BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019713
(337 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1CIV|A Chain A, Chloroplast Nadp-Dependent Malate Dehydrogenase From
Flaveria Bidentis
Length = 385
Score = 456 bits (1172), Expect = e-128, Method: Compositional matrix adjust.
Identities = 215/265 (81%), Positives = 242/265 (91%), Gaps = 6/265 (2%)
Query: 52 SVNQVQAPVAVEQDDPKSKTNDCYGVFCLTYDLKAEEETKSWKKMVNIAVSGAAGMIANH 111
S +Q+QAP+ P + +C+GVFCLTYDLKAEEETKSWKK++N+AVSGAAGMI+NH
Sbjct: 4 SSDQIQAPL------PAKQKPECFGVFCLTYDLKAEEETKSWKKIINVAVSGAAGMISNH 57
Query: 112 LLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFE 171
LLFKLA+GEV GPDQPI+LKLLGSERS ALEGVAMELEDSL+PLLR+V IGI+PYE+F+
Sbjct: 58 LLFKLASGEVFGPDQPISLKLLGSERSFAALEGVAMELEDSLYPLLRQVSIGIDPYEIFQ 117
Query: 172 DAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALI 231
DAEWALLIGAKPRGPGMERA LLDINGQIFAEQGKALNAVAS NVKV+VVGNPCNTNALI
Sbjct: 118 DAEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNAVASPNVKVMVVGNPCNTNALI 177
Query: 232 CLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNAR 291
CLKNAP+IP KNFHALTRLDENRAKCQLALKAGVFYDKVSN+TIWGNHSTTQVPDFLNA+
Sbjct: 178 CLKNAPNIPPKNFHALTRLDENRAKCQLALKAGVFYDKVSNVTIWGNHSTTQVPDFLNAK 237
Query: 292 INGLPVKEIIKDHKWLEEGFTETIQ 316
I+G+PV E+I+D KWLE+ FT +Q
Sbjct: 238 IHGIPVTEVIRDRKWLEDEFTNMVQ 262
>pdb|7MDH|A Chain A, Structural Basis For Light Acitvation Of A Chloroplast
Enzyme. The Structure Of Sorghum Nadp-Malate
Dehydrogenase In Its Oxidized Form
pdb|7MDH|B Chain B, Structural Basis For Light Acitvation Of A Chloroplast
Enzyme. The Structure Of Sorghum Nadp-Malate
Dehydrogenase In Its Oxidized Form
pdb|7MDH|C Chain C, Structural Basis For Light Acitvation Of A Chloroplast
Enzyme. The Structure Of Sorghum Nadp-Malate
Dehydrogenase In Its Oxidized Form
pdb|7MDH|D Chain D, Structural Basis For Light Acitvation Of A Chloroplast
Enzyme. The Structure Of Sorghum Nadp-Malate
Dehydrogenase In Its Oxidized Form
Length = 375
Score = 452 bits (1164), Expect = e-128, Method: Compositional matrix adjust.
Identities = 214/245 (87%), Positives = 232/245 (94%)
Query: 73 DCYGVFCLTYDLKAEEETKSWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKL 132
DC+GVFC TYDLKAE++TKSWKK+VNIAVSGAAGMI+NHLLFKLA+GEV G DQPIALKL
Sbjct: 9 DCFGVFCTTYDLKAEDKTKSWKKLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKL 68
Query: 133 LGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAG 192
LGSERS QALEGVAMELEDSL+PLLREV IGI+PYE+FED +WALLIGAKPRGPGMERA
Sbjct: 69 LGSERSFQALEGVAMELEDSLYPLLREVSIGIDPYEVFEDVDWALLIGAKPRGPGMERAA 128
Query: 193 LLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDE 252
LLDINGQIFA+QGKALNAVAS+NVKV+VVGNPCNTNALICLKNAP IPAKNFHALTRLDE
Sbjct: 129 LLDINGQIFADQGKALNAVASKNVKVLVVGNPCNTNALICLKNAPDIPAKNFHALTRLDE 188
Query: 253 NRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFT 312
NRAKCQLALKAGVFYDKVSN+TIWGNHSTTQVPDFLNA+I+G PVKE+IK KWLEE FT
Sbjct: 189 NRAKCQLALKAGVFYDKVSNVTIWGNHSTTQVPDFLNAKIDGRPVKEVIKRTKWLEEEFT 248
Query: 313 ETIQK 317
T+QK
Sbjct: 249 ITVQK 253
>pdb|1WZE|A Chain A, Structural Basis For Alteration Of Cofactor Specificity Of
Malate Dehydrogenase From Thermus Flavus
pdb|1WZE|B Chain B, Structural Basis For Alteration Of Cofactor Specificity Of
Malate Dehydrogenase From Thermus Flavus
pdb|1WZI|A Chain A, Structural Basis For Alteration Of Cofactor Specificity Of
Malate Dehydrogenase From Thermus Flavus
pdb|1WZI|B Chain B, Structural Basis For Alteration Of Cofactor Specificity Of
Malate Dehydrogenase From Thermus Flavus
Length = 327
Score = 258 bits (660), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 126/224 (56%), Positives = 162/224 (72%), Gaps = 1/224 (0%)
Query: 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSL 153
K V +AV+GAAG I LLF++AAGE+LG DQP+ L+LLGSERS QALEGV MELED
Sbjct: 2 KAPVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLGSERSFQALEGVVMELEDCA 61
Query: 154 FPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVAS 213
FPLL ++ +P F+DA++ALL+GA PR GMER LL +NG+IF EQG+AL VA
Sbjct: 62 FPLLAGLEATDDPKVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAK 121
Query: 214 RNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNM 273
++VKV+VVGNP NTNALI KNAP + +NF A+TRLD NRAK QLA K G D++ M
Sbjct: 122 KDVKVLVVGNPANTNALIAYKNAPGLNPRNFTAMTRLDHNRAKAQLAKKTGTGVDRIRRM 181
Query: 274 TIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQK 317
T+WGNHS+T PD +A ++G P E++ D +W E+ F T+ +
Sbjct: 182 TVWGNHSSTMFPDLFHAEVDGRPALELV-DMEWYEKVFIPTVAQ 224
>pdb|1IZ9|A Chain A, Crystal Structure Of Malate Dehydrogenase From Thermus
Thermophilus Hb8
pdb|1IZ9|B Chain B, Crystal Structure Of Malate Dehydrogenase From Thermus
Thermophilus Hb8
pdb|1Y7T|A Chain A, Crystal Structure Of Nad(H)-Depenent Malate Dehydrogenase
Complexed With Nadph
pdb|1Y7T|B Chain B, Crystal Structure Of Nad(H)-Depenent Malate Dehydrogenase
Complexed With Nadph
pdb|2CVQ|A Chain A, Crystal Structure Of Nad(H)-Dependent Malate Dehydrogenase
Complexed With Nadph
pdb|2CVQ|B Chain B, Crystal Structure Of Nad(H)-Dependent Malate Dehydrogenase
Complexed With Nadph
Length = 327
Score = 246 bits (627), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 120/224 (53%), Positives = 160/224 (71%), Gaps = 1/224 (0%)
Query: 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSL 153
K V +AV+GAAG I LLF++AAGE+LG DQP+ L+LL ++++ALEGV MELED
Sbjct: 2 KAPVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCA 61
Query: 154 FPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVAS 213
FPLL ++ +P F+DA++ALL+GA PR GMER LL +NG+IF EQG+AL VA
Sbjct: 62 FPLLAGLEATDDPKVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAK 121
Query: 214 RNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNM 273
++VKV+VVGNP NTNALI KNAP + +NF A+TRLD NRAK QLA K G D++ M
Sbjct: 122 KDVKVLVVGNPANTNALIAYKNAPGLNPRNFTAMTRLDHNRAKAQLAKKTGTGVDRIRRM 181
Query: 274 TIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQK 317
T+WGNHS+T PD +A ++G P E++ D +W E+ F T+ +
Sbjct: 182 TVWGNHSSTMFPDLFHAEVDGRPALELV-DMEWYEKVFIPTVAQ 224
>pdb|1BMD|A Chain A, Determinants Of Protein Thermostability Observed In The
1.9 Angstroms Crystal Structure Of Malate Dehydrogenase
From The Thermophilic Bacterium Thermus Flavus
pdb|1BMD|B Chain B, Determinants Of Protein Thermostability Observed In The
1.9 Angstroms Crystal Structure Of Malate Dehydrogenase
From The Thermophilic Bacterium Thermus Flavus
Length = 327
Score = 245 bits (625), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 120/224 (53%), Positives = 160/224 (71%), Gaps = 1/224 (0%)
Query: 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSL 153
K V +AV+GAAG I LLF++AAGE+LG DQP+ L+LL ++++ALEGV MELED
Sbjct: 2 KAPVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCA 61
Query: 154 FPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVAS 213
FPLL ++ +P F+DA++ALL+GA PR GMER LL +NG+IF EQG+AL VA
Sbjct: 62 FPLLAGLEATDDPDVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAK 121
Query: 214 RNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNM 273
++VKV+VVGNP NTNALI KNAP + +NF A+TRLD NRAK QLA K G D++ M
Sbjct: 122 KDVKVLVVGNPANTNALIAYKNAPGLNPRNFTAMTRLDHNRAKAQLAKKTGTGVDRIRRM 181
Query: 274 TIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQK 317
T+WGNHS+T PD +A ++G P E++ D +W E+ F T+ +
Sbjct: 182 TVWGNHSSTMFPDLFHAEVDGRPALELV-DMEWYEKVFIPTVAQ 224
>pdb|1BDM|A Chain A, The Structure At 1.8 Angstroms Resolution Of A Single Site
Mutant (T189i) Of Malate Dehydrogenase From Thermus
Flavus With Increased Enzymatic Activity
pdb|1BDM|B Chain B, The Structure At 1.8 Angstroms Resolution Of A Single Site
Mutant (T189i) Of Malate Dehydrogenase From Thermus
Flavus With Increased Enzymatic Activity
Length = 327
Score = 243 bits (619), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 119/224 (53%), Positives = 159/224 (70%), Gaps = 1/224 (0%)
Query: 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSL 153
K V +AV+GAAG I LLF++AAGE+LG DQP+ L+LL ++++ALEGV MELED
Sbjct: 2 KAPVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCA 61
Query: 154 FPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVAS 213
FPLL ++ +P F+DA++ALL+GA PR GMER LL +NG+IF EQG+AL VA
Sbjct: 62 FPLLAGLEATDDPDVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAK 121
Query: 214 RNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNM 273
++VKV+VVGNP NTNALI KNAP + +NF A+TRLD NRAK QLA K G D++ M
Sbjct: 122 KDVKVLVVGNPANTNALIAYKNAPGLNPRNFTAMTRLDHNRAKAQLAKKTGTGVDRIRRM 181
Query: 274 TIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQK 317
T+WGNHS+ PD +A ++G P E++ D +W E+ F T+ +
Sbjct: 182 TVWGNHSSIMFPDLFHAEVDGRPALELV-DMEWYEKVFIPTVAQ 224
>pdb|1B8P|A Chain A, Malate Dehydrogenase From Aquaspirillum Arcticum
pdb|1B8U|A Chain A, Malate Dehydrogenase From Aquaspirillum Arcticum
pdb|1B8V|A Chain A, Malate Dehydrogenase From Aquaspirillum Arcticum
Length = 329
Score = 233 bits (595), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 116/226 (51%), Positives = 158/226 (69%), Gaps = 2/226 (0%)
Query: 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLG--SERSLQALEGVAMELED 151
K + +AV+GAAG I LLF++A G++LG DQP+ L+LL +E++ +AL+GV ME++D
Sbjct: 3 KTPMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNEKAQKALQGVMMEIDD 62
Query: 152 SLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAV 211
FPLL + +P F+DA+ ALL+GA+PRGPGMER LL+ N QIF QGKA++AV
Sbjct: 63 CAFPLLAGMTAHADPMTAFKDADVALLVGARPRGPGMERKDLLEANAQIFTVQGKAIDAV 122
Query: 212 ASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVS 271
ASRN+KV+VVGNP NTNA I +K+APS+PAKNF A+ RLD NRA Q+A K G +
Sbjct: 123 ASRNIKVLVVGNPANTNAYIAMKSAPSLPAKNFTAMLRLDHNRALSQIAAKTGKPVSSIE 182
Query: 272 NMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQK 317
+ +WGNHS T D+ A+I+G VK++I D W + F T+ K
Sbjct: 183 KLFVWGNHSPTMYADYRYAQIDGASVKDMINDDAWNRDTFLPTVGK 228
>pdb|3D5T|A Chain A, Crystal Structure Of Malate Dehydrogenase From
Burkholderia Pseudomallei
pdb|3D5T|B Chain B, Crystal Structure Of Malate Dehydrogenase From
Burkholderia Pseudomallei
pdb|3D5T|C Chain C, Crystal Structure Of Malate Dehydrogenase From
Burkholderia Pseudomallei
pdb|3D5T|D Chain D, Crystal Structure Of Malate Dehydrogenase From
Burkholderia Pseudomallei
Length = 331
Score = 217 bits (552), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 112/219 (51%), Positives = 146/219 (66%)
Query: 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLR 158
+AV+GAAG IA LLF++A G++LG DQP+ L+LL ++ A++GV MEL+D FPLL
Sbjct: 12 VAVTGAAGQIAYSLLFRIANGDLLGKDQPVILQLLDLPQAQAAVKGVVMELDDCAFPLLA 71
Query: 159 EVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKV 218
V I +P F+DA+ ALL+GA+PR GMER LL N +IF QG ALN VASR+VKV
Sbjct: 72 GVVITDDPKVAFKDADVALLVGARPRSKGMERKDLLSANAEIFTVQGAALNEVASRDVKV 131
Query: 219 IVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGN 278
+VVGNP NTNA I +K+AP +P KNF A+ RLD NRA QLA K+G + + +WGN
Sbjct: 132 LVVGNPANTNAYIAMKSAPDLPKKNFTAMLRLDHNRALSQLAAKSGKPVASIEKLAVWGN 191
Query: 279 HSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQK 317
HS T PDF A G + ++I D W + F T+ K
Sbjct: 192 HSPTMYPDFRFATAEGESLLKLINDDVWNRDTFIPTVGK 230
>pdb|4MDH|A Chain A, Refined Crystal Structure Of Cytoplasmic Malate
Dehydrogenase At 2.5-Angstroms Resolution
pdb|4MDH|B Chain B, Refined Crystal Structure Of Cytoplasmic Malate
Dehydrogenase At 2.5-Angstroms Resolution
Length = 334
Score = 207 bits (527), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 112/226 (49%), Positives = 146/226 (64%), Gaps = 6/226 (2%)
Query: 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL 156
+ + V+GAAG IA LL+ + G V G DQPI L LL + L+GV MEL+D PL
Sbjct: 5 IRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPL 64
Query: 157 LREVKIGINPYEL-FEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRN 215
L++V I + E+ F+D + A+L+G+ PR GMER LL N +IF QG AL+ A ++
Sbjct: 65 LKDV-IATDKEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKS 123
Query: 216 VKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTI 275
VKVIVVGNP NTN L K+APSIP +NF LTRLD NRAK Q+ALK GV D V N+ I
Sbjct: 124 VKVIVVGNPANTNCLTASKSAPSIPKENFSCLTRLDHNRAKAQIALKLGVTSDDVKNVII 183
Query: 276 WGNHSTTQVPDFLNARI----NGLPVKEIIKDHKWLEEGFTETIQK 317
WGNHS+TQ PD +A++ + V E +KD WL+ F T+Q+
Sbjct: 184 WGNHSSTQYPDVNHAKVKLQAKEVGVYEAVKDDSWLKGEFITTVQQ 229
>pdb|5MDH|A Chain A, Crystal Structure Of Ternary Complex Of Porcine
Cytoplasmic Malate Dehydrogenase Alpha-Ketomalonate And
Tnad At 2.4 Angstroms Resolution
pdb|5MDH|B Chain B, Crystal Structure Of Ternary Complex Of Porcine
Cytoplasmic Malate Dehydrogenase Alpha-Ketomalonate And
Tnad At 2.4 Angstroms Resolution
Length = 333
Score = 207 bits (527), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 112/226 (49%), Positives = 146/226 (64%), Gaps = 6/226 (2%)
Query: 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL 156
+ + V+GAAG IA LL+ + G V G DQPI L LL + L+GV MEL+D PL
Sbjct: 4 IRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPL 63
Query: 157 LREVKIGINPYEL-FEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRN 215
L++V I + E+ F+D + A+L+G+ PR GMER LL N +IF QG AL+ A ++
Sbjct: 64 LKDV-IATDKEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKS 122
Query: 216 VKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTI 275
VKVIVVGNP NTN L K+APSIP +NF LTRLD NRAK Q+ALK GV D V N+ I
Sbjct: 123 VKVIVVGNPANTNCLTASKSAPSIPKENFSCLTRLDHNRAKAQIALKLGVTSDDVKNVII 182
Query: 276 WGNHSTTQVPDFLNARI----NGLPVKEIIKDHKWLEEGFTETIQK 317
WGNHS+TQ PD +A++ + V E +KD WL+ F T+Q+
Sbjct: 183 WGNHSSTQYPDVNHAKVKLQAKEVGVYEAVKDDSWLKGEFITTVQQ 228
>pdb|4H7P|A Chain A, Crystal Structure Of A Putative Cytosolic Malate
Dehydrogenase From Leishmania Major Friedlin
pdb|4H7P|B Chain B, Crystal Structure Of A Putative Cytosolic Malate
Dehydrogenase From Leishmania Major Friedlin
pdb|4I1I|A Chain A, Crystal Structure Of A Putative Cytosolic Malate
Dehydrogenase From Leishmania Major Friedlin In Complex
With Nad
pdb|4I1I|B Chain B, Crystal Structure Of A Putative Cytosolic Malate
Dehydrogenase From Leishmania Major Friedlin In Complex
With Nad
Length = 345
Score = 195 bits (496), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 109/234 (46%), Positives = 151/234 (64%), Gaps = 2/234 (0%)
Query: 84 LKAEEETKSWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALE 143
L+A+ + V +AV+GAAG I L+ +A G +LGP P+ L+LL E +L+AL
Sbjct: 12 LEAQTQGPGSMSAVKVAVTGAAGQIGYALVPLIARGALLGPTTPVELRLLDIEPALKALA 71
Query: 144 GVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAE 203
GV ELED FPLL +V + +P F+ A++ GA PR GMER LL++N +IF E
Sbjct: 72 GVEAELEDCAFPLLDKVVVTADPRVAFDGVAIAIMCGAFPRKAGMERKDLLEMNARIFKE 131
Query: 204 QGKALNAVASRNVKVIVVGNPCNTNALICLKNAPS-IPAKNFHALTRLDENRAKCQLALK 262
QG+A+ AVA+ + +V+VVGNP NTNALI LK+A + ++ A+TRLD NRA LA K
Sbjct: 132 QGEAIAAVAASDCRVVVVGNPANTNALILLKSAQGKLNPRHVTAMTRLDHNRALSLLARK 191
Query: 263 AGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQ 316
AGV +V N+ IWGNHS+TQVPD +A I P +E IKD L++ F + ++
Sbjct: 192 AGVPVSQVRNVIIWGNHSSTQVPDTDSAVIGTTPAREAIKDDA-LDDDFVQVVR 244
>pdb|3FI9|A Chain A, Crystal Structure Of Malate Dehydrogenase From
Porphyromonas Gingivalis
pdb|3FI9|B Chain B, Crystal Structure Of Malate Dehydrogenase From
Porphyromonas Gingivalis
Length = 343
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 64/224 (28%), Positives = 101/224 (45%), Gaps = 17/224 (7%)
Query: 99 IAVSGAAGMIANHLLFKLAAGEVLGPD----QPIALKLLGSERSLQALEGVAMELEDSLF 154
+ + GAAGMI +++ + AA L P+ P A+ LEGVA E+ F
Sbjct: 11 LTIVGAAGMIGSNMA-QTAAMMRLTPNLCLYDPFAV----------GLEGVAEEIRHCGF 59
Query: 155 PLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASR 214
L + + E DA++ + G PR GM R LL N +I A+ GK + +
Sbjct: 60 EGLN-LTFTSDIKEALTDAKYIVSSGGAPRKEGMTREDLLKGNAEIAAQLGKDIKSYCPD 118
Query: 215 NVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMT 274
VI++ NP + L+ L + P++ L LD R + +LA G+ V+N
Sbjct: 119 CKHVIIIFNPADITGLVTLIYSGLKPSQ-VTTLAGLDSTRLQSELAKHFGIKQSLVTNTR 177
Query: 275 IWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKV 318
+G H A++NG P+ ++I K E + E Q+V
Sbjct: 178 TYGGHGEQMAVFASTAKVNGTPLTDLIGTDKLTNEQWAELKQRV 221
>pdb|1HYG|A Chain A, Crystal Structure Of Mj0490 Gene Product, The Family Of
LactateMALATE DEHYDROGENASE
pdb|1HYG|B Chain B, Crystal Structure Of Mj0490 Gene Product, The Family Of
LactateMALATE DEHYDROGENASE
pdb|1HYE|A Chain A, Crystal Structure Of The Mj0490 Gene Product, The Family
Of LactateMALATE DEHYDROGENASE, DIMERIC STRUCTURE
Length = 313
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 68/258 (26%), Positives = 108/258 (41%), Gaps = 33/258 (12%)
Query: 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL 156
+ + + GA+G + + L A E D L L+G E S+ LEG+ ++ D+L
Sbjct: 1 MKVTIIGASGRVGSATAL-LLAKEPFMKD----LVLIGREHSINKLEGLREDIYDALAGT 55
Query: 157 LREVKIGINPYE---LFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVAS 213
+ I + E + ++++ ++ PR GM R L N +I + K + +
Sbjct: 56 RSDANIYVESDENLRIIDESDVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEIC- 114
Query: 214 RNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNM 273
+ K+ V+ NP + L ++ + F T LD R K +A GV D+V
Sbjct: 115 -DTKIFVITNPVDVMTYKALVDSKFERNQVFGLGTHLDSLRFKVAIAKFFGVHIDEVRT- 172
Query: 274 TIWGNHSTTQVPDFLNARING-----------LPVKEIIKDHKWLEEGFTETIQKVRLVD 322
I G H + VP I G LP+ EII+D K T+ Q +RL
Sbjct: 173 RIIGEHGDSMVPLLSATSIGGIPIQKFERFKELPIDEIIEDVK------TKGEQIIRLKG 226
Query: 323 NFTL-----ILFVMNCIV 335
IL V+ CIV
Sbjct: 227 GSEFGPAAAILNVVRCIV 244
>pdb|1A5Z|A Chain A, Lactate Dehydrogenase From Thermotoga Maritima (tmldh)
Length = 319
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 92/208 (44%), Gaps = 16/208 (7%)
Query: 122 LGPDQPIALKLLGSERSL-------QALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174
+G AL + G R + + EG A++L P R I Y + ++
Sbjct: 11 VGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGT-PFTRRANIYAGDYADLKGSD 69
Query: 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLK 234
++ P+ PG R LL N ++ E + ++ A ++ VIVV NP + LK
Sbjct: 70 VVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYAPDSI-VIVVTNPVDVLTYFFLK 128
Query: 235 NAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARING 294
+ P K F + T LD R + +A G F + ++ + G H ++VP + A I G
Sbjct: 129 ESGMDPRKVFGSGTVLDTARLRTLIAQHCG-FSPRSVHVYVIGEHGDSEVPVWSGAMIGG 187
Query: 295 LPVKEIIK-----DHKWLEEGFTETIQK 317
+P++ + + D K LE F E ++
Sbjct: 188 IPLQNMCQVCQKCDSKILEN-FAEKTKR 214
>pdb|2HJR|A Chain A, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|B Chain B, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|C Chain C, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|D Chain D, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|E Chain E, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|F Chain F, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|G Chain G, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|H Chain H, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|I Chain I, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|J Chain J, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|K Chain K, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|L Chain L, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
Length = 328
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 83/193 (43%), Gaps = 9/193 (4%)
Query: 131 KLLGSERSLQALEGV----AMELEDSLFPLLREVKI-GINPYELFEDAEWALLIGAKPRG 185
K LG +EGV A++L + + KI G N YE ++++ ++ PR
Sbjct: 36 KDLGDVYMFDIIEGVPQGKALDLNHCMALIGSPAKIFGENNYEYLQNSDVVIITAGVPRK 95
Query: 186 PGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFH 245
P M R+ LL +N +I + + N VI + NP + + K IPA
Sbjct: 96 PNMTRSDLLTVNAKIVGSVAENVGKYCP-NAFVICITNPLDA-MVYYFKEKSGIPANKVC 153
Query: 246 ALTR-LDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDH 304
++ LD R +C L+ GV VS + + G H +P + I G+ + + ++
Sbjct: 154 GMSGVLDSARFRCNLSRALGVKPSDVSAIVV-GGHGDEMIPLTSSVTIGGILLSDFVEQG 212
Query: 305 KWLEEGFTETIQK 317
K E I+K
Sbjct: 213 KITHSQINEIIKK 225
>pdb|2D4A|A Chain A, Structure Of The Malate Dehydrogenase From Aeropyrum
Pernix
pdb|2D4A|B Chain B, Structure Of The Malate Dehydrogenase From Aeropyrum
Pernix
pdb|2D4A|C Chain C, Structure Of The Malate Dehydrogenase From Aeropyrum
Pernix
pdb|2D4A|D Chain D, Structure Of The Malate Dehydrogenase From Aeropyrum
Pernix
Length = 308
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 80/176 (45%), Gaps = 8/176 (4%)
Query: 143 EGVAMELEDSLFPLLREVKI-GINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIF 201
+G A++L + L +++I G N YE ++ L+ R PGM R LL+ N
Sbjct: 37 QGEALDLAHAAAELGVDIRISGSNSYEDMRGSDIVLVTAGIGRKPGMTREQLLEANANTM 96
Query: 202 AEQGKALNAVASRNVKVIVVGNPCNTNALICLKNA--PSIPAKNFHALTRLDENRAKCQL 259
A+ + + A A ++ V++ NP + + K P F + LD R +
Sbjct: 97 ADLAEKIKAYA-KDAIVVITTNPVDAMTYVMYKKTGFPRERVIGFSGI--LDSARMAYYI 153
Query: 260 ALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETI 315
+ K GV + V N + G H P + + G+P++ ++ + +EE +ET+
Sbjct: 154 SQKLGVSFKSV-NAIVLGMHGQKMFPVPRLSSVGGVPLEHLMSKEE-IEEVVSETV 207
>pdb|3GVH|A Chain A, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis
pdb|3GVH|B Chain B, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis
pdb|3GVH|C Chain C, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis
pdb|3GVH|D Chain D, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis
pdb|3GVI|A Chain A, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis In Complex With Adp
pdb|3GVI|B Chain B, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis In Complex With Adp
pdb|3GVI|C Chain C, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis In Complex With Adp
pdb|3GVI|D Chain D, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis In Complex With Adp
pdb|3GVI|E Chain E, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis In Complex With Adp
pdb|3GVI|F Chain F, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis In Complex With Adp
Length = 324
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 72/158 (45%), Gaps = 4/158 (2%)
Query: 163 GINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222
G N Y E A+ ++ PR PGM R LL IN ++ + G + A VI +
Sbjct: 66 GANDYAAIEGADVVIVTAGVPRKPGMSRDDLLGINLKVMEQVGAGIKKYAPEAF-VICIT 124
Query: 223 NPCNTNALICLKNAPSIPAKNFHALTR-LDENRAKCQLALKAGVFYDKVSNMTIWGNHST 281
NP + + L+ +PA + LD R + L+ + V + V+ + + G H
Sbjct: 125 NPLDA-MVWALQKFSGLPAHKVVGMAGVLDSARFRYFLSEEFNVSVEDVT-VFVLGGHGD 182
Query: 282 TQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVR 319
+ VP + + G+P+ +++K ++ + IQ+ R
Sbjct: 183 SMVPLARYSTVAGIPLPDLVKMGWTSQDKLDKIIQRTR 220
>pdb|1GV0|A Chain A, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GV0|B Chain B, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
Length = 310
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 79/169 (46%), Gaps = 7/169 (4%)
Query: 143 EGVAMELEDSLFPLLREVKI-GINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIF 201
+G A+++ +S L + K+ G N Y +++ ++ PR PGM R LL +N I
Sbjct: 39 QGKALDMYESGPVGLFDTKVTGSNDYADTANSDIVVITAGLPRKPGMTREDLLSMNAGIV 98
Query: 202 AE-QGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTR-LDENRAKCQL 259
E G+ + S+N ++VV NP + + + + +P + + LD R + +
Sbjct: 99 REVTGRIME--HSKNPIIVVVSNPLDIMTHVAWQKS-GLPKERVIGMAGVLDSARFRSFI 155
Query: 260 ALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLE 308
A++ GV V+ + G H VP + G+PV ++I + E
Sbjct: 156 AMELGVSMQDVT-ACVLGGHGDAMVPVVKYTTVAGIPVADLISAERIAE 203
>pdb|3NEP|X Chain X, 1.55a Resolution Structure Of Malate Dehydrogenase From
Salinibacter Ruber
Length = 314
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 62/147 (42%), Gaps = 4/147 (2%)
Query: 163 GINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222
G N Y ED++ ++ PR PGM R LL N +I + S + +IVV
Sbjct: 60 GTNDYGPTEDSDVCIITAGLPRSPGMSRDDLLAKNTEIVGGVTEQF-VEGSPDSTIIVVA 118
Query: 223 NPCNTNALICLKNAPSIPAKNFHALTR-LDENRAKCQLALKAGVFYDKVSNMTIWGNHST 281
NP + + + A P + LD R + +A + V V + + G H
Sbjct: 119 NPLDVMTYVAYE-ASGFPTNRVMGMAGVLDTGRFRSFIAEELDVSVRDVQAL-LMGGHGD 176
Query: 282 TQVPDFLNARINGLPVKEIIKDHKWLE 308
T VP + G+PV ++I D + E
Sbjct: 177 TMVPLPRYTTVGGIPVPQLIDDARIEE 203
>pdb|1GUY|A Chain A, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GUY|C Chain C, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1UXG|A Chain A, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-Dimer Interface.
pdb|1UXG|B Chain B, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-Dimer Interface
Length = 309
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 82/179 (45%), Gaps = 7/179 (3%)
Query: 128 IALKLLGSERSLQALEGV----AMELEDSLFPLLREVKI-GINPYELFEDAEWALLIGAK 182
+A K LG L +EGV A++L ++ +V++ G N Y +++ ++
Sbjct: 21 LAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNYADTANSDVIVVTSGA 80
Query: 183 PRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAK 242
PR PGM R L+ +N I + A S N +I+V NP + + + + +
Sbjct: 81 PRKPGMSREDLIKVNADI-TRACISQAAPLSPNAVIIMVNNPLDAMTYLAAEVSGFPKER 139
Query: 243 NFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEII 301
LD R + +A++AGV + V M + G H VP + I+G+PV E I
Sbjct: 140 VIGQAGVLDAARYRTFIAMEAGVSVEDVQAM-LMGGHGDEMVPLPRFSTISGIPVSEFI 197
>pdb|1UXH|A Chain A, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-Dimer Interface
pdb|1UXH|B Chain B, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-Dimer Interface
pdb|1UXK|A Chain A, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-dimer Interface
pdb|1UXK|C Chain C, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-dimer Interface
Length = 309
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 81/179 (45%), Gaps = 7/179 (3%)
Query: 128 IALKLLGSERSLQALEGV----AMELEDSLFPLLREVKI-GINPYELFEDAEWALLIGAK 182
+A K LG L +EGV A++L ++ +V++ G N Y +++ ++
Sbjct: 21 LAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNYADTANSDVIVVTSGA 80
Query: 183 PRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAK 242
PR PGM R L+ +N I + A S N +I+V NP + + + + +
Sbjct: 81 PRKPGMSREDLIKVNADI-TRACISQAAPLSPNAVIIMVNNPLDAMTYLAAEVSGFPKER 139
Query: 243 NFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEII 301
LD R + +A++AGV V M + G H VP + I+G+PV E I
Sbjct: 140 VIGQAGVLDAARYRTFIAMEAGVSVQDVQAM-LMGGHGDEMVPLPRFSTISGIPVSEFI 197
>pdb|1UXI|A Chain A, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-Dimer Interface
pdb|1UXI|B Chain B, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-Dimer Interface
pdb|1UXJ|A Chain A, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-dimer Interface
pdb|1UXJ|C Chain C, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-dimer Interface
Length = 309
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 81/179 (45%), Gaps = 7/179 (3%)
Query: 128 IALKLLGSERSLQALEGV----AMELEDSLFPLLREVKI-GINPYELFEDAEWALLIGAK 182
+A K LG L +EGV A++L ++ +V++ G N Y +++ ++
Sbjct: 21 LAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNYADTANSDVIVVTSGA 80
Query: 183 PRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAK 242
PR PGM R L+ +N I + A S N +I+V NP + + + + +
Sbjct: 81 PRKPGMSREDLIKVNADI-TRACISQAAPLSPNAVIIMVNNPLDAMTYLAAEVSGFPKER 139
Query: 243 NFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEII 301
LD R + +A++AGV V M + G H VP + I+G+PV E I
Sbjct: 140 VIGQAGVLDAARYRTFIAMEAGVSVKDVQAM-LMGGHGDEMVPLPRFSTISGIPVSEFI 197
>pdb|1UR5|A Chain A, Stabilization Of A Tetrameric Malate Dehydrogenase By
Introduction Of A Disulfide Bridge At The DimerDIMER
Interface
pdb|1UR5|C Chain C, Stabilization Of A Tetrameric Malate Dehydrogenase By
Introduction Of A Disulfide Bridge At The DimerDIMER
Interface
Length = 309
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 82/179 (45%), Gaps = 7/179 (3%)
Query: 128 IALKLLGSERSLQALEGV----AMELEDSLFPLLREVKI-GINPYELFEDAEWALLIGAK 182
+A K LG L +EGV A++L ++ +V++ G N Y +++ ++
Sbjct: 21 LAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNYADTANSDVIVVTSGA 80
Query: 183 PRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAK 242
PR PGM R L+ +N I + A S N +I+V NP + + + + +
Sbjct: 81 PRKPGMSREDLIKVNADI-TRACISQAAPLSPNAVIIMVNNPLDAMTYLAAEVSGFPKER 139
Query: 243 NFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEII 301
LD R + +A++AGV + V M + G H VP + I+G+PV E I
Sbjct: 140 VIGQAGVLDAARYRTFIAMEAGVSVEDVQAM-LMGGHGDEMVPLPRFSCISGIPVSEFI 197
>pdb|1GV1|A Chain A, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GV1|B Chain B, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GV1|C Chain C, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GV1|D Chain D, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
Length = 310
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 61/140 (43%), Gaps = 4/140 (2%)
Query: 163 GINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222
G N Y D++ ++ PR PGM R LL N I E + S+N +IVV
Sbjct: 60 GSNDYADTADSDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMK-HSKNPIIIVVS 118
Query: 223 NPCNTNALICLKNAPSIPAKNFHALTR-LDENRAKCQLALKAGVFYDKVSNMTIWGNHST 281
NP + + + +P + + LD R + +A++ GV + N + G H
Sbjct: 119 NPLDIMTHVAWVRS-GLPKERVIGMAGVLDAARFRSFIAMELGVSMQDI-NACVLGGHGD 176
Query: 282 TQVPDFLNARINGLPVKEII 301
VP + G+P+ +++
Sbjct: 177 AMVPVVKYTTVAGIPISDLL 196
>pdb|3P7M|A Chain A, Structure Of Putative Lactate Dehydrogenase From
Francisella Tularensis Subsp. Tularensis Schu S4
pdb|3P7M|B Chain B, Structure Of Putative Lactate Dehydrogenase From
Francisella Tularensis Subsp. Tularensis Schu S4
pdb|3P7M|C Chain C, Structure Of Putative Lactate Dehydrogenase From
Francisella Tularensis Subsp. Tularensis Schu S4
pdb|3P7M|D Chain D, Structure Of Putative Lactate Dehydrogenase From
Francisella Tularensis Subsp. Tularensis Schu S4
Length = 321
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 68/159 (42%), Gaps = 6/159 (3%)
Query: 163 GINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222
G N Y+ E+++ ++ PR PG R LL IN ++ G+ + N VI +
Sbjct: 64 GTNDYKDLENSDVVIVTAGVPRKPGXSRDDLLGINIKVXQTVGEGIKHNCP-NAFVICIT 122
Query: 223 NPCN--TNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHS 280
NP + N L P K LD R + LA + V +V + G H
Sbjct: 123 NPLDIXVNXLQKFSGVPD--NKIVGXAGVLDSARFRTFLADELNVSVQQVQ-AYVXGGHG 179
Query: 281 TTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVR 319
T VP + + G+ +++++K+ K +E + + R
Sbjct: 180 DTXVPLTKXSNVAGVSLEQLVKEGKLKQERLDAIVSRTR 218
>pdb|1GUZ|A Chain A, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GUZ|B Chain B, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GUZ|C Chain C, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GUZ|D Chain D, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
Length = 310
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 73/161 (45%), Gaps = 5/161 (3%)
Query: 143 EGVAMELEDSLFPLLREVKI-GINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIF 201
+G A+++ +S L + K+ G N Y +++ ++ PR PGM R LL N I
Sbjct: 39 QGKALDMYESGPVGLFDTKVTGSNDYADTANSDIVIITAGLPRKPGMTREDLLMKNAGIV 98
Query: 202 AEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTR-LDENRAKCQLA 260
E + S+N +IVV NP + + + +P + + LD R + +A
Sbjct: 99 KEVTDNIMK-HSKNPIIIVVSNPLDIMTHVAWVRS-GLPKERVIGMAGVLDAARFRSFIA 156
Query: 261 LKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEII 301
++ GV + N + G H VP + G+P+ +++
Sbjct: 157 MELGVSMQDI-NACVLGGHGDAMVPVVKYTTVAGIPISDLL 196
>pdb|3VKU|A Chain A, Penta Mutant Of Lactobacillus Casei Lactate Dehydrogenase
pdb|3VKU|B Chain B, Penta Mutant Of Lactobacillus Casei Lactate Dehydrogenase
pdb|3VKU|C Chain C, Penta Mutant Of Lactobacillus Casei Lactate Dehydrogenase
pdb|3VKU|D Chain D, Penta Mutant Of Lactobacillus Casei Lactate Dehydrogenase
pdb|3VKU|E Chain E, Penta Mutant Of Lactobacillus Casei Lactate Dehydrogenase
pdb|3VKU|F Chain F, Penta Mutant Of Lactobacillus Casei Lactate Dehydrogenase
Length = 326
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 73/167 (43%), Gaps = 3/167 (1%)
Query: 143 EGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFA 202
+G A++LED+L P KI Y +DA+ ++ P+ PG R L++ N +I
Sbjct: 48 KGDAIDLEDAL-PFTSPKKIYSAEYSDAKDADLVVITAGAPQKPGETRLDLVNKNLKILK 106
Query: 203 EQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALK 262
+ + N +V NP + K + + + T LD R + +A
Sbjct: 107 SIVDPI-VDSGFNGIFLVAANPVDILTYATWKLSGFPKNRVVGSGTSLDTARFRQSIAKM 165
Query: 263 AGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEE 309
V V + I G H T+ P + +A I G+ + E +K H ++E
Sbjct: 166 VNVDARSV-HAYIMGEHGDTEFPVWSHANIGGVTIAEWVKAHPEIKE 211
>pdb|4E0B|A Chain A, 2.17 Angstrom Resolution Crystal Structure Of Malate
Dehydrogenase From Vibrio Vulnificus Cmcp6
pdb|4E0B|B Chain B, 2.17 Angstrom Resolution Crystal Structure Of Malate
Dehydrogenase From Vibrio Vulnificus Cmcp6
pdb|4E0B|C Chain C, 2.17 Angstrom Resolution Crystal Structure Of Malate
Dehydrogenase From Vibrio Vulnificus Cmcp6
pdb|4E0B|D Chain D, 2.17 Angstrom Resolution Crystal Structure Of Malate
Dehydrogenase From Vibrio Vulnificus Cmcp6
Length = 313
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 79/180 (43%), Gaps = 12/180 (6%)
Query: 144 GVAMELEDSLFPLLREVK--IGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIF 201
GVA +L S P +K G +P E A+ L+ R PG +RA L ++N I
Sbjct: 44 GVAADL--SHIPTHVSIKGYAGEDPTPALEGADVVLISAGVARKPGXDRADLFNVNAGIV 101
Query: 202 AEQGKALNAVASRNVKVIVVGNPCNTNALIC---LKNAPSIPAKNFHALTRLDENRAKCQ 258
+ + AV N + ++ NP NT I LK A + +T LD R++
Sbjct: 102 KSLAERI-AVVCPNACIGIITNPVNTTVPIAAEVLKKAGVYDKRKLFGVTTLDVIRSETF 160
Query: 259 LALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPV--KEIIKDHKWLEEGFTETIQ 316
+A G +V I G+ T +P L +++ G+ +EI K ++ TE ++
Sbjct: 161 VAELKGQDPGEVRVPVIGGHSGVTILP--LLSQVEGVEFSDEEIAALTKRIQNAGTEVVE 218
>pdb|2V6B|A Chain A, Crystal Structure Of Lactate Dehydrogenase From
Deinococcus Radiodurans (Apo Form)
pdb|2V6B|B Chain B, Crystal Structure Of Lactate Dehydrogenase From
Deinococcus Radiodurans (Apo Form)
pdb|2V6B|C Chain C, Crystal Structure Of Lactate Dehydrogenase From
Deinococcus Radiodurans (Apo Form)
pdb|2V6B|D Chain D, Crystal Structure Of Lactate Dehydrogenase From
Deinococcus Radiodurans (Apo Form)
Length = 304
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 63/148 (42%), Gaps = 4/148 (2%)
Query: 155 PLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASR 214
P+ ++ + DA+ +L + PG R LL+ N IF E + A
Sbjct: 50 PVSHGTRVWHGGHSELADAQVVILTAGANQKPGESRLDLLEKNADIFRELVPQITRAAPD 109
Query: 215 NVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMT 274
V ++V NP + + + AP P + T LD R + +A AGV
Sbjct: 110 AV-LLVTSNPVDLLTDLATQLAPGQPV--IGSGTVLDSARFRHLMAQHAGVDGTHAHGY- 165
Query: 275 IWGNHSTTQVPDFLNARINGLPVKEIIK 302
+ G H ++V + +A + G+PV + ++
Sbjct: 166 VLGEHGDSEVLAWSSAMVAGMPVADFMQ 193
>pdb|1LLC|A Chain A, Structure Determination Of The Allosteric L-Lactate
Dehydrogenase From Lactobacillus Casei At 3.0 Angstroms
Resolution
Length = 325
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 73/167 (43%), Gaps = 3/167 (1%)
Query: 143 EGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFA 202
+G A++L ++L P KI Y +DA+ ++ P+ PG R L++ N +I
Sbjct: 47 KGDAIDLSNAL-PFTSPKKIYSAEYSDAKDADLVVITAGAPKQPGETRLDLVNKNLKILK 105
Query: 203 EQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALK 262
+ + N+ +V NP + K + + + T LD R + +A
Sbjct: 106 SIVDPI-VDSGFNLIFLVAANPVDILTYATWKLSGFPKNRVVGSGTSLDTARFRQSIAEM 164
Query: 263 AGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEE 309
V V + I G H T+ P + +A I G+ + E +K H ++E
Sbjct: 165 VNVDARSV-HAYIMGEHGDTEFPVWSHANIGGVTIAEWVKAHPEIKE 210
>pdb|3PQD|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
pdb|3PQD|B Chain B, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
pdb|3PQD|C Chain C, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
pdb|3PQD|D Chain D, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
pdb|3PQD|E Chain E, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
pdb|3PQD|F Chain F, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
pdb|3PQD|G Chain G, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
pdb|3PQD|H Chain H, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
Length = 326
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/227 (23%), Positives = 95/227 (41%), Gaps = 12/227 (5%)
Query: 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLF 154
K VN AG + + F L +Q I +L+ + + + G M+L
Sbjct: 3 KHVNKVALIGAGFVGSSYAFALI-------NQGITDELVVIDVNKEKAMGDVMDLNHGKA 55
Query: 155 PLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASR 214
+ VK YE +DA+ + + PG R L++ N +IF +G +AS
Sbjct: 56 FAPQPVKTSYGTYEDCKDADIVCICAGANQKPGETRLELVEKNLKIF--KGIVSEVMASG 113
Query: 215 NVKVIVVG-NPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNM 273
+ +V NP + K + + + T LD R + L+ G V +
Sbjct: 114 FDGIFLVATNPVDILTYATWKFSGLPKERVIGSGTTLDSARFRFMLSEYFGAAPQNV-HA 172
Query: 274 TIWGNHSTTQVPDFLNARINGLPVKEII-KDHKWLEEGFTETIQKVR 319
I G H T++P + +A + G+PV E++ K+ + +E + + V+
Sbjct: 173 HIIGEHGDTELPVWSHANVGGVPVSELVEKNDAYKQEELDQIVDDVK 219
>pdb|2E37|A Chain A, Structure Of Tt0471 Protein From Thermus Thermophilus
pdb|2E37|B Chain B, Structure Of Tt0471 Protein From Thermus Thermophilus
pdb|2E37|C Chain C, Structure Of Tt0471 Protein From Thermus Thermophilus
pdb|2E37|D Chain D, Structure Of Tt0471 Protein From Thermus Thermophilus
pdb|2E37|E Chain E, Structure Of Tt0471 Protein From Thermus Thermophilus
pdb|2E37|F Chain F, Structure Of Tt0471 Protein From Thermus Thermophilus
pdb|2E37|G Chain G, Structure Of Tt0471 Protein From Thermus Thermophilus
pdb|2E37|H Chain H, Structure Of Tt0471 Protein From Thermus Thermophilus
Length = 310
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 62/145 (42%), Gaps = 2/145 (1%)
Query: 155 PLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASR 214
P V + Y E A +L + PG R LLD N Q+FA+ + A
Sbjct: 50 PFAHPVWVRAGSYGDLEGARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPE 109
Query: 215 NVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMT 274
V ++V NP + + + + P + + T LD R + LA V V +
Sbjct: 110 AV-LLVATNPVDVXTQVAYRLSGLPPGRVVGSGTILDTARFRALLAEYLRVAPQSV-HAY 167
Query: 275 IWGNHSTTQVPDFLNARINGLPVKE 299
+ G H ++V + +A++ G+P+ E
Sbjct: 168 VLGEHGDSEVLVWSSAQVGGVPLLE 192
>pdb|3PQE|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis With H171c Mutation
pdb|3PQE|B Chain B, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis With H171c Mutation
pdb|3PQE|C Chain C, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis With H171c Mutation
pdb|3PQE|D Chain D, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis With H171c Mutation
pdb|3PQF|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Mutation H171c Complexed With Nad+
pdb|3PQF|B Chain B, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Mutation H171c Complexed With Nad+
pdb|3PQF|C Chain C, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Mutation H171c Complexed With Nad+
pdb|3PQF|D Chain D, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Mutation H171c Complexed With Nad+
Length = 326
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/227 (23%), Positives = 94/227 (41%), Gaps = 12/227 (5%)
Query: 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLF 154
K VN AG + + F L +Q I +L+ + + + G M+L
Sbjct: 3 KHVNKVALIGAGFVGSSYAFALI-------NQGITDELVVIDVNKEKAMGDVMDLNHGKA 55
Query: 155 PLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASR 214
+ VK YE +DA+ + + PG R L++ N +IF +G +AS
Sbjct: 56 FAPQPVKTSYGTYEDCKDADIVCICAGANQKPGETRLELVEKNLKIF--KGIVSEVMASG 113
Query: 215 NVKVIVVG-NPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNM 273
+ +V NP + K + + + T LD R + L+ G V
Sbjct: 114 FDGIFLVATNPVDILTYATWKFSGLPKERVIGSGTTLDSARFRFMLSEYFGAAPQNVCAH 173
Query: 274 TIWGNHSTTQVPDFLNARINGLPVKEII-KDHKWLEEGFTETIQKVR 319
I G H T++P + +A + G+PV E++ K+ + +E + + V+
Sbjct: 174 II-GEHGDTELPVWSHANVGGVPVSELVEKNDAYKQEELDQIVDDVK 219
>pdb|2FM3|A Chain A, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum Complexed With Substrate (Pyruvic
Acid) And Cofactor (B- Nicotinamide Adenine
Dinucleotide)
pdb|2FM3|B Chain B, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum Complexed With Substrate (Pyruvic
Acid) And Cofactor (B- Nicotinamide Adenine
Dinucleotide)
pdb|2FN7|A Chain A, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum Complexed With Substrate (Lactic
Acid) And Cofactor (B- Nicotinamide Adenine
Dinucleotide)
pdb|2FN7|B Chain B, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum Complexed With Substrate (Lactic
Acid) And Cofactor (B- Nicotinamide Adenine
Dinucleotide)
pdb|2FNZ|A Chain A, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum Complexed With Cofactor
(B-Nicotinamide Adenine Dinucleotide) And Inhibitor
(Oxamic Acid)
pdb|2FNZ|B Chain B, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum Complexed With Cofactor
(B-Nicotinamide Adenine Dinucleotide) And Inhibitor
(Oxamic Acid)
pdb|2FRM|A Chain A, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum
pdb|2FRM|B Chain B, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum
pdb|2FRM|C Chain C, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum
pdb|2FRM|D Chain D, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum
Length = 321
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/191 (22%), Positives = 75/191 (39%), Gaps = 27/191 (14%)
Query: 143 EGVAMELEDSLFPLLREVK-IGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIF 201
+G A+++ S+ K IG N Y ++ ++ + P P +R+ LL N +I
Sbjct: 42 QGKALDITHSMVMFGSTSKVIGTNDYADISGSDVVIITASIPGRPKDDRSELLFGNARI- 100
Query: 202 AEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRL----------- 250
L++VA V C +IC+ N + +F ++ L
Sbjct: 101 ------LDSVAEG------VKKYCPNAFVICITNPLDVMVSHFQKVSGLPHNKVCGMAGV 148
Query: 251 -DENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEE 309
D +R + +A GV VS + G H VP + + G+P+ IK +E
Sbjct: 149 LDSSRFRTFIAQHFGVNASDVS-ANVIGGHGDGMVPATSSVSVGGVPLSSFIKQGLITQE 207
Query: 310 GFTETIQKVRL 320
E + R+
Sbjct: 208 QIDEIVCHTRI 218
>pdb|1Y6J|A Chain A, L-Lactate Dehydrogenase From Clostridium Thermocellum
Cth-1135
Length = 318
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 72/174 (41%), Gaps = 6/174 (3%)
Query: 144 GVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAE 203
G AM++ L P + ++ + Y +D + ++ R PG R L N I E
Sbjct: 47 GEAMDINHGL-PFMGQMSLYAGDYSDVKDCDVIVVTAGANRKPGETRLDLAKKNVMIAKE 105
Query: 204 QGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKA 263
+ + + V ++VV NP + + K + K + T LD R + L+ K
Sbjct: 106 VTQNIMKYYNHGV-ILVVSNPVDIITYMIQKWSGLPVGKVIGSGTVLDSIRFRYLLSEKL 164
Query: 264 GVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQK 317
GV V I G H +Q+P + I G + E I D K FTE +K
Sbjct: 165 GVDVKNVHGYII-GEHGDSQLPLWSCTHIAGKNINEYIDDPKC---NFTEEDKK 214
>pdb|4A73|A Chain A, Single Point Mutant Of Thermus Thermophilus Lactate
Dehydrogenase
pdb|4A73|B Chain B, Single Point Mutant Of Thermus Thermophilus Lactate
Dehydrogenase
pdb|4A73|C Chain C, Single Point Mutant Of Thermus Thermophilus Lactate
Dehydrogenase
pdb|4A73|D Chain D, Single Point Mutant Of Thermus Thermophilus Lactate
Dehydrogenase
Length = 310
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 62/145 (42%), Gaps = 2/145 (1%)
Query: 155 PLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASR 214
P V + Y E A +L + PG R LLD N Q+FA+ + A
Sbjct: 50 PFAHPVWVRAGSYGDLEGARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPE 109
Query: 215 NVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMT 274
V ++V NP + + + + P + + T LD R + LA V V +
Sbjct: 110 AV-LLVATNPVDVMTQVAYRLSGLPPGRVVGSGTILDTARFRALLAEYLRVAPQSV-HAY 167
Query: 275 IWGNHSTTQVPDFLNARINGLPVKE 299
+ G H ++V + +A++ G+P+ E
Sbjct: 168 VLGEHGDSEVLVWSSAQVGGVPLLE 192
>pdb|2V6M|A Chain A, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Apo Form)
pdb|2V6M|B Chain B, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Apo Form)
pdb|2V6M|C Chain C, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Apo Form)
pdb|2V6M|D Chain D, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Apo Form)
pdb|2V7P|A Chain A, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Holo Form)
pdb|2V7P|B Chain B, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Holo Form)
pdb|2V7P|C Chain C, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Holo Form)
pdb|2V7P|D Chain D, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Holo Form)
Length = 310
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 62/145 (42%), Gaps = 2/145 (1%)
Query: 155 PLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASR 214
P V + Y E A +L + PG R LLD N Q+FA+ + A
Sbjct: 50 PFAHPVWVRAGSYGDLEGARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPE 109
Query: 215 NVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMT 274
V ++V NP + + + + P + + T LD R + LA V V +
Sbjct: 110 AV-LLVATNPVDVMTQVAYRLSGLPPGRVVGSGTILDTARFRALLAEYLRVAPQSV-HAY 167
Query: 275 IWGNHSTTQVPDFLNARINGLPVKE 299
+ G H ++V + +A++ G+P+ E
Sbjct: 168 VLGEHGDSEVLVWSSAQVGGVPLLE 192
>pdb|1LLD|A Chain A, Molecular Basis Of Allosteric Activation Of Bacterial
L-Lactate Dehydrogenase
pdb|1LLD|B Chain B, Molecular Basis Of Allosteric Activation Of Bacterial
L-Lactate Dehydrogenase
pdb|1LTH|T Chain T, T And R States In The Crystals Of Bacterial L-Lactate
Dehydrogenase Reveal The Mechanism For Allosteric
Control
pdb|1LTH|R Chain R, T And R States In The Crystals Of Bacterial L-Lactate
Dehydrogenase Reveal The Mechanism For Allosteric
Control
Length = 319
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 55/206 (26%), Positives = 91/206 (44%), Gaps = 12/206 (5%)
Query: 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLF 154
K +AV GA G + + L F A G + I L+ + ER ++A E + M+ S +
Sbjct: 6 KPTKLAVIGA-GAVGSTLAFAAAQ---RGIAREIVLEDIAKER-VEA-EVLDMQHGSSFY 59
Query: 155 PLLREVKI-GINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVAS 213
P V I G + E+ DA+ ++ + PG R L+ I L VA
Sbjct: 60 PT---VSIDGSDDPEICRDADMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKVAP 116
Query: 214 RNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNM 273
N +++ NP + + K + F + T LD R + +A + GV V +
Sbjct: 117 -NAIYMLITNPVDIATHVAQKLTGLPENQIFGSGTNLDSARLRFLIAQQTGVNVKNV-HA 174
Query: 274 TIWGNHSTTQVPDFLNARINGLPVKE 299
I G H ++VP + +A I G+P+ +
Sbjct: 175 YIAGEHGDSEVPLWESATIGGVPMSD 200
>pdb|1SOV|A Chain A, Toxoplasma Gondii Bradyzoite-specific Ldh (ldh2) Apo Form
pdb|1SOV|B Chain B, Toxoplasma Gondii Bradyzoite-specific Ldh (ldh2) Apo Form
pdb|1SOW|A Chain A, T. Gondii Bradyzoite-Specific Ldh (Ldh2) In Complex With
Nad And Oxalate
pdb|1SOW|B Chain B, T. Gondii Bradyzoite-Specific Ldh (Ldh2) In Complex With
Nad And Oxalate
Length = 328
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/180 (22%), Positives = 71/180 (39%), Gaps = 12/180 (6%)
Query: 149 LEDSLFPLLREVKIGI---NPYELFEDAEWALLIGAKPRGPGME-----RAGLLDINGQI 200
L+DS + + + + N YE ++ ++ + PG R LL N +I
Sbjct: 50 LDDSQATSIADTNVSVTSANQYEKIAGSDVVIITAGLTKVPGKSDKEWSRNDLLPFNAKI 109
Query: 201 FAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTR-LDENRAKCQL 259
E + + VIVV NP + + C A +P + LD R + +
Sbjct: 110 IREVAQGVKKYCPLAF-VIVVTNPLDC-MVKCFHEASGLPKNMVCGMANVLDSARFRRFI 167
Query: 260 ALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVR 319
A + + + T+ G H +P +NG P++E IK K E E +++ +
Sbjct: 168 ADQLEISPRDI-QATVIGTHGDHMLPLARYVTVNGFPLREFIKKGKMTEAKLAEIVERTK 226
>pdb|3CZM|A Chain A, T. Gondii Bradyzoite-Specific Ldh (Ldh2) In Complex With
Nad And Oxq
pdb|3CZM|B Chain B, T. Gondii Bradyzoite-Specific Ldh (Ldh2) In Complex With
Nad And Oxq
Length = 326
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/180 (22%), Positives = 71/180 (39%), Gaps = 12/180 (6%)
Query: 149 LEDSLFPLLREVKIGI---NPYELFEDAEWALLIGAKPRGPGME-----RAGLLDINGQI 200
L+DS + + + + N YE ++ ++ + PG R LL N +I
Sbjct: 50 LDDSQATSIADTNVSVTSANQYEKIAGSDVVIITAGLTKVPGKSDKEWSRNDLLPFNAKI 109
Query: 201 FAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTR-LDENRAKCQL 259
E + + VIVV NP + + C A +P + LD R + +
Sbjct: 110 IREVAQGVKKYCPLAF-VIVVTNPLDC-MVKCFHEASGLPKNMVCGMANVLDSARFRRFI 167
Query: 260 ALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVR 319
A + + + T+ G H +P +NG P++E IK K E E +++ +
Sbjct: 168 ADQLEISPRDI-QATVIGTHGDHMLPLARYVTVNGFPLREFIKKGKMTEAKLAEIVERTK 226
>pdb|2ZQY|A Chain A, T-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQY|B Chain B, T-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQY|C Chain C, T-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQY|D Chain D, T-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQZ|A Chain A, R-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQZ|B Chain B, R-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQZ|C Chain C, R-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQZ|D Chain D, R-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQZ|E Chain E, R-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQZ|F Chain F, R-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|3VKV|A Chain A, Complex Structure Of Lactobacillus Casei Lactate
Dehydrogenase With Fructose-1,6-Bisphosphate
pdb|3VKV|B Chain B, Complex Structure Of Lactobacillus Casei Lactate
Dehydrogenase With Fructose-1,6-Bisphosphate
pdb|3VKV|C Chain C, Complex Structure Of Lactobacillus Casei Lactate
Dehydrogenase With Fructose-1,6-Bisphosphate
pdb|3VKV|D Chain D, Complex Structure Of Lactobacillus Casei Lactate
Dehydrogenase With Fructose-1,6-Bisphosphate
pdb|3VKV|E Chain E, Complex Structure Of Lactobacillus Casei Lactate
Dehydrogenase With Fructose-1,6-Bisphosphate
pdb|3VKV|F Chain F, Complex Structure Of Lactobacillus Casei Lactate
Dehydrogenase With Fructose-1,6-Bisphosphate
Length = 326
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 72/167 (43%), Gaps = 3/167 (1%)
Query: 143 EGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFA 202
+G A++L ++L P KI Y +DA+ ++ P+ PG R L++ N +I
Sbjct: 48 KGDAIDLSNAL-PFTSPKKIYSAEYSDAKDADLVVITAGAPQKPGETRLDLVNKNLKILK 106
Query: 203 EQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALK 262
+ + N +V NP + K + + + T LD R + +A
Sbjct: 107 SIVDPI-VDSGFNGIFLVAANPVDILTYATWKLSGFPKNRVVGSGTSLDTARFRQSIAEM 165
Query: 263 AGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEE 309
V V + I G H T+ P + +A I G+ + E +K H ++E
Sbjct: 166 VNVDARSV-HAYIMGEHGDTEFPVWSHANIGGVTIAEWVKAHPEIKE 211
>pdb|2XXB|A Chain A, Penta-Mutant Of Thermus Thermophilus Lactate
Dehydrogenase, Complex With Amp
pdb|2XXB|B Chain B, Penta-Mutant Of Thermus Thermophilus Lactate
Dehydrogenase, Complex With Amp
pdb|2XXJ|A Chain A, Penta Mutant Of Lactate Dehydrogenase From Thermus
Thermophilus, Ternary Complex
pdb|2XXJ|B Chain B, Penta Mutant Of Lactate Dehydrogenase From Thermus
Thermophilus, Ternary Complex
pdb|2XXJ|C Chain C, Penta Mutant Of Lactate Dehydrogenase From Thermus
Thermophilus, Ternary Complex
pdb|2XXJ|D Chain D, Penta Mutant Of Lactate Dehydrogenase From Thermus
Thermophilus, Ternary Complex
pdb|3ZZN|A Chain A, 5-Mutant (R79w, R151a, E279a, E299a,E313a)
Lactate-Dehydrogenase From Thermus Thermophillus
pdb|3ZZN|B Chain B, 5-Mutant (R79w, R151a, E279a, E299a,E313a)
Lactate-Dehydrogenase From Thermus Thermophillus
pdb|3ZZN|C Chain C, 5-Mutant (R79w, R151a, E279a, E299a,E313a)
Lactate-Dehydrogenase From Thermus Thermophillus
pdb|3ZZN|D Chain D, 5-Mutant (R79w, R151a, E279a, E299a,E313a)
Lactate-Dehydrogenase From Thermus Thermophillus
Length = 310
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 62/147 (42%), Gaps = 6/147 (4%)
Query: 155 PLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASR 214
P V + Y E A +L + PG R LLD N Q+FA+ + A
Sbjct: 50 PFAHPVWVWAGSYGDLEGARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPE 109
Query: 215 NVKVIVVGNPCN--TNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSN 272
V ++V NP + T L P P + + T LD R + LA V V +
Sbjct: 110 AV-LLVATNPVDVMTQVAYALSGLP--PGRVVGSGTILDTARFRALLAEYLRVAPQSV-H 165
Query: 273 MTIWGNHSTTQVPDFLNARINGLPVKE 299
+ G H ++V + +A++ G+P+ E
Sbjct: 166 AYVLGEHGDSEVLVWSSAQVGGVPLLE 192
>pdb|2EWD|A Chain A, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum Complexed With Substrate (Pyruvic
Acid) And Cofactor Analog (3-Acetylpyridine Adenine
Dinucleotide).
pdb|2EWD|B Chain B, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum Complexed With Substrate (Pyruvic
Acid) And Cofactor Analog (3-Acetylpyridine Adenine
Dinucleotide)
Length = 317
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 42/191 (21%), Positives = 75/191 (39%), Gaps = 27/191 (14%)
Query: 143 EGVAMELEDSLFPLLREVK-IGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIF 201
+G A+++ S+ K IG + Y ++ ++ + P P +R+ LL N +I
Sbjct: 42 QGKALDITHSMVMFGSTSKVIGTDDYADISGSDVVIITASIPGRPKDDRSELLFGNARI- 100
Query: 202 AEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRL----------- 250
L++VA V C +IC+ N + +F ++ L
Sbjct: 101 ------LDSVAEG------VKKYCPNAFVICITNPLDVMVSHFQKVSGLPHNKVCGMAGV 148
Query: 251 -DENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEE 309
D +R + +A GV VS + G H VP + + G+P+ IK +E
Sbjct: 149 LDSSRFRTFIAQHFGVNASDVS-ANVIGGHGDGMVPATSSVSVGGVPLSSFIKQGLITQE 207
Query: 310 GFTETIQKVRL 320
E + R+
Sbjct: 208 QIDEIVCHTRI 218
>pdb|1PZG|A Chain A, T.Gondii Ldh1 Complexed With Apad And Sulfate At 1.6
Angstroms
pdb|1PZG|B Chain B, T.Gondii Ldh1 Complexed With Apad And Sulfate At 1.6
Angstroms
pdb|1PZG|C Chain C, T.Gondii Ldh1 Complexed With Apad And Sulfate At 1.6
Angstroms
pdb|1PZG|D Chain D, T.Gondii Ldh1 Complexed With Apad And Sulfate At 1.6
Angstroms
Length = 331
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 59/150 (39%), Gaps = 17/150 (11%)
Query: 172 DAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALI 231
D+EW+ R LL N +I E G+ + + +IVV NP + +
Sbjct: 96 DSEWS-------------RNDLLPFNSKIIREIGQNIKKYCPKTF-IIVVTNPLDCMVKV 141
Query: 232 CLKNAPSIPAKNFHALT-RLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNA 290
+ A +P + LD R + +A V V T+ G H VP
Sbjct: 142 -MXEASGVPTNMICGMACMLDSGRFRRYVADALSVSPRDV-QATVIGTHGDCMVPLVRYI 199
Query: 291 RINGLPVKEIIKDHKWLEEGFTETIQKVRL 320
+NG P+++ IKD E+ E + ++
Sbjct: 200 TVNGYPIQKFIKDGVVTEKQLEEIAEHTKV 229
>pdb|3OM9|A Chain A, T. Gondii Bradyzoite-Specific Ldh (Ldh1) In Complex With
Nad And Oxq
pdb|3OM9|B Chain B, T. Gondii Bradyzoite-Specific Ldh (Ldh1) In Complex With
Nad And Oxq
pdb|3OM9|C Chain C, T. Gondii Bradyzoite-Specific Ldh (Ldh1) In Complex With
Nad And Oxq
pdb|3OM9|D Chain D, T. Gondii Bradyzoite-Specific Ldh (Ldh1) In Complex With
Nad And Oxq
Length = 329
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 59/150 (39%), Gaps = 17/150 (11%)
Query: 172 DAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALI 231
D+EW+ R LL N +I E G+ + + +IVV NP + +
Sbjct: 94 DSEWS-------------RNDLLPFNSKIIREIGQNIKKYCPKTF-IIVVTNPLDCMVKV 139
Query: 232 CLKNAPSIPAKNFHALT-RLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNA 290
+ A +P + LD R + +A V V T+ G H VP
Sbjct: 140 -MCEASGVPTNMICGMACMLDSGRFRRYVADALSVSPRDV-QATVIGTHGDCMVPLVRYI 197
Query: 291 RINGLPVKEIIKDHKWLEEGFTETIQKVRL 320
+NG P+++ IKD E+ E + ++
Sbjct: 198 TVNGYPIQKFIKDGVVTEKQLEEIAEHTKV 227
>pdb|1PZE|A Chain A, T.gondii Ldh1 Apo Form
pdb|1PZF|A Chain A, T.gondii Ldh1 Ternary Complex With Apad+ And Oxalate
pdb|1PZF|B Chain B, T.gondii Ldh1 Ternary Complex With Apad+ And Oxalate
pdb|1PZF|C Chain C, T.gondii Ldh1 Ternary Complex With Apad+ And Oxalate
pdb|1PZF|D Chain D, T.gondii Ldh1 Ternary Complex With Apad+ And Oxalate
pdb|1PZH|A Chain A, T.Gondii Ldh1 Ternary Complex With Nad And Oxalate
pdb|1PZH|B Chain B, T.Gondii Ldh1 Ternary Complex With Nad And Oxalate
pdb|1PZH|C Chain C, T.Gondii Ldh1 Ternary Complex With Nad And Oxalate
pdb|1PZH|D Chain D, T.Gondii Ldh1 Ternary Complex With Nad And Oxalate
Length = 331
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 59/150 (39%), Gaps = 17/150 (11%)
Query: 172 DAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALI 231
D+EW+ R LL N +I E G+ + + +IVV NP + +
Sbjct: 96 DSEWS-------------RNDLLPFNSKIIREIGQNIKKYCPKTF-IIVVTNPLDCMVKV 141
Query: 232 CLKNAPSIPAKNFHALT-RLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNA 290
+ A +P + LD R + +A V V T+ G H VP
Sbjct: 142 -MCEASGVPTNMICGMACMLDSGRFRRYVADALSVSPRDV-QATVIGTHGDCMVPLVRYI 199
Query: 291 RINGLPVKEIIKDHKWLEEGFTETIQKVRL 320
+NG P+++ IKD E+ E + ++
Sbjct: 200 TVNGYPIQKFIKDGVVTEKQLEEIAEHTKV 229
>pdb|1EZ4|A Chain A, Crystal Structure Of Non-Allosteric L-Lactate
Dehydrogenase From Lactobacillus Pentosus At 2.3
Angstrom Resolution
pdb|1EZ4|B Chain B, Crystal Structure Of Non-Allosteric L-Lactate
Dehydrogenase From Lactobacillus Pentosus At 2.3
Angstrom Resolution
pdb|1EZ4|C Chain C, Crystal Structure Of Non-Allosteric L-Lactate
Dehydrogenase From Lactobacillus Pentosus At 2.3
Angstrom Resolution
pdb|1EZ4|D Chain D, Crystal Structure Of Non-Allosteric L-Lactate
Dehydrogenase From Lactobacillus Pentosus At 2.3
Angstrom Resolution
Length = 318
Score = 35.8 bits (81), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 75/178 (42%), Gaps = 5/178 (2%)
Query: 143 EGVAMELEDS-LFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIF 201
+G A++LED+ F +++ G Y +DA+ ++ P+ PG R L++ N I
Sbjct: 44 KGDALDLEDAQAFTAPKKIYSG--EYSDCKDADLVVITAGAPQKPGESRLDLVNKNLNIL 101
Query: 202 AEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLAL 261
+ K + + +V NP + K + + + T LD +R + L
Sbjct: 102 SSIVKPVVDSGFDGI-FLVAANPVDILTYATWKFSGFPKERVIGSGTSLDSSRLRVALGK 160
Query: 262 KAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVR 319
+ V V + I G H ++ + A I PV+++ K+ ++ + VR
Sbjct: 161 QFNVDPRSV-DAYIMGEHGDSEFAAYSTATIGTRPVRDVAKEQGVSDDDLAKLEDGVR 217
>pdb|2PWZ|A Chain A, Crystal Structure Of The Apo Form Of E.Coli Malate
Dehydrogenase
pdb|2PWZ|C Chain C, Crystal Structure Of The Apo Form Of E.Coli Malate
Dehydrogenase
pdb|2PWZ|E Chain E, Crystal Structure Of The Apo Form Of E.Coli Malate
Dehydrogenase
pdb|2PWZ|G Chain G, Crystal Structure Of The Apo Form Of E.Coli Malate
Dehydrogenase
pdb|3HHP|A Chain A, Malate Dehydrogenase Open Conformation
pdb|3HHP|B Chain B, Malate Dehydrogenase Open Conformation
pdb|3HHP|C Chain C, Malate Dehydrogenase Open Conformation
pdb|3HHP|D Chain D, Malate Dehydrogenase Open Conformation
Length = 312
Score = 35.0 bits (79), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 62/233 (26%), Positives = 97/233 (41%), Gaps = 31/233 (13%)
Query: 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALE----GVAMELEDS 152
+ +AV GAAG I L +L P GSE SL + GVA++L S
Sbjct: 1 MKVAVLGAAGGIGQALAL------LLKTQLPS-----GSELSLYDIAPVTPGVAVDL--S 47
Query: 153 LFPLLREVK--IGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNA 210
P ++K G + E A+ L+ R PGM+R+ L ++N I +
Sbjct: 48 HIPTAVKIKGFSGEDATPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVK---NLVQQ 104
Query: 211 VASRNVK--VIVVGNPCNTNALIC---LKNAPSIPAKNFHALTRLDENRAKCQLALKAGV 265
VA K + ++ NP NT I LK A +T LD R+ +A G
Sbjct: 105 VAKTCPKACIGIITNPVNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIIRSNTFVAELKGK 164
Query: 266 FYDKVSNMTIWGNHSTTQVPDFLNARINGLPV--KEIIKDHKWLEEGFTETIQ 316
+V I G+ T +P L +++ G+ +E+ K ++ TE ++
Sbjct: 165 QPGEVEVPVIGGHSGVTILP--LLSQVPGVSFTEQEVADLTKRIQNAGTEVVE 215
>pdb|1EMD|A Chain A, Crystal Structure Of A Ternary Complex Of Escherichia Coli
Malate Dehydrogenase, Citrate And Nad At 1.9 Angstroms
Resolution
pdb|2CMD|A Chain A, The Crystal Structure Of E.Coli Malate Dehydrogenase: A
Complex Of The Apoenzyme And Citrate At 1.87 Angstroms
Resolution
Length = 312
Score = 34.7 bits (78), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 62/233 (26%), Positives = 97/233 (41%), Gaps = 31/233 (13%)
Query: 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALE----GVAMELEDS 152
+ +AV GAAG I L +L P GSE SL + GVA++L S
Sbjct: 1 MKVAVLGAAGGIGQALAL------LLKTQLPS-----GSELSLYDIAPVTPGVAVDL--S 47
Query: 153 LFPLLREVK--IGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNA 210
P ++K G + E A+ L+ R PGM+R+ L ++N I +
Sbjct: 48 HIPTAVKIKGFSGEDATPALEGADVVLISAGVRRKPGMDRSDLFNVNAGIVK---NLVQQ 104
Query: 211 VASRNVK--VIVVGNPCNTNALIC---LKNAPSIPAKNFHALTRLDENRAKCQLALKAGV 265
VA K + ++ NP NT I LK A +T LD R+ +A G
Sbjct: 105 VAKTCPKACIGIITNPVNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIIRSNTFVAELKGK 164
Query: 266 FYDKVSNMTIWGNHSTTQVPDFLNARINGLPV--KEIIKDHKWLEEGFTETIQ 316
+V I G+ T +P L +++ G+ +E+ K ++ TE ++
Sbjct: 165 QPGEVEVPVIGGHSGVTILP--LLSQVPGVSFTEQEVADLTKRIQNAGTEVVE 215
>pdb|2X0I|A Chain A, 2.9 A Resolution Structure Of Malate Dehydrogenase From
Archaeoglobus Fulgidus In Complex With Nadh
pdb|2X0J|A Chain A, 2.8 A Resolution Structure Of Malate Dehydrogenase From
Archaeoglobus Fulgidus In Complex With Etheno-Nad
Length = 294
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 51/117 (43%), Gaps = 2/117 (1%)
Query: 144 GVAMELEDSLFPLLREVKI-GINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFA 202
G AM+L + + + KI G Y L + +E ++ R PGM R L N I
Sbjct: 40 GEAMDLAHAAAGIDKYPKIVGGADYSLLKGSEIIVVTAGLARKPGMTRLDLAHKNAGIIK 99
Query: 203 EQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQL 259
+ K + A + K++VV NP + I K + + F +LD R K +L
Sbjct: 100 DIAKKIVENAPES-KILVVTNPMDVMTYIMWKESGKPRNEVFGMGNQLDSQRLKERL 155
>pdb|3D0O|A Chain A, Crystal Structure Of Lactate Dehydrogenase From
Staphylococcus Aureus
pdb|3D0O|B Chain B, Crystal Structure Of Lactate Dehydrogenase From
Staphylococcus Aureus
pdb|3D4P|A Chain A, Crystal Structure Of Lactate Dehydrogenase From
Staphylococcus Aureus Complexed With Nad And Pyruvate
pdb|3D4P|B Chain B, Crystal Structure Of Lactate Dehydrogenase From
Staphylococcus Aureus Complexed With Nad And Pyruvate
Length = 317
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 44/195 (22%), Positives = 84/195 (43%), Gaps = 8/195 (4%)
Query: 125 DQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPR 184
+Q I +L+ + + + G M+L+ + V++ Y DA+ ++ +
Sbjct: 27 NQSIVDELVIIDLDTEKVRGDVMDLKHATPYSPTTVRVKAGEYSDCHDADLVVICAGAAQ 86
Query: 185 GPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG-NPCNTNALICLKNAPSIPAKN 243
PG R L+ N +IF + +AS+ + +V NP + A K + +
Sbjct: 87 KPGETRLDLVSKNLKIF--KSIVGEVMASKFDGIFLVATNPVDILAYATWKFSGLPKERV 144
Query: 244 FHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKD 303
+ T LD R + L+ V V + I G H T++P + +A I G P+K +++
Sbjct: 145 IGSGTILDSARFRLLLSEAFDVAPRSV-DAQIIGEHGDTELPVWSHANIAGQPLKTLLEQ 203
Query: 304 H----KWLEEGFTET 314
+E+ F +T
Sbjct: 204 RPEGKAQIEQIFVQT 218
>pdb|3H3J|A Chain A, Crystal Structure Of Lactate Dehydrogenase Mutant (A85r)
Fro Staphylococcus Aureus Complexed With Nad And
Pyruvate
pdb|3H3J|B Chain B, Crystal Structure Of Lactate Dehydrogenase Mutant (A85r)
Fro Staphylococcus Aureus Complexed With Nad And
Pyruvate
Length = 317
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 44/195 (22%), Positives = 84/195 (43%), Gaps = 8/195 (4%)
Query: 125 DQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPR 184
+Q I +L+ + + + G M+L+ + V++ Y DA+ ++ +
Sbjct: 27 NQSIVDELVIIDLDTEKVRGDVMDLKHATPYSPTTVRVKAGEYSDCHDADLVVICAGARQ 86
Query: 185 GPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG-NPCNTNALICLKNAPSIPAKN 243
PG R L+ N +IF + +AS+ + +V NP + A K + +
Sbjct: 87 KPGETRLDLVSKNLKIF--KSIVGEVMASKFDGIFLVATNPVDILAYATWKFSGLPKERV 144
Query: 244 FHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKD 303
+ T LD R + L+ V V + I G H T++P + +A I G P+K +++
Sbjct: 145 IGSGTILDSARFRLLLSEAFDVAPRSV-DAQIIGEHGDTELPVWSHANIAGQPLKTLLEQ 203
Query: 304 H----KWLEEGFTET 314
+E+ F +T
Sbjct: 204 RPEGKAQIEQIFVQT 218
>pdb|1IB6|A Chain A, Crystal Structure Of R153c E. Coli Malate Dehydrogenase
pdb|1IB6|B Chain B, Crystal Structure Of R153c E. Coli Malate Dehydrogenase
pdb|1IB6|C Chain C, Crystal Structure Of R153c E. Coli Malate Dehydrogenase
pdb|1IB6|D Chain D, Crystal Structure Of R153c E. Coli Malate Dehydrogenase
pdb|1IE3|A Chain A, Crystal Structure Of R153c E. Coli Malate Dehydrogenase
pdb|1IE3|B Chain B, Crystal Structure Of R153c E. Coli Malate Dehydrogenase
pdb|1IE3|C Chain C, Crystal Structure Of R153c E. Coli Malate Dehydrogenase
pdb|1IE3|D Chain D, Crystal Structure Of R153c E. Coli Malate Dehydrogenase
Length = 312
Score = 31.6 bits (70), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 68/166 (40%), Gaps = 27/166 (16%)
Query: 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALE----GVAMELEDS 152
+ +AV GAAG I L +L P GSE SL + GVA++L S
Sbjct: 1 MKVAVLGAAGGIGQALAL------LLKTQLPS-----GSELSLYDIAPVTPGVAVDL--S 47
Query: 153 LFPLLREVK--IGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNA 210
P ++K G + E A+ L+ R PGM+R+ L ++N I +
Sbjct: 48 HIPTAVKIKGFSGEDATPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVK---NLVQQ 104
Query: 211 VASRNVK--VIVVGNPCNTNALIC---LKNAPSIPAKNFHALTRLD 251
VA K + ++ NP NT I LK A +T LD
Sbjct: 105 VAKTCPKACIGIITNPVNTTVAIAAEVLKKAGVYDKNKLFGVTTLD 150
>pdb|1LDN|A Chain A, Structure Of A Ternary Complex Of An Allosteric Lactate
Dehydrogenase From Bacillus Stearothermophilus At 2.5
Angstroms Resolution
pdb|1LDN|B Chain B, Structure Of A Ternary Complex Of An Allosteric Lactate
Dehydrogenase From Bacillus Stearothermophilus At 2.5
Angstroms Resolution
pdb|1LDN|C Chain C, Structure Of A Ternary Complex Of An Allosteric Lactate
Dehydrogenase From Bacillus Stearothermophilus At 2.5
Angstroms Resolution
pdb|1LDN|D Chain D, Structure Of A Ternary Complex Of An Allosteric Lactate
Dehydrogenase From Bacillus Stearothermophilus At 2.5
Angstroms Resolution
pdb|1LDN|E Chain E, Structure Of A Ternary Complex Of An Allosteric Lactate
Dehydrogenase From Bacillus Stearothermophilus At 2.5
Angstroms Resolution
pdb|1LDN|F Chain F, Structure Of A Ternary Complex Of An Allosteric Lactate
Dehydrogenase From Bacillus Stearothermophilus At 2.5
Angstroms Resolution
pdb|1LDN|G Chain G, Structure Of A Ternary Complex Of An Allosteric Lactate
Dehydrogenase From Bacillus Stearothermophilus At 2.5
Angstroms Resolution
pdb|1LDN|H Chain H, Structure Of A Ternary Complex Of An Allosteric Lactate
Dehydrogenase From Bacillus Stearothermophilus At 2.5
Angstroms Resolution
Length = 316
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 36/159 (22%), Positives = 65/159 (40%), Gaps = 2/159 (1%)
Query: 144 GVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAE 203
G AM+ + V I Y+ DA+ ++ + PG R L+D N IF
Sbjct: 46 GDAMDFNHGKVFAPKPVDIWHGDYDDCRDADLVVICAGANQKPGETRLDLVDKNIAIFRS 105
Query: 204 QGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKA 263
+++ A + + +V NP + K + + + T LD R + L
Sbjct: 106 IVESVMASGFQGL-FLVATNPVDILTYATWKFSGLPHERVIGSGTILDTARFRFLLGEYF 164
Query: 264 GVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIK 302
V V I G H T++P + A I +P++++++
Sbjct: 165 SVAPQNVHAYII-GEHGDTELPVWSQAYIGVMPIRKLVE 202
>pdb|1LDB|A Chain A, Structure Determination And Refinement Of Bacillus
Stearothermophilus Lactate Dehydrogenase
pdb|1LDB|B Chain B, Structure Determination And Refinement Of Bacillus
Stearothermophilus Lactate Dehydrogenase
pdb|1LDB|C Chain C, Structure Determination And Refinement Of Bacillus
Stearothermophilus Lactate Dehydrogenase
pdb|1LDB|D Chain D, Structure Determination And Refinement Of Bacillus
Stearothermophilus Lactate Dehydrogenase
pdb|2LDB|A Chain A, Structure Determination And Refinement Of Bacillus
Stearothermophilus Lactate Dehydrogenase
pdb|2LDB|B Chain B, Structure Determination And Refinement Of Bacillus
Stearothermophilus Lactate Dehydrogenase
pdb|2LDB|C Chain C, Structure Determination And Refinement Of Bacillus
Stearothermophilus Lactate Dehydrogenase
pdb|2LDB|D Chain D, Structure Determination And Refinement Of Bacillus
Stearothermophilus Lactate Dehydrogenase
Length = 317
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 36/159 (22%), Positives = 65/159 (40%), Gaps = 2/159 (1%)
Query: 144 GVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAE 203
G AM+ + V I Y+ DA+ ++ + PG R L+D N IF
Sbjct: 46 GDAMDFNHGKVFAPKPVDIWHGDYDDCRDADLVVICAGANQKPGETRLDLVDKNIAIFRS 105
Query: 204 QGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKA 263
+++ A + + +V NP + K + + + T LD R + L
Sbjct: 106 IVESVMASGFQGL-FLVATNPVDILTYATWKFSGLPHERVIGSGTILDTARFRFLLGEYF 164
Query: 264 GVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIK 302
V V I G H T++P + A I +P++++++
Sbjct: 165 SVAPQNVHAYII-GEHGDTELPVWSQAYIGVMPIRKLVE 202
>pdb|1FNN|A Chain A, Crystal Structure Of Cdc6p From Pyrobaculum Aerophilum
pdb|1FNN|B Chain B, Crystal Structure Of Cdc6p From Pyrobaculum Aerophilum
Length = 389
Score = 28.5 bits (62), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 39/92 (42%), Gaps = 9/92 (9%)
Query: 145 VAMELEDSLFPL--LREVKIGINPYELFEDAEWALLI-----GAKPRGPGMERAGLLDIN 197
+ + L + LF L +R +KI PY F DAE + I G +PR + L D+
Sbjct: 284 IGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKIVCEEYGERPRVHSQLWSYLNDLR 343
Query: 198 --GQIFAEQGKALNAVASRNVKVIVVGNPCNT 227
G + Q K V R + + P +T
Sbjct: 344 EKGIVETRQNKRGEGVRGRTTLISIGTEPLDT 375
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 28.1 bits (61), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 9/79 (11%)
Query: 212 ASRNVKVIVVGNPCNTNALICLKNA-PSIPAKNFHALTR-----LDENRAKCQLALKAGV 265
+S+ + I P +T L N S+P+K FH LT+ L++N+ + L AG+
Sbjct: 24 SSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ---TLPAGI 80
Query: 266 FYDKVSNMTIWGNHSTTQV 284
F + + T+W + Q
Sbjct: 81 FKELKNLETLWVTDNKLQA 99
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,201,067
Number of Sequences: 62578
Number of extensions: 365099
Number of successful extensions: 938
Number of sequences better than 100.0: 58
Number of HSP's better than 100.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 871
Number of HSP's gapped (non-prelim): 58
length of query: 337
length of database: 14,973,337
effective HSP length: 99
effective length of query: 238
effective length of database: 8,778,115
effective search space: 2089191370
effective search space used: 2089191370
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)