194 Sum_probs=33.5
Q ss_pred eecCCCcCHHHHHHHHHHcCCC----eeEEEcCCCCCCChhHHHhhCCCCCcCeEE
Q 019711 144 YEYESCPFCRKVREIVAVLDLD----VLYYPCPRNGPNFRPKVLQMGGKKQFPYMV 195 (337)
Q Consensus 144 Y~~~~cP~c~kVr~~L~elgl~----ye~~~v~~~~~~~~~e~~~~np~~kVP~Lv 195 (337)
|...||+.|+..-..|+++--+ +..+.|+-. .-+++.+...-.-.|+.+
T Consensus 21 F~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVD---ev~dva~~y~I~amPtfv 73 (114)
T cd02986 21 FGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVD---KVPVYTQYFDISYIPSTI 73 (114)
T ss_pred EeCCCChhHHHHHHHHHHHHHHccCceEEEEEecc---ccHHHHHhcCceeCcEEE
Confidence 6678999999998888887432 333334211 235788888887789864
No 377
>cd03210 GST_C_Pi GST_C family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an incre
Probab=24.59 E-value=7 Score=32.03 Aligned_cols=37 Identities=14% Similarity=0.103 Sum_probs=25.5
Q ss_pred CCcchhhHhHHhhccCceEEEEcC-------CCCCChHHHHHHc
Q 019711 268 SPFCKVVREVLVELELPHLQRSCA-------RGSPKRQILIEKA 304 (337)
Q Consensus 268 sPf~~gvr~tLADl~L~~~l~~v~-------~g~pk~~e~~~~~ 304 (337)
++|+.|+++|++|+.+...+.+.. ..-|+..+|+++.
T Consensus 57 ~~~l~G~~~T~ADi~l~~~~~~~~~~~~~~~~~~P~l~~~~~rv 100 (126)
T cd03210 57 KGFIVGDKISFADYNLFDLLDIHLVLAPGCLDAFPLLKAFVERL 100 (126)
T ss_pred CCeeeCCCccHHHHHHHHHHHHHHHhChHhhhcChHHHHHHHHH
Confidence 589999999999998765443322 1126777777765
No 378
>cd03203 GST_C_Lambda GST_C family, Class Lambda subfamily; composed of plant-specific class Lambda GSTs. GSTs are cytosolic, usually dimeric, proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Lambda subfamily was recently discovered, together with dehydroascorbate reductases (DHARs), as two outlying groups of the GST superfamily in Arabidopsis thaliana, which contain conserved active site cysteines. Characterization of recombinant A. thaliana proteins show that Lambda class GSTs are monomeric, similar
Probab=24.59 E-value=13 Score=30.29 Aligned_cols=45 Identities=18% Similarity=0.264 Sum_probs=30.5
Q ss_pred CCCcchhhHhHHhhccCceEE----------EEcC--CCCCChHHHHHHcCCCCccEEEc
Q 019711 267 GSPFCKVVREVLVELELPHLQ----------RSCA--RGSPKRQILIEKAKHFQVPYLED 314 (337)
Q Consensus 267 ~sPf~~gvr~tLADl~L~~~l----------~~v~--~g~pk~~e~~~~~p~~qVP~L~d 314 (337)
+++|+.| +++++|+.+...+ ..++ ..-|+..+|+++.- +.|.+..
T Consensus 51 ~~~fl~G-~~tlADi~l~~~~~~~~~~~~~~~~~~~~~~~P~l~~W~~~~~--~rp~~~~ 107 (120)
T cd03203 51 DGPFFLG-QFSLVDIAYVPFIERFQIFLSELFNYDITEGRPNLAAWIEEMN--KIEAYTQ 107 (120)
T ss_pred CCCCcCC-CccHHHHHHHHHHHHHHHHHHHhcCccccccCcHHHHHHHHHh--cchHHHh
Confidence 5799999 9999999864322 1122 23488999999883 3466543
No 379
>cd03209 GST_C_Mu GST_C family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the m
Probab=24.43 E-value=8 Score=31.34 Aligned_cols=41 Identities=12% Similarity=0.087 Sum_probs=26.6
Q ss_pred hhcCCCcchhhHhHHhhccCceEEEEcCC-------CCCChHHHHHHc
Q 019711 264 AYEGSPFCKVVREVLVELELPHLQRSCAR-------GSPKRQILIEKA 304 (337)
Q Consensus 264 ~l~~sPf~~gvr~tLADl~L~~~l~~v~~-------g~pk~~e~~~~~ 304 (337)
.+..++|+.|+++|++|+.+...+.++.. .-|+...|.++.
T Consensus 50 ~L~~~~~l~G~~~T~aDi~l~~~~~~~~~~~~~~~~~~P~l~~~~~rv 97 (121)
T cd03209 50 FLGDRPWFAGDKITYVDFLLYEALDQHRIFEPDCLDAFPNLKDFLERF 97 (121)
T ss_pred HhCCCCCcCCCCccHHHHHHHHHHHHHHHhCccccccChHHHHHHHHH
Confidence 34567899999999999987544332221 125666676655
No 380
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=24.15 E-value=75 Score=27.47 Aligned_cols=32 Identities=9% Similarity=0.214 Sum_probs=22.6
Q ss_pred ceEEeecCCCcCHHHHHHHHH----Hc--CCCeeEEEc
Q 019711 140 PIEIYEYESCPFCRKVREIVA----VL--DLDVLYYPC 171 (337)
Q Consensus 140 ~l~LY~~~~cP~c~kVr~~L~----el--gl~ye~~~v 171 (337)
.|.+|....||+|......|+ +. +++++++..
T Consensus 2 ~i~~~~D~~cp~c~~~~~~l~~l~~~~~~~~~v~~~~~ 39 (193)
T cd03025 2 ELYYFIDPLCGWCYGFEPLLEKLKEEYGGGIEVELHLG 39 (193)
T ss_pred eEEEEECCCCchhhCchHHHHHHHHHhCCCceEEEEec
Confidence 478899999999986665554 43 566666554
No 381
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=23.99 E-value=36 Score=31.67 Aligned_cols=61 Identities=18% Similarity=0.265 Sum_probs=35.0
Q ss_pred CCceEEeecCCCcCHHHHHHHHHHc----CCCeeEEEcCCCCCCChhHHHhhCCCCCcCeEEcCCCCeeEecchhHHHHH
Q 019711 138 EKPIEIYEYESCPFCRKVREIVAVL----DLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYL 213 (337)
Q Consensus 138 ~~~l~LY~~~~cP~c~kVr~~L~el----gl~ye~~~v~~~~~~~~~e~~~~np~~kVP~Lvd~~~g~~l~ES~aIi~YL 213 (337)
+..|.+|.-..||+|..-+.-|+.. +-.+. +.+ ...|....|.+.- . ..++..||
T Consensus 5 ~i~I~v~sD~vCPwC~ig~~rL~ka~~~~~~~~~-v~i------------~w~pf~l~p~~~~--~------g~~~~~~l 63 (225)
T COG2761 5 KIEIDVFSDVVCPWCYIGKRRLEKALAEYPQEVR-VEI------------RWRPFELDPDLPP--E------GLDRKEYL 63 (225)
T ss_pred eEEEEEEeCCcCchhhcCHHHHHHHHHhcCccee-EEE------------EecccccCCCCCc--c------cccHHHHH
Confidence 4457788888999997665555544 42221 222 1123333343332 1 35678899
Q ss_pred hhccCC
Q 019711 214 VGKYGD 219 (337)
Q Consensus 214 ~~~y~~ 219 (337)
+++||.
T Consensus 64 ~~k~g~ 69 (225)
T COG2761 64 AQKYGI 69 (225)
T ss_pred HHHhCc
Confidence 999985
No 382
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=23.89 E-value=2.4e+02 Score=22.75 Aligned_cols=70 Identities=17% Similarity=0.205 Sum_probs=35.3
Q ss_pred ceEEeecCCCcC-HHHHHHHHHHc-------C-CCeeEEEc--CCC--CCCChhHHHhhCCCCCcCeEEcCCCCeeEecc
Q 019711 140 PIEIYEYESCPF-CRKVREIVAVL-------D-LDVLYYPC--PRN--GPNFRPKVLQMGGKKQFPYMVDPNTGVSMYES 206 (337)
Q Consensus 140 ~l~LY~~~~cP~-c~kVr~~L~el-------g-l~ye~~~v--~~~--~~~~~~e~~~~np~~kVP~Lvd~~~g~~l~ES 206 (337)
.+..|...+|++ |.+-...|..+ + -.++.+-| +.. ....-.+|.+.++ ..+|+|.+ .
T Consensus 25 ~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~~~d~~~~~~~~~~~~~-~~~~~l~~---------~ 94 (142)
T cd02968 25 VLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDPERDTPEVLKAYAKAFG-PGWIGLTG---------T 94 (142)
T ss_pred EEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECCCCCCHHHHHHHHHHhC-CCcEEEEC---------C
Confidence 344456679998 98655555442 2 12444444 321 1122234555554 35666665 2
Q ss_pred hhHHHHHhhccCC
Q 019711 207 DNIIKYLVGKYGD 219 (337)
Q Consensus 207 ~aIi~YL~~~y~~ 219 (337)
.+...-+.+.||.
T Consensus 95 ~~~~~~~~~~~g~ 107 (142)
T cd02968 95 PEEIEALAKAFGV 107 (142)
T ss_pred HHHHHHHHHHhcE
Confidence 2344456666663
No 383
>PF13410 GST_C_2: Glutathione S-transferase, C-terminal domain; PDB: 4DEJ_H 3IC8_A 2JL4_A 2V6K_B 3CBU_B 1JLW_B 3F6D_B 3G7I_A 3F63_A 3G7J_B ....
Probab=23.84 E-value=23 Score=25.29 Aligned_cols=26 Identities=19% Similarity=0.231 Sum_probs=18.3
Q ss_pred hhcCCCcchhhHhHHhhccCceEEEE
Q 019711 264 AYEGSPFCKVVREVLVELELPHLQRS 289 (337)
Q Consensus 264 ~l~~sPf~~gvr~tLADl~L~~~l~~ 289 (337)
.+..++|+.|++++++|+.+...+.+
T Consensus 21 ~L~~~~fl~G~~~s~aD~~l~~~l~~ 46 (69)
T PF13410_consen 21 HLADGPFLFGDRPSLADIALAPFLWR 46 (69)
T ss_dssp HHTTSSBTTBSS--HHHHHHHHHHHH
T ss_pred HHhhCCCCCCCCCCHHHHHHHHHHHH
Confidence 44567899999999999988655433
No 384
>cd03196 GST_C_5 GST_C family, unknown subfamily 5; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=23.83 E-value=8 Score=31.34 Aligned_cols=41 Identities=7% Similarity=0.041 Sum_probs=27.2
Q ss_pred hhcCCCcchhhHhHHhhccCceEEE--------EcC-CCCCChHHHHHHc
Q 019711 264 AYEGSPFCKVVREVLVELELPHLQR--------SCA-RGSPKRQILIEKA 304 (337)
Q Consensus 264 ~l~~sPf~~gvr~tLADl~L~~~l~--------~v~-~g~pk~~e~~~~~ 304 (337)
.+..++|+.|++++++|+.+...+. +.. ..-|+..+|+++.
T Consensus 56 ~L~~~~yl~Gd~~tlADi~l~~~l~~~~~~~~~~~~~~~~P~L~~w~~r~ 105 (115)
T cd03196 56 RLQQHSYLLGDKPSLADWAIFPFVRQFAHVDPKWFDQSPYPRLRRWLNGF 105 (115)
T ss_pred HHccCCccCCCCccHHHHHHHHHHHHHHHhhhcccCcccCHHHHHHHHHH
Confidence 4456799999999999998753221 111 2236777777766
No 385
>cd03187 GST_C_Phi GST_C family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes a
Probab=23.48 E-value=24 Score=27.81 Aligned_cols=41 Identities=12% Similarity=0.020 Sum_probs=27.3
Q ss_pred hhcCCCcchhhHhHHhhccCceEEEEcC--------CCCCChHHHHHHc
Q 019711 264 AYEGSPFCKVVREVLVELELPHLQRSCA--------RGSPKRQILIEKA 304 (337)
Q Consensus 264 ~l~~sPf~~gvr~tLADl~L~~~l~~v~--------~g~pk~~e~~~~~ 304 (337)
.+..++|+.|+++|++|+.+...+.++. ..-++..+|+++.
T Consensus 60 ~L~~~~~l~G~~~t~aDi~l~~~~~~~~~~~~~~~~~~~p~l~~~~~~~ 108 (118)
T cd03187 60 RLSKSKYLAGDSFTLADLSHLPYLQYLMATPFAKLFDSRPHVKAWWEDI 108 (118)
T ss_pred HcccCcccCCCCccHHHHHHHHHHHHHHHccchhhhhcCchHHHHHHHH
Confidence 4456899999999999999753322211 1236677777765
No 386
>cd03208 GST_C_Alpha GST_C family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Alpha subfamily is composed of vertebrate GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GS
Probab=23.38 E-value=7.6 Score=32.67 Aligned_cols=38 Identities=13% Similarity=0.059 Sum_probs=27.2
Q ss_pred CCCcchhhHhHHhhccCceEEEEcC-------CCCCChHHHHHHc
Q 019711 267 GSPFCKVVREVLVELELPHLQRSCA-------RGSPKRQILIEKA 304 (337)
Q Consensus 267 ~sPf~~gvr~tLADl~L~~~l~~v~-------~g~pk~~e~~~~~ 304 (337)
+++|++|+++|++|+.+...+.++. ..-|+..+|+++.
T Consensus 59 ~~~~l~G~~~T~ADi~l~~~l~~~~~~~~~~l~~~P~l~~~~~rv 103 (137)
T cd03208 59 GQDFLVGNKLSRADIHLLEAILMVEELDPSLLSDFPLLQAFKTRI 103 (137)
T ss_pred CCCeeeCCCCCHHHHHHHHHHHHHHHhchhhhccChHHHHHHHHH
Confidence 5789999999999998765443332 1127888888766
No 387
>cd03197 GST_C_mPGES2 GST_C family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH, or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature, and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated and a C-terminal soluble domain with a GST-like structure. The C-terminus contains two structural domains a N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The GST active site is located in a cleft between t
Probab=22.95 E-value=11 Score=32.92 Aligned_cols=39 Identities=18% Similarity=0.126 Sum_probs=27.8
Q ss_pred CCCcchhhHhHHhhccCceEEEEcC--------CCCCChHHHHHHcC
Q 019711 267 GSPFCKVVREVLVELELPHLQRSCA--------RGSPKRQILIEKAK 305 (337)
Q Consensus 267 ~sPf~~gvr~tLADl~L~~~l~~v~--------~g~pk~~e~~~~~p 305 (337)
.++|+.|++.+|||+.+...+..+. ...+++.+|++++.
T Consensus 98 ~~~FlaGd~ptIADisvyg~l~s~e~~~~~~Dl~~~p~I~~W~eRm~ 144 (149)
T cd03197 98 DRQFHGGSKPNLADLAVYGVLRSVEGHPAFKDMVEETKIGEWYERMD 144 (149)
T ss_pred CCCccCCCCCCHHHHHHHHHHHHHHHhccccchhhCcCHHHHHHHHH
Confidence 4689999999999998855432221 12378889988763
No 388
>cd03186 GST_C_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=22.43 E-value=21 Score=27.91 Aligned_cols=41 Identities=15% Similarity=0.200 Sum_probs=27.5
Q ss_pred hhcCCCcchhhHhHHhhccCceEEEEc---C----CCCCChHHHHHHc
Q 019711 264 AYEGSPFCKVVREVLVELELPHLQRSC---A----RGSPKRQILIEKA 304 (337)
Q Consensus 264 ~l~~sPf~~gvr~tLADl~L~~~l~~v---~----~g~pk~~e~~~~~ 304 (337)
.+..++|+.|++++++|+.+.+.+... . ...++..+|+++.
T Consensus 50 ~L~~~~~l~G~~~t~aDi~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~ 97 (107)
T cd03186 50 VFAHKPYFMSEEFSLVDCALAPLLWRLPALGIELPKQAKPLKDYMERV 97 (107)
T ss_pred HHcCCCcccCCCCcHHHHHHHHHHHHHHHcCCCCcccchHHHHHHHHH
Confidence 455689999999999999876543211 1 1235667777665
No 389
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=22.24 E-value=77 Score=29.94 Aligned_cols=28 Identities=18% Similarity=0.517 Sum_probs=20.7
Q ss_pred CCCCCceEEeecCCCcCHHHHHHHHHHc
Q 019711 135 PRPEKPIEIYEYESCPFCRKVREIVAVL 162 (337)
Q Consensus 135 ~~~~~~l~LY~~~~cP~c~kVr~~L~el 162 (337)
+.++..+..-+.++||+|..-||+|-..
T Consensus 56 ~~Gk~~v~~igw~gCP~~A~~sW~L~~A 83 (249)
T PF06053_consen 56 PNGKPEVIFIGWEGCPYCAAESWALYIA 83 (249)
T ss_pred CCCeeEEEEEecccCccchhhHHHHHHH
Confidence 4444455566789999999999987553
No 390
>cd05295 MDH_like Malate dehydrogenase-like. These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=22.18 E-value=2.2e+02 Score=29.37 Aligned_cols=70 Identities=14% Similarity=0.224 Sum_probs=0.0
Q ss_pred CCCcchhhHhHHhhccC---ceEEEEcCCCCCChHHHHH----HcC--CCCccEE----Ec-CCCCeeeecHHHHHHHHH
Q 019711 267 GSPFCKVVREVLVELEL---PHLQRSCARGSPKRQILIE----KAK--HFQVPYL----ED-PNTGVQMFESADIVEYLR 332 (337)
Q Consensus 267 ~sPf~~gvr~tLADl~L---~~~l~~v~~g~pk~~e~~~----~~p--~~qVP~L----~d-~~~g~~l~ES~~I~~YL~ 332 (337)
+|||-++..+...++.. .|.++-+-+.....++|++ .|+ +..-|.+ +| ...|..+...++-++|.+
T Consensus 3 ~cp~ya~~ellad~l~~~l~~f~~~ki~~~p~~w~~wl~~~c~~~~w~~~~spiiwrel~~rggkg~l~gg~~~f~e~~~ 82 (452)
T cd05295 3 DCPYYAKAELLADYLQKNLPDFRVHKIVKHPDEWEDWLQDLCKKNGWSHKRSPIIWRELLDRGGKGLLLGGCNEFLEYAE 82 (452)
T ss_pred CCchhHHHHHHHHHHHhhCCCceEEEccCChHHHHHHHHHHHHhcCCccCCCCeeHHHHHhcCCCceEecChHHHHHHHH
Q ss_pred HHhC
Q 019711 333 ATYA 336 (337)
Q Consensus 333 ~~y~ 336 (337)
.-|+
T Consensus 83 ~yyg 86 (452)
T cd05295 83 SYYG 86 (452)
T ss_pred HHhC
No 391
>cd03191 GST_C_Zeta GST_C family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates, but display modest GSH peroxidase activity. They are also implicated in the detoxification of th
Probab=22.13 E-value=8.5 Score=30.89 Aligned_cols=37 Identities=16% Similarity=0.137 Sum_probs=26.1
Q ss_pred CCcchhhHhHHhhccCceEEEEcC------CCCCChHHHHHHc
Q 019711 268 SPFCKVVREVLVELELPHLQRSCA------RGSPKRQILIEKA 304 (337)
Q Consensus 268 sPf~~gvr~tLADl~L~~~l~~v~------~g~pk~~e~~~~~ 304 (337)
++|++|+++|++|+.+.+.+.++. ...++...|+++.
T Consensus 65 ~~~l~G~~~t~ADi~~~~~~~~~~~~~~~~~~~p~l~~w~~~~ 107 (121)
T cd03191 65 GKFCFGDEPTLADICLVPQVYNARRFGVDLSPYPTIARINEAC 107 (121)
T ss_pred CCeecCCcCCHHHHHHHHHHHHHHHhCCCcccCcHHHHHHHHH
Confidence 479999999999998875433221 1226778887766
No 392
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=21.68 E-value=1.6e+02 Score=25.37 Aligned_cols=57 Identities=12% Similarity=0.114 Sum_probs=28.7
Q ss_pred eEEee--cCCCcCHHHHHHHHHHc-----CCCeeEEEcCCCCCCChhHHHhhCC------CCCcCeEEcC
Q 019711 141 IEIYE--YESCPFCRKVREIVAVL-----DLDVLYYPCPRNGPNFRPKVLQMGG------KKQFPYMVDP 197 (337)
Q Consensus 141 l~LY~--~~~cP~c~kVr~~L~el-----gl~ye~~~v~~~~~~~~~e~~~~np------~~kVP~Lvd~ 197 (337)
+.|+. ..+||.|..-...|.++ +..+..+-|..+......+|.+... ...+|++.|+
T Consensus 32 vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~ 101 (173)
T cd03015 32 VVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDSHFSHLAWRNTPRKEGGLGKINFPLLADP 101 (173)
T ss_pred EEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCCHHHHHHHHHhhhhhCCccCcceeEEECC
Confidence 44544 35899999865555443 2233444442211111224554432 2368888873
No 393
>PF00043 GST_C: Glutathione S-transferase, C-terminal domain; InterPro: IPR004046 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of cephalopods is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold. Each monomer is composed of a distinct N-terminal sub-domain, which adopts the thioredoxin fold, and a C-terminal all-helical sub-domain. This entry is the C-terminal domain.; PDB: 3UAP_A 3UAR_A 3QAV_A 3QAW_A 1Y6E_A 1U88_B 4AI6_B 1UA5_A 4AKH_A 3QMZ_S ....
Probab=21.08 E-value=23 Score=26.82 Aligned_cols=41 Identities=15% Similarity=0.190 Sum_probs=28.6
Q ss_pred hhcCCCcchhhHhHHhhccCceEEEEcC--------CCCCChHHHHHHc
Q 019711 264 AYEGSPFCKVVREVLVELELPHLQRSCA--------RGSPKRQILIEKA 304 (337)
Q Consensus 264 ~l~~sPf~~gvr~tLADl~L~~~l~~v~--------~g~pk~~e~~~~~ 304 (337)
.+.+++|+.|+++|+||+.+...+.++. ..-|+..+|.++.
T Consensus 43 ~l~~~~~l~G~~~t~ADi~~~~~~~~~~~~~~~~~~~~~P~l~~w~~~~ 91 (95)
T PF00043_consen 43 RLKGGPYLVGDKLTIADIALFPMLDWLERLGPDFLFEKFPKLKKWYERM 91 (95)
T ss_dssp HHHTSSSSSBSS-CHHHHHHHHHHHHHHHHTTTTTHTTSHHHHHHHHHH
T ss_pred HHcCCCeeeccCCchhHHHHHHHHHHHHHhCCCcccccCHHHHHHHHHH
Confidence 3447999999999999999877665542 1226677777654
No 394
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=21.04 E-value=1.2e+02 Score=27.02 Aligned_cols=32 Identities=25% Similarity=0.471 Sum_probs=24.5
Q ss_pred ceEEeecCCCcCHHHHHHH----HHHcCCCeeEEEc
Q 019711 140 PIEIYEYESCPFCRKVREI----VAVLDLDVLYYPC 171 (337)
Q Consensus 140 ~l~LY~~~~cP~c~kVr~~----L~elgl~ye~~~v 171 (337)
.|.+|.-..||+|.-...- +.+.+++++++++
T Consensus 2 ~Id~~~D~vcPwcylg~~~l~~~~~~~~v~i~~~P~ 37 (209)
T cd03021 2 KIELYYDVVSPYSYLAFEVLCRYQTAWNVDITYVPV 37 (209)
T ss_pred ceEEEEeCCChHHHHHHHHHHHHHHHhCCeEEEEee
Confidence 4778888899999865444 4556888888887
No 395
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=20.81 E-value=2.9e+02 Score=20.65 Aligned_cols=31 Identities=23% Similarity=0.259 Sum_probs=21.1
Q ss_pred EEeecCCCcCHHHHHHHHHHc----C--CCeeEEEcC
Q 019711 142 EIYEYESCPFCRKVREIVAVL----D--LDVLYYPCP 172 (337)
Q Consensus 142 ~LY~~~~cP~c~kVr~~L~el----g--l~ye~~~v~ 172 (337)
..|...+|+.|++....|.++ + -.++.+-|.
T Consensus 6 l~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs 42 (95)
T PF13905_consen 6 LYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVS 42 (95)
T ss_dssp EEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE
T ss_pred EEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEE
Confidence 345556999999988888765 3 566666663
No 396
>cd03194 GST_C_3 GST_C family, unknown subfamily 3; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=20.28 E-value=10 Score=30.66 Aligned_cols=38 Identities=16% Similarity=0.166 Sum_probs=25.8
Q ss_pred cCCCcchhhHhHHhhccCceEEEEcC---CC-CCChHHHHHHc
Q 019711 266 EGSPFCKVVREVLVELELPHLQRSCA---RG-SPKRQILIEKA 304 (337)
Q Consensus 266 ~~sPf~~gvr~tLADl~L~~~l~~v~---~g-~pk~~e~~~~~ 304 (337)
.+++|+.|+ +|++|+.+...+.++. .. .|+..+|+++.
T Consensus 61 ~~~~yl~Gd-~T~ADi~l~~~~~~~~~~~~~~~P~l~~~~~rv 102 (114)
T cd03194 61 QGGPFLFGD-FSIADAFFAPVVTRFRTYGLPLSPAAQAYVDAL 102 (114)
T ss_pred CCCCCCCCC-CcHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 367899999 9999998764433221 11 26777777765
No 397
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=20.25 E-value=53 Score=33.85 Aligned_cols=57 Identities=18% Similarity=0.042 Sum_probs=38.7
Q ss_pred chhhhhhcCCCcchhhHhHHhhccCceEEEEcC-CCCCChHHHHHHcCCCCccEEEcC
Q 019711 259 PLEVWAYEGSPFCKVVREVLVELELPHLQRSCA-RGSPKRQILIEKAKHFQVPYLEDP 315 (337)
Q Consensus 259 ~L~l~~l~~sPf~~gvr~tLADl~L~~~l~~v~-~g~pk~~e~~~~~p~~qVP~L~d~ 315 (337)
.+++|....||||-.+...+.++.+..--+++. .+...-+++.++..-..||.+..+
T Consensus 120 ~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~i~~~~id~~~~~~~~~~~~v~~VP~~~i~ 177 (515)
T TIGR03140 120 HFETYVSLTCQNCPDVVQALNQMALLNPNISHTMIDGALFQDEVEALGIQGVPAVFLN 177 (515)
T ss_pred EEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEEchhCHHHHHhcCCcccCEEEEC
Confidence 466777788999999877777766532111111 233456778888888899999763
No 398
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=20.16 E-value=2.7e+02 Score=27.09 Aligned_cols=78 Identities=12% Similarity=0.105 Sum_probs=50.9
Q ss_pred CceEEeecCCCcCHHHHHHHHHHcC----CCeeEEEcCCCCCCChhHHHhhCCCCCcCeEEcCCCCeeEec------chh
Q 019711 139 KPIEIYEYESCPFCRKVREIVAVLD----LDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYE------SDN 208 (337)
Q Consensus 139 ~~l~LY~~~~cP~c~kVr~~L~elg----l~ye~~~v~~~~~~~~~e~~~~np~~kVP~Lvd~~~g~~l~E------S~a 208 (337)
.-+.+|..++|+.|+...-.|+.+- =.+....|+ ....+.+....+-..||+.+-=.+|..+-+ -+.
T Consensus 45 PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN---~D~~p~vAaqfgiqsIPtV~af~dGqpVdgF~G~qPesq 121 (304)
T COG3118 45 PVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVN---CDAEPMVAAQFGVQSIPTVYAFKDGQPVDGFQGAQPESQ 121 (304)
T ss_pred CeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEec---CCcchhHHHHhCcCcCCeEEEeeCCcCccccCCCCcHHH
Confidence 3467778899999999988887762 234444442 123457889999999998742114543321 257
Q ss_pred HHHHHhhccCC
Q 019711 209 IIKYLVGKYGD 219 (337)
Q Consensus 209 Ii~YL~~~y~~ 219 (337)
|-++|.+.-+.
T Consensus 122 lr~~ld~~~~~ 132 (304)
T COG3118 122 LRQFLDKVLPA 132 (304)
T ss_pred HHHHHHHhcCh
Confidence 88888876554
Done!