Query 019712
Match_columns 337
No_of_seqs 170 out of 1971
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 05:59:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019712.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019712hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i68_A Protein EMRE; transmemb 99.1 1.1E-10 3.6E-15 91.4 6.1 72 240-311 34-106 (137)
2 3b5d_A Multidrug transporter E 98.7 5.9E-08 2E-12 73.1 7.4 69 241-309 35-104 (110)
3 2i68_A Protein EMRE; transmemb 98.5 7.8E-08 2.7E-12 75.0 4.5 69 66-140 34-103 (137)
4 3b5d_A Multidrug transporter E 98.5 3.5E-07 1.2E-11 68.8 6.8 68 66-139 34-102 (110)
5 2zxe_G FXYD10, phospholemman-l 66.1 3.8 0.00013 27.2 2.3 20 293-312 25-44 (74)
6 3l1l_A Arginine/agmatine antip 54.1 37 0.0013 30.7 7.9 46 271-316 389-434 (445)
7 3rko_J NADH-quinone oxidoreduc 45.1 1.2E+02 0.0039 24.2 13.0 32 277-308 127-160 (184)
8 4aps_A DI-OR tripeptide H+ sym 40.9 1.9E+02 0.0066 25.9 10.6 14 294-307 457-470 (491)
9 1pw4_A Glycerol-3-phosphate tr 33.3 2.5E+02 0.0085 24.6 20.2 34 3-38 97-132 (451)
10 4aps_A DI-OR tripeptide H+ sym 24.1 3.8E+02 0.013 23.8 14.3 27 169-196 56-83 (491)
No 1
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=99.09 E-value=1.1e-10 Score=91.36 Aligned_cols=72 Identities=15% Similarity=0.197 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHHHHHhhccCceeeeec-cchhHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHhccC
Q 019712 240 YAAIVGTVIRSSIIAWCLQKKGPVFVALF-KPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQG 311 (337)
Q Consensus 240 ~~~~~~~~~~~~~~~~~l~~~~~~~~s~~-~~~~pv~~~~~~~~~~~e~~t~~~~~G~~lii~g~~~~~~~~~ 311 (337)
..+++++.+++.++.+++++.+++.+..+ ..+.|+++.+++++++||++|+.+++|+++|++|+++....++
T Consensus 34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~~ 106 (137)
T 2i68_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLSR 106 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 35666788999999999999999999998 8999999999999999999999999999999999999986543
No 2
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.66 E-value=5.9e-08 Score=73.09 Aligned_cols=69 Identities=16% Similarity=0.215 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHHHHhhccCceeeeec-cchhHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHhc
Q 019712 241 AAIVGTVIRSSIIAWCLQKKGPVFVALF-KPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWA 309 (337)
Q Consensus 241 ~~~~~~~~~~~~~~~~l~~~~~~~~s~~-~~~~pv~~~~~~~~~~~e~~t~~~~~G~~lii~g~~~~~~~ 309 (337)
.++++..+++.++.+++++.+.+.+..+ ..+.|+++.+++++++||++|+.+++|.++|+.|++.....
T Consensus 35 ~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~ 104 (110)
T 3b5d_A 35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (110)
T ss_pred HHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 5555677999999999999999999888 79999999999999999999999999999999999988754
No 3
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.50 E-value=7.8e-08 Score=75.01 Aligned_cols=69 Identities=19% Similarity=0.273 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHHHhhcccCcchhhhh-cchhHHHHHHHHHHHhhccccccccCccchhhHHHHHhhhhheeee
Q 019712 66 MLGVLGICLVQIFAITGIKYSSPTLASAM-GNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSL 140 (337)
Q Consensus 66 ~~g~l~~~~~~~~~~~al~~~~~~~~~~i-~~~~pv~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~ 140 (337)
+.+++...+++.++..++++.+++.+..+ .++.|+++.++++++++|+++.. +++|+++.+.|++++..
T Consensus 34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~------~~~Gi~LIi~GV~ll~~ 103 (137)
T 2i68_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLP------AIIGMMLICAGVLIINL 103 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHhc
Confidence 56666679999999999999999999999 79999999999999999999999 99999999999998754
No 4
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.45 E-value=3.5e-07 Score=68.81 Aligned_cols=68 Identities=18% Similarity=0.257 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHHHHHhhcccCcchhhhh-cchhHHHHHHHHHHHhhccccccccCccchhhHHHHHhhhhheee
Q 019712 66 MLGVLGICLVQIFAITGIKYSSPTLASAM-GNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVS 139 (337)
Q Consensus 66 ~~g~l~~~~~~~~~~~al~~~~~~~~~~i-~~~~pv~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~ 139 (337)
+.+.+...+++.++..++++.|.+.+..+ ..+.|+++.+++++++||+++.. +++|+.+.+.|++++.
T Consensus 34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~------~~~Gi~lIi~Gv~~l~ 102 (110)
T 3b5d_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLP------AIIGMMLICAGVLIIN 102 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHh
Confidence 46666678999999999999999999998 78999999999999999999999 9999999999999874
No 5
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=66.11 E-value=3.8 Score=27.22 Aligned_cols=20 Identities=10% Similarity=0.368 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHhccCc
Q 019712 293 LIGTVVIAFGFYAVIWAQGK 312 (337)
Q Consensus 293 ~~G~~lii~g~~~~~~~~~~ 312 (337)
++++++.++|++++..+|-|
T Consensus 25 ifA~vLfi~GI~iilS~kcr 44 (74)
T 2zxe_G 25 IVAAVLCVIGIIILLAGKCR 44 (74)
T ss_dssp HHHHHHHHHHHHHHTTTC--
T ss_pred hhHHHHHHHHHHHHHcCccc
Confidence 45667778888877765544
No 6
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=54.09 E-value=37 Score=30.68 Aligned_cols=46 Identities=9% Similarity=-0.074 Sum_probs=25.4
Q ss_pred hhHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHhccCccccc
Q 019712 271 LGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQGKESNM 316 (337)
Q Consensus 271 ~~pv~~~~~~~~~~~e~~t~~~~~G~~lii~g~~~~~~~~~~~~~~ 316 (337)
.-++++.+...+..-..-....+.|...++.|+.++.+.++|++++
T Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~~~~~~~~ 434 (445)
T 3l1l_A 389 AVTTIAFLYCIWAVVGSGAKEVMWSFVTLMVITAMYALNYNRLHKN 434 (445)
T ss_dssp HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHSTTCCC
T ss_pred HHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhhhcccC
Confidence 3444454444333322222345568888888888887666554443
No 7
>3rko_J NADH-quinone oxidoreductase subunit J; complex I, proton pump, membrane protein, Na ubiquinone, cytoplasmic membrane; HET: LFA CA7; 3.00A {Escherichia coli}
Probab=45.12 E-value=1.2e+02 Score=24.23 Aligned_cols=32 Identities=13% Similarity=0.038 Sum_probs=23.6
Q ss_pred HHHHHHHhCCCCchhhHHHHHHHHH--HHHHHHh
Q 019712 277 VFMAVMFLGETPHLGSLIGTVVIAF--GFYAVIW 308 (337)
Q Consensus 277 ~~~~~~~~~e~~t~~~~~G~~lii~--g~~~~~~ 308 (337)
--+|..++++-.-+-+..+..+.++ |.+...+
T Consensus 127 ~~iG~~Lft~Y~lpFElaSvlLLvAmIGAIvLar 160 (184)
T 3rko_J 127 KAVGITLFGPYVLAVELASMLLLAGLVVAFHVGR 160 (184)
T ss_dssp HHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3678889999999999999888644 4444443
No 8
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=40.94 E-value=1.9e+02 Score=25.91 Aligned_cols=14 Identities=21% Similarity=0.404 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHH
Q 019712 294 IGTVVIAFGFYAVI 307 (337)
Q Consensus 294 ~G~~lii~g~~~~~ 307 (337)
.+...++.++....
T Consensus 457 ~~~~~~~~~~~~~~ 470 (491)
T 4aps_A 457 FGLGSVVLGIVLVF 470 (491)
T ss_dssp THHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444433
No 9
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=33.29 E-value=2.5e+02 Score=24.62 Aligned_cols=34 Identities=21% Similarity=0.005 Sum_probs=15.1
Q ss_pred hhHHHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHH
Q 019712 3 LVEIGEVGMITLGKAAM--SSGMSNFVYVVYYNALGTF 38 (337)
Q Consensus 3 ~~~~~wg~~~~~~k~~~--~~~~~~~~~~~~r~~~~~i 38 (337)
.+.++++......-... .. +...+...|.+.+..
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~l~G~~ 132 (451)
T 1pw4_A 97 AGLILAAAVMLFMGFVPWATS--SIAVMFVLLFLCGWF 132 (451)
T ss_dssp HHHHHHHHHHHHHHHCHHHHS--SSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhccc--cHHHHHHHHHHHHHH
Confidence 34445555444443310 12 334555566655543
No 10
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=24.08 E-value=3.8e+02 Score=23.82 Aligned_cols=27 Identities=4% Similarity=-0.085 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh-CC
Q 019712 169 LGGLLLTVTCFSSATWKIFQAAVLKE-YP 196 (337)
Q Consensus 169 ~G~~~~l~a~~~~a~~~i~~k~~~~~-~~ 196 (337)
.|.+. ....++..+......++.++ ..
T Consensus 56 ~~~~~-~~~~~~~~~~~~~~g~l~dr~~g 83 (491)
T 4aps_A 56 AASIM-AIYASMVYLSGTIGGFVADRIIG 83 (491)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHhcccc
Confidence 34433 33455556666666666677 53
Done!