Query 019712
Match_columns 337
No_of_seqs 170 out of 1971
Neff 9.3
Searched_HMMs 13730
Date Mon Mar 25 05:59:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019712.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/019712hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 63.9 36 0.0026 27.9 19.3 13 251-263 363-375 (447)
2 d1pv7a_ f.38.1.2 (A:) Lactose 31.4 70 0.0051 25.2 7.9 29 5-33 20-50 (417)
3 d1iwga8 f.35.1.1 (A:513-566,A: 24.7 1.3E+02 0.0095 22.4 9.9 29 274-302 95-123 (222)
4 d2e74g1 f.23.26.1 (G:9-35) Pet 24.0 37 0.0027 15.9 2.8 17 169-185 3-19 (27)
5 d1pw4a_ f.38.1.1 (A:) Glycerol 19.3 2.1E+02 0.015 22.7 15.3 34 177-211 68-101 (447)
6 d1q90r_ f.23.12.1 (R:) ISP sub 14.3 93 0.0068 16.4 4.0 33 53-85 4-36 (39)
7 d1u7ga_ f.44.1.1 (A:) Ammonium 10.3 4.1E+02 0.03 21.5 20.4 26 63-88 197-222 (383)
8 d2axtt1 f.23.34.1 (T:1-30) Pho 10.2 1E+02 0.0076 14.6 2.3 12 277-288 16-27 (30)
9 d1pv7a_ f.38.1.2 (A:) Lactose 7.4 3.8E+02 0.028 20.2 6.4 11 274-284 152-162 (417)
10 d1iwga7 f.35.1.1 (A:7-37,A:331 6.1 1.3E+02 0.0094 22.0 2.3 30 274-303 77-106 (199)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=63.85 E-value=36 Score=27.89 Aligned_cols=13 Identities=15% Similarity=-0.120 Sum_probs=5.8
Q ss_pred HHHHHHhhccCce
Q 019712 251 SIIAWCLQKKGPV 263 (337)
Q Consensus 251 ~~~~~~l~~~~~~ 263 (337)
..+....+..+..
T Consensus 363 ~~~~~~~~~~p~~ 375 (447)
T d1pw4a_ 363 LIGLHALELAPKK 375 (447)
T ss_dssp HHHHHHHHTSCTT
T ss_pred HHHHHHHHHcCHH
Confidence 3344444455443
No 2
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=31.38 E-value=70 Score=25.18 Aligned_cols=29 Identities=3% Similarity=-0.188 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHH-HHh-CCCChHHHHHHHH
Q 019712 5 EIGEVGMITLGKA-AMS-SGMSNFVYVVYYN 33 (337)
Q Consensus 5 ~~~wg~~~~~~k~-~~~-~~~~~~~~~~~r~ 33 (337)
.+.++...++... ..+ .+.++.++...-.
T Consensus 20 ~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s 50 (417)
T d1pv7a_ 20 FFIMGAYFPFFPIWLHDINHISKSDTGIIFA 50 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccCCCHHHHHHHHH
Confidence 3445544443332 222 2778887765543
No 3
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=24.67 E-value=1.3e+02 Score=22.42 Aligned_cols=29 Identities=21% Similarity=0.170 Sum_probs=21.5
Q ss_pred HHHHHHHHHHhCCCCchhhHHHHHHHHHH
Q 019712 274 AIAVFMAVMFLGETPHLGSLIGTVVIAFG 302 (337)
Q Consensus 274 v~~~~~~~~~~~e~~t~~~~~G~~lii~g 302 (337)
+.+.+.+..+.+.+++....+|.++.+.-
T Consensus 95 ~~~~~~~l~~~g~~~~~~~~~g~i~l~Gi 123 (222)
T d1iwga8 95 VIGALLAATFRGLTNDVYFQVGLLTTIGL 123 (222)
T ss_dssp HHHHHHHHHHTTCCBCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCchhhhhcccccchhhh
Confidence 44556677788999999998887775543
No 4
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=24.04 E-value=37 Score=15.93 Aligned_cols=17 Identities=24% Similarity=0.313 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 019712 169 LGGLLLTVTCFSSATWK 185 (337)
Q Consensus 169 ~G~~~~l~a~~~~a~~~ 185 (337)
.|.+...++.++||.|.
T Consensus 3 lgli~~tl~glf~aayq 19 (27)
T d2e74g1 3 LGLVFATLGGLFYAAYQ 19 (27)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred eeehHHHHHHHHHHHHH
Confidence 68888888888888874
No 5
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=19.30 E-value=2.1e+02 Score=22.70 Aligned_cols=34 Identities=6% Similarity=-0.050 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHhhhCCChhHHHHHHHHHHHH
Q 019712 177 TCFSSATWKIFQAAVLKEYPDKINLVFFSCFFGTI 211 (337)
Q Consensus 177 a~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~i 211 (337)
..+.+++......++.+++. .............+
T Consensus 68 ~~~~~~~~~~~~G~l~Dr~g-~r~~~~~~~~~~~~ 101 (447)
T d1pw4a_ 68 ISIAYGFSKFIMGSVSDRSN-PRVFLPAGLILAAA 101 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHSC-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcC-chHHHHHHHHHHHH
Confidence 34555556666666667774 44444333333333
No 6
>d1q90r_ f.23.12.1 (R:) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=14.33 E-value=93 Score=16.44 Aligned_cols=33 Identities=12% Similarity=0.176 Sum_probs=21.3
Q ss_pred CCccCHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 019712 53 GPVLTFSLLCKFFMLGVLGICLVQIFAITGIKY 85 (337)
Q Consensus 53 ~~~~~~~~~~~~~~~g~l~~~~~~~~~~~al~~ 85 (337)
.+...||+..-++..|.........++=++..+
T Consensus 4 VpDMgrR~~MNLll~G~~~~~~~g~l~py~~fF 36 (39)
T d1q90r_ 4 VPDMNKRNIMNLILAGGAGLPITTLALGYGAFF 36 (39)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHhccchhhhhhccceeEEe
Confidence 456678888888888877655555544444333
No 7
>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]}
Probab=10.27 E-value=4.1e+02 Score=21.51 Aligned_cols=26 Identities=8% Similarity=-0.064 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccCc
Q 019712 63 KFFMLGVLGICLVQIFAITGIKYSSP 88 (337)
Q Consensus 63 ~~~~~g~l~~~~~~~~~~~al~~~~~ 88 (337)
....+|.+-.-.++..++-+-.....
T Consensus 197 ~~~~lG~~iLw~gW~gFN~gs~~~~~ 222 (383)
T d1u7ga_ 197 PMVFTGTAILYIGWFGFNAGSAGTAN 222 (383)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGSSSS
T ss_pred hhhhHHHHHHHHHHHHhccccccccc
Confidence 34556666556777777777665543
No 8
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=10.16 E-value=1e+02 Score=14.59 Aligned_cols=12 Identities=33% Similarity=0.833 Sum_probs=5.8
Q ss_pred HHHHHHHhCCCC
Q 019712 277 VFMAVMFLGETP 288 (337)
Q Consensus 277 ~~~~~~~~~e~~ 288 (337)
+++=.++++|+|
T Consensus 16 lfffaiffrepp 27 (30)
T d2axtt1 16 LFFFAIFFREPP 27 (30)
T ss_dssp HHHHHHHTSCCC
T ss_pred HHHHHHHhcCCC
Confidence 333344556655
No 9
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=7.35 E-value=3.8e+02 Score=20.17 Aligned_cols=11 Identities=9% Similarity=0.256 Sum_probs=4.1
Q ss_pred HHHHHHHHHHh
Q 019712 274 AIAVFMAVMFL 284 (337)
Q Consensus 274 v~~~~~~~~~~ 284 (337)
..+..++..+.
T Consensus 152 ~~~~~~~~~l~ 162 (417)
T d1pv7a_ 152 ALGASIVGIMF 162 (417)
T ss_dssp HHHHHHHHHHH
T ss_pred ccccccccccc
Confidence 33333333333
No 10
>d1iwga7 f.35.1.1 (A:7-37,A:331-498) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=6.15 E-value=1.3e+02 Score=22.00 Aligned_cols=30 Identities=13% Similarity=0.154 Sum_probs=18.7
Q ss_pred HHHHHHHHHHhCCCCchhhHHHHHHHHHHH
Q 019712 274 AIAVFMAVMFLGETPHLGSLIGTVVIAFGF 303 (337)
Q Consensus 274 v~~~~~~~~~~~e~~t~~~~~G~~lii~g~ 303 (337)
+...+....++|.+++.....+..+.+...
T Consensus 77 i~~~~~~m~~~g~~l~~~s~~~~~i~igi~ 106 (199)
T d1iwga7 77 LLGTFAVLAAFGFSINTLTMFGMVLAIGLL 106 (199)
T ss_dssp HHHHHHHHHTTTCCSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHhhcCCCchHHHHHHHHHHHHHHh
Confidence 333444456778888887777666655543
Done!