Query 019713
Match_columns 337
No_of_seqs 215 out of 1332
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 03:57:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019713.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019713hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00112 malate dehydrogenase 100.0 3.9E-82 8.5E-87 630.1 26.1 326 2-328 1-332 (444)
2 TIGR01757 Malate-DH_plant mala 100.0 1.9E-68 4.2E-73 524.8 22.9 272 55-327 2-275 (387)
3 PRK05442 malate dehydrogenase; 100.0 5.2E-55 1.1E-59 422.7 19.1 238 93-331 1-239 (326)
4 cd05295 MDH_like Malate dehydr 100.0 9.3E-55 2E-59 433.8 21.2 239 81-320 105-360 (452)
5 KOG1496 Malate dehydrogenase [ 100.0 9.2E-55 2E-59 395.9 14.5 230 93-322 1-234 (332)
6 TIGR01759 MalateDH-SF1 malate 100.0 1.1E-53 2.3E-58 413.1 19.9 236 94-330 1-237 (323)
7 COG0039 Mdh Malate/lactate deh 100.0 9.9E-54 2.1E-58 408.6 18.5 221 97-328 1-224 (313)
8 cd01338 MDH_choloroplast_like 100.0 1.7E-51 3.7E-56 397.8 19.2 236 95-331 1-237 (322)
9 cd05290 LDH_3 A subgroup of L- 100.0 2.1E-51 4.5E-56 394.8 19.3 220 98-328 1-227 (307)
10 cd00704 MDH Malate dehydrogena 100.0 1.6E-51 3.4E-56 398.2 17.7 234 97-331 1-238 (323)
11 TIGR01758 MDH_euk_cyt malate d 100.0 2.1E-51 4.6E-56 397.4 18.0 227 98-324 1-231 (324)
12 PLN02602 lactate dehydrogenase 100.0 2E-49 4.4E-54 386.8 19.7 242 72-325 12-261 (350)
13 TIGR01771 L-LDH-NAD L-lactate 100.0 1.7E-49 3.7E-54 380.4 18.4 216 101-327 1-221 (299)
14 PRK00066 ldh L-lactate dehydro 100.0 5.4E-49 1.2E-53 379.5 20.5 221 93-325 3-228 (315)
15 cd01336 MDH_cytoplasmic_cytoso 100.0 4.5E-49 9.7E-54 381.5 18.3 230 95-324 1-234 (325)
16 cd05293 LDH_1 A subgroup of L- 100.0 8.8E-49 1.9E-53 377.5 19.7 221 95-327 2-229 (312)
17 PLN00135 malate dehydrogenase 100.0 7.1E-49 1.5E-53 377.2 17.0 208 116-323 2-213 (309)
18 TIGR01756 LDH_protist lactate 100.0 8.4E-48 1.8E-52 370.5 16.3 213 113-328 2-219 (313)
19 cd05291 HicDH_like L-2-hydroxy 100.0 3.7E-47 8E-52 365.0 20.0 218 97-325 1-222 (306)
20 cd00300 LDH_like L-lactate deh 100.0 4.1E-46 8.9E-51 357.1 19.7 213 99-323 1-215 (300)
21 cd01337 MDH_glyoxysomal_mitoch 100.0 5.2E-46 1.1E-50 357.5 17.0 213 97-331 1-225 (310)
22 KOG1495 Lactate dehydrogenase 100.0 1.3E-45 2.8E-50 340.7 17.1 227 80-322 8-241 (332)
23 TIGR01772 MDH_euk_gproteo mala 100.0 7.9E-45 1.7E-49 349.7 16.1 206 98-325 1-215 (312)
24 cd05294 LDH-like_MDH_nadp A la 100.0 2.2E-44 4.9E-49 346.5 18.2 224 97-328 1-226 (309)
25 PTZ00117 malate dehydrogenase; 100.0 1.1E-43 2.3E-48 343.1 21.2 216 95-322 4-224 (319)
26 cd05292 LDH_2 A subgroup of L- 100.0 1.5E-43 3.2E-48 340.6 19.8 217 97-325 1-223 (308)
27 TIGR01763 MalateDH_bact malate 100.0 4.9E-43 1.1E-47 336.7 19.7 213 97-324 2-217 (305)
28 PTZ00082 L-lactate dehydrogena 100.0 9.7E-43 2.1E-47 336.8 21.5 221 93-325 3-233 (321)
29 PRK06223 malate dehydrogenase; 100.0 3.5E-42 7.5E-47 329.9 20.3 215 96-324 2-218 (307)
30 PTZ00325 malate dehydrogenase; 100.0 4.3E-41 9.3E-46 324.9 17.0 211 92-326 4-223 (321)
31 cd01339 LDH-like_MDH L-lactate 100.0 1.5E-40 3.3E-45 318.2 19.5 212 99-324 1-214 (300)
32 PLN00106 malate dehydrogenase 100.0 1.9E-40 4.1E-45 320.6 17.9 208 96-325 18-234 (323)
33 PRK05086 malate dehydrogenase; 100.0 8.4E-40 1.8E-44 315.2 16.7 208 97-326 1-217 (312)
34 cd00650 LDH_MDH_like NAD-depen 100.0 1.6E-38 3.4E-43 298.8 17.7 184 99-291 1-186 (263)
35 PF00056 Ldh_1_N: lactate/mala 100.0 2.8E-33 6.1E-38 240.8 14.9 141 97-245 1-141 (141)
36 KOG1494 NAD-dependent malate d 100.0 1.2E-31 2.6E-36 249.2 12.8 217 94-330 26-258 (345)
37 cd05197 GH4_glycoside_hydrolas 100.0 2E-28 4.3E-33 244.9 17.4 221 97-332 1-260 (425)
38 PRK15076 alpha-galactosidase; 100.0 1.3E-27 2.8E-32 239.6 18.3 216 96-331 1-260 (431)
39 cd05296 GH4_P_beta_glucosidase 99.9 4E-27 8.6E-32 235.2 17.6 218 97-332 1-252 (419)
40 cd05297 GH4_alpha_glucosidase_ 99.9 1.7E-24 3.7E-29 216.8 19.3 218 97-332 1-261 (423)
41 cd05298 GH4_GlvA_pagL_like Gly 99.9 4.2E-23 9.2E-28 207.1 18.1 191 97-302 1-216 (437)
42 COG1486 CelF Alpha-galactosida 99.8 3E-20 6.4E-25 184.4 15.9 222 95-331 2-263 (442)
43 PF02056 Glyco_hydro_4: Family 99.7 1.5E-16 3.2E-21 142.5 16.0 156 98-265 1-183 (183)
44 PF02866 Ldh_1_C: lactate/mala 99.6 2.8E-16 6E-21 139.4 5.1 75 248-323 1-79 (174)
45 COG1250 FadB 3-hydroxyacyl-CoA 98.9 7E-09 1.5E-13 100.0 12.1 144 96-267 3-178 (307)
46 PF02737 3HCDH_N: 3-hydroxyacy 98.9 6.6E-09 1.4E-13 92.9 10.2 145 98-270 1-177 (180)
47 PRK07066 3-hydroxybutyryl-CoA 98.8 7.3E-08 1.6E-12 93.8 12.7 148 96-270 7-182 (321)
48 PRK07819 3-hydroxybutyryl-CoA 98.7 9.7E-08 2.1E-12 91.3 11.5 147 94-268 3-183 (286)
49 TIGR02437 FadB fatty oxidation 98.7 2E-07 4.3E-12 99.6 13.6 148 96-271 313-492 (714)
50 PRK11730 fadB multifunctional 98.7 2.1E-07 4.6E-12 99.4 13.2 148 96-271 313-492 (715)
51 KOG2304 3-hydroxyacyl-CoA dehy 98.7 2.8E-08 6E-13 91.4 5.4 155 93-272 8-197 (298)
52 TIGR02440 FadJ fatty oxidation 98.7 2.2E-07 4.7E-12 99.1 12.8 148 96-271 304-484 (699)
53 TIGR02441 fa_ox_alpha_mit fatt 98.6 1.9E-07 4.1E-12 100.1 12.0 148 96-271 335-514 (737)
54 PRK11154 fadJ multifunctional 98.6 2.8E-07 6.1E-12 98.4 13.3 148 96-271 309-489 (708)
55 PRK08293 3-hydroxybutyryl-CoA 98.4 2.1E-06 4.5E-11 81.9 12.2 145 96-267 3-180 (287)
56 PRK05808 3-hydroxybutyryl-CoA 98.4 1.3E-06 2.8E-11 82.9 10.7 145 96-268 3-179 (282)
57 PLN02545 3-hydroxybutyryl-CoA 98.4 4.3E-06 9.4E-11 79.8 14.2 106 94-226 2-121 (295)
58 TIGR02279 PaaC-3OHAcCoADH 3-hy 98.4 2.3E-06 5.1E-11 88.0 12.7 146 95-268 4-181 (503)
59 PRK06130 3-hydroxybutyryl-CoA 98.3 5.7E-06 1.2E-10 79.5 12.5 108 93-226 1-117 (311)
60 PRK06035 3-hydroxyacyl-CoA deh 98.3 6.3E-06 1.4E-10 78.6 12.3 104 96-226 3-123 (291)
61 PRK08268 3-hydroxy-acyl-CoA de 98.3 4.6E-06 9.9E-11 86.0 12.1 147 94-268 5-183 (507)
62 PRK07530 3-hydroxybutyryl-CoA 98.3 5.7E-06 1.2E-10 78.9 11.6 105 95-226 3-121 (292)
63 PRK09260 3-hydroxybutyryl-CoA 98.2 1.1E-05 2.5E-10 76.8 12.0 103 97-225 2-118 (288)
64 PF01210 NAD_Gly3P_dh_N: NAD-d 98.1 6.4E-06 1.4E-10 71.8 7.4 97 98-222 1-103 (157)
65 COG2085 Predicted dinucleotide 98.1 9.8E-05 2.1E-09 67.6 15.2 96 96-225 1-96 (211)
66 TIGR01915 npdG NADPH-dependent 98.1 2.8E-05 6E-10 71.3 11.4 104 97-227 1-106 (219)
67 PRK07531 bifunctional 3-hydrox 98.1 2.4E-05 5.3E-10 80.4 12.2 106 96-227 4-119 (495)
68 PF03807 F420_oxidored: NADP o 98.1 1.1E-05 2.4E-10 63.9 6.7 95 98-224 1-96 (96)
69 PF03721 UDPG_MGDP_dh_N: UDP-g 97.9 3E-05 6.6E-10 69.7 7.3 120 97-236 1-139 (185)
70 PRK06129 3-hydroxyacyl-CoA deh 97.9 9.2E-05 2E-09 71.3 11.0 105 96-226 2-120 (308)
71 COG1004 Ugd Predicted UDP-gluc 97.7 0.00062 1.3E-08 67.7 14.0 98 97-211 1-109 (414)
72 PRK00094 gpsA NAD(P)H-dependen 97.7 0.00027 5.9E-09 67.8 11.1 105 96-226 1-109 (325)
73 PRK12439 NAD(P)H-dependent gly 97.7 0.00019 4E-09 70.3 9.8 107 94-227 5-116 (341)
74 PF03446 NAD_binding_2: NAD bi 97.7 0.00022 4.9E-09 62.3 8.5 65 96-180 1-65 (163)
75 COG0240 GpsA Glycerol-3-phosph 97.6 0.00048 1E-08 67.1 10.9 111 96-236 1-124 (329)
76 PRK15057 UDP-glucose 6-dehydro 97.6 0.0011 2.3E-08 66.4 13.5 114 97-227 1-123 (388)
77 PRK07680 late competence prote 97.6 0.00072 1.6E-08 63.9 11.3 100 97-226 1-100 (273)
78 PTZ00345 glycerol-3-phosphate 97.6 0.00077 1.7E-08 66.9 11.7 80 95-180 10-101 (365)
79 PLN02353 probable UDP-glucose 97.6 0.00057 1.2E-08 70.0 11.0 122 96-227 1-133 (473)
80 TIGR03026 NDP-sugDHase nucleot 97.5 0.00069 1.5E-08 67.9 11.3 110 97-222 1-120 (411)
81 PRK14620 NAD(P)H-dependent gly 97.5 0.00073 1.6E-08 65.4 10.7 103 97-225 1-109 (326)
82 PRK14618 NAD(P)H-dependent gly 97.5 0.00071 1.5E-08 65.6 10.6 77 94-180 2-82 (328)
83 TIGR03376 glycerol3P_DH glycer 97.5 0.00087 1.9E-08 66.0 11.2 82 98-180 1-90 (342)
84 PRK08229 2-dehydropantoate 2-r 97.5 0.0008 1.7E-08 65.3 10.5 108 96-228 2-113 (341)
85 PRK12921 2-dehydropantoate 2-r 97.5 0.00058 1.3E-08 65.0 9.1 107 97-230 1-110 (305)
86 PRK06522 2-dehydropantoate 2-r 97.4 0.0013 2.8E-08 62.4 10.3 105 97-230 1-108 (304)
87 PRK12491 pyrroline-5-carboxyla 97.3 0.0019 4.1E-08 61.5 10.9 69 97-180 3-71 (272)
88 PLN02688 pyrroline-5-carboxyla 97.3 0.002 4.3E-08 60.4 10.8 99 97-226 1-99 (266)
89 PLN03209 translocon at the inn 97.3 0.0021 4.6E-08 67.1 11.6 118 94-222 78-207 (576)
90 PRK08655 prephenate dehydrogen 97.3 0.0038 8.3E-08 63.3 13.1 93 97-223 1-93 (437)
91 PF10727 Rossmann-like: Rossma 97.2 0.0011 2.3E-08 56.3 7.2 102 95-231 9-115 (127)
92 PF01118 Semialdhyde_dh: Semia 97.2 0.0024 5.1E-08 53.1 9.2 95 98-222 1-97 (121)
93 PLN02166 dTDP-glucose 4,6-dehy 97.2 0.0037 8.1E-08 63.3 12.4 111 94-223 118-234 (436)
94 PLN02695 GDP-D-mannose-3',5'-e 97.2 0.0011 2.3E-08 65.5 8.3 129 73-223 1-137 (370)
95 PRK07634 pyrroline-5-carboxyla 97.2 0.0041 8.8E-08 57.4 11.7 72 95-180 3-74 (245)
96 COG0345 ProC Pyrroline-5-carbo 97.2 0.0016 3.4E-08 62.0 8.8 95 96-222 1-95 (266)
97 PRK11880 pyrroline-5-carboxyla 97.2 0.0028 6E-08 59.4 10.3 96 96-225 2-97 (267)
98 PRK07417 arogenate dehydrogena 97.2 0.0024 5.3E-08 60.6 9.9 65 97-180 1-65 (279)
99 PRK06928 pyrroline-5-carboxyla 97.2 0.005 1.1E-07 58.6 11.7 103 96-227 1-103 (277)
100 PRK11064 wecC UDP-N-acetyl-D-m 97.1 0.0035 7.6E-08 63.1 10.8 112 96-227 3-125 (415)
101 KOG1502 Flavonol reductase/cin 97.1 0.0041 9E-08 60.7 10.8 120 95-224 5-129 (327)
102 PRK07679 pyrroline-5-carboxyla 97.1 0.006 1.3E-07 57.9 11.8 69 97-180 4-73 (279)
103 COG1748 LYS9 Saccharopine dehy 97.1 0.0047 1E-07 61.7 11.1 75 96-181 1-77 (389)
104 PRK08269 3-hydroxybutyryl-CoA 97.0 0.0048 1E-07 60.0 10.4 93 158-267 63-175 (314)
105 PRK15182 Vi polysaccharide bio 97.0 0.0035 7.7E-08 63.4 9.4 106 95-222 5-120 (425)
106 CHL00194 ycf39 Ycf39; Provisio 97.0 0.0047 1E-07 59.2 9.8 104 97-222 1-109 (317)
107 PRK07502 cyclohexadienyl dehyd 97.0 0.0057 1.2E-07 58.8 10.3 69 96-180 6-74 (307)
108 PRK14619 NAD(P)H-dependent gly 96.9 0.0053 1.1E-07 59.1 9.6 79 96-223 4-83 (308)
109 PLN02206 UDP-glucuronate decar 96.9 0.0088 1.9E-07 60.7 11.0 112 95-223 118-233 (442)
110 PLN00198 anthocyanidin reducta 96.8 0.0067 1.5E-07 58.4 9.6 115 96-223 9-131 (338)
111 PRK15181 Vi polysaccharide bio 96.8 0.019 4.1E-07 55.9 12.7 116 95-222 14-140 (348)
112 PF13460 NAD_binding_10: NADH( 96.8 0.0053 1.1E-07 53.5 7.8 91 99-223 1-98 (183)
113 PLN02662 cinnamyl-alcohol dehy 96.8 0.011 2.5E-07 56.0 10.4 115 96-222 4-126 (322)
114 COG2910 Putative NADH-flavin r 96.7 0.0077 1.7E-07 54.4 8.2 102 97-223 1-105 (211)
115 COG0287 TyrA Prephenate dehydr 96.7 0.022 4.8E-07 54.6 11.9 68 96-180 3-72 (279)
116 PRK06249 2-dehydropantoate 2-r 96.7 0.017 3.7E-07 55.7 11.3 108 95-228 4-112 (313)
117 PF01113 DapB_N: Dihydrodipico 96.7 0.0091 2E-07 50.0 8.3 74 97-179 1-74 (124)
118 PLN02778 3,5-epimerase/4-reduc 96.7 0.018 3.8E-07 55.1 11.3 88 96-211 9-101 (298)
119 PF01073 3Beta_HSD: 3-beta hyd 96.7 0.0042 9E-08 59.2 6.6 113 101-225 2-117 (280)
120 PRK14982 acyl-ACP reductase; P 96.7 0.0083 1.8E-07 59.0 8.8 98 96-229 155-253 (340)
121 PLN02427 UDP-apiose/xylose syn 96.7 0.0044 9.5E-08 61.1 7.0 116 94-223 12-136 (386)
122 PLN02650 dihydroflavonol-4-red 96.6 0.012 2.6E-07 57.1 9.9 115 96-222 5-127 (351)
123 COG1893 ApbA Ketopantoate redu 96.6 0.0073 1.6E-07 58.5 8.0 112 97-234 1-112 (307)
124 TIGR01505 tartro_sem_red 2-hyd 96.6 0.0073 1.6E-07 57.5 7.8 63 98-180 1-63 (291)
125 PTZ00431 pyrroline carboxylate 96.6 0.015 3.2E-07 54.8 9.5 62 97-180 4-65 (260)
126 PTZ00142 6-phosphogluconate de 96.5 0.013 2.8E-07 60.1 9.6 100 96-224 1-103 (470)
127 TIGR03589 PseB UDP-N-acetylglu 96.5 0.012 2.7E-07 56.7 8.9 112 96-222 4-124 (324)
128 PRK11150 rfaD ADP-L-glycero-D- 96.5 0.024 5.3E-07 53.7 10.7 107 99-222 2-115 (308)
129 PRK14874 aspartate-semialdehyd 96.5 0.027 5.8E-07 55.1 11.0 72 96-181 1-72 (334)
130 PLN02214 cinnamoyl-CoA reducta 96.5 0.02 4.3E-07 55.7 10.0 109 96-222 10-126 (342)
131 PRK06476 pyrroline-5-carboxyla 96.5 0.02 4.4E-07 53.5 9.7 69 97-180 1-69 (258)
132 PRK11559 garR tartronate semia 96.4 0.015 3.3E-07 55.3 8.9 65 96-180 2-66 (296)
133 PRK11908 NAD-dependent epimera 96.4 0.008 1.7E-07 58.2 7.0 107 96-223 1-118 (347)
134 PRK05671 aspartate-semialdehyd 96.4 0.02 4.2E-07 56.3 9.7 75 93-181 1-75 (336)
135 PRK12549 shikimate 5-dehydroge 96.4 0.017 3.6E-07 55.4 9.1 73 96-179 127-199 (284)
136 PRK15461 NADH-dependent gamma- 96.4 0.013 2.7E-07 56.3 8.3 65 96-180 1-65 (296)
137 PRK10675 UDP-galactose-4-epime 96.4 0.034 7.4E-07 53.2 11.3 116 97-222 1-123 (338)
138 PRK06545 prephenate dehydrogen 96.4 0.017 3.6E-07 57.0 9.2 68 97-180 1-68 (359)
139 TIGR00872 gnd_rel 6-phosphoglu 96.4 0.02 4.2E-07 55.0 9.4 96 97-225 1-96 (298)
140 cd05213 NAD_bind_Glutamyl_tRNA 96.4 0.02 4.4E-07 55.4 9.5 105 95-230 177-281 (311)
141 TIGR01745 asd_gamma aspartate- 96.4 0.025 5.4E-07 56.2 10.1 72 97-181 1-73 (366)
142 COG0300 DltE Short-chain dehyd 96.3 0.064 1.4E-06 51.1 12.4 115 94-222 4-142 (265)
143 PRK06728 aspartate-semialdehyd 96.3 0.016 3.6E-07 57.1 8.6 75 94-181 3-77 (347)
144 KOG2711 Glycerol-3-phosphate d 96.3 0.06 1.3E-06 52.8 12.2 130 94-244 19-169 (372)
145 PLN02583 cinnamoyl-CoA reducta 96.3 0.029 6.2E-07 53.4 10.0 114 97-222 7-127 (297)
146 PRK05708 2-dehydropantoate 2-r 96.3 0.07 1.5E-06 51.4 12.7 108 96-231 2-113 (305)
147 PF02558 ApbA: Ketopantoate re 96.3 0.025 5.3E-07 48.1 8.4 119 99-249 1-125 (151)
148 PLN02896 cinnamyl-alcohol dehy 96.2 0.067 1.5E-06 51.9 12.4 28 94-121 8-35 (353)
149 PF02719 Polysacc_synt_2: Poly 96.2 0.0045 9.7E-08 59.7 4.0 121 99-229 1-139 (293)
150 TIGR02354 thiF_fam2 thiamine b 96.2 0.062 1.3E-06 48.9 11.2 25 96-121 21-45 (200)
151 TIGR02622 CDP_4_6_dhtase CDP-g 96.2 0.022 4.8E-07 55.2 8.8 113 96-223 4-127 (349)
152 PRK08040 putative semialdehyde 96.2 0.026 5.7E-07 55.4 9.3 73 95-181 3-75 (336)
153 PRK06598 aspartate-semialdehyd 96.2 0.034 7.4E-07 55.3 10.1 73 96-181 1-74 (369)
154 PF01488 Shikimate_DH: Shikima 96.2 0.015 3.3E-07 49.3 6.6 76 95-183 11-86 (135)
155 COG2084 MmsB 3-hydroxyisobutyr 96.2 0.018 3.9E-07 55.4 7.7 65 97-180 1-65 (286)
156 TIGR03466 HpnA hopanoid-associ 96.1 0.019 4E-07 54.4 7.8 111 97-223 1-113 (328)
157 PLN02989 cinnamyl-alcohol dehy 96.1 0.046 9.9E-07 52.2 10.5 115 96-222 5-128 (325)
158 PLN02383 aspartate semialdehyd 96.1 0.029 6.3E-07 55.3 9.2 73 95-181 6-78 (344)
159 PRK09987 dTDP-4-dehydrorhamnos 96.1 0.021 4.5E-07 54.5 8.0 99 97-222 1-103 (299)
160 PRK08507 prephenate dehydrogen 96.1 0.058 1.3E-06 51.0 10.9 24 97-121 1-24 (275)
161 TIGR01777 yfcH conserved hypot 96.1 0.014 3.1E-07 54.2 6.7 96 99-211 1-100 (292)
162 PRK08125 bifunctional UDP-gluc 96.1 0.019 4.2E-07 61.0 8.4 110 95-223 314-432 (660)
163 PRK11199 tyrA bifunctional cho 96.1 0.025 5.5E-07 56.2 8.7 27 95-121 97-123 (374)
164 PRK07102 short chain dehydroge 96.1 0.07 1.5E-06 48.6 11.0 26 96-121 1-26 (243)
165 PLN02986 cinnamyl-alcohol dehy 96.1 0.049 1.1E-06 52.0 10.3 113 97-222 6-127 (322)
166 PRK12490 6-phosphogluconate de 96.0 0.028 6.1E-07 53.9 8.6 92 97-223 1-95 (299)
167 PLN02657 3,8-divinyl protochlo 96.0 0.14 3.1E-06 51.0 13.8 28 94-121 58-85 (390)
168 PF00899 ThiF: ThiF family; I 96.0 0.021 4.6E-07 48.1 6.7 75 97-180 3-100 (135)
169 PF01370 Epimerase: NAD depend 96.0 0.012 2.5E-07 52.9 5.2 179 99-296 1-196 (236)
170 PLN02240 UDP-glucose 4-epimera 95.9 0.11 2.4E-06 49.9 12.3 115 96-223 5-132 (352)
171 PRK09599 6-phosphogluconate de 95.9 0.036 7.8E-07 53.2 8.6 24 97-121 1-24 (301)
172 PRK08267 short chain dehydroge 95.9 0.031 6.7E-07 51.4 7.8 26 96-121 1-26 (260)
173 PLN02256 arogenate dehydrogena 95.9 0.13 2.8E-06 49.8 12.4 25 95-120 35-59 (304)
174 cd01065 NAD_bind_Shikimate_DH 95.8 0.044 9.5E-07 46.6 8.0 74 95-182 18-91 (155)
175 PLN00141 Tic62-NAD(P)-related 95.8 0.027 6E-07 52.0 7.2 29 93-121 14-42 (251)
176 PRK12480 D-lactate dehydrogena 95.8 0.042 9E-07 53.8 8.6 90 97-224 147-236 (330)
177 PLN02572 UDP-sulfoquinovose sy 95.8 0.041 8.9E-07 55.8 8.8 28 94-121 45-72 (442)
178 PRK12746 short chain dehydroge 95.8 0.22 4.8E-06 45.4 12.9 25 97-121 7-31 (254)
179 COG1086 Predicted nucleoside-d 95.8 0.064 1.4E-06 55.8 10.0 127 93-229 247-387 (588)
180 PLN02968 Probable N-acetyl-gam 95.8 0.052 1.1E-06 54.3 9.2 27 95-121 37-63 (381)
181 TIGR01214 rmlD dTDP-4-dehydror 95.8 0.037 7.9E-07 51.7 7.8 95 98-222 1-99 (287)
182 COG1712 Predicted dinucleotide 95.7 0.084 1.8E-06 49.2 9.8 96 97-225 1-96 (255)
183 PRK13304 L-aspartate dehydroge 95.7 0.09 1.9E-06 49.8 10.4 69 96-180 1-69 (265)
184 cd01487 E1_ThiF_like E1_ThiF_l 95.7 0.11 2.4E-06 46.2 10.3 23 98-121 1-23 (174)
185 PRK12939 short chain dehydroge 95.7 0.13 2.9E-06 46.5 11.2 26 96-121 7-32 (250)
186 KOG1205 Predicted dehydrogenas 95.7 0.14 3E-06 49.3 11.5 117 95-225 11-152 (282)
187 PRK06196 oxidoreductase; Provi 95.6 0.079 1.7E-06 50.7 9.8 114 96-223 26-156 (315)
188 TIGR01181 dTDP_gluc_dehyt dTDP 95.6 0.034 7.4E-07 52.1 7.1 115 98-222 1-124 (317)
189 PRK07806 short chain dehydroge 95.6 0.14 3.1E-06 46.5 11.1 25 97-121 7-31 (248)
190 PRK13394 3-hydroxybutyrate deh 95.6 0.11 2.3E-06 47.6 10.1 26 96-121 7-32 (262)
191 PRK07231 fabG 3-ketoacyl-(acyl 95.6 0.17 3.8E-06 45.8 11.4 26 96-121 5-30 (251)
192 PLN02712 arogenate dehydrogena 95.6 0.19 4.1E-06 53.8 13.2 27 94-121 50-76 (667)
193 PLN02350 phosphogluconate dehy 95.6 0.051 1.1E-06 56.1 8.6 103 94-224 4-109 (493)
194 PRK06901 aspartate-semialdehyd 95.6 0.063 1.4E-06 52.4 8.8 71 96-181 3-73 (322)
195 PRK07326 short chain dehydroge 95.6 0.22 4.7E-06 44.9 11.9 25 97-121 7-31 (237)
196 COG0451 WcaG Nucleoside-diphos 95.6 0.046 1E-06 51.2 7.7 100 98-210 2-105 (314)
197 PRK06194 hypothetical protein; 95.5 0.19 4E-06 47.0 11.7 46 96-150 6-51 (287)
198 COG0136 Asd Aspartate-semialde 95.5 0.048 1E-06 53.4 7.7 74 96-181 1-75 (334)
199 PRK12429 3-hydroxybutyrate deh 95.5 0.2 4.3E-06 45.6 11.5 46 96-150 4-49 (258)
200 TIGR01035 hemA glutamyl-tRNA r 95.5 0.041 8.9E-07 55.5 7.4 105 96-229 180-284 (417)
201 cd01078 NAD_bind_H4MPT_DH NADP 95.4 0.05 1.1E-06 48.6 7.1 74 96-181 28-106 (194)
202 PRK07454 short chain dehydroge 95.4 0.25 5.5E-06 44.7 11.9 28 94-121 4-31 (241)
203 COG0289 DapB Dihydrodipicolina 95.4 0.18 3.8E-06 47.9 11.0 76 95-179 1-77 (266)
204 COG4221 Short-chain alcohol de 95.4 0.1 2.2E-06 49.1 9.2 115 97-223 7-140 (246)
205 TIGR03206 benzo_BadH 2-hydroxy 95.4 0.26 5.7E-06 44.6 12.0 26 96-121 3-28 (250)
206 PRK10538 malonic semialdehyde 95.4 0.056 1.2E-06 49.5 7.6 25 97-121 1-25 (248)
207 PRK14806 bifunctional cyclohex 95.3 0.16 3.5E-06 54.6 11.9 94 97-222 4-97 (735)
208 TIGR02371 ala_DH_arch alanine 95.3 0.071 1.5E-06 52.0 8.4 74 95-180 127-200 (325)
209 TIGR02197 heptose_epim ADP-L-g 95.3 0.099 2.1E-06 49.2 9.2 109 99-223 1-114 (314)
210 PRK12937 short chain dehydroge 95.3 0.056 1.2E-06 48.9 7.2 27 95-121 4-30 (245)
211 PRK12827 short chain dehydroge 95.3 0.42 9.1E-06 43.1 12.9 26 96-121 6-31 (249)
212 PRK07424 bifunctional sterol d 95.3 0.14 3E-06 51.7 10.4 103 96-210 178-290 (406)
213 PRK08213 gluconate 5-dehydroge 95.3 0.27 5.9E-06 45.1 11.6 26 96-121 12-37 (259)
214 PRK06128 oxidoreductase; Provi 95.2 0.45 9.7E-06 45.1 13.4 116 97-223 56-192 (300)
215 PRK15059 tartronate semialdehy 95.2 0.062 1.4E-06 51.6 7.5 63 97-180 1-63 (292)
216 cd05312 NAD_bind_1_malic_enz N 95.2 0.033 7.1E-07 53.4 5.5 128 97-247 26-166 (279)
217 PRK06180 short chain dehydroge 95.2 0.1 2.2E-06 48.8 8.7 26 96-121 4-29 (277)
218 PRK12825 fabG 3-ketoacyl-(acyl 95.2 0.35 7.7E-06 43.3 12.1 27 95-121 5-31 (249)
219 PRK07069 short chain dehydroge 95.2 0.34 7.4E-06 43.9 12.1 115 98-223 1-138 (251)
220 TIGR01296 asd_B aspartate-semi 95.2 0.075 1.6E-06 52.2 8.2 70 98-181 1-70 (339)
221 PRK08339 short chain dehydroge 95.2 0.5 1.1E-05 43.9 13.3 113 97-223 9-144 (263)
222 cd05311 NAD_bind_2_malic_enz N 95.1 0.31 6.6E-06 45.2 11.5 104 96-227 25-133 (226)
223 KOG1430 C-3 sterol dehydrogena 95.1 0.068 1.5E-06 53.0 7.5 106 94-211 2-116 (361)
224 PRK13301 putative L-aspartate 95.1 0.14 2.9E-06 48.9 9.2 86 96-216 2-89 (267)
225 PRK05650 short chain dehydroge 95.1 0.44 9.6E-06 44.1 12.6 25 97-121 1-25 (270)
226 PRK05479 ketol-acid reductoiso 95.1 0.13 2.7E-06 50.6 9.2 67 94-180 15-81 (330)
227 TIGR00873 gnd 6-phosphoglucona 95.1 0.055 1.2E-06 55.5 7.0 101 98-228 1-106 (467)
228 PRK07774 short chain dehydroge 95.1 0.29 6.3E-06 44.4 11.2 26 96-121 6-31 (250)
229 PRK07201 short chain dehydroge 95.1 0.24 5.2E-06 52.0 12.0 112 97-222 1-124 (657)
230 PRK08265 short chain dehydroge 95.1 0.082 1.8E-06 48.9 7.6 25 97-121 7-31 (261)
231 PLN02260 probable rhamnose bio 95.0 0.24 5.2E-06 52.6 12.0 97 94-221 378-479 (668)
232 PRK08643 acetoin reductase; Va 95.0 0.35 7.6E-06 44.2 11.7 25 97-121 3-27 (256)
233 PRK08291 ectoine utilization p 95.0 0.1 2.2E-06 51.0 8.4 74 95-180 131-205 (330)
234 PLN02686 cinnamoyl-CoA reducta 95.0 0.092 2E-06 51.7 8.2 118 95-223 52-180 (367)
235 PRK08664 aspartate-semialdehyd 95.0 0.14 2.9E-06 50.5 9.4 26 96-121 3-28 (349)
236 PRK07832 short chain dehydroge 95.0 0.57 1.2E-05 43.5 13.2 25 97-121 1-25 (272)
237 PRK05653 fabG 3-ketoacyl-(acyl 95.0 0.19 4E-06 45.2 9.6 26 96-121 5-30 (246)
238 TIGR01472 gmd GDP-mannose 4,6- 95.0 0.095 2.1E-06 50.6 8.0 25 97-121 1-25 (343)
239 TIGR02356 adenyl_thiF thiazole 95.0 0.19 4.2E-06 45.5 9.6 25 96-121 21-45 (202)
240 COG0569 TrkA K+ transport syst 94.9 0.028 6.1E-07 52.0 4.1 68 97-180 1-74 (225)
241 COG0677 WecC UDP-N-acetyl-D-ma 94.9 0.26 5.7E-06 49.4 10.9 76 96-184 9-96 (436)
242 KOG0409 Predicted dehydrogenas 94.9 0.1 2.2E-06 50.5 7.8 103 96-221 35-154 (327)
243 PRK06718 precorrin-2 dehydroge 94.9 0.14 3E-06 46.7 8.5 26 95-121 9-34 (202)
244 cd00757 ThiF_MoeB_HesA_family 94.9 0.11 2.4E-06 47.9 8.0 25 96-121 21-45 (228)
245 PRK06181 short chain dehydroge 94.9 0.47 1E-05 43.6 12.2 25 97-121 2-26 (263)
246 PRK10084 dTDP-glucose 4,6 dehy 94.9 0.11 2.3E-06 50.2 8.1 107 97-211 1-114 (352)
247 PRK07478 short chain dehydroge 94.9 0.52 1.1E-05 43.1 12.4 112 97-223 7-143 (254)
248 PRK07067 sorbitol dehydrogenas 94.9 0.15 3.3E-06 46.7 8.8 25 97-121 7-31 (257)
249 PLN02260 probable rhamnose bio 94.9 0.13 2.8E-06 54.6 9.5 117 95-223 5-132 (668)
250 PRK08085 gluconate 5-dehydroge 94.9 0.24 5.2E-06 45.3 10.1 46 96-150 9-54 (254)
251 PRK06197 short chain dehydroge 94.9 0.42 9.1E-06 45.3 12.1 115 96-223 16-152 (306)
252 PRK12747 short chain dehydroge 94.9 0.62 1.4E-05 42.5 12.8 26 96-121 4-29 (252)
253 cd01483 E1_enzyme_family Super 94.8 0.27 6E-06 41.6 9.7 23 98-121 1-23 (143)
254 PRK09186 flagellin modificatio 94.8 0.33 7.2E-06 44.2 10.9 26 96-121 4-29 (256)
255 PRK08644 thiamine biosynthesis 94.8 0.28 6.1E-06 44.9 10.4 26 95-121 27-52 (212)
256 PRK00045 hemA glutamyl-tRNA re 94.8 0.11 2.4E-06 52.4 8.4 107 95-229 181-287 (423)
257 PRK10217 dTDP-glucose 4,6-dehy 94.8 0.096 2.1E-06 50.6 7.6 103 96-210 1-114 (355)
258 PLN02653 GDP-mannose 4,6-dehyd 94.8 0.063 1.4E-06 51.7 6.3 26 96-121 6-31 (340)
259 PRK12475 thiamine/molybdopteri 94.8 0.12 2.6E-06 50.8 8.3 24 97-121 25-48 (338)
260 PRK05565 fabG 3-ketoacyl-(acyl 94.8 0.64 1.4E-05 41.8 12.6 26 96-121 5-30 (247)
261 PRK06101 short chain dehydroge 94.8 0.12 2.6E-06 47.2 7.8 25 97-121 2-26 (240)
262 PRK07814 short chain dehydroge 94.8 0.33 7.1E-06 44.9 10.8 26 96-121 10-35 (263)
263 PRK07825 short chain dehydroge 94.8 0.23 5E-06 46.1 9.8 114 96-223 5-137 (273)
264 PRK12826 3-ketoacyl-(acyl-carr 94.8 0.49 1.1E-05 42.7 11.8 26 96-121 6-31 (251)
265 PRK12384 sorbitol-6-phosphate 94.7 0.55 1.2E-05 43.0 12.1 25 97-121 3-27 (259)
266 TIGR01850 argC N-acetyl-gamma- 94.7 0.17 3.7E-06 49.8 9.2 25 97-121 1-25 (346)
267 PRK07453 protochlorophyllide o 94.7 0.32 6.9E-06 46.6 10.8 26 96-121 6-31 (322)
268 PRK08340 glucose-1-dehydrogena 94.7 0.51 1.1E-05 43.4 11.8 45 97-150 1-45 (259)
269 COG0373 HemA Glutamyl-tRNA red 94.7 0.15 3.3E-06 51.4 8.8 73 95-183 177-249 (414)
270 PRK08618 ornithine cyclodeamin 94.7 0.12 2.6E-06 50.4 7.8 74 96-180 127-200 (325)
271 PRK07985 oxidoreductase; Provi 94.7 0.44 9.5E-06 45.2 11.6 25 97-121 50-74 (294)
272 PRK08945 putative oxoacyl-(acy 94.6 0.83 1.8E-05 41.5 13.0 48 95-151 11-58 (247)
273 PRK06141 ornithine cyclodeamin 94.6 0.13 2.9E-06 49.8 8.1 73 95-180 124-197 (314)
274 KOG1429 dTDP-glucose 4-6-dehyd 94.6 0.069 1.5E-06 51.4 5.8 75 95-181 26-100 (350)
275 PRK05717 oxidoreductase; Valid 94.6 0.082 1.8E-06 48.6 6.3 26 96-121 10-35 (255)
276 PRK06407 ornithine cyclodeamin 94.6 0.14 3.1E-06 49.4 8.2 74 95-179 116-189 (301)
277 PRK12744 short chain dehydroge 94.6 0.6 1.3E-05 42.8 12.1 25 97-121 9-33 (257)
278 PRK08818 prephenate dehydrogen 94.6 0.17 3.7E-06 50.5 8.9 25 95-119 3-27 (370)
279 PRK07523 gluconate 5-dehydroge 94.6 0.47 1E-05 43.4 11.3 26 96-121 10-35 (255)
280 PRK07890 short chain dehydroge 94.6 0.45 9.8E-06 43.4 11.1 26 96-121 5-30 (258)
281 PRK00048 dihydrodipicolinate r 94.6 0.99 2.1E-05 42.5 13.6 24 96-119 1-24 (257)
282 PRK05993 short chain dehydroge 94.5 0.13 2.8E-06 48.1 7.6 26 96-121 4-29 (277)
283 TIGR02992 ectoine_eutC ectoine 94.5 0.16 3.4E-06 49.6 8.1 74 95-180 128-202 (326)
284 PRK06138 short chain dehydroge 94.4 0.79 1.7E-05 41.5 12.3 26 96-121 5-30 (252)
285 PRK08219 short chain dehydroge 94.4 0.22 4.8E-06 44.3 8.6 24 96-119 3-26 (227)
286 PRK06482 short chain dehydroge 94.4 0.17 3.7E-06 47.0 8.0 25 97-121 3-27 (276)
287 TIGR00465 ilvC ketol-acid redu 94.4 0.26 5.7E-06 48.0 9.6 65 96-180 3-67 (314)
288 PLN00203 glutamyl-tRNA reducta 94.4 0.15 3.3E-06 53.0 8.3 106 96-228 266-375 (519)
289 PRK09072 short chain dehydroge 94.4 0.87 1.9E-05 41.9 12.7 26 96-121 5-30 (263)
290 PRK09291 short chain dehydroge 94.4 0.9 1.9E-05 41.4 12.7 25 97-121 3-27 (257)
291 smart00859 Semialdhyde_dh Semi 94.4 0.33 7.3E-06 39.9 8.9 23 98-120 1-23 (122)
292 PRK06172 short chain dehydroge 94.4 0.51 1.1E-05 43.1 10.9 26 96-121 7-32 (253)
293 PRK06182 short chain dehydroge 94.4 0.17 3.6E-06 47.1 7.8 26 96-121 3-28 (273)
294 PRK11863 N-acetyl-gamma-glutam 94.4 0.26 5.5E-06 48.1 9.3 26 96-121 2-27 (313)
295 PRK07688 thiamine/molybdopteri 94.4 0.16 3.4E-06 50.0 8.0 25 96-121 24-48 (339)
296 PRK07666 fabG 3-ketoacyl-(acyl 94.3 0.7 1.5E-05 41.7 11.7 26 96-121 7-32 (239)
297 PRK05690 molybdopterin biosynt 94.3 0.21 4.5E-06 46.8 8.3 25 96-121 32-56 (245)
298 PRK07904 short chain dehydroge 94.3 0.72 1.6E-05 42.7 11.9 26 95-120 7-32 (253)
299 PRK05557 fabG 3-ketoacyl-(acyl 94.3 1.2 2.5E-05 40.0 13.0 27 95-121 4-30 (248)
300 TIGR02415 23BDH acetoin reduct 94.3 0.57 1.2E-05 42.6 11.0 24 98-121 2-25 (254)
301 PRK05866 short chain dehydroge 94.3 0.82 1.8E-05 43.4 12.5 45 97-150 41-85 (293)
302 PLN02712 arogenate dehydrogena 94.3 0.63 1.4E-05 49.9 12.8 25 95-120 368-392 (667)
303 PRK12936 3-ketoacyl-(acyl-carr 94.2 0.2 4.2E-06 45.2 7.9 26 96-121 6-31 (245)
304 COG5322 Predicted dehydrogenas 94.2 0.11 2.4E-06 49.6 6.1 139 97-271 168-306 (351)
305 PF05368 NmrA: NmrA-like famil 94.2 0.26 5.5E-06 44.8 8.5 88 99-211 1-93 (233)
306 PRK00436 argC N-acetyl-gamma-g 94.1 0.34 7.5E-06 47.6 9.8 25 96-120 2-26 (343)
307 PRK05867 short chain dehydroge 94.1 1 2.2E-05 41.1 12.5 45 97-150 10-54 (253)
308 PRK07024 short chain dehydroge 94.1 0.54 1.2E-05 43.2 10.6 26 96-121 2-27 (257)
309 PF02423 OCD_Mu_crystall: Orni 94.1 0.16 3.4E-06 49.4 7.2 72 95-179 127-199 (313)
310 PRK12743 oxidoreductase; Provi 94.1 1.4 3.1E-05 40.4 13.4 25 97-121 3-27 (256)
311 PRK05865 hypothetical protein; 94.1 0.13 2.8E-06 56.5 7.3 103 97-225 1-105 (854)
312 PRK12829 short chain dehydroge 94.1 1.4 3E-05 40.2 13.2 27 95-121 10-36 (264)
313 PRK07677 short chain dehydroge 94.1 1.3 2.7E-05 40.6 12.9 25 97-121 2-26 (252)
314 PRK08703 short chain dehydroge 94.1 1.1 2.5E-05 40.4 12.5 44 97-149 7-50 (239)
315 PLN02780 ketoreductase/ oxidor 94.0 0.42 9.1E-06 46.2 10.1 46 97-151 54-99 (320)
316 PRK07340 ornithine cyclodeamin 94.0 0.19 4.1E-06 48.6 7.7 72 95-180 124-196 (304)
317 PRK13302 putative L-aspartate 94.0 0.13 2.8E-06 48.9 6.4 71 95-181 5-76 (271)
318 PRK09135 pteridine reductase; 94.0 0.43 9.2E-06 43.0 9.6 26 96-121 6-31 (249)
319 COG1090 Predicted nucleoside-d 94.0 0.27 5.9E-06 47.1 8.4 104 99-222 1-110 (297)
320 PRK12828 short chain dehydroge 94.0 0.48 1E-05 42.4 9.9 26 96-121 7-32 (239)
321 PLN02253 xanthoxin dehydrogena 94.0 0.26 5.7E-06 45.8 8.4 25 97-121 19-43 (280)
322 PRK07109 short chain dehydroge 94.0 0.94 2E-05 44.0 12.5 45 97-150 9-53 (334)
323 PRK08063 enoyl-(acyl carrier p 93.9 1.6 3.6E-05 39.4 13.4 25 97-121 5-29 (250)
324 cd01485 E1-1_like Ubiquitin ac 93.9 0.33 7.1E-06 44.0 8.6 24 97-121 20-43 (198)
325 PRK06198 short chain dehydroge 93.9 1.3 2.8E-05 40.5 12.7 26 96-121 6-31 (260)
326 PRK08251 short chain dehydroge 93.9 1.7 3.6E-05 39.4 13.4 25 97-121 3-27 (248)
327 PRK06500 short chain dehydroge 93.9 0.28 6E-06 44.4 8.1 25 97-121 7-31 (249)
328 PRK12320 hypothetical protein; 93.9 0.13 2.9E-06 55.2 6.8 100 97-222 1-101 (699)
329 PRK13535 erythrose 4-phosphate 93.9 0.22 4.8E-06 49.0 7.8 25 96-121 1-25 (336)
330 PRK05876 short chain dehydroge 93.8 0.87 1.9E-05 42.7 11.6 45 97-150 7-51 (275)
331 PRK06125 short chain dehydroge 93.8 1.6 3.5E-05 40.0 13.3 117 96-223 7-140 (259)
332 PRK13940 glutamyl-tRNA reducta 93.8 0.12 2.7E-06 52.1 6.2 73 96-183 181-253 (414)
333 PRK06124 gluconate 5-dehydroge 93.8 0.94 2E-05 41.3 11.6 47 95-150 10-56 (256)
334 PRK06940 short chain dehydroge 93.8 0.77 1.7E-05 43.0 11.2 19 98-117 4-22 (275)
335 PF00185 OTCace: Aspartate/orn 93.8 0.36 7.8E-06 42.2 8.3 75 96-180 2-81 (158)
336 PRK06949 short chain dehydroge 93.8 1.1 2.5E-05 40.7 12.0 26 96-121 9-34 (258)
337 PF03059 NAS: Nicotianamine sy 93.8 0.31 6.6E-06 46.8 8.4 105 96-221 121-229 (276)
338 PRK06823 ornithine cyclodeamin 93.7 0.31 6.6E-06 47.5 8.5 73 95-179 127-199 (315)
339 PRK08223 hypothetical protein; 93.7 0.3 6.5E-06 47.1 8.3 25 96-121 27-51 (287)
340 PRK08300 acetaldehyde dehydrog 93.7 1.3 2.9E-05 43.0 12.7 24 95-119 3-26 (302)
341 PRK07589 ornithine cyclodeamin 93.7 0.24 5.3E-06 48.9 7.8 73 96-180 129-201 (346)
342 PRK08277 D-mannonate oxidoredu 93.7 1.2 2.6E-05 41.3 12.1 26 96-121 10-35 (278)
343 TIGR02355 moeB molybdopterin s 93.6 0.31 6.6E-06 45.6 8.0 25 96-121 24-48 (240)
344 PRK13243 glyoxylate reductase; 93.6 0.25 5.4E-06 48.4 7.7 98 97-230 151-250 (333)
345 PRK05855 short chain dehydroge 93.6 0.81 1.8E-05 46.7 11.8 113 97-223 316-452 (582)
346 PRK05884 short chain dehydroge 93.6 0.29 6.3E-06 44.4 7.7 25 97-121 1-25 (223)
347 PRK06139 short chain dehydroge 93.6 1.3 2.8E-05 43.1 12.7 46 96-150 7-52 (330)
348 PRK08605 D-lactate dehydrogena 93.6 0.16 3.4E-06 49.8 6.2 63 96-180 146-208 (332)
349 PRK06719 precorrin-2 dehydroge 93.5 0.24 5.1E-06 43.3 6.7 25 96-121 13-37 (157)
350 TIGR00978 asd_EA aspartate-sem 93.5 0.45 9.8E-06 46.7 9.4 26 97-122 1-26 (341)
351 PRK00258 aroE shikimate 5-dehy 93.5 0.39 8.5E-06 45.6 8.7 72 96-181 123-194 (278)
352 PRK07063 short chain dehydroge 93.5 1.4 3.1E-05 40.3 12.2 46 96-150 7-52 (260)
353 PRK07062 short chain dehydroge 93.5 1.8 3.8E-05 39.8 12.8 45 97-150 9-53 (265)
354 PRK05875 short chain dehydroge 93.4 1.8 3.9E-05 40.0 12.9 26 96-121 7-32 (276)
355 PRK09242 tropinone reductase; 93.4 2.3 5E-05 38.9 13.5 115 96-223 9-147 (257)
356 PRK06924 short chain dehydroge 93.4 0.17 3.7E-06 46.0 6.0 26 96-121 1-26 (251)
357 TIGR01746 Thioester-redct thio 93.4 1.3 2.8E-05 42.1 12.2 23 98-120 1-23 (367)
358 PRK06179 short chain dehydroge 93.4 0.76 1.7E-05 42.4 10.3 26 96-121 4-29 (270)
359 PRK05786 fabG 3-ketoacyl-(acyl 93.4 0.75 1.6E-05 41.4 10.0 25 97-121 6-30 (238)
360 TIGR03325 BphB_TodD cis-2,3-di 93.4 0.16 3.5E-06 46.8 5.8 26 96-121 5-30 (262)
361 PRK07035 short chain dehydroge 93.4 0.9 2E-05 41.4 10.6 45 97-150 9-53 (252)
362 PLN03129 NADP-dependent malic 93.4 0.15 3.2E-06 53.5 5.9 117 97-236 322-453 (581)
363 TIGR01692 HIBADH 3-hydroxyisob 93.3 0.29 6.3E-06 46.6 7.6 60 101-180 1-60 (288)
364 PRK12935 acetoacetyl-CoA reduc 93.3 1.2 2.7E-05 40.3 11.4 26 96-121 6-31 (247)
365 PRK07574 formate dehydrogenase 93.3 0.46 1E-05 47.6 9.2 99 97-229 193-293 (385)
366 PRK07074 short chain dehydroge 93.3 1.8 3.9E-05 39.5 12.6 25 97-121 3-27 (257)
367 PF03435 Saccharop_dh: Sacchar 93.3 0.16 3.4E-06 50.3 5.9 73 99-182 1-77 (386)
368 PLN02858 fructose-bisphosphate 93.3 0.37 7.9E-06 55.7 9.5 69 93-181 321-389 (1378)
369 PRK07576 short chain dehydroge 93.3 1 2.2E-05 41.7 11.0 26 96-121 9-34 (264)
370 PRK08642 fabG 3-ketoacyl-(acyl 93.3 0.52 1.1E-05 42.8 8.9 26 96-121 5-30 (253)
371 TIGR02853 spore_dpaA dipicolin 93.3 0.43 9.3E-06 45.8 8.6 67 96-180 151-217 (287)
372 PRK06077 fabG 3-ketoacyl-(acyl 93.3 0.86 1.9E-05 41.3 10.3 26 96-121 6-31 (252)
373 KOG2305 3-hydroxyacyl-CoA dehy 93.2 0.1 2.2E-06 48.8 4.0 108 96-228 3-124 (313)
374 PRK06057 short chain dehydroge 93.2 1.4 3.1E-05 40.3 11.8 26 96-121 7-32 (255)
375 PRK06199 ornithine cyclodeamin 93.2 0.36 7.8E-06 48.3 8.3 76 95-179 154-230 (379)
376 COG0002 ArgC Acetylglutamate s 93.2 0.19 4.2E-06 49.4 6.1 27 95-121 1-27 (349)
377 PRK15469 ghrA bifunctional gly 93.2 0.37 8.1E-06 46.8 8.2 91 97-223 137-227 (312)
378 PRK06947 glucose-1-dehydrogena 93.2 1.2 2.7E-05 40.3 11.3 26 96-121 2-27 (248)
379 PRK08263 short chain dehydroge 93.2 0.34 7.4E-06 45.1 7.7 25 97-121 4-28 (275)
380 PRK06153 hypothetical protein; 93.2 0.18 4E-06 50.4 6.1 35 95-136 175-209 (393)
381 cd00762 NAD_bind_malic_enz NAD 93.2 0.16 3.5E-06 48.0 5.4 136 97-254 26-174 (254)
382 PRK13303 L-aspartate dehydroge 93.2 0.9 2E-05 43.0 10.5 24 96-120 1-24 (265)
383 TIGR01963 PHB_DH 3-hydroxybuty 93.2 1.4 3.1E-05 39.8 11.6 25 97-121 2-26 (255)
384 cd01492 Aos1_SUMO Ubiquitin ac 93.1 0.52 1.1E-05 42.7 8.5 25 96-121 21-45 (197)
385 PRK06914 short chain dehydroge 93.1 1.1 2.3E-05 41.7 10.8 25 97-121 4-28 (280)
386 PRK07877 hypothetical protein; 93.1 0.25 5.5E-06 53.3 7.3 27 96-124 107-133 (722)
387 cd01075 NAD_bind_Leu_Phe_Val_D 93.1 0.19 4.1E-06 45.6 5.5 25 96-121 28-52 (200)
388 KOG1683 Hydroxyacyl-CoA dehydr 93.0 0.31 6.6E-06 48.3 7.2 48 162-225 59-106 (380)
389 PRK12823 benD 1,6-dihydroxycyc 93.0 0.56 1.2E-05 43.0 8.7 26 96-121 8-33 (260)
390 PF11975 Glyco_hydro_4C: Famil 93.0 0.073 1.6E-06 49.2 2.8 59 269-332 2-81 (232)
391 PRK08416 7-alpha-hydroxysteroi 93.0 1.8 4E-05 39.8 12.2 26 96-121 8-33 (260)
392 KOG4777 Aspartate-semialdehyde 93.0 0.078 1.7E-06 50.2 2.9 78 97-180 4-85 (361)
393 PRK06935 2-deoxy-D-gluconate 3 93.0 0.31 6.7E-06 44.8 6.9 26 96-121 15-40 (258)
394 PRK12742 oxidoreductase; Provi 92.9 0.82 1.8E-05 41.1 9.6 26 96-121 6-31 (237)
395 PRK07097 gluconate 5-dehydroge 92.9 1.6 3.5E-05 40.2 11.7 25 97-121 11-35 (265)
396 cd01491 Ube1_repeat1 Ubiquitin 92.9 0.55 1.2E-05 45.2 8.7 75 97-180 20-113 (286)
397 PRK08264 short chain dehydroge 92.9 1.1 2.3E-05 40.4 10.3 26 96-121 6-31 (238)
398 PRK06113 7-alpha-hydroxysteroi 92.9 1.5 3.3E-05 40.0 11.4 26 96-121 11-36 (255)
399 TIGR01724 hmd_rel H2-forming N 92.8 0.67 1.4E-05 45.5 9.2 84 109-222 32-116 (341)
400 TIGR01179 galE UDP-glucose-4-e 92.8 0.99 2.2E-05 42.3 10.3 109 98-222 1-120 (328)
401 TIGR01470 cysG_Nterm siroheme 92.8 0.7 1.5E-05 42.2 8.8 67 97-181 10-78 (205)
402 TIGR03736 PRTRC_ThiF PRTRC sys 92.8 1.6 3.4E-05 41.2 11.3 27 94-121 9-35 (244)
403 PRK08324 short chain dehydroge 92.7 0.5 1.1E-05 50.6 9.1 25 97-121 423-447 (681)
404 PRK09134 short chain dehydroge 92.7 1.8 3.9E-05 39.7 11.7 27 95-121 8-34 (258)
405 PF04321 RmlD_sub_bind: RmlD s 92.7 0.36 7.9E-06 45.9 7.2 98 97-222 1-100 (286)
406 TIGR01832 kduD 2-deoxy-D-gluco 92.7 2.2 4.7E-05 38.7 12.1 26 96-121 5-30 (248)
407 PF03949 Malic_M: Malic enzyme 92.7 0.67 1.5E-05 43.9 8.8 131 97-251 26-171 (255)
408 PRK08589 short chain dehydroge 92.6 2.6 5.6E-05 39.2 12.8 26 96-121 6-31 (272)
409 PRK12824 acetoacetyl-CoA reduc 92.6 3.7 7.9E-05 36.9 13.3 25 97-121 3-27 (245)
410 cd00401 AdoHcyase S-adenosyl-L 92.5 0.66 1.4E-05 47.0 9.0 91 95-224 201-291 (413)
411 PRK12367 short chain dehydroge 92.4 0.67 1.4E-05 43.0 8.4 26 96-121 14-39 (245)
412 PLN02928 oxidoreductase family 92.4 0.36 7.7E-06 47.6 6.9 103 97-223 160-263 (347)
413 PRK12557 H(2)-dependent methyl 92.4 1.3 2.9E-05 43.6 10.8 84 109-222 32-116 (342)
414 COG1091 RfbD dTDP-4-dehydrorha 92.4 0.41 8.9E-06 46.0 7.0 95 97-222 1-99 (281)
415 PRK06200 2,3-dihydroxy-2,3-dih 92.4 0.34 7.4E-06 44.6 6.4 26 96-121 6-31 (263)
416 TIGR00507 aroE shikimate 5-deh 92.4 0.74 1.6E-05 43.5 8.7 72 96-182 117-188 (270)
417 PRK08936 glucose-1-dehydrogena 92.3 2.7 5.8E-05 38.6 12.3 26 96-121 7-32 (261)
418 PRK07060 short chain dehydroge 92.3 0.52 1.1E-05 42.5 7.4 26 96-121 9-34 (245)
419 PRK08217 fabG 3-ketoacyl-(acyl 92.3 2.5 5.4E-05 38.1 11.9 26 96-121 5-30 (253)
420 PRK05872 short chain dehydroge 92.2 2.6 5.6E-05 39.9 12.3 44 97-149 10-53 (296)
421 PF00106 adh_short: short chai 92.2 3.4 7.5E-05 34.8 12.0 115 98-224 2-136 (167)
422 PRK06444 prephenate dehydrogen 92.2 0.28 6.2E-06 44.6 5.5 25 97-121 1-25 (197)
423 TIGR01809 Shik-DH-AROM shikima 92.2 0.41 8.8E-06 45.8 6.8 71 96-180 125-198 (282)
424 PF02826 2-Hacid_dh_C: D-isome 92.1 0.37 8E-06 42.7 6.0 93 96-224 36-129 (178)
425 PRK12938 acetyacetyl-CoA reduc 92.1 2.9 6.3E-05 37.8 12.1 25 97-121 4-28 (246)
426 PRK14106 murD UDP-N-acetylmura 92.0 0.58 1.3E-05 47.1 8.1 111 96-224 5-116 (450)
427 PRK07775 short chain dehydroge 92.0 2.2 4.7E-05 39.7 11.4 26 96-121 10-35 (274)
428 PLN02996 fatty acyl-CoA reduct 91.9 2.5 5.3E-05 43.6 12.6 41 169-210 109-149 (491)
429 PLN03139 formate dehydrogenase 91.9 0.87 1.9E-05 45.7 9.1 99 97-229 200-300 (386)
430 PRK05599 hypothetical protein; 91.9 1.8 4E-05 39.6 10.7 45 97-151 1-45 (246)
431 PRK06046 alanine dehydrogenase 91.9 0.61 1.3E-05 45.4 7.8 74 95-180 128-201 (326)
432 PRK15438 erythronate-4-phospha 91.9 0.45 9.7E-06 47.6 6.9 25 96-121 116-140 (378)
433 PRK06701 short chain dehydroge 91.9 0.58 1.3E-05 44.3 7.5 26 96-121 46-71 (290)
434 TIGR01829 AcAcCoA_reduct aceto 91.9 2.9 6.2E-05 37.5 11.7 24 98-121 2-25 (242)
435 PRK09009 C factor cell-cell si 91.9 0.37 8E-06 43.5 5.9 24 97-120 1-24 (235)
436 COG0078 ArgF Ornithine carbamo 91.8 0.96 2.1E-05 43.9 8.8 76 95-179 152-228 (310)
437 TIGR01851 argC_other N-acetyl- 91.8 0.87 1.9E-05 44.4 8.6 25 97-121 2-26 (310)
438 PRK08628 short chain dehydroge 91.7 3.8 8.2E-05 37.4 12.5 25 97-121 8-32 (258)
439 PRK05693 short chain dehydroge 91.6 3.1 6.7E-05 38.5 12.0 26 96-121 1-26 (274)
440 PRK08306 dipicolinate synthase 91.6 0.82 1.8E-05 44.0 8.2 67 96-180 152-218 (296)
441 PRK07201 short chain dehydroge 91.6 2 4.4E-05 45.1 11.8 45 97-150 372-416 (657)
442 PRK07831 short chain dehydroge 91.5 3.9 8.4E-05 37.5 12.5 26 96-121 17-43 (262)
443 COG2423 Predicted ornithine cy 91.5 0.58 1.3E-05 46.0 7.1 73 96-179 130-202 (330)
444 PRK08862 short chain dehydroge 91.5 3.9 8.4E-05 37.3 12.3 44 97-149 6-49 (227)
445 PRK07411 hypothetical protein; 91.5 0.71 1.5E-05 46.3 7.9 25 96-121 38-62 (390)
446 PRK08226 short chain dehydroge 91.4 1.8 4E-05 39.6 10.1 26 96-121 6-31 (263)
447 PRK08762 molybdopterin biosynt 91.4 0.73 1.6E-05 45.8 7.8 25 96-121 135-159 (376)
448 COG1064 AdhP Zn-dependent alco 91.4 3.4 7.4E-05 40.8 12.3 128 94-261 165-301 (339)
449 PF07991 IlvN: Acetohydroxy ac 91.3 1.1 2.3E-05 39.8 7.9 66 95-180 3-68 (165)
450 TIGR03649 ergot_EASG ergot alk 91.3 0.2 4.4E-06 46.9 3.6 24 98-121 1-24 (285)
451 PRK07878 molybdopterin biosynt 91.3 0.79 1.7E-05 45.9 8.0 24 97-121 43-66 (392)
452 TIGR00670 asp_carb_tr aspartat 91.1 1.5 3.3E-05 42.5 9.5 73 95-179 149-223 (301)
453 PLN02503 fatty acyl-CoA reduct 91.1 7.3 0.00016 41.4 15.3 28 93-120 116-143 (605)
454 PRK05597 molybdopterin biosynt 91.0 0.82 1.8E-05 45.2 7.8 76 96-180 28-126 (355)
455 PLN02858 fructose-bisphosphate 91.0 0.86 1.9E-05 52.8 8.9 65 96-180 4-68 (1378)
456 PRK00257 erythronate-4-phospha 91.0 0.65 1.4E-05 46.5 7.1 25 96-121 116-140 (381)
457 cd01489 Uba2_SUMO Ubiquitin ac 91.0 0.91 2E-05 44.3 7.9 23 98-121 1-23 (312)
458 TIGR03693 ocin_ThiF_like putat 91.0 0.64 1.4E-05 49.1 7.2 81 95-183 128-215 (637)
459 KOG2666 UDP-glucose/GDP-mannos 91.0 1.6 3.4E-05 42.9 9.3 78 96-184 1-90 (481)
460 PRK03659 glutathione-regulated 90.9 5.4 0.00012 42.3 14.2 135 97-271 401-542 (601)
461 TIGR01289 LPOR light-dependent 90.9 4.1 8.9E-05 39.0 12.3 24 97-120 4-27 (314)
462 PRK06114 short chain dehydroge 90.8 1.1 2.4E-05 41.0 8.0 25 97-121 9-33 (254)
463 PRK05600 thiamine biosynthesis 90.7 1 2.2E-05 44.9 8.1 25 96-121 41-65 (370)
464 PRK13529 malate dehydrogenase; 90.7 0.52 1.1E-05 49.3 6.2 124 97-236 296-434 (563)
465 TIGR01921 DAP-DH diaminopimela 90.5 1.9 4E-05 42.4 9.6 24 96-120 3-26 (324)
466 PRK08278 short chain dehydroge 90.5 6.1 0.00013 36.8 12.8 26 96-121 6-31 (273)
467 PLN00016 RNA-binding protein; 90.5 2 4.3E-05 42.3 9.9 26 96-121 52-81 (378)
468 PRK06436 glycerate dehydrogena 90.5 0.63 1.4E-05 45.1 6.3 95 97-230 123-219 (303)
469 TIGR01327 PGDH D-3-phosphoglyc 90.5 0.87 1.9E-05 47.4 7.7 63 97-180 139-201 (525)
470 TIGR02632 RhaD_aldol-ADH rhamn 90.4 1.3 2.8E-05 47.6 9.1 25 97-121 415-439 (676)
471 PTZ00317 NADP-dependent malic 90.4 0.52 1.1E-05 49.3 5.9 122 97-236 298-433 (559)
472 PRK05476 S-adenosyl-L-homocyst 90.3 1.2 2.5E-05 45.4 8.2 91 95-224 211-301 (425)
473 PRK07856 short chain dehydroge 90.3 0.89 1.9E-05 41.6 6.9 26 96-121 6-31 (252)
474 PRK08993 2-deoxy-D-gluconate 3 90.2 1.7 3.7E-05 39.8 8.7 25 97-121 11-35 (253)
475 PRK03562 glutathione-regulated 90.1 5.5 0.00012 42.4 13.4 136 97-271 401-542 (621)
476 PRK06523 short chain dehydroge 90.1 0.49 1.1E-05 43.4 4.9 25 97-121 10-34 (260)
477 PF02254 TrkA_N: TrkA-N domain 89.9 1 2.2E-05 36.3 6.2 21 99-120 1-21 (116)
478 cd01484 E1-2_like Ubiquitin ac 89.9 1.4 3E-05 41.2 7.8 23 98-121 1-23 (234)
479 PRK05562 precorrin-2 dehydroge 89.9 2.1 4.5E-05 39.8 8.9 100 95-230 24-127 (223)
480 PRK12481 2-deoxy-D-gluconate 3 89.9 1.4 3E-05 40.5 7.8 25 97-121 9-33 (251)
481 PRK07578 short chain dehydroge 89.8 1.3 2.9E-05 38.9 7.4 23 97-119 1-23 (199)
482 cd01488 Uba3_RUB Ubiquitin act 89.8 1.1 2.5E-05 43.2 7.4 23 98-121 1-23 (291)
483 PRK13581 D-3-phosphoglycerate 89.8 1.2 2.5E-05 46.5 8.0 62 97-180 141-202 (526)
484 TIGR00936 ahcY adenosylhomocys 89.8 1.2 2.6E-05 45.0 7.8 91 95-224 194-284 (406)
485 PRK07889 enoyl-(acyl carrier p 89.8 1.4 3E-05 40.8 7.7 25 97-121 8-34 (256)
486 PRK06463 fabG 3-ketoacyl-(acyl 89.7 1.3 2.8E-05 40.6 7.4 26 96-121 7-32 (255)
487 PRK06484 short chain dehydroge 89.6 0.99 2.2E-05 46.1 7.2 26 96-121 269-294 (520)
488 KOG1201 Hydroxysteroid 17-beta 89.5 6.5 0.00014 38.2 12.1 116 96-222 38-172 (300)
489 PRK06398 aldose dehydrogenase; 89.5 0.76 1.7E-05 42.4 5.8 25 97-121 7-31 (258)
490 PRK05854 short chain dehydroge 89.5 6.5 0.00014 37.6 12.4 46 96-150 14-59 (313)
491 cd05211 NAD_bind_Glu_Leu_Phe_V 89.4 0.78 1.7E-05 42.3 5.7 26 95-121 22-47 (217)
492 COG4007 Predicted dehydrogenas 89.4 5.6 0.00012 38.1 11.3 103 96-232 1-124 (340)
493 PRK09496 trkA potassium transp 89.4 3.7 7.9E-05 41.2 11.0 24 97-121 1-24 (453)
494 PRK09730 putative NAD(P)-bindi 89.3 4.4 9.5E-05 36.4 10.6 25 97-121 2-26 (247)
495 COG1052 LdhA Lactate dehydroge 89.3 1.6 3.5E-05 42.7 8.1 92 96-223 146-237 (324)
496 PRK09424 pntA NAD(P) transhydr 89.3 3.1 6.7E-05 43.3 10.6 26 95-121 164-189 (509)
497 PRK15116 sulfur acceptor prote 89.3 2.1 4.5E-05 40.9 8.6 25 96-121 30-54 (268)
498 PRK12745 3-ketoacyl-(acyl-carr 89.2 7.8 0.00017 35.1 12.2 25 97-121 3-27 (256)
499 PRK06841 short chain dehydroge 89.2 1.9 4E-05 39.3 8.1 26 96-121 15-40 (255)
500 PRK14852 hypothetical protein; 89.2 1.2 2.6E-05 49.6 7.8 25 96-121 332-356 (989)
No 1
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=100.00 E-value=3.9e-82 Score=630.12 Aligned_cols=326 Identities=79% Similarity=1.170 Sum_probs=304.6
Q ss_pred ceeeeecCCC-----CcccceeccccccccccccCccccccCCCCCCCCCCeeEEEeccc-ccccccccCCCCcCCCCcc
Q 019713 2 AVVAQLSPSS-----YTETTRLSSSQLSLSSTHLSSLRRRAFRPIIGPRNPTISCSVNQV-QAPVAVEQDDPKSKTNDCY 75 (337)
Q Consensus 2 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 75 (337)
++||+++++. .+++++++++|+++++++++.|+|+.|+|++|.++++|+|||+++ |+|+++++++++.| +|||
T Consensus 1 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 79 (444)
T PLN00112 1 MAVAELSTPKVTSPFLNTSSRLRSSQLGLSRTHLSNHFRRALLPRRRATNARISCSVNQASQAPAAVQEKGVKTK-KECY 79 (444)
T ss_pred CcchhccccccccccccchhhccccccccccccccccccccccccccccccceeeccccccCCCccccccccccC-CCce
Confidence 3577887664 568889999999999999999999999999999999999999999 88888888887666 9999
Q ss_pred ceeeeeeeccchhhhhhccCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccC
Q 019713 76 GVFCLTYDLKAEEETKSWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFP 155 (337)
Q Consensus 76 gv~~~~~~~~~~~~~~~~~~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~ 155 (337)
|||||+||+++|+.+++|+++.||+||||+|+||+++|+.|+.+++++.+|++.++|+++|+++++++|++|||+|+.++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~ 159 (444)
T PLN00112 80 GVFCLTYDLKAEEETKSWKKLINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYP 159 (444)
T ss_pred EEEEEEEecccchhhhcCCCCeEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhh
Confidence 99999999999999999999999999997799999999999999999988999888888899999999999999999877
Q ss_pred CcccEEEecCcccccCCCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHHHHHHHH
Q 019713 156 LLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKN 235 (337)
Q Consensus 156 ~~~~v~i~t~~~eal~dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t~i~~k~ 235 (337)
++.++.+++++|++++|||+||+++|.||+|||+|.|++..|++|++++++.|+++++|+++||++|||+|+||+++++.
T Consensus 160 ~~~~v~i~~~~ye~~kdaDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVsNPvDv~t~v~~k~ 239 (444)
T PLN00112 160 LLREVSIGIDPYEVFQDAEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVGNPCNTNALICLKN 239 (444)
T ss_pred hcCceEEecCCHHHhCcCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcCCcHHHHHHHHHHH
Confidence 76778888899999999999999999999999999999999999999999999996589999999999999999999999
Q ss_pred CCCCCCCeEEecCchhHHHHHHHHHHHhCCCcccccceEEEeccCCCcccccccceEcCeehhhhhhhcccchHHHHHHH
Q 019713 236 APSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETI 315 (337)
Q Consensus 236 s~~~p~kvIG~gT~LDs~R~~~~lA~~lgv~~~~V~~v~V~GnHG~t~vp~~S~a~V~G~pl~e~i~~~~~~~~e~~~~v 315 (337)
++.+|+|+||+||.||++|++++||+++|+++++|+++|||||||++|||+||+++|+|+|+.+++.+++|+.++|.+++
T Consensus 240 sg~~~~rViGtgT~LDsaR~r~~LA~~l~V~~~~V~~~~V~GeHGdsqvp~wS~a~V~G~pl~e~i~~~~~~~~ei~~~v 319 (444)
T PLN00112 240 APNIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNVTIWGNHSTTQVPDFLNAKINGLPVKEVITDHKWLEEEFTPKV 319 (444)
T ss_pred cCCCCcceEEeeccHHHHHHHHHHHHHhCcCHHHcccceEEecCCCceeeccceeEECCccHHHhhccccchHHHHHHHH
Confidence 98777799999999999999999999999999999877999999999999999999999999999987789899999999
Q ss_pred HhccCcccceehe
Q 019713 316 QKVRLVDNFTLIL 328 (337)
Q Consensus 316 ~~~g~~~~~~l~~ 328 (337)
+++|++.-...++
T Consensus 320 ~~~g~~Ii~~kG~ 332 (444)
T PLN00112 320 QKRGGVLIKKWGR 332 (444)
T ss_pred HHHHHHHHhccCc
Confidence 9999987665543
No 2
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=100.00 E-value=1.9e-68 Score=524.76 Aligned_cols=272 Identities=75% Similarity=1.160 Sum_probs=252.5
Q ss_pred ccccccccccCCCCcCCCCccceeeeeeeccchhh--hhhccCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEe
Q 019713 55 QVQAPVAVEQDDPKSKTNDCYGVFCLTYDLKAEEE--TKSWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKL 132 (337)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~~~--~~~~~~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L 132 (337)
..|+|+.|.+++++.. +.|||||||+||+++|++ .++|+++.||+||||+|+||+++|+.|+.+++++++|+|.|+|
T Consensus 2 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L 80 (387)
T TIGR01757 2 AKQVQAGVATAEAAAT-KKCYGVFCLSYDLKNEDKSLTKSWKKTVNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKL 80 (387)
T ss_pred chhhhcccchhhHHhh-hcceEEEEEEeecCcchhHHHhcCCCCeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEE
Confidence 3478888777777774 899999999999999998 6678889999999977999999999999999999889999999
Q ss_pred ccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhc
Q 019713 133 LGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVA 212 (337)
Q Consensus 133 ~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a 212 (337)
+|+|.++++++|++|||+|+.+++..++++++++|++++|||+||+++|.||+||++|.|++..|++|++++++.|++++
T Consensus 81 ~diD~~~~~a~g~a~DL~d~a~~~~~~v~i~~~~y~~~kdaDIVVitAG~prkpg~tR~dll~~N~~I~k~i~~~I~~~a 160 (387)
T TIGR01757 81 LGSERSKEALEGVAMELEDSLYPLLREVSIGIDPYEVFEDADWALLIGAKPRGPGMERADLLDINGQIFADQGKALNAVA 160 (387)
T ss_pred eccCccchhhhHHHHHHHHhhhhhcCceEEecCCHHHhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999877666788788999999999999999999999999999999999999999999999997
Q ss_pred CCCeEEEEeCCCchhHHHHHHHHCCCCCCCeEEecCchhHHHHHHHHHHHhCCCcccccceEEEeccCCCcccccccceE
Q 019713 213 SRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARI 292 (337)
Q Consensus 213 ~p~aivIvvtNPvd~~t~i~~k~s~~~p~kvIG~gT~LDs~R~~~~lA~~lgv~~~~V~~v~V~GnHG~t~vp~~S~a~V 292 (337)
+|+++|||+|||+|+||+++++.++.+|+|+||+||.||++|+|++||+++++++++|+++|||||||++|||+||+++|
T Consensus 161 ~~~~iviVVsNPvDv~t~v~~k~sg~~~~rviG~gT~LDsaR~r~~LA~~l~v~~~~V~~~~V~GeHGds~vp~~S~a~V 240 (387)
T TIGR01757 161 SKNCKVLVVGNPCNTNALIAMKNAPNIPRKNFHALTRLDENRAKCQLALKSGKFYTSVSNVTIWGNHSTTQVPDFVNAKI 240 (387)
T ss_pred CCCeEEEEcCCcHHHHHHHHHHHcCCCcccEEEecchhHHHHHHHHHHHHHCcChhHcceeEEEecCCCcEEecceeeEE
Confidence 79999999999999999999999977777999999999999999999999999999997679999999999999999999
Q ss_pred cCeehhhhhhhcccchHHHHHHHHhccCcccceeh
Q 019713 293 NGLPVKEIIKDHKWLEEGFTETIQKVRLVDNFTLI 327 (337)
Q Consensus 293 ~G~pl~e~i~~~~~~~~e~~~~v~~~g~~~~~~l~ 327 (337)
+|+|+.+++.+..|+.++|.++++++|+++-...+
T Consensus 241 ~G~pl~~~~~~~~~~~~ei~~~v~~~g~eIi~~KG 275 (387)
T TIGR01757 241 GGRPAKEVIKDTKWLEEEFTPTVQKRGGALIKKWG 275 (387)
T ss_pred CCEEhHHhcccccchHHHHHHHHHHHHHHHHhccC
Confidence 99999999877678889999999999997765543
No 3
>PRK05442 malate dehydrogenase; Provisional
Probab=100.00 E-value=5.2e-55 Score=422.70 Aligned_cols=238 Identities=55% Similarity=0.816 Sum_probs=217.3
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCC
Q 019713 93 WKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFED 172 (337)
Q Consensus 93 ~~~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~d 172 (337)
|++|+||+||||+|+||+++|+.|+.+++++.++++.|+|+|+..++++++|+++||+|+.+++..++++++++|++++|
T Consensus 1 ~~~~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~y~~~~d 80 (326)
T PRK05442 1 MKAPVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVITDDPNVAFKD 80 (326)
T ss_pred CCCCcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEecChHHHhCC
Confidence 57789999999779999999999999999985667788898887677889999999999986665567788899999999
Q ss_pred CcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHHHHHHHHCCCCCC-CeEEecCchh
Q 019713 173 AEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLD 251 (337)
Q Consensus 173 ADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t~i~~k~s~~~p~-kvIG~gT~LD 251 (337)
||+||+++|.||+||++|.|++..|++|+++++++|+++++|++++|++|||+|+||+++++.+|++|+ |+||+ |.||
T Consensus 81 aDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPvDv~t~v~~k~s~g~p~~rViG~-t~LD 159 (326)
T PRK05442 81 ADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVGNPANTNALIAMKNAPDLPAENFTAM-TRLD 159 (326)
T ss_pred CCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCchHHHHHHHHHHcCCCCHHHEEee-eHHH
Confidence 999999999999999999999999999999999999999678999999999999999999999988987 78899 9999
Q ss_pred HHHHHHHHHHHhCCCcccccceEEEeccCCCcccccccceEcCeehhhhhhhcccchHHHHHHHHhccCcccceeheeee
Q 019713 252 ENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLVDNFTLILFVM 331 (337)
Q Consensus 252 s~R~~~~lA~~lgv~~~~V~~v~V~GnHG~t~vp~~S~a~V~G~pl~e~i~~~~~~~~e~~~~v~~~g~~~~~~l~~~~~ 331 (337)
++|++++||+++++++++|++.+||||||++|||+||+++|+|+|+.+++.+++|..+++.++++++||+.-...++.+|
T Consensus 160 s~R~r~~la~~l~v~~~~V~~~vV~GeHG~s~~~~~S~~~v~g~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~~kG~t~~ 239 (326)
T PRK05442 160 HNRALSQLAAKAGVPVADIKKMTVWGNHSATQYPDFRHATIDGKPAAEVINDQAWLEDTFIPTVQKRGAAIIEARGASSA 239 (326)
T ss_pred HHHHHHHHHHHhCcChHHeEEeEEEECCcCceeeccccCEECCEEHHHHccchhhHHHHHHHHHHhhHHHHHhCcCCccH
Confidence 99999999999999999999755699999999999999999999999998776787889999999999988776655444
No 4
>cd05295 MDH_like Malate dehydrogenase-like. These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=9.3e-55 Score=433.80 Aligned_cols=239 Identities=29% Similarity=0.433 Sum_probs=218.9
Q ss_pred eeec--cchhh-hhhccCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCc
Q 019713 81 TYDL--KAEEE-TKSWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLL 157 (337)
Q Consensus 81 ~~~~--~~~~~-~~~~~~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~ 157 (337)
.+++ ++|++ +++++++.+|+|+||+|++|+++++.|++|++||.+|+|.|+|+|++.++++++|++|||+|++++++
T Consensus 105 ~~~~~~~~e~~~~~~~~~p~~V~vtgAag~i~Y~l~~~ia~G~~fG~~~~v~L~LlDi~~~~~~l~G~amDL~D~a~pll 184 (452)
T cd05295 105 ETHIEVEKEEEELRSKINPLQVCITNASAPLCYHLIPSLASGEVFGMEEEISIHLLDSPENLEKLKGLVMEVEDLAFPLL 184 (452)
T ss_pred HHHHHHHHHHHHHhcCCCceEEEEecCcHHHHHHHHHHHhCCcccCCCCeEEEEEEcCCCchhhHHHHHHHHHHhHHhhc
Confidence 3445 33444 55788899999999999999999999999999999999999999988789999999999999998887
Q ss_pred ccEEEecCcccccCCCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCC-CeEEEEeCCCchhHHHHHHHHC
Q 019713 158 REVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASR-NVKVIVVGNPCNTNALICLKNA 236 (337)
Q Consensus 158 ~~v~i~t~~~eal~dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p-~aivIvvtNPvd~~t~i~~k~s 236 (337)
..+.++++++++|+|||+||+++|.||+|||+|.|++..|++|+++++++|+++|++ ++++|++|||+|+||+++++++
T Consensus 185 ~~v~i~~~~~ea~~daDvvIitag~prk~G~~R~DLL~~N~~Ifk~~g~~I~~~a~~~~~VlVv~tNPvD~~t~i~~k~a 264 (452)
T cd05295 185 RGISVTTDLDVAFKDAHVIVLLDDFLIKEGEDLEGCIRSRVAICQLYGPLIEKNAKEDVKVIVAGRTFLNLKTSILIKYA 264 (452)
T ss_pred CCcEEEECCHHHhCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCcHHHHHHHHHHHc
Confidence 778888899999999999999999999999999999999999999999999999532 6778888899999999999999
Q ss_pred CCCCC-CeEEecCchhHHHHHHHHHHHhCCCcccccceEEEeccCCCcccccccceEcC------------eehhhhhhh
Q 019713 237 PSIPA-KNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARING------------LPVKEIIKD 303 (337)
Q Consensus 237 ~~~p~-kvIG~gT~LDs~R~~~~lA~~lgv~~~~V~~v~V~GnHG~t~vp~~S~a~V~G------------~pl~e~i~~ 303 (337)
|++|+ ++||++| ||++|++++||+++|+++++|++++||||||+||||+||+++|+| +|+.+++.+
T Consensus 265 pgiP~~rVig~gt-lds~R~r~~LA~kl~V~~~~V~~~~VwGeHG~sqvpd~S~a~V~G~~~a~~~p~~~~~pl~e~i~d 343 (452)
T cd05295 265 PSIPRKNIIAVAR-LQENRAKALLARKLNVNSAGIKDVIVWGNIGGNTYIDLSKARVYRYDSAIWGPPNYSRPVLELVHD 343 (452)
T ss_pred CCCCHHHEEEecc-hHHHHHHHHHHHHhCcCHHHceeeEEEEccCCceeeeeeEEEEcccccccccccccCccHHHHhcc
Confidence 89998 5678888 779999999999999999999878999999999999999999988 999999877
Q ss_pred cccchHHHHHHHHhccC
Q 019713 304 HKWLEEGFTETIQKVRL 320 (337)
Q Consensus 304 ~~~~~~e~~~~v~~~g~ 320 (337)
++|+.++|.+.|+++|+
T Consensus 344 ~~w~~~~~~~~v~~rg~ 360 (452)
T cd05295 344 SKWINGEFVATLKSLSS 360 (452)
T ss_pred hhhhHHHHHHHHHHHHH
Confidence 78888999999999887
No 5
>KOG1496 consensus Malate dehydrogenase [Energy production and conversion]
Probab=100.00 E-value=9.2e-55 Score=395.88 Aligned_cols=230 Identities=53% Similarity=0.749 Sum_probs=224.7
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCC
Q 019713 93 WKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFED 172 (337)
Q Consensus 93 ~~~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~d 172 (337)
|+++.+|.|.||+|+||+++++.++.+.+||.||++.|+|+|++...+.|+|+.|||+||++|++..+..+++..++|+|
T Consensus 1 ~~epirVlVtGAAGqI~ysll~~ia~G~vfG~dQPiiL~lLdi~~~~~~LegV~mELqD~a~PlL~~Vvattd~~~afkd 80 (332)
T KOG1496|consen 1 MKEPIRVLVTGAAGQIGYSLLPMIARGIVFGKDQPIILHLLDIPPMMSVLEGVKMELQDCALPLLKGVVATTDEVEAFKD 80 (332)
T ss_pred CCCceEEEeecccchhhHHHHHHHcCceeecCCCceEEEeeCCchHHHHHHHHHHHHHhhhhhHHHhhhcccChhhhhcc
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHHHHHHHHCCCCCCCeEEecCchhH
Q 019713 173 AEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDE 252 (337)
Q Consensus 173 ADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t~i~~k~s~~~p~kvIG~gT~LDs 252 (337)
.|++|+.|+.||++||+|.|++..|.+||++++++|++||+|+++|+|++||+|+++.++.+++|.||+++|.+.|+||+
T Consensus 81 v~~ailvGa~PR~eGMERkDll~~NvkIfk~Qg~AL~k~A~~~~KVlVVgNPaNTNali~~k~ApsIP~kNfs~lTRLDh 160 (332)
T KOG1496|consen 81 VDVAILVGAMPRREGMERKDLLSANVKIFKSQGAALEKYAKPNVKVLVVGNPANTNALILKKFAPSIPEKNFSALTRLDH 160 (332)
T ss_pred CcEEEEeccccCcccchhhhHHhhcceeehhhhHHHHHhcCCCceEEEecCccccchhHHhhhCCCCchhcchhhhhhch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCcccccceEEEeccCCCcccccccceEcC----eehhhhhhhcccchHHHHHHHHhccCcc
Q 019713 253 NRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARING----LPVKEIIKDHKWLEEGFTETIQKVRLVD 322 (337)
Q Consensus 253 ~R~~~~lA~~lgv~~~~V~~v~V~GnHG~t~vp~~S~a~V~G----~pl~e~i~~~~~~~~e~~~~v~~~g~~~ 322 (337)
+|+..+||.++||+.++|++++|||||+.||+|+..+++|++ +|+.|.++|+.|++.+|.+.||+||...
T Consensus 161 NRA~~QlA~klgv~~~~VkNviIWGNHSsTQyPD~~hA~V~~~~~~~~v~e~v~d~~wL~g~Fi~tVQkRGaav 234 (332)
T KOG1496|consen 161 NRALAQLALKLGVPVSDVKNVIIWGNHSSTQYPDVNHATVNTNGGEKPVKEAVKDDAWLQGEFIETVQKRGAAV 234 (332)
T ss_pred hhHHHHHHHhhCCchhhcceeEEecccccccCCCccceeeeccCCcccHHHHhccchhhccchhhHHHhcchHh
Confidence 999999999999999999999999999999999999999986 9999999999999999999999999754
No 6
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=100.00 E-value=1.1e-53 Score=413.12 Aligned_cols=236 Identities=58% Similarity=0.827 Sum_probs=212.6
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCC
Q 019713 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (337)
Q Consensus 94 ~~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dA 173 (337)
+++.||+||||+|+||+++++.|+.+++++.++.++|+|+|+..+.++++|+++||+|+.+++...+++++++|++++||
T Consensus 1 ~~p~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~da 80 (323)
T TIGR01759 1 KKPVRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVATTDPEEAFKDV 80 (323)
T ss_pred CCCeEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEecChHHHhCCC
Confidence 46889999997799999999999999999856667888888766667899999999999866655667778899999999
Q ss_pred cEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHHHHHHHHCCCCCC-CeEEecCchhH
Q 019713 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDE 252 (337)
Q Consensus 174 DvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t~i~~k~s~~~p~-kvIG~gT~LDs 252 (337)
|+||+++|.||+|||+|.|++..|++|+++++++|++++.|++++|++|||+|+||+++++.++++|+ |+||+ |.||+
T Consensus 81 DvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPvDv~t~v~~k~s~g~p~~rViG~-t~LDs 159 (323)
T TIGR01759 81 DAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVGNPANTNALIASKNAPDIPPKNFSAM-TRLDH 159 (323)
T ss_pred CEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcHHHHHHHHHHHcCCCCHHHEEEe-eHHHH
Confidence 99999999999999999999999999999999999999433999999999999999999999967887 78897 99999
Q ss_pred HHHHHHHHHHhCCCcccccceEEEeccCCCcccccccceEcCeehhhhhhhcccchHHHHHHHHhccCcccceeheee
Q 019713 253 NRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLVDNFTLILFV 330 (337)
Q Consensus 253 ~R~~~~lA~~lgv~~~~V~~v~V~GnHG~t~vp~~S~a~V~G~pl~e~i~~~~~~~~e~~~~v~~~g~~~~~~l~~~~ 330 (337)
+|+|++||+++|++|.+|++.+||||||++|+|+||+++|+|+|+.+++.++.|+.+++.++++++|++.-...++-+
T Consensus 160 ~R~r~~la~~l~v~~~~V~~~~V~GeHG~s~v~~~S~~~v~g~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~~kG~t~ 237 (323)
T TIGR01759 160 NRAKYQLAAKAGVPVSDVKNVIIWGNHSNTQVPDFTHATVDGRPVKEVIKDDKWLEGEFIPTVQQRGAAVIEARGASS 237 (323)
T ss_pred HHHHHHHHHHhCcChHHeEEeEEEecCCCceeeccccCEECCccHHHHhcchhhHHHHHHHHHHhhHHHHHhccCCcc
Confidence 999999999999999999876799999999999999999999999999877667788999999999998866554433
No 7
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=100.00 E-value=9.9e-54 Score=408.63 Aligned_cols=221 Identities=30% Similarity=0.386 Sum_probs=200.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEec-CcccccCCCcE
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI-NPYELFEDAEW 175 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t-~~~eal~dADv 175 (337)
+||+|||| |+||+++|+.|+..++..| |+|+|+ ++++++|.++||.|+.++....+.++. ++|++++|||+
T Consensus 1 ~KVaviGa-G~VG~s~a~~l~~~~~~~e-----l~LiDi--~~~~~~G~a~DL~~~~~~~~~~~~i~~~~~y~~~~~aDi 72 (313)
T COG0039 1 MKVAVIGA-GNVGSSLAFLLLLQGLGSE-----LVLIDI--NEEKAEGVALDLSHAAAPLGSDVKITGDGDYEDLKGADI 72 (313)
T ss_pred CeEEEECC-ChHHHHHHHHHhcccccce-----EEEEEc--ccccccchhcchhhcchhccCceEEecCCChhhhcCCCE
Confidence 59999996 9999999999966666433 555555 588999999999999977666677765 67999999999
Q ss_pred EEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHHHHHHHHCCCCCC-CeEEecCchhHHH
Q 019713 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDENR 254 (337)
Q Consensus 176 VIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t~i~~k~s~~~p~-kvIG~gT~LDs~R 254 (337)
||++||.||||||+|+||+..|++|+++++++|+++ +||++|+|+|||+|+|||+++|+++ +|+ |+||++|.||++|
T Consensus 73 VvitAG~prKpGmtR~DLl~~Na~I~~~i~~~i~~~-~~d~ivlVvtNPvD~~ty~~~k~sg-~p~~rvig~gt~LDsaR 150 (313)
T COG0039 73 VVITAGVPRKPGMTRLDLLEKNAKIVKDIAKAIAKY-APDAIVLVVTNPVDILTYIAMKFSG-FPKNRVIGSGTVLDSAR 150 (313)
T ss_pred EEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhh-CCCeEEEEecCcHHHHHHHHHHhcC-CCccceecccchHHHHH
Confidence 999999999999999999999999999999999999 7999999999999999999999995 555 7899999999999
Q ss_pred HHHHHHHHhCCCcccccceEEEeccCCCcccccccceEcCeehhhhhh-hcccchHHHHHHHHhccCcccceehe
Q 019713 255 AKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIK-DHKWLEEGFTETIQKVRLVDNFTLIL 328 (337)
Q Consensus 255 ~~~~lA~~lgv~~~~V~~v~V~GnHG~t~vp~~S~a~V~G~pl~e~i~-~~~~~~~e~~~~v~~~g~~~~~~l~~ 328 (337)
|+++||+++|+++.+|+. ||+||||++|||+||+++|+|+|+.++++ ++.|+.+++.+.+|++|+++-..++.
T Consensus 151 ~~~~lae~~~v~~~~V~~-~ViGeHGdt~vp~~S~a~v~G~pl~~~~~~~~~~~~~~i~~~v~~~g~eII~~kG~ 224 (313)
T COG0039 151 FRTFLAEKLGVSPKDVHA-YVIGEHGDTMVPLWSQATVGGKPLEELLKEDTEEDLEELIERVRNAGAEIIEAKGA 224 (313)
T ss_pred HHHHHHHHhCCChhHcee-eEeccCCCceEEeeeeeeECCEEHHHHhhcccHhHHHHHHHHHHhhHHHHHHccCc
Confidence 999999999999999996 99999999999999999999999999998 57788899999999999998776644
No 8
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=1.7e-51 Score=397.82 Aligned_cols=236 Identities=60% Similarity=0.902 Sum_probs=214.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCc
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dAD 174 (337)
+++||+||||+|+||+++|+.|+.+++++.+++++|+|+|+..+.++++|+++||+|+.+++..++++++++|++++|||
T Consensus 1 ~p~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daD 80 (322)
T cd01338 1 KPVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVITDDPNVAFKDAD 80 (322)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEecCcHHHhCCCC
Confidence 47899999977999999999999999998667788999988777788999999999998666656778888999999999
Q ss_pred EEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHHHHHHHHCCCCCC-CeEEecCchhHH
Q 019713 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDEN 253 (337)
Q Consensus 175 vVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t~i~~k~s~~~p~-kvIG~gT~LDs~ 253 (337)
+||+++|.||+|||+|.|++..|++|++++++.|++++.|++++|++|||+|+||+++++.++++|+ ++||+ |.||++
T Consensus 81 ivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t~~~~k~sg~~p~~~ViG~-t~LDs~ 159 (322)
T cd01338 81 WALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVGNPCNTNALIAMKNAPDIPPDNFTAM-TRLDHN 159 (322)
T ss_pred EEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEecCcHHHHHHHHHHHcCCCChHheEEe-hHHHHH
Confidence 9999999999999999999999999999999999999436999999999999999999999966887 78899 999999
Q ss_pred HHHHHHHHHhCCCcccccceEEEeccCCCcccccccceEcCeehhhhhhhcccchHHHHHHHHhccCcccceeheeee
Q 019713 254 RAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLVDNFTLILFVM 331 (337)
Q Consensus 254 R~~~~lA~~lgv~~~~V~~v~V~GnHG~t~vp~~S~a~V~G~pl~e~i~~~~~~~~e~~~~v~~~g~~~~~~l~~~~~ 331 (337)
|+++.+|+++|+++.+|++.+||||||++|+|+||+++++|+|+.+++.+.+|..+++.++++++||+.-...++.+|
T Consensus 160 Rl~~~la~~lgv~~~~v~~~~V~GeHG~s~vp~~S~~~v~g~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~~kG~t~~ 237 (322)
T cd01338 160 RAKSQLAKKAGVPVTDVKNMVIWGNHSPTQYPDFTNATIGGKPAAEVINDRAWLEDEFIPTVQKRGAAIIKARGASSA 237 (322)
T ss_pred HHHHHHHHHhCcChhHeEEEEEEeCCcccEEEehhhcEECCEeHHHhcChHhhHHHHHHHHHHhhHHHHHhCcCCccH
Confidence 999999999999999999756799999999999999999999999988776777889999999999988776655444
No 9
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=2.1e-51 Score=394.85 Aligned_cols=220 Identities=22% Similarity=0.270 Sum_probs=195.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCc-ccEEEecCcccccCCCcEE
Q 019713 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLL-REVKIGINPYELFEDAEWA 176 (337)
Q Consensus 98 KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~-~~v~i~t~~~eal~dADvV 176 (337)
||+|||| |+||+++|+.|+.+++++| + +|+ |.++++++|+++||+|+...+. .++++++++|++++|||+|
T Consensus 1 Ki~IIGa-G~VG~~~a~~l~~~~~~~e---l--vL~--Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~y~~~~~aDiv 72 (307)
T cd05290 1 KLVVIGA-GHVGSAVLNYALALGLFSE---I--VLI--DVNEGVAEGEALDFHHATALTYSTNTKIRAGDYDDCADADII 72 (307)
T ss_pred CEEEECC-CHHHHHHHHHHHhcCCCCE---E--EEE--eCCcchhhHHHHHHHhhhccCCCCCEEEEECCHHHhCCCCEE
Confidence 7999996 9999999999999999875 4 444 4577899999999999773222 3567777899999999999
Q ss_pred EEecccCCCCCCc--hhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHHHHHHHHCCCCCC-CeEEecCchhHH
Q 019713 177 LLIGAKPRGPGME--RAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDEN 253 (337)
Q Consensus 177 Iitag~prk~g~~--R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t~i~~k~s~~~p~-kvIG~gT~LDs~ 253 (337)
|+|+|.||+|||+ |+|++..|++|++++++.|+++ +|++++|++|||+|+||+++++.+ ++|+ |+||+||.|||+
T Consensus 73 vitaG~~~kpg~tr~R~dll~~N~~I~~~i~~~i~~~-~p~~i~ivvsNPvDv~t~~~~k~s-g~p~~rviG~gt~LDs~ 150 (307)
T cd05290 73 VITAGPSIDPGNTDDRLDLAQTNAKIIREIMGNITKV-TKEAVIILITNPLDIAVYIAATEF-DYPANKVIGTGTMLDTA 150 (307)
T ss_pred EECCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEecCcHHHHHHHHHHHh-CcChhheecccchHHHH
Confidence 9999999999999 6999999999999999999999 699999999999999999999999 5665 899999999999
Q ss_pred HHHHHHHHHhCCCcccccceEEEeccCCCcccccccceEcCeehhhhhhh---cccchHHHHHHHHhccCcccceehe
Q 019713 254 RAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKD---HKWLEEGFTETIQKVRLVDNFTLIL 328 (337)
Q Consensus 254 R~~~~lA~~lgv~~~~V~~v~V~GnHG~t~vp~~S~a~V~G~pl~e~i~~---~~~~~~e~~~~v~~~g~~~~~~l~~ 328 (337)
|++++||+++|+++++|++ |||||||++|||+||+++|+|+|+.+++.. +.|..+++.++++++||+.-...++
T Consensus 151 R~~~~la~~l~v~~~~V~~-~ViGeHGds~vp~wS~~~v~g~~l~~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~KG~ 227 (307)
T cd05290 151 RLRRIVADKYGVDPKNVTG-YVLGEHGSHAFPVWSLVNIAGLPLDELEALFGKEPIDKDELLEEVVQAAYDVFNRKGW 227 (307)
T ss_pred HHHHHHHHHhCCCcccEEE-EEEecCCCceEEeeeeeEECCEEHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHccCe
Confidence 9999999999999999997 899999999999999999999999998752 2345678999999999987654443
No 10
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=1.6e-51 Score=398.17 Aligned_cols=234 Identities=51% Similarity=0.748 Sum_probs=210.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcEE
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADvV 176 (337)
.||+||||+|+||+++++.|+.++++++++.+.|+|+|++.++++++|+++||.|+.+++...++++++++++++|||+|
T Consensus 1 ~KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~~~~~~~~~~aDiV 80 (323)
T cd00704 1 LHVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVITTDPEEAFKDVDVA 80 (323)
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEecChHHHhCCCCEE
Confidence 48999998899999999999999999977788899988765448899999999999866666667777899999999999
Q ss_pred EEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHHHHHHHHCCCCCC-CeEEecCchhHHHH
Q 019713 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDENRA 255 (337)
Q Consensus 177 Iitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t~i~~k~s~~~p~-kvIG~gT~LDs~R~ 255 (337)
|+++|.||+||++|.|++..|++|++++++.|+++|+|++++|++|||+|+||+++++.++.+|+ |+||+ |.|||+|+
T Consensus 81 VitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t~~~~k~sg~~p~~~vig~-t~LDs~R~ 159 (323)
T cd00704 81 ILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVGNPANTNALIALKNAPNLPPKNFTAL-TRLDHNRA 159 (323)
T ss_pred EEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeCCcHHHHHHHHHHHcCCCCHHHEEEe-eHHHHHHH
Confidence 99999999999999999999999999999999999559999999999999999999999954677 67777 99999999
Q ss_pred HHHHHHHhCCCcccccceEEEeccCCCcccccccceEcCeehhhhh---hhcccchHHHHHHHHhccCcccceeheeee
Q 019713 256 KCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEII---KDHKWLEEGFTETIQKVRLVDNFTLILFVM 331 (337)
Q Consensus 256 ~~~lA~~lgv~~~~V~~v~V~GnHG~t~vp~~S~a~V~G~pl~e~i---~~~~~~~~e~~~~v~~~g~~~~~~l~~~~~ 331 (337)
|++||++++++|++|++++||||||++|+|+||+++|+|.|+.++. .+++|..++|.++++++|++.-...++.+|
T Consensus 160 r~~la~~l~v~~~~V~~~~V~GeHG~s~v~~~S~~~v~g~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~Ii~~kg~t~~ 238 (323)
T cd00704 160 KAQVARKLGVRVSDVKNVIIWGNHSNTQVPDLSNAVVYGPGGTEWVLDLLDEEWLNDEFVKTVQKRGAAIIKKRGASSA 238 (323)
T ss_pred HHHHHHHhCcCHHHceeeeEEecccCceeeccccceecCccHHHhcccccChHHHHHHHHHHHHhhHHHHHhccCcchh
Confidence 9999999999999998778999999999999999999999999875 344677889999999999988665555444
No 11
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=100.00 E-value=2.1e-51 Score=397.42 Aligned_cols=227 Identities=50% Similarity=0.731 Sum_probs=207.1
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcEEE
Q 019713 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWAL 177 (337)
Q Consensus 98 KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADvVI 177 (337)
||+||||+|+||+++++.|+.+++++.++++.|+|+|++.+.++++|+++||.|+.+++...+..+++++++++|||+||
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~~~~~~~~~~~~~~~~aDiVV 80 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLLDGVVPTHDPAVAFTDVDVAI 80 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeEeehhcccchhcCceeccCChHHHhCCCCEEE
Confidence 69999977999999999999999996434567888888777778999999999998666555555556799999999999
Q ss_pred EecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHHHHHHHHCCCCCCCeEEecCchhHHHHHH
Q 019713 178 LIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKC 257 (337)
Q Consensus 178 itag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t~i~~k~s~~~p~kvIG~gT~LDs~R~~~ 257 (337)
+++|.|+++|++|.+++..|++|+++++++|+++++|++++|++|||+|+||++++++++++|+++||+||.|||+|+|+
T Consensus 81 itAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvsNPvDv~t~v~~~~sg~~~~~vig~gt~LDs~R~r~ 160 (324)
T TIGR01758 81 LVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVGNPANTNALVLSNYAPSIPPKNFSALTRLDHNRALA 160 (324)
T ss_pred EcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcHHHHHHHHHHHcCCCCcceEEEeeehHHHHHHH
Confidence 99999999999999999999999999999999996699999999999999999999999888889999999999999999
Q ss_pred HHHHHhCCCcccccceEEEeccCCCcccccccceEc-C---eehhhhhhhcccchHHHHHHHHhccCcccc
Q 019713 258 QLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARIN-G---LPVKEIIKDHKWLEEGFTETIQKVRLVDNF 324 (337)
Q Consensus 258 ~lA~~lgv~~~~V~~v~V~GnHG~t~vp~~S~a~V~-G---~pl~e~i~~~~~~~~e~~~~v~~~g~~~~~ 324 (337)
+||+++|+++++|++++||||||++|||+||+++|+ | +|+.+++.+++|+.++|.++++++|++...
T Consensus 161 ~la~~l~v~~~~V~~~~V~GeHG~s~v~~~S~~~v~~g~~~~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~ 231 (324)
T TIGR01758 161 QVAERAGVPVSDVKNVIIWGNHSSTQYPDVNHATVTKGGKQKPVREAIKDDAYLDGEFITTVQQRGAAIIR 231 (324)
T ss_pred HHHHHhCCChhhceEeEEEECCCCCcccccccceecCCCCccCHHHHhcchhhHHHHHHHHHHhCHHHHHh
Confidence 999999999999987799999999999999999999 9 999999877667788999999999987755
No 12
>PLN02602 lactate dehydrogenase
Probab=100.00 E-value=2e-49 Score=386.79 Aligned_cols=242 Identities=17% Similarity=0.259 Sum_probs=203.8
Q ss_pred CCccceeeeeee-ccchhhhhhccCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHh
Q 019713 72 NDCYGVFCLTYD-LKAEEETKSWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (337)
Q Consensus 72 ~~~~gv~~~~~~-~~~~~~~~~~~~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~ 150 (337)
+.-|++||.... ..+....+..++.+||+|||| |+||+++|+.|+..++++| + +|+| .++++++|+++||+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~m~~~~~~KI~IIGa-G~VG~~~a~~l~~~~l~~e---l--~LiD--i~~~~~~g~a~DL~ 83 (350)
T PLN02602 12 PGGLDLSQAFFKPIHNSSPPSPTRRHTKVSVVGV-GNVGMAIAQTILTQDLADE---L--ALVD--VNPDKLRGEMLDLQ 83 (350)
T ss_pred cchhhhhhhhhhcccccccccccCCCCEEEEECC-CHHHHHHHHHHHhCCCCCE---E--EEEe--CCCchhhHHHHHHH
Confidence 334668887766 444432121122379999995 9999999999999999865 4 4544 46789999999999
Q ss_pred hhccCCcccEEEec-CcccccCCCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHH
Q 019713 151 DSLFPLLREVKIGI-NPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNA 229 (337)
Q Consensus 151 d~~~~~~~~v~i~t-~~~eal~dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t 229 (337)
|+. ++...+.++. ++|++++|||+||+++|.||+|||+|.|++.+|++|++++++.|+++ +|++++|++|||+|++|
T Consensus 84 ~~~-~~~~~~~i~~~~dy~~~~daDiVVitAG~~~k~g~tR~dll~~N~~I~~~i~~~I~~~-~p~~ivivvtNPvdv~t 161 (350)
T PLN02602 84 HAA-AFLPRTKILASTDYAVTAGSDLCIVTAGARQIPGESRLNLLQRNVALFRKIIPELAKY-SPDTILLIVSNPVDVLT 161 (350)
T ss_pred hhh-hcCCCCEEEeCCCHHHhCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEecCchHHHH
Confidence 998 4443355553 57999999999999999999999999999999999999999999998 79999999999999999
Q ss_pred HHHHHHCCCCCC-CeEEecCchhHHHHHHHHHHHhCCCcccccceEEEeccCCCcccccccceEcCeehhhhhhhc--cc
Q 019713 230 LICLKNAPSIPA-KNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDH--KW 306 (337)
Q Consensus 230 ~i~~k~s~~~p~-kvIG~gT~LDs~R~~~~lA~~lgv~~~~V~~v~V~GnHG~t~vp~~S~a~V~G~pl~e~i~~~--~~ 306 (337)
+++++++ ++|+ |+||+||.||++|++++||+++|+++++|++ +||||||++|||+||+++|+|+|+.+++... .+
T Consensus 162 ~~~~k~s-g~p~~rviG~gt~LDs~R~r~~lA~~l~v~~~~V~~-~ViGeHGds~vp~wS~~~i~G~pl~~~~~~~~~~~ 239 (350)
T PLN02602 162 YVAWKLS-GFPANRVIGSGTNLDSSRFRFLIADHLDVNAQDVQA-YIVGEHGDSSVALWSSVSVGGVPVLSFLEKQQIAY 239 (350)
T ss_pred HHHHHHh-CCCHHHEEeecchHHHHHHHHHHHHHhCCCccceee-eEEecCCCceEeeeeeeeECCEEHHHHhhccCCcc
Confidence 9999999 4887 7889999999999999999999999999997 8999999999999999999999999987542 11
Q ss_pred c---hHHHHHHHHhccCcccce
Q 019713 307 L---EEGFTETIQKVRLVDNFT 325 (337)
Q Consensus 307 ~---~~e~~~~v~~~g~~~~~~ 325 (337)
+ .+++.++++++|++.-..
T Consensus 240 ~~~~~~~i~~~v~~~g~eIi~~ 261 (350)
T PLN02602 240 EKETLEEIHRAVVDSAYEVIKL 261 (350)
T ss_pred CHHHHHHHHHHHHHHHHHHHhc
Confidence 1 457899999999887443
No 13
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=100.00 E-value=1.7e-49 Score=380.37 Aligned_cols=216 Identities=24% Similarity=0.288 Sum_probs=194.9
Q ss_pred EEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcEEEEec
Q 019713 101 VSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIG 180 (337)
Q Consensus 101 IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADvVIita 180 (337)
|||| |+||+++|+.|+.+++++| +. |+ |.++++++|+++||+|+.+.+..+++++.++|++++|||+||+++
T Consensus 1 iIGa-G~VG~~~a~~l~~~~l~~e---l~--L~--Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDivVita 72 (299)
T TIGR01771 1 IIGA-GNVGSSTAFALLNQGIADE---IV--LI--DINKDKAEGEAMDLQHAASFLPTPKKIRSGDYSDCKDADLVVITA 72 (299)
T ss_pred CCCc-CHHHHHHHHHHHhcCCCCE---EE--EE--eCCCChhhHHHHHHHHhhcccCCCeEEecCCHHHHCCCCEEEECC
Confidence 6895 9999999999999999865 44 44 456789999999999998666566778788999999999999999
Q ss_pred ccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHHHHHHHHCCCCCC-CeEEecCchhHHHHHHHH
Q 019713 181 AKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDENRAKCQL 259 (337)
Q Consensus 181 g~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t~i~~k~s~~~p~-kvIG~gT~LDs~R~~~~l 259 (337)
|.||+|||+|.|++.+|++|++++++.|+++ +|++++|++|||+|+||+++++++ ++|+ |+||+||.||++|+++++
T Consensus 73 g~~rk~g~~R~dll~~N~~i~~~~~~~i~~~-~p~~~vivvsNP~d~~t~~~~~~s-g~p~~~viG~gt~LDs~R~~~~l 150 (299)
T TIGR01771 73 GAPQKPGETRLELVGRNVRIMKSIVPEVVKS-GFDGIFLVATNPVDILTYVAWKLS-GFPKNRVIGSGTVLDTARLRYLL 150 (299)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHh-CCCHHHEEeccchHHHHHHHHHH
Confidence 9999999999999999999999999999998 799999999999999999999998 6877 789999999999999999
Q ss_pred HHHhCCCcccccceEEEeccCCCcccccccceEcCeehhhhhhh----cccchHHHHHHHHhccCcccceeh
Q 019713 260 ALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKD----HKWLEEGFTETIQKVRLVDNFTLI 327 (337)
Q Consensus 260 A~~lgv~~~~V~~v~V~GnHG~t~vp~~S~a~V~G~pl~e~i~~----~~~~~~e~~~~v~~~g~~~~~~l~ 327 (337)
|+++|+++.+|+. +||||||++|+|+||+++|+|+|+.+++.+ ..|..+++.++++++|++.-...+
T Consensus 151 a~~l~v~~~~V~~-~v~GeHG~s~vp~~S~~~v~g~pl~~~~~~~~~~~~~~~~~i~~~v~~~g~~ii~~kG 221 (299)
T TIGR01771 151 AEKLGVDPQSVHA-YIIGEHGDSEVPVWSSATIGGVPLLDYLKAKGTETDLDLEEIEKEVRDAAYEIINRKG 221 (299)
T ss_pred HHHhCcCcCeEEE-EEEecCCCceeeceeeeEECCEEHHHHhhhcccccHHHHHHHHHHHHHHHHHHhhcCC
Confidence 9999999999996 899999999999999999999999998754 134567899999999998755444
No 14
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=100.00 E-value=5.4e-49 Score=379.46 Aligned_cols=221 Identities=22% Similarity=0.317 Sum_probs=197.8
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCC
Q 019713 93 WKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFED 172 (337)
Q Consensus 93 ~~~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~d 172 (337)
.+..+||+|||| |+||+++++.|+..+++++ |+|+ |.++++++|++|||+|+. ++..++.+++++|++++|
T Consensus 3 ~~~~~ki~iiGa-G~vG~~~a~~l~~~~~~~e-----l~L~--D~~~~~~~g~~~Dl~~~~-~~~~~~~i~~~~~~~~~~ 73 (315)
T PRK00066 3 KKQHNKVVLVGD-GAVGSSYAYALVNQGIADE-----LVII--DINKEKAEGDAMDLSHAV-PFTSPTKIYAGDYSDCKD 73 (315)
T ss_pred CCCCCEEEEECC-CHHHHHHHHHHHhcCCCCE-----EEEE--eCCCchhHHHHHHHHhhc-cccCCeEEEeCCHHHhCC
Confidence 345689999996 9999999999999999764 4454 457789999999999998 444567777889999999
Q ss_pred CcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHHHHHHHHCCCCCC-CeEEecCchh
Q 019713 173 AEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLD 251 (337)
Q Consensus 173 ADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t~i~~k~s~~~p~-kvIG~gT~LD 251 (337)
||+||+++|.||+|||+|.|++..|++|++++++.++++ +|++++|++|||+|++|+++++++ ++|+ |+||+||.||
T Consensus 74 adivIitag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~-~~~~~vivvsNP~d~~~~~~~k~s-g~p~~~viG~gt~LD 151 (315)
T PRK00066 74 ADLVVITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMAS-GFDGIFLVASNPVDILTYATWKLS-GFPKERVIGSGTSLD 151 (315)
T ss_pred CCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEccCcHHHHHHHHHHHh-CCCHHHEeecCchHH
Confidence 999999999999999999999999999999999999999 799999999999999999999998 5887 6889999999
Q ss_pred HHHHHHHHHHHhCCCcccccceEEEeccCCCcccccccceEcCeehhhhhhhcccc----hHHHHHHHHhccCcccce
Q 019713 252 ENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWL----EEGFTETIQKVRLVDNFT 325 (337)
Q Consensus 252 s~R~~~~lA~~lgv~~~~V~~v~V~GnHG~t~vp~~S~a~V~G~pl~e~i~~~~~~----~~e~~~~v~~~g~~~~~~ 325 (337)
++|+++.+|+++|+++++|++ +||||||++|+|+||+++|+|+|+.+++.+..|. .+++.++++++|++.-..
T Consensus 152 s~R~~~~la~~l~v~~~~V~~-~viGeHG~s~v~~~S~~~v~g~~l~~~~~~~~~~~~~~~~~i~~~v~~~g~~ii~~ 228 (315)
T PRK00066 152 SARFRYMLSEKLDVDPRSVHA-YIIGEHGDTEFPVWSHANVAGVPLEEYLEENEQYDEEDLDEIFENVRDAAYEIIEK 228 (315)
T ss_pred HHHHHHHHHHHhCCCcccEEE-EEEecCCCcceecceeceECCEEHHHHhhhccCcCHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999997 8999999999999999999999999998765554 347899999988876443
No 15
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=4.5e-49 Score=381.47 Aligned_cols=230 Identities=54% Similarity=0.810 Sum_probs=207.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCc
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dAD 174 (337)
++.||+||||+|+||+++++.|+.+++++.++...|+|+|++.+.++++|+++|+.|+.+++..++++..+.+++++|||
T Consensus 1 ~~~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~~~~~~~~l~~aD 80 (325)
T cd01336 1 EPIRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVATTDPEEAFKDVD 80 (325)
T ss_pred CCeEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCceecCCHHHHhCCCC
Confidence 46899999988999999999999999986333456777777656677899999999988666566766655579999999
Q ss_pred EEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHHHHHHHHCCCCCCCeEEecCchhHHH
Q 019713 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENR 254 (337)
Q Consensus 175 vVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t~i~~k~s~~~p~kvIG~gT~LDs~R 254 (337)
+||++||.|+++|++|.+++..|++|++++++.|+++++|++++|++|||+|+||+++++.++++|+++||+||.||++|
T Consensus 81 iVI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t~~~~k~~~~~~~~~ig~gt~LDs~R 160 (325)
T cd01336 81 VAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGNPANTNALILLKYAPSIPKENFTALTRLDHNR 160 (325)
T ss_pred EEEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCcHHHHHHHHHHHcCCCCHHHEEeeehHHHHH
Confidence 99999999999999999999999999999999999996689999999999999999999998789887799999999999
Q ss_pred HHHHHHHHhCCCcccccceEEEeccCCCcccccccceEc----CeehhhhhhhcccchHHHHHHHHhccCcccc
Q 019713 255 AKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARIN----GLPVKEIIKDHKWLEEGFTETIQKVRLVDNF 324 (337)
Q Consensus 255 ~~~~lA~~lgv~~~~V~~v~V~GnHG~t~vp~~S~a~V~----G~pl~e~i~~~~~~~~e~~~~v~~~g~~~~~ 324 (337)
++++||+++++++.+|++.+||||||++|||+||+++|+ |+|+.+++.++.|+.+++.++++++|++.-.
T Consensus 161 ~r~~la~~l~v~~~~v~~~~V~GeHG~s~~~~~S~~~v~~~~~g~~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~ 234 (325)
T cd01336 161 AKSQIALKLGVPVSDVKNVIIWGNHSSTQYPDVNHATVELNGKGKPAREAVKDDAWLNGEFISTVQKRGAAVIK 234 (325)
T ss_pred HHHHHHHHhCcChhhceEeEEEEcCCCCeeeccccceeecCCCCccHHHHhcccchhHHHHHHHHHhhHHHHHH
Confidence 999999999999999987679999999999999999999 9999999877668789999999999998755
No 16
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=8.8e-49 Score=377.45 Aligned_cols=221 Identities=20% Similarity=0.249 Sum_probs=192.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEe-cCcccccCCC
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-INPYELFEDA 173 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-t~~~eal~dA 173 (337)
+.+||+|||| |+||+++|+.|+.+++..| |+|+| .++++++|+++||+|+. ++.....+. +++|++++||
T Consensus 2 ~~~Ki~IiGa-G~VG~~~a~~l~~~~~~~e-----l~LiD--~~~~~~~g~a~Dl~~~~-~~~~~~~v~~~~dy~~~~~a 72 (312)
T cd05293 2 PRNKVTVVGV-GQVGMACAISILAKGLADE-----LVLVD--VVEDKLKGEAMDLQHGS-AFLKNPKIEADKDYSVTANS 72 (312)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhcCCCCE-----EEEEe--CCccHHHHHHHHHHHhh-ccCCCCEEEECCCHHHhCCC
Confidence 3469999995 9999999999999999764 44554 45689999999999998 333212333 4689999999
Q ss_pred cEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHHHHHHHHCCCCCC-CeEEecCchhH
Q 019713 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDE 252 (337)
Q Consensus 174 DvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t~i~~k~s~~~p~-kvIG~gT~LDs 252 (337)
|+||+++|.|++|||+|+|++.+|++|++++++.|+++ +|++++|++|||+|++|+++++++ ++|+ |+||+||.||+
T Consensus 73 divvitaG~~~k~g~~R~dll~~N~~i~~~~~~~i~~~-~p~~~vivvsNP~d~~t~~~~k~s-g~p~~~viG~gt~Ld~ 150 (312)
T cd05293 73 KVVIVTAGARQNEGESRLDLVQRNVDIFKGIIPKLVKY-SPNAILLVVSNPVDIMTYVAWKLS-GLPKHRVIGSGCNLDS 150 (312)
T ss_pred CEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEccChHHHHHHHHHHHh-CCCHHHEEecCchHHH
Confidence 99999999999999999999999999999999999999 799999999999999999999998 6776 78999999999
Q ss_pred HHHHHHHHHHhCCCcccccceEEEeccCCCcccccccceEcCeehhhhhhh-----cccchHHHHHHHHhccCcccceeh
Q 019713 253 NRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKD-----HKWLEEGFTETIQKVRLVDNFTLI 327 (337)
Q Consensus 253 ~R~~~~lA~~lgv~~~~V~~v~V~GnHG~t~vp~~S~a~V~G~pl~e~i~~-----~~~~~~e~~~~v~~~g~~~~~~l~ 327 (337)
+|+++++|+++|+++.+|++ +||||||++|||+||+++|+|+|+.+++.. +....+++.++++++||+.-...+
T Consensus 151 ~R~~~~la~~l~v~~~~v~~-~v~GeHG~s~vp~~S~~~i~g~~l~~~~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~kg 229 (312)
T cd05293 151 ARFRYLIAERLGVAPSSVHG-WIIGEHGDSSVPVWSGVNVAGVRLQDLNPDIGTDKDPEKWKEVHKQVVDSAYEVIKLKG 229 (312)
T ss_pred HHHHHHHHHHhCCChhhEEE-EEeecCCCCccccceeceECCEEHHHHhhhccccccHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999996 899999999999999999999999998632 111247899999999998765443
No 17
>PLN00135 malate dehydrogenase
Probab=100.00 E-value=7.1e-49 Score=377.17 Aligned_cols=208 Identities=43% Similarity=0.657 Sum_probs=190.7
Q ss_pred HHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcEEEEecccCCCCCCchhhhHH
Q 019713 116 LAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLD 195 (337)
Q Consensus 116 L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADvVIitag~prk~g~~R~dll~ 195 (337)
|++|++||.++++.|+|+|++.++++++|++|||.|+.+++...+++++++|++++|||+||+++|.||+||++|.+++.
T Consensus 2 ~~~g~~~g~~~~~~l~L~D~~~~~~~a~g~~~Dl~da~~~~~~~i~~~~~~y~~~~daDiVVitAG~~~k~g~sR~dll~ 81 (309)
T PLN00135 2 IARGVMLGPDQPVILHMLDIPPAAEALNGVKMELIDAAFPLLKGVVATTDVVEACKGVNIAVMVGGFPRKEGMERKDVMS 81 (309)
T ss_pred cccccccCCCCeEEEEEecCcccccchhhHHHHHHhhhHHhcCCcEecCCHHHHhCCCCEEEEeCCCCCCCCCcHHHHHH
Confidence 57899999889999999988777799999999999998666556666566699999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHHHHHHHHCCCCCCCeEEecCchhHHHHHHHHHHHhCCCcccccceEE
Q 019713 196 INGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTI 275 (337)
Q Consensus 196 ~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t~i~~k~s~~~p~kvIG~gT~LDs~R~~~~lA~~lgv~~~~V~~v~V 275 (337)
.|++|++++++.|+++++|++++|++|||+|+||+++++.++.+++|+||+||.||++|+|++||+++|+++++|+++||
T Consensus 82 ~N~~I~~~i~~~i~~~~~p~aivivvsNPvDv~t~~~~~~sg~~~~~vig~gt~LDsaR~r~~la~~l~v~~~~V~~~~V 161 (309)
T PLN00135 82 KNVSIYKSQASALEKHAAPDCKVLVVANPANTNALILKEFAPSIPEKNITCLTRLDHNRALGQISERLGVPVSDVKNVII 161 (309)
T ss_pred HHHHHHHHHHHHHHHhcCCCeEEEEeCCcHHHHHHHHHHHcCCCCccEEEeeehHHHHHHHHHHHHHhCcChhhceeeEE
Confidence 99999999999999965899999999999999999999999655569999999999999999999999999999965699
Q ss_pred EeccCCCcccccccceE----cCeehhhhhhhcccchHHHHHHHHhccCccc
Q 019713 276 WGNHSTTQVPDFLNARI----NGLPVKEIIKDHKWLEEGFTETIQKVRLVDN 323 (337)
Q Consensus 276 ~GnHG~t~vp~~S~a~V----~G~pl~e~i~~~~~~~~e~~~~v~~~g~~~~ 323 (337)
|||||++|||+||+++| +|+|+.+++.+++|+.+++.++++++|++.-
T Consensus 162 lGeHG~s~v~~~S~a~v~~~~~g~p~~e~~~~~~~~~~~i~~~v~~~g~~Ii 213 (309)
T PLN00135 162 WGNHSSTQYPDVNHATVKTPSGEKPVRELVADDAWLNGEFITTVQQRGAAII 213 (309)
T ss_pred EEcCCCceeeccccceEecCCCCcCHHHHhCchhhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999 9999999876666778999999999999773
No 18
>TIGR01756 LDH_protist lactate dehydrogenase. This model represents a family of protist lactate dehydrogenases which have aparrently evolved from a recent protist malate dehydrogenase ancestor. Lactate dehydrogenase converts the hydroxyl at C-2 of lactate to a carbonyl in the product, pyruvate. The preference of this enzyme for NAD or NADP has not been determined. A critical residue in malate dehydrogenase, arginine-91 (T. vaginalis numbering) has been mutated to a leucine, eliminating the positive charge which complemeted the carboxylate in malate which is absent in lactate. Several other more subtle changes are proposed to make the active site smaller to accomadate the less bulky lactate molecule.
Probab=100.00 E-value=8.4e-48 Score=370.48 Aligned_cols=213 Identities=36% Similarity=0.529 Sum_probs=187.5
Q ss_pred HHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcEEEEecccCCCCCCchhh
Q 019713 113 LFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAG 192 (337)
Q Consensus 113 a~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADvVIitag~prk~g~~R~d 192 (337)
.+.|++|++|| +++|.|+|+|++.++++++|++|||.|+.++......++++.+++++|||+||+|+|.||+|||+|.|
T Consensus 2 ~~~~~~g~~~g-~~~~~l~L~D~~~~~~~a~g~a~Dl~d~~~~~~~~~i~~~~~~~~~~daDiVVitaG~~~k~g~tR~d 80 (313)
T TIGR01756 2 SHWIANGDLYG-NRPVCLHLLEIPPALNRLEALAMELEDCAFPNLAGTIVTTKLEEAFKDIDCAFLVASVPLKPGEVRAD 80 (313)
T ss_pred cceeccCcccC-CCeEEEEEecCCCccchhHhHHHHHHHhccccCCceEecCCHHHHhCCCCEEEECCCCCCCcCCCHHH
Confidence 46788999999 89999999999888899999999999998444333344444447999999999999999999999999
Q ss_pred hHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHHHHHH-HHCCCCCCCeEEecCchhHHHHHHHHHHHhCCCccccc
Q 019713 193 LLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICL-KNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVS 271 (337)
Q Consensus 193 ll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t~i~~-k~s~~~p~kvIG~gT~LDs~R~~~~lA~~lgv~~~~V~ 271 (337)
++..|++|++++++.|++++.|+++||++|||+|+||++++ +.+ ++|+++||+||.|||+|++++||++++++|++|+
T Consensus 81 ll~~N~~I~~~i~~~i~~~a~~~~ivivvtNPvDv~t~v~~~~~s-g~p~~vig~gt~LDsaR~r~~la~~l~v~~~~V~ 159 (313)
T TIGR01756 81 LLTKNTPIFKATGEALSEYAKPTVKVLVIGNPVNTNCLVAMLHAP-KLSAENFSSLCMLDHNRAVSRIASKLKVPVDHIY 159 (313)
T ss_pred HHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCchHHHHHHHHHHcC-CCCHHHEEecccHHHHHHHHHHHHHhCcChhhee
Confidence 99999999999999999996677999999999999999995 654 8998899999999999999999999999999998
Q ss_pred ceEEEeccCCCcccccccceE--cCeehhhh--hhhcccchHHHHHHHHhccCcccceehe
Q 019713 272 NMTIWGNHSTTQVPDFLNARI--NGLPVKEI--IKDHKWLEEGFTETIQKVRLVDNFTLIL 328 (337)
Q Consensus 272 ~v~V~GnHG~t~vp~~S~a~V--~G~pl~e~--i~~~~~~~~e~~~~v~~~g~~~~~~l~~ 328 (337)
+.+||||||++|||+||+++| +|.|+.++ + +++|..+++.++++++|++.-...++
T Consensus 160 ~~~V~GeHG~s~vp~~S~~~V~~~G~~~~~~~~~-~~~~~~~~i~~~v~~~g~~Ii~~kg~ 219 (313)
T TIGR01756 160 HVVVWGNHAESMVADLTHAEFTKNGKHQKVFDEL-CRDYPEPDFFEVIAQRAWKILEMRGF 219 (313)
T ss_pred eeEEEECCCCceeecccccEEecCCeehhHhhhc-CcHhHHHHHHHHHHHHHHHHHhCcCC
Confidence 767999999999999999999 99997654 4 23477889999999999988554443
No 19
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=100.00 E-value=3.7e-47 Score=365.03 Aligned_cols=218 Identities=23% Similarity=0.340 Sum_probs=194.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcEE
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADvV 176 (337)
+||+|||+ |.||+++++.|+..++..+ |.| + |+++++++++++||+|+.......+.+..+++++++|||+|
T Consensus 1 ~kI~IIGa-G~vG~~~a~~l~~~g~~~e---i~l--~--D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~~~l~~aDIV 72 (306)
T cd05291 1 RKVVIIGA-GHVGSSFAYSLVNQGIADE---LVL--I--DINEEKAEGEALDLEDALAFLPSPVKIKAGDYSDCKDADIV 72 (306)
T ss_pred CEEEEECC-CHHHHHHHHHHHhcCCCCE---EEE--E--eCCcchhhHhHhhHHHHhhccCCCeEEEcCCHHHhCCCCEE
Confidence 38999995 9999999999999998654 544 3 55678899999999998754444556666788999999999
Q ss_pred EEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHHHHHHHHCCCCCC-CeEEecCchhHHHH
Q 019713 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDENRA 255 (337)
Q Consensus 177 Iitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t~i~~k~s~~~p~-kvIG~gT~LDs~R~ 255 (337)
|+++|.||+|||+|.|++.+|++|++++++.|+++ +|+++||++|||+|+||+++++++ ++|+ |+||+||.||++|+
T Consensus 73 Iitag~~~~~g~~R~dll~~N~~i~~~~~~~i~~~-~~~~~vivvsNP~d~~~~~~~~~~-g~p~~~v~g~gt~LDs~R~ 150 (306)
T cd05291 73 VITAGAPQKPGETRLDLLEKNAKIMKSIVPKIKAS-GFDGIFLVASNPVDVITYVVQKLS-GLPKNRVIGTGTSLDTARL 150 (306)
T ss_pred EEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEecChHHHHHHHHHHHh-CcCHHHEeeccchHHHHHH
Confidence 99999999999999999999999999999999998 799999999999999999999986 7876 77999999999999
Q ss_pred HHHHHHHhCCCcccccceEEEeccCCCcccccccceEcCeehhhhhhhcccc---hHHHHHHHHhccCcccce
Q 019713 256 KCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWL---EEGFTETIQKVRLVDNFT 325 (337)
Q Consensus 256 ~~~lA~~lgv~~~~V~~v~V~GnHG~t~vp~~S~a~V~G~pl~e~i~~~~~~---~~e~~~~v~~~g~~~~~~ 325 (337)
+++||+++|+++.+|++ +||||||++|+|+||+++|+|+|+.+++.+..|. .+++.++++++|+++-..
T Consensus 151 ~~~la~~l~v~~~~v~~-~V~G~Hg~s~~~~~S~~~v~g~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~ii~~ 222 (306)
T cd05291 151 RRALAEKLNVDPRSVHA-YVLGEHGDSQFVAWSTVTVGGKPLLDLLKEGKLSELDLDEIEEDVRKAGYEIING 222 (306)
T ss_pred HHHHHHHHCCCcccceE-EEEecCCCceeecceeeEEcCEEHHHHhhccccChHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999997 9999999999999999999999999998765564 567899999998876443
No 20
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=100.00 E-value=4.1e-46 Score=357.14 Aligned_cols=213 Identities=24% Similarity=0.316 Sum_probs=192.2
Q ss_pred EEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEe-cCcccccCCCcEEE
Q 019713 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-INPYELFEDAEWAL 177 (337)
Q Consensus 99 I~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-t~~~eal~dADvVI 177 (337)
|+|||| |.||+++++.|+..+++++ +. |+ |.++++++|+++||+|+..++ ...++. ++++++++|||+||
T Consensus 1 i~iiGa-G~VG~~~a~~l~~~~~~~e---l~--l~--D~~~~~~~g~~~DL~~~~~~~-~~~~i~~~~~~~~l~~aDiVI 71 (300)
T cd00300 1 ITIIGA-GNVGAAVAFALIAKGLASE---LV--LV--DVNEEKAKGDALDLSHASAFL-ATGTIVRGGDYADAADADIVV 71 (300)
T ss_pred CEEECC-CHHHHHHHHHHHhcCCCCE---EE--EE--eCCccHHHHHHHhHHHhcccc-CCCeEEECCCHHHhCCCCEEE
Confidence 689995 9999999999999999865 44 44 456788999999999998553 333333 45689999999999
Q ss_pred EecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHHHHHHHHCCCCCC-CeEEecCchhHHHHH
Q 019713 178 LIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDENRAK 256 (337)
Q Consensus 178 itag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t~i~~k~s~~~p~-kvIG~gT~LDs~R~~ 256 (337)
+++|.|++|||+|.+++.+|+++++++++.|+++ +|++++|++|||+|++|+++++++ ++|+ |+||+||.||++|++
T Consensus 72 itag~p~~~~~~R~~l~~~n~~i~~~~~~~i~~~-~p~~~viv~sNP~d~~~~~~~~~s-g~~~~kviG~gt~lDs~r~~ 149 (300)
T cd00300 72 ITAGAPRKPGETRLDLINRNAPILRSVITNLKKY-GPDAIILVVSNPVDILTYVAQKLS-GLPKNRVIGSGTLLDSARFR 149 (300)
T ss_pred EcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEccChHHHHHHHHHHHh-CcCHHHEEecCCcHHHHHHH
Confidence 9999999999999999999999999999999999 699999999999999999999998 5775 789999999999999
Q ss_pred HHHHHHhCCCcccccceEEEeccCCCcccccccceEcCeehhhhhhhcccchHHHHHHHHhccCccc
Q 019713 257 CQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLVDN 323 (337)
Q Consensus 257 ~~lA~~lgv~~~~V~~v~V~GnHG~t~vp~~S~a~V~G~pl~e~i~~~~~~~~e~~~~v~~~g~~~~ 323 (337)
+++|+++|+++.+|++ +|+||||++|+|+||+++|+|+|+.+++++.+|..+++.++++++|++.-
T Consensus 150 ~~la~~l~v~~~~v~~-~viGeHg~s~v~~~S~~~v~g~p~~~~~~~~~~~~~~l~~~v~~~~~~ii 215 (300)
T cd00300 150 SLLAEKLDVDPQSVHA-YVLGEHGDSQVVAWSTATVGGLPLEELAPFTKLDLEAIEEEVRTSGYEII 215 (300)
T ss_pred HHHHHHhCCCcccEEE-EEEeccCCceeeeeeeeEECCEEHHHhhcccHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999997 89999999999999999999999999988777888999999999998763
No 21
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=5.2e-46 Score=357.48 Aligned_cols=213 Identities=25% Similarity=0.259 Sum_probs=180.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEe-cCc--ccccCCC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-INP--YELFEDA 173 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-t~~--~eal~dA 173 (337)
+||+||||+|+||+++|+.|+.+++..| |+|+|++ +++|++|||+|+..+ .++... .++ |++++||
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~e-----lvLiDi~----~a~g~alDL~~~~~~--~~i~~~~~~~~~y~~~~da 69 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSE-----LALYDIV----NTPGVAADLSHINTP--AKVTGYLGPEELKKALKGA 69 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcE-----EEEEecC----ccceeehHhHhCCCc--ceEEEecCCCchHHhcCCC
Confidence 5999999779999999999999999754 5566553 789999999998721 244432 222 8999999
Q ss_pred cEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhH----HHHHHHHCCCCCC-CeEEecC
Q 019713 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTN----ALICLKNAPSIPA-KNFHALT 248 (337)
Q Consensus 174 DvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~----t~i~~k~s~~~p~-kvIG~gT 248 (337)
|+||+|+|.||+|||+|+|++..|.+|++++++.|+++ +|++|+|++|||+|+| |+++++.+ ++|+ |+||+++
T Consensus 70 DivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~-~p~a~vivvtNPvDv~~~i~t~~~~~~s-~~p~~rviG~~~ 147 (310)
T cd01337 70 DVVVIPAGVPRKPGMTRDDLFNINAGIVRDLATAVAKA-CPKALILIISNPVNSTVPIAAEVLKKAG-VYDPKRLFGVTT 147 (310)
T ss_pred CEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEccCchhhHHHHHHHHHHHhc-CCCHHHEEeeec
Confidence 99999999999999999999999999999999999999 7999999999999998 77888887 5776 7899976
Q ss_pred chhHHHHHHHHHHHhCCCcccccceEEEecc-CCCcccccccceEcCeehhhhhhhcccchHHHHHHHHhccCccccee-
Q 019713 249 RLDENRAKCQLALKAGVFYDKVSNMTIWGNH-STTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLVDNFTL- 326 (337)
Q Consensus 249 ~LDs~R~~~~lA~~lgv~~~~V~~v~V~GnH-G~t~vp~~S~a~V~G~pl~e~i~~~~~~~~e~~~~v~~~g~~~~~~l- 326 (337)
|||+|++++||+++|+++++|+ .+||||| |++|||+||++++. .++ .+ . ..+++.++++++||+.-..+
T Consensus 148 -LDs~R~~~~la~~l~v~~~~V~-~~v~GeHsGds~vp~~S~~~~~----~~~-~~-~-~~~~i~~~v~~~g~~Ii~~k~ 218 (310)
T cd01337 148 -LDVVRANTFVAELLGLDPAKVN-VPVIGGHSGVTILPLLSQCQPP----FTF-DQ-E-EIEALTHRIQFGGDEVVKAKA 218 (310)
T ss_pred -hHHHHHHHHHHHHhCcCHHHEE-EEEEecCCCCceeccccccccc----ccC-CH-H-HHHHHHHHHHHHHHHHHhCcc
Confidence 9999999999999999999999 5999999 89999999999763 333 11 2 25789999999999887653
Q ss_pred --heeee
Q 019713 327 --ILFVM 331 (337)
Q Consensus 327 --~~~~~ 331 (337)
++-||
T Consensus 219 gkg~t~~ 225 (310)
T cd01337 219 GAGSATL 225 (310)
T ss_pred CCCCcch
Confidence 55444
No 22
>KOG1495 consensus Lactate dehydrogenase [Energy production and conversion]
Probab=100.00 E-value=1.3e-45 Score=340.71 Aligned_cols=227 Identities=19% Similarity=0.263 Sum_probs=193.3
Q ss_pred eeeeccchhhhhhccCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCccc
Q 019713 80 LTYDLKAEEETKSWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLRE 159 (337)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~ 159 (337)
+..++.++++ .+..||.|+|+ |+||.++|+.|..+++..| ++| + |.++++++|++|||+|.+ +++..
T Consensus 8 ~~~~~~~~~~----~~~~KItVVG~-G~VGmAca~siL~k~Lade---l~l--v--Dv~~dklkGE~MDLqH~s-~f~~~ 74 (332)
T KOG1495|consen 8 LIANSAEEKE----FKHNKITVVGV-GQVGMACAISILLKGLADE---LVL--V--DVNEDKLKGEMMDLQHGS-AFLST 74 (332)
T ss_pred hhhccccccc----ccCceEEEEcc-chHHHHHHHHHHHhhhhhc---eEE--E--ecCcchhhhhhhhhcccc-ccccC
Confidence 3444444444 23579999995 9999999999999999876 554 3 557789999999999988 55443
Q ss_pred EEEe-cCcccccCCCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHHHHHHHHCCC
Q 019713 160 VKIG-INPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPS 238 (337)
Q Consensus 160 v~i~-t~~~eal~dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t~i~~k~s~~ 238 (337)
-.+. ..||.+.+|+|+||+|+|...++|++|++++++|+.|||.+.+.|.+| +||+++|++|||+|+|||++||.+ +
T Consensus 75 ~~V~~~~Dy~~sa~S~lvIiTAGarq~~gesRL~lvQrNV~ifK~iip~lv~y-Spd~~llvvSNPVDilTYv~wKLS-g 152 (332)
T KOG1495|consen 75 PNVVASKDYSVSANSKLVIITAGARQSEGESRLDLVQRNVDIFKAIIPALVKY-SPDCILLVVSNPVDILTYVTWKLS-G 152 (332)
T ss_pred CceEecCcccccCCCcEEEEecCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhc-CCCeEEEEecCchHHHHHHHHHHc-C
Confidence 3333 348999999999999999988999999999999999999999999999 899999999999999999999998 6
Q ss_pred CCC-CeEEecCchhHHHHHHHHHHHhCCCcccccceEEEeccCCCcccccccceEcCeehhhhhhhccc--c---hHHHH
Q 019713 239 IPA-KNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKW--L---EEGFT 312 (337)
Q Consensus 239 ~p~-kvIG~gT~LDs~R~~~~lA~~lgv~~~~V~~v~V~GnHG~t~vp~~S~a~V~G~pl~e~i~~~~~--~---~~e~~ 312 (337)
+|+ |+||.||.||++|||+.++++||++|.++++ +|+|||||+.+|.||.+.|.|.++.++.++-.. + .+|+.
T Consensus 153 fP~nRViGsGcnLDsaRFryLi~~~Lg~~pss~hg-wIiGEHGdSsV~vWSgvniAGv~l~~l~~~~~t~~d~e~w~eih 231 (332)
T KOG1495|consen 153 FPKNRVIGSGCNLDSARFRYLIGNRLGVHPSSCHG-WIIGEHGDSSVPVWSGVNIAGVSLKDLNPDLGTDYDPENWKEIH 231 (332)
T ss_pred CcccceeccCcCccHHHHHHHHHHHhCCCcccceE-EEeeccCCccceecccccccceEHhHhChhhcCCCCHHHHHHHH
Confidence 887 8999999999999999999999999999996 999999999999999999999999998765221 1 13566
Q ss_pred HHHHhccCcc
Q 019713 313 ETIQKVRLVD 322 (337)
Q Consensus 313 ~~v~~~g~~~ 322 (337)
++|...+++.
T Consensus 232 K~v~~sayev 241 (332)
T KOG1495|consen 232 KQVVDSAYEV 241 (332)
T ss_pred HHHHHHHHHH
Confidence 6666666554
No 23
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=100.00 E-value=7.9e-45 Score=349.71 Aligned_cols=206 Identities=25% Similarity=0.251 Sum_probs=175.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEec-Cc--ccccCCCc
Q 019713 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI-NP--YELFEDAE 174 (337)
Q Consensus 98 KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t-~~--~eal~dAD 174 (337)
||+||||+|+||+++|+.|+.+++..| |+|+|++. ++|++|||+|+.. ..++..++ ++ +++++|||
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~e-----lvL~Di~~----a~g~a~DL~~~~~--~~~i~~~~~~~~~~~~~~daD 69 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSE-----LSLYDIAG----AAGVAADLSHIPT--AASVKGFSGEEGLENALKGAD 69 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcE-----EEEecCCC----CcEEEchhhcCCc--CceEEEecCCCchHHHcCCCC
Confidence 799999779999999999999988754 55666543 6799999999762 23444322 33 89999999
Q ss_pred EEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchh----HHHHHHHHCCCCCC-CeEEecCc
Q 019713 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNT----NALICLKNAPSIPA-KNFHALTR 249 (337)
Q Consensus 175 vVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~----~t~i~~k~s~~~p~-kvIG~gT~ 249 (337)
+||+++|.||+||++|+|++..|.+|++++++.|+++ +|++++|++|||+|+ +|+++++.+ ++|+ |+||+++
T Consensus 70 ivvitaG~~~~~g~~R~dll~~N~~I~~~i~~~i~~~-~p~~iiivvsNPvDv~~~i~t~~~~~~s-g~p~~rViG~g~- 146 (312)
T TIGR01772 70 VVVIPAGVPRKPGMTRDDLFNVNAGIVKDLVAAVAES-CPKAMILVITNPVNSTVPIAAEVLKKKG-VYDPNKLFGVTT- 146 (312)
T ss_pred EEEEeCCCCCCCCccHHHHHHHhHHHHHHHHHHHHHh-CCCeEEEEecCchhhHHHHHHHHHHHhc-CCChHHEEeeec-
Confidence 9999999999999999999999999999999999999 799999999999998 888888887 6776 7899986
Q ss_pred hhHHHHHHHHHHHhCCCcccccceEEEeccCC-CcccccccceEcCeehhhhhhhcccchHHHHHHHHhccCcccce
Q 019713 250 LDENRAKCQLALKAGVFYDKVSNMTIWGNHST-TQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLVDNFT 325 (337)
Q Consensus 250 LDs~R~~~~lA~~lgv~~~~V~~v~V~GnHG~-t~vp~~S~a~V~G~pl~e~i~~~~~~~~e~~~~v~~~g~~~~~~ 325 (337)
|||+|++++||+++|+++++|+. |||||||+ +|||+||++++ .++ +.++ ..+++.++++++||++-..
T Consensus 147 LDsaR~r~~la~~l~v~~~~v~~-~ViGeHg~~s~vp~~S~~~~--~~~---~~~~--~~~~i~~~v~~~g~~Ii~~ 215 (312)
T TIGR01772 147 LDIVRANTFVAELKGKDPMEVNV-PVIGGHSGETIIPLISQCPG--KVL---FTED--QLEALIHRIQNAGTEVVKA 215 (312)
T ss_pred chHHHHHHHHHHHhCCCHHHeEE-EEEEecCCCccccccccccc--cCC---CCHH--HHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999995 99999987 99999999984 333 2222 2578999999999987664
No 24
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=100.00 E-value=2.2e-44 Score=346.49 Aligned_cols=224 Identities=23% Similarity=0.328 Sum_probs=194.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEe-cCcccccCCCcE
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-INPYELFEDAEW 175 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-t~~~eal~dADv 175 (337)
|||+|+||+|.+|+++++.|+.++++++ +.++|++.+.+++++.++|++|+.........++ ++++++++|||+
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~-----v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~~~d~~~l~~aDi 75 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKE-----INLISRPKSLEKLKGLRLDIYDALAAAGIDAEIKISSDLSDVAGSDI 75 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCE-----EEEEECcccccccccccchhhhchhccCCCcEEEECCCHHHhCCCCE
Confidence 6999999779999999999999998754 4455664455899999999999753332222332 345889999999
Q ss_pred EEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHHHHHHHHCCCCCC-CeEEecCchhHHH
Q 019713 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDENR 254 (337)
Q Consensus 176 VIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t~i~~k~s~~~p~-kvIG~gT~LDs~R 254 (337)
||+++|.|+++|++|.+++..|+++++++++.|+++ +|+++||+++||+|++|++++++++ +|+ |+||+||.||++|
T Consensus 76 Viitag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~-~~~~~viv~~npvd~~t~~~~~~~g-~~~~~viG~gt~LDs~R 153 (309)
T cd05294 76 VIITAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEF-APDTKILVVTNPVDVMTYKALKESG-FDKNRVFGLGTHLDSLR 153 (309)
T ss_pred EEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEeCCchHHHHHHHHHhcC-CCHHHEeeccchHHHHH
Confidence 999999999999999999999999999999999998 6999999999999999999999995 776 7899999999999
Q ss_pred HHHHHHHHhCCCcccccceEEEeccCCCcccccccceEcCeehhhhhhhcccchHHHHHHHHhccCcccceehe
Q 019713 255 AKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLVDNFTLIL 328 (337)
Q Consensus 255 ~~~~lA~~lgv~~~~V~~v~V~GnHG~t~vp~~S~a~V~G~pl~e~i~~~~~~~~e~~~~v~~~g~~~~~~l~~ 328 (337)
++++||+++++++.+|++ +|+||||++|||+||+++|+|+|+.+++..+.+..+++.++++++||+.....++
T Consensus 154 ~~~~la~~l~v~~~~v~~-~viGeHg~s~~~~~S~~~i~g~~~~~~~~~~~~~~~~i~~~v~~~g~~i~~~kg~ 226 (309)
T cd05294 154 FKVAIAKHFNVHISEVHT-RIIGEHGDSMVPLISSTSIGGIPIKRFPEYKDFDVEKIVETVKNAGQNIISLKGG 226 (309)
T ss_pred HHHHHHHHHCcChHHeEE-EEEecCCCceEeeeeecEECCEEHHHhhcccHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999996 8999999999999999999999999987543456788999999999887554443
No 25
>PTZ00117 malate dehydrogenase; Provisional
Probab=100.00 E-value=1.1e-43 Score=343.15 Aligned_cols=216 Identities=25% Similarity=0.330 Sum_probs=188.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEe-cCcccccCCC
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-INPYELFEDA 173 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-t~~~eal~dA 173 (337)
+.+||+|||| |+||+++++.++..++ .+ + .|+|+ ++++++|+++|+.|+.........+. ++++++++||
T Consensus 4 ~~~KI~IIGa-G~vG~~ia~~l~~~~~-~~---l--~L~Di--~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~~~l~~A 74 (319)
T PTZ00117 4 KRKKISMIGA-GQIGSTVALLILQKNL-GD---V--VLYDV--IKGVPQGKALDLKHFSTLVGSNINILGTNNYEDIKDS 74 (319)
T ss_pred CCcEEEEECC-CHHHHHHHHHHHHCCC-Ce---E--EEEEC--CCccchhHHHHHhhhccccCCCeEEEeCCCHHHhCCC
Confidence 4569999996 9999999999999886 32 4 45544 55678899999999863332233443 4678899999
Q ss_pred cEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHHHHHHHHCCCCCC-CeEEecCchhH
Q 019713 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDE 252 (337)
Q Consensus 174 DvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t~i~~k~s~~~p~-kvIG~gT~LDs 252 (337)
|+||+++|.|+++|++|.|++..|.++++++++.|+++ +|++|+|++|||+|++|+++++.+ ++|+ |+||+||.||+
T Consensus 75 DiVVitag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~-~p~a~vivvsNP~di~t~~~~~~s-~~p~~rviG~gt~lds 152 (319)
T PTZ00117 75 DVVVITAGVQRKEEMTREDLLTINGKIMKSVAESVKKY-CPNAFVICVTNPLDCMVKVFQEKS-GIPSNKICGMAGVLDS 152 (319)
T ss_pred CEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEecChHHHHHHHHHHhh-CCCcccEEEecchHHH
Confidence 99999999999999999999999999999999999999 799999999999999999999987 6875 88999999999
Q ss_pred HHHHHHHHHHhCCCcccccceEEEeccCCCcccccccceEcCeehhhhhhhcccc---hHHHHHHHHhccCcc
Q 019713 253 NRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWL---EEGFTETIQKVRLVD 322 (337)
Q Consensus 253 ~R~~~~lA~~lgv~~~~V~~v~V~GnHG~t~vp~~S~a~V~G~pl~e~i~~~~~~---~~e~~~~v~~~g~~~ 322 (337)
+|++++||+++|+++++|+. +|+||||++|+|+||+++|+|+|+.+++++..|. .+++.++++++|++.
T Consensus 153 ~R~~~~la~~l~v~~~~v~~-~viGeHg~~~v~~~s~~~v~g~p~~~~~~~~~~~~~~~~~i~~~v~~~g~~i 224 (319)
T PTZ00117 153 SRFRCNLAEKLGVSPGDVSA-VVIGGHGDLMVPLPRYCTVNGIPLSDFVKKGAITEKEINEIIKKTRNMGGEI 224 (319)
T ss_pred HHHHHHHHHHhCCCcccceE-EEeecCCCcEEeceeeceECCEEHHHHhhccccCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999996 8999999999999999999999999998765564 356888999888875
No 26
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=1.5e-43 Score=340.58 Aligned_cols=217 Identities=24% Similarity=0.330 Sum_probs=192.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcEE
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADvV 176 (337)
|||+|||+ |.||+++++.|+..++..+ +.| + |+++++++|.++|+.|+. ++..+..+.++++++++|||+|
T Consensus 1 mkI~IIGa-G~VG~~~a~~l~~~g~~~e---v~l--~--D~~~~~~~g~a~dl~~~~-~~~~~~~i~~~d~~~l~~aDiV 71 (308)
T cd05292 1 MKVAIVGA-GFVGSTTAYALLLRGLASE---IVL--V--DINKAKAEGEAMDLAHGT-PFVKPVRIYAGDYADCKGADVV 71 (308)
T ss_pred CEEEEECC-CHHHHHHHHHHHHcCCCCE---EEE--E--ECCchhhhhHHHHHHccc-cccCCeEEeeCCHHHhCCCCEE
Confidence 58999995 9999999999999988654 544 3 556778899999999986 4444456667789999999999
Q ss_pred EEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHHHHHHHHCCCCCC-CeEEecCchhHHHH
Q 019713 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDENRA 255 (337)
Q Consensus 177 Iitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t~i~~k~s~~~p~-kvIG~gT~LDs~R~ 255 (337)
|++++.|+++|++|.+++.+|+++++++++.|+++ +|++++++++||+|++|+++++.+ ++|+ |+||+||.||++|+
T Consensus 72 iita~~~~~~~~~r~dl~~~n~~i~~~~~~~l~~~-~~~giiiv~tNP~d~~~~~~~~~s-g~p~~~viG~gt~LDs~R~ 149 (308)
T cd05292 72 VITAGANQKPGETRLDLLKRNVAIFKEIIPQILKY-APDAILLVVTNPVDVLTYVAYKLS-GLPPNRVIGSGTVLDTARF 149 (308)
T ss_pred EEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEecCcHHHHHHHHHHHH-CcCHHHeecccchhhHHHH
Confidence 99999999999999999999999999999999999 699999999999999999999998 6877 78999999999999
Q ss_pred HHHHHHHhCCCcccccceEEEeccCCCcccccccceEcCeehhhhhhhc--c---cchHHHHHHHHhccCcccce
Q 019713 256 KCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDH--K---WLEEGFTETIQKVRLVDNFT 325 (337)
Q Consensus 256 ~~~lA~~lgv~~~~V~~v~V~GnHG~t~vp~~S~a~V~G~pl~e~i~~~--~---~~~~e~~~~v~~~g~~~~~~ 325 (337)
+++||+++++++.+|++ +||||||++|+|+||+++|+|+|+.+++.+. . +..+++.++++++||+.-..
T Consensus 150 ~~~la~~~~v~~~~v~~-~viGeHg~~~~~~~S~~~v~g~~~~~~~~~~~~~~~~~~~~~l~~~v~~~g~~ii~~ 223 (308)
T cd05292 150 RYLLGEHLGVDPRSVHA-YIIGEHGDSEVAVWSSANIGGVPLDEFCKLCGRPFDEEVREEIFEEVRNAAYEIIER 223 (308)
T ss_pred HHHHHHHhCCCccceec-eeeccCCCcEEecceeeeECCEEHHHHhhhcccccCHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999996 8999999999999999999999999987542 1 33567899999999887443
No 27
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=100.00 E-value=4.9e-43 Score=336.68 Aligned_cols=213 Identities=24% Similarity=0.337 Sum_probs=185.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCc--ccEEEecCcccccCCCc
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLL--REVKIGINPYELFEDAE 174 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~--~~v~i~t~~~eal~dAD 174 (337)
+||+|||+ |.||+++|+.++..++. + |.| +|+ +++..+|.++|+.|...... .+++. ++++++++|||
T Consensus 2 ~KV~VIGa-G~vG~~iA~~la~~g~~-~---Vvl--vDi--~~~l~~g~a~d~~~~~~~~~~~~~i~~-t~d~~~~~~aD 71 (305)
T TIGR01763 2 KKISVIGA-GFVGATTAFRLAEKELA-D---LVL--LDV--VEGIPQGKALDMYEASPVGGFDTKVTG-TNNYADTANSD 71 (305)
T ss_pred CEEEEECc-CHHHHHHHHHHHHcCCC-e---EEE--EeC--CCChhHHHHHhhhhhhhccCCCcEEEe-cCCHHHhCCCC
Confidence 69999995 99999999999998874 2 544 444 56678889999988653222 23443 46778899999
Q ss_pred EEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHHHHHHHHCCCCCC-CeEEecCchhHH
Q 019713 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDEN 253 (337)
Q Consensus 175 vVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t~i~~k~s~~~p~-kvIG~gT~LDs~ 253 (337)
+||+++|.|+++|++|+|++..|.+++++++++|.++ +|++++|++|||+|+||+++++++ ++|+ |+||+||.|||+
T Consensus 72 iVIitag~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~-~p~~~iIv~tNP~di~t~~~~~~s-g~~~~rviG~g~~lds~ 149 (305)
T TIGR01763 72 IVVITAGLPRKPGMSREDLLSMNAGIVREVTGRIMEH-SPNPIIVVVSNPLDAMTYVAWQKS-GFPKERVIGQAGVLDSA 149 (305)
T ss_pred EEEEcCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEecCcHHHHHHHHHHHH-CcCHHHEEEeccchHHH
Confidence 9999999999999999999999999999999999998 799999999999999999999998 5776 889999999999
Q ss_pred HHHHHHHHHhCCCcccccceEEEeccCCCcccccccceEcCeehhhhhhhcccchHHHHHHHHhccCcccc
Q 019713 254 RAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLVDNF 324 (337)
Q Consensus 254 R~~~~lA~~lgv~~~~V~~v~V~GnHG~t~vp~~S~a~V~G~pl~e~i~~~~~~~~e~~~~v~~~g~~~~~ 324 (337)
|+++.||+++++++++|+. +||||||++|+|+||+++|+|+|+.+++.++. .+++.++++++|++.-.
T Consensus 150 R~~~~la~~l~v~~~~v~~-~v~GeHg~s~~~~wS~~~i~g~~~~~~~~~~~--~~~l~~~v~~~g~~ii~ 217 (305)
T TIGR01763 150 RFRTFIAMELGVSVQDVTA-CVLGGHGDAMVPLVRYSTVAGIPVADLISAER--IAEIVERTRKGGGEIVN 217 (305)
T ss_pred HHHHHHHHHhCcCHHHeee-eEEecCCCcEEeeeeeeEECCEEHHHhcCHHH--HHHHHHHHHHHHHHHHH
Confidence 9999999999999999996 89999999999999999999999999875432 47889999988876643
No 28
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=100.00 E-value=9.7e-43 Score=336.75 Aligned_cols=221 Identities=21% Similarity=0.265 Sum_probs=190.0
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEe-cCcccccC
Q 019713 93 WKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-INPYELFE 171 (337)
Q Consensus 93 ~~~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-t~~~eal~ 171 (337)
|.+.+||+|||| |.||+++++.++..++. .++|+|+ ++++++|.++|+.|.........++. ++++++++
T Consensus 3 ~~~~~KI~IIGa-G~vG~~ia~~la~~gl~------~i~LvDi--~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~~~l~ 73 (321)
T PTZ00082 3 MIKRRKISLIGS-GNIGGVMAYLIVLKNLG------DVVLFDI--VKNIPQGKALDISHSNVIAGSNSKVIGTNNYEDIA 73 (321)
T ss_pred CCCCCEEEEECC-CHHHHHHHHHHHhCCCC------eEEEEeC--CCchhhHHHHHHHhhhhccCCCeEEEECCCHHHhC
Confidence 456689999995 99999999999998873 1445544 55677899999999763332233443 46789999
Q ss_pred CCcEEEEecccCCCCCC-----chhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHHHHHHHHCCCCCC-CeEE
Q 019713 172 DAEWALLIGAKPRGPGM-----ERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFH 245 (337)
Q Consensus 172 dADvVIitag~prk~g~-----~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t~i~~k~s~~~p~-kvIG 245 (337)
|||+||+++|.|++||+ +|.+++..|.+++++++++|+++ +|++++|++|||+|++++++++.+ ++|+ |+||
T Consensus 74 ~aDiVI~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~-~p~a~~iv~sNP~di~t~~~~~~s-g~p~~rviG 151 (321)
T PTZ00082 74 GSDVVIVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKY-CPNAFVIVITNPLDVMVKLLQEHS-GLPKNKVCG 151 (321)
T ss_pred CCCEEEECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEecCcHHHHHHHHHHhc-CCChhhEEE
Confidence 99999999999999999 99999999999999999999999 699999999999999999999988 6774 8899
Q ss_pred ecCchhHHHHHHHHHHHhCCCcccccceEEEeccCCCcccccccceEcCeehhhhhhhccc---chHHHHHHHHhccCcc
Q 019713 246 ALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKW---LEEGFTETIQKVRLVD 322 (337)
Q Consensus 246 ~gT~LDs~R~~~~lA~~lgv~~~~V~~v~V~GnHG~t~vp~~S~a~V~G~pl~e~i~~~~~---~~~e~~~~v~~~g~~~ 322 (337)
+||.||++|+++.||+++|+++++|+. +|+||||++|||+||+++|+|.|+.++++...+ ..+++.++++++||+.
T Consensus 152 lgt~lds~R~~~~la~~l~v~~~~v~~-~viGeHg~s~v~~~S~~~i~g~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~i 230 (321)
T PTZ00082 152 MAGVLDSSRLRTYIAEKLGVNPRDVHA-SVIGAHGDKMVPLPRYVTVGGIPLSEFIKKGLITQEEIDEIVERTRNTGKEI 230 (321)
T ss_pred ecCcccHHHHHHHHHHHhCCCccccee-eEEecCCCceEecceeeEECCEEHHHhhhcccCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999996 899999999999999999999999998754212 2467889999999877
Q ss_pred cce
Q 019713 323 NFT 325 (337)
Q Consensus 323 ~~~ 325 (337)
...
T Consensus 231 ~~~ 233 (321)
T PTZ00082 231 VDL 233 (321)
T ss_pred Hhh
Confidence 553
No 29
>PRK06223 malate dehydrogenase; Reviewed
Probab=100.00 E-value=3.5e-42 Score=329.88 Aligned_cols=215 Identities=23% Similarity=0.336 Sum_probs=186.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEe-cCcccccCCCc
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-INPYELFEDAE 174 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-t~~~eal~dAD 174 (337)
|+||+|||| |.||+++++.++..++. + +. |+|+ ++++++|.++|+.|.........+++ ++++++++|||
T Consensus 2 ~~KI~VIGa-G~vG~~ia~~la~~~~~-e---v~--L~D~--~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~~~~~~aD 72 (307)
T PRK06223 2 RKKISIIGA-GNVGATLAHLLALKELG-D---VV--LFDI--VEGVPQGKALDIAEAAPVEGFDTKITGTNDYEDIAGSD 72 (307)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCe-E---EE--EEEC--CCchhHHHHHHHHhhhhhcCCCcEEEeCCCHHHHCCCC
Confidence 579999996 99999999999988764 3 44 4444 66788999999998764333333443 45678999999
Q ss_pred EEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHHHHHHHHCCCCCC-CeEEecCchhHH
Q 019713 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDEN 253 (337)
Q Consensus 175 vVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t~i~~k~s~~~p~-kvIG~gT~LDs~ 253 (337)
+||+++|.|+++|++|.+++.+|+++++++++.|+++ +|++++|++|||+|++|+++++++ ++|+ |+||+||.||++
T Consensus 73 iVii~~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~-~~~~~viv~tNP~d~~~~~~~~~s-~~~~~~viG~gt~lds~ 150 (307)
T PRK06223 73 VVVITAGVPRKPGMSRDDLLGINAKIMKDVAEGIKKY-APDAIVIVVTNPVDAMTYVALKES-GFPKNRVIGMAGVLDSA 150 (307)
T ss_pred EEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEecCcHHHHHHHHHHHh-CCCcccEEEeCCCcHHH
Confidence 9999999999999999999999999999999999998 699999999999999999999998 6775 789999999999
Q ss_pred HHHHHHHHHhCCCcccccceEEEeccCCCcccccccceEcCeehhhhhhhcccchHHHHHHHHhccCcccc
Q 019713 254 RAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLVDNF 324 (337)
Q Consensus 254 R~~~~lA~~lgv~~~~V~~v~V~GnHG~t~vp~~S~a~V~G~pl~e~i~~~~~~~~e~~~~v~~~g~~~~~ 324 (337)
|++++||+++++++++|++ +|+||||++++|+||+++|+|.|+.+++. ++| .+++.+.++++|++.-.
T Consensus 151 r~~~~la~~l~v~~~~v~~-~viGehg~s~~p~~S~~~v~g~~~~~~~~-~~~-~~~l~~~v~~~~~~ii~ 218 (307)
T PRK06223 151 RFRTFIAEELNVSVKDVTA-FVLGGHGDSMVPLVRYSTVGGIPLEDLLS-KEK-LDEIVERTRKGGAEIVG 218 (307)
T ss_pred HHHHHHHHHhCcChhhCcc-cEEcCCCCcceEchhhCEECCEEHHHhCC-hHH-HHHHHHHHHHHHHHHHh
Confidence 9999999999999999996 89999999999999999999999999853 344 46788888888876643
No 30
>PTZ00325 malate dehydrogenase; Provisional
Probab=100.00 E-value=4.3e-41 Score=324.86 Aligned_cols=211 Identities=28% Similarity=0.269 Sum_probs=180.6
Q ss_pred hccCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEec--Cc-cc
Q 019713 92 SWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI--NP-YE 168 (337)
Q Consensus 92 ~~~~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t--~~-~e 168 (337)
+..+|.||+||||+|+||+++++.|+..++..+ |+|+|+ ++++|+++||.|+.. ...+...+ ++ ++
T Consensus 4 ~~~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~e-----lvL~Di----~~~~g~a~Dl~~~~~--~~~v~~~td~~~~~~ 72 (321)
T PTZ00325 4 SALKMFKVAVLGAAGGIGQPLSLLLKQNPHVSE-----LSLYDI----VGAPGVAADLSHIDT--PAKVTGYADGELWEK 72 (321)
T ss_pred cCCCCCEEEEECCCCHHHHHHHHHHhcCCCCCE-----EEEEec----CCCcccccchhhcCc--CceEEEecCCCchHH
Confidence 456788999999779999999999998887654 556665 467899999999773 22343222 23 89
Q ss_pred ccCCCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHHHHHH----HHCCCCCC-Ce
Q 019713 169 LFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICL----KNAPSIPA-KN 243 (337)
Q Consensus 169 al~dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t~i~~----k~s~~~p~-kv 243 (337)
+++|||+||+++|.|++||++|.+++..|++++++++++|+++ +|+++|+++|||+|+++++++ +.+ ++|+ ++
T Consensus 73 ~l~gaDvVVitaG~~~~~~~tR~dll~~N~~i~~~i~~~i~~~-~~~~iviv~SNPvdv~~~~~~~~~~~~s-g~p~~~v 150 (321)
T PTZ00325 73 ALRGADLVLICAGVPRKPGMTRDDLFNTNAPIVRDLVAAVASS-APKAIVGIVSNPVNSTVPIAAETLKKAG-VYDPRKL 150 (321)
T ss_pred HhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEecCcHHHHHHHHHhhhhhcc-CCChhhe
Confidence 9999999999999999999999999999999999999999998 899999999999999999995 666 5766 78
Q ss_pred EEecCchhHHHHHHHHHHHhCCCcccccceEEEeccCC-CcccccccceEcCeehhhhhhhcccchHHHHHHHHhccCcc
Q 019713 244 FHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHST-TQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLVD 322 (337)
Q Consensus 244 IG~gT~LDs~R~~~~lA~~lgv~~~~V~~v~V~GnHG~-t~vp~~S~a~V~G~pl~e~i~~~~~~~~e~~~~v~~~g~~~ 322 (337)
||+++ |||+|++++||+++|++|++|+. |||||||+ +|||+||++ |.|+.+ + ..+++.++++++||++
T Consensus 151 iG~g~-LDs~R~r~~la~~l~v~~~~V~~-~VlGeHGd~s~v~~~S~~---g~~l~~----~--~~~~i~~~v~~~g~~I 219 (321)
T PTZ00325 151 FGVTT-LDVVRARKFVAEALGMNPYDVNV-PVVGGHSGVTIVPLLSQT---GLSLPE----E--QVEQITHRVQVGGDEV 219 (321)
T ss_pred eechh-HHHHHHHHHHHHHhCcChhheEE-EEEeecCCcccccchhcc---CCCCCH----H--HHHHHHHHHHHHHHHH
Confidence 99986 99999999999999999999995 99999999 899999999 888742 1 2567999999999887
Q ss_pred ccee
Q 019713 323 NFTL 326 (337)
Q Consensus 323 ~~~l 326 (337)
....
T Consensus 220 i~~k 223 (321)
T PTZ00325 220 VKAK 223 (321)
T ss_pred Hhcc
Confidence 6543
No 31
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=100.00 E-value=1.5e-40 Score=318.19 Aligned_cols=212 Identities=25% Similarity=0.346 Sum_probs=183.5
Q ss_pred EEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEe-cCcccccCCCcEEE
Q 019713 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-INPYELFEDAEWAL 177 (337)
Q Consensus 99 I~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-t~~~eal~dADvVI 177 (337)
|+|||| |.||+++++.++..++. + |. |+|+ ++++++|.++|+.|.........++. ++++++++|||+||
T Consensus 1 I~IIGa-G~vG~~ia~~la~~~l~-e---V~--L~Di--~e~~~~g~~~dl~~~~~~~~~~~~I~~t~d~~~l~dADiVI 71 (300)
T cd01339 1 ISIIGA-GNVGATLAQLLALKELG-D---VV--LLDI--VEGLPQGKALDISQAAPILGSDTKVTGTNDYEDIAGSDVVV 71 (300)
T ss_pred CEEECC-CHHHHHHHHHHHhCCCc-E---EE--EEeC--CCcHHHHHHHHHHHhhhhcCCCeEEEEcCCHHHhCCCCEEE
Confidence 689996 99999999999988874 3 44 4555 45688899999998753332223332 34589999999999
Q ss_pred EecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHHHHHHHHCCCCCC-CeEEecCchhHHHHH
Q 019713 178 LIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDENRAK 256 (337)
Q Consensus 178 itag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t~i~~k~s~~~p~-kvIG~gT~LDs~R~~ 256 (337)
+++|.|+++|++|.+++.+|.+++++++++|+++ +|++++|++|||+|++|+++++++ ++|+ |+||+||.||++|++
T Consensus 72 it~g~p~~~~~~r~e~~~~n~~i~~~i~~~i~~~-~p~~~iIv~sNP~di~t~~~~~~s-~~~~~rviGlgt~lds~r~~ 149 (300)
T cd01339 72 ITAGIPRKPGMSRDDLLGTNAKIVKEVAENIKKY-APNAIVIVVTNPLDVMTYVAYKAS-GFPRNRVIGMAGVLDSARFR 149 (300)
T ss_pred EecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEecCcHHHHHHHHHHHh-CCCHHHEEEecchHHHHHHH
Confidence 9999999999999999999999999999999998 699999999999999999999998 6765 889999999999999
Q ss_pred HHHHHHhCCCcccccceEEEeccCCCcccccccceEcCeehhhhhhhcccchHHHHHHHHhccCcccc
Q 019713 257 CQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLVDNF 324 (337)
Q Consensus 257 ~~lA~~lgv~~~~V~~v~V~GnHG~t~vp~~S~a~V~G~pl~e~i~~~~~~~~e~~~~v~~~g~~~~~ 324 (337)
.+||+++++++++|++ +|+||||++|+|+||+++|+|.|+.+++.+++ .+++.++++++|++.-.
T Consensus 150 ~~la~~l~v~~~~v~~-~v~G~hg~~~~~~~s~~~v~g~~~~~~~~~~~--~~~~~~~v~~~~~~ii~ 214 (300)
T cd01339 150 YFIAEELGVSVKDVQA-MVLGGHGDTMVPLPRYSTVGGIPLTELITKEE--IDEIVERTRNGGAEIVN 214 (300)
T ss_pred HHHHHHhCCCccceEE-EEEeCCCCcceecceecEECCEEHHHhcChHH--HHHHHHHHHHHHHHHHh
Confidence 9999999999999996 89999999999999999999999999875543 47888888888877644
No 32
>PLN00106 malate dehydrogenase
Probab=100.00 E-value=1.9e-40 Score=320.58 Aligned_cols=208 Identities=26% Similarity=0.289 Sum_probs=176.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCc---ccccCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINP---YELFED 172 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~---~eal~d 172 (337)
+.||+||||+|+||+++++.|+.++++++ |+|+|++. ++|+++||.|+.... .+...+++ +++++|
T Consensus 18 ~~KV~IiGaaG~VG~~~a~~l~~~~~~~e-----l~L~Di~~----~~g~a~Dl~~~~~~~--~i~~~~~~~d~~~~l~~ 86 (323)
T PLN00106 18 GFKVAVLGAAGGIGQPLSLLMKMNPLVSE-----LHLYDIAN----TPGVAADVSHINTPA--QVRGFLGDDQLGDALKG 86 (323)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCCE-----EEEEecCC----CCeeEchhhhCCcCc--eEEEEeCCCCHHHHcCC
Confidence 46999999779999999999999999864 55666543 789999999987432 33321233 899999
Q ss_pred CcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCch----hHHHHHHHHCCCCCC-CeEEec
Q 019713 173 AEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN----TNALICLKNAPSIPA-KNFHAL 247 (337)
Q Consensus 173 ADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd----~~t~i~~k~s~~~p~-kvIG~g 247 (337)
||+||+++|.|++||++|.|++..|.+|++++++.++++ +|+++||++|||+| ++++++++.+ ++|+ ++||++
T Consensus 87 aDiVVitAG~~~~~g~~R~dll~~N~~i~~~i~~~i~~~-~p~aivivvSNPvD~~~~i~t~~~~~~s-~~p~~~viG~~ 164 (323)
T PLN00106 87 ADLVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEAVAKH-CPNALVNIISNPVNSTVPIAAEVLKKAG-VYDPKKLFGVT 164 (323)
T ss_pred CCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEeCCCccccHHHHHHHHHHcC-CCCcceEEEEe
Confidence 999999999999999999999999999999999999999 69999999999999 8999889987 5665 788998
Q ss_pred CchhHHHHHHHHHHHhCCCcccccceEEEeccCC-CcccccccceEcCeehhhhhhhcccchHHHHHHHHhccCcccce
Q 019713 248 TRLDENRAKCQLALKAGVFYDKVSNMTIWGNHST-TQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLVDNFT 325 (337)
Q Consensus 248 T~LDs~R~~~~lA~~lgv~~~~V~~v~V~GnHG~-t~vp~~S~a~V~G~pl~e~i~~~~~~~~e~~~~v~~~g~~~~~~ 325 (337)
+ ||++|+++++|+++|+++.+|+. +|+||||+ +|||+||++++. .+ +.++ ..+++.++++++||+....
T Consensus 165 ~-LDs~Rl~~~lA~~lgv~~~~V~~-~ViGeHg~~s~vp~~S~~~~~----~~-~~~~--~~~~i~~~v~~~g~~Ii~~ 234 (323)
T PLN00106 165 T-LDVVRANTFVAEKKGLDPADVDV-PVVGGHAGITILPLLSQATPK----VS-FTDE--EIEALTKRIQNGGTEVVEA 234 (323)
T ss_pred c-chHHHHHHHHHHHhCCChhheEE-EEEEeCCCccEeeehhcceec----cc-CCHH--HHHHHHHHHHHHHHHHHhC
Confidence 6 99999999999999999999996 99999965 999999999653 23 2111 2568999999999987664
No 33
>PRK05086 malate dehydrogenase; Provisional
Probab=100.00 E-value=8.4e-40 Score=315.17 Aligned_cols=208 Identities=25% Similarity=0.266 Sum_probs=174.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHH-cCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEe-cCc-ccccCCC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAA-GEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-INP-YELFEDA 173 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~-~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-t~~-~eal~dA 173 (337)
|||+||||+|.||+++++.|.. .+... ++.|+|. + +..+|+++|++|.. ....+... .++ +++++|+
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~-----el~L~d~--~-~~~~g~alDl~~~~--~~~~i~~~~~~d~~~~l~~~ 70 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGS-----ELSLYDI--A-PVTPGVAVDLSHIP--TAVKIKGFSGEDPTPALEGA 70 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCcc-----EEEEEec--C-CCCcceehhhhcCC--CCceEEEeCCCCHHHHcCCC
Confidence 6999999889999999999865 34432 3455554 3 23678899999852 11233321 234 7999999
Q ss_pred cEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHHHHHH----HHCCCCCC-CeEEecC
Q 019713 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICL----KNAPSIPA-KNFHALT 248 (337)
Q Consensus 174 DvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t~i~~----k~s~~~p~-kvIG~gT 248 (337)
|+||+++|.|+++|++|.+++..|+++++++++.|+++ +|+++|+++|||+|+||++++ +++ ++|+ |+||+|+
T Consensus 71 DiVIitaG~~~~~~~~R~dll~~N~~i~~~ii~~i~~~-~~~~ivivvsNP~D~~t~~~~~~~~~~s-g~p~~rvig~~~ 148 (312)
T PRK05086 71 DVVLISAGVARKPGMDRSDLFNVNAGIVKNLVEKVAKT-CPKACIGIITNPVNTTVAIAAEVLKKAG-VYDKNKLFGVTT 148 (312)
T ss_pred CEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEccCchHHHHHHHHHHHHHhc-CCCHHHEEeeec
Confidence 99999999999999999999999999999999999999 799999999999999999987 776 6776 7899986
Q ss_pred chhHHHHHHHHHHHhCCCcccccceEEEeccCC-CcccccccceEcCeehhhhhhhcccchHHHHHHHHhccCccccee
Q 019713 249 RLDENRAKCQLALKAGVFYDKVSNMTIWGNHST-TQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLVDNFTL 326 (337)
Q Consensus 249 ~LDs~R~~~~lA~~lgv~~~~V~~v~V~GnHG~-t~vp~~S~a~V~G~pl~e~i~~~~~~~~e~~~~v~~~g~~~~~~l 326 (337)
|||+|+++.||+++|+++++|+ .+||||||+ +|||+||++ +|.|+.+ + ..+++.++++++||++-...
T Consensus 149 -Lds~R~~~~ia~~l~~~~~~v~-~~v~GeHg~~s~~p~~S~~--~g~~l~~----~--~~~~i~~~v~~~g~~ii~~k 217 (312)
T PRK05086 149 -LDVIRSETFVAELKGKQPGEVE-VPVIGGHSGVTILPLLSQV--PGVSFTE----Q--EVADLTKRIQNAGTEVVEAK 217 (312)
T ss_pred -HHHHHHHHHHHHHhCCChhheE-EEEEEecCCCceecccccc--CCccCCH----H--HHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999 499999976 999999999 8999843 1 25679999999999876544
No 34
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=100.00 E-value=1.6e-38 Score=298.84 Aligned_cols=184 Identities=39% Similarity=0.525 Sum_probs=163.7
Q ss_pred EEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCC-cccEEEecCcccccCCCcEEE
Q 019713 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL-LREVKIGINPYELFEDAEWAL 177 (337)
Q Consensus 99 I~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~-~~~v~i~t~~~eal~dADvVI 177 (337)
|+||||+|.+|+++++.|+.++.. ....|.|+|+ +++++++.++|++|+..+. ..+++.++|.+++++|||+||
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~---~~~el~L~D~--~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~~aDiVv 75 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVL---LAIELVLYDI--DEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKDADVVI 75 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCC---cceEEEEEeC--CcccchHHHHHHHHhhhhccCcEEEECCchHHHhCCCCEEE
Confidence 689997699999999999998831 1234566655 5588999999999987554 346666555589999999999
Q ss_pred EecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHHHHHHHHCCCCCC-CeEEecCchhHHHHH
Q 019713 178 LIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDENRAK 256 (337)
Q Consensus 178 itag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t~i~~k~s~~~p~-kvIG~gT~LDs~R~~ 256 (337)
+++|.|+++|++|.+++.+|++++++++++|+++ +|++|+|++|||+|++|++++|++ ++|+ |+||.|| ||++|++
T Consensus 76 ~t~~~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~-~p~a~~i~~tNP~d~~t~~~~~~s-g~~~~kviG~~~-ld~~r~~ 152 (263)
T cd00650 76 ITAGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKY-SPDAWIIVVSNPVDIITYLVWRYS-GLPKEKVIGLGT-LDPIRFR 152 (263)
T ss_pred ECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEecCcHHHHHHHHHHHh-CCCchhEEEeec-chHHHHH
Confidence 9999999999999999999999999999999999 699999999999999999999998 6765 8899999 9999999
Q ss_pred HHHHHHhCCCcccccceEEEeccCCCcccccccce
Q 019713 257 CQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNAR 291 (337)
Q Consensus 257 ~~lA~~lgv~~~~V~~v~V~GnHG~t~vp~~S~a~ 291 (337)
+++|+++|+++++|+ .+|||+||++|+|+||+++
T Consensus 153 ~~la~~l~v~~~~v~-~~v~G~hg~~~~~~~s~~~ 186 (263)
T cd00650 153 RILAEKLGVDPDDVK-VYILGEHGGSQVPDWSTVR 186 (263)
T ss_pred HHHHHHhCCCccceE-EEEEEcCCCceEeccccch
Confidence 999999999999999 5999999999999999986
No 35
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=100.00 E-value=2.8e-33 Score=240.82 Aligned_cols=141 Identities=30% Similarity=0.450 Sum_probs=126.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcEE
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADvV 176 (337)
|||+||||+|+||+++++.|+.+++.+| |+|+ |.++++++|+++||+|+.++...++.++.+++++++|||+|
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~e-----i~L~--D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~~aDiv 73 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADE-----IVLI--DINEDKAEGEALDLSHASAPLPSPVRITSGDYEALKDADIV 73 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSE-----EEEE--ESSHHHHHHHHHHHHHHHHGSTEEEEEEESSGGGGTTESEE
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCc-----eEEe--ccCcccceeeehhhhhhhhhcccccccccccccccccccEE
Confidence 6999999779999999999999999865 4454 45667999999999999877667788888999999999999
Q ss_pred EEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHHHHHHHHCCCCCCCeEE
Q 019713 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFH 245 (337)
Q Consensus 177 Iitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t~i~~k~s~~~p~kvIG 245 (337)
|+++|.||+||++|.+++..|++++++++++|+++ +|+++++++|||+|++|++++++++..|+|+||
T Consensus 74 vitag~~~~~g~sR~~ll~~N~~i~~~~~~~i~~~-~p~~~vivvtNPvd~~t~~~~~~s~~~~~kviG 141 (141)
T PF00056_consen 74 VITAGVPRKPGMSRLDLLEANAKIVKEIAKKIAKY-APDAIVIVVTNPVDVMTYVAQKYSGFPPNKVIG 141 (141)
T ss_dssp EETTSTSSSTTSSHHHHHHHHHHHHHHHHHHHHHH-STTSEEEE-SSSHHHHHHHHHHHHTSSGGGEEE
T ss_pred EEeccccccccccHHHHHHHhHhHHHHHHHHHHHh-CCccEEEEeCCcHHHHHHHHHHhhCcCcccCcC
Confidence 99999999999999999999999999999999999 699999999999999999999999544448887
No 36
>KOG1494 consensus NAD-dependent malate dehydrogenase [Energy production and conversion]
Probab=99.97 E-value=1.2e-31 Score=249.21 Aligned_cols=217 Identities=26% Similarity=0.309 Sum_probs=175.7
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEec---Cccccc
Q 019713 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI---NPYELF 170 (337)
Q Consensus 94 ~~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t---~~~eal 170 (337)
....||+|.||+|-||+.+...|....+.++ |.|+|+. ...|++.||.|+... ..+.-.+ +.+.++
T Consensus 26 ~~~~KVAvlGAaGGIGQPLSLLlK~np~Vs~-----LaLYDi~----~~~GVaaDlSHI~T~--s~V~g~~g~~~L~~al 94 (345)
T KOG1494|consen 26 QRGLKVAVLGAAGGIGQPLSLLLKLNPLVSE-----LALYDIA----NTPGVAADLSHINTN--SSVVGFTGADGLENAL 94 (345)
T ss_pred cCcceEEEEecCCccCccHHHHHhcCcccce-----eeeeecc----cCCcccccccccCCC--CceeccCChhHHHHHh
Confidence 4567999999999999999999999998865 6667763 567999999998743 3344333 357899
Q ss_pred CCCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHHHHH---HHHCCCCCCCeEEec
Q 019713 171 EDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALIC---LKNAPSIPAKNFHAL 247 (337)
Q Consensus 171 ~dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t~i~---~k~s~~~p~kvIG~g 247 (337)
++||+||+-||.||||||+|.||+..|+.|+++++..+.++ ||++++.++|||+|....++ .|..+-++++.+...
T Consensus 95 ~~advVvIPAGVPRKPGMTRDDLFn~NAgIv~~l~~aia~~-cP~A~i~vIsNPVNstVPIaaevlKk~G~ydpkklfGV 173 (345)
T KOG1494|consen 95 KGADVVVIPAGVPRKPGMTRDDLFNINAGIVKTLAAAIAKC-CPNALILVISNPVNSTVPIAAEVLKKAGVYDPKKLFGV 173 (345)
T ss_pred cCCCEEEecCCCCCCCCCcHHHhhhcchHHHHHHHHHHHhh-CccceeEeecCcccccchHHHHHHHHcCCCCccceece
Confidence 99999999999999999999999999999999999999997 89999999999999866554 556667777666566
Q ss_pred CchhHHHHHHHHHHHhCCCc-ccccceEEEeccC-CCcccccccceEcCeehhhhhhhcccchHHHHHHHHhccCcc---
Q 019713 248 TRLDENRAKCQLALKAGVFY-DKVSNMTIWGNHS-TTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKVRLVD--- 322 (337)
Q Consensus 248 T~LDs~R~~~~lA~~lgv~~-~~V~~v~V~GnHG-~t~vp~~S~a~V~G~pl~e~i~~~~~~~~e~~~~v~~~g~~~--- 322 (337)
|.||..|++.++++.++++| ++++ +.|+|.|. .|.+|++|+++ |...+-.+ ..+.++.++|..|-+.
T Consensus 174 TtLDvVRA~tFv~~~~~~~p~~~v~-VPVIGGHaG~TIlPLlSQ~~----p~~~~~~~---~~~~Lt~RiQ~gGtEVV~A 245 (345)
T KOG1494|consen 174 TTLDVVRANTFVAEVLNLDPAEDVD-VPVIGGHAGITIIPLLSQCK----PPFRFTDD---EIEALTHRIQNGGTEVVKA 245 (345)
T ss_pred ehhhhhhHHHHHHHHhCCCchhcCC-cceecCcCCceEeeecccCC----CcccCCHH---HHHHHHHHHHhCCceEEEe
Confidence 88999999999999999999 4577 79999995 69999999986 33332211 2456788888877554
Q ss_pred -----cceeheee
Q 019713 323 -----NFTLILFV 330 (337)
Q Consensus 323 -----~~~l~~~~ 330 (337)
+.+|+|=|
T Consensus 246 KaGaGSATLSMAy 258 (345)
T KOG1494|consen 246 KAGAGSATLSMAY 258 (345)
T ss_pred ccCCCchhhhHHH
Confidence 45666644
No 37
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=99.96 E-value=2e-28 Score=244.91 Aligned_cols=221 Identities=17% Similarity=0.114 Sum_probs=160.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCC--CCceEEEeccccch-hhHHHhHHHhHhhhccCCcccEEEecCcccccCCC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGP--DQPIALKLLGSERS-LQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e--~~~v~L~L~d~d~~-~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dA 173 (337)
+||+|||| |+ +..+.|+.+-+-.. -..-+|.|+|+|.. .+.....+..+.+.. ....+++.++|..+|++||
T Consensus 1 ~KI~iIGg-GS---~~tp~li~~l~~~~~~l~~~ei~L~Did~~Rl~~v~~l~~~~~~~~-g~~~~v~~ttD~~~Al~gA 75 (425)
T cd05197 1 VKIAIIGG-GS---SFTPELVSGLLKTPEELPISEVTLYDIDEERLDIILTIAKRYVEEV-GADIKFEKTMDLEDAIIDA 75 (425)
T ss_pred CEEEEECC-ch---HhHHHHHHHHHcChhhCCCCEEEEEcCCHHHHHHHHHHHHHHHHhh-CCCeEEEEeCCHHHHhCCC
Confidence 69999997 54 44444433222111 11135667777643 222333444444333 2234788889999999999
Q ss_pred cEEEEe---ccc---------CCCCCC---c-----hhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHHHHHH
Q 019713 174 EWALLI---GAK---------PRGPGM---E-----RAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICL 233 (337)
Q Consensus 174 DvVIit---ag~---------prk~g~---~-----R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t~i~~ 233 (337)
|+||.+ ||. |.|.|. + ......+|+++++++++.|+++ +|+||+|++|||+|++|++++
T Consensus 76 DfVi~~irvGg~~~r~~De~Iplk~G~~gqeT~G~GG~~~alrni~ii~~i~~~i~~~-~P~a~lin~TNP~di~t~a~~ 154 (425)
T cd05197 76 DFVINQFRVGGLTYREKDEQIPLKYGVIGQETVGPGGTFSGLRQIPYVLDIARKXEKL-SPDAWYLNFTNPAGEVTEAVR 154 (425)
T ss_pred CEEEEeeecCChHHHHHHHhHHHHcCcccccccCcchhhhhhhhHHHHHHHHHHHHHh-CCCcEEEecCChHHHHHHHHH
Confidence 999986 332 334432 2 1234679999999999999999 799999999999999999999
Q ss_pred HHCCCCCCCeEEecCchhHHHHHHHHHHHhCCCcccccceEEEe-ccCCCcccccccceEcCeehhhhhhh----ccc--
Q 019713 234 KNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWG-NHSTTQVPDFLNARINGLPVKEIIKD----HKW-- 306 (337)
Q Consensus 234 k~s~~~p~kvIG~gT~LDs~R~~~~lA~~lgv~~~~V~~v~V~G-nHG~t~vp~~S~a~V~G~pl~e~i~~----~~~-- 306 (337)
+.+| ..|+||+|+. +.|+++.+|+.+|+++++|+. +++| ||| +|||+++++|+|+.+.+.+ +.+
T Consensus 155 ~~~p--~~rviG~c~~--~~r~~~~ia~~lgv~~~~v~~-~v~GlnHg----~~~s~~~~~G~~l~p~l~~~~~~~~~~~ 225 (425)
T cd05197 155 RYVP--PEKAVGLCNV--PIGVMEIVAKLLGESEEKVDW-QYAGLNHG----IWLNRVRYNGGDVTPKLDEWVEEKSKDW 225 (425)
T ss_pred HhCC--CCcEEEECCC--HHHHHHHHHHHhCCCHHHeEE-EEEeccCe----EeeEeEEECCeecHHHHHHHHhccCccc
Confidence 9752 2389999999 999999999999999999995 8999 996 9999999999999976542 111
Q ss_pred -chH-------HH-HHHHHhccCcccceeheeeee
Q 019713 307 -LEE-------GF-TETIQKVRLVDNFTLILFVMN 332 (337)
Q Consensus 307 -~~~-------e~-~~~v~~~g~~~~~~l~~~~~~ 332 (337)
... .+ .+..+..|.-|+.|+.|||+.
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~g~~p~~Yl~yy~~~ 260 (425)
T cd05197 226 KTENPFVDQLSPAAIDFYRFYGVLPNPYLRYYLSW 260 (425)
T ss_pred cccccccccccchHHHHHHhCCCcccCCccccCcc
Confidence 001 12 356777899999999999884
No 38
>PRK15076 alpha-galactosidase; Provisional
Probab=99.95 E-value=1.3e-27 Score=239.60 Aligned_cols=216 Identities=14% Similarity=0.114 Sum_probs=163.1
Q ss_pred CCEEEEEcCCCchHHHHHH--HHH-HcCCCCCCCceEEEeccccchhhHHH-hHHHhHhhhccCC--cccEEEecCcccc
Q 019713 96 MVNIAVSGAAGMIANHLLF--KLA-AGEVLGPDQPIALKLLGSERSLQALE-GVAMELEDSLFPL--LREVKIGINPYEL 169 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~--~L~-~~~l~~e~~~v~L~L~d~d~~~~~l~-g~a~DL~d~~~~~--~~~v~i~t~~~ea 169 (337)
|+||+|||| |.+|++.++ .++ ..++.+ ..+.|+|+ ++++++ +.++ +++..... ..+++.++|.+++
T Consensus 1 ~~KIaIIGa-Gsvg~~~~~~~~i~~~~~l~~----~evvLvDi--d~er~~~~~~l-~~~~~~~~~~~~~i~~ttD~~ea 72 (431)
T PRK15076 1 MPKITFIGA-GSTVFTKNLLGDILSVPALRD----AEIALMDI--DPERLEESEIV-ARKLAESLGASAKITATTDRREA 72 (431)
T ss_pred CcEEEEECC-CHHHhHHHHHHHHhhCccCCC----CEEEEECC--CHHHHHHHHHH-HHHHHHhcCCCeEEEEECCHHHH
Confidence 479999995 999999877 665 344433 24555655 445555 4545 55544222 2356666666899
Q ss_pred cCCCcEEEEecccC-CCCC--------------Cchhhh--------HHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCch
Q 019713 170 FEDAEWALLIGAKP-RGPG--------------MERAGL--------LDINGQIFAEQGKALNAVASRNVKVIVVGNPCN 226 (337)
Q Consensus 170 l~dADvVIitag~p-rk~g--------------~~R~dl--------l~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd 226 (337)
++|||+||++++.+ ++++ ++|.++ +.+|++++++++++|+++ +|+||+|++|||+|
T Consensus 73 l~dADfVv~ti~vg~~~~~~~~De~Iplk~G~~~~r~et~G~GG~~~~~r~i~~i~~i~~~i~~~-~p~a~iin~tNP~d 151 (431)
T PRK15076 73 LQGADYVINAIQVGGYEPCTVTDFEIPKKYGLRQTIGDTLGIGGIMRALRTIPVLLDICEDMEEV-CPDALLLNYVNPMA 151 (431)
T ss_pred hCCCCEEeEeeeeCCcchhhhhhhhhHHHcCCeeecccCcCccchhhhhhhHHHHHHHHHHHHHH-CCCeEEEEcCChHH
Confidence 99999999998876 5555 567788 899999999999999999 79999999999999
Q ss_pred hHHHHHHHHCCCCCCCeEEec-CchhHHHHHHHHHHHhCCCcccccceEEEe-ccCCCcccccccceEcCeehhhhhhhc
Q 019713 227 TNALICLKNAPSIPAKNFHAL-TRLDENRAKCQLALKAGVFYDKVSNMTIWG-NHSTTQVPDFLNARINGLPVKEIIKDH 304 (337)
Q Consensus 227 ~~t~i~~k~s~~~p~kvIG~g-T~LDs~R~~~~lA~~lgv~~~~V~~v~V~G-nHG~t~vp~~S~a~V~G~pl~e~i~~~ 304 (337)
++|+.++++ + +.|+||+| +.+|+. ..+|+.+|+++++|+. ++.| || +.|+.+++++|+++.+.+.+.
T Consensus 152 ivt~~~~~~-~--~~rviG~c~~~~~~~---~~ia~~l~v~~~~v~~-~~~GlNH----~~W~~~~~~~G~D~~p~l~~~ 220 (431)
T PRK15076 152 MNTWAMNRY-P--GIKTVGLCHSVQGTA---EQLARDLGVPPEELRY-RCAGINH----MAWYLELERKGEDLYPELRAA 220 (431)
T ss_pred HHHHHHhcC-C--CCCEEEECCCHHHHH---HHHHHHhCCCHHHeEE-EEEeecc----hhhheeeeECCcchHHHHHHH
Confidence 999998743 2 23899999 999986 8899999999999995 8999 99 999999999999998766431
Q ss_pred c-----cchHHH-HHHHHhccCccc-------ceeheeee
Q 019713 305 K-----WLEEGF-TETIQKVRLVDN-------FTLILFVM 331 (337)
Q Consensus 305 ~-----~~~~e~-~~~v~~~g~~~~-------~~l~~~~~ 331 (337)
. ...+.+ .+-.+.-|.-++ .|+.|||+
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~y~~~ 260 (431)
T PRK15076 221 AAEGQTRCQDKVRYEMLKRFGYFVTESSEHFAEYVPWFIK 260 (431)
T ss_pred HhccCchhcccccHHHHHHhCCCcccchhhhhhhhcccCc
Confidence 0 001112 244555666666 67777764
No 39
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=99.95 E-value=4e-27 Score=235.16 Aligned_cols=218 Identities=15% Similarity=0.095 Sum_probs=162.1
Q ss_pred CEEEEEcCCCchHHH--HHHHHHHc-CCCCCCCceEEEeccccchhhHHHh---HHHhHhhhccCCcccEEEecCccccc
Q 019713 97 VNIAVSGAAGMIANH--LLFKLAAG-EVLGPDQPIALKLLGSERSLQALEG---VAMELEDSLFPLLREVKIGINPYELF 170 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~--la~~L~~~-~l~~e~~~v~L~L~d~d~~~~~l~g---~a~DL~d~~~~~~~~v~i~t~~~eal 170 (337)
+||+|||| |.+ ++ +...|+.. .-++ .-+|.|+|+|. +++++. .+..+.+.. ....+++.++|..+++
T Consensus 1 ~KI~iIGa-GS~-~tp~li~~l~~~~~~l~---~~ei~L~Did~-~~rl~~v~~~~~~~~~~~-~~~~~v~~t~d~~~al 73 (419)
T cd05296 1 MKLTIIGG-GSS-YTPELIEGLIRRYEELP---VTELVLVDIDE-EEKLEIVGALAKRMVKKA-GLPIKVHLTTDRREAL 73 (419)
T ss_pred CEEEEECC-chH-hHHHHHHHHHhccccCC---CCEEEEecCCh-HHHHHHHHHHHHHHHHhh-CCCeEEEEeCCHHHHh
Confidence 69999997 653 22 23333332 2221 13566778874 455543 223333222 2234677788999999
Q ss_pred CCCcEEEEecccCCCCCCchhh--------------------hHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHHH
Q 019713 171 EDAEWALLIGAKPRGPGMERAG--------------------LLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNAL 230 (337)
Q Consensus 171 ~dADvVIitag~prk~g~~R~d--------------------ll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t~ 230 (337)
+|||+||++.+.++.++++|.+ ...+|++++++++++|+++ ||+||+|++|||+|++|+
T Consensus 74 ~gadfVi~~~~vg~~~~r~~de~i~~~~Gi~gqET~G~GG~~~a~rni~ii~~i~~~i~~~-~Pda~lin~TNP~~ivt~ 152 (419)
T cd05296 74 EGADFVFTQIRVGGLEARALDERIPLKHGVIGQETTGAGGFAKALRTIPVILDIAEDVEEL-APDAWLINFTNPAGIVTE 152 (419)
T ss_pred CCCCEEEEEEeeCCcchhhhhhhhHHHcCCccccCCCcchHHHhhhhHHHHHHHHHHHHHH-CCCeEEEEecCHHHHHHH
Confidence 9999999988766655554443 2679999999999999999 799999999999999999
Q ss_pred HHHHHCCCCCCCeEEecCchhHHHHHHHHHHHhCCCcccccceEEEe-ccCCCcccccccceEcCeehhhhhhhc----c
Q 019713 231 ICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWG-NHSTTQVPDFLNARINGLPVKEIIKDH----K 305 (337)
Q Consensus 231 i~~k~s~~~p~kvIG~gT~LDs~R~~~~lA~~lgv~~~~V~~v~V~G-nHG~t~vp~~S~a~V~G~pl~e~i~~~----~ 305 (337)
++++.+ +.|+||+|+. +.|+++.+|+.+|+++++|+. +|+| || +.|+.+++.+|+++.+.+.+. .
T Consensus 153 a~~k~~---~~rviGlc~~--~~r~~~~ia~~lg~~~~~v~~-~v~GlNH----~~w~~~~~~~G~D~~p~l~~~~~~~~ 222 (419)
T cd05296 153 AVLRHT---GDRVIGLCNV--PIGLQRRIAELLGVDPEDVFI-DYAGLNH----LGWLRRVLLDGEDVLPELLEDLAALL 222 (419)
T ss_pred HHHHhc---cCCEEeeCCc--HHHHHHHHHHHhCCCHHHceE-EEEeccc----ceeeeeeeECCcccHHHHHHHhhhcc
Confidence 999875 4589999877 699999999999999999995 9999 99 999999999999998744321 0
Q ss_pred cc--hHHH-HHHHHhccCcccceeheeeee
Q 019713 306 WL--EEGF-TETIQKVRLVDNFTLILFVMN 332 (337)
Q Consensus 306 ~~--~~e~-~~~v~~~g~~~~~~l~~~~~~ 332 (337)
.. ...| .+..+..|.-|+.||+||||.
T Consensus 223 ~~~~~~~~~~~~~~~~g~~p~~Yl~yy~~~ 252 (419)
T cd05296 223 SFEEGLLFGPELLRALGALPNEYLRYYYQT 252 (419)
T ss_pred ccccccchHHHHHHhcCCcccchHHHHCCc
Confidence 00 0112 366777899999999999973
No 40
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=99.92 E-value=1.7e-24 Score=216.79 Aligned_cols=218 Identities=15% Similarity=0.137 Sum_probs=168.7
Q ss_pred CEEEEEcCCCchHHHHHH--HHHHc-CCCCCCCceEEEeccccchhhHHHhHHHhHhhhccC--CcccEEEecCcccccC
Q 019713 97 VNIAVSGAAGMIANHLLF--KLAAG-EVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFP--LLREVKIGINPYELFE 171 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~--~L~~~-~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~--~~~~v~i~t~~~eal~ 171 (337)
+||+|||| |.+|++++. .++.. .+.+ ..+.|+| +++++++....++.+.... ...+++.++|.+++++
T Consensus 1 ~KIaIIGa-Gs~G~a~a~~~~i~~~~~~~g----~eV~L~D--id~e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~eal~ 73 (423)
T cd05297 1 IKIAFIGA-GSVVFTKNLVGDLLKTPELSG----STIALMD--IDEERLETVEILAKKIVEELGAPLKIEATTDRREALD 73 (423)
T ss_pred CeEEEECC-ChHHhHHHHHHHHhcCCCCCC----CEEEEEC--CCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhc
Confidence 58999995 999999877 45543 4433 1344454 4567777777777665422 2246677777789999
Q ss_pred CCcEEEEecccCCCCCCch----------------------hhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHH
Q 019713 172 DAEWALLIGAKPRGPGMER----------------------AGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNA 229 (337)
Q Consensus 172 dADvVIitag~prk~g~~R----------------------~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t 229 (337)
|||+||++.+.++.++.++ .....+|++++.++++.+.++ +|++|++++|||++++|
T Consensus 74 ~AD~Vi~ai~~~~~~~~~~de~i~~K~g~~~~~~~t~g~ggi~~~~~s~~~i~~ia~~i~~~-~p~a~~i~~tNPv~i~t 152 (423)
T cd05297 74 GADFVINTIQVGGHEYTETDFEIPEKYGYYQTVGDTSGPGGIFRALRTIPVLLDIARDIEEL-CPDAWLLNYANPMAELT 152 (423)
T ss_pred CCCEEEEeeEecCccchhhhhhhHHHcCeeeeccCCCcHHHHHHHHhhHHHHHHHHHHHHHH-CCCCEEEEcCChHHHHH
Confidence 9999999987655554444 345778999999999999999 68999999999999999
Q ss_pred HHHHHHCCCCCCCeEEecCchhHHHHHHHHHHHhCCCcccccceEEEe-ccCCCcccccccceEcCeehhhhhhh---c-
Q 019713 230 LICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWG-NHSTTQVPDFLNARINGLPVKEIIKD---H- 304 (337)
Q Consensus 230 ~i~~k~s~~~p~kvIG~gT~LDs~R~~~~lA~~lgv~~~~V~~v~V~G-nHG~t~vp~~S~a~V~G~pl~e~i~~---~- 304 (337)
+++++.++ .|+||+|+. +.|++..+|+.+|+++++|+. +++| || +.||..++.+|+++.+.+.+ +
T Consensus 153 ~~~~k~~~---~rviG~c~~--~~~~~~~~a~~l~~~~~~v~~-~~~GlNH----~~w~~~~~~~G~d~~p~l~~~~~~~ 222 (423)
T cd05297 153 WALNRYTP---IKTVGLCHG--VQGTAEQLAKLLGEPPEEVDY-QVAGINH----MAWLLKFEYNGEDLYPLLDEWIEEG 222 (423)
T ss_pred HHHHHhCC---CCEEEECCc--HHHHHHHHHHHhCCCHHHeEE-EEEeecc----HhhhhhheECCcchHHHHHHHHhcc
Confidence 99999874 489999987 899999999999999999995 8999 99 99999999999999876543 1
Q ss_pred --ccchHH-H-HHHHHhccCccc-------ceeheeeee
Q 019713 305 --KWLEEG-F-TETIQKVRLVDN-------FTLILFVMN 332 (337)
Q Consensus 305 --~~~~~e-~-~~~v~~~g~~~~-------~~l~~~~~~ 332 (337)
.|.... + .+-.+.-|..|+ .|++|||++
T Consensus 223 ~~~~~~~~~~~~~~~~~~g~~p~~~~~~~~~y~~~~~~~ 261 (423)
T cd05297 223 SEEWDQLSPVRFDMYRRYGLFPTESSEHLSEYVPHYRKE 261 (423)
T ss_pred CccchhcccchHHHHHHcCCcccCcchhhhhhccccccc
Confidence 121111 2 355666788887 788888764
No 41
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=99.90 E-value=4.2e-23 Score=207.10 Aligned_cols=191 Identities=15% Similarity=0.088 Sum_probs=138.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCC--CCceEEEeccccch-hhHHHhHHHhHhhhccCCcccEEEecCcccccCCC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGP--DQPIALKLLGSERS-LQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e--~~~v~L~L~d~d~~-~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dA 173 (337)
|||+|||| |. +.++.|+.+-+... -..-.|.|+|+|.. .+.....+..+.+.. ....+++.++|..+|++||
T Consensus 1 ~KI~iIGa-GS---~~tp~li~~l~~~~~~l~~~ei~L~DId~~rl~~v~~l~~~~~~~~-g~~~~v~~Ttdr~eAl~gA 75 (437)
T cd05298 1 FKIVIAGG-GS---TYTPGIVKSLLDRKEDFPLRELVLYDIDAERQEKVAEAVKILFKEN-YPEIKFVYTTDPEEAFTDA 75 (437)
T ss_pred CeEEEECC-cH---HHHHHHHHHHHhCcccCCCCEEEEECCCHHHHHHHHHHHHHHHHhh-CCCeEEEEECCHHHHhCCC
Confidence 69999997 54 34444432221110 11135666777642 222333444444333 2334788889999999999
Q ss_pred cEEEEe---ccc---------CCCCCC---ch-----hhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHHHHHH
Q 019713 174 EWALLI---GAK---------PRGPGM---ER-----AGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICL 233 (337)
Q Consensus 174 DvVIit---ag~---------prk~g~---~R-----~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t~i~~ 233 (337)
|+||.+ ||. |.|.|. +. .-...||+++++++++.|+++ ||+||+|++|||+|++|++++
T Consensus 76 DfVi~~irvGg~~~r~~De~Ip~kyGi~gqET~G~GG~~~alRtip~~~~i~~~i~~~-~pda~lin~tNP~~~vt~~~~ 154 (437)
T cd05298 76 DFVFAQIRVGGYAMREQDEKIPLKHGVVGQETCGPGGFAYGLRSIGPMIELIDDIEKY-SPDAWILNYSNPAAIVAEALR 154 (437)
T ss_pred CEEEEEeeeCCchHHHHHHhHHHHcCcceecCccHHHHHHHHhhHHHHHHHHHHHHHH-CCCeEEEEecCcHHHHHHHHH
Confidence 999986 332 334443 22 234779999999999999999 799999999999999999999
Q ss_pred HHCCCCCCCeEEecCchhHHHHHHHHHHHhCCCcccccceEEEe-ccCCCcccccccceEc-Ceehhhhhh
Q 019713 234 KNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWG-NHSTTQVPDFLNARIN-GLPVKEIIK 302 (337)
Q Consensus 234 k~s~~~p~kvIG~gT~LDs~R~~~~lA~~lgv~~~~V~~v~V~G-nHG~t~vp~~S~a~V~-G~pl~e~i~ 302 (337)
+..+. .|+||.|.. ..-++..+|+.+|+++++|+. .+.| || +.|+.+++.+ |+++.+.+.
T Consensus 155 ~~~~~--~kviGlC~~--~~~~~~~la~~lg~~~~~v~~-~~~GlNH----~~w~~~~~~~~G~D~~p~l~ 216 (437)
T cd05298 155 RLFPN--ARILNICDM--PIAIMDSMAAILGLDRKDLEP-DYFGLNH----FGWFTKIYDKQGEDLLPKLR 216 (437)
T ss_pred HHCCC--CCEEEECCc--HHHHHHHHHHHhCCCHHHceE-EEEeecc----hhhhhheEECCCCchHHHHH
Confidence 87422 389999765 456788999999999999994 7899 99 9999999999 999987654
No 42
>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=99.84 E-value=3e-20 Score=184.37 Aligned_cols=222 Identities=16% Similarity=0.095 Sum_probs=151.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCC--CCCceEEEeccccchhhHHH-hHHHhHhhhccCCcccEEEecCcccccC
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLG--PDQPIALKLLGSERSLQALE-GVAMELEDSLFPLLREVKIGINPYELFE 171 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l~~--e~~~v~L~L~d~d~~~~~l~-g~a~DL~d~~~~~~~~v~i~t~~~eal~ 171 (337)
+..||+|||| | |+..+.++.+.+.. +-....|.|+|+|....+.- ..+--+-+.. ....++..++|..+||+
T Consensus 2 ~~~KI~iIGg-G---St~tp~~v~g~l~~~e~l~~~el~L~Did~~r~~~i~~~~~~~v~~~-g~~~kv~~ttd~~eAl~ 76 (442)
T COG1486 2 KKFKIVIIGG-G---STYTPKLLLGDLARTEELPVRELALYDIDEERLKIIAILAKKLVEEA-GAPVKVEATTDRREALE 76 (442)
T ss_pred CcceEEEECC-C---ccccHHHHHHHHhcCccCCcceEEEEeCCHHHHHHHHHHHHHHHHhh-CCCeEEEEecCHHHHhc
Confidence 4579999997 5 55555554444431 11123677777764322211 1111122222 22356788899999999
Q ss_pred CCcEEEEec---c---------cCCCCCCchh--------hhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHHHH
Q 019713 172 DAEWALLIG---A---------KPRGPGMERA--------GLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALI 231 (337)
Q Consensus 172 dADvVIita---g---------~prk~g~~R~--------dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t~i 231 (337)
|||+|+.+. | .|.|.|.-+. --..|+++++-+|++.|+++ ||+||++++|||+.++|+.
T Consensus 77 gAdfVi~~~rvG~l~~r~~De~IplkyG~~gqET~G~GGi~~glRtIpvildi~~~m~~~-~P~Aw~lNytNP~~~vTeA 155 (442)
T COG1486 77 GADFVITQIRVGGLEAREKDERIPLKHGLYGQETNGPGGIFYGLRTIPVILDIAKDMEKV-CPNAWMLNYTNPAAIVTEA 155 (442)
T ss_pred CCCEEEEEEeeCCcccchhhhccchhhCccccccccccHHHhhcccchHHHHHHHHHHHh-CCCceEEeccChHHHHHHH
Confidence 999999863 3 2445553222 12468999999999999999 7999999999999999999
Q ss_pred HHHHCCCCCCCeEEecCchhHHHHHHHHHHHhCCCc-ccccceEEEe-ccCCCcccccccceEcCeehhhhhhh----c-
Q 019713 232 CLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFY-DKVSNMTIWG-NHSTTQVPDFLNARINGLPVKEIIKD----H- 304 (337)
Q Consensus 232 ~~k~s~~~p~kvIG~gT~LDs~R~~~~lA~~lgv~~-~~V~~v~V~G-nHG~t~vp~~S~a~V~G~pl~e~i~~----~- 304 (337)
+.++.|.+ |+||.|.. ..-....||+.||+.+ ++++. -+.| || +.||..++.+|+++.+-+.+ .
T Consensus 156 v~r~~~~~--K~VGlCh~--~~g~~~~lAe~L~~~~~~~l~~-~~aGlNH----~~w~~~~~~~G~d~~p~l~~~~~~~~ 226 (442)
T COG1486 156 VRRLYPKI--KIVGLCHG--PIGIAMELAEVLGLEPREDLRY-RVAGLNH----MVWILRVRDDGEDLYPELLEALEEGG 226 (442)
T ss_pred HHHhCCCC--cEEeeCCc--hHHHHHHHHHHhCCCchhceeE-EEeechh----hhhhhHhhhcCccchHHHHHHHhccc
Confidence 99977422 89999665 4667999999999975 99994 7899 99 99999999999888764432 1
Q ss_pred -ccc-------hHHHHHHHHh--ccCcccceeheeee
Q 019713 305 -KWL-------EEGFTETIQK--VRLVDNFTLILFVM 331 (337)
Q Consensus 305 -~~~-------~~e~~~~v~~--~g~~~~~~l~~~~~ 331 (337)
.|. ...+.+...+ -+..|+.|+.||||
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 263 (442)
T COG1486 227 SPSEPENKNIQSPVWIDMFLKYGYPVLPSSYHRYYYY 263 (442)
T ss_pred cCCccccccccCcchHHHHHHhCcCcccCcchhhhee
Confidence 111 0112233333 34566778777776
No 43
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=99.72 E-value=1.5e-16 Score=142.45 Aligned_cols=156 Identities=19% Similarity=0.145 Sum_probs=108.1
Q ss_pred EEEEEcCCCchHHHHH--HHHHHcCCCCCCCceEEEeccccchhhHHH---hHHHhHhhhccCCcccEEEecCcccccCC
Q 019713 98 NIAVSGAAGMIANHLL--FKLAAGEVLGPDQPIALKLLGSERSLQALE---GVAMELEDSLFPLLREVKIGINPYELFED 172 (337)
Q Consensus 98 KI~IIGAaG~VG~~la--~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~---g~a~DL~d~~~~~~~~v~i~t~~~eal~d 172 (337)
||+|||| |++-.... ..+...+-++ .-++.|+|+|. ++|+ ..+..+.+.. ....+++.++|..+|++|
T Consensus 1 KI~iIGa-GS~~~~~~l~~~l~~~~~l~---~~ei~L~Did~--~RL~~~~~~~~~~~~~~-~~~~~v~~ttd~~eAl~g 73 (183)
T PF02056_consen 1 KITIIGA-GSTYFPLLLLGDLLRTEELS---GSEIVLMDIDE--ERLEIVERLARRMVEEA-GADLKVEATTDRREALEG 73 (183)
T ss_dssp EEEEETT-TSCCHHHHHHHHHHCTTTST---EEEEEEE-SCH--HHHHHHHHHHHHHHHHC-TTSSEEEEESSHHHHHTT
T ss_pred CEEEECC-chHhhHHHHHHHHhcCccCC---CcEEEEEcCCH--HHHHHHHHHHHHHHHhc-CCCeEEEEeCCHHHHhCC
Confidence 8999996 76555422 2333333332 24677777754 4444 3444444333 334478888999999999
Q ss_pred CcEEEEec---c---------cCCCCCCch----------hhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHHH
Q 019713 173 AEWALLIG---A---------KPRGPGMER----------AGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNAL 230 (337)
Q Consensus 173 ADvVIita---g---------~prk~g~~R----------~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t~ 230 (337)
||+||.+. | .|.+.|... .....|+++++.+++++|+++ |||||+|++|||+..+|.
T Consensus 74 ADfVi~~irvGg~~~r~~De~Ip~k~Gi~~~~~eT~G~GG~~~alRtipv~~~ia~~i~~~-~PdAw~iNytNP~~~vt~ 152 (183)
T PF02056_consen 74 ADFVINQIRVGGLEAREIDEEIPLKYGIVGTIQETVGPGGFFRALRTIPVMLDIARDIEEL-CPDAWLINYTNPMGIVTE 152 (183)
T ss_dssp ESEEEE---TTHHHHHHHHHHTGGCCTTT-BTTSSSTHHHHHHHHHHHHHHHHHHHHHHHH-TTTSEEEE-SSSHHHHHH
T ss_pred CCEEEEEeeecchHHHHHHHHHHHHhCCccccccccCccHHHHHHhhHHHHHHHHHHHHHh-CCCcEEEeccChHHHHHH
Confidence 99999874 2 366666422 234679999999999999999 799999999999999999
Q ss_pred HHHHHCCCCCCCeEEecCchhHHHHHHHHHHHhCC
Q 019713 231 ICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGV 265 (337)
Q Consensus 231 i~~k~s~~~p~kvIG~gT~LDs~R~~~~lA~~lgv 265 (337)
.+.+.++++ |++|.|.. ..-+...+|+.||+
T Consensus 153 a~~r~~~~~--k~vGlCh~--~~~~~~~la~~L~~ 183 (183)
T PF02056_consen 153 ALSRYTPKI--KVVGLCHG--PQGTRRQLAKLLGM 183 (183)
T ss_dssp HHHHHSTTS--EEEEE-SH--HHHHHHHHHHHHT-
T ss_pred HHHHhCCCC--CEEEECCC--HHHHHHHHHHHhCc
Confidence 999987545 79999755 46678888988874
No 44
>PF02866 Ldh_1_C: lactate/malate dehydrogenase, alpha/beta C-terminal domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR022383 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the C-terminal, and is thought to be an is an unusual alpha+beta fold.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 4MDH_B 5MDH_A 1GV0_A 1GUZ_D 2EWD_B 2FRM_D 2FNZ_B 2FN7_B 2FM3_A 1LTH_T ....
Probab=99.62 E-value=2.8e-16 Score=139.41 Aligned_cols=75 Identities=32% Similarity=0.386 Sum_probs=67.0
Q ss_pred CchhHHHHHHHHHHHhCCCcccccceEEEeccCCCcccccccceEcCeehhhhhhh----cccchHHHHHHHHhccCccc
Q 019713 248 TRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKD----HKWLEEGFTETIQKVRLVDN 323 (337)
Q Consensus 248 T~LDs~R~~~~lA~~lgv~~~~V~~v~V~GnHG~t~vp~~S~a~V~G~pl~e~i~~----~~~~~~e~~~~v~~~g~~~~ 323 (337)
|.||++|++++||+++|++|.+|+ ++||||||++|||+||+++|+|.|+.++.+. ..|..+++.+.++++|++.-
T Consensus 1 T~LDs~R~~~~la~~l~v~~~~v~-~~ViGeHg~s~~~~~S~~~v~g~pl~~~~~~~~~~~~~~~~~l~~~v~~~g~~ii 79 (174)
T PF02866_consen 1 TMLDSARFRYFLAEKLGVNPSSVN-AYVIGEHGDSQVPDWSHAKVGGVPLLSYAKPSGKLSEEELEELTERVRKAGYEII 79 (174)
T ss_dssp THHHHHHHHHHHHHHHTSGGGGEE-EEEEBSSSTTEEEEGGGEEETTEEHHHHHHTTTSSSHHHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHCcCccceE-EEEEecCCcceeeeeecccccccccccccccccchhHHhhhccccccEeccceee
Confidence 789999999999999999999999 5999999999999999999999999887643 34567899999999988763
No 45
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=98.95 E-value=7e-09 Score=99.97 Aligned_cols=144 Identities=18% Similarity=0.126 Sum_probs=98.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHH---hHHHhH-hhhc----------cCCcccEE
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALE---GVAMEL-EDSL----------FPLLREVK 161 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~---g~a~DL-~d~~----------~~~~~~v~ 161 (337)
.+||+|||| |.||+.+|..++.+|+ +|.|. |+ +++.++ ...... +... ...+..++
T Consensus 3 i~kv~ViGa-G~MG~gIA~~~A~~G~-----~V~l~--D~--~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~ 72 (307)
T COG1250 3 IKKVAVIGA-GVMGAGIAAVFALAGY-----DVVLK--DI--SPEALERALAYIEKNLEKLVEKGKLTEEEADAALARIT 72 (307)
T ss_pred ccEEEEEcc-cchhHHHHHHHhhcCC-----ceEEE--eC--CHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhcc
Confidence 469999995 9999999999999665 36653 33 322211 111111 1000 01122344
Q ss_pred EecCcccccCCCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchh-HHHHH--------
Q 019713 162 IGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNT-NALIC-------- 232 (337)
Q Consensus 162 i~t~~~eal~dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~-~t~i~-------- 232 (337)
.+ .++.+++|||+||.++ .+|.++.+++.+++.++++|++ |++||.... ++.++
T Consensus 73 ~~-~~~~~l~~~DlVIEAv--------------~E~levK~~vf~~l~~~~~~~a--IlASNTSsl~it~ia~~~~rper 135 (307)
T COG1250 73 PT-TDLAALKDADLVIEAV--------------VEDLELKKQVFAELEALAKPDA--ILASNTSSLSITELAEALKRPER 135 (307)
T ss_pred cc-CchhHhccCCEEEEec--------------cccHHHHHHHHHHHHhhcCCCc--EEeeccCCCCHHHHHHHhCCchh
Confidence 33 4567999999999985 6788999999999999988998 489998765 44444
Q ss_pred ---HHHCCCCCC-----CeE-EecCchhHHHHHHHHHHHhCCCc
Q 019713 233 ---LKNAPSIPA-----KNF-HALTRLDENRAKCQLALKAGVFY 267 (337)
Q Consensus 233 ---~k~s~~~p~-----kvI-G~gT~LDs~R~~~~lA~~lgv~~ 267 (337)
.|++ ++|+ ++| |..|.-++......+++++|..|
T Consensus 136 ~iG~HFf-NP~~~m~LVEvI~g~~T~~e~~~~~~~~~~~igK~~ 178 (307)
T COG1250 136 FIGLHFF-NPVPLMPLVEVIRGEKTSDETVERVVEFAKKIGKTP 178 (307)
T ss_pred EEEEecc-CCCCcceeEEEecCCCCCHHHHHHHHHHHHHcCCCC
Confidence 3344 3443 555 66788889888999999999765
No 46
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=98.92 E-value=6.6e-09 Score=92.89 Aligned_cols=145 Identities=17% Similarity=0.081 Sum_probs=86.2
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHh---HHHh-Hhhh---c-------cCCcccEEEe
Q 019713 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEG---VAME-LEDS---L-------FPLLREVKIG 163 (337)
Q Consensus 98 KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g---~a~D-L~d~---~-------~~~~~~v~i~ 163 (337)
||+|||| |.+|..+|..++..|+ .|.|+ |. +++.++. ...+ +... . .....+++.+
T Consensus 1 ~V~ViGa-G~mG~~iA~~~a~~G~-----~V~l~--d~--~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~ 70 (180)
T PF02737_consen 1 KVAVIGA-GTMGRGIAALFARAGY-----EVTLY--DR--SPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFT 70 (180)
T ss_dssp EEEEES--SHHHHHHHHHHHHTTS-----EEEEE---S--SHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEE
T ss_pred CEEEEcC-CHHHHHHHHHHHhCCC-----cEEEE--EC--ChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccc
Confidence 7999995 9999999999999886 36653 43 3232221 1111 1100 0 0123467776
Q ss_pred cCcccccCCCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchh-HHHHH----------
Q 019713 164 INPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNT-NALIC---------- 232 (337)
Q Consensus 164 t~~~eal~dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~-~t~i~---------- 232 (337)
+ +++++.|||+||.+. .++.++.+++.+.|++++.|+++ ++||.... ++.++
T Consensus 71 ~-dl~~~~~adlViEai--------------~E~l~~K~~~~~~l~~~~~~~~i--lasnTSsl~i~~la~~~~~p~R~i 133 (180)
T PF02737_consen 71 T-DLEEAVDADLVIEAI--------------PEDLELKQELFAELDEICPPDTI--LASNTSSLSISELAAALSRPERFI 133 (180)
T ss_dssp S-SGGGGCTESEEEE-S---------------SSHHHHHHHHHHHHCCS-TTSE--EEE--SSS-HHHHHTTSSTGGGEE
T ss_pred c-CHHHHhhhheehhhc--------------cccHHHHHHHHHHHHHHhCCCce--EEecCCCCCHHHHHhccCcCceEE
Confidence 5 456666999999985 45689999999999999888985 78887654 44443
Q ss_pred -HHHCCCCCC-----CeE-EecCchhHHHHHHHHHHHhCCCcccc
Q 019713 233 -LKNAPSIPA-----KNF-HALTRLDENRAKCQLALKAGVFYDKV 270 (337)
Q Consensus 233 -~k~s~~~p~-----kvI-G~gT~LDs~R~~~~lA~~lgv~~~~V 270 (337)
.++. ++|. +++ |..|.-++......+.+.+|..|--+
T Consensus 134 g~Hf~-~P~~~~~lVEvv~~~~T~~~~~~~~~~~~~~~gk~pv~v 177 (180)
T PF02737_consen 134 GMHFF-NPPHLMPLVEVVPGPKTSPETVDRVRALLRSLGKTPVVV 177 (180)
T ss_dssp EEEE--SSTTT--EEEEEE-TTS-HHHHHHHHHHHHHTT-EEEEE
T ss_pred EEecc-cccccCceEEEeCCCCCCHHHHHHHHHHHHHCCCEEEEe
Confidence 2222 2222 444 45566666666667777777766444
No 47
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.78 E-value=7.3e-08 Score=93.76 Aligned_cols=148 Identities=10% Similarity=-0.001 Sum_probs=94.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHH----hHhhh--c----cCCcccEEEecC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAM----ELEDS--L----FPLLREVKIGIN 165 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~----DL~d~--~----~~~~~~v~i~t~ 165 (337)
..||+|||| |.||+.+|..++..|+ .|.+ +|. +++.++.... .+... . .....+++..++
T Consensus 7 i~~VaVIGa-G~MG~giA~~~a~aG~-----~V~l--~D~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~ 76 (321)
T PRK07066 7 IKTFAAIGS-GVIGSGWVARALAHGL-----DVVA--WDP--APGAEAALRANVANAWPALERQGLAPGASPARLRFVAT 76 (321)
T ss_pred CCEEEEECc-CHHHHHHHHHHHhCCC-----eEEE--EeC--CHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCC
Confidence 468999995 9999999999999886 3555 443 3232221100 01110 0 011135566555
Q ss_pred cccccCCCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhH-HHHH-----------H
Q 019713 166 PYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTN-ALIC-----------L 233 (337)
Q Consensus 166 ~~eal~dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~-t~i~-----------~ 233 (337)
..+++++||+|+.++ .+|.++.+++...|.+++.|++ |+.||.+... +.+. .
T Consensus 77 l~~av~~aDlViEav--------------pE~l~vK~~lf~~l~~~~~~~a--IlaSnTS~l~~s~la~~~~~p~R~~g~ 140 (321)
T PRK07066 77 IEACVADADFIQESA--------------PEREALKLELHERISRAAKPDA--IIASSTSGLLPTDFYARATHPERCVVG 140 (321)
T ss_pred HHHHhcCCCEEEECC--------------cCCHHHHHHHHHHHHHhCCCCe--EEEECCCccCHHHHHHhcCCcccEEEE
Confidence 557899999999985 4567888999999999988887 6899987653 3332 1
Q ss_pred HHCCCCCC-----CeE-EecCchhHHHHHHHHHHHhCCCcccc
Q 019713 234 KNAPSIPA-----KNF-HALTRLDENRAKCQLALKAGVFYDKV 270 (337)
Q Consensus 234 k~s~~~p~-----kvI-G~gT~LDs~R~~~~lA~~lgv~~~~V 270 (337)
+++ +.|. +++ |..|.-++......+.+.+|..|--+
T Consensus 141 Hff-nP~~~~pLVEVv~g~~T~~e~~~~~~~f~~~lGk~pV~v 182 (321)
T PRK07066 141 HPF-NPVYLLPLVEVLGGERTAPEAVDAAMGIYRALGMRPLHV 182 (321)
T ss_pred ecC-CccccCceEEEeCCCCCCHHHHHHHHHHHHHcCCEeEec
Confidence 222 2332 444 45677777666666777899777444
No 48
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.72 E-value=9.7e-08 Score=91.29 Aligned_cols=147 Identities=12% Similarity=0.052 Sum_probs=88.4
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhh----hc--c--------CCccc
Q 019713 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELED----SL--F--------PLLRE 159 (337)
Q Consensus 94 ~~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d----~~--~--------~~~~~ 159 (337)
.++.||+|||| |.||..+|..++..|. +|.++ |. +++.++.....+.. .. . ....+
T Consensus 3 ~~~~~V~ViGa-G~mG~~iA~~~a~~G~-----~V~l~--d~--~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~ 72 (286)
T PRK07819 3 DAIQRVGVVGA-GQMGAGIAEVCARAGV-----DVLVF--ET--TEELATAGRNRIEKSLERAVSRGKLTERERDAALAR 72 (286)
T ss_pred CCccEEEEEcc-cHHHHHHHHHHHhCCC-----EEEEE--EC--CHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhC
Confidence 34569999995 9999999999999886 36553 33 33333221111110 00 0 01235
Q ss_pred EEEecCcccccCCCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhc-CCCeEEEEeCCCchh-HHHHH-----
Q 019713 160 VKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVA-SRNVKVIVVGNPCNT-NALIC----- 232 (337)
Q Consensus 160 v~i~t~~~eal~dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a-~p~aivIvvtNPvd~-~t~i~----- 232 (337)
++.++ +++++++||+||.+. .++.++.+++...+++++ .|+++ ++||.... ++.+.
T Consensus 73 l~~~~-~~~~~~~~d~ViEav--------------~E~~~~K~~l~~~l~~~~~~~~~i--l~snTS~~~~~~la~~~~~ 135 (286)
T PRK07819 73 LRFTT-DLGDFADRQLVIEAV--------------VEDEAVKTEIFAELDKVVTDPDAV--LASNTSSIPIMKLAAATKR 135 (286)
T ss_pred eEeeC-CHHHhCCCCEEEEec--------------ccCHHHHHHHHHHHHHhhCCCCcE--EEECCCCCCHHHHHhhcCC
Confidence 55654 558899999999985 566888899999999986 67864 67776543 22222
Q ss_pred ------HHHCCCCCC-----CeE-EecCchhHHHHHHHHHH-HhCCCcc
Q 019713 233 ------LKNAPSIPA-----KNF-HALTRLDENRAKCQLAL-KAGVFYD 268 (337)
Q Consensus 233 ------~k~s~~~p~-----kvI-G~gT~LDs~R~~~~lA~-~lgv~~~ 268 (337)
.++. +.++ +++ |..|.-++...-..+.+ .+|..|-
T Consensus 136 ~~r~~g~hf~-~P~~~~~lvElv~~~~T~~~~~~~~~~~~~~~lgk~pv 183 (286)
T PRK07819 136 PGRVLGLHFF-NPVPVLPLVELVPTLVTSEATVARAEEFASDVLGKQVV 183 (286)
T ss_pred CccEEEEecC-CCcccCceEEEeCCCCCCHHHHHHHHHHHHHhCCCCce
Confidence 1222 1111 333 56676666444444444 5887663
No 49
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=98.68 E-value=2e-07 Score=99.64 Aligned_cols=148 Identities=16% Similarity=0.165 Sum_probs=97.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHh---HHHhHhh-hc----------cCCcccEE
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEG---VAMELED-SL----------FPLLREVK 161 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g---~a~DL~d-~~----------~~~~~~v~ 161 (337)
..||+|||| |.||..+|..++..|+ +|.|+ |. +.+.++. .+.++.+ .. .....+++
T Consensus 313 i~~v~ViGa-G~mG~gIA~~~a~~G~-----~V~l~--d~--~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~ 382 (714)
T TIGR02437 313 VKQAAVLGA-GIMGGGIAYQSASKGT-----PIVMK--DI--NQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGIT 382 (714)
T ss_pred cceEEEECC-chHHHHHHHHHHhCCC-----eEEEE--eC--CHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeE
Confidence 458999995 9999999999999886 36654 33 3332221 1111100 00 01123566
Q ss_pred EecCcccccCCCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchh-HHHHH--------
Q 019713 162 IGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNT-NALIC-------- 232 (337)
Q Consensus 162 i~t~~~eal~dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~-~t~i~-------- 232 (337)
.++ ++++++|||+||.+. .++.++.+++..+|+++++|++ |++||.... ++.++
T Consensus 383 ~~~-~~~~~~~aDlViEav--------------~E~l~~K~~vf~~l~~~~~~~~--ilasnTS~l~i~~ia~~~~~p~r 445 (714)
T TIGR02437 383 PTL-SYAGFDNVDIVVEAV--------------VENPKVKAAVLAEVEQHVREDA--ILASNTSTISISLLAKALKRPEN 445 (714)
T ss_pred EeC-CHHHhcCCCEEEEcC--------------cccHHHHHHHHHHHHhhCCCCc--EEEECCCCCCHHHHHhhcCCccc
Confidence 654 568899999999985 5678999999999999988887 479998764 44443
Q ss_pred ---HHHCCCCCC-----CeE-EecCchhHHHHHHHHHHHhCCCccccc
Q 019713 233 ---LKNAPSIPA-----KNF-HALTRLDENRAKCQLALKAGVFYDKVS 271 (337)
Q Consensus 233 ---~k~s~~~p~-----kvI-G~gT~LDs~R~~~~lA~~lgv~~~~V~ 271 (337)
++++ +++. ++| |..|.-++......+++++|..|--|+
T Consensus 446 ~ig~Hff-~P~~~~~lvEvv~g~~Ts~~~~~~~~~~~~~lgk~pv~v~ 492 (714)
T TIGR02437 446 FCGMHFF-NPVHRMPLVEVIRGEKSSDETIATVVAYASKMGKTPIVVN 492 (714)
T ss_pred EEEEecC-CCcccCceEeecCCCCCCHHHHHHHHHHHHHcCCEEEEeC
Confidence 2232 2222 444 566877877666777788887775443
No 50
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=98.66 E-value=2.1e-07 Score=99.39 Aligned_cols=148 Identities=18% Similarity=0.168 Sum_probs=97.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHh---HHHh-Hhhhc----------cCCcccEE
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEG---VAME-LEDSL----------FPLLREVK 161 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g---~a~D-L~d~~----------~~~~~~v~ 161 (337)
..||+|||| |.||..+|..++..|+ .|.|+ |. +++.++. .+.+ +.... .....+++
T Consensus 313 i~~v~ViGa-G~mG~gIA~~~a~~G~-----~V~l~--d~--~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~ 382 (715)
T PRK11730 313 VKQAAVLGA-GIMGGGIAYQSASKGV-----PVIMK--DI--NQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIR 382 (715)
T ss_pred cceEEEECC-chhHHHHHHHHHhCCC-----eEEEE--eC--CHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeE
Confidence 358999995 9999999999999886 36654 33 3333221 1000 10000 01123566
Q ss_pred EecCcccccCCCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchh-HHHHHH-------
Q 019713 162 IGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNT-NALICL------- 233 (337)
Q Consensus 162 i~t~~~eal~dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~-~t~i~~------- 233 (337)
.++ ++++++|||+||.+. .++.++.+++.++|+++++|++ |++||.... ++.++.
T Consensus 383 ~~~-~~~~~~~aDlViEav--------------~E~l~~K~~vf~~l~~~~~~~~--ilasNTSsl~i~~la~~~~~p~r 445 (715)
T PRK11730 383 PTL-DYAGFERVDVVVEAV--------------VENPKVKAAVLAEVEQKVREDT--ILASNTSTISISLLAKALKRPEN 445 (715)
T ss_pred EeC-CHHHhcCCCEEEecc--------------cCcHHHHHHHHHHHHhhCCCCc--EEEEcCCCCCHHHHHhhcCCCcc
Confidence 654 568899999999985 5678999999999999988887 479998764 444442
Q ss_pred ----HHCCCCCC-----CeE-EecCchhHHHHHHHHHHHhCCCccccc
Q 019713 234 ----KNAPSIPA-----KNF-HALTRLDENRAKCQLALKAGVFYDKVS 271 (337)
Q Consensus 234 ----k~s~~~p~-----kvI-G~gT~LDs~R~~~~lA~~lgv~~~~V~ 271 (337)
+++ ++|. +++ |..|.-++.-....+++.+|..|--|+
T Consensus 446 ~~g~Hff-~P~~~~~lVEvv~g~~T~~~~~~~~~~~~~~lgk~pv~v~ 492 (715)
T PRK11730 446 FCGMHFF-NPVHRMPLVEVIRGEKTSDETIATVVAYASKMGKTPIVVN 492 (715)
T ss_pred EEEEecC-CcccccceEEeeCCCCCCHHHHHHHHHHHHHhCCceEEec
Confidence 333 2222 344 556777776666667788888775444
No 51
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=98.66 E-value=2.8e-08 Score=91.38 Aligned_cols=155 Identities=17% Similarity=0.127 Sum_probs=103.8
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccch--hhHHHhHHHhHhhhc---------------cC
Q 019713 93 WKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERS--LQALEGVAMELEDSL---------------FP 155 (337)
Q Consensus 93 ~~~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~--~~~l~g~a~DL~d~~---------------~~ 155 (337)
+.++..|+|||| |.+|+.+|+..+..|+ .|.|+ |.+++ .+..++..-.+.+.+ ..
T Consensus 8 ~~~~~~V~ivGa-G~MGSGIAQv~a~sg~-----~V~l~--d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~ 79 (298)
T KOG2304|consen 8 MAEIKNVAIVGA-GQMGSGIAQVAATSGL-----NVWLV--DANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDD 79 (298)
T ss_pred cccccceEEEcc-cccchhHHHHHHhcCC-----ceEEe--cCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHH
Confidence 456678999995 9999999999999887 36553 33221 111122222222111 01
Q ss_pred CcccEEEecCcccccCCCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchh-HHHHH--
Q 019713 156 LLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNT-NALIC-- 232 (337)
Q Consensus 156 ~~~~v~i~t~~~eal~dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~-~t~i~-- 232 (337)
.+.++..+++-..++.|||+||.+ +.+|+.|.+++.+.|++.|.+++ |++||.... ++.++
T Consensus 80 ~l~ri~~~tnv~~~v~dadliiEA--------------ivEn~diK~~lF~~l~~~ak~~~--il~tNTSSl~lt~ia~~ 143 (298)
T KOG2304|consen 80 TLDRIKTSTNVSDAVSDADLIIEA--------------IVENLDIKRKLFKDLDKIAKSST--ILATNTSSLSLTDIASA 143 (298)
T ss_pred HHHHHHHcCCHHHhhhhhHHHHHH--------------HHHhHHHHHHHHHHHHhhcccce--EEeecccceeHHHHHhh
Confidence 123455566777889999998876 47899999999999999987787 478998754 44444
Q ss_pred ---------HHHCCCCCC-----CeE-EecCchhHHHHHHHHHHHhCCCcccccc
Q 019713 233 ---------LKNAPSIPA-----KNF-HALTRLDENRAKCQLALKAGVFYDKVSN 272 (337)
Q Consensus 233 ---------~k~s~~~p~-----kvI-G~gT~LDs~R~~~~lA~~lgv~~~~V~~ 272 (337)
++++ +.+| ++| +.-|+-+|--+-.-+++.+|..+...++
T Consensus 144 ~~~~srf~GlHFf-NPvPvMKLvEVir~~~TS~eTf~~l~~f~k~~gKttVackD 197 (298)
T KOG2304|consen 144 TQRPSRFAGLHFF-NPVPVMKLVEVIRTDDTSDETFNALVDFGKAVGKTTVACKD 197 (298)
T ss_pred ccChhhhceeecc-CCchhHHHhhhhcCCCCCHHHHHHHHHHHHHhCCCceeecC
Confidence 3444 3333 566 6668877877777889999988755543
No 52
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=98.65 E-value=2.2e-07 Score=99.10 Aligned_cols=148 Identities=16% Similarity=0.134 Sum_probs=95.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHH-cCCCCCCCceEEEeccccchhhHHHh---HHH-hHhhhc----------cCCcccE
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAA-GEVLGPDQPIALKLLGSERSLQALEG---VAM-ELEDSL----------FPLLREV 160 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~-~~l~~e~~~v~L~L~d~d~~~~~l~g---~a~-DL~d~~----------~~~~~~v 160 (337)
..||+|||| |.||..+|..++. .|+ +|.|+ |.+ ++.++. .+. .+.... .....++
T Consensus 304 i~~v~ViGa-G~mG~~iA~~~a~~~G~-----~V~l~--d~~--~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i 373 (699)
T TIGR02440 304 IKKVGILGG-GLMGGGIASVTATKAGI-----PVRIK--DIN--PQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALI 373 (699)
T ss_pred ccEEEEECC-cHHHHHHHHHHHHHcCC-----eEEEE--eCC--HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCe
Confidence 468999995 9999999999884 676 36654 333 232221 111 111110 0112356
Q ss_pred EEecCcccccCCCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchh-HHHHHH------
Q 019713 161 KIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNT-NALICL------ 233 (337)
Q Consensus 161 ~i~t~~~eal~dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~-~t~i~~------ 233 (337)
+.++ ++++++|||+||.+. .++.++.+++..+|++++.|++ |++||.... ++.++.
T Consensus 374 ~~~~-~~~~~~~adlViEav--------------~E~l~~K~~v~~~l~~~~~~~~--ilasnTS~l~i~~la~~~~~p~ 436 (699)
T TIGR02440 374 TGTT-DYRGFKDVDIVIEAV--------------FEDLALKHQMVKDIEQECAAHT--IFASNTSSLPIGQIAAAASRPE 436 (699)
T ss_pred EEeC-ChHHhccCCEEEEec--------------cccHHHHHHHHHHHHhhCCCCc--EEEeCCCCCCHHHHHHhcCCcc
Confidence 6654 568999999999985 5678999999999999988887 478998764 444432
Q ss_pred -----HHCCCCCC-----CeE-EecCchhHHHHHHHHHHHhCCCccccc
Q 019713 234 -----KNAPSIPA-----KNF-HALTRLDENRAKCQLALKAGVFYDKVS 271 (337)
Q Consensus 234 -----k~s~~~p~-----kvI-G~gT~LDs~R~~~~lA~~lgv~~~~V~ 271 (337)
+++ +.|. +++ |..|.-++.-....+++.+|..|--|+
T Consensus 437 r~~g~Hff-nP~~~~~lVEvv~g~~T~~~~~~~~~~~~~~~gk~pv~v~ 484 (699)
T TIGR02440 437 NVIGLHYF-SPVEKMPLVEVIPHAGTSEQTIATTVALAKKQGKTPIVVA 484 (699)
T ss_pred cEEEEecC-CccccCceEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEEc
Confidence 222 2222 444 556777776666677888887774443
No 53
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=98.64 E-value=1.9e-07 Score=100.08 Aligned_cols=148 Identities=16% Similarity=0.115 Sum_probs=97.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHh---HHHhHhhhc-----------cCCcccEE
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEG---VAMELEDSL-----------FPLLREVK 161 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g---~a~DL~d~~-----------~~~~~~v~ 161 (337)
..||+|||| |.||..+|..++..|+ +|.| +|. +++.++. ...+..+.. .....+++
T Consensus 335 i~~v~ViGa-G~MG~gIA~~~a~~G~-----~V~l--~d~--~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~ 404 (737)
T TIGR02441 335 VKTLAVLGA-GLMGAGIAQVSVDKGL-----KTVL--KDA--TPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLT 404 (737)
T ss_pred ccEEEEECC-CHhHHHHHHHHHhCCC-----cEEE--ecC--CHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeE
Confidence 368999995 9999999999999886 3665 333 3333221 111111100 01123566
Q ss_pred EecCcccccCCCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchh-HHHHH--------
Q 019713 162 IGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNT-NALIC-------- 232 (337)
Q Consensus 162 i~t~~~eal~dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~-~t~i~-------- 232 (337)
.++ ++++++|||+||.+. .+|.++.+++.++|+++++|+++ ++||.... ++.++
T Consensus 405 ~~~-~~~~~~~aDlViEAv--------------~E~l~~K~~vf~~l~~~~~~~~i--lasNTSsl~i~~la~~~~~p~r 467 (737)
T TIGR02441 405 PTL-DYSGFKNADMVIEAV--------------FEDLSLKHKVIKEVEAVVPPHCI--IASNTSALPIKDIAAVSSRPEK 467 (737)
T ss_pred EeC-CHHHhccCCeehhhc--------------cccHHHHHHHHHHHHhhCCCCcE--EEEcCCCCCHHHHHhhcCCccc
Confidence 654 578999999999985 56789999999999999888874 78998764 44443
Q ss_pred ---HHHCCCCCC-----CeE-EecCchhHHHHHHHHHHHhCCCccccc
Q 019713 233 ---LKNAPSIPA-----KNF-HALTRLDENRAKCQLALKAGVFYDKVS 271 (337)
Q Consensus 233 ---~k~s~~~p~-----kvI-G~gT~LDs~R~~~~lA~~lgv~~~~V~ 271 (337)
++++ +.+. +++ |..|.-++......+++++|..|--|+
T Consensus 468 ~ig~Hff-~P~~~m~LvEvv~g~~Ts~~~~~~~~~~~~~lgk~pv~v~ 514 (737)
T TIGR02441 468 VIGMHYF-SPVDKMQLLEIITHDGTSKDTLASAVAVGLKQGKVVIVVK 514 (737)
T ss_pred eEEEecc-CCcccCceEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEC
Confidence 2333 2222 444 566887777667778888887764443
No 54
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=98.64 E-value=2.8e-07 Score=98.38 Aligned_cols=148 Identities=16% Similarity=0.130 Sum_probs=97.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHH-HcCCCCCCCceEEEeccccchhhHHHh---HHHhHhhhc-----------cCCcccE
Q 019713 96 MVNIAVSGAAGMIANHLLFKLA-AGEVLGPDQPIALKLLGSERSLQALEG---VAMELEDSL-----------FPLLREV 160 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~-~~~l~~e~~~v~L~L~d~d~~~~~l~g---~a~DL~d~~-----------~~~~~~v 160 (337)
..||+|||| |.||..+|..++ ..|+ +|.|+ |. +.+.++. ...+..+.. .....++
T Consensus 309 i~~v~ViGa-G~mG~giA~~~a~~~G~-----~V~l~--d~--~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i 378 (708)
T PRK11154 309 VNKVGVLGG-GLMGGGIAYVTATKAGL-----PVRIK--DI--NPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALI 378 (708)
T ss_pred ccEEEEECC-chhhHHHHHHHHHHcCC-----eEEEE--eC--CHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcE
Confidence 468999995 999999999998 7676 36654 33 2222221 111111000 0112357
Q ss_pred EEecCcccccCCCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchh-HHHHH-------
Q 019713 161 KIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNT-NALIC------- 232 (337)
Q Consensus 161 ~i~t~~~eal~dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~-~t~i~------- 232 (337)
+.++ ++++++|||+||.+. .+|.++.+++...|+++++|+++ ++||.... ++.++
T Consensus 379 ~~~~-~~~~~~~aDlViEav--------------~E~~~~K~~v~~~le~~~~~~~i--lasnTS~l~i~~la~~~~~p~ 441 (708)
T PRK11154 379 SGTT-DYRGFKHADVVIEAV--------------FEDLALKQQMVAEVEQNCAPHTI--FASNTSSLPIGQIAAAAARPE 441 (708)
T ss_pred EEeC-ChHHhccCCEEeecc--------------cccHHHHHHHHHHHHhhCCCCcE--EEECCCCCCHHHHHHhcCccc
Confidence 7665 568999999999985 56789999999999999888974 78998764 44443
Q ss_pred ----HHHCCCCCC-----CeE-EecCchhHHHHHHHHHHHhCCCccccc
Q 019713 233 ----LKNAPSIPA-----KNF-HALTRLDENRAKCQLALKAGVFYDKVS 271 (337)
Q Consensus 233 ----~k~s~~~p~-----kvI-G~gT~LDs~R~~~~lA~~lgv~~~~V~ 271 (337)
.+++ +.+. +++ |..|.-++.-.-..+++++|+.|--|+
T Consensus 442 r~ig~Hff-~P~~~~~lVEvv~g~~Ts~~~~~~~~~~~~~~gk~pv~v~ 489 (708)
T PRK11154 442 QVIGLHYF-SPVEKMPLVEVIPHAKTSAETIATTVALAKKQGKTPIVVR 489 (708)
T ss_pred ceEEEecC-CccccCceEEEECCCCCCHHHHHHHHHHHHHcCCceEEEe
Confidence 2222 2221 455 667887777777777888888775443
No 55
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.45 E-value=2.1e-06 Score=81.86 Aligned_cols=145 Identities=18% Similarity=0.182 Sum_probs=83.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHh---Hhhh---ccC---------CcccE
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAME---LEDS---LFP---------LLREV 160 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~D---L~d~---~~~---------~~~~v 160 (337)
.+||+|||+ |.+|..+|..++..+. .|.+ +|. +++.++..... +.+. ... ...++
T Consensus 3 ~~kIaViGa-G~mG~~iA~~la~~G~-----~V~l--~d~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 72 (287)
T PRK08293 3 IKNVTVAGA-GVLGSQIAFQTAFHGF-----DVTI--YDI--SDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRI 72 (287)
T ss_pred ccEEEEECC-CHHHHHHHHHHHhcCC-----eEEE--EeC--CHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCe
Confidence 469999995 9999999999998775 2554 333 33332221111 1110 000 11355
Q ss_pred EEecCcccccCCCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchh-HHHHHHHHCC--
Q 019713 161 KIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNT-NALICLKNAP-- 237 (337)
Q Consensus 161 ~i~t~~~eal~dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~-~t~i~~k~s~-- 237 (337)
+.+++..+++++||+||++. .++.++.+++.+.+.+++.++++ +++|.... ++.++ +...
T Consensus 73 ~~~~d~~~a~~~aDlVieav--------------pe~~~~k~~~~~~l~~~~~~~~i--i~sntSt~~~~~~~-~~~~~~ 135 (287)
T PRK08293 73 TLTTDLAEAVKDADLVIEAV--------------PEDPEIKGDFYEELAKVAPEKTI--FATNSSTLLPSQFA-EATGRP 135 (287)
T ss_pred EEeCCHHHHhcCCCEEEEec--------------cCCHHHHHHHHHHHHhhCCCCCE--EEECcccCCHHHHH-hhcCCc
Confidence 66665556799999999985 23466777778888887666764 45666543 22332 2111
Q ss_pred ---------CCCC-----CeE-EecCchhHHHHHHHHHHHhCCCc
Q 019713 238 ---------SIPA-----KNF-HALTRLDENRAKCQLALKAGVFY 267 (337)
Q Consensus 238 ---------~~p~-----kvI-G~gT~LDs~R~~~~lA~~lgv~~ 267 (337)
+.+. +++ +..|.-++...-..+.+.+|..|
T Consensus 136 ~r~vg~Hf~~p~~~~~lvevv~~~~t~~~~~~~~~~~~~~~Gk~p 180 (287)
T PRK08293 136 EKFLALHFANEIWKNNTAEIMGHPGTDPEVFDTVVAFAKAIGMVP 180 (287)
T ss_pred ccEEEEcCCCCCCcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCeE
Confidence 1111 223 34566666555556667788665
No 56
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.45 E-value=1.3e-06 Score=82.89 Aligned_cols=145 Identities=17% Similarity=0.096 Sum_probs=84.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHh-H------H--------HhHhhhccCCcccE
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEG-V------A--------MELEDSLFPLLREV 160 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g-~------a--------~DL~d~~~~~~~~v 160 (337)
+.||+|||+ |.||..++..++..+. .|.+ +| .+.+.++. . . ++.++.. ....++
T Consensus 3 ~~kI~VIG~-G~mG~~ia~~la~~g~-----~V~~--~d--~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~-~~~~~l 71 (282)
T PRK05808 3 IQKIGVIGA-GTMGNGIAQVCAVAGY-----DVVM--VD--ISDAAVDRGLATITKSLDRLVKKGKMTEADKE-AALARI 71 (282)
T ss_pred ccEEEEEcc-CHHHHHHHHHHHHCCC-----ceEE--Ee--CCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHH-HHHhCe
Confidence 458999995 9999999999998875 2554 33 34444321 0 0 1111111 011245
Q ss_pred EEecCcccccCCCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHHHHHHHHC----
Q 019713 161 KIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNA---- 236 (337)
Q Consensus 161 ~i~t~~~eal~dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t~i~~k~s---- 236 (337)
+.++ +++++++||+||++. .++..+.+++.+.|.+++.+++++ +||-..+-...+.+..
T Consensus 72 ~~~~-~~~~~~~aDlVi~av--------------~e~~~~k~~~~~~l~~~~~~~~il--~s~ts~~~~~~la~~~~~~~ 134 (282)
T PRK05808 72 TGTT-DLDDLKDADLVIEAA--------------TENMDLKKKIFAQLDEIAKPEAIL--ATNTSSLSITELAAATKRPD 134 (282)
T ss_pred EEeC-CHHHhccCCeeeecc--------------cccHHHHHHHHHHHHhhCCCCcEE--EECCCCCCHHHHHHhhCCCc
Confidence 5554 467799999999985 334566778888888887778754 6766554222222222
Q ss_pred ------CCCCC------CeE-EecCchhHHHHHHHHHHHhCCCcc
Q 019713 237 ------PSIPA------KNF-HALTRLDENRAKCQLALKAGVFYD 268 (337)
Q Consensus 237 ------~~~p~------kvI-G~gT~LDs~R~~~~lA~~lgv~~~ 268 (337)
+..|. +++ |.+|.-++...-..+.+.+|..|-
T Consensus 135 r~ig~h~~~P~~~~~~vev~~g~~t~~e~~~~~~~l~~~lGk~pv 179 (282)
T PRK05808 135 KVIGMHFFNPVPVMKLVEIIRGLATSDATHEAVEALAKKIGKTPV 179 (282)
T ss_pred ceEEeeccCCcccCccEEEeCCCCCCHHHHHHHHHHHHHcCCeeE
Confidence 11111 222 444555554455566677887663
No 57
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=98.44 E-value=4.3e-06 Score=79.85 Aligned_cols=106 Identities=16% Similarity=0.151 Sum_probs=63.8
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhH-------HHhHhhhcc-------CCccc
Q 019713 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGV-------AMELEDSLF-------PLLRE 159 (337)
Q Consensus 94 ~~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~-------a~DL~d~~~-------~~~~~ 159 (337)
.+..||+|||+ |.||..+|..|+..+. .|.+ +| .+.+.++.. ..++.+... .....
T Consensus 2 ~~~~~V~vIG~-G~mG~~iA~~l~~~G~-----~V~~--~d--~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 71 (295)
T PLN02545 2 AEIKKVGVVGA-GQMGSGIAQLAAAAGM-----DVWL--LD--SDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGR 71 (295)
T ss_pred CCcCEEEEECC-CHHHHHHHHHHHhcCC-----eEEE--Ee--CCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhc
Confidence 45578999995 9999999999998774 2544 33 343333211 011111000 00112
Q ss_pred EEEecCcccccCCCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCch
Q 019713 160 VKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN 226 (337)
Q Consensus 160 v~i~t~~~eal~dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd 226 (337)
+... ++++++++||+||++. .++.++...+.+.+.+++.++++ ++||-..
T Consensus 72 ~~~~-~~~~~~~~aD~Vieav--------------~e~~~~k~~v~~~l~~~~~~~~i--l~s~tS~ 121 (295)
T PLN02545 72 IRCT-TNLEELRDADFIIEAI--------------VESEDLKKKLFSELDRICKPSAI--LASNTSS 121 (295)
T ss_pred eEee-CCHHHhCCCCEEEEcC--------------ccCHHHHHHHHHHHHhhCCCCcE--EEECCCC
Confidence 3343 4567899999999985 33456666777777777677764 4455544
No 58
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=98.43 E-value=2.3e-06 Score=88.02 Aligned_cols=146 Identities=16% Similarity=0.086 Sum_probs=91.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHH----hHhhhc--c--------CCcccE
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAM----ELEDSL--F--------PLLREV 160 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~----DL~d~~--~--------~~~~~v 160 (337)
+..||+|||+ |.||..+|..++..|+ +|.+ + |++++.++.... .+.... . ..+.++
T Consensus 4 ~~~kV~VIGa-G~MG~gIA~~la~aG~-----~V~l--~--d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i 73 (503)
T TIGR02279 4 NVVTVAVIGA-GAMGAGIAQVAASAGH-----QVLL--Y--DIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRL 73 (503)
T ss_pred CccEEEEECc-CHHHHHHHHHHHhCCC-----eEEE--E--eCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhcc
Confidence 4568999995 9999999999999886 3555 3 344444432100 011100 0 012345
Q ss_pred EEecCcccccCCCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchh-HHHHH-------
Q 019713 161 KIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNT-NALIC------- 232 (337)
Q Consensus 161 ~i~t~~~eal~dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~-~t~i~------- 232 (337)
+.++ +++++++||+||.+. .++.++.+.+...+.+++.+++ |++||.... ++.++
T Consensus 74 ~~~~-~~~~l~~aDlVIEav--------------~E~~~vK~~vf~~l~~~~~~~~--IlasnTStl~i~~iA~~~~~p~ 136 (503)
T TIGR02279 74 IPVT-DLHALADAGLVIEAI--------------VENLEVKKALFAQLEELCPADT--IIASNTSSLSITAIAAGLARPE 136 (503)
T ss_pred EEeC-CHHHhCCCCEEEEcC--------------cCcHHHHHHHHHHHHhhCCCCe--EEEECCCCCCHHHHHHhcCccc
Confidence 5554 567899999999974 4557788888888999876776 478887654 33333
Q ss_pred ----HHHCCCCCC-----CeE-EecCchhHHHHHHHHHHHhCCCcc
Q 019713 233 ----LKNAPSIPA-----KNF-HALTRLDENRAKCQLALKAGVFYD 268 (337)
Q Consensus 233 ----~k~s~~~p~-----kvI-G~gT~LDs~R~~~~lA~~lgv~~~ 268 (337)
.++. +.++ +++ |..|.-++......+.+.+|..|-
T Consensus 137 r~~G~HFf-~Papv~~LvEvv~g~~Ts~e~~~~~~~l~~~lgk~pv 181 (503)
T TIGR02279 137 RVAGLHFF-NPAPVMALVEVVSGLATAAEVAEQLYETALAWGKQPV 181 (503)
T ss_pred ceEEEecc-CccccCceEEEeCCCCCCHHHHHHHHHHHHHcCCeee
Confidence 2232 2112 334 344677776666777888987663
No 59
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.34 E-value=5.7e-06 Score=79.46 Aligned_cols=108 Identities=14% Similarity=0.151 Sum_probs=62.8
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhc---c------CCcccEEEe
Q 019713 93 WKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSL---F------PLLREVKIG 163 (337)
Q Consensus 93 ~~~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~---~------~~~~~v~i~ 163 (337)
|++.+||+|||+ |.||.+++..|+..+. .|.+ + |.+.+.++.....++... . ....+++.+
T Consensus 1 ~~~~~~I~vIGa-G~mG~~iA~~l~~~g~-----~V~~--~--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 70 (311)
T PRK06130 1 MNPIQNLAIIGA-GTMGSGIAALFARKGL-----QVVL--I--DVMEGALERARGVIERALGVYAPLGIASAGMGRIRME 70 (311)
T ss_pred CCCccEEEEECC-CHHHHHHHHHHHhCCC-----eEEE--E--ECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEe
Confidence 355679999995 9999999999998774 2544 3 334444332221111100 0 011234555
Q ss_pred cCcccccCCCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCch
Q 019713 164 INPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN 226 (337)
Q Consensus 164 t~~~eal~dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd 226 (337)
++..+++++||+||++.- ....+..++...+..+..++++ ++||...
T Consensus 71 ~~~~~~~~~aDlVi~av~--------------~~~~~~~~v~~~l~~~~~~~~i--i~s~tsg 117 (311)
T PRK06130 71 AGLAAAVSGADLVIEAVP--------------EKLELKRDVFARLDGLCDPDTI--FATNTSG 117 (311)
T ss_pred CCHHHHhccCCEEEEecc--------------CcHHHHHHHHHHHHHhCCCCcE--EEECCCC
Confidence 555567899999999851 1234455566667776556654 4455443
No 60
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=98.33 E-value=6.3e-06 Score=78.65 Aligned_cols=104 Identities=14% Similarity=0.188 Sum_probs=64.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHh-------Hhhhc--cC--------Ccc
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAME-------LEDSL--FP--------LLR 158 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~D-------L~d~~--~~--------~~~ 158 (337)
..||+|||+ |.||..+|..|+..|. .|.+ + |.+++.++..... +.... .. ...
T Consensus 3 i~~I~ViGa-G~mG~~iA~~la~~G~-----~V~l--~--d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~ 72 (291)
T PRK06035 3 IKVIGVVGS-GVMGQGIAQVFARTGY-----DVTI--V--DVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMA 72 (291)
T ss_pred CcEEEEECc-cHHHHHHHHHHHhcCC-----eEEE--E--eCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHh
Confidence 368999995 9999999999998875 2554 3 3444444321111 11000 00 112
Q ss_pred cEEEecCcccccCCCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCch
Q 019713 159 EVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN 226 (337)
Q Consensus 159 ~v~i~t~~~eal~dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd 226 (337)
++..++ +.+++++||+||++. ..+.++.+++.+.|.+++.+++++ +||...
T Consensus 73 ~i~~~~-~~~~~~~aDlVieav--------------~e~~~~k~~~~~~l~~~~~~~~il--~S~tsg 123 (291)
T PRK06035 73 RIRTST-SYESLSDADFIVEAV--------------PEKLDLKRKVFAELERNVSPETII--ASNTSG 123 (291)
T ss_pred CcEeeC-CHHHhCCCCEEEEcC--------------cCcHHHHHHHHHHHHhhCCCCeEE--EEcCCC
Confidence 344444 447899999999985 223566777888888886777754 465543
No 61
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=98.33 E-value=4.6e-06 Score=85.96 Aligned_cols=147 Identities=14% Similarity=-0.002 Sum_probs=88.6
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhH---HHhHhhh-c--c--------CCccc
Q 019713 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGV---AMELEDS-L--F--------PLLRE 159 (337)
Q Consensus 94 ~~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~---a~DL~d~-~--~--------~~~~~ 159 (337)
.+..||+|||| |.||..+|..++..|+ +|.+ + |++.+.++.. ..++.+. . . ..+.+
T Consensus 5 ~~i~~V~VIGa-G~MG~gIA~~la~aG~-----~V~l--~--D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~ 74 (507)
T PRK08268 5 PSIATVAVIGA-GAMGAGIAQVAAQAGH-----TVLL--Y--DARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALAR 74 (507)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCC-----eEEE--E--eCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhC
Confidence 34578999995 9999999999998886 3554 3 3344443321 1111100 0 0 11224
Q ss_pred EEEecCcccccCCCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchh-HHHHHH-----
Q 019713 160 VKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNT-NALICL----- 233 (337)
Q Consensus 160 v~i~t~~~eal~dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~-~t~i~~----- 233 (337)
++.++ +++++++||+||.+. .++.++.+.+...+.++++++++ ++||...+ ++.++.
T Consensus 75 i~~~~-~~~~~~~aDlViEav--------------~E~~~vK~~vf~~l~~~~~~~ai--lasntStl~i~~la~~~~~p 137 (507)
T PRK08268 75 LRPVE-ALADLADCDLVVEAI--------------VERLDVKQALFAQLEAIVSPDCI--LATNTSSLSITAIAAALKHP 137 (507)
T ss_pred eEEeC-CHHHhCCCCEEEEcC--------------cccHHHHHHHHHHHHhhCCCCcE--EEECCCCCCHHHHHhhcCCc
Confidence 66654 567899999999974 45677778888889988667774 56676533 223321
Q ss_pred ------HHCCCCCC-----CeE-EecCchhHHHHHHHHHHHhCCCcc
Q 019713 234 ------KNAPSIPA-----KNF-HALTRLDENRAKCQLALKAGVFYD 268 (337)
Q Consensus 234 ------k~s~~~p~-----kvI-G~gT~LDs~R~~~~lA~~lgv~~~ 268 (337)
++. +.++ +++ |..|.-++......+++.+|..|-
T Consensus 138 ~r~~G~hff-~Pa~v~~LvEvv~g~~Ts~~~~~~~~~l~~~lgk~pv 183 (507)
T PRK08268 138 ERVAGLHFF-NPVPLMKLVEVVSGLATDPAVADALYALARAWGKTPV 183 (507)
T ss_pred ccEEEEeec-CCcccCeeEEEeCCCCCCHHHHHHHHHHHHHcCCceE
Confidence 122 1111 233 234677776666677889997763
No 62
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.31 E-value=5.7e-06 Score=78.93 Aligned_cols=105 Identities=15% Similarity=0.145 Sum_probs=63.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhh----c--cC--------CcccE
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDS----L--FP--------LLREV 160 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~----~--~~--------~~~~v 160 (337)
+.+||+|||+ |.+|..+|..|+..+. .|.+ + |++++.++.....+... . .. ...++
T Consensus 3 ~~~kI~vIGa-G~mG~~iA~~la~~G~-----~V~l--~--d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i 72 (292)
T PRK07530 3 AIKKVGVIGA-GQMGNGIAHVCALAGY-----DVLL--N--DVSADRLEAGLATINGNLARQVAKGKISEEARAAALARI 72 (292)
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHCCC-----eEEE--E--eCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCe
Confidence 3468999995 9999999999998875 2554 3 34444443221111110 0 00 01235
Q ss_pred EEecCcccccCCCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCch
Q 019713 161 KIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN 226 (337)
Q Consensus 161 ~i~t~~~eal~dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd 226 (337)
+.++ +++++++||+||++. .++.++.+.+.+.|.+.+.+++++ +||...
T Consensus 73 ~~~~-~~~~~~~aD~Vieav--------------pe~~~~k~~~~~~l~~~~~~~~ii--~s~ts~ 121 (292)
T PRK07530 73 STAT-DLEDLADCDLVIEAA--------------TEDETVKRKIFAQLCPVLKPEAIL--ATNTSS 121 (292)
T ss_pred EeeC-CHHHhcCCCEEEEcC--------------cCCHHHHHHHHHHHHhhCCCCcEE--EEcCCC
Confidence 5544 467899999999985 122355556666777776777754 456543
No 63
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.24 E-value=1.1e-05 Score=76.78 Aligned_cols=103 Identities=15% Similarity=0.172 Sum_probs=62.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhh----hc-c---------CCcccEEE
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELED----SL-F---------PLLREVKI 162 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d----~~-~---------~~~~~v~i 162 (337)
.||+|||+ |.||..+|..|+..+. .|.++ | ++++.++.....+.+ .. . ....+++.
T Consensus 2 ~~V~VIG~-G~mG~~iA~~la~~G~-----~V~~~--d--~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~ 71 (288)
T PRK09260 2 EKLVVVGA-GVMGRGIAYVFAVSGF-----QTTLV--D--IKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSY 71 (288)
T ss_pred cEEEEECc-cHHHHHHHHHHHhCCC-----cEEEE--e--CCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE
Confidence 58999995 9999999999998775 25543 3 343443322111110 00 0 01123556
Q ss_pred ecCcccccCCCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCc
Q 019713 163 GINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC 225 (337)
Q Consensus 163 ~t~~~eal~dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPv 225 (337)
+++..+++++||+||++.. ++..+.+.+...+.+++.++++ +++|..
T Consensus 72 ~~~~~~~~~~aD~Vi~avp--------------e~~~~k~~~~~~l~~~~~~~~i--l~~~tS 118 (288)
T PRK09260 72 SLDLKAAVADADLVIEAVP--------------EKLELKKAVFETADAHAPAECY--IATNTS 118 (288)
T ss_pred eCcHHHhhcCCCEEEEecc--------------CCHHHHHHHHHHHHhhCCCCcE--EEEcCC
Confidence 6555578999999998752 2345556666667777677764 344443
No 64
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=98.15 E-value=6.4e-06 Score=71.81 Aligned_cols=97 Identities=24% Similarity=0.251 Sum_probs=61.9
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhc------cCCcccEEEecCcccccC
Q 019713 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSL------FPLLREVKIGINPYELFE 171 (337)
Q Consensus 98 KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~------~~~~~~v~i~t~~~eal~ 171 (337)
||+|+|| |+.|.++|..|+..+. .|.| +.. +++.++... -.+.. ..+..++.+++|..++++
T Consensus 1 KI~ViGa-G~~G~AlA~~la~~g~-----~V~l--~~~--~~~~~~~i~--~~~~n~~~~~~~~l~~~i~~t~dl~~a~~ 68 (157)
T PF01210_consen 1 KIAVIGA-GNWGTALAALLADNGH-----EVTL--WGR--DEEQIEEIN--ETRQNPKYLPGIKLPENIKATTDLEEALE 68 (157)
T ss_dssp EEEEESS-SHHHHHHHHHHHHCTE-----EEEE--ETS--CHHHHHHHH--HHTSETTTSTTSBEETTEEEESSHHHHHT
T ss_pred CEEEECc-CHHHHHHHHHHHHcCC-----EEEE--Eec--cHHHHHHHH--HhCCCCCCCCCcccCcccccccCHHHHhC
Confidence 8999995 9999999999999884 3555 333 333333221 11211 112246778877778999
Q ss_pred CCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 019713 172 DAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (337)
Q Consensus 172 dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvt 222 (337)
+||+||++. | ...++++++.|..+..++..+|+++
T Consensus 69 ~ad~Iiiav--P--------------s~~~~~~~~~l~~~l~~~~~ii~~~ 103 (157)
T PF01210_consen 69 DADIIIIAV--P--------------SQAHREVLEQLAPYLKKGQIIISAT 103 (157)
T ss_dssp T-SEEEE-S-----------------GGGHHHHHHHHTTTSHTT-EEEETS
T ss_pred cccEEEecc--c--------------HHHHHHHHHHHhhccCCCCEEEEec
Confidence 999999874 2 2346778888888765666666654
No 65
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=98.14 E-value=9.8e-05 Score=67.62 Aligned_cols=96 Identities=25% Similarity=0.240 Sum_probs=63.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcE
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADv 175 (337)
||+++|+| +|++|++++..++..+. +|.+- .-+.++++++.+.++. + .++. ....++.++||+
T Consensus 1 m~~~~i~G-tGniG~alA~~~a~ag~-----eV~ig---s~r~~~~~~a~a~~l~----~---~i~~-~~~~dA~~~aDV 63 (211)
T COG2085 1 MMIIAIIG-TGNIGSALALRLAKAGH-----EVIIG---SSRGPKALAAAAAALG----P---LITG-GSNEDAAALADV 63 (211)
T ss_pred CcEEEEec-cChHHHHHHHHHHhCCC-----eEEEe---cCCChhHHHHHHHhhc----c---cccc-CChHHHHhcCCE
Confidence 68999999 59999999999999885 35542 2334555555444333 2 2333 346789999999
Q ss_pred EEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCc
Q 019713 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC 225 (337)
Q Consensus 176 VIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPv 225 (337)
||++. | .+-+.++.+.++.. -.+-+||-+|||.
T Consensus 64 VvLAV--P--------------~~a~~~v~~~l~~~-~~~KIvID~tnp~ 96 (211)
T COG2085 64 VVLAV--P--------------FEAIPDVLAELRDA-LGGKIVIDATNPI 96 (211)
T ss_pred EEEec--c--------------HHHHHhHHHHHHHH-hCCeEEEecCCCc
Confidence 99985 2 12234444555543 2356889999994
No 66
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=98.12 E-value=2.8e-05 Score=71.32 Aligned_cols=104 Identities=21% Similarity=0.114 Sum_probs=63.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhcc--CCcccEEEecCcccccCCCc
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLF--PLLREVKIGINPYELFEDAE 174 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~--~~~~~v~i~t~~~eal~dAD 174 (337)
|||+|||++|.||.+++..|+..+. .|.+ + +++.++++..+.+..+... ....++.. ++..++++++|
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~-----~V~v--~--~r~~~~~~~l~~~~~~~~~~~g~~~~~~~-~~~~ea~~~aD 70 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGN-----KIII--G--SRDLEKAEEAAAKALEELGHGGSDIKVTG-ADNAEAAKRAD 70 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCC-----EEEE--E--EcCHHHHHHHHHHHHhhccccCCCceEEE-eChHHHHhcCC
Confidence 5899998569999999999998763 2544 2 4555666655444433211 11112222 34568899999
Q ss_pred EEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchh
Q 019713 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNT 227 (337)
Q Consensus 175 vVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~ 227 (337)
+||++.. .+.+.++.+.+... -.+.+||-++||.+.
T Consensus 71 vVilavp----------------~~~~~~~l~~l~~~-l~~~vvI~~~ngi~~ 106 (219)
T TIGR01915 71 VVILAVP----------------WDHVLKTLESLRDE-LSGKLVISPVVPLAS 106 (219)
T ss_pred EEEEECC----------------HHHHHHHHHHHHHh-ccCCEEEEeccCcee
Confidence 9999852 12234444445443 234578889999754
No 67
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=98.12 E-value=2.4e-05 Score=80.36 Aligned_cols=106 Identities=13% Similarity=0.155 Sum_probs=65.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhH-------h---hhccCCcccEEEecC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMEL-------E---DSLFPLLREVKIGIN 165 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL-------~---d~~~~~~~~v~i~t~ 165 (337)
.+||+|||+ |.||..+|..|+..|. .|.+ + |+++++++.....+ . ........+++..++
T Consensus 4 i~kIavIG~-G~MG~~iA~~la~~G~-----~V~v--~--D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~ 73 (495)
T PRK07531 4 IMKAACIGG-GVIGGGWAARFLLAGI-----DVAV--F--DPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCAS 73 (495)
T ss_pred cCEEEEECc-CHHHHHHHHHHHhCCC-----eEEE--E--eCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCC
Confidence 358999995 9999999999999886 2554 3 34444443221100 0 000000123556555
Q ss_pred cccccCCCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchh
Q 019713 166 PYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNT 227 (337)
Q Consensus 166 ~~eal~dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~ 227 (337)
..+++++||+|+.+. .++.++.+++...|.+++.+++ |+.||....
T Consensus 74 ~~ea~~~aD~Vieav--------------pe~~~vk~~l~~~l~~~~~~~~--iI~SsTsgi 119 (495)
T PRK07531 74 LAEAVAGADWIQESV--------------PERLDLKRRVLAEIDAAARPDA--LIGSSTSGF 119 (495)
T ss_pred HHHHhcCCCEEEEcC--------------cCCHHHHHHHHHHHHhhCCCCc--EEEEcCCCC
Confidence 557899999999874 2335666666677877766665 467777654
No 68
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=98.07 E-value=1.1e-05 Score=63.85 Aligned_cols=95 Identities=22% Similarity=0.243 Sum_probs=61.1
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEec-CcccccCCCcEE
Q 019713 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI-NPYELFEDAEWA 176 (337)
Q Consensus 98 KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t-~~~eal~dADvV 176 (337)
||+||| +|++|.+++..|...+... ..|.+. .++++++++..+.++. +.+.. +..+++++||+|
T Consensus 1 kI~iIG-~G~mg~al~~~l~~~g~~~--~~v~~~---~~r~~~~~~~~~~~~~---------~~~~~~~~~~~~~~advv 65 (96)
T PF03807_consen 1 KIGIIG-AGNMGSALARGLLASGIKP--HEVIIV---SSRSPEKAAELAKEYG---------VQATADDNEEAAQEADVV 65 (96)
T ss_dssp EEEEES-TSHHHHHHHHHHHHTTS-G--GEEEEE---EESSHHHHHHHHHHCT---------TEEESEEHHHHHHHTSEE
T ss_pred CEEEEC-CCHHHHHHHHHHHHCCCCc--eeEEee---ccCcHHHHHHHHHhhc---------cccccCChHHhhccCCEE
Confidence 899999 5999999999999988622 234432 2567777665433222 22233 567889999999
Q ss_pred EEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCC
Q 019713 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (337)
Q Consensus 177 Iitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNP 224 (337)
|++.- | +.+.++.+.+... .++..+|-++||
T Consensus 66 ilav~----p------------~~~~~v~~~i~~~-~~~~~vis~~ag 96 (96)
T PF03807_consen 66 ILAVK----P------------QQLPEVLSEIPHL-LKGKLVISIAAG 96 (96)
T ss_dssp EE-S-----G------------GGHHHHHHHHHHH-HTTSEEEEESTT
T ss_pred EEEEC----H------------HHHHHHHHHHhhc-cCCCEEEEeCCC
Confidence 99851 1 2355566666333 567788887775
No 69
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=97.91 E-value=3e-05 Score=69.69 Aligned_cols=120 Identities=17% Similarity=0.187 Sum_probs=66.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCC--------------cccEEE
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL--------------LREVKI 162 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~--------------~~~v~i 162 (337)
|||+||| .|.||..+|..|+..|. .|.- + |.++++.+.. .+...++ ..+++.
T Consensus 1 M~I~ViG-lGyvGl~~A~~lA~~G~-----~V~g--~--D~~~~~v~~l----~~g~~p~~E~~l~~ll~~~~~~~~l~~ 66 (185)
T PF03721_consen 1 MKIAVIG-LGYVGLPLAAALAEKGH-----QVIG--V--DIDEEKVEAL----NNGELPIYEPGLDELLKENVSAGRLRA 66 (185)
T ss_dssp -EEEEE---STTHHHHHHHHHHTTS-----EEEE--E---S-HHHHHHH----HTTSSSS-CTTHHHHHHHHHHTTSEEE
T ss_pred CEEEEEC-CCcchHHHHHHHHhCCC-----EEEE--E--eCChHHHHHH----hhccccccccchhhhhccccccccchh
Confidence 7999999 69999999999999986 2432 3 4444444332 1111110 136677
Q ss_pred ecCcccccCCCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC-Cchh----HHHHHHHHC
Q 019713 163 GINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN-PCNT----NALICLKNA 236 (337)
Q Consensus 163 ~t~~~eal~dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtN-Pvd~----~t~i~~k~s 236 (337)
+++..+++++||+++++.+.|..++. +. +...+.+..+.|.++..++.+||+=|. |..+ +..++.+..
T Consensus 67 t~~~~~ai~~adv~~I~VpTP~~~~~-~~-----Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~~~ 139 (185)
T PF03721_consen 67 TTDIEEAIKDADVVFICVPTPSDEDG-SP-----DLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPILEKRS 139 (185)
T ss_dssp ESEHHHHHHH-SEEEE----EBETTT-SB-----ETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHHHC
T ss_pred hhhhhhhhhccceEEEecCCCccccC-Cc-----cHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhhhhhhc
Confidence 77667779999999999987765422 11 234455566666666566666555553 4433 334445544
No 70
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=97.90 E-value=9.2e-05 Score=71.32 Aligned_cols=105 Identities=16% Similarity=0.171 Sum_probs=60.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHH-------hHhhhc-------cCCcccEE
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAM-------ELEDSL-------FPLLREVK 161 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~-------DL~d~~-------~~~~~~v~ 161 (337)
++||+||| +|.+|.+++..|+..|. .|.+ + |++++.++.... .+.+.. .....+++
T Consensus 2 ~~~V~VIG-~G~mG~~iA~~la~~G~-----~V~v--~--d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~ 71 (308)
T PRK06129 2 MGSVAIIG-AGLIGRAWAIVFARAGH-----EVRL--W--DADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIR 71 (308)
T ss_pred CcEEEEEC-ccHHHHHHHHHHHHCCC-----eeEE--E--eCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeE
Confidence 46899999 59999999999999875 2554 3 334333332100 011110 01122456
Q ss_pred EecCcccccCCCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCch
Q 019713 162 IGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN 226 (337)
Q Consensus 162 i~t~~~eal~dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd 226 (337)
.+++..+++++||+|+++.. .+..+.+.+.+.+.+...++++ +.||...
T Consensus 72 ~~~~~~~a~~~ad~Vi~avp--------------e~~~~k~~~~~~l~~~~~~~~i--i~ssts~ 120 (308)
T PRK06129 72 VTDSLADAVADADYVQESAP--------------ENLELKRALFAELDALAPPHAI--LASSTSA 120 (308)
T ss_pred EECcHHHhhCCCCEEEECCc--------------CCHHHHHHHHHHHHHhCCCcce--EEEeCCC
Confidence 66555568899999998751 2234455566667776444443 3566543
No 71
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=97.75 E-value=0.00062 Score=67.69 Aligned_cols=98 Identities=14% Similarity=0.106 Sum_probs=62.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHH-----------HhHhhhccCCcccEEEecC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVA-----------MELEDSLFPLLREVKIGIN 165 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a-----------~DL~d~~~~~~~~v~i~t~ 165 (337)
|||+||| +|.||-..+-.|+..|. .|.. +|+|. ++.+.+- .+|.... ....+.+.|+|
T Consensus 1 MkI~viG-tGYVGLv~g~~lA~~GH-----eVv~--vDid~--~KV~~ln~g~~PI~EpgLe~ll~~~-~~~gRl~fTtd 69 (414)
T COG1004 1 MKITVIG-TGYVGLVTGACLAELGH-----EVVC--VDIDE--SKVELLNKGISPIYEPGLEELLKEN-LASGRLRFTTD 69 (414)
T ss_pred CceEEEC-CchHHHHHHHHHHHcCC-----eEEE--EeCCH--HHHHHHhCCCCCCcCccHHHHHHhc-cccCcEEEEcC
Confidence 7999999 69999999999998774 2443 44543 3332210 1111111 11134788888
Q ss_pred cccccCCCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhh
Q 019713 166 PYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAV 211 (337)
Q Consensus 166 ~~eal~dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~ 211 (337)
-.++++++|+++++.|.|.++..+ .+...+...++.|.++
T Consensus 70 ~~~a~~~adv~fIavgTP~~~dg~------aDl~~V~ava~~i~~~ 109 (414)
T COG1004 70 YEEAVKDADVVFIAVGTPPDEDGS------ADLSYVEAVAKDIGEI 109 (414)
T ss_pred HHHHHhcCCEEEEEcCCCCCCCCC------ccHHHHHHHHHHHHhh
Confidence 788999999999999988765221 2345566666666665
No 72
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=97.73 E-value=0.00027 Score=67.75 Aligned_cols=105 Identities=21% Similarity=0.248 Sum_probs=60.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhc----cCCcccEEEecCcccccC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSL----FPLLREVKIGINPYELFE 171 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~----~~~~~~v~i~t~~~eal~ 171 (337)
||||+|||+ |.+|..++..|+..+. .+.+ + +++.+.++....+..+.. ......+...++..+.++
T Consensus 1 mmkI~iiG~-G~mG~~~a~~L~~~g~-----~V~~--~--~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (325)
T PRK00094 1 MMKIAVLGA-GSWGTALAIVLARNGH-----DVTL--W--ARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALA 70 (325)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCC-----EEEE--E--ECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHh
Confidence 579999995 9999999999998764 2544 3 344444443322110000 001113444445456788
Q ss_pred CCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCch
Q 019713 172 DAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN 226 (337)
Q Consensus 172 dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd 226 (337)
++|+||++... ..+.++.+.+..+..++.++|.++|-++
T Consensus 71 ~~D~vi~~v~~----------------~~~~~v~~~l~~~~~~~~~vi~~~ngv~ 109 (325)
T PRK00094 71 DADLILVAVPS----------------QALREVLKQLKPLLPPDAPIVWATKGIE 109 (325)
T ss_pred CCCEEEEeCCH----------------HHHHHHHHHHHhhcCCCCEEEEEeeccc
Confidence 99999987521 1234444455554456667777776544
No 73
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.71 E-value=0.00019 Score=70.35 Aligned_cols=107 Identities=14% Similarity=0.034 Sum_probs=66.2
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhc-----cCCcccEEEecCccc
Q 019713 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSL-----FPLLREVKIGINPYE 168 (337)
Q Consensus 94 ~~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~-----~~~~~~v~i~t~~~e 168 (337)
++++||+|||| |.+|..++..|+..+. +.+.. ++++..+....+-.... ..+..++..+++..+
T Consensus 5 ~~~mkI~IiGa-Ga~G~alA~~La~~g~------v~l~~----~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~ 73 (341)
T PRK12439 5 KREPKVVVLGG-GSWGTTVASICARRGP------TLQWV----RSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFAE 73 (341)
T ss_pred cCCCeEEEECC-CHHHHHHHHHHHHCCC------EEEEe----CCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHH
Confidence 56789999995 9999999999997762 44432 23333332211100000 011124566666667
Q ss_pred ccCCCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchh
Q 019713 169 LFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNT 227 (337)
Q Consensus 169 al~dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~ 227 (337)
+++++|+||++.- ...++++.+.|+.+..++..+|.++|-.+.
T Consensus 74 a~~~aDlVilavp----------------s~~~~~vl~~i~~~l~~~~~vIsl~kGi~~ 116 (341)
T PRK12439 74 AANCADVVVMGVP----------------SHGFRGVLTELAKELRPWVPVVSLVKGLEQ 116 (341)
T ss_pred HHhcCCEEEEEeC----------------HHHHHHHHHHHHhhcCCCCEEEEEEeCCcC
Confidence 8999999998751 234566666666655567778888886653
No 74
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=97.65 E-value=0.00022 Score=62.33 Aligned_cols=65 Identities=22% Similarity=0.332 Sum_probs=43.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcE
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADv 175 (337)
|+||+||| .|.+|+.++..|+..+. .|.. + |++.++++.. .+. ......+..+.++++|+
T Consensus 1 m~~Ig~IG-lG~mG~~~a~~L~~~g~-----~v~~--~--d~~~~~~~~~----~~~------g~~~~~s~~e~~~~~dv 60 (163)
T PF03446_consen 1 MMKIGFIG-LGNMGSAMARNLAKAGY-----EVTV--Y--DRSPEKAEAL----AEA------GAEVADSPAEAAEQADV 60 (163)
T ss_dssp -BEEEEE---SHHHHHHHHHHHHTTT-----EEEE--E--ESSHHHHHHH----HHT------TEEEESSHHHHHHHBSE
T ss_pred CCEEEEEc-hHHHHHHHHHHHHhcCC-----eEEe--e--ccchhhhhhh----HHh------hhhhhhhhhhHhhcccc
Confidence 68999999 59999999999998876 2443 3 4555565543 211 14555567788899999
Q ss_pred EEEec
Q 019713 176 ALLIG 180 (337)
Q Consensus 176 VIita 180 (337)
|+++-
T Consensus 61 vi~~v 65 (163)
T PF03446_consen 61 VILCV 65 (163)
T ss_dssp EEE-S
T ss_pred eEeec
Confidence 99864
No 75
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=97.62 E-value=0.00048 Score=67.11 Aligned_cols=111 Identities=19% Similarity=0.173 Sum_probs=72.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhh--ccC------CcccEEEecCcc
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDS--LFP------LLREVKIGINPY 167 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~--~~~------~~~~v~i~t~~~ 167 (337)
++||+|+|| |.-|.++|..|+..+. +|.|.-.+ ++..+ |+... ... +...+..++|..
T Consensus 1 ~~kI~ViGa-GswGTALA~~la~ng~-----~V~lw~r~----~~~~~----~i~~~~~N~~yLp~i~lp~~l~at~Dl~ 66 (329)
T COG0240 1 MMKIAVIGA-GSWGTALAKVLARNGH-----EVRLWGRD----EEIVA----EINETRENPKYLPGILLPPNLKATTDLA 66 (329)
T ss_pred CceEEEEcC-ChHHHHHHHHHHhcCC-----eeEEEecC----HHHHH----HHHhcCcCccccCCccCCcccccccCHH
Confidence 479999995 9999999999999883 36665332 22222 22221 111 224566778888
Q ss_pred cccCCCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC-----CCchhHHHHHHHHC
Q 019713 168 ELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG-----NPCNTNALICLKNA 236 (337)
Q Consensus 168 eal~dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvt-----NPvd~~t~i~~k~s 236 (337)
+++++||+||++. | .+.++++.+.++.+-.++++++.++ ++...+..++.+..
T Consensus 67 ~a~~~ad~iv~av--P--------------s~~~r~v~~~l~~~l~~~~~iv~~sKGie~~t~~l~seii~e~l 124 (329)
T COG0240 67 EALDGADIIVIAV--P--------------SQALREVLRQLKPLLLKDAIIVSATKGLEPETGRLLSEIIEEEL 124 (329)
T ss_pred HHHhcCCEEEEEC--C--------------hHHHHHHHHHHhhhccCCCeEEEEeccccCCCcchHHHHHHHHc
Confidence 9999999999974 2 3556666666654445666777666 34455666666654
No 76
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=97.60 E-value=0.0011 Score=66.35 Aligned_cols=114 Identities=11% Similarity=0.151 Sum_probs=61.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHh--------HhhhccCCcccEEEecCccc
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAME--------LEDSLFPLLREVKIGINPYE 168 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~D--------L~d~~~~~~~~v~i~t~~~e 168 (337)
|||+||| +|.||..+|..++. +. .|..+ |+++++++..... +++.......+++.+++..+
T Consensus 1 mkI~VIG-lGyvGl~~A~~lA~-G~-----~Vigv----D~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~ 69 (388)
T PRK15057 1 MKITISG-TGYVGLSNGLLIAQ-NH-----EVVAL----DILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNE 69 (388)
T ss_pred CEEEEEC-CCHHHHHHHHHHHh-CC-----cEEEE----ECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhh
Confidence 5899999 59999999987775 43 25543 4444554432211 11100001123444455567
Q ss_pred ccCCCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC-CCchh
Q 019713 169 LFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG-NPCNT 227 (337)
Q Consensus 169 al~dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvt-NPvd~ 227 (337)
+.++||+||++...|-...... -+...+++..+.|.+. .++.+||+-| =|..+
T Consensus 70 ~~~~ad~vii~Vpt~~~~k~~~-----~dl~~v~~v~~~i~~~-~~g~lVV~~STv~pgt 123 (388)
T PRK15057 70 AYRDADYVIIATPTDYDPKTNY-----FNTSSVESVIKDVVEI-NPYAVMVIKSTVPVGF 123 (388)
T ss_pred hhcCCCEEEEeCCCCCccCCCC-----cChHHHHHHHHHHHhc-CCCCEEEEeeecCCch
Confidence 7899999999876553111111 1233444444555553 5665555444 34443
No 77
>PRK07680 late competence protein ComER; Validated
Probab=97.57 E-value=0.00072 Score=63.91 Aligned_cols=100 Identities=10% Similarity=0.179 Sum_probs=62.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcEE
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADvV 176 (337)
|||+|||+ |.||..++..|...+.+.. ..+.+ .+++.++++.. .+.. ..+....+..+.++++|+|
T Consensus 1 m~I~iIG~-G~mG~ala~~L~~~g~~~~-~~v~v----~~r~~~~~~~~----~~~~----~g~~~~~~~~~~~~~aDiV 66 (273)
T PRK07680 1 MNIGFIGT-GNMGTILIEAFLESGAVKP-SQLTI----TNRTPAKAYHI----KERY----PGIHVAKTIEEVISQSDLI 66 (273)
T ss_pred CEEEEECc-cHHHHHHHHHHHHCCCCCc-ceEEE----ECCCHHHHHHH----HHHc----CCeEEECCHHHHHHhCCEE
Confidence 48999995 9999999999988775321 12433 24555554432 1111 1234445556678999999
Q ss_pred EEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCch
Q 019713 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN 226 (337)
Q Consensus 177 Iitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd 226 (337)
|++.- -..+.++.+.+..+..++.+||-++|++.
T Consensus 67 ilav~----------------p~~~~~vl~~l~~~l~~~~~iis~~ag~~ 100 (273)
T PRK07680 67 FICVK----------------PLDIYPLLQKLAPHLTDEHCLVSITSPIS 100 (273)
T ss_pred EEecC----------------HHHHHHHHHHHHhhcCCCCEEEEECCCCC
Confidence 99851 12244455555544345678888998764
No 78
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.56 E-value=0.00077 Score=66.88 Aligned_cols=80 Identities=11% Similarity=0.101 Sum_probs=51.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCC----CCCCCceEEEeccccchhhHHHhHHHhHhhhc--------cCCcccEEE
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEV----LGPDQPIALKLLGSERSLQALEGVAMELEDSL--------FPLLREVKI 162 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l----~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~--------~~~~~~v~i 162 (337)
+.+||+|||| |..|.++|..|+..+. |+. .|.|...+.+.+.++ .+.++++.. ..+..++..
T Consensus 10 ~~~ki~ViGa-G~wGtAlA~~l~~n~~~~~~~~~--~V~lw~~~~~~~~~~---~~~~in~~~~N~~ylp~~~Lp~ni~~ 83 (365)
T PTZ00345 10 GPLKVSVIGS-GNWGSAISKVVGENTQRNYIFHN--EVRMWVLEEIVEGEK---LSDIINTKHENVKYLPGIKLPDNIVA 83 (365)
T ss_pred CCCeEEEECC-CHHHHHHHHHHHhcCCcccCCCC--eEEEEEecccccchH---HHHHHHhcCCCcccCCCCcCCCceEE
Confidence 4579999995 9999999999998762 332 466654432211111 222333211 123456777
Q ss_pred ecCcccccCCCcEEEEec
Q 019713 163 GINPYELFEDAEWALLIG 180 (337)
Q Consensus 163 ~t~~~eal~dADvVIita 180 (337)
++|..+++++||+||++.
T Consensus 84 tsdl~eav~~aDiIvlAV 101 (365)
T PTZ00345 84 VSDLKEAVEDADLLIFVI 101 (365)
T ss_pred ecCHHHHHhcCCEEEEEc
Confidence 877778999999998874
No 79
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=97.55 E-value=0.00057 Score=70.03 Aligned_cols=122 Identities=13% Similarity=0.168 Sum_probs=69.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHh--------HhhhccC-CcccEEEecCc
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAME--------LEDSLFP-LLREVKIGINP 166 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~D--------L~d~~~~-~~~~v~i~t~~ 166 (337)
+|||+||| +|.||..+|-.|+..|.- ..|.. + |.++++.+.+-.. +++.... ...+.+.+++.
T Consensus 1 ~m~I~ViG-~GyvGl~~A~~lA~~g~g---~~V~g--v--D~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~ 72 (473)
T PLN02353 1 MVKICCIG-AGYVGGPTMAVIALKCPD---IEVVV--V--DISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDV 72 (473)
T ss_pred CCEEEEEC-CCHHHHHHHHHHHhcCCC---CeEEE--E--ECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCH
Confidence 57999999 599999999999987531 12433 3 3344444432111 1111000 11246677666
Q ss_pred ccccCCCcEEEEecccCCCCCC-chhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEe-CCCchh
Q 019713 167 YELFEDAEWALLIGAKPRGPGM-ERAGLLDINGQIFAEQGKALNAVASRNVKVIVV-GNPCNT 227 (337)
Q Consensus 167 ~eal~dADvVIitag~prk~g~-~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvv-tNPvd~ 227 (337)
.+++++||++|++.+.|.+... .. + -.-+..-+.+.++.|.++..++.+||+= |-|..+
T Consensus 73 ~~~i~~advi~I~V~TP~~~~g~~~-~-~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gt 133 (473)
T PLN02353 73 EKHVAEADIVFVSVNTPTKTRGLGA-G-KAADLTYWESAARMIADVSKSDKIVVEKSTVPVKT 133 (473)
T ss_pred HHHHhcCCEEEEEeCCCCCCCCCcC-C-CCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCCh
Confidence 6789999999999988864321 00 0 0113345666777777764444443322 456544
No 80
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=97.54 E-value=0.00069 Score=67.90 Aligned_cols=110 Identities=13% Similarity=0.132 Sum_probs=62.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhH--------hhhccC-C-cccEEEecCc
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMEL--------EDSLFP-L-LREVKIGINP 166 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL--------~d~~~~-~-~~~v~i~t~~ 166 (337)
|||+||| +|.||..+|..|+..|. .|.. + |++.++.+...... ++.... . ..+++.+++.
T Consensus 1 mkI~vIG-lG~~G~~lA~~La~~G~-----~V~~--~--d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~ 70 (411)
T TIGR03026 1 MKIAVIG-LGYVGLPLAALLADLGH-----EVTG--V--DIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDY 70 (411)
T ss_pred CEEEEEC-CCchhHHHHHHHHhcCC-----eEEE--E--ECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEECCH
Confidence 4899999 59999999999998775 2443 3 44445544322100 000000 0 1235555555
Q ss_pred ccccCCCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 019713 167 YELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (337)
Q Consensus 167 ~eal~dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvt 222 (337)
.+++++||+||++.+.|..... . -+...+.+..+.|.++..++.+||+.|
T Consensus 71 ~~~~~~advvii~vpt~~~~~~-~-----~d~~~v~~~~~~i~~~l~~g~lvi~~S 120 (411)
T TIGR03026 71 EDAIRDADVIIICVPTPLKEDG-S-----PDLSYVESAAETIAKHLRKGATVVLES 120 (411)
T ss_pred HHHHhhCCEEEEEeCCCCCCCC-C-----cChHHHHHHHHHHHHhcCCCCEEEEeC
Confidence 5679999999998876643211 1 123334444455555445565555544
No 81
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.52 E-value=0.00073 Score=65.38 Aligned_cols=103 Identities=15% Similarity=0.248 Sum_probs=61.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhc----cCCcccEEEecCccccc-C
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSL----FPLLREVKIGINPYELF-E 171 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~----~~~~~~v~i~t~~~eal-~ 171 (337)
|||+|||| |.+|..++..|+..+. .|.+. +++++.++....+-.+.. ..+..++..+++..+++ .
T Consensus 1 MkI~IiGa-Ga~G~ala~~L~~~g~-----~V~l~----~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 70 (326)
T PRK14620 1 MKISILGA-GSFGTAIAIALSSKKI-----SVNLW----GRNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSD 70 (326)
T ss_pred CEEEEECc-CHHHHHHHHHHHHCCC-----eEEEE----ecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhC
Confidence 58999995 9999999999998763 35543 334444433222100110 01223455665555666 5
Q ss_pred CCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHh-hcCCCeEEEEeCCCc
Q 019713 172 DAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNA-VASRNVKVIVVGNPC 225 (337)
Q Consensus 172 dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~-~a~p~aivIvvtNPv 225 (337)
++|+||++.- ..-+.++.+.+.. +..++..|+..+|=.
T Consensus 71 ~~Dliiiavk----------------s~~~~~~l~~l~~~~l~~~~~vv~~~nGi 109 (326)
T PRK14620 71 NATCIILAVP----------------TQQLRTICQQLQDCHLKKNTPILICSKGI 109 (326)
T ss_pred CCCEEEEEeC----------------HHHHHHHHHHHHHhcCCCCCEEEEEEcCe
Confidence 8999998751 2334555555554 435666777788766
No 82
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.51 E-value=0.00071 Score=65.56 Aligned_cols=77 Identities=26% Similarity=0.292 Sum_probs=47.4
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhh----ccCCcccEEEecCcccc
Q 019713 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDS----LFPLLREVKIGINPYEL 169 (337)
Q Consensus 94 ~~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~----~~~~~~~v~i~t~~~ea 169 (337)
..+|||+|||+ |.+|..++..|+..+. .|.+ + +++.++++.....-... ...+..++..+++..++
T Consensus 2 ~~~m~I~iIG~-G~mG~~ia~~L~~~G~-----~V~~--~--~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~ 71 (328)
T PRK14618 2 HHGMRVAVLGA-GAWGTALAVLAASKGV-----PVRL--W--ARRPEFAAALAAERENREYLPGVALPAELYPTADPEEA 71 (328)
T ss_pred CCCCeEEEECc-CHHHHHHHHHHHHCCC-----eEEE--E--eCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHH
Confidence 34679999995 9999999999998774 2554 3 34444444332111000 00111235555556677
Q ss_pred cCCCcEEEEec
Q 019713 170 FEDAEWALLIG 180 (337)
Q Consensus 170 l~dADvVIita 180 (337)
++++|+||++.
T Consensus 72 ~~~aD~Vi~~v 82 (328)
T PRK14618 72 LAGADFAVVAV 82 (328)
T ss_pred HcCCCEEEEEC
Confidence 89999999874
No 83
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=97.51 E-value=0.00087 Score=65.96 Aligned_cols=82 Identities=15% Similarity=0.122 Sum_probs=48.3
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCCCC---CCceEEEeccccc-hhhHHHhHHHhHhhhc----cCCcccEEEecCcccc
Q 019713 98 NIAVSGAAGMIANHLLFKLAAGEVLGP---DQPIALKLLGSER-SLQALEGVAMELEDSL----FPLLREVKIGINPYEL 169 (337)
Q Consensus 98 KI~IIGAaG~VG~~la~~L~~~~l~~e---~~~v~L~L~d~d~-~~~~l~g~a~DL~d~~----~~~~~~v~i~t~~~ea 169 (337)
||+|||| |..|.++|..|+..+...+ +..|.|+-.+.+. +++..+..-.+.+... ..+..+++.++|..++
T Consensus 1 kI~VIGa-G~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~ea 79 (342)
T TIGR03376 1 RVAVVGS-GNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEA 79 (342)
T ss_pred CEEEECc-CHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHHH
Confidence 7999995 9999999999998763221 1347665332111 2222222111111111 1123457777776788
Q ss_pred cCCCcEEEEec
Q 019713 170 FEDAEWALLIG 180 (337)
Q Consensus 170 l~dADvVIita 180 (337)
+++||+||++.
T Consensus 80 l~~ADiIIlAV 90 (342)
T TIGR03376 80 AKGADILVFVI 90 (342)
T ss_pred HhcCCEEEEEC
Confidence 99999998874
No 84
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=97.48 E-value=0.0008 Score=65.27 Aligned_cols=108 Identities=23% Similarity=0.214 Sum_probs=59.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhcc-C---CcccEEEecCcccccC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLF-P---LLREVKIGINPYELFE 171 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~-~---~~~~v~i~t~~~eal~ 171 (337)
++||+|||+ |.||..++..|+..|. .|.+ ++.+...+.+......+.+... . ...++..+ .+.++++
T Consensus 2 ~mkI~IiG~-G~mG~~~A~~L~~~G~-----~V~~--~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 72 (341)
T PRK08229 2 MARICVLGA-GSIGCYLGGRLAAAGA-----DVTL--IGRARIGDELRAHGLTLTDYRGRDVRVPPSAIAFS-TDPAALA 72 (341)
T ss_pred CceEEEECC-CHHHHHHHHHHHhcCC-----cEEE--EecHHHHHHHHhcCceeecCCCcceecccceeEec-cChhhcc
Confidence 479999995 9999999999998874 2554 3332111111100000100000 0 00123333 3447789
Q ss_pred CCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhH
Q 019713 172 DAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTN 228 (337)
Q Consensus 172 dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~ 228 (337)
++|+||++...+. ..++.+.|.....++.+|+..+|..+..
T Consensus 73 ~~D~vil~vk~~~----------------~~~~~~~l~~~~~~~~iii~~~nG~~~~ 113 (341)
T PRK08229 73 TADLVLVTVKSAA----------------TADAAAALAGHARPGAVVVSFQNGVRNA 113 (341)
T ss_pred CCCEEEEEecCcc----------------hHHHHHHHHhhCCCCCEEEEeCCCCCcH
Confidence 9999999863211 1233445555546777888888987643
No 85
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=97.46 E-value=0.00058 Score=64.96 Aligned_cols=107 Identities=14% Similarity=0.098 Sum_probs=59.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHH---hHhhhccCCcccEEEecCcccccCCC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAM---ELEDSLFPLLREVKIGINPYELFEDA 173 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~---DL~d~~~~~~~~v~i~t~~~eal~dA 173 (337)
|||+|+|+ |.+|..++..|+..+. .|.+. ++ .++++.... .+.+............++..+..+++
T Consensus 1 mkI~IiG~-G~iG~~~a~~L~~~g~-----~V~~~----~r-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (305)
T PRK12921 1 MRIAVVGA-GAVGGTFGGRLLEAGR-----DVTFL----VR-PKRAKALRERGLVIRSDHGDAVVPGPVITDPEELTGPF 69 (305)
T ss_pred CeEEEECC-CHHHHHHHHHHHHCCC-----ceEEE----ec-HHHHHHHHhCCeEEEeCCCeEEecceeecCHHHccCCC
Confidence 58999995 9999999999998764 25543 23 333332211 01100000000111223333445899
Q ss_pred cEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHHH
Q 019713 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNAL 230 (337)
Q Consensus 174 DvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t~ 230 (337)
|+||++...+ -..++.+.|..+..++..||.+.|.++....
T Consensus 70 d~vilavk~~----------------~~~~~~~~l~~~~~~~~~ii~~~nG~~~~~~ 110 (305)
T PRK12921 70 DLVILAVKAY----------------QLDAAIPDLKPLVGEDTVIIPLQNGIGQLEQ 110 (305)
T ss_pred CEEEEEeccc----------------CHHHHHHHHHhhcCCCCEEEEeeCCCChHHH
Confidence 9999875211 1344445555544567788889998865443
No 86
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=97.38 E-value=0.0013 Score=62.39 Aligned_cols=105 Identities=18% Similarity=0.165 Sum_probs=58.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHH---hHhhhccCCcccEEEecCcccccCCC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAM---ELEDSLFPLLREVKIGINPYELFEDA 173 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~---DL~d~~~~~~~~v~i~t~~~eal~dA 173 (337)
|||+|||| |.||..++..|+..+. .|.+. +++.+.++.... .+.+. ....++.. .++.++.+++
T Consensus 1 m~I~IiG~-G~~G~~~a~~L~~~g~-----~V~~~----~r~~~~~~~~~~~g~~~~~~--~~~~~~~~-~~~~~~~~~~ 67 (304)
T PRK06522 1 MKIAILGA-GAIGGLFGAALAQAGH-----DVTLV----ARRGAHLDALNENGLRLEDG--EITVPVLA-ADDPAELGPQ 67 (304)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCC-----eEEEE----ECChHHHHHHHHcCCcccCC--ceeecccC-CCChhHcCCC
Confidence 58999995 9999999999998763 35553 233333332211 11000 00001112 2333445899
Q ss_pred cEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHHH
Q 019713 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNAL 230 (337)
Q Consensus 174 DvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t~ 230 (337)
|+||++.... -..++.+.|..+-.++..||...|.++....
T Consensus 68 d~vila~k~~----------------~~~~~~~~l~~~l~~~~~iv~~~nG~~~~~~ 108 (304)
T PRK06522 68 DLVILAVKAY----------------QLPAALPSLAPLLGPDTPVLFLQNGVGHLEE 108 (304)
T ss_pred CEEEEecccc----------------cHHHHHHHHhhhcCCCCEEEEecCCCCcHHH
Confidence 9999985211 1233444444443566788899998875443
No 87
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.34 E-value=0.0019 Score=61.45 Aligned_cols=69 Identities=20% Similarity=0.301 Sum_probs=45.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcEE
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADvV 176 (337)
+||+||| +|+||.+++..|...+.+..+ .|.. .+++.++++.. .+.. .+...++..+.+++||+|
T Consensus 3 ~~IgfIG-~G~MG~aia~~L~~~g~~~~~-~I~v----~~r~~~~~~~l----~~~~-----g~~~~~~~~e~~~~aDiI 67 (272)
T PRK12491 3 KQIGFIG-CGNMGIAMIGGMINKNIVSPD-QIIC----SDLNVSNLKNA----SDKY-----GITITTNNNEVANSADIL 67 (272)
T ss_pred CeEEEEC-ccHHHHHHHHHHHHCCCCCCc-eEEE----ECCCHHHHHHH----HHhc-----CcEEeCCcHHHHhhCCEE
Confidence 5899999 599999999999988864321 2333 35555555432 1111 133444555678999999
Q ss_pred EEec
Q 019713 177 LLIG 180 (337)
Q Consensus 177 Iita 180 (337)
|++.
T Consensus 68 iLav 71 (272)
T PRK12491 68 ILSI 71 (272)
T ss_pred EEEe
Confidence 9875
No 88
>PLN02688 pyrroline-5-carboxylate reductase
Probab=97.32 E-value=0.002 Score=60.35 Aligned_cols=99 Identities=18% Similarity=0.253 Sum_probs=58.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcEE
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADvV 176 (337)
|||+||| .|.||..++..|...+...+ ..+..+ .+++.++++. +.+. .+.+..+..+.++++|+|
T Consensus 1 ~kI~~IG-~G~mG~a~a~~L~~~g~~~~---~~i~v~-~~r~~~~~~~----~~~~------g~~~~~~~~e~~~~aDvV 65 (266)
T PLN02688 1 FRVGFIG-AGKMAEAIARGLVASGVVPP---SRISTA-DDSNPARRDV----FQSL------GVKTAASNTEVVKSSDVI 65 (266)
T ss_pred CeEEEEC-CcHHHHHHHHHHHHCCCCCc---ceEEEE-eCCCHHHHHH----HHHc------CCEEeCChHHHHhcCCEE
Confidence 6899999 59999999999998775332 222222 1445455432 2211 233444556778899999
Q ss_pred EEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCch
Q 019713 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN 226 (337)
Q Consensus 177 Iitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd 226 (337)
|++. .| +.++++.+.+.....++..||..++...
T Consensus 66 il~v-~~---------------~~~~~vl~~l~~~~~~~~~iIs~~~g~~ 99 (266)
T PLN02688 66 ILAV-KP---------------QVVKDVLTELRPLLSKDKLLVSVAAGIT 99 (266)
T ss_pred EEEE-Cc---------------HHHHHHHHHHHhhcCCCCEEEEecCCCc
Confidence 9885 22 2244444455444356666666655543
No 89
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=97.30 E-value=0.0021 Score=67.12 Aligned_cols=118 Identities=14% Similarity=0.069 Sum_probs=65.6
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhh-----ccCCcccEEE--e-cC
Q 019713 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDS-----LFPLLREVKI--G-IN 165 (337)
Q Consensus 94 ~~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~-----~~~~~~~v~i--~-t~ 165 (337)
++.+.|.|+||+|.+|.+++..|+..|. .|.+. .++.++++....++.+. ......++.+ . -.
T Consensus 78 ~~gKvVLVTGATGgIG~aLAr~LLk~G~-----~Vval----~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLt 148 (576)
T PLN03209 78 KDEDLAFVAGATGKVGSRTVRELLKLGF-----RVRAG----VRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLE 148 (576)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC-----eEEEE----eCCHHHHHHHHHHhhhhccccccccccCceEEEEecCC
Confidence 4446899999999999999999988774 24432 34445544333323211 0000011111 1 11
Q ss_pred c----ccccCCCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 019713 166 P----YELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (337)
Q Consensus 166 ~----~eal~dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvt 222 (337)
+ .+++.++|+||.++|.......+-...+..|..-...+.+.+.+. .- ..||+++
T Consensus 149 D~esI~~aLggiDiVVn~AG~~~~~v~d~~~~~~VN~~Gt~nLl~Aa~~a-gV-gRIV~VS 207 (576)
T PLN03209 149 KPDQIGPALGNASVVICCIGASEKEVFDVTGPYRIDYLATKNLVDAATVA-KV-NHFILVT 207 (576)
T ss_pred CHHHHHHHhcCCCEEEEccccccccccchhhHHHHHHHHHHHHHHHHHHh-CC-CEEEEEc
Confidence 1 245789999999887543221121223455666667777777664 22 3566655
No 90
>PRK08655 prephenate dehydrogenase; Provisional
Probab=97.28 E-value=0.0038 Score=63.34 Aligned_cols=93 Identities=15% Similarity=0.163 Sum_probs=55.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcEE
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADvV 176 (337)
|||+||||.|.+|..++..|...+. .|.+ + +++.+.+...+.++ .+...++..+++.+||+|
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~-----~V~v--~--~r~~~~~~~~a~~~---------gv~~~~~~~e~~~~aDvV 62 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGF-----EVIV--T--GRDPKKGKEVAKEL---------GVEYANDNIDAAKDADIV 62 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCC-----EEEE--E--ECChHHHHHHHHHc---------CCeeccCHHHHhccCCEE
Confidence 5899998679999999999988664 2443 2 34444433222211 122334556778999999
Q ss_pred EEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 177 Iitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
|++... ..+.++.+.+..+..++++|+-+++
T Consensus 63 Ilavp~----------------~~~~~vl~~l~~~l~~~~iViDvsS 93 (437)
T PRK08655 63 IISVPI----------------NVTEDVIKEVAPHVKEGSLLMDVTS 93 (437)
T ss_pred EEecCH----------------HHHHHHHHHHHhhCCCCCEEEEccc
Confidence 997521 1223333444443356666666665
No 91
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=97.24 E-value=0.0011 Score=56.31 Aligned_cols=102 Identities=20% Similarity=0.211 Sum_probs=53.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCc
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dAD 174 (337)
..+||+|||| |.||.+++..|...+. .|.- .+ .++.+..+..+..+ ....+ .+..+.+.+||
T Consensus 9 ~~l~I~iIGa-GrVG~~La~aL~~ag~-----~v~~-v~--srs~~sa~~a~~~~--------~~~~~-~~~~~~~~~aD 70 (127)
T PF10727_consen 9 ARLKIGIIGA-GRVGTALARALARAGH-----EVVG-VY--SRSPASAERAAAFI--------GAGAI-LDLEEILRDAD 70 (127)
T ss_dssp ---EEEEECT-SCCCCHHHHHHHHTTS-----EEEE-ES--SCHH-HHHHHHC----------TT------TTGGGCC-S
T ss_pred CccEEEEECC-CHHHHHHHHHHHHCCC-----eEEE-EE--eCCccccccccccc--------ccccc-cccccccccCC
Confidence 3579999995 9999999999998775 2322 22 33433333221111 12222 23557889999
Q ss_pred EEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhh--cCCCeEEEEeCC---CchhHHHH
Q 019713 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAV--ASRNVKVIVVGN---PCNTNALI 231 (337)
Q Consensus 175 vVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~--a~p~aivIvvtN---Pvd~~t~i 231 (337)
+++++... ..+.++++.|.++ -.|+ .+++-+- +++++..+
T Consensus 71 lv~iavpD----------------daI~~va~~La~~~~~~~g-~iVvHtSGa~~~~vL~p~ 115 (127)
T PF10727_consen 71 LVFIAVPD----------------DAIAEVAEQLAQYGAWRPG-QIVVHTSGALGSDVLAPA 115 (127)
T ss_dssp EEEE-S-C----------------CHHHHHHHHHHCC--S-TT--EEEES-SS--GGGGHHH
T ss_pred EEEEEech----------------HHHHHHHHHHHHhccCCCC-cEEEECCCCChHHhhhhH
Confidence 99998521 2356677777764 2344 4555543 45666554
No 92
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=97.24 E-value=0.0024 Score=53.11 Aligned_cols=95 Identities=23% Similarity=0.271 Sum_probs=54.2
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhc--cCCcccEEEecCcccccCCCcE
Q 019713 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSL--FPLLREVKIGINPYELFEDAEW 175 (337)
Q Consensus 98 KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~--~~~~~~v~i~t~~~eal~dADv 175 (337)
||+||||+|.+|..++..|....-+. + +.+++.... .|.. +.... ......+.+...+.+.+.++|+
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e----~-~~~~~~~~~----~g~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv 69 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFE----L-VALVSSSRS----AGKP--LSEVFPHPKGFEDLSVEDADPEELSDVDV 69 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEE----E-EEEEESTTT----TTSB--HHHTTGGGTTTEEEBEEETSGHHHTTESE
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCcc----E-EEeeeeccc----cCCe--eehhccccccccceeEeecchhHhhcCCE
Confidence 79999999999999999998855432 2 122222210 1111 11111 0111244454456788999999
Q ss_pred EEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 019713 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (337)
Q Consensus 176 VIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvt 222 (337)
|+++.+ ...-+++.+.+.+ .+++||=.|
T Consensus 70 vf~a~~----------------~~~~~~~~~~~~~---~g~~ViD~s 97 (121)
T PF01118_consen 70 VFLALP----------------HGASKELAPKLLK---AGIKVIDLS 97 (121)
T ss_dssp EEE-SC----------------HHHHHHHHHHHHH---TTSEEEESS
T ss_pred EEecCc----------------hhHHHHHHHHHhh---CCcEEEeCC
Confidence 999853 2445666666643 455555444
No 93
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=97.24 E-value=0.0037 Score=63.33 Aligned_cols=111 Identities=13% Similarity=0.105 Sum_probs=67.7
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccc--hhhHHHhHHHhHhhhccCCcccEEEec-C-cccc
Q 019713 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSER--SLQALEGVAMELEDSLFPLLREVKIGI-N-PYEL 169 (337)
Q Consensus 94 ~~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~--~~~~l~g~a~DL~d~~~~~~~~v~i~t-~-~~ea 169 (337)
++.|||.|+||+|+||++++..|...+. .|.. +|... ..+.+. .+. . ..++.... | ....
T Consensus 118 ~~~mkILVTGatGFIGs~Lv~~Ll~~G~-----~V~~--ldr~~~~~~~~~~----~~~----~-~~~~~~~~~Di~~~~ 181 (436)
T PLN02166 118 RKRLRIVVTGGAGFVGSHLVDKLIGRGD-----EVIV--IDNFFTGRKENLV----HLF----G-NPRFELIRHDVVEPI 181 (436)
T ss_pred cCCCEEEEECCccHHHHHHHHHHHHCCC-----EEEE--EeCCCCccHhHhh----hhc----c-CCceEEEECcccccc
Confidence 4568999999999999999999998764 2433 22211 111111 111 0 01222211 1 2345
Q ss_pred cCCCcEEEEecccCC--CCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 170 FEDAEWALLIGAKPR--GPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 170 l~dADvVIitag~pr--k~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
+.++|+||-+|+... ....+..+.+..|+.....+.+.+++. . +++|+++.
T Consensus 182 ~~~~D~ViHlAa~~~~~~~~~~p~~~~~~Nv~gT~nLleaa~~~-g--~r~V~~SS 234 (436)
T PLN02166 182 LLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRV-G--ARFLLTST 234 (436)
T ss_pred ccCCCEEEECceeccchhhccCHHHHHHHHHHHHHHHHHHHHHh-C--CEEEEECc
Confidence 778999999886422 112244567789999889999988886 3 46777764
No 94
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=97.23 E-value=0.0011 Score=65.47 Aligned_cols=129 Identities=16% Similarity=0.201 Sum_probs=71.5
Q ss_pred CccceeeeeeeccchhhhhhccCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhh
Q 019713 73 DCYGVFCLTYDLKAEEETKSWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDS 152 (337)
Q Consensus 73 ~~~gv~~~~~~~~~~~~~~~~~~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~ 152 (337)
|.||.|.|.---+++. .+.+.+||.|+||+|+||++++..|...+. .|.. + ++..... +.+.
T Consensus 1 ~~~~~~~~~~~~~~~~---~~~~~~~IlVtGgtGfIG~~l~~~L~~~G~-----~V~~--v--~r~~~~~------~~~~ 62 (370)
T PLN02695 1 ESYGAYTLAELEREPY---WPSEKLRICITGAGGFIASHIARRLKAEGH-----YIIA--S--DWKKNEH------MSED 62 (370)
T ss_pred CCccccchhhcCCCCC---CCCCCCEEEEECCccHHHHHHHHHHHhCCC-----EEEE--E--Eeccccc------cccc
Confidence 4678776643222222 345668999999999999999999988764 2432 2 2211100 0000
Q ss_pred ccCCcccEEEe-----cCcccccCCCcEEEEecccCCCCCC---chhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 153 LFPLLREVKIG-----INPYELFEDAEWALLIGAKPRGPGM---ERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 153 ~~~~~~~v~i~-----t~~~eal~dADvVIitag~prk~g~---~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
. ....+... ......++++|+||.+++.....+. ........|......+.+.+++. ... .+|.+|.
T Consensus 63 ~--~~~~~~~~Dl~d~~~~~~~~~~~D~Vih~Aa~~~~~~~~~~~~~~~~~~N~~~t~nll~aa~~~-~vk-~~V~~SS 137 (370)
T PLN02695 63 M--FCHEFHLVDLRVMENCLKVTKGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEAARIN-GVK-RFFYASS 137 (370)
T ss_pred c--ccceEEECCCCCHHHHHHHHhCCCEEEEcccccCCccccccCchhhHHHHHHHHHHHHHHHHHh-CCC-EEEEeCc
Confidence 0 00011111 0112346789999988764311111 22334667888888888888775 333 5666654
No 95
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.23 E-value=0.0041 Score=57.38 Aligned_cols=72 Identities=15% Similarity=0.113 Sum_probs=43.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCc
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dAD 174 (337)
+.+||+|||+ |.+|.+++..|...+.... ..+. ..+ +.+.++++..+. . + .+..+.+..+.++++|
T Consensus 3 ~~~kI~iIG~-G~mg~ala~~l~~~~~~~~-~~i~--~~~-~~~~~~~~~~~~----~---~--~~~~~~~~~~~~~~~D 68 (245)
T PRK07634 3 KKHRILFIGA-GRMAEAIFSGLLKTSKEYI-EEII--VSN-RSNVEKLDQLQA----R---Y--NVSTTTDWKQHVTSVD 68 (245)
T ss_pred CCCeEEEECc-CHHHHHHHHHHHhCCCCCc-CeEE--EEC-CCCHHHHHHHHH----H---c--CcEEeCChHHHHhcCC
Confidence 4579999995 9999999999987653211 0122 222 123344443221 1 1 1334455567789999
Q ss_pred EEEEec
Q 019713 175 WALLIG 180 (337)
Q Consensus 175 vVIita 180 (337)
+||++.
T Consensus 69 iViiav 74 (245)
T PRK07634 69 TIVLAM 74 (245)
T ss_pred EEEEec
Confidence 999874
No 96
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=97.21 E-value=0.0016 Score=61.99 Aligned_cols=95 Identities=24% Similarity=0.322 Sum_probs=61.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcE
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADv 175 (337)
++||++||+ |+||.+++..|...+..... .|.+ .+++.++++. +.+.. +. . .+++..+...++|+
T Consensus 1 ~~~IgfIG~-G~Mg~Ai~~gl~~~g~~~~~-~I~v----~~~~~e~~~~----l~~~~-g~--~--~~~~~~~~~~~adv 65 (266)
T COG0345 1 MMKIGFIGA-GNMGEAILSGLLKSGALPPE-EIIV----TNRSEEKRAA----LAAEY-GV--V--TTTDNQEAVEEADV 65 (266)
T ss_pred CceEEEEcc-CHHHHHHHHHHHhcCCCCcc-eEEE----eCCCHHHHHH----HHHHc-CC--c--ccCcHHHHHhhCCE
Confidence 479999995 99999999999998854421 2433 4666666652 22211 21 2 24566688899999
Q ss_pred EEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 019713 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (337)
Q Consensus 176 VIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvt 222 (337)
||++. || +.+.++.+.++.. .++-.||-+.
T Consensus 66 v~Lav----KP------------q~~~~vl~~l~~~-~~~~lvISia 95 (266)
T COG0345 66 VFLAV----KP------------QDLEEVLSKLKPL-TKDKLVISIA 95 (266)
T ss_pred EEEEe----Ch------------HhHHHHHHHhhcc-cCCCEEEEEe
Confidence 99986 44 4566777777652 4554444443
No 97
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.19 E-value=0.0028 Score=59.40 Aligned_cols=96 Identities=22% Similarity=0.237 Sum_probs=57.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcE
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADv 175 (337)
|+||+|||+ |.+|..++..|...+... ..+.+ .+++.+.++.....+ .+.+..+..+.+.++|+
T Consensus 2 mm~I~iIG~-G~mG~~la~~l~~~g~~~--~~v~v----~~r~~~~~~~~~~~~---------g~~~~~~~~~~~~~adv 65 (267)
T PRK11880 2 MKKIGFIGG-GNMASAIIGGLLASGVPA--KDIIV----SDPSPEKRAALAEEY---------GVRAATDNQEAAQEADV 65 (267)
T ss_pred CCEEEEEec-hHHHHHHHHHHHhCCCCc--ceEEE----EcCCHHHHHHHHHhc---------CCeecCChHHHHhcCCE
Confidence 579999995 999999999998776411 12333 245555544321111 12333444566889999
Q ss_pred EEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCc
Q 019713 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC 225 (337)
Q Consensus 176 VIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPv 225 (337)
||++.. ...++++.+.+..+. +..||-++|-.
T Consensus 66 Vil~v~----------------~~~~~~v~~~l~~~~--~~~vvs~~~gi 97 (267)
T PRK11880 66 VVLAVK----------------PQVMEEVLSELKGQL--DKLVVSIAAGV 97 (267)
T ss_pred EEEEcC----------------HHHHHHHHHHHHhhc--CCEEEEecCCC
Confidence 998751 133555555555542 34666677654
No 98
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=97.18 E-value=0.0024 Score=60.60 Aligned_cols=65 Identities=20% Similarity=0.240 Sum_probs=41.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcEE
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADvV 176 (337)
|||+||| .|.||.+++..|...+. .|.. + |++++.++.. .+.. .+...+++.+++++||+|
T Consensus 1 m~I~IIG-~G~mG~sla~~L~~~g~-----~V~~--~--d~~~~~~~~a-~~~g--------~~~~~~~~~~~~~~aDlV 61 (279)
T PRK07417 1 MKIGIVG-LGLIGGSLGLDLRSLGH-----TVYG--V--SRRESTCERA-IERG--------LVDEASTDLSLLKDCDLV 61 (279)
T ss_pred CeEEEEe-ecHHHHHHHHHHHHCCC-----EEEE--E--ECCHHHHHHH-HHCC--------CcccccCCHhHhcCCCEE
Confidence 4899999 59999999999988764 2443 3 4444444321 1110 011122344678999999
Q ss_pred EEec
Q 019713 177 LLIG 180 (337)
Q Consensus 177 Iita 180 (337)
|++.
T Consensus 62 ilav 65 (279)
T PRK07417 62 ILAL 65 (279)
T ss_pred EEcC
Confidence 9985
No 99
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.15 E-value=0.005 Score=58.56 Aligned_cols=103 Identities=20% Similarity=0.246 Sum_probs=59.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcE
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADv 175 (337)
|+||+|||+ |.+|.+++..|...+.+.. ..+.+ ++.+ ..++++.. .... ..+.++.+..+.++++|+
T Consensus 1 m~~I~iIG~-G~mG~ala~~L~~~g~~~~-~~V~~--~~r~-~~~~~~~l----~~~~----~~~~~~~~~~e~~~~aDv 67 (277)
T PRK06928 1 MEKIGFIGY-GSMADMIATKLLETEVATP-EEIIL--YSSS-KNEHFNQL----YDKY----PTVELADNEAEIFTKCDH 67 (277)
T ss_pred CCEEEEECc-cHHHHHHHHHHHHCCCCCc-ccEEE--EeCC-cHHHHHHH----HHHc----CCeEEeCCHHHHHhhCCE
Confidence 468999995 9999999999988774321 12433 2221 12222221 1111 123344455567899999
Q ss_pred EEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchh
Q 019713 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNT 227 (337)
Q Consensus 176 VIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~ 227 (337)
||++.. .+.++++.+.+..+..++..||.+.|-++.
T Consensus 68 Vilavp----------------p~~~~~vl~~l~~~l~~~~~ivS~~aGi~~ 103 (277)
T PRK06928 68 SFICVP----------------PLAVLPLLKDCAPVLTPDRHVVSIAAGVSL 103 (277)
T ss_pred EEEecC----------------HHHHHHHHHHHHhhcCCCCEEEEECCCCCH
Confidence 998752 133455555555443455566667665433
No 100
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=97.12 E-value=0.0035 Score=63.13 Aligned_cols=112 Identities=15% Similarity=0.113 Sum_probs=62.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHh--------HhhhccC--CcccEEEecC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAME--------LEDSLFP--LLREVKIGIN 165 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~D--------L~d~~~~--~~~~v~i~t~ 165 (337)
++||+||| .|.||..+|..|+..|. .|.. + |+++++++..... +++.... -......++
T Consensus 3 ~~kI~VIG-lG~~G~~~A~~La~~G~-----~V~~--~--D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g~l~~~~- 71 (415)
T PRK11064 3 FETISVIG-LGYIGLPTAAAFASRQK-----QVIG--V--DINQHAVDTINRGEIHIVEPDLDMVVKTAVEGGYLRATT- 71 (415)
T ss_pred ccEEEEEC-cchhhHHHHHHHHhCCC-----EEEE--E--eCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcCceeeec-
Confidence 47999999 59999999999998874 2443 3 4455555532111 1100000 001233332
Q ss_pred cccccCCCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC-Cchh
Q 019713 166 PYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN-PCNT 227 (337)
Q Consensus 166 ~~eal~dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtN-Pvd~ 227 (337)
+.++||+||++...|.++.. . .+...+.+..+.|.++..++.+||+-|- |..+
T Consensus 72 ---~~~~aDvvii~vptp~~~~~-~-----~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgt 125 (415)
T PRK11064 72 ---TPEPADAFLIAVPTPFKGDH-E-----PDLTYVEAAAKSIAPVLKKGDLVILESTSPVGA 125 (415)
T ss_pred ---ccccCCEEEEEcCCCCCCCC-C-----cChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCH
Confidence 24589999999877643221 1 1234445555666666566666655553 5443
No 101
>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]
Probab=97.12 E-value=0.0041 Score=60.66 Aligned_cols=120 Identities=13% Similarity=0.045 Sum_probs=73.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcc----cEEEecCccccc
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLR----EVKIGINPYELF 170 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~----~v~i~t~~~eal 170 (337)
..++|+|+||+|+||++++..|+.+|+. |.-... .+.++++. ....+|+... ..+. ++.-...-.+++
T Consensus 5 ~~~~VcVTGAsGfIgswivk~LL~rGY~-----V~gtVR-~~~~~k~~-~~L~~l~~a~-~~l~l~~aDL~d~~sf~~ai 76 (327)
T KOG1502|consen 5 EGKKVCVTGASGFIGSWIVKLLLSRGYT-----VRGTVR-DPEDEKKT-EHLRKLEGAK-ERLKLFKADLLDEGSFDKAI 76 (327)
T ss_pred CCcEEEEeCCchHHHHHHHHHHHhCCCE-----EEEEEc-CcchhhhH-HHHHhcccCc-ccceEEeccccccchHHHHH
Confidence 4579999999999999999999999983 432211 12222222 2344455322 2111 111111234789
Q ss_pred CCCcEEEEecccCCCCCC-chhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCC
Q 019713 171 EDAEWALLIGAKPRGPGM-ERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (337)
Q Consensus 171 ~dADvVIitag~prk~g~-~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNP 224 (337)
++||.|+-+|....-... .-.+++.-.++-.+.+.+.+.+. +.++=+|+|.-
T Consensus 77 ~gcdgVfH~Asp~~~~~~~~e~~li~pav~Gt~nVL~ac~~~--~sVkrvV~TSS 129 (327)
T KOG1502|consen 77 DGCDGVFHTASPVDFDLEDPEKELIDPAVKGTKNVLEACKKT--KSVKRVVYTSS 129 (327)
T ss_pred hCCCEEEEeCccCCCCCCCcHHhhhhHHHHHHHHHHHHHhcc--CCcceEEEecc
Confidence 999999999864321112 23357788888888899999886 35555566653
No 102
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.12 E-value=0.006 Score=57.86 Aligned_cols=69 Identities=30% Similarity=0.304 Sum_probs=43.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchh-hHHHhHHHhHhhhccCCcccEEEecCcccccCCCcE
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSL-QALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~-~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADv 175 (337)
|||+||| +|.||.+++..|...+.... ..+.+ + +++. ++++..+.+ + .+.+..+..+.+++||+
T Consensus 4 mkI~~IG-~G~mG~aia~~l~~~g~~~~-~~v~v--~--~r~~~~~~~~l~~~-------~--g~~~~~~~~e~~~~aDv 68 (279)
T PRK07679 4 QNISFLG-AGSIAEAIIGGLLHANVVKG-EQITV--S--NRSNETRLQELHQK-------Y--GVKGTHNKKELLTDANI 68 (279)
T ss_pred CEEEEEC-ccHHHHHHHHHHHHCCCCCc-ceEEE--E--CCCCHHHHHHHHHh-------c--CceEeCCHHHHHhcCCE
Confidence 5999999 59999999999998874322 12332 2 3332 334332211 1 13344455567889999
Q ss_pred EEEec
Q 019713 176 ALLIG 180 (337)
Q Consensus 176 VIita 180 (337)
||++.
T Consensus 69 Vilav 73 (279)
T PRK07679 69 LFLAM 73 (279)
T ss_pred EEEEe
Confidence 99875
No 103
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=97.08 E-value=0.0047 Score=61.71 Aligned_cols=75 Identities=23% Similarity=0.268 Sum_probs=46.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEe--cCcccccCCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG--INPYELFEDA 173 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~--t~~~eal~dA 173 (337)
|+||.|||| |.||+.+|..|++.+. + .|.+ .|++.+++..... ..+.... ...+.+. ....+.+++.
T Consensus 1 m~~ilviGa-G~Vg~~va~~la~~~d-~---~V~i----AdRs~~~~~~i~~-~~~~~v~-~~~vD~~d~~al~~li~~~ 69 (389)
T COG1748 1 MMKILVIGA-GGVGSVVAHKLAQNGD-G---EVTI----ADRSKEKCARIAE-LIGGKVE-ALQVDAADVDALVALIKDF 69 (389)
T ss_pred CCcEEEECC-chhHHHHHHHHHhCCC-c---eEEE----EeCCHHHHHHHHh-hccccce-eEEecccChHHHHHHHhcC
Confidence 579999996 9999999999998886 2 2655 3566555543322 1110000 0011111 1234788999
Q ss_pred cEEEEecc
Q 019713 174 EWALLIGA 181 (337)
Q Consensus 174 DvVIitag 181 (337)
|+||.++.
T Consensus 70 d~VIn~~p 77 (389)
T COG1748 70 DLVINAAP 77 (389)
T ss_pred CEEEEeCC
Confidence 99999874
No 104
>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=97.03 E-value=0.0048 Score=59.98 Aligned_cols=93 Identities=8% Similarity=-0.096 Sum_probs=62.0
Q ss_pred ccEEEecC--cccccCCCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchh-HHHHHH-
Q 019713 158 REVKIGIN--PYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNT-NALICL- 233 (337)
Q Consensus 158 ~~v~i~t~--~~eal~dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~-~t~i~~- 233 (337)
.+++.+++ .++++++||+||.+. .++.++.+++...|.+++.|++++ +||.... ++.++.
T Consensus 63 ~~i~~~~~~~~~~a~~~aD~ViEav--------------~E~~~~K~~~f~~l~~~~~~~~il--aSntS~~~~~~la~~ 126 (314)
T PRK08269 63 ARIAVVARDGAADALADADLVFEAV--------------PEVLDAKREALRWLGRHVDADAII--ASTTSTFLVTDLQRH 126 (314)
T ss_pred hCeEeecCcchHHHhccCCEEEECC--------------cCCHHHHHHHHHHHHhhCCCCcEE--EEccccCCHHHHHhh
Confidence 35666654 568899999999985 456788888998899998888754 8887654 333332
Q ss_pred ----------HHCCCCCC-----CeE-EecCchhHHHHHHHHHHHhCCCc
Q 019713 234 ----------KNAPSIPA-----KNF-HALTRLDENRAKCQLALKAGVFY 267 (337)
Q Consensus 234 ----------k~s~~~p~-----kvI-G~gT~LDs~R~~~~lA~~lgv~~ 267 (337)
++. +.|. +++ |.+|.-++......+.+.+|..|
T Consensus 127 ~~~p~r~~g~Hf~-~Pp~~~~lvEVv~g~~t~~e~~~~~~~ll~~lGk~~ 175 (314)
T PRK08269 127 VAHPERFLNAHWL-NPAYLMPLVEVSPSDATDPAVVDRLAALLERIGKVP 175 (314)
T ss_pred cCCcccEEEEecC-CccccCceEEEeCCCCCCHHHHHHHHHHHHHcCCcE
Confidence 222 2221 355 45666666555566667788665
No 105
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=96.99 E-value=0.0035 Score=63.39 Aligned_cols=106 Identities=12% Similarity=0.163 Sum_probs=60.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCC----------cccEEEec
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL----------LREVKIGI 164 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~----------~~~v~i~t 164 (337)
++|||+||| .|.||..+|..|+.+ + .|.. + |+++++.+... ....+. ......+
T Consensus 5 ~~mkI~vIG-lGyvGlpmA~~la~~--~----~V~g--~--D~~~~~ve~l~----~G~~~~~e~~~~~l~~~g~l~~t- 68 (425)
T PRK15182 5 DEVKIAIIG-LGYVGLPLAVEFGKS--R----QVVG--F--DVNKKRILELK----NGVDVNLETTEEELREARYLKFT- 68 (425)
T ss_pred CCCeEEEEC-cCcchHHHHHHHhcC--C----EEEE--E--eCCHHHHHHHH----CcCCCCCCCCHHHHHhhCCeeEE-
Confidence 458999999 699999999998773 2 2433 3 44555544322 111110 0123444
Q ss_pred CcccccCCCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 019713 165 NPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (337)
Q Consensus 165 ~~~eal~dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvt 222 (337)
.+.+++++||++|++.+.|.+... .. +..-+....+.|.++..++..||+-|
T Consensus 69 ~~~~~~~~advvii~Vptp~~~~~-~~-----dl~~v~~a~~~i~~~l~~g~lVI~~S 120 (425)
T PRK15182 69 SEIEKIKECNFYIITVPTPINTYK-QP-----DLTPLIKASETVGTVLNRGDIVVYES 120 (425)
T ss_pred eCHHHHcCCCEEEEEcCCCCCCCC-Cc-----chHHHHHHHHHHHHhcCCCCEEEEec
Confidence 345689999999999887753211 11 12223333444555444555555544
No 106
>CHL00194 ycf39 Ycf39; Provisional
Probab=96.98 E-value=0.0047 Score=59.25 Aligned_cols=104 Identities=13% Similarity=0.065 Sum_probs=58.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEE---e--cCcccccC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI---G--INPYELFE 171 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i---~--t~~~eal~ 171 (337)
|||.|+||+|++|++++..|...|. .|.. + .++.+.... +.+.. .++.. . ....++++
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g~-----~V~~--l--~R~~~~~~~----l~~~~----v~~v~~Dl~d~~~l~~al~ 63 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEGY-----QVRC--L--VRNLRKASF----LKEWG----AELVYGDLSLPETLPPSFK 63 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCC-----eEEE--E--EcChHHhhh----HhhcC----CEEEECCCCCHHHHHHHHC
Confidence 5899999999999999999998774 2432 1 233222211 11100 01111 1 11246789
Q ss_pred CCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 019713 172 DAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (337)
Q Consensus 172 dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvt 222 (337)
++|+||.+++... ....+....|..-...+.+.+++. +-. .+|.+|
T Consensus 64 g~d~Vi~~~~~~~---~~~~~~~~~~~~~~~~l~~aa~~~-gvk-r~I~~S 109 (317)
T CHL00194 64 GVTAIIDASTSRP---SDLYNAKQIDWDGKLALIEAAKAA-KIK-RFIFFS 109 (317)
T ss_pred CCCEEEECCCCCC---CCccchhhhhHHHHHHHHHHHHHc-CCC-EEEEec
Confidence 9999998764321 111223445666666777777664 323 555555
No 107
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=96.97 E-value=0.0057 Score=58.78 Aligned_cols=69 Identities=23% Similarity=0.263 Sum_probs=42.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcE
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADv 175 (337)
.+||+||| +|.+|..++..|...+... .|.+ + |++++.++. +.+. .. ......+..+.++++|+
T Consensus 6 ~~~I~IIG-~G~mG~sla~~l~~~g~~~---~V~~--~--dr~~~~~~~-a~~~-----g~--~~~~~~~~~~~~~~aDv 69 (307)
T PRK07502 6 FDRVALIG-IGLIGSSLARAIRRLGLAG---EIVG--A--DRSAETRAR-AREL-----GL--GDRVTTSAAEAVKGADL 69 (307)
T ss_pred CcEEEEEe-eCHHHHHHHHHHHhcCCCc---EEEE--E--ECCHHHHHH-HHhC-----CC--CceecCCHHHHhcCCCE
Confidence 46999999 5999999999998877521 1333 3 444444332 1111 11 11222344567899999
Q ss_pred EEEec
Q 019713 176 ALLIG 180 (337)
Q Consensus 176 VIita 180 (337)
||++.
T Consensus 70 Viiav 74 (307)
T PRK07502 70 VILCV 74 (307)
T ss_pred EEECC
Confidence 99986
No 108
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=96.92 E-value=0.0053 Score=59.15 Aligned_cols=79 Identities=13% Similarity=0.095 Sum_probs=49.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcE
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADv 175 (337)
.|||+||| +|.+|.+++..|...+. +|.+ ++.+ .. .+..++++++|+
T Consensus 4 ~m~I~iiG-~G~~G~~lA~~l~~~G~-----~V~~--~~r~--~~-----------------------~~~~~~~~~adv 50 (308)
T PRK14619 4 PKTIAILG-AGAWGSTLAGLASANGH-----RVRV--WSRR--SG-----------------------LSLAAVLADADV 50 (308)
T ss_pred CCEEEEEC-ccHHHHHHHHHHHHCCC-----EEEE--EeCC--CC-----------------------CCHHHHHhcCCE
Confidence 46999999 59999999999998875 2544 3332 11 123356678898
Q ss_pred EEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhh-cCCCeEEEEeCC
Q 019713 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAV-ASRNVKVIVVGN 223 (337)
Q Consensus 176 VIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~-a~p~aivIvvtN 223 (337)
||++.. ...++++.+.+..+ ..++++|+..++
T Consensus 51 vi~~vp----------------~~~~~~v~~~l~~~~~~~~~ivi~~s~ 83 (308)
T PRK14619 51 IVSAVS----------------MKGVRPVAEQVQALNLPPETIIVTATK 83 (308)
T ss_pred EEEECC----------------hHHHHHHHHHHHHhcCCCCcEEEEeCC
Confidence 888741 12344445555432 245666777666
No 109
>PLN02206 UDP-glucuronate decarboxylase
Probab=96.86 E-value=0.0088 Score=60.75 Aligned_cols=112 Identities=11% Similarity=0.093 Sum_probs=65.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEe-cC-cccccCC
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN-PYELFED 172 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-t~-~~eal~d 172 (337)
+.+||.|+||+|+||++++..|...+. .|.. +|.... .. .....+. .. . .++... .| ....+.+
T Consensus 118 ~~~kILVTGatGfIGs~Lv~~Ll~~G~-----~V~~--ld~~~~-~~-~~~~~~~--~~-~--~~~~~i~~D~~~~~l~~ 183 (442)
T PLN02206 118 KGLRVVVTGGAGFVGSHLVDRLMARGD-----SVIV--VDNFFT-GR-KENVMHH--FS-N--PNFELIRHDVVEPILLE 183 (442)
T ss_pred CCCEEEEECcccHHHHHHHHHHHHCcC-----EEEE--EeCCCc-cc-hhhhhhh--cc-C--CceEEEECCccChhhcC
Confidence 457999999999999999999998764 2432 221110 01 1010100 00 0 112221 12 2245678
Q ss_pred CcEEEEecccCC--CCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 173 AEWALLIGAKPR--GPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 173 ADvVIitag~pr--k~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
+|+||-+|+... ....+..+.+..|+.....+.+.+++. . +++|+++.
T Consensus 184 ~D~ViHlAa~~~~~~~~~~p~~~~~~Nv~gt~nLleaa~~~-g--~r~V~~SS 233 (442)
T PLN02206 184 VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRV-G--ARFLLTST 233 (442)
T ss_pred CCEEEEeeeecchhhhhcCHHHHHHHHHHHHHHHHHHHHHh-C--CEEEEECC
Confidence 999998886432 111233456788988888888888775 2 46776664
No 110
>PLN00198 anthocyanidin reductase; Provisional
Probab=96.84 E-value=0.0067 Score=58.44 Aligned_cols=115 Identities=15% Similarity=0.144 Sum_probs=63.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEE-ec---C---ccc
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GI---N---PYE 168 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~t---~---~~e 168 (337)
++||.|+||+|++|++++..|+..+. .|.+...+.+ ....+. ++.... .. .++.+ .. + ..+
T Consensus 9 ~~~vlItG~~GfIG~~l~~~L~~~g~-----~V~~~~r~~~-~~~~~~----~~~~~~-~~-~~~~~~~~Dl~d~~~~~~ 76 (338)
T PLN00198 9 KKTACVIGGTGFLASLLIKLLLQKGY-----AVNTTVRDPE-NQKKIA----HLRALQ-EL-GDLKIFGADLTDEESFEA 76 (338)
T ss_pred CCeEEEECCchHHHHHHHHHHHHCCC-----EEEEEECCCC-CHHHHH----HHHhcC-CC-CceEEEEcCCCChHHHHH
Confidence 46899999999999999999998764 2433222211 111110 111100 00 11221 11 1 134
Q ss_pred ccCCCcEEEEecccCCCCCCc-hhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 169 LFEDAEWALLIGAKPRGPGME-RAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 169 al~dADvVIitag~prk~g~~-R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
.++++|+||.+|+.......+ ..++...|+.-...+.+.+.+. ..-..||++|.
T Consensus 77 ~~~~~d~vih~A~~~~~~~~~~~~~~~~~nv~g~~~ll~a~~~~-~~~~~~v~~SS 131 (338)
T PLN00198 77 PIAGCDLVFHVATPVNFASEDPENDMIKPAIQGVHNVLKACAKA-KSVKRVILTSS 131 (338)
T ss_pred HHhcCCEEEEeCCCCccCCCChHHHHHHHHHHHHHHHHHHHHhc-CCccEEEEeec
Confidence 577899999888642211112 2245677888888888888775 22225555553
No 111
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=96.82 E-value=0.019 Score=55.87 Aligned_cols=116 Identities=14% Similarity=0.066 Sum_probs=64.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccc--hhhHHHhHHHhHhhhccCCcccEEEec-C--c---
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSER--SLQALEGVAMELEDSLFPLLREVKIGI-N--P--- 166 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~--~~~~l~g~a~DL~d~~~~~~~~v~i~t-~--~--- 166 (337)
+++||.|+||+|++|++++..|...+. .|.. +|... ....+......+.+. . ..++.... | +
T Consensus 14 ~~~~vlVtGatGfiG~~lv~~L~~~g~-----~V~~--~d~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~Di~d~~~ 83 (348)
T PRK15181 14 APKRWLITGVAGFIGSGLLEELLFLNQ-----TVIG--LDNFSTGYQHNLDDVRTSVSEE--Q-WSRFIFIQGDIRKFTD 83 (348)
T ss_pred cCCEEEEECCccHHHHHHHHHHHHCCC-----EEEE--EeCCCCcchhhhhhhhhccccc--c-CCceEEEEccCCCHHH
Confidence 347999999999999999999998764 2432 22110 111111100000000 0 01122111 1 1
Q ss_pred -ccccCCCcEEEEecccCCCC--CCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 019713 167 -YELFEDAEWALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (337)
Q Consensus 167 -~eal~dADvVIitag~prk~--g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvt 222 (337)
.+.++++|+||-+|+.+..+ .....+....|+.-...+.+.+++. .-. .+|.+|
T Consensus 84 l~~~~~~~d~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~-~~~-~~v~~S 140 (348)
T PRK15181 84 CQKACKNVDYVLHQAALGSVPRSLKDPIATNSANIDGFLNMLTAARDA-HVS-SFTYAA 140 (348)
T ss_pred HHHHhhCCCEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHc-CCC-eEEEee
Confidence 23468899999988754322 1233456778888888888888875 222 556555
No 112
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=96.80 E-value=0.0053 Score=53.51 Aligned_cols=91 Identities=19% Similarity=0.172 Sum_probs=58.8
Q ss_pred EEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEec-------CcccccC
Q 019713 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI-------NPYELFE 171 (337)
Q Consensus 99 I~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t-------~~~eal~ 171 (337)
|.|+||+|++|..++..|...+. .|... -+++++++. . + ++++.. .-.++++
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~-----~V~~~----~R~~~~~~~--------~-~---~~~~~~~d~~d~~~~~~al~ 59 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGH-----EVTAL----VRSPSKAED--------S-P---GVEIIQGDLFDPDSVKAALK 59 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTS-----EEEEE----ESSGGGHHH--------C-T---TEEEEESCTTCHHHHHHHHT
T ss_pred eEEECCCChHHHHHHHHHHHCCC-----EEEEE----ecCchhccc--------c-c---ccccceeeehhhhhhhhhhh
Confidence 78999999999999999999883 24432 234444332 1 1 122111 1246788
Q ss_pred CCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 172 DAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 172 dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
++|.||.+.|.+.+ .....+.+.+.+++. +.. +++++|.
T Consensus 60 ~~d~vi~~~~~~~~-----------~~~~~~~~~~a~~~~-~~~-~~v~~s~ 98 (183)
T PF13460_consen 60 GADAVIHAAGPPPK-----------DVDAAKNIIEAAKKA-GVK-RVVYLSS 98 (183)
T ss_dssp TSSEEEECCHSTTT-----------HHHHHHHHHHHHHHT-TSS-EEEEEEE
T ss_pred hcchhhhhhhhhcc-----------ccccccccccccccc-ccc-cceeeec
Confidence 99999999875543 156778888888875 333 5566553
No 113
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=96.75 E-value=0.011 Score=56.05 Aligned_cols=115 Identities=16% Similarity=0.060 Sum_probs=62.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEE-----Ee--cCccc
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-----IG--INPYE 168 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~-----i~--t~~~e 168 (337)
.+||.|+||+|+||++++..|+..|. .|.....+.+ ...... .+.... ....++. +. ....+
T Consensus 4 ~~~ilVtGatGfIG~~l~~~L~~~g~-----~V~~~~r~~~-~~~~~~----~~~~~~-~~~~~~~~~~~Dl~~~~~~~~ 72 (322)
T PLN02662 4 GKVVCVTGASGYIASWLVKLLLQRGY-----TVKATVRDPN-DPKKTE----HLLALD-GAKERLHLFKANLLEEGSFDS 72 (322)
T ss_pred CCEEEEECChHHHHHHHHHHHHHCCC-----EEEEEEcCCC-chhhHH----HHHhcc-CCCCceEEEeccccCcchHHH
Confidence 36899999999999999999998775 2433222211 111111 111100 0001111 11 11235
Q ss_pred ccCCCcEEEEecccCCCC-CCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 019713 169 LFEDAEWALLIGAKPRGP-GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (337)
Q Consensus 169 al~dADvVIitag~prk~-g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvt 222 (337)
.++++|+||.+++..... .....+.+..|+.-...+.+.+.+..... .||++|
T Consensus 73 ~~~~~d~Vih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~-~~v~~S 126 (322)
T PLN02662 73 VVDGCEGVFHTASPFYHDVTDPQAELIDPAVKGTLNVLRSCAKVPSVK-RVVVTS 126 (322)
T ss_pred HHcCCCEEEEeCCcccCCCCChHHHHHHHHHHHHHHHHHHHHhCCCCC-EEEEcc
Confidence 578999999888643211 11223566778888888888777641112 455554
No 114
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=96.72 E-value=0.0077 Score=54.41 Aligned_cols=102 Identities=16% Similarity=0.164 Sum_probs=59.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHH---hHHHhHhhhccCCcccEEEecCcccccCCC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALE---GVAMELEDSLFPLLREVKIGINPYELFEDA 173 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~---g~a~DL~d~~~~~~~~v~i~t~~~eal~dA 173 (337)
|||+||||+|.+|+.++.....+|.- ...+ -++..++. ++.. .+. .+---+...++++|-
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGHe----VTAi-----vRn~~K~~~~~~~~i--~q~------Difd~~~~a~~l~g~ 63 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGHE----VTAI-----VRNASKLAARQGVTI--LQK------DIFDLTSLASDLAGH 63 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCCe----eEEE-----EeChHhcccccccee--ecc------cccChhhhHhhhcCC
Confidence 69999999999999999999998862 2333 24545542 2211 111 110001224789999
Q ss_pred cEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 174 DvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
|+||.+-|.+. ++.+ ..-.+-...+...++.. -..+++||+-
T Consensus 64 DaVIsA~~~~~-~~~~-----~~~~k~~~~li~~l~~a--gv~RllVVGG 105 (211)
T COG2910 64 DAVISAFGAGA-SDND-----ELHSKSIEALIEALKGA--GVPRLLVVGG 105 (211)
T ss_pred ceEEEeccCCC-CChh-----HHHHHHHHHHHHHHhhc--CCeeEEEEcC
Confidence 99998765432 2211 11122244555556653 3457888874
No 115
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=96.71 E-value=0.022 Score=54.58 Aligned_cols=68 Identities=16% Similarity=0.371 Sum_probs=44.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHH-hHHHhHhhhccCCcccEEEecC-cccccCCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALE-GVAMELEDSLFPLLREVKIGIN-PYELFEDA 173 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~-g~a~DL~d~~~~~~~~v~i~t~-~~eal~dA 173 (337)
++||+|+| .|.||.+++..|...+.. +.+ ++.|.+...++ +..+++.|. .+.+ ..++.++|
T Consensus 3 ~~~v~IvG-~GliG~s~a~~l~~~g~~-----v~i--~g~d~~~~~~~~a~~lgv~d~---------~~~~~~~~~~~~a 65 (279)
T COG0287 3 SMKVGIVG-LGLMGGSLARALKEAGLV-----VRI--IGRDRSAATLKAALELGVIDE---------LTVAGLAEAAAEA 65 (279)
T ss_pred CcEEEEEC-CchHHHHHHHHHHHcCCe-----EEE--EeecCcHHHHHHHhhcCcccc---------cccchhhhhcccC
Confidence 57999999 599999999999998874 433 34454433332 221222221 1122 26788999
Q ss_pred cEEEEec
Q 019713 174 EWALLIG 180 (337)
Q Consensus 174 DvVIita 180 (337)
|+||++.
T Consensus 66 D~Vivav 72 (279)
T COG0287 66 DLVIVAV 72 (279)
T ss_pred CEEEEec
Confidence 9999975
No 116
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=96.71 E-value=0.017 Score=55.70 Aligned_cols=108 Identities=18% Similarity=0.192 Sum_probs=57.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCC-cccEEEecCcccccCCC
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL-LREVKIGINPYELFEDA 173 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~-~~~v~i~t~~~eal~dA 173 (337)
+.|||+|||+ |.||..++..|...+. .|.+.. .+. .+........+....... ...+.+.+ +.++...+
T Consensus 4 ~~m~I~IiG~-GaiG~~lA~~L~~~g~-----~V~~~~--r~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 73 (313)
T PRK06249 4 ETPRIGIIGT-GAIGGFYGAMLARAGF-----DVHFLL--RSD-YEAVRENGLQVDSVHGDFHLPPVQAYR-SAEDMPPC 73 (313)
T ss_pred cCcEEEEECC-CHHHHHHHHHHHHCCC-----eEEEEE--eCC-HHHHHhCCeEEEeCCCCeeecCceEEc-chhhcCCC
Confidence 3479999995 9999999999988663 355532 221 111111001111000000 01122322 33467889
Q ss_pred cEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhH
Q 019713 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTN 228 (337)
Q Consensus 174 DvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~ 228 (337)
|+||++.-.. . ..+..+.+.....+++.|+...|-.+..
T Consensus 74 D~vilavK~~----~------------~~~~~~~l~~~~~~~~~iv~lqNG~~~~ 112 (313)
T PRK06249 74 DWVLVGLKTT----A------------NALLAPLIPQVAAPDAKVLLLQNGLGVE 112 (313)
T ss_pred CEEEEEecCC----C------------hHhHHHHHhhhcCCCCEEEEecCCCCcH
Confidence 9999985211 1 1233444444445777888888876543
No 117
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=96.70 E-value=0.0091 Score=50.03 Aligned_cols=74 Identities=16% Similarity=0.130 Sum_probs=43.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcEE
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADvV 176 (337)
|||+|+|++|.||..++..+....- ..|.-. +++..+...| .|+.+...-....+.++.+..+.+..+|+|
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~------~~lv~~-v~~~~~~~~g--~d~g~~~~~~~~~~~v~~~l~~~~~~~DVv 71 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPG------FELVGA-VDRKPSAKVG--KDVGELAGIGPLGVPVTDDLEELLEEADVV 71 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTT------EEEEEE-EETTTSTTTT--SBCHHHCTSST-SSBEBS-HHHHTTH-SEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCC------cEEEEE-EecCCccccc--chhhhhhCcCCcccccchhHHHhcccCCEE
Confidence 5999999779999999999988443 222211 3443322222 344433211123455666677888889998
Q ss_pred EEe
Q 019713 177 LLI 179 (337)
Q Consensus 177 Iit 179 (337)
|-.
T Consensus 72 IDf 74 (124)
T PF01113_consen 72 IDF 74 (124)
T ss_dssp EEE
T ss_pred EEc
Confidence 854
No 118
>PLN02778 3,5-epimerase/4-reductase
Probab=96.70 E-value=0.018 Score=55.14 Aligned_cols=88 Identities=7% Similarity=0.035 Sum_probs=55.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcE
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADv 175 (337)
.|||.|+||+|++|++++..|...+. .+... ..+. ...+....|+.+ .+.|+
T Consensus 9 ~~kiLVtG~tGfiG~~l~~~L~~~g~-----~V~~~--~~~~--~~~~~v~~~l~~-------------------~~~D~ 60 (298)
T PLN02778 9 TLKFLIYGKTGWIGGLLGKLCQEQGI-----DFHYG--SGRL--ENRASLEADIDA-------------------VKPTH 60 (298)
T ss_pred CCeEEEECCCCHHHHHHHHHHHhCCC-----EEEEe--cCcc--CCHHHHHHHHHh-------------------cCCCE
Confidence 47999999999999999999988764 24321 1111 111111111211 15899
Q ss_pred EEEecccCCCCC-----CchhhhHHhhHHHHHHHHHHHHhh
Q 019713 176 ALLIGAKPRGPG-----MERAGLLDINGQIFAEQGKALNAV 211 (337)
Q Consensus 176 VIitag~prk~g-----~~R~dll~~N~~I~~~i~~~I~~~ 211 (337)
||-+|+....+. ....+.+..|......+.+..++.
T Consensus 61 ViH~Aa~~~~~~~~~~~~~p~~~~~~Nv~gt~~ll~aa~~~ 101 (298)
T PLN02778 61 VFNAAGVTGRPNVDWCESHKVETIRANVVGTLTLADVCRER 101 (298)
T ss_pred EEECCcccCCCCchhhhhCHHHHHHHHHHHHHHHHHHHHHh
Confidence 998887543222 123456778888888888888775
No 119
>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. 3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process
Probab=96.66 E-value=0.0042 Score=59.22 Aligned_cols=113 Identities=16% Similarity=0.165 Sum_probs=66.5
Q ss_pred EEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhcc--CCcccEEEecCcccccCCCcEEEE
Q 019713 101 VSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLF--PLLREVKIGINPYELFEDAEWALL 178 (337)
Q Consensus 101 IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~--~~~~~v~i~t~~~eal~dADvVIi 178 (337)
|+||+|++|++++..|+..+-. ..++.+|.......+. ++.+... ....+++-..+-.++++++|+||-
T Consensus 2 VTGgsGflG~~iv~~Ll~~g~~-----~~Vr~~d~~~~~~~~~----~~~~~~~~~~~~~Di~d~~~l~~a~~g~d~V~H 72 (280)
T PF01073_consen 2 VTGGSGFLGSHIVRQLLERGYI-----YEVRVLDRSPPPKFLK----DLQKSGVKEYIQGDITDPESLEEALEGVDVVFH 72 (280)
T ss_pred EEcCCcHHHHHHHHHHHHCCCc-----eEEEEcccccccccch----hhhcccceeEEEeccccHHHHHHHhcCCceEEE
Confidence 8999999999999999988742 2233444433222211 1111110 001122222234578999999999
Q ss_pred ecccCCCCC-CchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCc
Q 019713 179 IGAKPRGPG-MERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC 225 (337)
Q Consensus 179 tag~prk~g-~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPv 225 (337)
+|+.-.-.+ ..+..+...|+.=-+.+.+...+. +++-+|+|.-+
T Consensus 73 ~Aa~~~~~~~~~~~~~~~vNV~GT~nvl~aa~~~---~VkrlVytSS~ 117 (280)
T PF01073_consen 73 TAAPVPPWGDYPPEEYYKVNVDGTRNVLEAARKA---GVKRLVYTSSI 117 (280)
T ss_pred eCccccccCcccHHHHHHHHHHHHHHHHHHHHHc---CCCEEEEEcCc
Confidence 886432223 345667888988888888888774 34444444333
No 120
>PRK14982 acyl-ACP reductase; Provisional
Probab=96.66 E-value=0.0083 Score=59.03 Aligned_cols=98 Identities=23% Similarity=0.330 Sum_probs=61.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHc-CCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCc
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAG-EVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~-~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dAD 174 (337)
.++|.|+||+|.||+.++..|+.. +.. .+. + .+++.+++...+.++.+.. + .+..+++.++|
T Consensus 155 ~k~VLVtGAtG~IGs~lar~L~~~~gv~----~li--l--v~R~~~rl~~La~el~~~~------i---~~l~~~l~~aD 217 (340)
T PRK14982 155 KATVAVVGATGDIGSAVCRWLDAKTGVA----ELL--L--VARQQERLQELQAELGGGK------I---LSLEEALPEAD 217 (340)
T ss_pred CCEEEEEccChHHHHHHHHHHHhhCCCC----EEE--E--EcCCHHHHHHHHHHhcccc------H---HhHHHHHccCC
Confidence 468999998899999999999753 331 133 3 3455666665554443211 1 12347899999
Q ss_pred EEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHH
Q 019713 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNA 229 (337)
Q Consensus 175 vVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t 229 (337)
+|+.+++.|...-.+..++ .+..++|=++-|-|+-.
T Consensus 218 iVv~~ts~~~~~~I~~~~l-------------------~~~~~viDiAvPRDVd~ 253 (340)
T PRK14982 218 IVVWVASMPKGVEIDPETL-------------------KKPCLMIDGGYPKNLDT 253 (340)
T ss_pred EEEECCcCCcCCcCCHHHh-------------------CCCeEEEEecCCCCCCc
Confidence 9999887764211111111 25578888888877654
No 121
>PLN02427 UDP-apiose/xylose synthase
Probab=96.65 E-value=0.0044 Score=61.07 Aligned_cols=116 Identities=16% Similarity=0.109 Sum_probs=61.6
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEec-------Cc
Q 019713 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI-------NP 166 (337)
Q Consensus 94 ~~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t-------~~ 166 (337)
.++|||.|+||+|+||++++..|+..+-. .|.. + +++.++.... .+.. ......++++.. ..
T Consensus 12 ~~~~~VlVTGgtGfIGs~lv~~L~~~~g~----~V~~--l--~r~~~~~~~l-~~~~--~~~~~~~~~~~~~Dl~d~~~l 80 (386)
T PLN02427 12 IKPLTICMIGAGGFIGSHLCEKLMTETPH----KVLA--L--DVYNDKIKHL-LEPD--TVPWSGRIQFHRINIKHDSRL 80 (386)
T ss_pred ccCcEEEEECCcchHHHHHHHHHHhcCCC----EEEE--E--ecCchhhhhh-hccc--cccCCCCeEEEEcCCCChHHH
Confidence 35679999999999999999999886311 2332 2 2222222211 0000 000111222211 11
Q ss_pred ccccCCCcEEEEecccCCCCC--CchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 167 YELFEDAEWALLIGAKPRGPG--MERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 167 ~eal~dADvVIitag~prk~g--~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
.++++++|+||-+|+...... ....+.+..|+.-...+.+..++. . .++|.+|.
T Consensus 81 ~~~~~~~d~ViHlAa~~~~~~~~~~~~~~~~~n~~gt~~ll~aa~~~-~--~r~v~~SS 136 (386)
T PLN02427 81 EGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSEN-N--KRLIHFST 136 (386)
T ss_pred HHHhhcCCEEEEcccccChhhhhhChHHHHHHHHHHHHHHHHHHHhc-C--CEEEEEee
Confidence 356778999999887532111 122344556665555666666554 3 36677664
No 122
>PLN02650 dihydroflavonol-4-reductase
Probab=96.64 E-value=0.012 Score=57.06 Aligned_cols=115 Identities=10% Similarity=0.119 Sum_probs=63.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEE-----Eec--Cccc
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-----IGI--NPYE 168 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~-----i~t--~~~e 168 (337)
.++|.|+||+|+||++++..|+..+. .|.+.. . +.+.+.... ++.... ....++. ++. ...+
T Consensus 5 ~k~iLVTGatGfIGs~l~~~L~~~G~-----~V~~~~--r--~~~~~~~~~-~~~~~~-~~~~~~~~v~~Dl~d~~~~~~ 73 (351)
T PLN02650 5 KETVCVTGASGFIGSWLVMRLLERGY-----TVRATV--R--DPANVKKVK-HLLDLP-GATTRLTLWKADLAVEGSFDD 73 (351)
T ss_pred CCEEEEeCCcHHHHHHHHHHHHHCCC-----EEEEEE--c--CcchhHHHH-HHHhcc-CCCCceEEEEecCCChhhHHH
Confidence 45899999999999999999998764 243321 1 222222111 111100 0000111 111 1235
Q ss_pred ccCCCcEEEEecccCCCCCCc-hhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 019713 169 LFEDAEWALLIGAKPRGPGME-RAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (337)
Q Consensus 169 al~dADvVIitag~prk~g~~-R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvt 222 (337)
.++++|+||.+++.......+ ..+.+..|+.-...+.+.+.+. ..-.+||++|
T Consensus 74 ~~~~~d~ViH~A~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~-~~~~r~v~~S 127 (351)
T PLN02650 74 AIRGCTGVFHVATPMDFESKDPENEVIKPTVNGMLSIMKACAKA-KTVRRIVFTS 127 (351)
T ss_pred HHhCCCEEEEeCCCCCCCCCCchhhhhhHHHHHHHHHHHHHHhc-CCceEEEEec
Confidence 577899999887642211111 2345677888888888887775 2223566665
No 123
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=96.60 E-value=0.0073 Score=58.54 Aligned_cols=112 Identities=21% Similarity=0.201 Sum_probs=68.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcEE
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADvV 176 (337)
|||+|+|| |.||+-++..|...+ . .+.+.. .++..+++...-+.+.+...... .......+.+....+|+|
T Consensus 1 mkI~IlGa-GAvG~l~g~~L~~~g-~----~V~~~~--R~~~~~~l~~~GL~i~~~~~~~~-~~~~~~~~~~~~~~~Dlv 71 (307)
T COG1893 1 MKILILGA-GAIGSLLGARLAKAG-H----DVTLLV--RSRRLEALKKKGLRIEDEGGNFT-TPVVAATDAEALGPADLV 71 (307)
T ss_pred CeEEEECC-cHHHHHHHHHHHhCC-C----eEEEEe--cHHHHHHHHhCCeEEecCCCccc-cccccccChhhcCCCCEE
Confidence 69999995 999999999999988 2 144422 22222333322333333321011 122334556778899999
Q ss_pred EEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHHHHHHH
Q 019713 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLK 234 (337)
Q Consensus 177 Iitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t~i~~k 234 (337)
|++. |.. -..+..+.|..+..++++|+..=|=....- .+.+
T Consensus 72 iv~v----Ka~------------q~~~al~~l~~~~~~~t~vl~lqNG~g~~e-~l~~ 112 (307)
T COG1893 72 IVTV----KAY------------QLEEALPSLAPLLGPNTVVLFLQNGLGHEE-ELRK 112 (307)
T ss_pred EEEe----ccc------------cHHHHHHHhhhcCCCCcEEEEEeCCCcHHH-HHHH
Confidence 9985 211 135566667777778888999989876665 3444
No 124
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=96.60 E-value=0.0073 Score=57.49 Aligned_cols=63 Identities=10% Similarity=0.134 Sum_probs=42.2
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcEEE
Q 019713 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWAL 177 (337)
Q Consensus 98 KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADvVI 177 (337)
||+||| .|.||..++..|+..+. .|.+ + |++.++++.. .+.. ....++..+++++||+||
T Consensus 1 ~IgvIG-~G~mG~~iA~~l~~~G~-----~V~~--~--dr~~~~~~~~----~~~g------~~~~~~~~~~~~~aDivi 60 (291)
T TIGR01505 1 KVGFIG-LGIMGSPMSINLAKAGY-----QLHV--T--TIGPEVADEL----LAAG------AVTAETARQVTEQADVIF 60 (291)
T ss_pred CEEEEE-ecHHHHHHHHHHHHCCC-----eEEE--E--cCCHHHHHHH----HHCC------CcccCCHHHHHhcCCEEE
Confidence 699999 59999999999998774 2543 3 4555554432 2111 112234567899999999
Q ss_pred Eec
Q 019713 178 LIG 180 (337)
Q Consensus 178 ita 180 (337)
++.
T Consensus 61 ~~v 63 (291)
T TIGR01505 61 TMV 63 (291)
T ss_pred Eec
Confidence 875
No 125
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=96.55 E-value=0.015 Score=54.79 Aligned_cols=62 Identities=15% Similarity=0.222 Sum_probs=40.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcEE
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADvV 176 (337)
|||+|||+ |.||.+++..|...+.+.+. .+.+ .+++.+++ .+....++.+.++++|+|
T Consensus 4 mkI~iIG~-G~mG~ai~~~l~~~~~~~~~-~i~~----~~~~~~~~----------------~~~~~~~~~~~~~~~D~V 61 (260)
T PTZ00431 4 IRVGFIGL-GKMGSALAYGIENSNIIGKE-NIYY----HTPSKKNT----------------PFVYLQSNEELAKTCDII 61 (260)
T ss_pred CEEEEECc-cHHHHHHHHHHHhCCCCCcc-eEEE----ECCChhcC----------------CeEEeCChHHHHHhCCEE
Confidence 68999995 99999999999988765421 2433 23332221 112233455677899999
Q ss_pred EEec
Q 019713 177 LLIG 180 (337)
Q Consensus 177 Iita 180 (337)
|++.
T Consensus 62 ilav 65 (260)
T PTZ00431 62 VLAV 65 (260)
T ss_pred EEEe
Confidence 8874
No 126
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=96.53 E-value=0.013 Score=60.11 Aligned_cols=100 Identities=19% Similarity=0.231 Sum_probs=60.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccC---C
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFE---D 172 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~---d 172 (337)
|.+|+||| .|.||..+|..|+..+. .|.+ + |++.++.+......... ...+....+..+.++ +
T Consensus 1 ~~~IgvIG-LG~MG~~lA~nL~~~G~-----~V~v--~--dr~~~~~~~l~~~~~~~----g~~i~~~~s~~e~v~~l~~ 66 (470)
T PTZ00142 1 MSDIGLIG-LAVMGQNLALNIASRGF-----KISV--Y--NRTYEKTEEFVKKAKEG----NTRVKGYHTLEELVNSLKK 66 (470)
T ss_pred CCEEEEEe-EhHHHHHHHHHHHHCCC-----eEEE--E--eCCHHHHHHHHHhhhhc----CCcceecCCHHHHHhcCCC
Confidence 45899999 59999999999999886 2554 3 45556655432211110 112333334334443 5
Q ss_pred CcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCC
Q 019713 173 AEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (337)
Q Consensus 173 ADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNP 224 (337)
+|+|+++.-. .+.++++.+.+..+..++.+||..+|-
T Consensus 67 ~d~Iil~v~~---------------~~~v~~vi~~l~~~L~~g~iIID~gn~ 103 (470)
T PTZ00142 67 PRKVILLIKA---------------GEAVDETIDNLLPLLEKGDIIIDGGNE 103 (470)
T ss_pred CCEEEEEeCC---------------hHHHHHHHHHHHhhCCCCCEEEECCCC
Confidence 8988776411 234455555555554677788888874
No 127
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=96.51 E-value=0.012 Score=56.73 Aligned_cols=112 Identities=10% Similarity=0.064 Sum_probs=64.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEE-----Eec--Cccc
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-----IGI--NPYE 168 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~-----i~t--~~~e 168 (337)
.++|.|+||+|.+|++++..|+..+-.. .|.+ ++ ++.........++.. .++. ++. ...+
T Consensus 4 ~k~vLVTGatG~IG~~l~~~L~~~g~~~---~V~~--~~--r~~~~~~~~~~~~~~------~~~~~v~~Dl~d~~~l~~ 70 (324)
T TIGR03589 4 NKSILITGGTGSFGKAFISRLLENYNPK---KIII--YS--RDELKQWEMQQKFPA------PCLRFFIGDVRDKERLTR 70 (324)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHhCCCc---EEEE--Ec--CChhHHHHHHHHhCC------CcEEEEEccCCCHHHHHH
Confidence 4689999999999999999998764111 1332 22 222222211111111 1111 111 1234
Q ss_pred ccCCCcEEEEecccCCCC--CCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 019713 169 LFEDAEWALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (337)
Q Consensus 169 al~dADvVIitag~prk~--g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvt 222 (337)
++++.|+||.++|....+ ..+..+.+..|+.-...+.+.+.+. ... .||++|
T Consensus 71 ~~~~iD~Vih~Ag~~~~~~~~~~~~~~~~~Nv~g~~~ll~aa~~~-~~~-~iV~~S 124 (324)
T TIGR03589 71 ALRGVDYVVHAAALKQVPAAEYNPFECIRTNINGAQNVIDAAIDN-GVK-RVVALS 124 (324)
T ss_pred HHhcCCEEEECcccCCCchhhcCHHHHHHHHHHHHHHHHHHHHHc-CCC-EEEEEe
Confidence 567899999988753222 1233457788888888888887774 333 566665
No 128
>PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional
Probab=96.49 E-value=0.024 Score=53.67 Aligned_cols=107 Identities=18% Similarity=0.169 Sum_probs=59.3
Q ss_pred EEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHH-HhHHHhHhhhccCCcccEEEecC-ccc-----ccC
Q 019713 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQAL-EGVAMELEDSLFPLLREVKIGIN-PYE-----LFE 171 (337)
Q Consensus 99 I~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l-~g~a~DL~d~~~~~~~~v~i~t~-~~e-----al~ 171 (337)
|.|+||+|+||++++..|+..|.- .+.+ ++........ .-...|+.|.. . . .+ ..+ .+.
T Consensus 2 ilVtGa~GfiG~~l~~~L~~~g~~----~v~~--~~~~~~~~~~~~~~~~~~~d~~-~----~---~~~~~~~~~~~~~~ 67 (308)
T PRK11150 2 IIVTGGAGFIGSNIVKALNDKGIT----DILV--VDNLKDGTKFVNLVDLDIADYM-D----K---EDFLAQIMAGDDFG 67 (308)
T ss_pred EEEecCCcHHHHHHHHHHHhCCCc----eEEE--ecCCCcchHHHhhhhhhhhhhh-h----H---HHHHHHHhcccccC
Confidence 789999999999999999987641 1322 2221111110 00112222211 0 0 00 011 234
Q ss_pred CCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 019713 172 DAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (337)
Q Consensus 172 dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvt 222 (337)
++|+||-+|+.+.............|......+.+.+.+. ++++|.+|
T Consensus 68 ~~d~Vih~A~~~~~~~~~~~~~~~~n~~~t~~ll~~~~~~---~~~~i~~S 115 (308)
T PRK11150 68 DIEAIFHEGACSSTTEWDGKYMMDNNYQYSKELLHYCLER---EIPFLYAS 115 (308)
T ss_pred CccEEEECceecCCcCCChHHHHHHHHHHHHHHHHHHHHc---CCcEEEEc
Confidence 7999999887543222333446777888778888887775 23566665
No 129
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=96.46 E-value=0.027 Score=55.14 Aligned_cols=72 Identities=28% Similarity=0.338 Sum_probs=42.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcE
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADv 175 (337)
++||+|+||+|.+|..++..|...+.- .+.|..+..+.. .|..+++.. ..+.+...+..+++++|+
T Consensus 1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp----~~~l~~l~s~~~----~g~~l~~~g------~~i~v~d~~~~~~~~vDv 66 (334)
T PRK14874 1 GYNVAVVGATGAVGREMLNILEERNFP----VDKLRLLASARS----AGKELSFKG------KELKVEDLTTFDFSGVDI 66 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCC----cceEEEEEcccc----CCCeeeeCC------ceeEEeeCCHHHHcCCCE
Confidence 479999999999999999999875431 123333322221 122222211 233443223346789999
Q ss_pred EEEecc
Q 019713 176 ALLIGA 181 (337)
Q Consensus 176 VIitag 181 (337)
||++.|
T Consensus 67 Vf~A~g 72 (334)
T PRK14874 67 ALFSAG 72 (334)
T ss_pred EEECCC
Confidence 998764
No 130
>PLN02214 cinnamoyl-CoA reductase
Probab=96.46 E-value=0.02 Score=55.72 Aligned_cols=109 Identities=12% Similarity=0.081 Sum_probs=63.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHh-HHHhHhhhccCCcccEEEe-c------Ccc
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEG-VAMELEDSLFPLLREVKIG-I------NPY 167 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g-~a~DL~d~~~~~~~~v~i~-t------~~~ 167 (337)
+++|.|+||+|++|++++..|+..+. .|.... ++.+.... ...++... ..++.+. . +..
T Consensus 10 ~~~vlVTGatGfIG~~l~~~L~~~G~-----~V~~~~----r~~~~~~~~~~~~~~~~----~~~~~~~~~Dl~d~~~~~ 76 (342)
T PLN02214 10 GKTVCVTGAGGYIASWIVKILLERGY-----TVKGTV----RNPDDPKNTHLRELEGG----KERLILCKADLQDYEALK 76 (342)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCcC-----EEEEEe----CCchhhhHHHHHHhhCC----CCcEEEEecCcCChHHHH
Confidence 46899999999999999999998775 243321 22121111 11111110 0112211 1 123
Q ss_pred cccCCCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 019713 168 ELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (337)
Q Consensus 168 eal~dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvt 222 (337)
++++++|+||.+++... ....+.+..|+.-...+.+.+.+. ... .||++|
T Consensus 77 ~~~~~~d~Vih~A~~~~---~~~~~~~~~nv~gt~~ll~aa~~~-~v~-r~V~~S 126 (342)
T PLN02214 77 AAIDGCDGVFHTASPVT---DDPEQMVEPAVNGAKFVINAAAEA-KVK-RVVITS 126 (342)
T ss_pred HHHhcCCEEEEecCCCC---CCHHHHHHHHHHHHHHHHHHHHhc-CCC-EEEEec
Confidence 56789999999887432 123456777888788888887775 323 455554
No 131
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=96.45 E-value=0.02 Score=53.53 Aligned_cols=69 Identities=20% Similarity=0.291 Sum_probs=43.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcEE
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADvV 176 (337)
|||+||| +|.||.+++..|...+.-- ..+.+ .+++.++++..+..+ + .+.+..+..+.++++|+|
T Consensus 1 m~IgiIG-~G~mG~aia~~L~~~g~~~--~~i~v----~~r~~~~~~~l~~~~-----~---~~~~~~~~~~~~~~aDvV 65 (258)
T PRK06476 1 MKIGFIG-TGAITEAMVTGLLTSPADV--SEIIV----SPRNAQIAARLAERF-----P---KVRIAKDNQAVVDRSDVV 65 (258)
T ss_pred CeEEEEC-cCHHHHHHHHHHHhCCCCh--heEEE----ECCCHHHHHHHHHHc-----C---CceEeCCHHHHHHhCCEE
Confidence 4899999 5999999999998876421 11322 245555554322111 1 133444555667899999
Q ss_pred EEec
Q 019713 177 LLIG 180 (337)
Q Consensus 177 Iita 180 (337)
+++.
T Consensus 66 ilav 69 (258)
T PRK06476 66 FLAV 69 (258)
T ss_pred EEEe
Confidence 9875
No 132
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=96.44 E-value=0.015 Score=55.34 Aligned_cols=65 Identities=11% Similarity=0.199 Sum_probs=42.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcE
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADv 175 (337)
++||+||| .|.+|..++..|+..+. .|.+ + |++.++.+.. ... .+....+..+.++++|+
T Consensus 2 ~~~IgviG-~G~mG~~~a~~l~~~g~-----~v~~--~--d~~~~~~~~~----~~~------g~~~~~~~~e~~~~~d~ 61 (296)
T PRK11559 2 TMKVGFIG-LGIMGKPMSKNLLKAGY-----SLVV--Y--DRNPEAVAEV----IAA------GAETASTAKAVAEQCDV 61 (296)
T ss_pred CceEEEEc-cCHHHHHHHHHHHHCCC-----eEEE--E--cCCHHHHHHH----HHC------CCeecCCHHHHHhcCCE
Confidence 36899999 59999999999988664 2433 3 4454444321 111 12233344567899999
Q ss_pred EEEec
Q 019713 176 ALLIG 180 (337)
Q Consensus 176 VIita 180 (337)
||++.
T Consensus 62 vi~~v 66 (296)
T PRK11559 62 IITML 66 (296)
T ss_pred EEEeC
Confidence 99875
No 133
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=96.42 E-value=0.008 Score=58.20 Aligned_cols=107 Identities=10% Similarity=0.099 Sum_probs=59.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHc-CCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEe-cC---c----
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAG-EVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN---P---- 166 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~-~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-t~---~---- 166 (337)
||||.|+||+|++|++++..|... +. .|.. + ++..+... ++... + .+.+. .| +
T Consensus 1 m~~ilVtGatGfiGs~l~~~L~~~~~~-----~V~~--~--~r~~~~~~----~~~~~--~---~~~~~~~Dl~~~~~~~ 62 (347)
T PRK11908 1 MKKVLILGVNGFIGHHLSKRILETTDW-----EVYG--M--DMQTDRLG----DLVNH--P---RMHFFEGDITINKEWI 62 (347)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhCCCC-----eEEE--E--eCcHHHHH----HhccC--C---CeEEEeCCCCCCHHHH
Confidence 468999999999999999999864 32 1332 2 22222211 11110 0 11111 11 1
Q ss_pred ccccCCCcEEEEecccC--CCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 167 YELFEDAEWALLIGAKP--RGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 167 ~eal~dADvVIitag~p--rk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
.+.++++|+||-+++.. .....+-......|+.-...+.+.+.+. . .++|.+|.
T Consensus 63 ~~~~~~~d~ViH~aa~~~~~~~~~~p~~~~~~n~~~~~~ll~aa~~~-~--~~~v~~SS 118 (347)
T PRK11908 63 EYHVKKCDVILPLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKY-G--KHLVFPST 118 (347)
T ss_pred HHHHcCCCEEEECcccCChHHhhcCcHHHHHHHHHHHHHHHHHHHhc-C--CeEEEEec
Confidence 13567999999877642 2112222334556666667777777764 2 46666653
No 134
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=96.42 E-value=0.02 Score=56.34 Aligned_cols=75 Identities=21% Similarity=0.298 Sum_probs=44.6
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCC
Q 019713 93 WKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFED 172 (337)
Q Consensus 93 ~~~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~d 172 (337)
|++|+||+|+||+|.+|..++..|...+.- .+.|..+..... .|.-+.+.. ....+...+.+++++
T Consensus 1 m~~~~~IaIvGATG~vG~eLlrlL~~~~hP----~~~l~~v~s~~~----aG~~l~~~~------~~l~~~~~~~~~~~~ 66 (336)
T PRK05671 1 MSQPLDIAVVGATGTVGEALVQILEERDFP----VGTLHLLASSES----AGHSVPFAG------KNLRVREVDSFDFSQ 66 (336)
T ss_pred CCCCCEEEEEccCCHHHHHHHHHHhhCCCC----ceEEEEEECccc----CCCeeccCC------cceEEeeCChHHhcC
Confidence 356689999999999999999999865431 134444322211 122222221 123333223345789
Q ss_pred CcEEEEecc
Q 019713 173 AEWALLIGA 181 (337)
Q Consensus 173 ADvVIitag 181 (337)
+|+|+++.+
T Consensus 67 vD~vFla~p 75 (336)
T PRK05671 67 VQLAFFAAG 75 (336)
T ss_pred CCEEEEcCC
Confidence 999998753
No 135
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=96.42 E-value=0.017 Score=55.37 Aligned_cols=73 Identities=15% Similarity=0.135 Sum_probs=50.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcE
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADv 175 (337)
..||.|+|| |.+|.++++.|+..++- .|.+ .+++.+++++.+.++.+.. +. ..+....+..+.++++|+
T Consensus 127 ~k~vlIlGa-GGaaraia~aL~~~G~~----~I~I----~nR~~~ka~~la~~l~~~~-~~-~~~~~~~~~~~~~~~aDi 195 (284)
T PRK12549 127 LERVVQLGA-GGAGAAVAHALLTLGVE----RLTI----FDVDPARAAALADELNARF-PA-ARATAGSDLAAALAAADG 195 (284)
T ss_pred CCEEEEECC-cHHHHHHHHHHHHcCCC----EEEE----ECCCHHHHHHHHHHHHhhC-CC-eEEEeccchHhhhCCCCE
Confidence 468999995 99999999999987752 2544 3567788888877776532 21 122211223457889999
Q ss_pred EEEe
Q 019713 176 ALLI 179 (337)
Q Consensus 176 VIit 179 (337)
||.+
T Consensus 196 VIna 199 (284)
T PRK12549 196 LVHA 199 (284)
T ss_pred EEEC
Confidence 9987
No 136
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=96.42 E-value=0.013 Score=56.29 Aligned_cols=65 Identities=18% Similarity=0.266 Sum_probs=43.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcE
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADv 175 (337)
|+||+||| .|.||..++..|+..+. .|.+ + |++.++++.. .+. ......+..++++++|+
T Consensus 1 m~~Ig~IG-lG~mG~~mA~~l~~~G~-----~V~v--~--d~~~~~~~~~----~~~------g~~~~~s~~~~~~~aDv 60 (296)
T PRK15461 1 MAAIAFIG-LGQMGSPMASNLLKQGH-----QLQV--F--DVNPQAVDAL----VDK------GATPAASPAQAAAGAEF 60 (296)
T ss_pred CCeEEEEe-eCHHHHHHHHHHHHCCC-----eEEE--E--cCCHHHHHHH----HHc------CCcccCCHHHHHhcCCE
Confidence 35899999 59999999999998774 2443 3 4455554432 211 11223345678899999
Q ss_pred EEEec
Q 019713 176 ALLIG 180 (337)
Q Consensus 176 VIita 180 (337)
||++.
T Consensus 61 Vi~~v 65 (296)
T PRK15461 61 VITML 65 (296)
T ss_pred EEEec
Confidence 99874
No 137
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=96.41 E-value=0.034 Score=53.23 Aligned_cols=116 Identities=16% Similarity=0.138 Sum_probs=61.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEecccc-chhhHHHhHHHhHhhhccCCcccEEEecC--cccccC--
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSE-RSLQALEGVAMELEDSLFPLLREVKIGIN--PYELFE-- 171 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d-~~~~~l~g~a~DL~d~~~~~~~~v~i~t~--~~eal~-- 171 (337)
|||.|+||+|++|++++..|+..+. .|.+ ++.. ...........++.+.. .......++.. ..++++
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~g~-----~V~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Dl~d~~~~~~~~~~~ 72 (338)
T PRK10675 1 MRVLVTGGSGYIGSHTCVQLLQNGH-----DVVI--LDNLCNSKRSVLPVIERLGGKH-PTFVEGDIRNEALLTEILHDH 72 (338)
T ss_pred CeEEEECCCChHHHHHHHHHHHCCC-----eEEE--EecCCCchHhHHHHHHHhcCCC-ceEEEccCCCHHHHHHHHhcC
Confidence 5899999999999999999988764 2443 2211 11111101111111100 00000111110 112233
Q ss_pred CCcEEEEecccCCCC--CCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 019713 172 DAEWALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (337)
Q Consensus 172 dADvVIitag~prk~--g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvt 222 (337)
++|+||.+++..... .....+.+..|+.....+.+.+++. .-. .+|.+|
T Consensus 73 ~~d~vvh~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~-~~v~~S 123 (338)
T PRK10675 73 AIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAA-NVK-NLIFSS 123 (338)
T ss_pred CCCEEEECCccccccchhhCHHHHHHHHHHHHHHHHHHHHHc-CCC-EEEEec
Confidence 589999887654211 1223466788888888888888875 222 455555
No 138
>PRK06545 prephenate dehydrogenase; Validated
Probab=96.39 E-value=0.017 Score=57.04 Aligned_cols=68 Identities=16% Similarity=0.295 Sum_probs=41.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcEE
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADvV 176 (337)
.||+||| +|.||.+++..|...+. .+.+ ++.+.+...+. .+. . . .... ...++..+++++||+|
T Consensus 1 ~~I~iIG-~GliG~siA~~L~~~G~-----~v~i--~~~~~~~~~~~-~a~--~--~-~~~~--~~~~~~~~~~~~aDlV 64 (359)
T PRK06545 1 RTVLIVG-LGLIGGSLALAIKAAGP-----DVFI--IGYDPSAAQLA-RAL--G--F-GVID--ELAADLQRAAAEADLI 64 (359)
T ss_pred CeEEEEE-eCHHHHHHHHHHHhcCC-----CeEE--EEeCCCHHHHH-HHh--c--C-CCCc--ccccCHHHHhcCCCEE
Confidence 4799999 59999999999988775 2444 33443322221 111 0 0 1101 1223445678999999
Q ss_pred EEec
Q 019713 177 LLIG 180 (337)
Q Consensus 177 Iita 180 (337)
|++.
T Consensus 65 ilav 68 (359)
T PRK06545 65 VLAV 68 (359)
T ss_pred EEeC
Confidence 9985
No 139
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=96.38 E-value=0.02 Score=55.03 Aligned_cols=96 Identities=13% Similarity=0.106 Sum_probs=55.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcEE
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADvV 176 (337)
|||+||| .|.+|..++..|+..+. .|.+ + |++.++++... +.... ......+..+.++++|+|
T Consensus 1 M~Ig~IG-lG~mG~~la~~L~~~g~-----~V~~--~--dr~~~~~~~l~----~~g~~---~~~s~~~~~~~~~~~dvI 63 (298)
T TIGR00872 1 MQLGLIG-LGRMGANIVRRLAKRGH-----DCVG--Y--DHDQDAVKAMK----EDRTT---GVANLRELSQRLSAPRVV 63 (298)
T ss_pred CEEEEEc-chHHHHHHHHHHHHCCC-----EEEE--E--ECCHHHHHHHH----HcCCc---ccCCHHHHHhhcCCCCEE
Confidence 4899999 59999999999998774 2443 3 45555554332 11100 000001112356789999
Q ss_pred EEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCc
Q 019713 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC 225 (337)
Q Consensus 177 Iitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPv 225 (337)
+++... ..++++.+.+.....++.+||..+|..
T Consensus 64 i~~vp~----------------~~~~~v~~~l~~~l~~g~ivid~st~~ 96 (298)
T TIGR00872 64 WVMVPH----------------GIVDAVLEELAPTLEKGDIVIDGGNSY 96 (298)
T ss_pred EEEcCc----------------hHHHHHHHHHHhhCCCCCEEEECCCCC
Confidence 987411 133444445555445677888888753
No 140
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=96.38 E-value=0.02 Score=55.39 Aligned_cols=105 Identities=21% Similarity=0.211 Sum_probs=62.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCc
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dAD 174 (337)
..+||+|||+ |.||..++..|...+.. .|.+ .+++.++++..+.++. ..+....+..+.+.++|
T Consensus 177 ~~~~V~ViGa-G~iG~~~a~~L~~~g~~----~V~v----~~r~~~ra~~la~~~g-------~~~~~~~~~~~~l~~aD 240 (311)
T cd05213 177 KGKKVLVIGA-GEMGELAAKHLAAKGVA----EITI----ANRTYERAEELAKELG-------GNAVPLDELLELLNEAD 240 (311)
T ss_pred cCCEEEEECc-HHHHHHHHHHHHHcCCC----EEEE----EeCCHHHHHHHHHHcC-------CeEEeHHHHHHHHhcCC
Confidence 4579999995 99999999998875531 2444 2556566554444332 11222223457788999
Q ss_pred EEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHHH
Q 019713 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNAL 230 (337)
Q Consensus 175 vVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t~ 230 (337)
+||.+.+.|.. ..++++..+ ....++.++|-+++|-|+-..
T Consensus 241 vVi~at~~~~~------------~~~~~~~~~---~~~~~~~~viDlavPrdi~~~ 281 (311)
T cd05213 241 VVISATGAPHY------------AKIVERAMK---KRSGKPRLIVDLAVPRDIEPE 281 (311)
T ss_pred EEEECCCCCch------------HHHHHHHHh---hCCCCCeEEEEeCCCCCCchh
Confidence 99998765531 122222222 211245688999999886443
No 141
>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial.
Probab=96.37 E-value=0.025 Score=56.23 Aligned_cols=72 Identities=11% Similarity=0.135 Sum_probs=43.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEec-CcccccCCCcE
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI-NPYELFEDAEW 175 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t-~~~eal~dADv 175 (337)
+||+|+||+|.||+.+...|....-|.- ..+.++... +..|...... .....+.. ++.+++++.|+
T Consensus 1 ~~VavvGATG~VG~~ll~~L~~e~~fp~---~~~~~~ss~----~s~g~~~~f~------~~~~~v~~~~~~~~~~~vDi 67 (366)
T TIGR01745 1 KNVGLVGWRGMVGSVLMQRMQEERDFDA---IRPVFFSTS----QLGQAAPSFG------GTTGTLQDAFDIDALKALDI 67 (366)
T ss_pred CeEEEEcCcCHHHHHHHHHHHhCCCCcc---ccEEEEEch----hhCCCcCCCC------CCcceEEcCcccccccCCCE
Confidence 4899999999999999998884554431 345444432 2222222111 11223322 23358999999
Q ss_pred EEEecc
Q 019713 176 ALLIGA 181 (337)
Q Consensus 176 VIitag 181 (337)
|++++|
T Consensus 68 vffa~g 73 (366)
T TIGR01745 68 IITCQG 73 (366)
T ss_pred EEEcCC
Confidence 999875
No 142
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=96.34 E-value=0.064 Score=51.08 Aligned_cols=115 Identities=20% Similarity=0.099 Sum_probs=73.2
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEec-C-------
Q 019713 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI-N------- 165 (337)
Q Consensus 94 ~~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t-~------- 165 (337)
.++.++.|+||++.||..+|..|+..|. .+.| +.+++++|+..+-||++.. . .++.+.. |
T Consensus 4 ~~~~~~lITGASsGIG~~~A~~lA~~g~-----~liL----vaR~~~kL~~la~~l~~~~-~--v~v~vi~~DLs~~~~~ 71 (265)
T COG0300 4 MKGKTALITGASSGIGAELAKQLARRGY-----NLIL----VARREDKLEALAKELEDKT-G--VEVEVIPADLSDPEAL 71 (265)
T ss_pred CCCcEEEEECCCchHHHHHHHHHHHCCC-----EEEE----EeCcHHHHHHHHHHHHHhh-C--ceEEEEECcCCChhHH
Confidence 3456899999999999999999999886 2444 4788999999999999754 1 1222211 1
Q ss_pred ------cccccCCCcEEEEecccCCC------CCCchhhhHHhhHHHH----HHHHHHHHhhcCCCeEEEEeC
Q 019713 166 ------PYELFEDAEWALLIGAKPRG------PGMERAGLLDINGQIF----AEQGKALNAVASRNVKVIVVG 222 (337)
Q Consensus 166 ------~~eal~dADvVIitag~prk------~g~~R~dll~~N~~I~----~~i~~~I~~~a~p~aivIvvt 222 (337)
..+...+.|+.|..||.-.- +..+-.+++.-|+--. +.+.+.+.+- .. +-||+++
T Consensus 72 ~~l~~~l~~~~~~IdvLVNNAG~g~~g~f~~~~~~~~~~mi~lN~~a~~~LT~~~lp~m~~~-~~-G~IiNI~ 142 (265)
T COG0300 72 ERLEDELKERGGPIDVLVNNAGFGTFGPFLELSLDEEEEMIQLNILALTRLTKAVLPGMVER-GA-GHIINIG 142 (265)
T ss_pred HHHHHHHHhcCCcccEEEECCCcCCccchhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CC-ceEEEEe
Confidence 11122358999998875421 1223345667675443 4445556653 33 4556665
No 143
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=96.32 E-value=0.016 Score=57.13 Aligned_cols=75 Identities=25% Similarity=0.382 Sum_probs=46.5
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCC
Q 019713 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (337)
Q Consensus 94 ~~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dA 173 (337)
.+.+||+||||+|.+|..+...|....-|.- -.|.++..+++ .|....+.. ..+.+..-+.++++++
T Consensus 3 ~~~~~VaIvGATG~vG~ell~lL~~h~~f~v---~~l~~~aS~~s----aGk~~~~~~------~~l~v~~~~~~~~~~~ 69 (347)
T PRK06728 3 EKGYHVAVVGATGAVGQKIIELLEKETKFNI---AEVTLLSSKRS----AGKTVQFKG------REIIIQEAKINSFEGV 69 (347)
T ss_pred CCCCEEEEEeCCCHHHHHHHHHHHHCCCCCc---ccEEEEECccc----CCCCeeeCC------cceEEEeCCHHHhcCC
Confidence 3457999999999999999999986555531 12444444322 222222211 1344443345678999
Q ss_pred cEEEEecc
Q 019713 174 EWALLIGA 181 (337)
Q Consensus 174 DvVIitag 181 (337)
|+|+++.+
T Consensus 70 Divf~a~~ 77 (347)
T PRK06728 70 DIAFFSAG 77 (347)
T ss_pred CEEEECCC
Confidence 99999763
No 144
>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]
Probab=96.31 E-value=0.06 Score=52.77 Aligned_cols=130 Identities=14% Similarity=0.182 Sum_probs=80.1
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcC----CCCCCCceEEEeccccchhh--HHHhHHHhHhhhcc------CCcccEE
Q 019713 94 KKMVNIAVSGAAGMIANHLLFKLAAGE----VLGPDQPIALKLLGSERSLQ--ALEGVAMELEDSLF------PLLREVK 161 (337)
Q Consensus 94 ~~~~KI~IIGAaG~VG~~la~~L~~~~----l~~e~~~v~L~L~d~d~~~~--~l~g~a~DL~d~~~------~~~~~v~ 161 (337)
..+.||+||| +|+=|+++|..+...- .| +..|.+..++.+.+.+ +|.- ...-.|-.. .+..++.
T Consensus 19 ~~~~kV~ivG-sGnWGsaiaki~~~n~~~~~~f--~~~Vrmwv~ee~i~~~~~~L~e-iIN~~heN~KYlpg~~lP~Nvv 94 (372)
T KOG2711|consen 19 RDPLKVCIVG-SGNWGSAIAKIVGENVKEFPIF--DPQVRMWVFEEEINGEAEKLTE-IINSRHENVKYLPGIKLPENVV 94 (372)
T ss_pred cCceEEEEEc-cChHHHHHHHHHhhhhhhcccc--CceeeEEEeccccCChhHHHHH-HhccccccccccCCccCCCCeE
Confidence 3467999999 5999999998776322 33 2347776655444332 2221 111111110 1234677
Q ss_pred EecCcccccCCCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC--------CC-chhHHHHH
Q 019713 162 IGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG--------NP-CNTNALIC 232 (337)
Q Consensus 162 i~t~~~eal~dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvt--------NP-vd~~t~i~ 232 (337)
..+|..++++|||++|+.. | -+.+.++++.|..+-.|++..|-.+ -| +.+++.++
T Consensus 95 Av~dl~ea~~dADilvf~v--P--------------hQf~~~ic~~l~g~vk~~~~aISL~KG~e~~~~g~~i~liS~iI 158 (372)
T KOG2711|consen 95 AVPDLVEAAKDADILVFVV--P--------------HQFIPRICEQLKGYVKPGATAISLIKGVEVGEEGPGIRLISQII 158 (372)
T ss_pred ecchHHHHhccCCEEEEeC--C--------------hhhHHHHHHHHhcccCCCCeEEEeecceeccCCCCceeehHHHH
Confidence 7788889999999999964 3 2556667777777767776654443 23 46677777
Q ss_pred HHHCCCCCCCeE
Q 019713 233 LKNAPSIPAKNF 244 (337)
Q Consensus 233 ~k~s~~~p~kvI 244 (337)
.+.. ++|..++
T Consensus 159 ~~~l-gI~~~vL 169 (372)
T KOG2711|consen 159 HRAL-GIPCSVL 169 (372)
T ss_pred HHHh-CCCceee
Confidence 7766 5765544
No 145
>PLN02583 cinnamoyl-CoA reductase
Probab=96.31 E-value=0.029 Score=53.36 Aligned_cols=114 Identities=11% Similarity=0.027 Sum_probs=61.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEE-----Eec--Ccccc
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-----IGI--NPYEL 169 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~-----i~t--~~~ea 169 (337)
++|.|+||+|.+|++++..|+..|. .|.+. ..+...........++.. . ..++. ++. .-.++
T Consensus 7 k~vlVTGatG~IG~~lv~~Ll~~G~-----~V~~~--~R~~~~~~~~~~~~~l~~-~---~~~~~~~~~Dl~d~~~~~~~ 75 (297)
T PLN02583 7 KSVCVMDASGYVGFWLVKRLLSRGY-----TVHAA--VQKNGETEIEKEIRGLSC-E---EERLKVFDVDPLDYHSILDA 75 (297)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCC-----EEEEE--EcCchhhhHHHHHHhccc-C---CCceEEEEecCCCHHHHHHH
Confidence 5799999999999999999998775 24432 111111122111111210 0 01111 111 12367
Q ss_pred cCCCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 019713 170 FEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (337)
Q Consensus 170 l~dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvt 222 (337)
++++|.|+..++.+........+++..|+.-...+.+.+.+.... ..||++|
T Consensus 76 l~~~d~v~~~~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~~v-~riV~~S 127 (297)
T PLN02583 76 LKGCSGLFCCFDPPSDYPSYDEKMVDVEVRAAHNVLEACAQTDTI-EKVVFTS 127 (297)
T ss_pred HcCCCEEEEeCccCCcccccHHHHHHHHHHHHHHHHHHHHhcCCc-cEEEEec
Confidence 889999886554332111112356778888778888877764212 2555554
No 146
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=96.29 E-value=0.07 Score=51.43 Aligned_cols=108 Identities=16% Similarity=0.133 Sum_probs=60.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHH----hHhhhccCCcccEEEecCcccccC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAM----ELEDSLFPLLREVKIGINPYELFE 171 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~----DL~d~~~~~~~~v~i~t~~~eal~ 171 (337)
.|||+|+|| |.||..++..|...|. .|.+. ++..+.++.... -+.+.... ..+.+...+.+...
T Consensus 2 ~m~I~IiGa-GaiG~~~a~~L~~~G~-----~V~lv----~r~~~~~~~i~~~~Gl~i~~~g~~--~~~~~~~~~~~~~~ 69 (305)
T PRK05708 2 SMTWHILGA-GSLGSLWACRLARAGL-----PVRLI----LRDRQRLAAYQQAGGLTLVEQGQA--SLYAIPAETADAAE 69 (305)
T ss_pred CceEEEECC-CHHHHHHHHHHHhCCC-----CeEEE----EechHHHHHHhhcCCeEEeeCCcc--eeeccCCCCccccc
Confidence 469999995 9999999999988764 36653 333233332111 01110000 01111112223456
Q ss_pred CCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHHHH
Q 019713 172 DAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALI 231 (337)
Q Consensus 172 dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t~i 231 (337)
..|+||++.- . .+ ..+..+.|..+..+++.|+.+-|=++....+
T Consensus 70 ~~D~viv~vK----~-----------~~-~~~al~~l~~~l~~~t~vv~lQNGv~~~e~l 113 (305)
T PRK05708 70 PIHRLLLACK----A-----------YD-AEPAVASLAHRLAPGAELLLLQNGLGSQDAV 113 (305)
T ss_pred ccCEEEEECC----H-----------Hh-HHHHHHHHHhhCCCCCEEEEEeCCCCCHHHH
Confidence 8899998851 1 11 2334445555556788889999988765544
No 147
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=96.26 E-value=0.025 Score=48.12 Aligned_cols=119 Identities=17% Similarity=0.192 Sum_probs=66.4
Q ss_pred EEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHH---HhHhhhccCCcccEE--EecCcc-cccCC
Q 019713 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVA---MELEDSLFPLLREVK--IGINPY-ELFED 172 (337)
Q Consensus 99 I~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a---~DL~d~~~~~~~~v~--i~t~~~-eal~d 172 (337)
|+|+|| |.||..+|..|...+. .|.+. .+.. .++... ..+.+.. -...+. ...... +....
T Consensus 1 I~I~G~-GaiG~~~a~~L~~~g~-----~V~l~----~r~~-~~~~~~~~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 67 (151)
T PF02558_consen 1 ILIIGA-GAIGSLYAARLAQAGH-----DVTLV----SRSP-RLEAIKEQGLTITGPD--GDETVQPPIVISAPSADAGP 67 (151)
T ss_dssp EEEEST-SHHHHHHHHHHHHTTC-----EEEEE----ESHH-HHHHHHHHCEEEEETT--EEEEEEEEEEESSHGHHHST
T ss_pred CEEECc-CHHHHHHHHHHHHCCC-----ceEEE----Eccc-cHHhhhheeEEEEecc--cceecccccccCcchhccCC
Confidence 789995 9999999999988664 35553 2332 232211 1111110 001111 111222 46789
Q ss_pred CcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHHHHHHHHCCCCCCCeEEecCc
Q 019713 173 AEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTR 249 (337)
Q Consensus 173 ADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t~i~~k~s~~~p~kvIG~gT~ 249 (337)
.|+||++.-. .-.++..+.|+.+..+++.|+.+-|=++..-.+. +..+ +++++++.|.
T Consensus 68 ~D~viv~vKa----------------~~~~~~l~~l~~~~~~~t~iv~~qNG~g~~~~l~-~~~~--~~~v~~g~~~ 125 (151)
T PF02558_consen 68 YDLVIVAVKA----------------YQLEQALQSLKPYLDPNTTIVSLQNGMGNEEVLA-EYFP--RPRVLGGVTT 125 (151)
T ss_dssp ESEEEE-SSG----------------GGHHHHHHHHCTGEETTEEEEEESSSSSHHHHHH-CHST--GSGEEEEEEE
T ss_pred CcEEEEEecc----------------cchHHHHHHHhhccCCCcEEEEEeCCCCcHHHHH-HHcC--CCcEEEEEEe
Confidence 9999998521 1124466667777778889999999877664443 3221 2366655444
No 148
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=96.23 E-value=0.067 Score=51.93 Aligned_cols=28 Identities=25% Similarity=0.260 Sum_probs=24.4
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 94 KKMVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 94 ~~~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
...+||.|+||+|+||++++..|+..|.
T Consensus 8 ~~~~~vLVtG~~GfIG~~l~~~L~~~G~ 35 (353)
T PLN02896 8 SATGTYCVTGATGYIGSWLVKLLLQRGY 35 (353)
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCCC
Confidence 4457999999999999999999998764
No 149
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=96.23 E-value=0.0045 Score=59.66 Aligned_cols=121 Identities=21% Similarity=0.214 Sum_probs=65.6
Q ss_pred EEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhcc--CC-------cccEEEecCcccc
Q 019713 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLF--PL-------LREVKIGINPYEL 169 (337)
Q Consensus 99 I~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~--~~-------~~~v~i~t~~~ea 169 (337)
|.|+||+|.+|+.++..|+..+. -.|+++ |+++..+.....++..... .+ ..+++-.......
T Consensus 1 VLVTGa~GSIGseL~rql~~~~p------~~lil~--d~~E~~l~~l~~~l~~~~~~~~v~~~~~~vigDvrd~~~l~~~ 72 (293)
T PF02719_consen 1 VLVTGAGGSIGSELVRQLLRYGP------KKLILF--DRDENKLYELERELRSRFPDPKVRFEIVPVIGDVRDKERLNRI 72 (293)
T ss_dssp EEEETTTSHHHHHHHHHHHCCB-------SEEEEE--ES-HHHHHHHHHHCHHHC--TTCEEEEE--CTSCCHHHHHHHH
T ss_pred CEEEccccHHHHHHHHHHHhcCC------CeEEEe--CCChhHHHHHHHHHhhcccccCcccccCceeecccCHHHHHHH
Confidence 67999999999999999988654 234454 4556666666666642210 11 1111100011355
Q ss_pred cC--CCcEEEEecccCCCCCCc--hhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC-----CCchhHH
Q 019713 170 FE--DAEWALLIGAKPRGPGME--RAGLLDINGQIFAEQGKALNAVASRNVKVIVVG-----NPCNTNA 229 (337)
Q Consensus 170 l~--dADvVIitag~prk~g~~--R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvt-----NPvd~~t 229 (337)
++ +.|+|+-+|+.-.-|=++ -.+.+..|+-=-+.+++...++ .-+ .+|.+| ||.++|.
T Consensus 73 ~~~~~pdiVfHaAA~KhVpl~E~~p~eav~tNv~GT~nv~~aa~~~-~v~-~~v~ISTDKAv~PtnvmG 139 (293)
T PF02719_consen 73 FEEYKPDIVFHAAALKHVPLMEDNPFEAVKTNVLGTQNVAEAAIEH-GVE-RFVFISTDKAVNPTNVMG 139 (293)
T ss_dssp TT--T-SEEEE------HHHHCCCHHHHHHHHCHHHHHHHHHHHHT-T-S-EEEEEEECGCSS--SHHH
T ss_pred HhhcCCCEEEEChhcCCCChHHhCHHHHHHHHHHHHHHHHHHHHHc-CCC-EEEEccccccCCCCcHHH
Confidence 67 999999998753322222 2355777776677777777776 444 444444 8888764
No 150
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=96.22 E-value=0.062 Score=48.90 Aligned_cols=25 Identities=20% Similarity=0.444 Sum_probs=22.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
..||+|+|+ |.+|+.++..|+..|+
T Consensus 21 ~~~V~IvG~-GglGs~ia~~La~~Gv 45 (200)
T TIGR02354 21 QATVAICGL-GGLGSNVAINLARAGI 45 (200)
T ss_pred CCcEEEECc-CHHHHHHHHHHHHcCC
Confidence 469999995 9999999999999987
No 151
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=96.20 E-value=0.022 Score=55.22 Aligned_cols=113 Identities=12% Similarity=0.029 Sum_probs=61.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEE-EecC--cc----c
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IGIN--PY----E 168 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~-i~t~--~~----e 168 (337)
.++|.|+||+|++|++++..|+..+. .|.. ++ ++..........+.. . .++. +..| +. +
T Consensus 4 ~k~ilItGatG~IG~~l~~~L~~~G~-----~V~~--~~--r~~~~~~~~~~~~~~-~----~~~~~~~~Dl~~~~~~~~ 69 (349)
T TIGR02622 4 GKKVLVTGHTGFKGSWLSLWLLELGA-----EVYG--YS--LDPPTSPNLFELLNL-A----KKIEDHFGDIRDAAKLRK 69 (349)
T ss_pred CCEEEEECCCChhHHHHHHHHHHCCC-----EEEE--Ee--CCCccchhHHHHHhh-c----CCceEEEccCCCHHHHHH
Confidence 36899999999999999999998764 2433 22 222211111001110 0 0111 1111 11 2
Q ss_pred ccC--CCcEEEEecccCCC--CCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 169 LFE--DAEWALLIGAKPRG--PGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 169 al~--dADvVIitag~prk--~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
.++ +.|+||.+++.+.. ...+-...+..|+.-...+.+.+.+. +....+|++|.
T Consensus 70 ~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~-~~~~~iv~~SS 127 (349)
T TIGR02622 70 AIAEFKPEIVFHLAAQPLVRKSYADPLETFETNVMGTVNLLEAIRAI-GSVKAVVNVTS 127 (349)
T ss_pred HHhhcCCCEEEECCcccccccchhCHHHHHHHhHHHHHHHHHHHHhc-CCCCEEEEEec
Confidence 333 35999998875421 11122345677887778888877664 32235666664
No 152
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=96.19 E-value=0.026 Score=55.44 Aligned_cols=73 Identities=26% Similarity=0.272 Sum_probs=44.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCc
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dAD 174 (337)
+.+||+||||+|.+|..+...|.....- ...|..+..+.+ .|.-..+. . ..+.+...+..++.++|
T Consensus 3 ~~~~vaIvGATG~vG~ellrlL~~~~hP----~~~l~~laS~~s----aG~~~~~~----~--~~~~v~~~~~~~~~~~D 68 (336)
T PRK08040 3 EGWNIALLGATGAVGEALLELLAERQFP----VGELYALASEES----AGETLRFG----G--KSVTVQDAAEFDWSQAQ 68 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhcCCCC----ceEEEEEEccCc----CCceEEEC----C--cceEEEeCchhhccCCC
Confidence 4579999999999999999988874331 134544444322 22212121 1 13444322345568999
Q ss_pred EEEEecc
Q 019713 175 WALLIGA 181 (337)
Q Consensus 175 vVIitag 181 (337)
+|+++.+
T Consensus 69 vvf~a~p 75 (336)
T PRK08040 69 LAFFVAG 75 (336)
T ss_pred EEEECCC
Confidence 9999753
No 153
>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=96.19 E-value=0.034 Score=55.32 Aligned_cols=73 Identities=12% Similarity=0.205 Sum_probs=41.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEe-cCcccccCCCc
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-INPYELFEDAE 174 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-t~~~eal~dAD 174 (337)
|+||+|+||+|.+|..+...|+...-+.- ..+.++... ...+...++.. ....+. ..+.++++++|
T Consensus 1 m~~VAIVGATG~vG~ell~llL~~~~f~~---~~l~~~ss~----~sg~~~~~f~g------~~~~v~~~~~~~~~~~~D 67 (369)
T PRK06598 1 MKKVGFVGWRGMVGSVLMQRMVEENDFDL---IEPVFFSTS----QAGGAAPSFGG------KEGTLQDAFDIDALKKLD 67 (369)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHhCCCCCc---CcEEEecch----hhCCcccccCC------CcceEEecCChhHhcCCC
Confidence 47999999999999999985555554431 123333322 11122112221 111222 22346789999
Q ss_pred EEEEecc
Q 019713 175 WALLIGA 181 (337)
Q Consensus 175 vVIitag 181 (337)
+|+++++
T Consensus 68 ivf~a~~ 74 (369)
T PRK06598 68 IIITCQG 74 (369)
T ss_pred EEEECCC
Confidence 9999764
No 154
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=96.16 E-value=0.015 Score=49.30 Aligned_cols=76 Identities=22% Similarity=0.125 Sum_probs=50.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCc
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dAD 174 (337)
+..+|.|+|| |.+|..+++.|...+.- .|.+ .+++.++++..+..+... ...+....+..+.+.++|
T Consensus 11 ~~~~vlviGa-Gg~ar~v~~~L~~~g~~----~i~i----~nRt~~ra~~l~~~~~~~----~~~~~~~~~~~~~~~~~D 77 (135)
T PF01488_consen 11 KGKRVLVIGA-GGAARAVAAALAALGAK----EITI----VNRTPERAEALAEEFGGV----NIEAIPLEDLEEALQEAD 77 (135)
T ss_dssp TTSEEEEESS-SHHHHHHHHHHHHTTSS----EEEE----EESSHHHHHHHHHHHTGC----SEEEEEGGGHCHHHHTES
T ss_pred CCCEEEEECC-HHHHHHHHHHHHHcCCC----EEEE----EECCHHHHHHHHHHcCcc----ccceeeHHHHHHHHhhCC
Confidence 4579999995 99999999999998762 2554 367777777665555111 111222234456788999
Q ss_pred EEEEecccC
Q 019713 175 WALLIGAKP 183 (337)
Q Consensus 175 vVIitag~p 183 (337)
+||.+-+.+
T Consensus 78 ivI~aT~~~ 86 (135)
T PF01488_consen 78 IVINATPSG 86 (135)
T ss_dssp EEEE-SSTT
T ss_pred eEEEecCCC
Confidence 999876543
No 155
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=96.16 E-value=0.018 Score=55.36 Aligned_cols=65 Identities=15% Similarity=0.259 Sum_probs=43.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcEE
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADvV 176 (337)
+||++|| .|.||+.+|..|...|+ .+.. + |++.++.... +.... ........++.++||+|
T Consensus 1 ~kIafIG-LG~MG~pmA~~L~~aG~-----~v~v--~--~r~~~ka~~~---~~~~G------a~~a~s~~eaa~~aDvV 61 (286)
T COG2084 1 MKIAFIG-LGIMGSPMAANLLKAGH-----EVTV--Y--NRTPEKAAEL---LAAAG------ATVAASPAEAAAEADVV 61 (286)
T ss_pred CeEEEEc-CchhhHHHHHHHHHCCC-----EEEE--E--eCChhhhhHH---HHHcC------CcccCCHHHHHHhCCEE
Confidence 5899999 69999999999999886 2443 2 4454553211 22211 12224457899999999
Q ss_pred EEec
Q 019713 177 LLIG 180 (337)
Q Consensus 177 Iita 180 (337)
|.+.
T Consensus 62 itmv 65 (286)
T COG2084 62 ITML 65 (286)
T ss_pred EEec
Confidence 9864
No 156
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=96.14 E-value=0.019 Score=54.38 Aligned_cols=111 Identities=14% Similarity=0.101 Sum_probs=62.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEe--cCcccccCCCc
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG--INPYELFEDAE 174 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~--t~~~eal~dAD 174 (337)
+||.|+||+|.+|++++..|+..+. .|.. + +++.+... ++.+.... .....++ .+..+.++++|
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~g~-----~V~~--~--~r~~~~~~----~~~~~~~~-~~~~D~~~~~~l~~~~~~~d 66 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQGE-----EVRV--L--VRPTSDRR----NLEGLDVE-IVEGDLRDPASLRKAVAGCR 66 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHCCC-----EEEE--E--EecCcccc----ccccCCce-EEEeeCCCHHHHHHHHhCCC
Confidence 4899999999999999999998774 2433 2 22222211 11110000 0001111 11234577899
Q ss_pred EEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 175 vVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
+||.+++.......+.......|+.....+.+.+.+. .-. .+|+++.
T Consensus 67 ~vi~~a~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~-~~v~~SS 113 (328)
T TIGR03466 67 ALFHVAADYRLWAPDPEEMYAANVEGTRNLLRAALEA-GVE-RVVYTSS 113 (328)
T ss_pred EEEEeceecccCCCCHHHHHHHHHHHHHHHHHHHHHh-CCC-eEEEEec
Confidence 9998876432222334456777888778888877764 222 5555553
No 157
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=96.14 E-value=0.046 Score=52.21 Aligned_cols=115 Identities=14% Similarity=0.015 Sum_probs=62.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEE-----ec--Cccc
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-----GI--NPYE 168 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i-----~t--~~~e 168 (337)
.++|.|+||+|+||++++..|+..|. .|.+...+. +.+... ..+.... ....++.. +. +-.+
T Consensus 5 ~k~vlVtG~~G~IG~~l~~~L~~~G~-----~V~~~~r~~----~~~~~~-~~~~~~~-~~~~~~~~~~~D~~d~~~~~~ 73 (325)
T PLN02989 5 GKVVCVTGASGYIASWIVKLLLFRGY-----TINATVRDP----KDRKKT-DHLLALD-GAKERLKLFKADLLDEGSFEL 73 (325)
T ss_pred CCEEEEECCchHHHHHHHHHHHHCCC-----EEEEEEcCC----cchhhH-HHHHhcc-CCCCceEEEeCCCCCchHHHH
Confidence 46899999999999999999998775 243322222 111111 0111000 00011211 11 1124
Q ss_pred ccCCCcEEEEecccCCCC-CC-chhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 019713 169 LFEDAEWALLIGAKPRGP-GM-ERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (337)
Q Consensus 169 al~dADvVIitag~prk~-g~-~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvt 222 (337)
.+++.|+||.++|..... .. .-...+..|..-...+.+.+.+. .....||++|
T Consensus 74 ~~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~g~~~ll~a~~~~-~~~~~iv~~S 128 (325)
T PLN02989 74 AIDGCETVFHTASPVAITVKTDPQVELINPAVNGTINVLRTCTKV-SSVKRVILTS 128 (325)
T ss_pred HHcCCCEEEEeCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHc-CCceEEEEec
Confidence 567899999988743211 11 12345677877777788877664 2223566655
No 158
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=96.13 E-value=0.029 Score=55.32 Aligned_cols=73 Identities=23% Similarity=0.345 Sum_probs=44.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCc
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dAD 174 (337)
..+||+|+||+|.+|..++..|...+.- .+.|..+..+++. |...+.. . ..+.+..-+.+++.++|
T Consensus 6 ~~~kVaVvGAtG~vG~eLlrlL~~~~hP----~~~l~~las~rsa----Gk~~~~~----~--~~~~v~~~~~~~~~~~D 71 (344)
T PLN02383 6 NGPSVAIVGVTGAVGQEFLSVLTDRDFP----YSSLKMLASARSA----GKKVTFE----G--RDYTVEELTEDSFDGVD 71 (344)
T ss_pred CCCeEEEEcCCChHHHHHHHHHHhCCCC----cceEEEEEccCCC----CCeeeec----C--ceeEEEeCCHHHHcCCC
Confidence 3479999999999999999988775442 1344433333322 2111111 1 12334333446789999
Q ss_pred EEEEecc
Q 019713 175 WALLIGA 181 (337)
Q Consensus 175 vVIitag 181 (337)
+|+++.+
T Consensus 72 ~vf~a~p 78 (344)
T PLN02383 72 IALFSAG 78 (344)
T ss_pred EEEECCC
Confidence 9999764
No 159
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=96.13 E-value=0.021 Score=54.47 Aligned_cols=99 Identities=17% Similarity=0.076 Sum_probs=56.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccC--CCc
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFE--DAE 174 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~--dAD 174 (337)
|||.|+||+|+||++++..|...+- +.. + ++.... ...|+.|.. ...+.++ +.|
T Consensus 1 m~iLVtG~~GfiGs~l~~~L~~~g~------V~~--~--~~~~~~---~~~Dl~d~~-----------~~~~~~~~~~~D 56 (299)
T PRK09987 1 MNILLFGKTGQVGWELQRALAPLGN------LIA--L--DVHSTD---YCGDFSNPE-----------GVAETVRKIRPD 56 (299)
T ss_pred CeEEEECCCCHHHHHHHHHhhccCC------EEE--e--cccccc---ccCCCCCHH-----------HHHHHHHhcCCC
Confidence 5899999999999999998876551 322 1 221111 111332211 0112344 589
Q ss_pred EEEEecccCCCC--CCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 019713 175 WALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (337)
Q Consensus 175 vVIitag~prk~--g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvt 222 (337)
+||-+++..... ..........|+.-...+++.+.+. . +++|.+|
T Consensus 57 ~Vih~Aa~~~~~~~~~~~~~~~~~N~~~~~~l~~aa~~~-g--~~~v~~S 103 (299)
T PRK09987 57 VIVNAAAHTAVDKAESEPEFAQLLNATSVEAIAKAANEV-G--AWVVHYS 103 (299)
T ss_pred EEEECCccCCcchhhcCHHHHHHHHHHHHHHHHHHHHHc-C--CeEEEEc
Confidence 999887643211 1122233467888888888888775 2 4555554
No 160
>PRK08507 prephenate dehydrogenase; Validated
Probab=96.12 E-value=0.058 Score=51.00 Aligned_cols=24 Identities=21% Similarity=0.430 Sum_probs=21.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
|||+||| .|.||.+++..|...+.
T Consensus 1 m~I~iIG-~G~mG~sla~~l~~~g~ 24 (275)
T PRK08507 1 MKIGIIG-LGLMGGSLGLALKEKGL 24 (275)
T ss_pred CEEEEEc-cCHHHHHHHHHHHhcCC
Confidence 4899999 59999999999988775
No 161
>TIGR01777 yfcH conserved hypothetical protein TIGR01777. This model represents a clade of proteins of unknown function including the E. coli yfcH protein.
Probab=96.10 E-value=0.014 Score=54.17 Aligned_cols=96 Identities=20% Similarity=0.231 Sum_probs=58.0
Q ss_pred EEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcEEEE
Q 019713 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALL 178 (337)
Q Consensus 99 I~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADvVIi 178 (337)
|.|+||+|++|++++..|+..+. .|.. + +++.+.......+ ... . +. .....++++++|+||.
T Consensus 1 vlVtGatG~iG~~l~~~L~~~g~-----~V~~--~--~r~~~~~~~~~~~--~~~-~----~~-~~~~~~~~~~~D~Vvh 63 (292)
T TIGR01777 1 ILITGGTGFIGRALTQRLTKDGH-----EVTI--L--TRSPPAGANTKWE--GYK-P----WA-PLAESEALEGADAVIN 63 (292)
T ss_pred CEEEcccchhhHHHHHHHHHcCC-----EEEE--E--eCCCCCCCcccce--eee-c----cc-ccchhhhcCCCCEEEE
Confidence 57999999999999999988764 2433 2 2222221110000 000 0 00 1234567899999999
Q ss_pred ecccCCCCC--C--chhhhHHhhHHHHHHHHHHHHhh
Q 019713 179 IGAKPRGPG--M--ERAGLLDINGQIFAEQGKALNAV 211 (337)
Q Consensus 179 tag~prk~g--~--~R~dll~~N~~I~~~i~~~I~~~ 211 (337)
+++.+...+ . ....+...|+...+.+.+.+.+.
T Consensus 64 ~a~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~ 100 (292)
T TIGR01777 64 LAGEPIADKRWTEERKQEIRDSRIDTTRALVEAIAAA 100 (292)
T ss_pred CCCCCcccccCCHHHHHHHHhcccHHHHHHHHHHHhc
Confidence 888654322 1 22345667888888898888875
No 162
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=96.10 E-value=0.019 Score=61.02 Aligned_cols=110 Identities=13% Similarity=0.091 Sum_probs=63.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHc-CCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccE---EEecC---cc
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAG-EVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREV---KIGIN---PY 167 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~-~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v---~i~t~---~~ 167 (337)
+++||.|+||+|+||++++..|... +. .|.. + ++....... +.... . .++ .++.. ..
T Consensus 314 ~~~~VLVTGatGFIGs~Lv~~Ll~~~g~-----~V~~--l--~r~~~~~~~----~~~~~-~--~~~~~gDl~d~~~~l~ 377 (660)
T PRK08125 314 RRTRVLILGVNGFIGNHLTERLLRDDNY-----EVYG--L--DIGSDAISR----FLGHP-R--FHFVEGDISIHSEWIE 377 (660)
T ss_pred cCCEEEEECCCchHHHHHHHHHHhCCCc-----EEEE--E--eCCchhhhh----hcCCC-c--eEEEeccccCcHHHHH
Confidence 4579999999999999999999873 43 1332 2 222211110 10000 0 011 11111 12
Q ss_pred cccCCCcEEEEecccCC--CCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 168 ELFEDAEWALLIGAKPR--GPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 168 eal~dADvVIitag~pr--k~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
++++++|+||-+|+... .......+....|+.-...+.+.+.+. . .++|.+|.
T Consensus 378 ~~l~~~D~ViHlAa~~~~~~~~~~~~~~~~~Nv~~t~~ll~a~~~~-~--~~~V~~SS 432 (660)
T PRK08125 378 YHIKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLKIIRYCVKY-N--KRIIFPST 432 (660)
T ss_pred HHhcCCCEEEECccccCchhhccCHHHHHHhhHHHHHHHHHHHHhc-C--CeEEEEcc
Confidence 45789999998876432 222234456778888888888888875 3 25665554
No 163
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=96.09 E-value=0.025 Score=56.19 Aligned_cols=27 Identities=11% Similarity=0.220 Sum_probs=23.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.++||+|||+.|.||.+++..|...|.
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~G~ 123 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLSGY 123 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHCCC
Confidence 347999999669999999999998774
No 164
>PRK07102 short chain dehydrogenase; Provisional
Probab=96.09 E-value=0.07 Score=48.58 Aligned_cols=26 Identities=31% Similarity=0.281 Sum_probs=23.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
|++|.|+||+|.+|.+++..|+..|.
T Consensus 1 ~~~vlItGas~giG~~~a~~l~~~G~ 26 (243)
T PRK07102 1 MKKILIIGATSDIARACARRYAAAGA 26 (243)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHhcCC
Confidence 46899999999999999999998775
No 165
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=96.06 E-value=0.049 Score=52.02 Aligned_cols=113 Identities=14% Similarity=0.055 Sum_probs=60.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEe-cC------cccc
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN------PYEL 169 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-t~------~~ea 169 (337)
++|.|+||+|+||++++..|+..|. .|.+..-+.. ..+.+. .+.... ....++.+. .| -.++
T Consensus 6 ~~vlVTGatG~iG~~l~~~L~~~g~-----~V~~~~r~~~-~~~~~~----~~~~~~-~~~~~~~~~~~Dl~~~~~~~~~ 74 (322)
T PLN02986 6 KLVCVTGASGYIASWIVKLLLLRGY-----TVKATVRDLT-DRKKTE----HLLALD-GAKERLKLFKADLLEESSFEQA 74 (322)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCC-----EEEEEECCCc-chHHHH----HHHhcc-CCCCceEEEecCCCCcchHHHH
Confidence 5899999999999999999998775 2433211111 111111 111100 001122211 11 1245
Q ss_pred cCCCcEEEEecccCC-CCCCchhhhHHhhHHHHHHHHHHHHhhcCCCe-EEEEeC
Q 019713 170 FEDAEWALLIGAKPR-GPGMERAGLLDINGQIFAEQGKALNAVASRNV-KVIVVG 222 (337)
Q Consensus 170 l~dADvVIitag~pr-k~g~~R~dll~~N~~I~~~i~~~I~~~a~p~a-ivIvvt 222 (337)
++++|+||.+++... .......+++..|+.-...+.+.+.+. +++ .||++|
T Consensus 75 ~~~~d~vih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~--~~v~rvV~~S 127 (322)
T PLN02986 75 IEGCDAVFHTASPVFFTVKDPQTELIDPALKGTINVLNTCKET--PSVKRVILTS 127 (322)
T ss_pred HhCCCEEEEeCCCcCCCCCCchhhhhHHHHHHHHHHHHHHHhc--CCccEEEEec
Confidence 778999999887421 111122345677777777777776653 232 455554
No 166
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=96.05 E-value=0.028 Score=53.90 Aligned_cols=92 Identities=13% Similarity=0.117 Sum_probs=51.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCC---C
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFED---A 173 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~d---A 173 (337)
|||+||| .|.||..++..|...+. .|.+ + |++.++++.. .+. ......+..+.+++ +
T Consensus 1 m~Ig~IG-lG~mG~~mA~~L~~~g~-----~v~v--~--dr~~~~~~~~----~~~------g~~~~~s~~~~~~~~~~a 60 (299)
T PRK12490 1 MKLGLIG-LGKMGGNMAERLREDGH-----EVVG--Y--DVNQEAVDVA----GKL------GITARHSLEELVSKLEAP 60 (299)
T ss_pred CEEEEEc-ccHHHHHHHHHHHhCCC-----EEEE--E--ECCHHHHHHH----HHC------CCeecCCHHHHHHhCCCC
Confidence 4899999 59999999999988764 2443 3 4555554432 211 12233333344444 6
Q ss_pred cEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 174 DvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
|+||++...+ +.++++...+.....++.+||..|+
T Consensus 61 dvVi~~vp~~---------------~~~~~v~~~i~~~l~~g~ivid~st 95 (299)
T PRK12490 61 RTIWVMVPAG---------------EVTESVIKDLYPLLSPGDIVVDGGN 95 (299)
T ss_pred CEEEEEecCc---------------hHHHHHHHHHhccCCCCCEEEECCC
Confidence 8998874211 1233333344433346667777754
No 167
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=96.04 E-value=0.14 Score=50.98 Aligned_cols=28 Identities=29% Similarity=0.373 Sum_probs=24.6
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 94 KKMVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 94 ~~~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.+.+||.|+||+|.+|++++..|+..+.
T Consensus 58 ~~~~kVLVtGatG~IG~~l~~~Ll~~G~ 85 (390)
T PLN02657 58 PKDVTVLVVGATGYIGKFVVRELVRRGY 85 (390)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC
Confidence 4557999999999999999999988764
No 168
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=96.01 E-value=0.021 Score=48.14 Aligned_cols=75 Identities=23% Similarity=0.244 Sum_probs=46.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccc-----------------hhhHHHhHHHhHhhhccCCccc
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSER-----------------SLQALEGVAMELEDSLFPLLRE 159 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~-----------------~~~~l~g~a~DL~d~~~~~~~~ 159 (337)
.||+|+|+ |.+|+.++..|+..|+ + .+. ++|.|. ...|.+..+..|.... |. .+
T Consensus 3 ~~v~iiG~-G~vGs~va~~L~~~Gv-~---~i~--lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~n-p~-~~ 73 (135)
T PF00899_consen 3 KRVLIIGA-GGVGSEVAKNLARSGV-G---KIT--LVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEIN-PD-VE 73 (135)
T ss_dssp -EEEEEST-SHHHHHHHHHHHHHTT-S---EEE--EEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHS-TT-SE
T ss_pred CEEEEECc-CHHHHHHHHHHHHhCC-C---cee--ecCCcceeecccccccccccccchhHHHHHHHHHHHHhc-Cc-ee
Confidence 58999995 9999999999999988 2 244 444443 1224444444444433 32 23
Q ss_pred EEEecCc------ccccCCCcEEEEec
Q 019713 160 VKIGINP------YELFEDAEWALLIG 180 (337)
Q Consensus 160 v~i~t~~------~eal~dADvVIita 180 (337)
++..... .+.++++|+||.+.
T Consensus 74 v~~~~~~~~~~~~~~~~~~~d~vi~~~ 100 (135)
T PF00899_consen 74 VEAIPEKIDEENIEELLKDYDIVIDCV 100 (135)
T ss_dssp EEEEESHCSHHHHHHHHHTSSEEEEES
T ss_pred eeeeecccccccccccccCCCEEEEec
Confidence 4433222 25567999998874
No 169
>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....
Probab=95.96 E-value=0.012 Score=52.90 Aligned_cols=179 Identities=16% Similarity=0.181 Sum_probs=92.1
Q ss_pred EEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCC--cEE
Q 019713 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA--EWA 176 (337)
Q Consensus 99 I~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dA--DvV 176 (337)
|.|+||+|++|++++..|...+.. + +.+...+......... .++......+.. .....+.+++. |.|
T Consensus 1 IlI~GatG~iG~~l~~~l~~~g~~-----v-~~~~~~~~~~~~~~~~-~~~~~~~~dl~~----~~~~~~~~~~~~~d~v 69 (236)
T PF01370_consen 1 ILITGATGFIGSALVRQLLKKGHE-----V-IVLSRSSNSESFEEKK-LNVEFVIGDLTD----KEQLEKLLEKANIDVV 69 (236)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTTE-----E-EEEESCSTGGHHHHHH-TTEEEEESETTS----HHHHHHHHHHHTESEE
T ss_pred EEEEccCCHHHHHHHHHHHHcCCc-----c-cccccccccccccccc-ceEEEEEeeccc----cccccccccccCceEE
Confidence 789999999999999999988862 2 2222222111111111 000000000000 00122445555 999
Q ss_pred EEecccCCC--CCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHHHHHHHHCCCCC--C-CeEEe-----
Q 019713 177 LLIGAKPRG--PGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIP--A-KNFHA----- 246 (337)
Q Consensus 177 Iitag~prk--~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t~i~~k~s~~~p--~-kvIG~----- 246 (337)
+.+++.+.. ....-.+....|+...+.+.+.+.+. .. .++|+++- ..+-. ... ..| . .-+..
T Consensus 70 i~~a~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~-~~-~~~i~~sS-~~~y~----~~~-~~~~~e~~~~~~~~~Y~ 141 (236)
T PF01370_consen 70 IHLAAFSSNPESFEDPEEIIEANVQGTRNLLEAAREA-GV-KRFIFLSS-ASVYG----DPD-GEPIDEDSPINPLSPYG 141 (236)
T ss_dssp EEEBSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHH-TT-SEEEEEEE-GGGGT----SSS-SSSBETTSGCCHSSHHH
T ss_pred EEeeccccccccccccccccccccccccccccccccc-cc-cccccccc-ccccc----ccc-ccccccccccccccccc
Confidence 998876431 11234466788999999999999987 33 46666664 21100 000 010 0 00111
Q ss_pred cCchhHHHHHHHHHHHhCCCcccccceEEEecc----C-CCcccccccceEcCee
Q 019713 247 LTRLDENRAKCQLALKAGVFYDKVSNMTIWGNH----S-TTQVPDFLNARINGLP 296 (337)
Q Consensus 247 gT~LDs~R~~~~lA~~lgv~~~~V~~v~V~GnH----G-~t~vp~~S~a~V~G~p 296 (337)
.+.....++....+++.++....++-..|+|-+ + ...++.|-..-..|+|
T Consensus 142 ~~K~~~e~~~~~~~~~~~~~~~~~R~~~vyG~~~~~~~~~~~~~~~~~~~~~~~~ 196 (236)
T PF01370_consen 142 ASKRAAEELLRDYAKKYGLRVTILRPPNVYGPGNPNNNSSSFLPSLIRQALKGKP 196 (236)
T ss_dssp HHHHHHHHHHHHHHHHHTSEEEEEEESEEESTTSSSSSTSSHHHHHHHHHHTTSS
T ss_pred cccccccccccccccccccccccccccccccccccccccccccchhhHHhhcCCc
Confidence 111222344444555668888777755789966 2 3344555444445654
No 170
>PLN02240 UDP-glucose 4-epimerase
Probab=95.94 E-value=0.11 Score=49.92 Aligned_cols=115 Identities=17% Similarity=0.159 Sum_probs=60.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccc--hhhHHHhHHHhHhhhccCCcccEEEe-c--Ccc---
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSER--SLQALEGVAMELEDSLFPLLREVKIG-I--NPY--- 167 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~--~~~~l~g~a~DL~d~~~~~~~~v~i~-t--~~~--- 167 (337)
.+||.|+||+|++|++++..|+..+. .|.+ ++... ..+... ...++.. ....++... . .+.
T Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g~-----~V~~--~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~D~~~~~~l 73 (352)
T PLN02240 5 GRTILVTGGAGYIGSHTVLQLLLAGY-----KVVV--IDNLDNSSEEALR-RVKELAG---DLGDNLVFHKVDLRDKEAL 73 (352)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-----EEEE--EeCCCcchHHHHH-HHHHhhc---ccCccceEEecCcCCHHHH
Confidence 46899999999999999999988763 2433 22111 111111 1111110 000111111 0 111
Q ss_pred -cccC--CCcEEEEecccCC-CCC-CchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 168 -ELFE--DAEWALLIGAKPR-GPG-MERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 168 -eal~--dADvVIitag~pr-k~g-~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
+.++ +.|+||.+++.+. ... ......+..|......+.+.+.+. ... .+|.+|.
T Consensus 74 ~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~-~~v~~Ss 132 (352)
T PLN02240 74 EKVFASTRFDAVIHFAGLKAVGESVAKPLLYYDNNLVGTINLLEVMAKH-GCK-KLVFSSS 132 (352)
T ss_pred HHHHHhCCCCEEEEccccCCccccccCHHHHHHHHHHHHHHHHHHHHHc-CCC-EEEEEcc
Confidence 2232 6899999887542 111 123456778888777888877764 222 4566553
No 171
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=95.91 E-value=0.036 Score=53.18 Aligned_cols=24 Identities=17% Similarity=0.382 Sum_probs=21.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
|||+||| .|.||..++..|...+.
T Consensus 1 m~Ig~IG-lG~MG~~mA~~L~~~g~ 24 (301)
T PRK09599 1 MQLGMIG-LGRMGGNMARRLLRGGH 24 (301)
T ss_pred CEEEEEc-ccHHHHHHHHHHHHCCC
Confidence 4899999 59999999999998764
No 172
>PRK08267 short chain dehydrogenase; Provisional
Probab=95.89 E-value=0.031 Score=51.44 Aligned_cols=26 Identities=31% Similarity=0.285 Sum_probs=23.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
|++|.|+||+|.+|..++..|+..|.
T Consensus 1 mk~vlItGasg~iG~~la~~l~~~G~ 26 (260)
T PRK08267 1 MKSIFITGAASGIGRATALLFAAEGW 26 (260)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHCCC
Confidence 35799999999999999999998774
No 173
>PLN02256 arogenate dehydrogenase
Probab=95.88 E-value=0.13 Score=49.80 Aligned_cols=25 Identities=16% Similarity=0.279 Sum_probs=21.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcC
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGE 120 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~ 120 (337)
+.+||+||| .|.||.+++..|...+
T Consensus 35 ~~~kI~IIG-~G~mG~slA~~L~~~G 59 (304)
T PLN02256 35 RKLKIGIVG-FGNFGQFLAKTFVKQG 59 (304)
T ss_pred CCCEEEEEe-eCHHHHHHHHHHHhCC
Confidence 457999999 5999999999998755
No 174
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=95.84 E-value=0.044 Score=46.63 Aligned_cols=74 Identities=19% Similarity=0.236 Sum_probs=46.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCc
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dAD 174 (337)
+..+|+|+|+ |.+|..++..|...+. . .+.+ + +++.++++..+.++.... .... ..+..+.++++|
T Consensus 18 ~~~~i~iiG~-G~~g~~~a~~l~~~g~-~---~v~v--~--~r~~~~~~~~~~~~~~~~----~~~~-~~~~~~~~~~~D 83 (155)
T cd01065 18 KGKKVLILGA-GGAARAVAYALAELGA-A---KIVI--V--NRTLEKAKALAERFGELG----IAIA-YLDLEELLAEAD 83 (155)
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHCCC-C---EEEE--E--cCCHHHHHHHHHHHhhcc----ccee-ecchhhccccCC
Confidence 3478999995 9999999999987652 1 2443 2 455556555444333110 0111 234445589999
Q ss_pred EEEEeccc
Q 019713 175 WALLIGAK 182 (337)
Q Consensus 175 vVIitag~ 182 (337)
+||.+...
T Consensus 84 vvi~~~~~ 91 (155)
T cd01065 84 LIINTTPV 91 (155)
T ss_pred EEEeCcCC
Confidence 99998643
No 175
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=95.82 E-value=0.027 Score=51.97 Aligned_cols=29 Identities=24% Similarity=0.264 Sum_probs=25.1
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 93 WKKMVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 93 ~~~~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
..+++||.|+||+|.+|..++..|+..+.
T Consensus 14 ~~~~~~ilItGasG~iG~~l~~~L~~~g~ 42 (251)
T PLN00141 14 NVKTKTVFVAGATGRTGKRIVEQLLAKGF 42 (251)
T ss_pred cccCCeEEEECCCcHHHHHHHHHHHhCCC
Confidence 35578999999999999999999988764
No 176
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=95.80 E-value=0.042 Score=53.83 Aligned_cols=90 Identities=12% Similarity=0.075 Sum_probs=52.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcEE
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADvV 176 (337)
++|+||| .|.||..+|..|...|. .|.. + |++.+.... . +....+..+.+++||+|
T Consensus 147 ~~VgIIG-~G~IG~~vA~~L~~~G~-----~V~~--~--d~~~~~~~~----~----------~~~~~~l~ell~~aDiV 202 (330)
T PRK12480 147 MTVAIIG-TGRIGAATAKIYAGFGA-----TITA--Y--DAYPNKDLD----F----------LTYKDSVKEAIKDADII 202 (330)
T ss_pred CEEEEEC-CCHHHHHHHHHHHhCCC-----EEEE--E--eCChhHhhh----h----------hhccCCHHHHHhcCCEE
Confidence 5899999 59999999999876553 2433 3 333222110 0 01123456789999999
Q ss_pred EEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCC
Q 019713 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (337)
Q Consensus 177 Iitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNP 224 (337)
++.... . ..+..++. .+.+.. .++++++|+++--
T Consensus 203 il~lP~-----t------~~t~~li~--~~~l~~-mk~gavlIN~aRG 236 (330)
T PRK12480 203 SLHVPA-----N------KESYHLFD--KAMFDH-VKKGAILVNAARG 236 (330)
T ss_pred EEeCCC-----c------HHHHHHHh--HHHHhc-CCCCcEEEEcCCc
Confidence 987521 1 11112221 122333 3688999998853
No 177
>PLN02572 UDP-sulfoquinovose synthase
Probab=95.77 E-value=0.041 Score=55.83 Aligned_cols=28 Identities=18% Similarity=0.182 Sum_probs=24.5
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 94 KKMVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 94 ~~~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.+++||.|+||+|+||++++..|+..|.
T Consensus 45 ~~~k~VLVTGatGfIGs~Lv~~L~~~G~ 72 (442)
T PLN02572 45 SKKKKVMVIGGDGYCGWATALHLSKRGY 72 (442)
T ss_pred ccCCEEEEECCCcHHHHHHHHHHHHCCC
Confidence 3457899999999999999999998764
No 178
>PRK12746 short chain dehydrogenase; Provisional
Probab=95.76 E-value=0.22 Score=45.39 Aligned_cols=25 Identities=24% Similarity=0.268 Sum_probs=22.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
++|.|+||+|.+|++++..|+..|.
T Consensus 7 ~~ilItGasg~iG~~la~~l~~~G~ 31 (254)
T PRK12746 7 KVALVTGASRGIGRAIAMRLANDGA 31 (254)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCC
Confidence 6899999999999999999988764
No 179
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=95.76 E-value=0.064 Score=55.82 Aligned_cols=127 Identities=19% Similarity=0.137 Sum_probs=79.9
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCc-ccEEEec-----Cc
Q 019713 93 WKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLL-REVKIGI-----NP 166 (337)
Q Consensus 93 ~~~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~-~~v~i~t-----~~ 166 (337)
+-+-++|-|+||+|.+|+.++..++..+. -.|.+++. ++.++.-..++|.+.. +.. ....+++ --
T Consensus 247 ~~~gK~vLVTGagGSiGsel~~qil~~~p------~~i~l~~~--~E~~~~~i~~el~~~~-~~~~~~~~igdVrD~~~~ 317 (588)
T COG1086 247 MLTGKTVLVTGGGGSIGSELCRQILKFNP------KEIILFSR--DEYKLYLIDMELREKF-PELKLRFYIGDVRDRDRV 317 (588)
T ss_pred HcCCCEEEEeCCCCcHHHHHHHHHHhcCC------CEEEEecC--chHHHHHHHHHHHhhC-CCcceEEEecccccHHHH
Confidence 34457899999999999999999988754 24445544 4556655666676542 211 1112221 12
Q ss_pred ccccCC--CcEEEEecccCCCCCCchh--hhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC----CCchhHH
Q 019713 167 YELFED--AEWALLIGAKPRGPGMERA--GLLDINGQIFAEQGKALNAVASRNVKVIVVG----NPCNTNA 229 (337)
Q Consensus 167 ~eal~d--ADvVIitag~prk~g~~R~--dll~~N~~I~~~i~~~I~~~a~p~aivIvvt----NPvd~~t 229 (337)
..++++ .|+|+-+|+...-|-+|.. +-...|+-=-+.++++..+. .=...|.+-| ||.|+|.
T Consensus 318 ~~~~~~~kvd~VfHAAA~KHVPl~E~nP~Eai~tNV~GT~nv~~aa~~~-~V~~~V~iSTDKAV~PtNvmG 387 (588)
T COG1086 318 ERAMEGHKVDIVFHAAALKHVPLVEYNPEEAIKTNVLGTENVAEAAIKN-GVKKFVLISTDKAVNPTNVMG 387 (588)
T ss_pred HHHHhcCCCceEEEhhhhccCcchhcCHHHHHHHhhHhHHHHHHHHHHh-CCCEEEEEecCcccCCchHhh
Confidence 467788 9999999886666655543 44666766666677766664 3343444443 8988863
No 180
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=95.75 E-value=0.052 Score=54.28 Aligned_cols=27 Identities=26% Similarity=0.169 Sum_probs=23.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
+++||+|+||+|.+|..+...|.....
T Consensus 37 ~~~kVaIvGATG~vG~eLlrlL~~hP~ 63 (381)
T PLN02968 37 EKKRIFVLGASGYTGAEVRRLLANHPD 63 (381)
T ss_pred cccEEEEECCCChHHHHHHHHHHhCCC
Confidence 446999999999999999999988754
No 181
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=95.75 E-value=0.037 Score=51.65 Aligned_cols=95 Identities=16% Similarity=0.224 Sum_probs=57.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCC--CcE
Q 019713 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFED--AEW 175 (337)
Q Consensus 98 KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~d--ADv 175 (337)
||.|+||+|++|++++..|...+. .|.. + .+. ..|+.+.. ...+++++ .|+
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~g~-----~v~~--~--~r~-------~~d~~~~~-----------~~~~~~~~~~~d~ 53 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPEGR-----VVVA--L--TSS-------QLDLTDPE-----------ALERLLRAIRPDA 53 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhcCC-----EEEE--e--CCc-------ccCCCCHH-----------HHHHHHHhCCCCE
Confidence 689999999999999999988664 2332 1 221 12222211 11233444 499
Q ss_pred EEEecccCCCCC--CchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 019713 176 ALLIGAKPRGPG--MERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (337)
Q Consensus 176 VIitag~prk~g--~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvt 222 (337)
||.+++....+. .....+...|......+++.+.+. . ..+|++|
T Consensus 54 vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~--~~~v~~S 99 (287)
T TIGR01214 54 VVNTAAYTDVDGAESDPEKAFAVNALAPQNLARAAARH-G--ARLVHIS 99 (287)
T ss_pred EEECCccccccccccCHHHHHHHHHHHHHHHHHHHHHc-C--CeEEEEe
Confidence 998887543221 123445677888888888887764 2 2555555
No 182
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=95.74 E-value=0.084 Score=49.17 Aligned_cols=96 Identities=20% Similarity=0.242 Sum_probs=59.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcEE
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADvV 176 (337)
+||+|||+ |.||..++-.+-.+.. + -++.+. .|.+.+++.. ++... ..+.. ++..+.+.+.|++
T Consensus 1 l~vgiVGc-GaIG~~l~e~v~~~~~-~--~e~v~v---~D~~~ek~~~----~~~~~---~~~~~--s~ide~~~~~Dlv 64 (255)
T COG1712 1 LKVGIVGC-GAIGKFLLELVRDGRV-D--FELVAV---YDRDEEKAKE----LEASV---GRRCV--SDIDELIAEVDLV 64 (255)
T ss_pred CeEEEEec-cHHHHHHHHHHhcCCc-c--eeEEEE---ecCCHHHHHH----HHhhc---CCCcc--ccHHHHhhcccee
Confidence 58999996 9999999887766542 1 112221 3556666543 22211 11111 3334555999999
Q ss_pred EEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCc
Q 019713 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC 225 (337)
Q Consensus 177 Iitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPv 225 (337)
|.+|+ .+.+++++.++-+. +.|++|+-++-=+
T Consensus 65 VEaAS----------------~~Av~e~~~~~L~~-g~d~iV~SVGALa 96 (255)
T COG1712 65 VEAAS----------------PEAVREYVPKILKA-GIDVIVMSVGALA 96 (255)
T ss_pred eeeCC----------------HHHHHHHhHHHHhc-CCCEEEEechhcc
Confidence 99885 46678888777774 6787766665444
No 183
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=95.74 E-value=0.09 Score=49.77 Aligned_cols=69 Identities=23% Similarity=0.383 Sum_probs=41.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcE
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADv 175 (337)
|+||+|||+ |.||..++..|...+. + . .+ ..++ |++.++++..+. . + .....++..+.+.++|+
T Consensus 1 mmrIgIIG~-G~iG~~ia~~l~~~~~-~-~-el-v~v~--d~~~~~a~~~a~----~---~--~~~~~~~~~ell~~~Dv 64 (265)
T PRK13304 1 MLKIGIVGC-GAIASLITKAILSGRI-N-A-EL-YAFY--DRNLEKAENLAS----K---T--GAKACLSIDELVEDVDL 64 (265)
T ss_pred CCEEEEECc-cHHHHHHHHHHHcCCC-C-e-EE-EEEE--CCCHHHHHHHHH----h---c--CCeeECCHHHHhcCCCE
Confidence 479999995 9999999998876542 1 0 12 2223 445555443211 1 1 12233444444589999
Q ss_pred EEEec
Q 019713 176 ALLIG 180 (337)
Q Consensus 176 VIita 180 (337)
|++++
T Consensus 65 Vvi~a 69 (265)
T PRK13304 65 VVECA 69 (265)
T ss_pred EEEcC
Confidence 99986
No 184
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=95.73 E-value=0.11 Score=46.16 Aligned_cols=23 Identities=26% Similarity=0.501 Sum_probs=21.3
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCC
Q 019713 98 NIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 98 KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
||+|||+ |.+|+.++..|+..|+
T Consensus 1 ~VlViG~-GglGs~ia~~La~~Gv 23 (174)
T cd01487 1 KVGIAGA-GGLGSNIAVLLARSGV 23 (174)
T ss_pred CEEEECc-CHHHHHHHHHHHHcCC
Confidence 6999995 9999999999999887
No 185
>PRK12939 short chain dehydrogenase; Provisional
Probab=95.72 E-value=0.13 Score=46.47 Aligned_cols=26 Identities=23% Similarity=0.128 Sum_probs=23.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.++|.|+||+|.+|.+++..|+..|.
T Consensus 7 ~~~vlItGa~g~iG~~la~~l~~~G~ 32 (250)
T PRK12939 7 GKRALVTGAARGLGAAFAEALAEAGA 32 (250)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHcCC
Confidence 46899999999999999999998774
No 186
>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.69 E-value=0.14 Score=49.26 Aligned_cols=117 Identities=19% Similarity=0.194 Sum_probs=76.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEec----C-----
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI----N----- 165 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t----~----- 165 (337)
..+.|.|+||+.-||.++|+.|+..|.. +.+. .+..++++-++.++.... +.. ++.+.. +
T Consensus 11 ~~kvVvITGASsGIG~~lA~~la~~G~~-----l~lv----ar~~rrl~~v~~~l~~~~-~~~-~v~~~~~Dvs~~~~~~ 79 (282)
T KOG1205|consen 11 AGKVVLITGASSGIGEALAYELAKRGAK-----LVLV----ARRARRLERVAEELRKLG-SLE-KVLVLQLDVSDEESVK 79 (282)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHhCCCc-----eEEe----ehhhhhHHHHHHHHHHhC-CcC-ccEEEeCccCCHHHHH
Confidence 3467899999999999999999998872 3332 345566666666676654 222 222211 1
Q ss_pred -----cccccCCCcEEEEecccCCCCCC-c------hhhhHHhh----HHHHHHHHHHHHhhcCCCeEEEEeCCCc
Q 019713 166 -----PYELFEDAEWALLIGAKPRGPGM-E------RAGLLDIN----GQIFAEQGKALNAVASRNVKVIVVGNPC 225 (337)
Q Consensus 166 -----~~eal~dADvVIitag~prk~g~-~------R~dll~~N----~~I~~~i~~~I~~~a~p~aivIvvtNPv 225 (337)
....|.+.|+.|..||..+ .+. + ....++.| +-+-+...+.+++- + ++.|++++...
T Consensus 80 ~~~~~~~~~fg~vDvLVNNAG~~~-~~~~~~~~~~~~~~~mdtN~~G~V~~Tk~alp~m~~r-~-~GhIVvisSia 152 (282)
T KOG1205|consen 80 KFVEWAIRHFGRVDVLVNNAGISL-VGFLEDTDIEDVRNVMDTNVFGTVYLTKAALPSMKKR-N-DGHIVVISSIA 152 (282)
T ss_pred HHHHHHHHhcCCCCEEEecCcccc-ccccccCcHHHHHHHhhhhchhhHHHHHHHHHHhhhc-C-CCeEEEEeccc
Confidence 1135779999999999876 332 1 22344444 56677888888885 3 67888877644
No 187
>PRK06196 oxidoreductase; Provisional
Probab=95.65 E-value=0.079 Score=50.66 Aligned_cols=114 Identities=10% Similarity=0.001 Sum_probs=60.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecC---------c
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGIN---------P 166 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~---------~ 166 (337)
.++|.|+||+|.+|.+++..|+..|. .|.+. +++.++++....++.... .+ ...++.. -
T Consensus 26 ~k~vlITGasggIG~~~a~~L~~~G~-----~Vv~~----~R~~~~~~~~~~~l~~v~-~~--~~Dl~d~~~v~~~~~~~ 93 (315)
T PRK06196 26 GKTAIVTGGYSGLGLETTRALAQAGA-----HVIVP----ARRPDVAREALAGIDGVE-VV--MLDLADLESVRAFAERF 93 (315)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-----EEEEE----eCCHHHHHHHHHHhhhCe-EE--EccCCCHHHHHHHHHHH
Confidence 35899999999999999999998775 24442 344444443333332111 00 1111100 0
Q ss_pred ccccCCCcEEEEecccCCCCCC---c-hhhhHHhh----HHHHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 167 YELFEDAEWALLIGAKPRGPGM---E-RAGLLDIN----GQIFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 167 ~eal~dADvVIitag~prk~g~---~-R~dll~~N----~~I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
.+.+.+.|++|..+|....+.. + -...+..| ..+.+.+.+.+++. ..+.||+++-
T Consensus 94 ~~~~~~iD~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~--~~~~iV~vSS 156 (315)
T PRK06196 94 LDSGRRIDILINNAGVMACPETRVGDGWEAQFATNHLGHFALVNLLWPALAAG--AGARVVALSS 156 (315)
T ss_pred HhcCCCCCEEEECCCCCCCCCccCCccHHHHHHHhhHHHHHHHHHHHHHHHhc--CCCeEEEECC
Confidence 1123578999998875322211 1 11223444 33456666666663 3456777663
No 188
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=95.64 E-value=0.034 Score=52.11 Aligned_cols=115 Identities=18% Similarity=0.171 Sum_probs=60.1
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEE---Eec--CcccccCC
Q 019713 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK---IGI--NPYELFED 172 (337)
Q Consensus 98 KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~---i~t--~~~eal~d 172 (337)
||.|+||+|++|.+++..|+..+.-. .|. .++........+ ...++.+. + ...+. ++. +..+++++
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~~~~---~v~--~~~~~~~~~~~~-~~~~~~~~--~-~~~~~~~Dl~~~~~~~~~~~~ 71 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEHPDA---EVI--VLDKLTYAGNLE-NLADLEDN--P-RYRFVKGDIGDRELVSRLFTE 71 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhCCCC---EEE--EecCCCcchhhh-hhhhhccC--C-CcEEEEcCCcCHHHHHHHHhh
Confidence 58999999999999999998754210 132 222211101111 10111110 0 00111 111 11234555
Q ss_pred --CcEEEEecccCC--CCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 019713 173 --AEWALLIGAKPR--GPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (337)
Q Consensus 173 --ADvVIitag~pr--k~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvt 222 (337)
+|+||.+++... .....-...+..|..-...+++.+.+. ..+..+|.+|
T Consensus 72 ~~~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~~~i~~S 124 (317)
T TIGR01181 72 HQPDAVVHFAAESHVDRSISGPAAFIETNVVGTYTLLEAVRKY-WHEFRFHHIS 124 (317)
T ss_pred cCCCEEEEcccccCchhhhhCHHHHHHHHHHHHHHHHHHHHhc-CCCceEEEee
Confidence 899998876432 111122345677888788888887775 3455666655
No 189
>PRK07806 short chain dehydrogenase; Provisional
Probab=95.63 E-value=0.14 Score=46.48 Aligned_cols=25 Identities=20% Similarity=0.127 Sum_probs=22.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
++|.|+||+|.+|.+++..|+..+.
T Consensus 7 k~vlItGasggiG~~l~~~l~~~G~ 31 (248)
T PRK07806 7 KTALVTGSSRGIGADTAKILAGAGA 31 (248)
T ss_pred cEEEEECCCCcHHHHHHHHHHHCCC
Confidence 6899999999999999999988774
No 190
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=95.60 E-value=0.11 Score=47.61 Aligned_cols=26 Identities=27% Similarity=0.308 Sum_probs=23.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.++|.|+||+|.+|.+++..|+..|.
T Consensus 7 ~~~vlItGasg~iG~~la~~l~~~G~ 32 (262)
T PRK13394 7 GKTAVVTGAASGIGKEIALELARAGA 32 (262)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC
Confidence 46899999999999999999998775
No 191
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=95.58 E-value=0.17 Score=45.77 Aligned_cols=26 Identities=23% Similarity=0.172 Sum_probs=23.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.++|.|+||+|.+|.+++..|+..|.
T Consensus 5 ~~~vlItGasg~iG~~l~~~l~~~G~ 30 (251)
T PRK07231 5 GKVAIVTGASSGIGEGIARRFAAEGA 30 (251)
T ss_pred CcEEEEECCCChHHHHHHHHHHHCCC
Confidence 35899999999999999999998774
No 192
>PLN02712 arogenate dehydrogenase
Probab=95.58 E-value=0.19 Score=53.85 Aligned_cols=27 Identities=22% Similarity=0.233 Sum_probs=22.7
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 94 KKMVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 94 ~~~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.+++||+||| .|.||..++..|...+.
T Consensus 50 ~~~~kIgIIG-~G~mG~slA~~L~~~G~ 76 (667)
T PLN02712 50 TTQLKIAIIG-FGNYGQFLAKTLISQGH 76 (667)
T ss_pred CCCCEEEEEc-cCHHHHHHHHHHHHCCC
Confidence 4457999999 59999999999987763
No 193
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=95.57 E-value=0.051 Score=56.09 Aligned_cols=103 Identities=15% Similarity=0.199 Sum_probs=57.4
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCccccc---
Q 019713 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELF--- 170 (337)
Q Consensus 94 ~~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal--- 170 (337)
..+.+|++|| .|.||..+|..|+..|. .|.+ + |++.++.+..+..... . .. ..+....+..+..
T Consensus 4 ~~~~~IG~IG-LG~MG~~mA~nL~~~G~-----~V~V--~--NRt~~k~~~l~~~~~~-~-Ga-~~~~~a~s~~e~v~~l 70 (493)
T PLN02350 4 AALSRIGLAG-LAVMGQNLALNIAEKGF-----PISV--Y--NRTTSKVDETVERAKK-E-GN-LPLYGFKDPEDFVLSI 70 (493)
T ss_pred CCCCCEEEEe-eHHHHHHHHHHHHhCCC-----eEEE--E--CCCHHHHHHHHHhhhh-c-CC-cccccCCCHHHHHhcC
Confidence 4467899999 79999999999999886 2544 2 5555565543211110 0 00 1122222233333
Q ss_pred CCCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCC
Q 019713 171 EDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (337)
Q Consensus 171 ~dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNP 224 (337)
+.+|+||++... .+.++++...+.....++.+||..||-
T Consensus 71 ~~~dvIi~~v~~---------------~~aV~~Vi~gl~~~l~~G~iiID~sT~ 109 (493)
T PLN02350 71 QKPRSVIILVKA---------------GAPVDQTIKALSEYMEPGDCIIDGGNE 109 (493)
T ss_pred CCCCEEEEECCC---------------cHHHHHHHHHHHhhcCCCCEEEECCCC
Confidence 349999987421 122333333333333567777878874
No 194
>PRK06901 aspartate-semialdehyde dehydrogenase; Provisional
Probab=95.57 E-value=0.063 Score=52.40 Aligned_cols=71 Identities=15% Similarity=0.146 Sum_probs=44.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcE
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADv 175 (337)
.++|+| ||+|.||..+...|..+++-= -.|+++.... ...|..+.+. ...+.+..-+.++|++.|+
T Consensus 3 ~~~iAi-GATg~VG~~~l~~Leer~fpv----~~l~l~~s~~---~s~gk~i~f~------g~~~~V~~l~~~~f~~vDi 68 (322)
T PRK06901 3 TLNIAI-AAEFELSEKLLEALEQSDLEI----EQISIVEIEP---FGEEQGIRFN------NKAVEQIAPEEVEWADFNY 68 (322)
T ss_pred cceEEE-ecCcHHHHHHHHHHHhcCCch----hheeeccccc---ccCCCEEEEC------CEEEEEEECCccCcccCCE
Confidence 368999 999999999999888777621 1344544320 1112111111 2345555445678999999
Q ss_pred EEEecc
Q 019713 176 ALLIGA 181 (337)
Q Consensus 176 VIitag 181 (337)
+++ +|
T Consensus 69 a~f-ag 73 (322)
T PRK06901 69 VFF-AG 73 (322)
T ss_pred EEE-cC
Confidence 999 54
No 195
>PRK07326 short chain dehydrogenase; Provisional
Probab=95.56 E-value=0.22 Score=44.89 Aligned_cols=25 Identities=16% Similarity=0.038 Sum_probs=22.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
++|.|+||+|.+|.+++..|+..+.
T Consensus 7 ~~ilItGatg~iG~~la~~l~~~g~ 31 (237)
T PRK07326 7 KVALITGGSKGIGFAIAEALLAEGY 31 (237)
T ss_pred CEEEEECCCCcHHHHHHHHHHHCCC
Confidence 6899999999999999999987664
No 196
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=95.55 E-value=0.046 Score=51.23 Aligned_cols=100 Identities=24% Similarity=0.243 Sum_probs=57.2
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCC-cEE
Q 019713 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA-EWA 176 (337)
Q Consensus 98 KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dA-DvV 176 (337)
+|.|+||+|+||++++..|...+. .|.. + ++......... .+..+. ...+.-.....+.+++. |.|
T Consensus 2 ~ILVtG~tGfiG~~l~~~L~~~g~-----~V~~--~--~r~~~~~~~~~---~~~~~~-~~d~~~~~~~~~~~~~~~d~v 68 (314)
T COG0451 2 RILVTGGAGFIGSHLVERLLAAGH-----DVRG--L--DRLRDGLDPLL---SGVEFV-VLDLTDRDLVDELAKGVPDAV 68 (314)
T ss_pred eEEEEcCcccHHHHHHHHHHhCCC-----eEEE--E--eCCCccccccc---ccccee-eecccchHHHHHHHhcCCCEE
Confidence 499999999999999999998754 2332 1 22222211110 000000 00000001122445555 999
Q ss_pred EEecccCCCCCCch---hhhHHhhHHHHHHHHHHHHh
Q 019713 177 LLIGAKPRGPGMER---AGLLDINGQIFAEQGKALNA 210 (337)
Q Consensus 177 Iitag~prk~g~~R---~dll~~N~~I~~~i~~~I~~ 210 (337)
|.+++....++..+ .+....|+.-.+.+.+...+
T Consensus 69 ih~aa~~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~ 105 (314)
T COG0451 69 IHLAAQSSVPDSNASDPAEFLDVNVDGTLNLLEAARA 105 (314)
T ss_pred EEccccCchhhhhhhCHHHHHHHHHHHHHHHHHHHHH
Confidence 98887654343322 24778899999999998887
No 197
>PRK06194 hypothetical protein; Provisional
Probab=95.52 E-value=0.19 Score=46.95 Aligned_cols=46 Identities=22% Similarity=0.116 Sum_probs=31.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHh
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~ 150 (337)
.++|.|+||+|.+|.+++..|+..|. .|.+ + +++.+.++....++.
T Consensus 6 ~k~vlVtGasggIG~~la~~l~~~G~-----~V~~--~--~r~~~~~~~~~~~~~ 51 (287)
T PRK06194 6 GKVAVITGAASGFGLAFARIGAALGM-----KLVL--A--DVQQDALDRAVAELR 51 (287)
T ss_pred CCEEEEeCCccHHHHHHHHHHHHCCC-----EEEE--E--eCChHHHHHHHHHHH
Confidence 36899999999999999999998775 2443 2 344445554444443
No 198
>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=95.50 E-value=0.048 Score=53.41 Aligned_cols=74 Identities=27% Similarity=0.303 Sum_probs=43.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHH-HhHhhhccCCcccEEEecCcccccCCCc
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVA-MELEDSLFPLLREVKIGINPYELFEDAE 174 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a-~DL~d~~~~~~~~v~i~t~~~eal~dAD 174 (337)
++||+|+||+|.||+.+...|..... .- ..+.++-+.++ .|.. .++..-.. .+.-...+..+++++|
T Consensus 1 ~~~VavvGATG~VG~~~~~~L~e~~f-~~---~~~~~~AS~rS----aG~~~~~f~~~~~----~v~~~~~~~~~~~~~D 68 (334)
T COG0136 1 KLNVAVLGATGAVGQVLLELLEERHF-PF---EELVLLASARS----AGKKYIEFGGKSI----GVPEDAADEFVFSDVD 68 (334)
T ss_pred CcEEEEEeccchHHHHHHHHHHhcCC-Cc---ceEEEEecccc----cCCccccccCccc----cCccccccccccccCC
Confidence 46999999999999999999987533 11 12333333332 1221 22221110 1111113557788999
Q ss_pred EEEEecc
Q 019713 175 WALLIGA 181 (337)
Q Consensus 175 vVIitag 181 (337)
+|++++|
T Consensus 69 ivf~~ag 75 (334)
T COG0136 69 IVFFAAG 75 (334)
T ss_pred EEEEeCc
Confidence 9999875
No 199
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=95.49 E-value=0.2 Score=45.60 Aligned_cols=46 Identities=22% Similarity=0.197 Sum_probs=31.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHh
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~ 150 (337)
.++|.|+||+|.+|.+++..|+..|. .+.+ .+++.+.++....++.
T Consensus 4 ~~~vlItG~sg~iG~~la~~l~~~g~-----~v~~----~~r~~~~~~~~~~~~~ 49 (258)
T PRK12429 4 GKVALVTGAASGIGLEIALALAKEGA-----KVVI----ADLNDEAAAAAAEALQ 49 (258)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-----eEEE----EeCCHHHHHHHHHHHH
Confidence 35899999999999999999988764 2443 2445555554444443
No 200
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=95.46 E-value=0.041 Score=55.52 Aligned_cols=105 Identities=17% Similarity=0.144 Sum_probs=60.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcE
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADv 175 (337)
..+|+|+|+ |.+|..++..|...|+. .|.+ .+++.++++..+.++.. ......+..+.+.++|+
T Consensus 180 ~~~VlViGa-G~iG~~~a~~L~~~G~~----~V~v----~~rs~~ra~~la~~~g~-------~~i~~~~l~~~l~~aDv 243 (417)
T TIGR01035 180 GKKALLIGA-GEMGELVAKHLLRKGVG----KILI----ANRTYERAEDLAKELGG-------EAVKFEDLEEYLAEADI 243 (417)
T ss_pred CCEEEEECC-hHHHHHHHHHHHHCCCC----EEEE----EeCCHHHHHHHHHHcCC-------eEeeHHHHHHHHhhCCE
Confidence 469999995 99999999999886642 2444 24555555544433321 11111234577889999
Q ss_pred EEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHH
Q 019713 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNA 229 (337)
Q Consensus 176 VIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t 229 (337)
||.+.+.|.. -. +.+.++ .+..-.....+++-+++|-|+=.
T Consensus 244 Vi~aT~s~~~-ii--------~~e~l~----~~~~~~~~~~~viDla~Prdid~ 284 (417)
T TIGR01035 244 VISSTGAPHP-IV--------SKEDVE----RALRERTRPLFIIDIAVPRDVDP 284 (417)
T ss_pred EEECCCCCCc-eE--------cHHHHH----HHHhcCCCCeEEEEeCCCCCCCh
Confidence 9988655431 01 111122 21111012458889999977643
No 201
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=95.43 E-value=0.05 Score=48.61 Aligned_cols=74 Identities=19% Similarity=0.188 Sum_probs=46.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEe--cC---ccccc
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG--IN---PYELF 170 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~--t~---~~eal 170 (337)
.++|.|+||+|.+|..++..|+..+. .+.+ + +++.++++..+.++.+.. . ..+... .+ ..+++
T Consensus 28 ~~~vlVlGgtG~iG~~~a~~l~~~g~-----~V~l--~--~R~~~~~~~l~~~l~~~~-~--~~~~~~~~~~~~~~~~~~ 95 (194)
T cd01078 28 GKTAVVLGGTGPVGQRAAVLLAREGA-----RVVL--V--GRDLERAQKAADSLRARF-G--EGVGAVETSDDAARAAAI 95 (194)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC-----EEEE--E--cCCHHHHHHHHHHHHhhc-C--CcEEEeeCCCHHHHHHHH
Confidence 46999999889999999999987652 2443 2 456666666555454211 1 122221 11 13678
Q ss_pred CCCcEEEEecc
Q 019713 171 EDAEWALLIGA 181 (337)
Q Consensus 171 ~dADvVIitag 181 (337)
+++|+||.+..
T Consensus 96 ~~~diVi~at~ 106 (194)
T cd01078 96 KGADVVFAAGA 106 (194)
T ss_pred hcCCEEEECCC
Confidence 99999888653
No 202
>PRK07454 short chain dehydrogenase; Provisional
Probab=95.43 E-value=0.25 Score=44.73 Aligned_cols=28 Identities=18% Similarity=0.216 Sum_probs=24.5
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 94 KKMVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 94 ~~~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.+++++.|+||+|.+|..++..|+..+.
T Consensus 4 ~~~k~vlItG~sg~iG~~la~~l~~~G~ 31 (241)
T PRK07454 4 NSMPRALITGASSGIGKATALAFAKAGW 31 (241)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC
Confidence 3467899999999999999999998775
No 203
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=95.43 E-value=0.18 Score=47.93 Aligned_cols=76 Identities=18% Similarity=0.168 Sum_probs=43.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCc
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dAD 174 (337)
.++||+|.||+|.||..+...+...+-+ .+.-. +++......| -|......--...+.++.+......++|
T Consensus 1 ~~iki~V~Ga~GRMG~~ii~~v~~~~~~----~L~aa---~~~~~~~~~g--~d~ge~~g~~~~gv~v~~~~~~~~~~~D 71 (266)
T COG0289 1 SMIKVAVAGASGRMGRTLIRAVLEAPDL----ELVAA---FDRPGSLSLG--SDAGELAGLGLLGVPVTDDLLLVKADAD 71 (266)
T ss_pred CCceEEEEcCCChHHHHHHHHHhcCCCc----eEEEE---EecCCccccc--cchhhhccccccCceeecchhhcccCCC
Confidence 3689999999999999999988776532 12211 2333222211 1222211111123455555567788999
Q ss_pred EEE-Ee
Q 019713 175 WAL-LI 179 (337)
Q Consensus 175 vVI-it 179 (337)
++| +|
T Consensus 72 V~IDFT 77 (266)
T COG0289 72 VLIDFT 77 (266)
T ss_pred EEEECC
Confidence 998 44
No 204
>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]
Probab=95.43 E-value=0.1 Score=49.09 Aligned_cols=115 Identities=17% Similarity=0.141 Sum_probs=75.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEec---------Ccc
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI---------NPY 167 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t---------~~~ 167 (337)
+-|.|.||++-+|.++|..|+..|. .+.| ..+..++|+.++.++.+.. .+...+.++. ...
T Consensus 7 kv~lITGASSGiG~A~A~~l~~~G~-----~vvl----~aRR~drL~~la~~~~~~~-~~~~~~DVtD~~~~~~~i~~~~ 76 (246)
T COG4221 7 KVALITGASSGIGEATARALAEAGA-----KVVL----AARREERLEALADEIGAGA-ALALALDVTDRAAVEAAIEALP 76 (246)
T ss_pred cEEEEecCcchHHHHHHHHHHHCCC-----eEEE----EeccHHHHHHHHHhhccCc-eEEEeeccCCHHHHHHHHHHHH
Confidence 4578999999999999999999887 2554 4678899999998888411 1111222321 123
Q ss_pred cccCCCcEEEEecccCCCCCC------chhhhHHhhHH----HHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 168 ELFEDAEWALLIGAKPRGPGM------ERAGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 168 eal~dADvVIitag~prk~g~------~R~dll~~N~~----I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
+.+.+.|++|..||.-+..-. +-..+++.|+. ..+.+.+.+.+- ..+-||+++-
T Consensus 77 ~~~g~iDiLvNNAGl~~g~~~~~~~~~dw~~Mid~Ni~G~l~~~~avLP~m~~r--~~G~IiN~~S 140 (246)
T COG4221 77 EEFGRIDILVNNAGLALGDPLDEADLDDWDRMIDTNVKGLLNGTRAVLPGMVER--KSGHIINLGS 140 (246)
T ss_pred HhhCcccEEEecCCCCcCChhhhCCHHHHHHHHHHHHHHHHHHHHHhhhHHHhc--CCceEEEecc
Confidence 567889999999886443111 23356778865 344555666663 4557788764
No 205
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=95.42 E-value=0.26 Score=44.62 Aligned_cols=26 Identities=19% Similarity=0.175 Sum_probs=23.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.++|.|+||+|.+|++++..|+..+.
T Consensus 3 ~~~ilItGas~~iG~~la~~l~~~g~ 28 (250)
T TIGR03206 3 DKTAIVTGGGGGIGGATCRRFAEEGA 28 (250)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC
Confidence 46899999999999999999998775
No 206
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=95.41 E-value=0.056 Score=49.54 Aligned_cols=25 Identities=12% Similarity=0.155 Sum_probs=22.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
|+|.|+||+|.+|.+++..|+..|.
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~G~ 25 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQGH 25 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCC
Confidence 5899999999999999999998764
No 207
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=95.35 E-value=0.16 Score=54.60 Aligned_cols=94 Identities=19% Similarity=0.155 Sum_probs=55.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcEE
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADvV 176 (337)
.||+||| .|.||.+++..|...+... .|.. + |++.++++. +.+. . . .....++..+++.++|+|
T Consensus 4 ~~I~IIG-~G~mG~ala~~l~~~G~~~---~V~~--~--d~~~~~~~~-a~~~---g--~--~~~~~~~~~~~~~~aDvV 67 (735)
T PRK14806 4 GRVVVIG-LGLIGGSFAKALRERGLAR---EVVA--V--DRRAKSLEL-AVSL---G--V--IDRGEEDLAEAVSGADVI 67 (735)
T ss_pred cEEEEEe-eCHHHHHHHHHHHhcCCCC---EEEE--E--ECChhHHHH-HHHC---C--C--CCcccCCHHHHhcCCCEE
Confidence 6899999 5999999999998877421 2433 2 445444432 1111 1 1 001123345668899999
Q ss_pred EEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 019713 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (337)
Q Consensus 177 Iitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvt 222 (337)
|++... ..+.++.+.+.++..++++|+.++
T Consensus 68 ilavp~----------------~~~~~vl~~l~~~~~~~~ii~d~~ 97 (735)
T PRK14806 68 VLAVPV----------------LAMEKVLADLKPLLSEHAIVTDVG 97 (735)
T ss_pred EECCCH----------------HHHHHHHHHHHHhcCCCcEEEEcC
Confidence 997521 234555556655545666655454
No 208
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=95.34 E-value=0.071 Score=52.04 Aligned_cols=74 Identities=20% Similarity=0.170 Sum_probs=49.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCc
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dAD 174 (337)
...+++||| +|.+|...+..+....-+ ..|.+ + +++.++++..+.++.+. ..++....+..+++++||
T Consensus 127 ~~~~lgiiG-~G~qA~~~l~al~~~~~~---~~v~V--~--~r~~~~~~~~~~~~~~~----g~~v~~~~~~~eav~~aD 194 (325)
T TIGR02371 127 DSSVLGIIG-AGRQAWTQLEALSRVFDL---EEVSV--Y--CRTPSTREKFALRASDY----EVPVRAATDPREAVEGCD 194 (325)
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHhcCCC---CEEEE--E--CCCHHHHHHHHHHHHhh----CCcEEEeCCHHHHhccCC
Confidence 357999999 599999866665442222 23544 3 56667777666655532 224566667789999999
Q ss_pred EEEEec
Q 019713 175 WALLIG 180 (337)
Q Consensus 175 vVIita 180 (337)
+|+.+-
T Consensus 195 iVitaT 200 (325)
T TIGR02371 195 ILVTTT 200 (325)
T ss_pred EEEEec
Confidence 998753
No 209
>TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase. This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370).
Probab=95.33 E-value=0.099 Score=49.24 Aligned_cols=109 Identities=17% Similarity=0.172 Sum_probs=59.4
Q ss_pred EEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCccc-----ccCCC
Q 019713 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYE-----LFEDA 173 (337)
Q Consensus 99 I~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~e-----al~dA 173 (337)
|.|+||+|++|++++..|...+.. .|.+ ++.......+. ++.... ....+... +..+ .+.+.
T Consensus 1 ilItGatG~iG~~l~~~L~~~g~~----~v~~--~~~~~~~~~~~----~~~~~~--~~~d~~~~-~~~~~~~~~~~~~~ 67 (314)
T TIGR02197 1 IIVTGGAGFIGSNLVKALNERGIT----DILV--VDNLRDGHKFL----NLADLV--IADYIDKE-DFLDRLEKGAFGKI 67 (314)
T ss_pred CEEeCCcchhhHHHHHHHHHcCCc----eEEE--EecCCCchhhh----hhhhee--eeccCcch-hHHHHHHhhccCCC
Confidence 579999999999999999987741 1322 22211111111 011000 00001000 0111 23589
Q ss_pred cEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 174 DvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
|+||.+++.+.....+.......|..-...+.+.+.+. . ..+|.+|.
T Consensus 68 D~vvh~A~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~-~--~~~v~~SS 114 (314)
T TIGR02197 68 EAIFHQGACSDTTETDGEYMMENNYQYSKRLLDWCAEK-G--IPFIYASS 114 (314)
T ss_pred CEEEECccccCccccchHHHHHHHHHHHHHHHHHHHHh-C--CcEEEEcc
Confidence 99999887543222233455678888888888888775 2 35666663
No 210
>PRK12937 short chain dehydrogenase; Provisional
Probab=95.33 E-value=0.056 Score=48.90 Aligned_cols=27 Identities=26% Similarity=0.195 Sum_probs=24.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
+..+|.|+||+|.+|++++..|+..+.
T Consensus 4 ~~~~vlItG~~~~iG~~la~~l~~~g~ 30 (245)
T PRK12937 4 SNKVAIVTGASRGIGAAIARRLAADGF 30 (245)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC
Confidence 446899999999999999999998875
No 211
>PRK12827 short chain dehydrogenase; Provisional
Probab=95.32 E-value=0.42 Score=43.10 Aligned_cols=26 Identities=19% Similarity=0.387 Sum_probs=23.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.++|.|+||+|.+|.+++..|+..+.
T Consensus 6 ~~~ilItGasg~iG~~la~~l~~~g~ 31 (249)
T PRK12827 6 SRRVLITGGSGGLGRAIAVRLAADGA 31 (249)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC
Confidence 46899999999999999999998775
No 212
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=95.27 E-value=0.14 Score=51.65 Aligned_cols=103 Identities=15% Similarity=0.155 Sum_probs=54.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCC-cccEEEec--CcccccCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL-LREVKIGI--NPYELFED 172 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~-~~~v~i~t--~~~eal~d 172 (337)
.++|.|+||+|.+|.+++..|+..|. .+.+ + +++.++++.. +.+..... .....++. +..+.+.+
T Consensus 178 gK~VLITGASgGIG~aLA~~La~~G~-----~Vi~--l--~r~~~~l~~~---~~~~~~~v~~v~~Dvsd~~~v~~~l~~ 245 (406)
T PRK07424 178 GKTVAVTGASGTLGQALLKELHQQGA-----KVVA--L--TSNSDKITLE---INGEDLPVKTLHWQVGQEAALAELLEK 245 (406)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-----EEEE--E--eCCHHHHHHH---HhhcCCCeEEEEeeCCCHHHHHHHhCC
Confidence 46899999999999999999998775 2433 2 3333333211 11111000 00111111 01234678
Q ss_pred CcEEEEecccCCCCCCch---hhhHHhhHH----HHHHHHHHHHh
Q 019713 173 AEWALLIGAKPRGPGMER---AGLLDINGQ----IFAEQGKALNA 210 (337)
Q Consensus 173 ADvVIitag~prk~g~~R---~dll~~N~~----I~~~i~~~I~~ 210 (337)
.|++|..+|.......+. .+.++.|.. +++.+.+.+++
T Consensus 246 IDiLInnAGi~~~~~~s~e~~~~~~~vNv~g~i~Li~a~lp~m~~ 290 (406)
T PRK07424 246 VDILIINHGINVHGERTPEAINKSYEVNTFSAWRLMELFFTTVKT 290 (406)
T ss_pred CCEEEECCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999998877543222222 233455543 45555565654
No 213
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=95.25 E-value=0.27 Score=45.11 Aligned_cols=26 Identities=12% Similarity=0.066 Sum_probs=23.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.++|.|+||+|.+|++++..|+..|.
T Consensus 12 ~k~ilItGa~g~IG~~la~~l~~~G~ 37 (259)
T PRK08213 12 GKTALVTGGSRGLGLQIAEALGEAGA 37 (259)
T ss_pred CCEEEEECCCchHHHHHHHHHHHcCC
Confidence 36899999999999999999998775
No 214
>PRK06128 oxidoreductase; Provisional
Probab=95.24 E-value=0.45 Score=45.14 Aligned_cols=116 Identities=15% Similarity=0.046 Sum_probs=61.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEE-ecC--c-------
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--P------- 166 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~t~--~------- 166 (337)
++|.|+||+|.+|.+++..|+..|. .|.+.. .+.....++....++++.. .++.. ..| +
T Consensus 56 k~vlITGas~gIG~~~a~~l~~~G~-----~V~i~~--~~~~~~~~~~~~~~~~~~~----~~~~~~~~Dl~~~~~v~~~ 124 (300)
T PRK06128 56 RKALITGADSGIGRATAIAFAREGA-----DIALNY--LPEEEQDAAEVVQLIQAEG----RKAVALPGDLKDEAFCRQL 124 (300)
T ss_pred CEEEEecCCCcHHHHHHHHHHHcCC-----EEEEEe--CCcchHHHHHHHHHHHHcC----CeEEEEecCCCCHHHHHHH
Confidence 5899999999999999999998775 244422 2222222222222233211 11111 111 1
Q ss_pred ----ccccCCCcEEEEecccC--CCCC--Cch---hhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 167 ----YELFEDAEWALLIGAKP--RGPG--MER---AGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 167 ----~eal~dADvVIitag~p--rk~g--~~R---~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
.+.+...|++|..+|.. ..+- .+. ...+..|+.-...+.+.+.++..+++.||+++.
T Consensus 125 ~~~~~~~~g~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~~sS 192 (300)
T PRK06128 125 VERAVKELGGLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPPGASIINTGS 192 (300)
T ss_pred HHHHHHHhCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCcCCEEEEECC
Confidence 12234689999988853 2221 122 234666655444455554443234456777664
No 215
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=95.23 E-value=0.062 Score=51.56 Aligned_cols=63 Identities=10% Similarity=0.116 Sum_probs=40.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcEE
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADvV 176 (337)
|||+||| .|.||..++..|...+. .+.+ +|.+ .+ .+. +.+. ......+..+..+++|+|
T Consensus 1 m~Ig~IG-lG~MG~~ma~~L~~~G~-----~v~v--~~~~--~~-~~~----~~~~------g~~~~~s~~~~~~~advV 59 (292)
T PRK15059 1 MKLGFIG-LGIMGTPMAINLARAGH-----QLHV--TTIG--PV-ADE----LLSL------GAVSVETARQVTEASDII 59 (292)
T ss_pred CeEEEEc-cCHHHHHHHHHHHHCCC-----eEEE--EeCC--Hh-HHH----HHHc------CCeecCCHHHHHhcCCEE
Confidence 4899999 59999999999998875 2443 3332 21 221 2211 112223455678899999
Q ss_pred EEec
Q 019713 177 LLIG 180 (337)
Q Consensus 177 Iita 180 (337)
|++.
T Consensus 60 i~~v 63 (292)
T PRK15059 60 FIMV 63 (292)
T ss_pred EEeC
Confidence 9874
No 216
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=95.23 E-value=0.033 Score=53.37 Aligned_cols=128 Identities=15% Similarity=0.109 Sum_probs=72.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHHc----CCCCCCCceEEEeccccc--hhhH--HHhHHHhHhhhccCCcccEEEecCccc
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAG----EVLGPDQPIALKLLGSER--SLQA--LEGVAMELEDSLFPLLREVKIGINPYE 168 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~----~l~~e~~~v~L~L~d~d~--~~~~--l~g~a~DL~d~~~~~~~~v~i~t~~~e 168 (337)
.||.|.|| |..|.+++..|... |+-.++-.-.+.++|.+- ..++ +.....++.+.. . . ....+..+
T Consensus 26 ~~iv~~GA-GsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gll~~~r~~l~~~~~~~a~~~-~---~-~~~~~L~e 99 (279)
T cd05312 26 QRILFLGA-GSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGLLTKDRKDLTPFKKPFARKD-E---E-KEGKSLLE 99 (279)
T ss_pred cEEEEECc-CHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCCeEeCCCCcchHHHHHHHhhc-C---c-ccCCCHHH
Confidence 59999995 99999999888765 552111111345555431 0111 222222222211 0 0 12245678
Q ss_pred ccC--CCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCc---hhHHHHHHHHCCCCCCCe
Q 019713 169 LFE--DAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC---NTNALICLKNAPSIPAKN 243 (337)
Q Consensus 169 al~--dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPv---d~~t~i~~k~s~~~p~kv 243 (337)
+++ ++|+.|=+.+.| | -+-+++.+.|.++ +++.+|.-.+||. +....-+++++.+ +.+
T Consensus 100 ~i~~v~ptvlIG~S~~~---g-----------~ft~evv~~Ma~~-~~~PIIFaLSNPt~~~E~~pe~a~~~t~G--~ai 162 (279)
T cd05312 100 VVKAVKPTVLIGLSGVG---G-----------AFTEEVVRAMAKS-NERPIIFALSNPTSKAECTAEDAYKWTDG--RAL 162 (279)
T ss_pred HHHhcCCCEEEEeCCCC---C-----------CCCHHHHHHHHhc-CCCCEEEECCCcCCccccCHHHHHHhhcC--CEE
Confidence 899 899988654432 2 1225677778877 6888999999996 4455555565421 135
Q ss_pred EEec
Q 019713 244 FHAL 247 (337)
Q Consensus 244 IG~g 247 (337)
|++|
T Consensus 163 ~ATG 166 (279)
T cd05312 163 FASG 166 (279)
T ss_pred EEeC
Confidence 5555
No 217
>PRK06180 short chain dehydrogenase; Provisional
Probab=95.22 E-value=0.1 Score=48.82 Aligned_cols=26 Identities=15% Similarity=0.104 Sum_probs=23.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
+++|.|+||+|.||.+++..|+..|.
T Consensus 4 ~~~vlVtGasggiG~~la~~l~~~G~ 29 (277)
T PRK06180 4 MKTWLITGVSSGFGRALAQAALAAGH 29 (277)
T ss_pred CCEEEEecCCChHHHHHHHHHHhCcC
Confidence 46799999999999999999988764
No 218
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=95.22 E-value=0.35 Score=43.33 Aligned_cols=27 Identities=22% Similarity=0.192 Sum_probs=24.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
++++|.|+||+|.+|..++..|+..+.
T Consensus 5 ~~~~vlItGasg~iG~~l~~~l~~~g~ 31 (249)
T PRK12825 5 MGRVALVTGAARGLGRAIALRLARAGA 31 (249)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC
Confidence 346899999999999999999998776
No 219
>PRK07069 short chain dehydrogenase; Validated
Probab=95.21 E-value=0.34 Score=43.93 Aligned_cols=115 Identities=12% Similarity=0.076 Sum_probs=61.7
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccch-hhHHHhHHHhHhhhccCCc---ccEEEecC--------
Q 019713 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERS-LQALEGVAMELEDSLFPLL---REVKIGIN-------- 165 (337)
Q Consensus 98 KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~-~~~l~g~a~DL~d~~~~~~---~~v~i~t~-------- 165 (337)
||.|+||+|.+|.+++..|+..|. .|.+ ++ ++ .+.++....++.+...... ....++..
T Consensus 1 ~ilVtG~~~~iG~~~a~~l~~~G~-----~v~~--~~--r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 71 (251)
T PRK07069 1 RAFITGAAGGLGRAIARRMAEQGA-----KVFL--TD--INDAAGLDAFAAEINAAHGEGVAFAAVQDVTDEAQWQALLA 71 (251)
T ss_pred CEEEECCCChHHHHHHHHHHHCCC-----EEEE--Ee--CCcchHHHHHHHHHHhcCCCceEEEEEeecCCHHHHHHHHH
Confidence 589999999999999999998774 2443 22 22 3444444333432210000 01111110
Q ss_pred -cccccCCCcEEEEecccCCCCC---Cc---hhhhHHhhHH----HHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 166 -PYELFEDAEWALLIGAKPRGPG---ME---RAGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 166 -~~eal~dADvVIitag~prk~g---~~---R~dll~~N~~----I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
-.+.+...|+||..+|...... .+ -...+..|.. ..+.+.+.+++. +.+.||+++.
T Consensus 72 ~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~--~~~~ii~~ss 138 (251)
T PRK07069 72 QAADAMGGLSVLVNNAGVGSFGAIEQIELDEWRRVMAINVESIFLGCKHALPYLRAS--QPASIVNISS 138 (251)
T ss_pred HHHHHcCCccEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhc--CCcEEEEecC
Confidence 0122456899999887543211 11 1234556655 566677777664 3346666664
No 220
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=95.21 E-value=0.075 Score=52.23 Aligned_cols=70 Identities=29% Similarity=0.398 Sum_probs=41.7
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcEEE
Q 019713 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWAL 177 (337)
Q Consensus 98 KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADvVI 177 (337)
||+|+||+|.+|..++..|...+.- .+.|..+..+.+ .|....+. ...+.+..-+.++++++|+|+
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp----~~~l~~~as~~~----~g~~~~~~------~~~~~~~~~~~~~~~~~D~v~ 66 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFP----IDKLVLLASDRS----AGRKVTFK------GKELEVNEAKIESFEGIDIAL 66 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCC----hhhEEEEecccc----CCCeeeeC------CeeEEEEeCChHHhcCCCEEE
Confidence 6999999999999999998875431 234443322221 11111111 112333322346689999999
Q ss_pred Eecc
Q 019713 178 LIGA 181 (337)
Q Consensus 178 itag 181 (337)
++.|
T Consensus 67 ~a~g 70 (339)
T TIGR01296 67 FSAG 70 (339)
T ss_pred ECCC
Confidence 9764
No 221
>PRK08339 short chain dehydrogenase; Provisional
Probab=95.18 E-value=0.5 Score=43.91 Aligned_cols=113 Identities=12% Similarity=0.040 Sum_probs=62.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEE-ec--Cccc-----
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GI--NPYE----- 168 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~t--~~~e----- 168 (337)
+.+.|+||+|.||.+++..|+..|. .|.+. +++.+.++..+.++.+.. . .++.. .. .+.+
T Consensus 9 k~~lItGas~gIG~aia~~l~~~G~-----~V~~~----~r~~~~~~~~~~~~~~~~-~--~~~~~~~~Dv~~~~~i~~~ 76 (263)
T PRK08339 9 KLAFTTASSKGIGFGVARVLARAGA-----DVILL----SRNEENLKKAREKIKSES-N--VDVSYIVADLTKREDLERT 76 (263)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHCCC-----EEEEE----eCCHHHHHHHHHHHHhhc-C--CceEEEEecCCCHHHHHHH
Confidence 4689999999999999999998875 25442 344455554444443221 1 11111 00 1111
Q ss_pred -----ccCCCcEEEEecccCCCCC---Cchh---hhHHhh----HHHHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 169 -----LFEDAEWALLIGAKPRGPG---MERA---GLLDIN----GQIFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 169 -----al~dADvVIitag~prk~g---~~R~---dll~~N----~~I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
.+...|++|..+|.+.... .+.. ..+..| ..+.+.+.+.+.+. ..+.||+++-
T Consensus 77 ~~~~~~~g~iD~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~m~~~--~~g~Ii~isS 144 (263)
T PRK08339 77 VKELKNIGEPDIFFFSTGGPKPGYFMEMSMEDWEGAVKLLLYPAVYLTRALVPAMERK--GFGRIIYSTS 144 (263)
T ss_pred HHHHHhhCCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc--CCCEEEEEcC
Confidence 1245799998887653211 1221 223344 44566677777663 3456777764
No 222
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=95.13 E-value=0.31 Score=45.17 Aligned_cols=104 Identities=20% Similarity=0.225 Sum_probs=56.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccch--hhH---HHhHHHhHhhhccCCcccEEEecCccccc
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERS--LQA---LEGVAMELEDSLFPLLREVKIGINPYELF 170 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~--~~~---l~g~a~DL~d~~~~~~~~v~i~t~~~eal 170 (337)
..||.|+|| |.+|..++..|...|+-. ..+. ++|.+.. .++ +.....++.+.. .. ... ..+..+++
T Consensus 25 ~~rvlvlGA-GgAg~aiA~~L~~~G~~~--~~i~--ivdr~gl~~~~r~~~L~~~~~~la~~~-~~-~~~--~~~l~~~l 95 (226)
T cd05311 25 EVKIVINGA-GAAGIAIARLLLAAGAKP--ENIV--VVDSKGVIYEGREDDLNPDKNEIAKET-NP-EKT--GGTLKEAL 95 (226)
T ss_pred CCEEEEECc-hHHHHHHHHHHHHcCcCc--ceEE--EEeCCCccccccchhhhHHHHHHHHHh-cc-Ccc--cCCHHHHH
Confidence 369999995 999999999998877631 0243 4444310 122 222222232211 00 011 12344788
Q ss_pred CCCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchh
Q 019713 171 EDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNT 227 (337)
Q Consensus 171 ~dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~ 227 (337)
+++|++|-+-+ +|+-. .+..+.+. ++.+|+.++||...
T Consensus 96 ~~~dvlIgaT~----~G~~~-----------~~~l~~m~----~~~ivf~lsnP~~e 133 (226)
T cd05311 96 KGADVFIGVSR----PGVVK-----------KEMIKKMA----KDPIVFALANPVPE 133 (226)
T ss_pred hcCCEEEeCCC----CCCCC-----------HHHHHhhC----CCCEEEEeCCCCCc
Confidence 99999887653 34411 12333332 45566778899743
No 223
>KOG1430 consensus C-3 sterol dehydrogenase/3-beta-hydroxysteroid dehydrogenase and related dehydrogenases [Lipid transport and metabolism; Amino acid transport and metabolism]
Probab=95.12 E-value=0.068 Score=53.04 Aligned_cols=106 Identities=16% Similarity=0.197 Sum_probs=60.7
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEE-------ecCc
Q 019713 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-------GINP 166 (337)
Q Consensus 94 ~~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i-------~t~~ 166 (337)
.++.++.|+||+|++|.+++..|...+.. ..++++|..........+-.++ ....++. ....
T Consensus 2 ~~~~~vlVtGG~GflG~hlv~~L~~~~~~-----~~irv~D~~~~~~~~~~e~~~~------~~~~v~~~~~D~~~~~~i 70 (361)
T KOG1430|consen 2 EKKLSVLVTGGSGFLGQHLVQALLENELK-----LEIRVVDKTPTQSNLPAELTGF------RSGRVTVILGDLLDANSI 70 (361)
T ss_pred CcCCEEEEECCccHHHHHHHHHHHhcccc-----cEEEEeccCccccccchhhhcc------cCCceeEEecchhhhhhh
Confidence 45679999999999999999999988752 3455555543222222221111 0112221 1234
Q ss_pred ccccCCCcEEEEecc--cCCCCCCchhhhHHhhHHHHHHHHHHHHhh
Q 019713 167 YELFEDAEWALLIGA--KPRGPGMERAGLLDINGQIFAEQGKALNAV 211 (337)
Q Consensus 167 ~eal~dADvVIitag--~prk~g~~R~dll~~N~~I~~~i~~~I~~~ 211 (337)
..++.++ .|+..+. .|+..-..|......|+.--+.+.+.+.+.
T Consensus 71 ~~a~~~~-~Vvh~aa~~~~~~~~~~~~~~~~vNV~gT~nvi~~c~~~ 116 (361)
T KOG1430|consen 71 SNAFQGA-VVVHCAASPVPDFVENDRDLAMRVNVNGTLNVIEACKEL 116 (361)
T ss_pred hhhccCc-eEEEeccccCccccccchhhheeecchhHHHHHHHHHHh
Confidence 5789999 5655433 333222235555556666656666666664
No 224
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=95.09 E-value=0.14 Score=48.87 Aligned_cols=86 Identities=19% Similarity=0.151 Sum_probs=51.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCccccc--CCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELF--EDA 173 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal--~dA 173 (337)
.+||+|||. |.||..++..|..+... .+.|.-+ .++..++.+..+ +. ..+.+ +.++| .+.
T Consensus 2 ~~rvgiIG~-GaIG~~va~~l~~~~~~----~~~l~~V-~~~~~~~~~~~~----~~-------~~~~~-~l~~ll~~~~ 63 (267)
T PRK13301 2 THRIAFIGL-GAIASDVAAGLLADAAQ----PCQLAAL-TRNAADLPPALA----GR-------VALLD-GLPGLLAWRP 63 (267)
T ss_pred ceEEEEECc-cHHHHHHHHHHhcCCCC----ceEEEEE-ecCCHHHHHHhh----cc-------CcccC-CHHHHhhcCC
Confidence 469999995 99999999998765432 2333332 344444444322 11 11222 33443 789
Q ss_pred cEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCe
Q 019713 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNV 216 (337)
Q Consensus 174 DvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~a 216 (337)
|+||.+++ .+.+++++..+-+. +.|.
T Consensus 64 DlVVE~A~----------------~~av~e~~~~iL~~-g~dl 89 (267)
T PRK13301 64 DLVVEAAG----------------QQAIAEHAEGCLTA-GLDM 89 (267)
T ss_pred CEEEECCC----------------HHHHHHHHHHHHhc-CCCE
Confidence 99999885 35667777666553 3443
No 225
>PRK05650 short chain dehydrogenase; Provisional
Probab=95.08 E-value=0.44 Score=44.12 Aligned_cols=25 Identities=16% Similarity=0.260 Sum_probs=22.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
++|.|+||+|.+|.+++..|+..|.
T Consensus 1 ~~vlVtGasggIG~~la~~l~~~g~ 25 (270)
T PRK05650 1 NRVMITGAASGLGRAIALRWAREGW 25 (270)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCC
Confidence 3789999999999999999998775
No 226
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=95.07 E-value=0.13 Score=50.61 Aligned_cols=67 Identities=15% Similarity=0.059 Sum_probs=41.2
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCC
Q 019713 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (337)
Q Consensus 94 ~~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dA 173 (337)
.+.+||+||| .|.+|.++|..|...++ .+.+.+ . ...+....+. . . . +.. .+..+++++|
T Consensus 15 L~gktIgIIG-~GsmG~AlA~~L~~sG~-----~Vvv~~--r--~~~~s~~~A~---~-~-G----~~~-~s~~eaa~~A 74 (330)
T PRK05479 15 IKGKKVAIIG-YGSQGHAHALNLRDSGV-----DVVVGL--R--EGSKSWKKAE---A-D-G----FEV-LTVAEAAKWA 74 (330)
T ss_pred hCCCEEEEEe-eHHHHHHHHHHHHHCCC-----EEEEEE--C--CchhhHHHHH---H-C-C----Cee-CCHHHHHhcC
Confidence 3457899999 59999999999988775 243321 1 1111111111 1 1 1 122 2456889999
Q ss_pred cEEEEec
Q 019713 174 EWALLIG 180 (337)
Q Consensus 174 DvVIita 180 (337)
|+|+++.
T Consensus 75 DVVvLaV 81 (330)
T PRK05479 75 DVIMILL 81 (330)
T ss_pred CEEEEcC
Confidence 9999975
No 227
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=95.07 E-value=0.055 Score=55.49 Aligned_cols=101 Identities=15% Similarity=0.185 Sum_probs=57.7
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcc---cccCCCc
Q 019713 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPY---ELFEDAE 174 (337)
Q Consensus 98 KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~---eal~dAD 174 (337)
+|+||| .|.||.++|..|+..+. .|.+ + |++.++++....+.... ..+....+.. +.++++|
T Consensus 1 ~IG~IG-LG~MG~~mA~nL~~~G~-----~V~v--~--drt~~~~~~l~~~~~~g-----~~~~~~~s~~e~v~~l~~~d 65 (467)
T TIGR00873 1 DIGVIG-LAVMGSNLALNMADHGF-----TVSV--Y--NRTPEKTDEFLAEHAKG-----KKIVGAYSIEEFVQSLERPR 65 (467)
T ss_pred CEEEEe-eHHHHHHHHHHHHhcCC-----eEEE--E--eCCHHHHHHHHhhccCC-----CCceecCCHHHHHhhcCCCC
Confidence 489999 69999999999999885 2544 2 55666655432210000 0122222222 2446789
Q ss_pred EEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC--CchhH
Q 019713 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN--PCNTN 228 (337)
Q Consensus 175 vVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtN--Pvd~~ 228 (337)
+|+++.- ++ +.+.++.+.|..+..++.+||-.+| |-++.
T Consensus 66 vIil~v~----~~-----------~~v~~Vi~~l~~~L~~g~iIID~gns~~~~t~ 106 (467)
T TIGR00873 66 KIMLMVK----AG-----------APVDAVINQLLPLLEKGDIIIDGGNSHYPDTE 106 (467)
T ss_pred EEEEECC----Cc-----------HHHHHHHHHHHhhCCCCCEEEECCCcCHHHHH
Confidence 8888741 11 2334444455554456778888887 45543
No 228
>PRK07774 short chain dehydrogenase; Provisional
Probab=95.07 E-value=0.29 Score=44.41 Aligned_cols=26 Identities=31% Similarity=0.183 Sum_probs=23.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.++|.|+||+|.+|.+++..|+..+.
T Consensus 6 ~k~vlItGasg~iG~~la~~l~~~g~ 31 (250)
T PRK07774 6 DKVAIVTGAAGGIGQAYAEALAREGA 31 (250)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC
Confidence 36899999999999999999998764
No 229
>PRK07201 short chain dehydrogenase; Provisional
Probab=95.07 E-value=0.24 Score=52.05 Aligned_cols=112 Identities=15% Similarity=0.113 Sum_probs=59.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEec-C----------
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI-N---------- 165 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t-~---------- 165 (337)
|||.|+||+|++|++++..|+...- + ..|.. ++.+...+.++.......+ .+++... |
T Consensus 1 m~ILVTGatGfIG~~lv~~Ll~~~~-g--~~V~~--l~R~~~~~~~~~~~~~~~~------~~v~~~~~Dl~~~~~~~~~ 69 (657)
T PRK07201 1 MRYFVTGGTGFIGRRLVSRLLDRRR-E--ATVHV--LVRRQSLSRLEALAAYWGA------DRVVPLVGDLTEPGLGLSE 69 (657)
T ss_pred CeEEEeCCccHHHHHHHHHHHhcCC-C--CEEEE--EECcchHHHHHHHHHhcCC------CcEEEEecccCCccCCcCH
Confidence 4899999999999999999984221 1 12432 2222222222221110000 1122111 1
Q ss_pred -cccccCCCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 019713 166 -PYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (337)
Q Consensus 166 -~~eal~dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvt 222 (337)
..+.++++|+||.+++... ......+....|+.-...+.+.+.+. ... .++.+|
T Consensus 70 ~~~~~l~~~D~Vih~Aa~~~-~~~~~~~~~~~nv~gt~~ll~~a~~~-~~~-~~v~~S 124 (657)
T PRK07201 70 ADIAELGDIDHVVHLAAIYD-LTADEEAQRAANVDGTRNVVELAERL-QAA-TFHHVS 124 (657)
T ss_pred HHHHHhcCCCEEEECceeec-CCCCHHHHHHHHhHHHHHHHHHHHhc-CCC-eEEEEe
Confidence 1223478999998887432 12233445667777777777777764 222 445444
No 230
>PRK08265 short chain dehydrogenase; Provisional
Probab=95.05 E-value=0.082 Score=48.93 Aligned_cols=25 Identities=24% Similarity=0.232 Sum_probs=23.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
+++.|+||+|.+|.+++..|+..|.
T Consensus 7 k~vlItGas~gIG~~ia~~l~~~G~ 31 (261)
T PRK08265 7 KVAIVTGGATLIGAAVARALVAAGA 31 (261)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCC
Confidence 5899999999999999999998775
No 231
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=95.04 E-value=0.24 Score=52.62 Aligned_cols=97 Identities=9% Similarity=0.018 Sum_probs=58.1
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCC
Q 019713 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (337)
Q Consensus 94 ~~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dA 173 (337)
.+.|||.|+||+|++|++++..|...+. .+....-++. +.+.+. .++. . .+.
T Consensus 378 ~~~mkiLVtGa~G~iG~~l~~~L~~~g~-----~v~~~~~~l~-d~~~v~---~~i~------------------~-~~p 429 (668)
T PLN02260 378 KPSLKFLIYGRTGWIGGLLGKLCEKQGI-----AYEYGKGRLE-DRSSLL---ADIR------------------N-VKP 429 (668)
T ss_pred CCCceEEEECCCchHHHHHHHHHHhCCC-----eEEeeccccc-cHHHHH---HHHH------------------h-hCC
Confidence 3457999999999999999999987663 1322111110 111111 0011 0 257
Q ss_pred cEEEEecccCCCCCC-----chhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEe
Q 019713 174 EWALLIGAKPRGPGM-----ERAGLLDINGQIFAEQGKALNAVASRNVKVIVV 221 (337)
Q Consensus 174 DvVIitag~prk~g~-----~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvv 221 (337)
|+||-+|+....+.. +..+....|+.....+++..++. +++++++
T Consensus 430 d~Vih~Aa~~~~~~~~~~~~~~~~~~~~N~~gt~~l~~a~~~~---g~~~v~~ 479 (668)
T PLN02260 430 THVFNAAGVTGRPNVDWCESHKVETIRANVVGTLTLADVCREN---GLLMMNF 479 (668)
T ss_pred CEEEECCcccCCCCCChHHhCHHHHHHHHhHHHHHHHHHHHHc---CCeEEEE
Confidence 999988875422211 33456778988888999988885 2344454
No 232
>PRK08643 acetoin reductase; Validated
Probab=95.04 E-value=0.35 Score=44.22 Aligned_cols=25 Identities=20% Similarity=0.123 Sum_probs=22.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
+++.|+||+|.+|.+++..|+..+.
T Consensus 3 k~~lItGas~giG~~la~~l~~~G~ 27 (256)
T PRK08643 3 KVALVTGAGQGIGFAIAKRLVEDGF 27 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCC
Confidence 4789999999999999999998774
No 233
>PRK08291 ectoine utilization protein EutC; Validated
Probab=95.03 E-value=0.1 Score=51.01 Aligned_cols=74 Identities=22% Similarity=0.158 Sum_probs=49.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHH-cCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCC
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAA-GEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~-~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dA 173 (337)
...+|+|||+ |..|...+..+.. .++ . .|.++ +++.++++..+.++++.. ..++....+..+++.+|
T Consensus 131 ~~~~v~IiGa-G~~a~~~~~al~~~~~~-~---~V~v~----~R~~~~a~~l~~~~~~~~---g~~v~~~~d~~~al~~a 198 (330)
T PRK08291 131 DASRAAVIGA-GEQARLQLEALTLVRPI-R---EVRVW----ARDAAKAEAYAADLRAEL---GIPVTVARDVHEAVAGA 198 (330)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhcCCC-C---EEEEE----cCCHHHHHHHHHHHhhcc---CceEEEeCCHHHHHccC
Confidence 3469999995 9999987777764 332 2 25542 567778777766665321 12344555556889999
Q ss_pred cEEEEec
Q 019713 174 EWALLIG 180 (337)
Q Consensus 174 DvVIita 180 (337)
|+|+.+-
T Consensus 199 DiVi~aT 205 (330)
T PRK08291 199 DIIVTTT 205 (330)
T ss_pred CEEEEee
Confidence 9998764
No 234
>PLN02686 cinnamoyl-CoA reductase
Probab=95.03 E-value=0.092 Score=51.71 Aligned_cols=118 Identities=11% Similarity=0.092 Sum_probs=61.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhc-cC-CcccEE-----Eec--C
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSL-FP-LLREVK-----IGI--N 165 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~-~~-~~~~v~-----i~t--~ 165 (337)
++++|.|+||+|++|++++..|+..|. .|.+. .+ +.+.++.. .++.... .. ....+. ++. .
T Consensus 52 ~~k~VLVTGatGfIG~~lv~~L~~~G~-----~V~~~-~r---~~~~~~~l-~~l~~~~~~~~~~~~~~~v~~Dl~d~~~ 121 (367)
T PLN02686 52 EARLVCVTGGVSFLGLAIVDRLLRHGY-----SVRIA-VD---TQEDKEKL-REMEMFGEMGRSNDGIWTVMANLTEPES 121 (367)
T ss_pred CCCEEEEECCchHHHHHHHHHHHHCCC-----EEEEE-eC---CHHHHHHH-HHHhhhccccccCCceEEEEcCCCCHHH
Confidence 356899999999999999999998775 24332 11 22222211 1121100 00 000111 111 1
Q ss_pred cccccCCCcEEEEecccCCCCCC--chhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 166 PYELFEDAEWALLIGAKPRGPGM--ERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 166 ~~eal~dADvVIitag~prk~g~--~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
..++++++|.|+-+++.....+. ....+...|..-...+.+.+.+.++-. ++|.++-
T Consensus 122 l~~~i~~~d~V~hlA~~~~~~~~~~~~~~~~~~nv~gt~~llea~~~~~~v~-r~V~~SS 180 (367)
T PLN02686 122 LHEAFDGCAGVFHTSAFVDPAGLSGYTKSMAELEAKASENVIEACVRTESVR-KCVFTSS 180 (367)
T ss_pred HHHHHHhccEEEecCeeecccccccccchhhhhhHHHHHHHHHHHHhcCCcc-EEEEecc
Confidence 13457889999877664221221 122345567777777777776641122 4555543
No 235
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=95.03 E-value=0.14 Score=50.50 Aligned_cols=26 Identities=23% Similarity=0.410 Sum_probs=22.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
++||+|+||+|.+|..++..|.....
T Consensus 3 ~~~V~I~GatG~iG~~l~~~L~~~p~ 28 (349)
T PRK08664 3 KLKVGILGATGMVGQRFVQLLANHPW 28 (349)
T ss_pred CcEEEEECCCCHHHHHHHHHHHcCCC
Confidence 47999999999999999998886443
No 236
>PRK07832 short chain dehydrogenase; Provisional
Probab=95.02 E-value=0.57 Score=43.49 Aligned_cols=25 Identities=32% Similarity=0.291 Sum_probs=22.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
+++.|+||+|.+|..++..|+..|.
T Consensus 1 k~vlItGas~giG~~la~~la~~G~ 25 (272)
T PRK07832 1 KRCFVTGAASGIGRATALRLAAQGA 25 (272)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC
Confidence 3799999999999999999998774
No 237
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=94.99 E-value=0.19 Score=45.15 Aligned_cols=26 Identities=27% Similarity=0.287 Sum_probs=23.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.++|.|+||+|.+|..++..|+..|.
T Consensus 5 ~~~ilItGasg~iG~~l~~~l~~~g~ 30 (246)
T PRK05653 5 GKTALVTGASRGIGRAIALRLAADGA 30 (246)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC
Confidence 36899999999999999999998775
No 238
>TIGR01472 gmd GDP-mannose 4,6-dehydratase. Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).
Probab=94.98 E-value=0.095 Score=50.61 Aligned_cols=25 Identities=16% Similarity=0.014 Sum_probs=22.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
+||.|+||+|+||++++..|+..|.
T Consensus 1 ~~vlVTGatGfIG~~l~~~L~~~G~ 25 (343)
T TIGR01472 1 KIALITGITGQDGSYLAEFLLEKGY 25 (343)
T ss_pred CeEEEEcCCCcHHHHHHHHHHHCCC
Confidence 4899999999999999999998764
No 239
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=94.97 E-value=0.19 Score=45.54 Aligned_cols=25 Identities=24% Similarity=0.320 Sum_probs=22.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
..||.|+|+ |.+|+.++..|+..|+
T Consensus 21 ~~~VlviG~-GglGs~ia~~La~~Gv 45 (202)
T TIGR02356 21 NSHVLIIGA-GGLGSPAALYLAGAGV 45 (202)
T ss_pred CCCEEEECC-CHHHHHHHHHHHHcCC
Confidence 369999995 9999999999999987
No 240
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=94.93 E-value=0.028 Score=51.99 Aligned_cols=68 Identities=21% Similarity=0.247 Sum_probs=41.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEec-Cc-----cccc
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI-NP-----YELF 170 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t-~~-----~eal 170 (337)
|+|+|+|+ |.+|+++|..|...|. .+.+ +|.++++++...-|-.+ ..+.... .+ ...+
T Consensus 1 m~iiIiG~-G~vG~~va~~L~~~g~-----~Vv~----Id~d~~~~~~~~~~~~~------~~~v~gd~t~~~~L~~agi 64 (225)
T COG0569 1 MKIIIIGA-GRVGRSVARELSEEGH-----NVVL----IDRDEERVEEFLADELD------THVVIGDATDEDVLEEAGI 64 (225)
T ss_pred CEEEEECC-cHHHHHHHHHHHhCCC-----ceEE----EEcCHHHHHHHhhhhcc------eEEEEecCCCHHHHHhcCC
Confidence 68999995 9999999999998875 2554 35555555432211111 1222221 11 2347
Q ss_pred CCCcEEEEec
Q 019713 171 EDAEWALLIG 180 (337)
Q Consensus 171 ~dADvVIita 180 (337)
.++|.+|.+-
T Consensus 65 ~~aD~vva~t 74 (225)
T COG0569 65 DDADAVVAAT 74 (225)
T ss_pred CcCCEEEEee
Confidence 8899988753
No 241
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=94.93 E-value=0.26 Score=49.42 Aligned_cols=76 Identities=13% Similarity=0.243 Sum_probs=48.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHH--------HhHh----hhccCCcccEEEe
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVA--------MELE----DSLFPLLREVKIG 163 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a--------~DL~----d~~~~~~~~v~i~ 163 (337)
.++|+||| .|.||--+|-.++..|.- + + +.|.++.+.+.+- -|+. ... -..+++.+
T Consensus 9 ~~~I~ViG-LGYVGLPlA~~fA~~G~~-----V-i---G~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v--~~g~lraT 76 (436)
T COG0677 9 SATIGVIG-LGYVGLPLAAAFASAGFK-----V-I---GVDINQKKVDKLNRGESYIEEPDLDEVVKEAV--ESGKLRAT 76 (436)
T ss_pred ceEEEEEc-cccccHHHHHHHHHcCCc-----e-E---eEeCCHHHHHHHhCCcceeecCcHHHHHHHHH--hcCCceEe
Confidence 37999999 799999999999998861 2 1 2344444433210 0011 111 11356666
Q ss_pred cCcccccCCCcEEEEecccCC
Q 019713 164 INPYELFEDAEWALLIGAKPR 184 (337)
Q Consensus 164 t~~~eal~dADvVIitag~pr 184 (337)
+ +.+.++.||++|++.-.|-
T Consensus 77 t-d~~~l~~~dv~iI~VPTPl 96 (436)
T COG0677 77 T-DPEELKECDVFIICVPTPL 96 (436)
T ss_pred c-ChhhcccCCEEEEEecCCc
Confidence 5 5678899999999976664
No 242
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=94.92 E-value=0.1 Score=50.46 Aligned_cols=103 Identities=17% Similarity=0.319 Sum_probs=66.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcE
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADv 175 (337)
..+|+.|| .|.+|++++..|+..|. .|..+ |++.++.+ ++++.. .++...+.|..+++|+
T Consensus 35 ~~~iGFIG-LG~MG~~M~~nLik~G~-----kVtV~----dr~~~k~~----~f~~~G------a~v~~sPaeVae~sDv 94 (327)
T KOG0409|consen 35 KTRIGFIG-LGNMGSAMVSNLIKAGY-----KVTVY----DRTKDKCK----EFQEAG------ARVANSPAEVAEDSDV 94 (327)
T ss_pred cceeeEEe-eccchHHHHHHHHHcCC-----EEEEE----eCcHHHHH----HHHHhc------hhhhCCHHHHHhhcCE
Confidence 46999999 79999999999999887 36553 34444443 344432 1233456788999999
Q ss_pred EEEecccCC----------------CCCCch-hhhHHhhHHHHHHHHHHHHhhcCCCeEEEEe
Q 019713 176 ALLIGAKPR----------------GPGMER-AGLLDINGQIFAEQGKALNAVASRNVKVIVV 221 (337)
Q Consensus 176 VIitag~pr----------------k~g~~R-~dll~~N~~I~~~i~~~I~~~a~p~aivIvv 221 (337)
||...+.|. .+|..- .|.-...-...+++.+.+.. .++++|=+
T Consensus 95 vitmv~~~~~v~~v~~g~~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~---~~~~~vDA 154 (327)
T KOG0409|consen 95 VITMVPNPKDVKDVLLGKSGVLSGIRPGKKATVDMSTIDPDTSLEIAKAISN---KGGRFVDA 154 (327)
T ss_pred EEEEcCChHhhHHHhcCCCcceeeccCCCceEEeccccCHHHHHHHHHHHHh---CCCeEEec
Confidence 998754432 122222 34444556678888888876 35665433
No 243
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=94.92 E-value=0.14 Score=46.67 Aligned_cols=26 Identities=15% Similarity=0.207 Sum_probs=22.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
+.+||.|||| |.||...+..|...+.
T Consensus 9 ~~k~vLVIGg-G~va~~ka~~Ll~~ga 34 (202)
T PRK06718 9 SNKRVVIVGG-GKVAGRRAITLLKYGA 34 (202)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCC
Confidence 3469999996 9999999999888773
No 244
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=94.92 E-value=0.11 Score=47.89 Aligned_cols=25 Identities=32% Similarity=0.284 Sum_probs=22.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
..||.|+|+ |.+|+.++..|+..|+
T Consensus 21 ~~~VlivG~-GglGs~va~~La~~Gv 45 (228)
T cd00757 21 NARVLVVGA-GGLGSPAAEYLAAAGV 45 (228)
T ss_pred CCcEEEECC-CHHHHHHHHHHHHcCC
Confidence 369999995 9999999999999997
No 245
>PRK06181 short chain dehydrogenase; Provisional
Probab=94.91 E-value=0.47 Score=43.56 Aligned_cols=25 Identities=24% Similarity=0.321 Sum_probs=22.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
++|.|+||+|.+|.+++..|+..+.
T Consensus 2 ~~vlVtGasg~iG~~la~~l~~~g~ 26 (263)
T PRK06181 2 KVVIITGASEGIGRALAVRLARAGA 26 (263)
T ss_pred CEEEEecCCcHHHHHHHHHHHHCCC
Confidence 5799999999999999999988774
No 246
>PRK10084 dTDP-glucose 4,6 dehydratase; Provisional
Probab=94.89 E-value=0.11 Score=50.24 Aligned_cols=107 Identities=15% Similarity=0.131 Sum_probs=55.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCC-cccEEEec--CcccccC--
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL-LREVKIGI--NPYELFE-- 171 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~-~~~v~i~t--~~~eal~-- 171 (337)
|||.|+||+|+||++++..|+..+.. .+. .++........+.. .++.... .. .....++. +..++++
T Consensus 1 mkilITGgtG~iG~~l~~~L~~~g~~----~v~--~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~Dl~d~~~~~~~~~~~ 72 (352)
T PRK10084 1 MKILVTGGAGFIGSAVVRHIINNTQD----SVV--NVDKLTYAGNLESL-ADVSDSE-RYVFEHADICDRAELDRIFAQH 72 (352)
T ss_pred CeEEEECCCcHHhHHHHHHHHHhCCC----eEE--EecCCCccchHHHH-HhcccCC-ceEEEEecCCCHHHHHHHHHhc
Confidence 58999999999999999999886641 122 12210000111100 0111000 00 00011111 1123343
Q ss_pred CCcEEEEecccCCC--CCCchhhhHHhhHHHHHHHHHHHHhh
Q 019713 172 DAEWALLIGAKPRG--PGMERAGLLDINGQIFAEQGKALNAV 211 (337)
Q Consensus 172 dADvVIitag~prk--~g~~R~dll~~N~~I~~~i~~~I~~~ 211 (337)
+.|+||.+++.... ......+....|+.-...+.+.+.++
T Consensus 73 ~~d~vih~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~ 114 (352)
T PRK10084 73 QPDAVMHLAAESHVDRSITGPAAFIETNIVGTYVLLEAARNY 114 (352)
T ss_pred CCCEEEECCcccCCcchhcCchhhhhhhhHHHHHHHHHHHHh
Confidence 47999998875421 11223456788888888888777653
No 247
>PRK07478 short chain dehydrogenase; Provisional
Probab=94.89 E-value=0.52 Score=43.08 Aligned_cols=112 Identities=18% Similarity=0.074 Sum_probs=62.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEE-ecC--cc------
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PY------ 167 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~t~--~~------ 167 (337)
+++.|+||+|.+|.+++..|+..|. .|.+ . +++.+.++....++.+.. .++.. ..| +.
T Consensus 7 k~~lItGas~giG~~ia~~l~~~G~-----~v~~--~--~r~~~~~~~~~~~~~~~~----~~~~~~~~D~~~~~~~~~~ 73 (254)
T PRK07478 7 KVAIITGASSGIGRAAAKLFAREGA-----KVVV--G--ARRQAELDQLVAEIRAEG----GEAVALAGDVRDEAYAKAL 73 (254)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCC-----EEEE--E--eCCHHHHHHHHHHHHhcC----CcEEEEEcCCCCHHHHHHH
Confidence 5899999999999999999998775 2443 2 344555555444444321 11111 111 11
Q ss_pred -----cccCCCcEEEEecccC--CCCC--Cch---hhhHHhhHH----HHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 168 -----ELFEDAEWALLIGAKP--RGPG--MER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 168 -----eal~dADvVIitag~p--rk~g--~~R---~dll~~N~~----I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
+.+...|++|..+|.. ..+- .+. ...+..|.. ..+...+.+.+. ..+.||+++.
T Consensus 74 ~~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~l~~~--~~~~iv~~sS 143 (254)
T PRK07478 74 VALAVERFGGLDIAFNNAGTLGEMGPVAEMSLEGWRETLATNLTSAFLGAKHQIPAMLAR--GGGSLIFTST 143 (254)
T ss_pred HHHHHHhcCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc--CCceEEEEec
Confidence 1233679999988752 2221 122 223555643 445555666553 3456666654
No 248
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=94.88 E-value=0.15 Score=46.72 Aligned_cols=25 Identities=20% Similarity=0.127 Sum_probs=22.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.+|.|+||+|.+|.+++..|+..|.
T Consensus 7 ~~vlItGas~~iG~~ia~~l~~~G~ 31 (257)
T PRK07067 7 KVALLTGAASGIGEAVAERYLAEGA 31 (257)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCC
Confidence 5799999999999999999998875
No 249
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=94.88 E-value=0.13 Score=54.62 Aligned_cols=117 Identities=20% Similarity=0.098 Sum_probs=61.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEe-cC--cc---c
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN--PY---E 168 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-t~--~~---e 168 (337)
+++||.|+||+|+||++++..|...+.- -.|. .+|.....+.+.. +.... . ..++... .| +. .
T Consensus 5 ~~~~VLVTGatGfIG~~lv~~Ll~~g~~---~~V~--~~d~~~~~~~~~~----l~~~~-~-~~~v~~~~~Dl~d~~~~~ 73 (668)
T PLN02260 5 EPKNILITGAAGFIASHVANRLIRNYPD---YKIV--VLDKLDYCSNLKN----LNPSK-S-SPNFKFVKGDIASADLVN 73 (668)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHhCCC---CEEE--EEeCCCccchhhh----hhhcc-c-CCCeEEEECCCCChHHHH
Confidence 3579999999999999999999876321 0132 2222110111111 11000 0 0112211 11 11 1
Q ss_pred -c--cCCCcEEEEecccCCCCC--CchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 169 -L--FEDAEWALLIGAKPRGPG--MERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 169 -a--l~dADvVIitag~prk~g--~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
. ..+.|+||-+|+...... ....+....|+.-...+.+.+++. +.-.++|.+|-
T Consensus 74 ~~~~~~~~D~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~-~~vkr~I~~SS 132 (668)
T PLN02260 74 YLLITEGIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVT-GQIRRFIHVST 132 (668)
T ss_pred HHHhhcCCCEEEECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHhc-CCCcEEEEEcc
Confidence 1 257999999887543111 122345677877777788877775 32235666663
No 250
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=94.88 E-value=0.24 Score=45.32 Aligned_cols=46 Identities=24% Similarity=0.144 Sum_probs=32.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHh
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~ 150 (337)
.+++.|+||+|.+|.+++..|+..|. .+.+ . +++.++++....++.
T Consensus 9 ~k~~lItGas~giG~~ia~~L~~~G~-----~vvl--~--~r~~~~~~~~~~~l~ 54 (254)
T PRK08085 9 GKNILITGSAQGIGFLLATGLAEYGA-----EIII--N--DITAERAELAVAKLR 54 (254)
T ss_pred CCEEEEECCCChHHHHHHHHHHHcCC-----EEEE--E--cCCHHHHHHHHHHHH
Confidence 45899999999999999999998774 2444 2 444455554444444
No 251
>PRK06197 short chain dehydrogenase; Provisional
Probab=94.88 E-value=0.42 Score=45.32 Aligned_cols=115 Identities=16% Similarity=0.126 Sum_probs=60.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEe-cC--ccc----
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN--PYE---- 168 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-t~--~~e---- 168 (337)
.++|.|+||+|.||.+++..|+..|. .|.+. .++.++++....++.... + ..++... .| +.+
T Consensus 16 ~k~vlItGas~gIG~~~a~~l~~~G~-----~vi~~----~r~~~~~~~~~~~l~~~~-~-~~~~~~~~~Dl~d~~~v~~ 84 (306)
T PRK06197 16 GRVAVVTGANTGLGYETAAALAAKGA-----HVVLA----VRNLDKGKAAAARITAAT-P-GADVTLQELDLTSLASVRA 84 (306)
T ss_pred CCEEEEcCCCCcHHHHHHHHHHHCCC-----EEEEE----eCCHHHHHHHHHHHHHhC-C-CCceEEEECCCCCHHHHHH
Confidence 36899999999999999999998774 24442 334344433333333211 0 0112111 11 111
Q ss_pred -------ccCCCcEEEEecccCCCCC-Cch---hhhHHhhH----HHHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 169 -------LFEDAEWALLIGAKPRGPG-MER---AGLLDING----QIFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 169 -------al~dADvVIitag~prk~g-~~R---~dll~~N~----~I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
.+...|++|..+|....+. .+. ...+..|. .+.+.+.+.+.+. ..+.||+++-
T Consensus 85 ~~~~~~~~~~~iD~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~--~~~~iV~vSS 152 (306)
T PRK06197 85 AADALRAAYPRIDLLINNAGVMYTPKQTTADGFELQFGTNHLGHFALTGLLLDRLLPV--PGSRVVTVSS 152 (306)
T ss_pred HHHHHHhhCCCCCEEEECCccccCCCccCCCCcchhhhhhhHHHHHHHHHHHHHHhhC--CCCEEEEECC
Confidence 2346899999887422111 111 12244443 3356666666653 3456777664
No 252
>PRK12747 short chain dehydrogenase; Provisional
Probab=94.86 E-value=0.62 Score=42.51 Aligned_cols=26 Identities=23% Similarity=0.151 Sum_probs=23.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.+++.|+||+|.+|.+++..|+..|.
T Consensus 4 ~k~~lItGas~gIG~~ia~~l~~~G~ 29 (252)
T PRK12747 4 GKVALVTGASRGIGRAIAKRLANDGA 29 (252)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC
Confidence 35899999999999999999998775
No 253
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=94.84 E-value=0.27 Score=41.58 Aligned_cols=23 Identities=22% Similarity=0.426 Sum_probs=21.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCC
Q 019713 98 NIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 98 KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
||.|+|+ |.+|+.++..|+..|+
T Consensus 1 ~VliiG~-GglGs~ia~~L~~~Gv 23 (143)
T cd01483 1 RVLLVGL-GGLGSEIALNLARSGV 23 (143)
T ss_pred CEEEECC-CHHHHHHHHHHHHCCC
Confidence 6899995 9999999999999998
No 254
>PRK09186 flagellin modification protein A; Provisional
Probab=94.83 E-value=0.33 Score=44.22 Aligned_cols=26 Identities=23% Similarity=0.339 Sum_probs=23.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.++|.|+||+|.+|.+++..|+..+.
T Consensus 4 ~k~vlItGas~giG~~~a~~l~~~g~ 29 (256)
T PRK09186 4 GKTILITGAGGLIGSALVKAILEAGG 29 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC
Confidence 46899999999999999999998775
No 255
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=94.83 E-value=0.28 Score=44.95 Aligned_cols=26 Identities=27% Similarity=0.489 Sum_probs=23.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
+..||+|||+ |.+|+.++..|+..|+
T Consensus 27 ~~~~V~ViG~-GglGs~ia~~La~~Gv 52 (212)
T PRK08644 27 KKAKVGIAGA-GGLGSNIAVALARSGV 52 (212)
T ss_pred hCCCEEEECc-CHHHHHHHHHHHHcCC
Confidence 3469999995 9999999999999987
No 256
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=94.83 E-value=0.11 Score=52.44 Aligned_cols=107 Identities=21% Similarity=0.229 Sum_probs=61.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCc
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dAD 174 (337)
+..+|+|+|+ |.+|..++..|...|.. .|.+ .+++.+++...+.++. ..+....+..+.+.++|
T Consensus 181 ~~~~vlViGa-G~iG~~~a~~L~~~G~~----~V~v----~~r~~~ra~~la~~~g-------~~~~~~~~~~~~l~~aD 244 (423)
T PRK00045 181 SGKKVLVIGA-GEMGELVAKHLAEKGVR----KITV----ANRTLERAEELAEEFG-------GEAIPLDELPEALAEAD 244 (423)
T ss_pred cCCEEEEECc-hHHHHHHHHHHHHCCCC----eEEE----EeCCHHHHHHHHHHcC-------CcEeeHHHHHHHhccCC
Confidence 4479999995 99999999998876642 2443 2555566554443322 11111123456788999
Q ss_pred EEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHH
Q 019713 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNA 229 (337)
Q Consensus 175 vVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t 229 (337)
+||.+.+.|. +-. +...++.. +..-.....++|-+++|-|+=.
T Consensus 245 vVI~aT~s~~-~~i--------~~~~l~~~---~~~~~~~~~vviDla~Prdid~ 287 (423)
T PRK00045 245 IVISSTGAPH-PII--------GKGMVERA---LKARRHRPLLLVDLAVPRDIEP 287 (423)
T ss_pred EEEECCCCCC-cEE--------cHHHHHHH---HhhccCCCeEEEEeCCCCCCcc
Confidence 9998765542 101 11112221 1111024568899999987643
No 257
>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional
Probab=94.81 E-value=0.096 Score=50.63 Aligned_cols=103 Identities=16% Similarity=0.101 Sum_probs=54.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEE-----Eec--Cccc
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-----IGI--NPYE 168 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~-----i~t--~~~e 168 (337)
|+||.|+||+|+||++++..|...+.- .+.+ .+.......+. .+.+.. + ..++. ++. +..+
T Consensus 1 ~~~vlVtGatGfIG~~l~~~L~~~g~~----~v~~--~~~~~~~~~~~----~~~~~~-~-~~~~~~~~~Dl~d~~~~~~ 68 (355)
T PRK10217 1 MRKILITGGAGFIGSALVRYIINETSD----AVVV--VDKLTYAGNLM----SLAPVA-Q-SERFAFEKVDICDRAELAR 68 (355)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHHcCCC----EEEE--EecCccccchh----hhhhcc-c-CCceEEEECCCcChHHHHH
Confidence 468999999999999999999987641 1222 22111111111 111100 0 00111 111 1123
Q ss_pred ccC--CCcEEEEecccCCCC--CCchhhhHHhhHHHHHHHHHHHHh
Q 019713 169 LFE--DAEWALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNA 210 (337)
Q Consensus 169 al~--dADvVIitag~prk~--g~~R~dll~~N~~I~~~i~~~I~~ 210 (337)
.++ +.|+||.++|..... ..........|..-...+.+.+.+
T Consensus 69 ~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~a~~~ 114 (355)
T PRK10217 69 VFTEHQPDCVMHLAAESHVDRSIDGPAAFIETNIVGTYTLLEAARA 114 (355)
T ss_pred HHhhcCCCEEEECCcccCcchhhhChHHHHHHhhHHHHHHHHHHHH
Confidence 344 389999988754211 112344667787777777777665
No 258
>PLN02653 GDP-mannose 4,6-dehydratase
Probab=94.81 E-value=0.063 Score=51.73 Aligned_cols=26 Identities=15% Similarity=0.013 Sum_probs=23.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.++|.|+||+|++|++++..|+..|.
T Consensus 6 ~~~vlVTGatGfiG~~l~~~L~~~G~ 31 (340)
T PLN02653 6 RKVALITGITGQDGSYLTEFLLSKGY 31 (340)
T ss_pred CCEEEEECCCCccHHHHHHHHHHCCC
Confidence 46899999999999999999998775
No 259
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=94.81 E-value=0.12 Score=50.79 Aligned_cols=24 Identities=17% Similarity=0.257 Sum_probs=22.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.||.|||+ |.+|+.+|..|+..|+
T Consensus 25 ~~VlIiG~-GglGs~va~~La~aGv 48 (338)
T PRK12475 25 KHVLIVGA-GALGAANAEALVRAGI 48 (338)
T ss_pred CcEEEECC-CHHHHHHHHHHHHcCC
Confidence 58999995 9999999999999987
No 260
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=94.80 E-value=0.64 Score=41.82 Aligned_cols=26 Identities=27% Similarity=0.171 Sum_probs=22.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
+++|.|+||+|.+|..++..|+..+.
T Consensus 5 ~~~ilI~Gasg~iG~~la~~l~~~g~ 30 (247)
T PRK05565 5 GKVAIVTGASGGIGRAIAELLAKEGA 30 (247)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC
Confidence 35899999999999999999988764
No 261
>PRK06101 short chain dehydrogenase; Provisional
Probab=94.79 E-value=0.12 Score=47.18 Aligned_cols=25 Identities=20% Similarity=0.296 Sum_probs=22.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.+|.|+||+|.+|.+++..|+..|.
T Consensus 2 ~~vlItGas~giG~~la~~L~~~G~ 26 (240)
T PRK06101 2 TAVLITGATSGIGKQLALDYAKQGW 26 (240)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhCCC
Confidence 5799999999999999999998765
No 262
>PRK07814 short chain dehydrogenase; Provisional
Probab=94.78 E-value=0.33 Score=44.91 Aligned_cols=26 Identities=15% Similarity=0.157 Sum_probs=23.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.++|.|+||+|.||.+++..|+..|.
T Consensus 10 ~~~vlItGasggIG~~~a~~l~~~G~ 35 (263)
T PRK07814 10 DQVAVVTGAGRGLGAAIALAFAEAGA 35 (263)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC
Confidence 46899999999999999999998775
No 263
>PRK07825 short chain dehydrogenase; Provisional
Probab=94.76 E-value=0.23 Score=46.06 Aligned_cols=114 Identities=14% Similarity=-0.031 Sum_probs=60.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEec---------Cc
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI---------NP 166 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t---------~~ 166 (337)
.++|.|+||+|.+|.+++..|+..|. .+.+. +++.++++....++.... . ....++. .-
T Consensus 5 ~~~ilVtGasggiG~~la~~l~~~G~-----~v~~~----~r~~~~~~~~~~~~~~~~-~--~~~D~~~~~~~~~~~~~~ 72 (273)
T PRK07825 5 GKVVAITGGARGIGLATARALAALGA-----RVAIG----DLDEALAKETAAELGLVV-G--GPLDVTDPASFAAFLDAV 72 (273)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-----EEEEE----ECCHHHHHHHHHHhccce-E--EEccCCCHHHHHHHHHHH
Confidence 35899999999999999999998775 24432 344555544333332110 0 0011110 00
Q ss_pred ccccCCCcEEEEecccCCCCC---Cc---hhhhHHhhHH----HHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 167 YELFEDAEWALLIGAKPRGPG---ME---RAGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 167 ~eal~dADvVIitag~prk~g---~~---R~dll~~N~~----I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
.+.+.+.|++|..+|...... .+ -...+..|.. +.+.+.+.+.+. ..+.|++++-
T Consensus 73 ~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~--~~g~iv~isS 137 (273)
T PRK07825 73 EADLGPIDVLVNNAGVMPVGPFLDEPDAVTRRILDVNVYGVILGSKLAAPRMVPR--GRGHVVNVAS 137 (273)
T ss_pred HHHcCCCCEEEECCCcCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCCEEEEEcC
Confidence 122357899999887542111 11 1123445543 445555666553 3456677763
No 264
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=94.76 E-value=0.49 Score=42.69 Aligned_cols=26 Identities=31% Similarity=0.241 Sum_probs=23.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.++|.|+||+|.+|.+++..|+..+.
T Consensus 6 ~~~ilItGasg~iG~~l~~~l~~~g~ 31 (251)
T PRK12826 6 GRVALVTGAARGIGRAIAVRLAADGA 31 (251)
T ss_pred CCEEEEcCCCCcHHHHHHHHHHHCCC
Confidence 46899999999999999999998774
No 265
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=94.75 E-value=0.55 Score=43.01 Aligned_cols=25 Identities=20% Similarity=0.150 Sum_probs=22.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.+|.|+||+|.+|.+++..|+..+.
T Consensus 3 k~ilItG~~~~IG~~la~~l~~~g~ 27 (259)
T PRK12384 3 QVAVVIGGGQTLGAFLCHGLAEEGY 27 (259)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCC
Confidence 4699999999999999999998774
No 266
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=94.74 E-value=0.17 Score=49.81 Aligned_cols=25 Identities=28% Similarity=0.402 Sum_probs=21.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
+||+|+||+|.+|..++..|.....
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~ 25 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPE 25 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCC
Confidence 5899999999999999999886543
No 267
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=94.67 E-value=0.32 Score=46.56 Aligned_cols=26 Identities=15% Similarity=0.048 Sum_probs=23.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.++|.|+||+|.||.+++..|+..|.
T Consensus 6 ~k~vlVTGas~gIG~~~a~~L~~~G~ 31 (322)
T PRK07453 6 KGTVIITGASSGVGLYAAKALAKRGW 31 (322)
T ss_pred CCEEEEEcCCChHHHHHHHHHHHCCC
Confidence 45799999999999999999998774
No 268
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=94.67 E-value=0.51 Score=43.39 Aligned_cols=45 Identities=20% Similarity=0.242 Sum_probs=31.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHh
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~ 150 (337)
|+|.|+||+|.+|.+++..|+..|. .|.+ . +++++.++....++.
T Consensus 1 m~vlItGas~gIG~aia~~l~~~G~-----~V~~--~--~r~~~~~~~~~~~l~ 45 (259)
T PRK08340 1 MNVLVTASSRGIGFNVARELLKKGA-----RVVI--S--SRNEENLEKALKELK 45 (259)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHcCC-----EEEE--E--eCCHHHHHHHHHHHH
Confidence 5899999999999999999998875 2443 2 445555554444444
No 269
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=94.66 E-value=0.15 Score=51.40 Aligned_cols=73 Identities=25% Similarity=0.271 Sum_probs=52.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCc
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dAD 174 (337)
+..||.|||| |.||.-+|..|...++. .|.+ ..+..++++..+-++. ..+....+..+.+.++|
T Consensus 177 ~~~~vlvIGA-Gem~~lva~~L~~~g~~----~i~I----aNRT~erA~~La~~~~-------~~~~~l~el~~~l~~~D 240 (414)
T COG0373 177 KDKKVLVIGA-GEMGELVAKHLAEKGVK----KITI----ANRTLERAEELAKKLG-------AEAVALEELLEALAEAD 240 (414)
T ss_pred ccCeEEEEcc-cHHHHHHHHHHHhCCCC----EEEE----EcCCHHHHHHHHHHhC-------CeeecHHHHHHhhhhCC
Confidence 4468999995 99999999999999984 2444 3667777766655544 12222245578899999
Q ss_pred EEEEecccC
Q 019713 175 WALLIGAKP 183 (337)
Q Consensus 175 vVIitag~p 183 (337)
+||.+-|.|
T Consensus 241 vVissTsa~ 249 (414)
T COG0373 241 VVISSTSAP 249 (414)
T ss_pred EEEEecCCC
Confidence 999876555
No 270
>PRK08618 ornithine cyclodeaminase; Validated
Probab=94.66 E-value=0.12 Score=50.36 Aligned_cols=74 Identities=16% Similarity=0.202 Sum_probs=47.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcE
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADv 175 (337)
..+|+|||+ |.+|...+..++...-+. .|.+ + +++.++++..+.++.+.. + .++....+..+++.++|+
T Consensus 127 ~~~v~iiGa-G~~a~~~~~al~~~~~~~---~v~v--~--~r~~~~a~~~~~~~~~~~-~--~~~~~~~~~~~~~~~aDi 195 (325)
T PRK08618 127 AKTLCLIGT-GGQAKGQLEAVLAVRDIE---RVRV--Y--SRTFEKAYAFAQEIQSKF-N--TEIYVVNSADEAIEEADI 195 (325)
T ss_pred CcEEEEECC-cHHHHHHHHHHHhcCCcc---EEEE--E--CCCHHHHHHHHHHHHHhc-C--CcEEEeCCHHHHHhcCCE
Confidence 578999995 999988776665322222 2444 2 566677776666665321 1 234445555678999999
Q ss_pred EEEec
Q 019713 176 ALLIG 180 (337)
Q Consensus 176 VIita 180 (337)
|+.+-
T Consensus 196 Vi~aT 200 (325)
T PRK08618 196 IVTVT 200 (325)
T ss_pred EEEcc
Confidence 98763
No 271
>PRK07985 oxidoreductase; Provisional
Probab=94.65 E-value=0.44 Score=45.23 Aligned_cols=25 Identities=16% Similarity=0.108 Sum_probs=23.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
+++.|+||+|.||.+++..|+..|.
T Consensus 50 k~vlITGas~gIG~aia~~L~~~G~ 74 (294)
T PRK07985 50 RKALVTGGDSGIGRAAAIAYAREGA 74 (294)
T ss_pred CEEEEECCCCcHHHHHHHHHHHCCC
Confidence 5899999999999999999998875
No 272
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=94.64 E-value=0.83 Score=41.54 Aligned_cols=48 Identities=31% Similarity=0.308 Sum_probs=33.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhh
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELED 151 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d 151 (337)
+.++|.|+||+|.+|.+++..|+..+. .|.+ + +++.+.++....++.+
T Consensus 11 ~~k~vlItG~~g~iG~~la~~l~~~G~-----~Vi~--~--~r~~~~~~~~~~~l~~ 58 (247)
T PRK08945 11 KDRIILVTGAGDGIGREAALTYARHGA-----TVIL--L--GRTEEKLEAVYDEIEA 58 (247)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-----cEEE--E--eCCHHHHHHHHHHHHh
Confidence 456899999999999999999998764 2443 2 4444555555455543
No 273
>PRK06141 ornithine cyclodeaminase; Validated
Probab=94.64 E-value=0.13 Score=49.83 Aligned_cols=73 Identities=16% Similarity=0.163 Sum_probs=48.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHH-cCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCC
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAA-GEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~-~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dA 173 (337)
...+|+||| +|.+|...+..+.. .+. . .|.+ .+++.++++..+.++.+. . .++....+..+++++|
T Consensus 124 ~~~~v~iiG-~G~~a~~~~~al~~~~~~-~---~V~V----~~Rs~~~a~~~a~~~~~~--g--~~~~~~~~~~~av~~a 190 (314)
T PRK06141 124 DASRLLVVG-TGRLASLLALAHASVRPI-K---QVRV----WGRDPAKAEALAAELRAQ--G--FDAEVVTDLEAAVRQA 190 (314)
T ss_pred CCceEEEEC-CcHHHHHHHHHHHhcCCC-C---EEEE----EcCCHHHHHHHHHHHHhc--C--CceEEeCCHHHHHhcC
Confidence 357999999 59999999876654 342 1 2544 256777777777666532 1 1345555566789999
Q ss_pred cEEEEec
Q 019713 174 EWALLIG 180 (337)
Q Consensus 174 DvVIita 180 (337)
|+|+.+-
T Consensus 191 DIVi~aT 197 (314)
T PRK06141 191 DIISCAT 197 (314)
T ss_pred CEEEEee
Confidence 9986643
No 274
>KOG1429 consensus dTDP-glucose 4-6-dehydratase/UDP-glucuronic acid decarboxylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis]
Probab=94.62 E-value=0.069 Score=51.42 Aligned_cols=75 Identities=24% Similarity=0.229 Sum_probs=45.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCc
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dAD 174 (337)
+.+||+|+||+|+||||++-.|...+. + .|++ |-. -.|....++++......++........-+..+|
T Consensus 26 ~~lrI~itGgaGFIgSHLvdkLm~egh--~--VIa~-----Dn~---ftg~k~n~~~~~~~~~fel~~hdv~~pl~~evD 93 (350)
T KOG1429|consen 26 QNLRILITGGAGFIGSHLVDKLMTEGH--E--VIAL-----DNY---FTGRKENLEHWIGHPNFELIRHDVVEPLLKEVD 93 (350)
T ss_pred CCcEEEEecCcchHHHHHHHHHHhcCC--e--EEEE-----ecc---cccchhhcchhccCcceeEEEeechhHHHHHhh
Confidence 458999999999999999999988773 2 2333 211 112223344443222223333333345788999
Q ss_pred EEEEecc
Q 019713 175 WALLIGA 181 (337)
Q Consensus 175 vVIitag 181 (337)
-|+-.|.
T Consensus 94 ~IyhLAa 100 (350)
T KOG1429|consen 94 QIYHLAA 100 (350)
T ss_pred hhhhhcc
Confidence 9986654
No 275
>PRK05717 oxidoreductase; Validated
Probab=94.62 E-value=0.082 Score=48.55 Aligned_cols=26 Identities=27% Similarity=-0.005 Sum_probs=23.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.++|.|+||+|.+|.+++..|+..+.
T Consensus 10 ~k~vlItG~sg~IG~~~a~~l~~~g~ 35 (255)
T PRK05717 10 GRVALVTGAARGIGLGIAAWLIAEGW 35 (255)
T ss_pred CCEEEEeCCcchHHHHHHHHHHHcCC
Confidence 35799999999999999999998764
No 276
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=94.60 E-value=0.14 Score=49.41 Aligned_cols=74 Identities=18% Similarity=0.160 Sum_probs=51.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCc
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dAD 174 (337)
...+++||| +|..|..-+..++.-.-+. .|.+ + +++.++++..+.++.+.. ..++.+..+..+++++||
T Consensus 116 da~~l~iiG-aG~QA~~~~~a~~~v~~i~---~v~v--~--~r~~~~a~~f~~~~~~~~---~~~v~~~~~~~eav~~aD 184 (301)
T PRK06407 116 NVENFTIIG-SGFQAETQLEGMASVYNPK---RIRV--Y--SRNFDHARAFAERFSKEF---GVDIRPVDNAEAALRDAD 184 (301)
T ss_pred CCcEEEEEC-CcHHHHHHHHHHHhcCCCC---EEEE--E--CCCHHHHHHHHHHHHHhc---CCcEEEeCCHHHHHhcCC
Confidence 357999999 5999987776665532222 2544 3 567778887777776532 235666667789999999
Q ss_pred EEEEe
Q 019713 175 WALLI 179 (337)
Q Consensus 175 vVIit 179 (337)
+|+.+
T Consensus 185 IV~ta 189 (301)
T PRK06407 185 TITSI 189 (301)
T ss_pred EEEEe
Confidence 99864
No 277
>PRK12744 short chain dehydrogenase; Provisional
Probab=94.60 E-value=0.6 Score=42.83 Aligned_cols=25 Identities=20% Similarity=0.218 Sum_probs=22.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
++|.|+||+|.+|.+++..|+..|.
T Consensus 9 k~vlItGa~~gIG~~~a~~l~~~G~ 33 (257)
T PRK12744 9 KVVLIAGGAKNLGGLIARDLAAQGA 33 (257)
T ss_pred cEEEEECCCchHHHHHHHHHHHCCC
Confidence 5899999999999999999998765
No 278
>PRK08818 prephenate dehydrogenase; Provisional
Probab=94.60 E-value=0.17 Score=50.46 Aligned_cols=25 Identities=20% Similarity=0.201 Sum_probs=21.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHc
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAG 119 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~ 119 (337)
-..||+|||.+|.||.+++..|...
T Consensus 3 ~~~~I~IIGl~GliGgslA~alk~~ 27 (370)
T PRK08818 3 AQPVVGIVGSAGAYGRWLARFLRTR 27 (370)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhc
Confidence 3469999995599999999999764
No 279
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=94.60 E-value=0.47 Score=43.38 Aligned_cols=26 Identities=23% Similarity=0.106 Sum_probs=23.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.++|.|+||+|.+|..++..|+..|.
T Consensus 10 ~k~vlItGa~g~iG~~ia~~l~~~G~ 35 (255)
T PRK07523 10 GRRALVTGSSQGIGYALAEGLAQAGA 35 (255)
T ss_pred CCEEEEECCcchHHHHHHHHHHHcCC
Confidence 36899999999999999999998775
No 280
>PRK07890 short chain dehydrogenase; Provisional
Probab=94.57 E-value=0.45 Score=43.36 Aligned_cols=26 Identities=19% Similarity=0.166 Sum_probs=23.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.++|.|+||+|.||.+++..|+..|.
T Consensus 5 ~k~vlItGa~~~IG~~la~~l~~~G~ 30 (258)
T PRK07890 5 GKVVVVSGVGPGLGRTLAVRAARAGA 30 (258)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHcCC
Confidence 35899999999999999999998875
No 281
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=94.55 E-value=0.99 Score=42.48 Aligned_cols=24 Identities=33% Similarity=0.613 Sum_probs=20.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHc
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAG 119 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~ 119 (337)
|+||+|+|++|.||..++..+...
T Consensus 1 ~mkV~IiG~~G~mG~~i~~~l~~~ 24 (257)
T PRK00048 1 MIKVAVAGASGRMGRELIEAVEAA 24 (257)
T ss_pred CcEEEEECCCCHHHHHHHHHHHhC
Confidence 479999996699999999877654
No 282
>PRK05993 short chain dehydrogenase; Provisional
Probab=94.55 E-value=0.13 Score=48.12 Aligned_cols=26 Identities=15% Similarity=0.096 Sum_probs=22.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
+++|.|+||+|.+|.+++..|+..|.
T Consensus 4 ~k~vlItGasggiG~~la~~l~~~G~ 29 (277)
T PRK05993 4 KRSILITGCSSGIGAYCARALQSDGW 29 (277)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC
Confidence 45799999999999999999988764
No 283
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=94.45 E-value=0.16 Score=49.60 Aligned_cols=74 Identities=22% Similarity=0.243 Sum_probs=49.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHH-cCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCC
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAA-GEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~-~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dA 173 (337)
...+++|||+ |..|...+..|+. .++ . .|.+ .+++.++++..+.++.+.. ..++....+..+++.+|
T Consensus 128 ~~~~v~iiGa-G~qA~~~~~al~~~~~i-~---~v~V----~~R~~~~a~~~a~~~~~~~---g~~v~~~~~~~~av~~a 195 (326)
T TIGR02992 128 DSSVVAIFGA-GMQARLQLEALTLVRDI-R---SARI----WARDSAKAEALALQLSSLL---GIDVTAATDPRAAMSGA 195 (326)
T ss_pred CCcEEEEECC-CHHHHHHHHHHHHhCCc-c---EEEE----ECCCHHHHHHHHHHHHhhc---CceEEEeCCHHHHhccC
Confidence 3568999995 9999998888864 433 2 2444 2567777777766665321 12344455567789999
Q ss_pred cEEEEec
Q 019713 174 EWALLIG 180 (337)
Q Consensus 174 DvVIita 180 (337)
|+|+.+-
T Consensus 196 DiVvtaT 202 (326)
T TIGR02992 196 DIIVTTT 202 (326)
T ss_pred CEEEEec
Confidence 9998763
No 284
>PRK06138 short chain dehydrogenase; Provisional
Probab=94.44 E-value=0.79 Score=41.54 Aligned_cols=26 Identities=19% Similarity=0.008 Sum_probs=23.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.++|.|+||+|.+|++++..|+..|.
T Consensus 5 ~k~~lItG~sg~iG~~la~~l~~~G~ 30 (252)
T PRK06138 5 GRVAIVTGAGSGIGRATAKLFAREGA 30 (252)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHCCC
Confidence 35899999999999999999998764
No 285
>PRK08219 short chain dehydrogenase; Provisional
Probab=94.44 E-value=0.22 Score=44.33 Aligned_cols=24 Identities=21% Similarity=0.194 Sum_probs=21.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHc
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAG 119 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~ 119 (337)
+++|.|+||+|.+|..++..|+..
T Consensus 3 ~~~vlVtG~~g~iG~~l~~~l~~~ 26 (227)
T PRK08219 3 RPTALITGASRGIGAAIARELAPT 26 (227)
T ss_pred CCEEEEecCCcHHHHHHHHHHHhh
Confidence 468999999999999999999876
No 286
>PRK06482 short chain dehydrogenase; Provisional
Probab=94.43 E-value=0.17 Score=47.03 Aligned_cols=25 Identities=16% Similarity=0.102 Sum_probs=22.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
++|.|+||+|.+|++++..|+..+.
T Consensus 3 k~vlVtGasg~IG~~la~~L~~~g~ 27 (276)
T PRK06482 3 KTWFITGASSGFGRGMTERLLARGD 27 (276)
T ss_pred CEEEEecCCCHHHHHHHHHHHHCCC
Confidence 4799999999999999999998774
No 287
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=94.42 E-value=0.26 Score=47.97 Aligned_cols=65 Identities=14% Similarity=0.189 Sum_probs=40.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcE
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADv 175 (337)
.+||+|||+ |++|.+++..|...++ .+.+.+ +...+.++. +.+. .+... +..+++++||+
T Consensus 3 ~kkIgiIG~-G~mG~AiA~~L~~sG~-----~Viv~~---~~~~~~~~~----a~~~------Gv~~~-s~~ea~~~ADi 62 (314)
T TIGR00465 3 GKTVAIIGY-GSQGHAQALNLRDSGL-----NVIVGL---RKGGASWKK----ATED------GFKVG-TVEEAIPQADL 62 (314)
T ss_pred cCEEEEEeE-cHHHHHHHHHHHHCCC-----eEEEEE---CcChhhHHH----HHHC------CCEEC-CHHHHHhcCCE
Confidence 368999994 9999999999988775 133221 222222221 1111 12222 35677899999
Q ss_pred EEEec
Q 019713 176 ALLIG 180 (337)
Q Consensus 176 VIita 180 (337)
|+++.
T Consensus 63 VvLaV 67 (314)
T TIGR00465 63 IMNLL 67 (314)
T ss_pred EEEeC
Confidence 99985
No 288
>PLN00203 glutamyl-tRNA reductase
Probab=94.42 E-value=0.15 Score=53.03 Aligned_cols=106 Identities=17% Similarity=0.167 Sum_probs=61.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcE
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADv 175 (337)
..||+|||| |.+|..++..|...|.- .|.+ .+++.++++..+.++... ...+....+..+.+.++|+
T Consensus 266 ~kkVlVIGA-G~mG~~~a~~L~~~G~~----~V~V----~nRs~era~~La~~~~g~----~i~~~~~~dl~~al~~aDV 332 (519)
T PLN00203 266 SARVLVIGA-GKMGKLLVKHLVSKGCT----KMVV----VNRSEERVAALREEFPDV----EIIYKPLDEMLACAAEADV 332 (519)
T ss_pred CCEEEEEeC-HHHHHHHHHHHHhCCCC----eEEE----EeCCHHHHHHHHHHhCCC----ceEeecHhhHHHHHhcCCE
Confidence 469999995 99999999999877642 2444 356666666554333210 0011112344578899999
Q ss_pred EEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhh----cCCCeEEEEeCCCchhH
Q 019713 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAV----ASRNVKVIVVGNPCNTN 228 (337)
Q Consensus 176 VIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~----a~p~aivIvvtNPvd~~ 228 (337)
||.+-+.+. | -+.++..+.+.+. ..| -.+|-++.|-|+=
T Consensus 333 VIsAT~s~~-p------------vI~~e~l~~~~~~~~~~~~~-~~~IDLAvPRdId 375 (519)
T PLN00203 333 VFTSTSSET-P------------LFLKEHVEALPPASDTVGGK-RLFVDISVPRNVG 375 (519)
T ss_pred EEEccCCCC-C------------eeCHHHHHHhhhcccccCCC-eEEEEeCCCCCCc
Confidence 987644332 1 1223333333211 122 3678899997664
No 289
>PRK09072 short chain dehydrogenase; Provisional
Probab=94.41 E-value=0.87 Score=41.91 Aligned_cols=26 Identities=31% Similarity=0.328 Sum_probs=23.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
..+|.|+||+|.+|..++..|+..|.
T Consensus 5 ~~~vlItG~s~~iG~~ia~~l~~~G~ 30 (263)
T PRK09072 5 DKRVLLTGASGGIGQALAEALAAAGA 30 (263)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC
Confidence 35899999999999999999998774
No 290
>PRK09291 short chain dehydrogenase; Provisional
Probab=94.41 E-value=0.9 Score=41.36 Aligned_cols=25 Identities=20% Similarity=0.295 Sum_probs=22.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
++|.|+||+|.+|.+++..|+..|.
T Consensus 3 ~~vlVtGasg~iG~~ia~~l~~~G~ 27 (257)
T PRK09291 3 KTILITGAGSGFGREVALRLARKGH 27 (257)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC
Confidence 4799999999999999999998774
No 291
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=94.37 E-value=0.33 Score=39.89 Aligned_cols=23 Identities=35% Similarity=0.527 Sum_probs=19.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHcC
Q 019713 98 NIAVSGAAGMIANHLLFKLAAGE 120 (337)
Q Consensus 98 KI~IIGAaG~VG~~la~~L~~~~ 120 (337)
||+|+|++|.+|..++..|....
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~ 23 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHP 23 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCC
Confidence 68999988999999988887754
No 292
>PRK06172 short chain dehydrogenase; Provisional
Probab=94.37 E-value=0.51 Score=43.07 Aligned_cols=26 Identities=19% Similarity=0.097 Sum_probs=23.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.++|.|+||+|.+|..++..|+..+.
T Consensus 7 ~k~ilItGas~~iG~~ia~~l~~~G~ 32 (253)
T PRK06172 7 GKVALVTGGAAGIGRATALAFAREGA 32 (253)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHcCC
Confidence 46899999999999999999998764
No 293
>PRK06182 short chain dehydrogenase; Validated
Probab=94.36 E-value=0.17 Score=47.09 Aligned_cols=26 Identities=27% Similarity=0.156 Sum_probs=23.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.++|.|+||+|.+|.+++..|+..|.
T Consensus 3 ~k~vlItGasggiG~~la~~l~~~G~ 28 (273)
T PRK06182 3 KKVALVTGASSGIGKATARRLAAQGY 28 (273)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC
Confidence 35899999999999999999988764
No 294
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=94.36 E-value=0.26 Score=48.12 Aligned_cols=26 Identities=19% Similarity=0.229 Sum_probs=23.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
++||+|+||+|.+|..+...|.....
T Consensus 2 ~~~VaIvGAtGy~G~eLlrlL~~hp~ 27 (313)
T PRK11863 2 KPKVFIDGEAGTTGLQIRERLAGRSD 27 (313)
T ss_pred CcEEEEECCCCHHHHHHHHHHhcCCC
Confidence 57999999999999999999988764
No 295
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=94.35 E-value=0.16 Score=50.00 Aligned_cols=25 Identities=20% Similarity=0.211 Sum_probs=22.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
..||.|||| |.+|+.++..|+..|+
T Consensus 24 ~~~VlVvG~-GglGs~va~~La~aGv 48 (339)
T PRK07688 24 EKHVLIIGA-GALGTANAEMLVRAGV 48 (339)
T ss_pred CCcEEEECC-CHHHHHHHHHHHHcCC
Confidence 468999995 9999999999999987
No 296
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=94.33 E-value=0.7 Score=41.74 Aligned_cols=26 Identities=27% Similarity=0.248 Sum_probs=23.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.++|.|+||+|.+|.+++..|+..|.
T Consensus 7 ~~~vlVtG~sg~iG~~l~~~L~~~G~ 32 (239)
T PRK07666 7 GKNALITGAGRGIGRAVAIALAKEGV 32 (239)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHCCC
Confidence 35799999999999999999988775
No 297
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=94.30 E-value=0.21 Score=46.81 Aligned_cols=25 Identities=28% Similarity=0.230 Sum_probs=22.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
..||+|||+ |.+|+.++..|+..|+
T Consensus 32 ~~~VliiG~-GglGs~va~~La~~Gv 56 (245)
T PRK05690 32 AARVLVVGL-GGLGCAASQYLAAAGV 56 (245)
T ss_pred CCeEEEECC-CHHHHHHHHHHHHcCC
Confidence 369999995 9999999999999987
No 298
>PRK07904 short chain dehydrogenase; Provisional
Probab=94.29 E-value=0.72 Score=42.66 Aligned_cols=26 Identities=12% Similarity=0.074 Sum_probs=22.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcC
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGE 120 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~ 120 (337)
+.++|.|+||+|.+|.+++..|+..+
T Consensus 7 ~~~~vlItGas~giG~~la~~l~~~g 32 (253)
T PRK07904 7 NPQTILLLGGTSEIGLAICERYLKNA 32 (253)
T ss_pred CCcEEEEEcCCcHHHHHHHHHHHhcC
Confidence 34689999999999999999998764
No 299
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=94.27 E-value=1.2 Score=40.00 Aligned_cols=27 Identities=26% Similarity=0.172 Sum_probs=23.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
+.++|.|+||+|.+|.+++..|+..|.
T Consensus 4 ~~~~vlItG~sg~iG~~l~~~l~~~G~ 30 (248)
T PRK05557 4 EGKVALVTGASRGIGRAIAERLAAQGA 30 (248)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC
Confidence 346899999999999999999998775
No 300
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=94.26 E-value=0.57 Score=42.59 Aligned_cols=24 Identities=25% Similarity=0.216 Sum_probs=21.9
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCC
Q 019713 98 NIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 98 KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
++.|+||+|.+|.+++..|+..+.
T Consensus 2 ~~lItG~sg~iG~~la~~l~~~G~ 25 (254)
T TIGR02415 2 VALVTGGAQGIGKGIAERLAKDGF 25 (254)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCC
Confidence 689999999999999999998775
No 301
>PRK05866 short chain dehydrogenase; Provisional
Probab=94.26 E-value=0.82 Score=43.40 Aligned_cols=45 Identities=20% Similarity=0.218 Sum_probs=32.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHh
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~ 150 (337)
++|.|+||+|.+|.+++..|+..|. .|.+ .+++.+.++....++.
T Consensus 41 k~vlItGasggIG~~la~~La~~G~-----~Vi~----~~R~~~~l~~~~~~l~ 85 (293)
T PRK05866 41 KRILLTGASSGIGEAAAEQFARRGA-----TVVA----VARREDLLDAVADRIT 85 (293)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHHH
Confidence 5899999999999999999998774 2443 2455566655444443
No 302
>PLN02712 arogenate dehydrogenase
Probab=94.25 E-value=0.63 Score=49.92 Aligned_cols=25 Identities=20% Similarity=0.280 Sum_probs=21.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcC
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGE 120 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~ 120 (337)
+.+||+||| .|.||.+++..|...|
T Consensus 368 ~~~kIgIIG-lG~mG~slA~~L~~~G 392 (667)
T PLN02712 368 SKLKIAIVG-FGNFGQFLAKTMVKQG 392 (667)
T ss_pred CCCEEEEEe-cCHHHHHHHHHHHHCc
Confidence 557999999 5999999999998765
No 303
>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed
Probab=94.25 E-value=0.2 Score=45.25 Aligned_cols=26 Identities=27% Similarity=0.225 Sum_probs=23.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.++|.|+||+|.+|.+++..|+..+.
T Consensus 6 ~~~vlItGa~g~iG~~la~~l~~~g~ 31 (245)
T PRK12936 6 GRKALVTGASGGIGEEIARLLHAQGA 31 (245)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC
Confidence 46899999999999999999998774
No 304
>COG5322 Predicted dehydrogenase [General function prediction only]
Probab=94.20 E-value=0.11 Score=49.63 Aligned_cols=139 Identities=17% Similarity=0.179 Sum_probs=78.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcEE
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADvV 176 (337)
..|+|+||.|.||+.++..|+...- .++|.+-|. ++...+.+.+.+. ++.+.+..+ .++ ++-++|++
T Consensus 168 atvaivGa~G~Ia~~Iar~la~~~~-----~~~ll~r~a----ea~~rq~l~~l~e--~~~~~~i~s-~d~-~~~~e~i~ 234 (351)
T COG5322 168 ATVAIVGATGDIASAIARWLAPKVG-----VKELLLRDA----EARNRQRLTLLQE--ELGRGKIMS-LDY-ALPQEDIL 234 (351)
T ss_pred CeEEEecCCchHHHHHHHHhccccC-----EEEEecccH----Hhhhhhhhhhccc--ccCCCeeee-ccc-cccccceE
Confidence 5899999999999999999976543 245543332 2333333333322 444454443 344 45667777
Q ss_pred EEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHHHHHHHHCCCCCCCeEEecCchhHHHHH
Q 019713 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAK 256 (337)
Q Consensus 177 Iitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t~i~~k~s~~~p~kvIG~gT~LDs~R~~ 256 (337)
|..+..|.. ..|+-+ +-.|.++|+-.+-|-|+-+++ |+-+++ ++|-.|-.-.+.-+.
T Consensus 235 v~vAs~~~g------------~~I~pq-------~lkpg~~ivD~g~P~dvd~~v--k~~~~V--~Ii~GGlV~~s~~it 291 (351)
T COG5322 235 VWVASMPKG------------VEIFPQ-------HLKPGCLIVDGGYPKDVDTSV--KNVGGV--RIIPGGLVEHSLDIT 291 (351)
T ss_pred EEEeecCCC------------ceechh-------hccCCeEEEcCCcCccccccc--ccCCCe--EEecCccccCccccc
Confidence 777665532 222221 125888888888898887765 322222 566333222244445
Q ss_pred HHHHHHhCCCccccc
Q 019713 257 CQLALKAGVFYDKVS 271 (337)
Q Consensus 257 ~~lA~~lgv~~~~V~ 271 (337)
+-+-+..+.+...+.
T Consensus 292 ~gi~~~~~~p~~~l~ 306 (351)
T COG5322 292 WGIMKIVGMPVRQLF 306 (351)
T ss_pred hhHHHHcccchhhHH
Confidence 555555555444444
No 305
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=94.16 E-value=0.26 Score=44.82 Aligned_cols=88 Identities=14% Similarity=0.084 Sum_probs=49.0
Q ss_pred EEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEE-ecC----cccccCCC
Q 019713 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN----PYELFEDA 173 (337)
Q Consensus 99 I~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~t~----~~eal~dA 173 (337)
|+|+||+|.+|++++..|...+. .|..... +.+.+.++ .+++.. ..+.. .-+ ..++|+|+
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~-----~V~~l~R--~~~~~~~~----~l~~~g----~~vv~~d~~~~~~l~~al~g~ 65 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGF-----SVRALVR--DPSSDRAQ----QLQALG----AEVVEADYDDPESLVAALKGV 65 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTG-----CEEEEES--SSHHHHHH----HHHHTT----TEEEES-TT-HHHHHHHHTTC
T ss_pred CEEECCccHHHHHHHHHHHhCCC-----CcEEEEe--ccchhhhh----hhhccc----ceEeecccCCHHHHHHHHcCC
Confidence 78999999999999999999553 3544322 22222222 123221 11211 111 24679999
Q ss_pred cEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhh
Q 019713 174 EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAV 211 (337)
Q Consensus 174 DvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~ 211 (337)
|.|+++-+... .. -.+..+.++++..+.
T Consensus 66 d~v~~~~~~~~---~~-------~~~~~~~li~Aa~~a 93 (233)
T PF05368_consen 66 DAVFSVTPPSH---PS-------ELEQQKNLIDAAKAA 93 (233)
T ss_dssp SEEEEESSCSC---CC-------HHHHHHHHHHHHHHH
T ss_pred ceEEeecCcch---hh-------hhhhhhhHHHhhhcc
Confidence 99998754322 11 134445566666664
No 306
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=94.13 E-value=0.34 Score=47.59 Aligned_cols=25 Identities=28% Similarity=0.460 Sum_probs=21.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGE 120 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~ 120 (337)
|+||+|+||+|.+|..++..|....
T Consensus 2 m~kVaIiGAtG~vG~~l~~~L~~~p 26 (343)
T PRK00436 2 MIKVGIVGASGYTGGELLRLLLNHP 26 (343)
T ss_pred CeEEEEECCCCHHHHHHHHHHHcCC
Confidence 5799999999999999999887654
No 307
>PRK05867 short chain dehydrogenase; Provisional
Probab=94.11 E-value=1 Score=41.13 Aligned_cols=45 Identities=24% Similarity=0.353 Sum_probs=31.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHh
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~ 150 (337)
+++.|+||+|.+|.+++..|+..|. .|.+. +++.+.++..+.++.
T Consensus 10 k~vlVtGas~gIG~~ia~~l~~~G~-----~V~~~----~r~~~~~~~~~~~l~ 54 (253)
T PRK05867 10 KRALITGASTGIGKRVALAYVEAGA-----QVAIA----ARHLDALEKLADEIG 54 (253)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCC-----EEEEE----cCCHHHHHHHHHHHH
Confidence 5799999999999999999998775 24442 344455554444443
No 308
>PRK07024 short chain dehydrogenase; Provisional
Probab=94.10 E-value=0.54 Score=43.18 Aligned_cols=26 Identities=19% Similarity=0.231 Sum_probs=23.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
+++|.|+||+|.+|.+++..|+..|.
T Consensus 2 ~~~vlItGas~gIG~~la~~l~~~G~ 27 (257)
T PRK07024 2 PLKVFITGASSGIGQALAREYARQGA 27 (257)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCCC
Confidence 35899999999999999999998764
No 309
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=94.10 E-value=0.16 Score=49.38 Aligned_cols=72 Identities=26% Similarity=0.217 Sum_probs=47.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHH-cCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCC
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAA-GEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~-~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dA 173 (337)
...+++||| +|..|..-+..+.. .+ +. .|.+ + +++.++++..+.++++ . ...+....+..+++++|
T Consensus 127 ~~~~l~viG-aG~QA~~~~~a~~~~~~-i~---~v~v--~--~r~~~~~~~~~~~~~~-~---~~~v~~~~~~~~av~~a 193 (313)
T PF02423_consen 127 DARTLGVIG-AGVQARWHLRALAAVRP-IK---EVRV--Y--SRSPERAEAFAARLRD-L---GVPVVAVDSAEEAVRGA 193 (313)
T ss_dssp T--EEEEE---SHHHHHHHHHHHHHS---S---EEEE--E---SSHHHHHHHHHHHHC-C---CTCEEEESSHHHHHTTS
T ss_pred CCceEEEEC-CCHHHHHHHHHHHHhCC-ce---EEEE--E--ccChhHHHHHHHhhcc-c---cccceeccchhhhcccC
Confidence 357999999 59999887766653 34 32 3554 2 5677888888777776 2 34677777778999999
Q ss_pred cEEEEe
Q 019713 174 EWALLI 179 (337)
Q Consensus 174 DvVIit 179 (337)
|+|+.+
T Consensus 194 Dii~ta 199 (313)
T PF02423_consen 194 DIIVTA 199 (313)
T ss_dssp SEEEE-
T ss_pred CEEEEc
Confidence 998864
No 310
>PRK12743 oxidoreductase; Provisional
Probab=94.07 E-value=1.4 Score=40.35 Aligned_cols=25 Identities=16% Similarity=0.056 Sum_probs=22.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.+|.|+||+|.||.+++..|+..|.
T Consensus 3 k~vlItGas~giG~~~a~~l~~~G~ 27 (256)
T PRK12743 3 QVAIVTASDSGIGKACALLLAQQGF 27 (256)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCC
Confidence 4799999999999999999998775
No 311
>PRK05865 hypothetical protein; Provisional
Probab=94.07 E-value=0.13 Score=56.51 Aligned_cols=103 Identities=17% Similarity=0.080 Sum_probs=57.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEec--CcccccCCCc
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI--NPYELFEDAE 174 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t--~~~eal~dAD 174 (337)
|||.|+||+|++|++++..|+..+. .|.. + +++.... +.... .+ ....+.. +..+.++++|
T Consensus 1 MkILVTGATGfIGs~La~~Ll~~G~-----~Vv~--l--~R~~~~~------~~~~v-~~-v~gDL~D~~~l~~al~~vD 63 (854)
T PRK05865 1 MRIAVTGASGVLGRGLTARLLSQGH-----EVVG--I--ARHRPDS------WPSSA-DF-IAADIRDATAVESAMTGAD 63 (854)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcC-----EEEE--E--ECCchhh------cccCc-eE-EEeeCCCHHHHHHHHhCCC
Confidence 5899999999999999999988764 2433 2 2221110 00000 00 0011111 1234578899
Q ss_pred EEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCc
Q 019713 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC 225 (337)
Q Consensus 175 vVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPv 225 (337)
+||.+++... + ....|..-...+.+.+.+. +. ..+|++|.+.
T Consensus 64 ~VVHlAa~~~-~------~~~vNv~GT~nLLeAa~~~-gv-kr~V~iSS~~ 105 (854)
T PRK05865 64 VVAHCAWVRG-R------NDHINIDGTANVLKAMAET-GT-GRIVFTSSGH 105 (854)
T ss_pred EEEECCCccc-c------hHHHHHHHHHHHHHHHHHc-CC-CeEEEECCcH
Confidence 9999886432 1 2355666666666666664 22 2566666653
No 312
>PRK12829 short chain dehydrogenase; Provisional
Probab=94.07 E-value=1.4 Score=40.24 Aligned_cols=27 Identities=19% Similarity=0.222 Sum_probs=24.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
+.++|.|+||+|.+|.+++..|+..+.
T Consensus 10 ~~~~vlItGa~g~iG~~~a~~L~~~g~ 36 (264)
T PRK12829 10 DGLRVLVTGGASGIGRAIAEAFAEAGA 36 (264)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHHCCC
Confidence 447999999999999999999998775
No 313
>PRK07677 short chain dehydrogenase; Provisional
Probab=94.06 E-value=1.3 Score=40.56 Aligned_cols=25 Identities=8% Similarity=0.202 Sum_probs=22.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
+++.|+||+|.+|.+++..|+..|.
T Consensus 2 k~~lItG~s~giG~~ia~~l~~~G~ 26 (252)
T PRK07677 2 KVVIITGGSSGMGKAMAKRFAEEGA 26 (252)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCC
Confidence 4789999999999999999998775
No 314
>PRK08703 short chain dehydrogenase; Provisional
Probab=94.06 E-value=1.1 Score=40.40 Aligned_cols=44 Identities=25% Similarity=0.295 Sum_probs=31.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhH
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMEL 149 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL 149 (337)
++|.|+||+|.+|.+++..|+..+. .|.+ + +++.+.++....++
T Consensus 7 k~vlItG~sggiG~~la~~l~~~g~-----~V~~--~--~r~~~~~~~~~~~l 50 (239)
T PRK08703 7 KTILVTGASQGLGEQVAKAYAAAGA-----TVIL--V--ARHQKKLEKVYDAI 50 (239)
T ss_pred CEEEEECCCCcHHHHHHHHHHHcCC-----EEEE--E--eCChHHHHHHHHHH
Confidence 5899999999999999999998764 2443 2 44555555443333
No 315
>PLN02780 ketoreductase/ oxidoreductase
Probab=94.04 E-value=0.42 Score=46.22 Aligned_cols=46 Identities=22% Similarity=0.307 Sum_probs=35.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhh
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELED 151 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d 151 (337)
..+.|+||+|.||.++|..|+..|. .|.+ .+++.++++..+.++++
T Consensus 54 ~~~lITGAs~GIG~alA~~La~~G~-----~Vil----~~R~~~~l~~~~~~l~~ 99 (320)
T PLN02780 54 SWALVTGPTDGIGKGFAFQLARKGL-----NLVL----VARNPDKLKDVSDSIQS 99 (320)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCC-----CEEE----EECCHHHHHHHHHHHHH
Confidence 5789999999999999999998875 2554 35566777776666654
No 316
>PRK07340 ornithine cyclodeaminase; Validated
Probab=94.04 E-value=0.19 Score=48.59 Aligned_cols=72 Identities=13% Similarity=0.075 Sum_probs=48.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHH-cCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCC
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAA-GEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~-~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dA 173 (337)
...+|+||| +|.+|...+..+.. .++ . .|.+ + +++.++++..+.++.+. . ..+. ..+..+++.+|
T Consensus 124 ~~~~v~IiG-aG~qa~~~~~al~~~~~~-~---~v~v--~--~r~~~~a~~~a~~~~~~--~--~~~~-~~~~~~av~~a 189 (304)
T PRK07340 124 PPGDLLLIG-TGVQARAHLEAFAAGLPV-R---RVWV--R--GRTAASAAAFCAHARAL--G--PTAE-PLDGEAIPEAV 189 (304)
T ss_pred CCCEEEEEC-CcHHHHHHHHHHHHhCCC-C---EEEE--E--cCCHHHHHHHHHHHHhc--C--CeeE-ECCHHHHhhcC
Confidence 457999999 59999999988864 333 1 2444 3 55677777776666532 1 1233 34556789999
Q ss_pred cEEEEec
Q 019713 174 EWALLIG 180 (337)
Q Consensus 174 DvVIita 180 (337)
|+||.+-
T Consensus 190 DiVitaT 196 (304)
T PRK07340 190 DLVVTAT 196 (304)
T ss_pred CEEEEcc
Confidence 9998763
No 317
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=94.03 E-value=0.13 Score=48.92 Aligned_cols=71 Identities=18% Similarity=0.218 Sum_probs=41.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEE-eccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCC
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALK-LLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~-L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dA 173 (337)
+++||+||| .|.||..++..|... ..+ +.+. ++ |++.++.+..+..+. .....++..+.+.++
T Consensus 5 ~~irIGIIG-~G~IG~~~a~~L~~~-~~~----~el~aV~--dr~~~~a~~~a~~~g--------~~~~~~~~eell~~~ 68 (271)
T PRK13302 5 PELRVAIAG-LGAIGKAIAQALDRG-LPG----LTLSAVA--VRDPQRHADFIWGLR--------RPPPVVPLDQLATHA 68 (271)
T ss_pred CeeEEEEEC-ccHHHHHHHHHHHhc-CCC----eEEEEEE--CCCHHHHHHHHHhcC--------CCcccCCHHHHhcCC
Confidence 458999999 599999999888764 111 2222 23 444455443322111 011223444556889
Q ss_pred cEEEEecc
Q 019713 174 EWALLIGA 181 (337)
Q Consensus 174 DvVIitag 181 (337)
|+|+++..
T Consensus 69 D~Vvi~tp 76 (271)
T PRK13302 69 DIVVEAAP 76 (271)
T ss_pred CEEEECCC
Confidence 99999863
No 318
>PRK09135 pteridine reductase; Provisional
Probab=94.03 E-value=0.43 Score=43.05 Aligned_cols=26 Identities=19% Similarity=0.142 Sum_probs=23.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.++|.|+||+|.+|++++..|+..+.
T Consensus 6 ~~~vlItGa~g~iG~~l~~~l~~~g~ 31 (249)
T PRK09135 6 AKVALITGGARRIGAAIARTLHAAGY 31 (249)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC
Confidence 36899999999999999999998764
No 319
>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
Probab=94.02 E-value=0.27 Score=47.11 Aligned_cols=104 Identities=12% Similarity=0.122 Sum_probs=55.2
Q ss_pred EEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccC-CCcEEE
Q 019713 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFE-DAEWAL 177 (337)
Q Consensus 99 I~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~-dADvVI 177 (337)
|.|.||+|.||+++...|..++. .|.+ +-++..+...... ..+..-....+... ++|+||
T Consensus 1 IliTGgTGlIG~~L~~~L~~~gh-----~v~i----ltR~~~~~~~~~~----------~~v~~~~~~~~~~~~~~DavI 61 (297)
T COG1090 1 ILITGGTGLIGRALTARLRKGGH-----QVTI----LTRRPPKASQNLH----------PNVTLWEGLADALTLGIDAVI 61 (297)
T ss_pred CeEeccccchhHHHHHHHHhCCC-----eEEE----EEcCCcchhhhcC----------ccccccchhhhcccCCCCEEE
Confidence 67999999999999999988764 2433 1233333332111 01111011111222 799999
Q ss_pred EecccCC--CCCC-ch-hhhHHhhHHHHHHHHHHHHhhc-CCCeEEEEeC
Q 019713 178 LIGAKPR--GPGM-ER-AGLLDINGQIFAEQGKALNAVA-SRNVKVIVVG 222 (337)
Q Consensus 178 itag~pr--k~g~-~R-~dll~~N~~I~~~i~~~I~~~a-~p~aivIvvt 222 (337)
..||.|- +.+- .+ ..+...-+..-+.+.+.|++.- .|. .+|..|
T Consensus 62 NLAG~~I~~rrWt~~~K~~i~~SRi~~T~~L~e~I~~~~~~P~-~~isaS 110 (297)
T COG1090 62 NLAGEPIAERRWTEKQKEEIRQSRINTTEKLVELIAASETKPK-VLISAS 110 (297)
T ss_pred ECCCCccccccCCHHHHHHHHHHHhHHHHHHHHHHHhccCCCc-EEEecc
Confidence 9999873 2222 22 2233444555556666666431 344 334444
No 320
>PRK12828 short chain dehydrogenase; Provisional
Probab=94.02 E-value=0.48 Score=42.35 Aligned_cols=26 Identities=23% Similarity=0.158 Sum_probs=23.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.++|.|+||+|.+|.+++..|+..+.
T Consensus 7 ~k~vlItGatg~iG~~la~~l~~~G~ 32 (239)
T PRK12828 7 GKVVAITGGFGGLGRATAAWLAARGA 32 (239)
T ss_pred CCEEEEECCCCcHhHHHHHHHHHCCC
Confidence 46899999999999999999998775
No 321
>PLN02253 xanthoxin dehydrogenase
Probab=94.01 E-value=0.26 Score=45.82 Aligned_cols=25 Identities=16% Similarity=0.097 Sum_probs=22.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
++|.|+||+|.+|.+++..|+..|.
T Consensus 19 k~~lItGas~gIG~~la~~l~~~G~ 43 (280)
T PLN02253 19 KVALVTGGATGIGESIVRLFHKHGA 43 (280)
T ss_pred CEEEEECCCchHHHHHHHHHHHcCC
Confidence 5799999999999999999998774
No 322
>PRK07109 short chain dehydrogenase; Provisional
Probab=94.00 E-value=0.94 Score=43.97 Aligned_cols=45 Identities=20% Similarity=0.281 Sum_probs=32.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHh
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~ 150 (337)
.+|.|+||+|.||.+++..|+..|. .|.+ .+++++.++....++.
T Consensus 9 k~vlITGas~gIG~~la~~la~~G~-----~Vvl----~~R~~~~l~~~~~~l~ 53 (334)
T PRK07109 9 QVVVITGASAGVGRATARAFARRGA-----KVVL----LARGEEGLEALAAEIR 53 (334)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHHH
Confidence 5799999999999999999998775 2444 2455556655544454
No 323
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=93.95 E-value=1.6 Score=39.44 Aligned_cols=25 Identities=20% Similarity=0.239 Sum_probs=22.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
++|.|+||+|.+|.+++..|+..+.
T Consensus 5 ~~vlItGa~g~iG~~~a~~l~~~g~ 29 (250)
T PRK08063 5 KVALVTGSSRGIGKAIALRLAEEGY 29 (250)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCC
Confidence 5899999999999999999998774
No 324
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=93.94 E-value=0.33 Score=43.97 Aligned_cols=24 Identities=17% Similarity=0.379 Sum_probs=22.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.||.|||+ |.+|+.++..|+..|+
T Consensus 20 s~VlviG~-gglGsevak~L~~~GV 43 (198)
T cd01485 20 AKVLIIGA-GALGAEIAKNLVLAGI 43 (198)
T ss_pred CcEEEECC-CHHHHHHHHHHHHcCC
Confidence 69999995 8899999999999998
No 325
>PRK06198 short chain dehydrogenase; Provisional
Probab=93.93 E-value=1.3 Score=40.48 Aligned_cols=26 Identities=12% Similarity=0.023 Sum_probs=23.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.++|.|+||+|.+|..++..|+..+.
T Consensus 6 ~k~vlItGa~g~iG~~la~~l~~~G~ 31 (260)
T PRK06198 6 GKVALVTGGTQGLGAAIARAFAERGA 31 (260)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHCCC
Confidence 36899999999999999999988764
No 326
>PRK08251 short chain dehydrogenase; Provisional
Probab=93.92 E-value=1.7 Score=39.39 Aligned_cols=25 Identities=20% Similarity=0.239 Sum_probs=22.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
+++.|+||+|.+|.+++..|+..+.
T Consensus 3 k~vlItGas~giG~~la~~l~~~g~ 27 (248)
T PRK08251 3 QKILITGASSGLGAGMAREFAAKGR 27 (248)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCC
Confidence 4799999999999999999998774
No 327
>PRK06500 short chain dehydrogenase; Provisional
Probab=93.88 E-value=0.28 Score=44.44 Aligned_cols=25 Identities=12% Similarity=0.074 Sum_probs=22.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
++|.|+||+|.+|.+++..|+..+.
T Consensus 7 k~vlItGasg~iG~~la~~l~~~g~ 31 (249)
T PRK06500 7 KTALITGGTSGIGLETARQFLAEGA 31 (249)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCC
Confidence 5899999999999999999998775
No 328
>PRK12320 hypothetical protein; Provisional
Probab=93.87 E-value=0.13 Score=55.18 Aligned_cols=100 Identities=13% Similarity=0.114 Sum_probs=54.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEec-CcccccCCCcE
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI-NPYELFEDAEW 175 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t-~~~eal~dADv 175 (337)
|||.|+||+|++|++++..|...+. .|.. + ++..... .+....+. ...+.. ...+.++++|+
T Consensus 1 MkILVTGAaGFIGs~La~~Ll~~G~-----~Vi~--l--dr~~~~~-------~~~~ve~v-~~Dl~d~~l~~al~~~D~ 63 (699)
T PRK12320 1 MQILVTDATGAVGRSVTRQLIAAGH-----TVSG--I--AQHPHDA-------LDPRVDYV-CASLRNPVLQELAGEADA 63 (699)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCC-----EEEE--E--eCChhhc-------ccCCceEE-EccCCCHHHHHHhcCCCE
Confidence 5899999999999999999988764 2332 2 2221110 00000000 000110 11245678999
Q ss_pred EEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 019713 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (337)
Q Consensus 176 VIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvt 222 (337)
||.+++... . +-...|..-...+.+.+++. ++++|.+|
T Consensus 64 VIHLAa~~~--~----~~~~vNv~Gt~nLleAA~~~---GvRiV~~S 101 (699)
T PRK12320 64 VIHLAPVDT--S----APGGVGITGLAHVANAAARA---GARLLFVS 101 (699)
T ss_pred EEEcCccCc--c----chhhHHHHHHHHHHHHHHHc---CCeEEEEE
Confidence 998876421 1 01135666667777777664 24566665
No 329
>PRK13535 erythrose 4-phosphate dehydrogenase; Provisional
Probab=93.87 E-value=0.22 Score=49.01 Aligned_cols=25 Identities=24% Similarity=0.389 Sum_probs=21.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
++||+|.|+ |.||..+...|...+.
T Consensus 1 ~~~IaInGf-GrIGR~~lr~l~e~~~ 25 (336)
T PRK13535 1 TIRVAINGF-GRIGRNVLRALYESGR 25 (336)
T ss_pred CeEEEEECc-CHHHHHHHHHHHhcCC
Confidence 469999996 9999999998877653
No 330
>PRK05876 short chain dehydrogenase; Provisional
Probab=93.84 E-value=0.87 Score=42.70 Aligned_cols=45 Identities=16% Similarity=0.093 Sum_probs=31.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHh
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~ 150 (337)
+.+.|+||+|.+|.+++..|+..|. .|.+ . +++.+.++....++.
T Consensus 7 k~vlVTGas~gIG~ala~~La~~G~-----~Vv~--~--~r~~~~l~~~~~~l~ 51 (275)
T PRK05876 7 RGAVITGGASGIGLATGTEFARRGA-----RVVL--G--DVDKPGLRQAVNHLR 51 (275)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCC-----EEEE--E--eCCHHHHHHHHHHHH
Confidence 4699999999999999999998875 2443 2 344455554444443
No 331
>PRK06125 short chain dehydrogenase; Provisional
Probab=93.83 E-value=1.6 Score=39.96 Aligned_cols=117 Identities=14% Similarity=0.061 Sum_probs=61.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccC-C-cccEEEecC-----ccc
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFP-L-LREVKIGIN-----PYE 168 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~-~-~~~v~i~t~-----~~e 168 (337)
.++|.|+||+|.+|.+++..|+..|. .|.+ . +++.++++....++...... . .....++.. -.+
T Consensus 7 ~k~vlItG~~~giG~~ia~~l~~~G~-----~V~~--~--~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~ 77 (259)
T PRK06125 7 GKRVLITGASKGIGAAAAEAFAAEGC-----HLHL--V--ARDADALEALAADLRAAHGVDVAVHALDLSSPEAREQLAA 77 (259)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHcCC-----EEEE--E--eCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHH
Confidence 36899999999999999999998775 2443 2 34445554443334321100 0 001111100 012
Q ss_pred ccCCCcEEEEecccCC-CCC--Cch---hhhHHhhHH----HHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 169 LFEDAEWALLIGAKPR-GPG--MER---AGLLDINGQ----IFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 169 al~dADvVIitag~pr-k~g--~~R---~dll~~N~~----I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
.+...|++|..+|... .+- .+. ...+..|.. +.+.+.+.+.+. ..+.+++++.
T Consensus 78 ~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~--~~g~iv~iss 140 (259)
T PRK06125 78 EAGDIDILVNNAGAIPGGGLDDVDDAAWRAGWELKVFGYIDLTRLAYPRMKAR--GSGVIVNVIG 140 (259)
T ss_pred HhCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc--CCcEEEEecC
Confidence 3467899999887532 111 111 122444433 445555666553 3346666653
No 332
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=93.83 E-value=0.12 Score=52.13 Aligned_cols=73 Identities=15% Similarity=0.166 Sum_probs=48.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcE
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADv 175 (337)
..||.|||| |.+|..++..|...|.- .|.+ ..++.++++..+.++.. ..+....+.++.+.++|+
T Consensus 181 ~kkvlviGa-G~~a~~va~~L~~~g~~----~I~V----~nRt~~ra~~La~~~~~------~~~~~~~~l~~~l~~aDi 245 (414)
T PRK13940 181 SKNVLIIGA-GQTGELLFRHVTALAPK----QIML----ANRTIEKAQKITSAFRN------ASAHYLSELPQLIKKADI 245 (414)
T ss_pred CCEEEEEcC-cHHHHHHHHHHHHcCCC----EEEE----ECCCHHHHHHHHHHhcC------CeEecHHHHHHHhccCCE
Confidence 368999995 99999999999887762 2444 35666666655443321 112222344678999999
Q ss_pred EEEecccC
Q 019713 176 ALLIGAKP 183 (337)
Q Consensus 176 VIitag~p 183 (337)
||.+-+.|
T Consensus 246 VI~aT~a~ 253 (414)
T PRK13940 246 IIAAVNVL 253 (414)
T ss_pred EEECcCCC
Confidence 99876655
No 333
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=93.83 E-value=0.94 Score=41.34 Aligned_cols=47 Identities=19% Similarity=0.157 Sum_probs=32.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHh
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~ 150 (337)
+.++|.|+||+|.+|..++..|+..|. .|.+ + +++.+.++....++.
T Consensus 10 ~~k~ilItGas~~IG~~la~~l~~~G~-----~v~~--~--~r~~~~~~~~~~~~~ 56 (256)
T PRK06124 10 AGQVALVTGSARGLGFEIARALAGAGA-----HVLV--N--GRNAATLEAAVAALR 56 (256)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcCC-----eEEE--E--eCCHHHHHHHHHHHH
Confidence 457899999999999999999998775 2444 2 344455554444443
No 334
>PRK06940 short chain dehydrogenase; Provisional
Probab=93.81 E-value=0.77 Score=43.02 Aligned_cols=19 Identities=26% Similarity=0.396 Sum_probs=14.8
Q ss_pred EEEEEcCCCchHHHHHHHHH
Q 019713 98 NIAVSGAAGMIANHLLFKLA 117 (337)
Q Consensus 98 KI~IIGAaG~VG~~la~~L~ 117 (337)
.+.|+| +|.+|.+++..|+
T Consensus 4 ~~lItG-a~gIG~~la~~l~ 22 (275)
T PRK06940 4 VVVVIG-AGGIGQAIARRVG 22 (275)
T ss_pred EEEEEC-CChHHHHHHHHHh
Confidence 345566 5899999999985
No 335
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=93.79 E-value=0.36 Score=42.21 Aligned_cols=75 Identities=17% Similarity=0.059 Sum_probs=44.1
Q ss_pred CCEEEEEcC-CCchHHHHHHHHHHcCCCCCCCceEEEeccccch--hh--HHHhHHHhHhhhccCCcccEEEecCccccc
Q 019713 96 MVNIAVSGA-AGMIANHLLFKLAAGEVLGPDQPIALKLLGSERS--LQ--ALEGVAMELEDSLFPLLREVKIGINPYELF 170 (337)
Q Consensus 96 ~~KI~IIGA-aG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~--~~--~l~g~a~DL~d~~~~~~~~v~i~t~~~eal 170 (337)
-.||++||= -+.|..+++..+..-|. .+++...+.. +. ..-..+.+.... ...+++++.+..+++
T Consensus 2 gl~i~~vGD~~~rv~~Sl~~~~~~~g~-------~~~~~~P~~~~~~~~~~~~~~~~~~~~~---~g~~i~~~~~~~e~l 71 (158)
T PF00185_consen 2 GLKIAYVGDGHNRVAHSLIELLAKFGM-------EVVLIAPEGLRYPPDPEVLEKAKKNAKK---NGGKITITDDIEEAL 71 (158)
T ss_dssp TEEEEEESSTTSHHHHHHHHHHHHTTS-------EEEEESSGGGGGSHHHHHHHHHHHHHHH---HTTEEEEESSHHHHH
T ss_pred CCEEEEECCCCChHHHHHHHHHHHcCC-------EEEEECCCcccCCCCHHHHHHHHHHHHH---hCCCeEEEeCHHHhc
Confidence 369999994 36899999988887664 2333332221 11 011111111111 124678887777999
Q ss_pred CCCcEEEEec
Q 019713 171 EDAEWALLIG 180 (337)
Q Consensus 171 ~dADvVIita 180 (337)
++||+|....
T Consensus 72 ~~aDvvy~~~ 81 (158)
T PF00185_consen 72 KGADVVYTDR 81 (158)
T ss_dssp TT-SEEEEES
T ss_pred CCCCEEEEcC
Confidence 9999988864
No 336
>PRK06949 short chain dehydrogenase; Provisional
Probab=93.76 E-value=1.1 Score=40.71 Aligned_cols=26 Identities=19% Similarity=0.112 Sum_probs=23.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.++|.|+||+|.||.+++..|+..+.
T Consensus 9 ~k~ilItGasg~IG~~~a~~l~~~G~ 34 (258)
T PRK06949 9 GKVALVTGASSGLGARFAQVLAQAGA 34 (258)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC
Confidence 36899999999999999999998764
No 337
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=93.75 E-value=0.31 Score=46.75 Aligned_cols=105 Identities=15% Similarity=0.121 Sum_probs=40.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCc----ccccC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINP----YELFE 171 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~----~eal~ 171 (337)
+.||+.|| +|.+-.+........+. + ..++-+|+|. +..+ .+..+-.....+..++++.+.+ ..+++
T Consensus 121 p~rVaFIG-SGPLPlT~i~la~~~~~-~----~~v~~iD~d~--~A~~-~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~ 191 (276)
T PF03059_consen 121 PSRVAFIG-SGPLPLTSIVLAKQHGP-G----ARVHNIDIDP--EANE-LARRLVASDLGLSKRMSFITADVLDVTYDLK 191 (276)
T ss_dssp --EEEEE----SS-HHHHHHH--HTT-------EEEEEESSH--HHHH-HHHHHHH---HH-SSEEEEES-GGGG-GG--
T ss_pred cceEEEEc-CCCcchHHHHHHHHhCC-C----CeEEEEeCCH--HHHH-HHHHHHhhcccccCCeEEEecchhccccccc
Confidence 46999999 69987775443322221 1 2333444443 3222 2222222111233455554333 24578
Q ss_pred CCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEe
Q 019713 172 DAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVV 221 (337)
Q Consensus 172 dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvv 221 (337)
+.|+|++++=+ ||+. +-..++.+.|.++..|+++|++=
T Consensus 192 ~~DvV~lAalV----g~~~--------e~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 192 EYDVVFLAALV----GMDA--------EPKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp --SEEEE-TT-----S------------SHHHHHHHHHHHS-TTSEEEEE
T ss_pred cCCEEEEhhhc----cccc--------chHHHHHHHHHhhCCCCcEEEEe
Confidence 89999998632 2221 22344555555555678876553
No 338
>PRK06823 ornithine cyclodeaminase; Validated
Probab=93.74 E-value=0.31 Score=47.51 Aligned_cols=73 Identities=19% Similarity=0.130 Sum_probs=49.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCc
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dAD 174 (337)
...+++||| +|..+..-+..+..-.-+. .|.+ + +++.++++..+..+++. ..++.+..+..+++++||
T Consensus 127 d~~~l~iiG-~G~qA~~~~~a~~~v~~i~---~v~v--~--~r~~~~a~~~~~~~~~~----~~~v~~~~~~~~av~~AD 194 (315)
T PRK06823 127 HVSAIGIVG-TGIQARMQLMYLKNVTDCR---QLWV--W--GRSETALEEYRQYAQAL----GFAVNTTLDAAEVAHAAN 194 (315)
T ss_pred CCCEEEEEC-CcHHHHHHHHHHHhcCCCC---EEEE--E--CCCHHHHHHHHHHHHhc----CCcEEEECCHHHHhcCCC
Confidence 357999999 5999988777766533222 3554 3 56777777666545432 135666666788999999
Q ss_pred EEEEe
Q 019713 175 WALLI 179 (337)
Q Consensus 175 vVIit 179 (337)
+|+.+
T Consensus 195 IV~ta 199 (315)
T PRK06823 195 LIVTT 199 (315)
T ss_pred EEEEe
Confidence 99875
No 339
>PRK08223 hypothetical protein; Validated
Probab=93.74 E-value=0.3 Score=47.06 Aligned_cols=25 Identities=24% Similarity=0.335 Sum_probs=22.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
..||.|||+ |-+|+.++..|+..|+
T Consensus 27 ~s~VlIvG~-GGLGs~va~~LA~aGV 51 (287)
T PRK08223 27 NSRVAIAGL-GGVGGIHLLTLARLGI 51 (287)
T ss_pred cCCEEEECC-CHHHHHHHHHHHHhCC
Confidence 359999995 9999999999999998
No 340
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=93.66 E-value=1.3 Score=42.95 Aligned_cols=24 Identities=25% Similarity=0.529 Sum_probs=19.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHc
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAG 119 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~ 119 (337)
+++||+||| +|++|..++..+...
T Consensus 3 ~klrVAIIG-tG~IGt~hm~~l~~~ 26 (302)
T PRK08300 3 SKLKVAIIG-SGNIGTDLMIKILRS 26 (302)
T ss_pred CCCeEEEEc-CcHHHHHHHHHHhcC
Confidence 457999999 699999988777653
No 341
>PRK07589 ornithine cyclodeaminase; Validated
Probab=93.66 E-value=0.24 Score=48.89 Aligned_cols=73 Identities=16% Similarity=0.089 Sum_probs=49.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcE
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADv 175 (337)
..+++||| +|..+..-+..++.-.-+ +.|.+ + +++.++++..+.++.+. ..++.+..+..+++++||+
T Consensus 129 a~~l~iiG-aG~QA~~~l~a~~~vr~i---~~V~v--~--~r~~~~a~~~~~~~~~~----~~~v~~~~~~~~av~~ADI 196 (346)
T PRK07589 129 SRTMALIG-NGAQSEFQALAFKALLGI---EEIRL--Y--DIDPAATAKLARNLAGP----GLRIVACRSVAEAVEGADI 196 (346)
T ss_pred CcEEEEEC-CcHHHHHHHHHHHHhCCc---eEEEE--E--eCCHHHHHHHHHHHHhc----CCcEEEeCCHHHHHhcCCE
Confidence 57899999 599988776655542212 23444 3 56777877777777641 2256666677899999999
Q ss_pred EEEec
Q 019713 176 ALLIG 180 (337)
Q Consensus 176 VIita 180 (337)
|+.+-
T Consensus 197 IvtaT 201 (346)
T PRK07589 197 ITTVT 201 (346)
T ss_pred EEEec
Confidence 98753
No 342
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=93.65 E-value=1.2 Score=41.33 Aligned_cols=26 Identities=15% Similarity=0.262 Sum_probs=23.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.+++.|+||+|.+|.+++..|+..|.
T Consensus 10 ~k~vlVtGas~giG~~ia~~l~~~G~ 35 (278)
T PRK08277 10 GKVAVITGGGGVLGGAMAKELARAGA 35 (278)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC
Confidence 36799999999999999999998775
No 343
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=93.62 E-value=0.31 Score=45.62 Aligned_cols=25 Identities=24% Similarity=0.211 Sum_probs=22.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
..||.|+|+ |.+|+.++..|+..|+
T Consensus 24 ~~~VlvvG~-GglGs~va~~La~~Gv 48 (240)
T TIGR02355 24 ASRVLIVGL-GGLGCAASQYLAAAGV 48 (240)
T ss_pred CCcEEEECc-CHHHHHHHHHHHHcCC
Confidence 369999995 9999999999999887
No 344
>PRK13243 glyoxylate reductase; Reviewed
Probab=93.61 E-value=0.25 Score=48.39 Aligned_cols=98 Identities=16% Similarity=0.144 Sum_probs=55.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcEE
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADvV 176 (337)
++|+||| .|.||..+|..|..-|. .|. .+| +..+... +... . +.. .+..+.+++||+|
T Consensus 151 ktvgIiG-~G~IG~~vA~~l~~~G~-----~V~--~~d--~~~~~~~----~~~~---~----~~~-~~l~ell~~aDiV 208 (333)
T PRK13243 151 KTIGIIG-FGRIGQAVARRAKGFGM-----RIL--YYS--RTRKPEA----EKEL---G----AEY-RPLEELLRESDFV 208 (333)
T ss_pred CEEEEEC-cCHHHHHHHHHHHHCCC-----EEE--EEC--CCCChhh----HHHc---C----CEe-cCHHHHHhhCCEE
Confidence 6999999 59999999999876554 243 233 3322111 0110 1 111 2456788999999
Q ss_pred EEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC--CchhHHH
Q 019713 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN--PCNTNAL 230 (337)
Q Consensus 177 Iitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtN--Pvd~~t~ 230 (337)
++... ..+ .+..++.+ +.+... .+++++|+++= .+|.-+.
T Consensus 209 ~l~lP--~t~---------~T~~~i~~--~~~~~m-k~ga~lIN~aRg~~vd~~aL 250 (333)
T PRK13243 209 SLHVP--LTK---------ETYHMINE--ERLKLM-KPTAILVNTARGKVVDTKAL 250 (333)
T ss_pred EEeCC--CCh---------HHhhccCH--HHHhcC-CCCeEEEECcCchhcCHHHH
Confidence 99752 111 11122211 234443 68899999883 4555443
No 345
>PRK05855 short chain dehydrogenase; Validated
Probab=93.59 E-value=0.81 Score=46.74 Aligned_cols=113 Identities=12% Similarity=0.062 Sum_probs=62.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEe-cC--ccc-----
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN--PYE----- 168 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-t~--~~e----- 168 (337)
+++.|+||+|.+|.+++..|+..|. .|.+ . +++.+.++..+.++.... .++... .| +.+
T Consensus 316 ~~~lv~G~s~giG~~~a~~l~~~G~-----~v~~--~--~r~~~~~~~~~~~~~~~~----~~~~~~~~Dv~~~~~~~~~ 382 (582)
T PRK05855 316 KLVVVTGAGSGIGRETALAFAREGA-----EVVA--S--DIDEAAAERTAELIRAAG----AVAHAYRVDVSDADAMEAF 382 (582)
T ss_pred CEEEEECCcCHHHHHHHHHHHHCCC-----EEEE--E--eCCHHHHHHHHHHHHhcC----CeEEEEEcCCCCHHHHHHH
Confidence 6899999999999999999998775 2443 2 445555554444443211 011111 11 111
Q ss_pred ------ccCCCcEEEEecccCCCCC---Cchh---hhHHhhH----HHHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 169 ------LFEDAEWALLIGAKPRGPG---MERA---GLLDING----QIFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 169 ------al~dADvVIitag~prk~g---~~R~---dll~~N~----~I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
.+...|++|..+|...... .+.. ..+..|. .+.+...+.+.+. ..++.||+++-
T Consensus 383 ~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~-~~~g~iv~~sS 452 (582)
T PRK05855 383 AEWVRAEHGVPDIVVNNAGIGMAGGFLDTSAEDWDRVLDVNLWGVIHGCRLFGRQMVER-GTGGHIVNVAS 452 (582)
T ss_pred HHHHHHhcCCCcEEEECCccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCCcEEEEECC
Confidence 1235799999988643211 1111 2344553 3444555556554 34456777664
No 346
>PRK05884 short chain dehydrogenase; Provisional
Probab=93.59 E-value=0.29 Score=44.39 Aligned_cols=25 Identities=12% Similarity=0.163 Sum_probs=22.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
||+.|+||+|.+|.+++..|+..+.
T Consensus 1 m~vlItGas~giG~~ia~~l~~~g~ 25 (223)
T PRK05884 1 VEVLVTGGDTDLGRTIAEGFRNDGH 25 (223)
T ss_pred CeEEEEeCCchHHHHHHHHHHHCCC
Confidence 4899999999999999999988764
No 347
>PRK06139 short chain dehydrogenase; Provisional
Probab=93.58 E-value=1.3 Score=43.12 Aligned_cols=46 Identities=24% Similarity=0.255 Sum_probs=33.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHh
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~ 150 (337)
..+|.|+||+|.||.+++..|+..|. .|.+ .++++++++....++.
T Consensus 7 ~k~vlITGAs~GIG~aia~~la~~G~-----~Vvl----~~R~~~~l~~~~~~~~ 52 (330)
T PRK06139 7 GAVVVITGASSGIGQATAEAFARRGA-----RLVL----AARDEEALQAVAEECR 52 (330)
T ss_pred CCEEEEcCCCCHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHHH
Confidence 35899999999999999999998875 2444 2455666665555554
No 348
>PRK08605 D-lactate dehydrogenase; Validated
Probab=93.57 E-value=0.16 Score=49.80 Aligned_cols=63 Identities=21% Similarity=0.073 Sum_probs=37.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcE
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADv 175 (337)
-+||+||| .|.||..+|..|+. + ++ ..+..+| +..... .... +....+..+.+++||+
T Consensus 146 g~~VgIIG-~G~IG~~vA~~L~~-~-~g----~~V~~~d--~~~~~~------~~~~-------~~~~~~l~ell~~aDv 203 (332)
T PRK08605 146 DLKVAVIG-TGRIGLAVAKIFAK-G-YG----SDVVAYD--PFPNAK------AATY-------VDYKDTIEEAVEGADI 203 (332)
T ss_pred CCEEEEEC-CCHHHHHHHHHHHh-c-CC----CEEEEEC--CCccHh------HHhh-------ccccCCHHHHHHhCCE
Confidence 36899999 59999999999853 2 22 1222333 322211 0100 1122345678899999
Q ss_pred EEEec
Q 019713 176 ALLIG 180 (337)
Q Consensus 176 VIita 180 (337)
|+++.
T Consensus 204 Ivl~l 208 (332)
T PRK08605 204 VTLHM 208 (332)
T ss_pred EEEeC
Confidence 99875
No 349
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=93.54 E-value=0.24 Score=43.34 Aligned_cols=25 Identities=20% Similarity=0.143 Sum_probs=21.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.+||.|||| |.||...+..|...+.
T Consensus 13 ~~~vlVvGG-G~va~rka~~Ll~~ga 37 (157)
T PRK06719 13 NKVVVIIGG-GKIAYRKASGLKDTGA 37 (157)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCC
Confidence 469999996 9999999999988664
No 350
>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.
Probab=93.50 E-value=0.45 Score=46.66 Aligned_cols=26 Identities=27% Similarity=0.462 Sum_probs=22.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVL 122 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~ 122 (337)
+||+|+||+|.+|..++..|...+.+
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~~~~ 26 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKHPYF 26 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCc
Confidence 58999999999999999988776543
No 351
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=93.49 E-value=0.39 Score=45.63 Aligned_cols=72 Identities=18% Similarity=0.187 Sum_probs=47.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcE
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADv 175 (337)
..+|.|+|| |.+|.+++..|...+.. .|.+ .+++.++++..+.++.... .+.+..+..+.+.++|+
T Consensus 123 ~k~vlVlGa-Gg~a~ai~~aL~~~g~~----~V~v----~~R~~~~a~~l~~~~~~~~-----~~~~~~~~~~~~~~~Di 188 (278)
T PRK00258 123 GKRILILGA-GGAARAVILPLLDLGVA----EITI----VNRTVERAEELAKLFGALG-----KAELDLELQEELADFDL 188 (278)
T ss_pred CCEEEEEcC-cHHHHHHHHHHHHcCCC----EEEE----EeCCHHHHHHHHHHhhhcc-----ceeecccchhccccCCE
Confidence 468999995 99999999999977752 2544 3566677766555443211 12221133467889999
Q ss_pred EEEecc
Q 019713 176 ALLIGA 181 (337)
Q Consensus 176 VIitag 181 (337)
||.+-.
T Consensus 189 vInaTp 194 (278)
T PRK00258 189 IINATS 194 (278)
T ss_pred EEECCc
Confidence 998753
No 352
>PRK07063 short chain dehydrogenase; Provisional
Probab=93.48 E-value=1.4 Score=40.29 Aligned_cols=46 Identities=22% Similarity=0.140 Sum_probs=32.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHh
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~ 150 (337)
.++|.|+||+|.+|.+++..|+..|. .|.+ + +++.+.++..+.++.
T Consensus 7 ~k~vlVtGas~gIG~~~a~~l~~~G~-----~vv~--~--~r~~~~~~~~~~~~~ 52 (260)
T PRK07063 7 GKVALVTGAAQGIGAAIARAFAREGA-----AVAL--A--DLDAALAERAAAAIA 52 (260)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-----EEEE--E--eCCHHHHHHHHHHHH
Confidence 35799999999999999999998775 2444 2 345555555444444
No 353
>PRK07062 short chain dehydrogenase; Provisional
Probab=93.45 E-value=1.8 Score=39.84 Aligned_cols=45 Identities=18% Similarity=0.161 Sum_probs=31.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHh
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~ 150 (337)
+.+.|+||+|.+|.+++..|+..|. .|.+ . +++.++++....++.
T Consensus 9 k~~lItGas~giG~~ia~~l~~~G~-----~V~~--~--~r~~~~~~~~~~~~~ 53 (265)
T PRK07062 9 RVAVVTGGSSGIGLATVELLLEAGA-----SVAI--C--GRDEERLASAEARLR 53 (265)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCC-----eEEE--E--eCCHHHHHHHHHHHH
Confidence 5799999999999999999998775 2444 2 345555554444443
No 354
>PRK05875 short chain dehydrogenase; Provisional
Probab=93.45 E-value=1.8 Score=40.03 Aligned_cols=26 Identities=19% Similarity=0.135 Sum_probs=23.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.++|.|+||+|.+|.+++..|+..|.
T Consensus 7 ~k~vlItGasg~IG~~la~~l~~~G~ 32 (276)
T PRK05875 7 DRTYLVTGGGSGIGKGVAAGLVAAGA 32 (276)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC
Confidence 36899999999999999999998775
No 355
>PRK09242 tropinone reductase; Provisional
Probab=93.44 E-value=2.3 Score=38.87 Aligned_cols=115 Identities=14% Similarity=0.136 Sum_probs=61.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEe-cC--c------
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG-IN--P------ 166 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~-t~--~------ 166 (337)
.+++.|+||+|.||.+++..|+..|. .|.+ + +++.+.++....++.+.. + ..++... .| +
T Consensus 9 ~k~~lItGa~~gIG~~~a~~l~~~G~-----~v~~--~--~r~~~~~~~~~~~l~~~~-~-~~~~~~~~~Dl~~~~~~~~ 77 (257)
T PRK09242 9 GQTALITGASKGIGLAIAREFLGLGA-----DVLI--V--ARDADALAQARDELAEEF-P-EREVHGLAADVSDDEDRRA 77 (257)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHcCC-----EEEE--E--eCCHHHHHHHHHHHHhhC-C-CCeEEEEECCCCCHHHHHH
Confidence 35899999999999999999998775 2443 2 344455554444444321 1 0112111 11 1
Q ss_pred -----ccccCCCcEEEEecccCC-CC--CCchh---hhHHhhHH----HHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 167 -----YELFEDAEWALLIGAKPR-GP--GMERA---GLLDINGQ----IFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 167 -----~eal~dADvVIitag~pr-k~--g~~R~---dll~~N~~----I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
.+.+...|+||..+|... .+ ..+.. ..+..|.. +.+...+.+.+. +.+.+|+++-
T Consensus 78 ~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~--~~~~ii~~sS 147 (257)
T PRK09242 78 ILDWVEDHWDGLHILVNNAGGNIRKAAIDYTEDEWRGIFETNLFSAFELSRYAHPLLKQH--ASSAIVNIGS 147 (257)
T ss_pred HHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhc--CCceEEEECc
Confidence 123456799999887521 11 11111 22444433 444444555543 3446666654
No 356
>PRK06924 short chain dehydrogenase; Provisional
Probab=93.43 E-value=0.17 Score=46.04 Aligned_cols=26 Identities=12% Similarity=0.206 Sum_probs=23.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
|++|.|+||+|.+|++++..|+..+.
T Consensus 1 ~k~vlItGasggiG~~ia~~l~~~g~ 26 (251)
T PRK06924 1 MRYVIITGTSQGLGEAIANQLLEKGT 26 (251)
T ss_pred CcEEEEecCCchHHHHHHHHHHhcCC
Confidence 35799999999999999999998775
No 357
>TIGR01746 Thioester-redct thioester reductase domain. It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold.
Probab=93.42 E-value=1.3 Score=42.14 Aligned_cols=23 Identities=26% Similarity=0.450 Sum_probs=21.0
Q ss_pred EEEEEcCCCchHHHHHHHHHHcC
Q 019713 98 NIAVSGAAGMIANHLLFKLAAGE 120 (337)
Q Consensus 98 KI~IIGAaG~VG~~la~~L~~~~ 120 (337)
+|.|+||+|++|++++..|+..+
T Consensus 1 ~vlvtGatG~lG~~l~~~L~~~g 23 (367)
T TIGR01746 1 TVLLTGATGFLGAYLLEELLRRS 23 (367)
T ss_pred CEEEeccchHHHHHHHHHHHhCC
Confidence 58899999999999999998876
No 358
>PRK06179 short chain dehydrogenase; Provisional
Probab=93.40 E-value=0.76 Score=42.38 Aligned_cols=26 Identities=27% Similarity=0.128 Sum_probs=23.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
..+|.|+||+|.+|.+++..|+..|.
T Consensus 4 ~~~vlVtGasg~iG~~~a~~l~~~g~ 29 (270)
T PRK06179 4 SKVALVTGASSGIGRATAEKLARAGY 29 (270)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCC
Confidence 45899999999999999999998774
No 359
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=93.39 E-value=0.75 Score=41.38 Aligned_cols=25 Identities=8% Similarity=0.117 Sum_probs=22.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.+|.|+||+|.+|+.++..|+..|.
T Consensus 6 ~~vlItGa~g~iG~~~a~~l~~~G~ 30 (238)
T PRK05786 6 KKVAIIGVSEGLGYAVAYFALKEGA 30 (238)
T ss_pred cEEEEECCCchHHHHHHHHHHHCCC
Confidence 5899999999999999999998775
No 360
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=93.38 E-value=0.16 Score=46.81 Aligned_cols=26 Identities=15% Similarity=0.184 Sum_probs=23.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.+++.|+||+|.+|.+++..|+..|.
T Consensus 5 ~k~vlItGas~gIG~~ia~~l~~~G~ 30 (262)
T TIGR03325 5 GEVVLVTGGASGLGRAIVDRFVAEGA 30 (262)
T ss_pred CcEEEEECCCChHHHHHHHHHHHCCC
Confidence 46899999999999999999998775
No 361
>PRK07035 short chain dehydrogenase; Provisional
Probab=93.36 E-value=0.9 Score=41.37 Aligned_cols=45 Identities=22% Similarity=0.187 Sum_probs=31.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHh
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~ 150 (337)
++|.|+||+|.+|.+++..|+..|. .|.+ + +++.+.++....++.
T Consensus 9 k~vlItGas~gIG~~l~~~l~~~G~-----~Vi~--~--~r~~~~~~~~~~~~~ 53 (252)
T PRK07035 9 KIALVTGASRGIGEAIAKLLAQQGA-----HVIV--S--SRKLDGCQAVADAIV 53 (252)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCC-----EEEE--E--eCCHHHHHHHHHHHH
Confidence 5799999999999999999998774 2443 2 344455544444443
No 362
>PLN03129 NADP-dependent malic enzyme; Provisional
Probab=93.36 E-value=0.15 Score=53.46 Aligned_cols=117 Identities=14% Similarity=0.132 Sum_probs=68.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHH-----cCCCCCCCceEEEeccccch--h---hHHHhHHHhHhhhccCCcccEEEecCc
Q 019713 97 VNIAVSGAAGMIANHLLFKLAA-----GEVLGPDQPIALKLLGSERS--L---QALEGVAMELEDSLFPLLREVKIGINP 166 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~-----~~l~~e~~~v~L~L~d~d~~--~---~~l~g~a~DL~d~~~~~~~~v~i~t~~ 166 (337)
.||.|.|| |..|-++|..|.. .|+-.++-.-.+.++|.+-- . +.+......+.+ +.....+.
T Consensus 322 ~riv~~GA-GsAgigia~ll~~~~~~~~Gls~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~fa~-------~~~~~~~L 393 (581)
T PLN03129 322 QRILFAGA-GEAGTGIAELIALAMSRQTGISEEEARKRIWLVDSKGLVTKSRKDSLQPFKKPFAH-------DHEPGASL 393 (581)
T ss_pred ceEEEECC-CHHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEcCCCeEeCCCCccChHHHHHHHh-------hcccCCCH
Confidence 59999995 9999999988876 35532211123455554310 1 112111111221 11112456
Q ss_pred ccccCC--CcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCc---hhHHHHHHHHC
Q 019713 167 YELFED--AEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC---NTNALICLKNA 236 (337)
Q Consensus 167 ~eal~d--ADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPv---d~~t~i~~k~s 236 (337)
.+++++ +|+.|=+.+.| | -+-+++.+.|.++ ++..+|.-.+||. +....-+++++
T Consensus 394 ~e~v~~vkptvLIG~S~~~---g-----------~Ft~evi~~Ma~~-~~rPIIFaLSNPt~~~E~~pe~a~~~T 453 (581)
T PLN03129 394 LEAVKAIKPTVLIGLSGVG---G-----------TFTKEVLEAMASL-NERPIIFALSNPTSKAECTAEEAYTWT 453 (581)
T ss_pred HHHHhccCCCEEEEecCCC---C-----------CCCHHHHHHHHhc-CCCCEEEECCCCCCCcCcCHHHHHHhh
Confidence 788998 89888655433 2 1224666777777 6888999999996 55555566654
No 363
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=93.34 E-value=0.29 Score=46.56 Aligned_cols=60 Identities=17% Similarity=0.223 Sum_probs=39.1
Q ss_pred EEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcEEEEec
Q 019713 101 VSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIG 180 (337)
Q Consensus 101 IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADvVIita 180 (337)
||| .|.||..++..|+..+. .|.+ + |++.++.+.. .+. ......+..++++++|+||++.
T Consensus 1 ~IG-lG~mG~~mA~~L~~~G~-----~V~v--~--dr~~~~~~~l----~~~------g~~~~~s~~~~~~~advVil~v 60 (288)
T TIGR01692 1 FIG-LGNMGGPMAANLLKAGH-----PVRV--F--DLFPDAVEEA----VAA------GAQAAASPAEAAEGADRVITML 60 (288)
T ss_pred CCc-ccHhHHHHHHHHHhCCC-----eEEE--E--eCCHHHHHHH----HHc------CCeecCCHHHHHhcCCEEEEeC
Confidence 589 59999999999998774 2443 3 4455554432 211 1223345567899999999875
No 364
>PRK12935 acetoacetyl-CoA reductase; Provisional
Probab=93.34 E-value=1.2 Score=40.28 Aligned_cols=26 Identities=23% Similarity=0.146 Sum_probs=23.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.++|.|+||+|.+|.+++..|+..+.
T Consensus 6 ~~~~lItG~s~~iG~~la~~l~~~g~ 31 (247)
T PRK12935 6 GKVAIVTGGAKGIGKAITVALAQEGA 31 (247)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCC
Confidence 36899999999999999999998774
No 365
>PRK07574 formate dehydrogenase; Provisional
Probab=93.33 E-value=0.46 Score=47.62 Aligned_cols=99 Identities=16% Similarity=0.223 Sum_probs=55.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcEE
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADvV 176 (337)
++|+||| .|.||..+|..|..-+. .| .-+ |+.....+ ..+.. .++...+..+.+++||+|
T Consensus 193 ktVGIvG-~G~IG~~vA~~l~~fG~-----~V--~~~--dr~~~~~~-----~~~~~-----g~~~~~~l~ell~~aDvV 252 (385)
T PRK07574 193 MTVGIVG-AGRIGLAVLRRLKPFDV-----KL--HYT--DRHRLPEE-----VEQEL-----GLTYHVSFDSLVSVCDVV 252 (385)
T ss_pred CEEEEEC-CCHHHHHHHHHHHhCCC-----EE--EEE--CCCCCchh-----hHhhc-----CceecCCHHHHhhcCCEE
Confidence 6899999 59999999998876443 13 223 33221111 11100 122223456788999999
Q ss_pred EEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC--CchhHH
Q 019713 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN--PCNTNA 229 (337)
Q Consensus 177 Iitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtN--Pvd~~t 229 (337)
++..... .++..++. .+.+... ++++++|+++- .+|.-+
T Consensus 253 ~l~lPlt-----------~~T~~li~--~~~l~~m-k~ga~lIN~aRG~iVDe~A 293 (385)
T PRK07574 253 TIHCPLH-----------PETEHLFD--ADVLSRM-KRGSYLVNTARGKIVDRDA 293 (385)
T ss_pred EEcCCCC-----------HHHHHHhC--HHHHhcC-CCCcEEEECCCCchhhHHH
Confidence 9875211 11222221 2334444 68899998874 345444
No 366
>PRK07074 short chain dehydrogenase; Provisional
Probab=93.32 E-value=1.8 Score=39.48 Aligned_cols=25 Identities=32% Similarity=0.303 Sum_probs=22.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.+|.|+||+|.+|..++..|+..+.
T Consensus 3 k~ilItGat~~iG~~la~~L~~~g~ 27 (257)
T PRK07074 3 RTALVTGAAGGIGQALARRFLAAGD 27 (257)
T ss_pred CEEEEECCcchHHHHHHHHHHHCCC
Confidence 4799999999999999999998764
No 367
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=93.31 E-value=0.16 Score=50.25 Aligned_cols=73 Identities=21% Similarity=0.286 Sum_probs=42.3
Q ss_pred EEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCc----ccccCCCc
Q 019713 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINP----YELFEDAE 174 (337)
Q Consensus 99 I~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~----~eal~dAD 174 (337)
|.|+|| |.||+.++..|+...-+. .+.+ .+++.++++..+.++.. .....+.+...+ .+.++++|
T Consensus 1 IlvlG~-G~vG~~~~~~L~~~~~~~---~v~v----a~r~~~~~~~~~~~~~~---~~~~~~~~d~~~~~~l~~~~~~~d 69 (386)
T PF03435_consen 1 ILVLGA-GRVGSAIARLLARRGPFE---EVTV----ADRNPEKAERLAEKLLG---DRVEAVQVDVNDPESLAELLRGCD 69 (386)
T ss_dssp EEEE---SHHHHHHHHHHHCTTCE----EEEE----EESSHHHHHHHHT--TT---TTEEEEE--TTTHHHHHHHHTTSS
T ss_pred CEEEcC-cHHHHHHHHHHhcCCCCC---cEEE----EECCHHHHHHHHhhccc---cceeEEEEecCCHHHHHHHHhcCC
Confidence 789997 999999999998876532 2444 36677777765443311 111112222222 35689999
Q ss_pred EEEEeccc
Q 019713 175 WALLIGAK 182 (337)
Q Consensus 175 vVIitag~ 182 (337)
+||.++|.
T Consensus 70 vVin~~gp 77 (386)
T PF03435_consen 70 VVINCAGP 77 (386)
T ss_dssp EEEE-SSG
T ss_pred EEEECCcc
Confidence 99998754
No 368
>PLN02858 fructose-bisphosphate aldolase
Probab=93.30 E-value=0.37 Score=55.72 Aligned_cols=69 Identities=17% Similarity=0.164 Sum_probs=45.6
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCC
Q 019713 93 WKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFED 172 (337)
Q Consensus 93 ~~~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~d 172 (337)
.+.++||++|| .|.||..++..|+..+. .+.. + |++.++++.. .+.. .....+..+.+++
T Consensus 321 ~~~~~~IGfIG-lG~MG~~mA~~L~~~G~-----~V~v--~--dr~~~~~~~l----~~~G------a~~~~s~~e~~~~ 380 (1378)
T PLN02858 321 AKPVKRIGFIG-LGAMGFGMASHLLKSNF-----SVCG--Y--DVYKPTLVRF----ENAG------GLAGNSPAEVAKD 380 (1378)
T ss_pred ccCCCeEEEEC-chHHHHHHHHHHHHCCC-----EEEE--E--eCCHHHHHHH----HHcC------CeecCCHHHHHhc
Confidence 44468999999 69999999999998775 2433 3 4455554432 2211 1122345678899
Q ss_pred CcEEEEecc
Q 019713 173 AEWALLIGA 181 (337)
Q Consensus 173 ADvVIitag 181 (337)
||+||++..
T Consensus 381 aDvVi~~V~ 389 (1378)
T PLN02858 381 VDVLVIMVA 389 (1378)
T ss_pred CCEEEEecC
Confidence 999998753
No 369
>PRK07576 short chain dehydrogenase; Provisional
Probab=93.30 E-value=1 Score=41.72 Aligned_cols=26 Identities=19% Similarity=0.134 Sum_probs=23.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.++|.|+||+|.||.+++..|+..|.
T Consensus 9 ~k~ilItGasggIG~~la~~l~~~G~ 34 (264)
T PRK07576 9 GKNVVVVGGTSGINLGIAQAFARAGA 34 (264)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC
Confidence 46899999999999999999998764
No 370
>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=93.29 E-value=0.52 Score=42.76 Aligned_cols=26 Identities=12% Similarity=0.130 Sum_probs=23.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.++|.|+||+|.+|.+++..|+..|.
T Consensus 5 ~k~ilItGas~gIG~~la~~l~~~G~ 30 (253)
T PRK08642 5 EQTVLVTGGSRGLGAAIARAFAREGA 30 (253)
T ss_pred CCEEEEeCCCCcHHHHHHHHHHHCCC
Confidence 35899999999999999999988774
No 371
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=93.29 E-value=0.43 Score=45.84 Aligned_cols=67 Identities=16% Similarity=0.056 Sum_probs=40.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcE
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADv 175 (337)
..||+|+|+ |.+|..++..|...+. .|.+ .+++.+++... .++ . . ..+. ..+..+.++++|+
T Consensus 151 gk~v~IiG~-G~iG~avA~~L~~~G~-----~V~v----~~R~~~~~~~~-~~~---g--~-~~~~-~~~l~~~l~~aDi 212 (287)
T TIGR02853 151 GSNVMVLGF-GRTGMTIARTFSALGA-----RVFV----GARSSADLARI-TEM---G--L-IPFP-LNKLEEKVAEIDI 212 (287)
T ss_pred CCEEEEEcC-hHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHH-HHC---C--C-eeec-HHHHHHHhccCCE
Confidence 369999995 9999999999987664 2443 24444443211 111 1 0 0111 1223567889999
Q ss_pred EEEec
Q 019713 176 ALLIG 180 (337)
Q Consensus 176 VIita 180 (337)
||.+.
T Consensus 213 Vint~ 217 (287)
T TIGR02853 213 VINTI 217 (287)
T ss_pred EEECC
Confidence 99975
No 372
>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=93.27 E-value=0.86 Score=41.27 Aligned_cols=26 Identities=19% Similarity=0.216 Sum_probs=23.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
..+|.|+||+|.||++++..|+..+.
T Consensus 6 ~~~vlitGasg~iG~~l~~~l~~~g~ 31 (252)
T PRK06077 6 DKVVVVTGSGRGIGRAIAVRLAKEGS 31 (252)
T ss_pred CcEEEEeCCCChHHHHHHHHHHHCCC
Confidence 46899999999999999999998775
No 373
>KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=93.24 E-value=0.1 Score=48.84 Aligned_cols=108 Identities=18% Similarity=0.144 Sum_probs=63.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccch--hhHHHh---HHHhHhhhccCCc---------ccEE
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERS--LQALEG---VAMELEDSLFPLL---------REVK 161 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~--~~~l~g---~a~DL~d~~~~~~---------~~v~ 161 (337)
.-||+|+| +|-+|++.|..+++.|+ .|. |+||... ...++. ...+|++.. .+. ..+.
T Consensus 3 ~~ki~ivg-Sgl~g~~WAmlFAs~Gy-----qVq--lYDI~e~Ql~~ALen~~Kel~~Lee~g-~lrGnlsa~eqla~is 73 (313)
T KOG2305|consen 3 FGKIAIVG-SGLVGSSWAMLFASSGY-----QVQ--LYDILEKQLQTALENVEKELRKLEEHG-LLRGNLSADEQLALIS 73 (313)
T ss_pred ccceeEee-cccccchHHHHHhccCc-----eEE--EeeccHHHHHHHHHHHHHHHHHHHHhh-hhccCccHHHHHHHHh
Confidence 35999999 79999999999999997 255 4555432 112222 223333322 111 1233
Q ss_pred EecCcccccCCCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhH
Q 019713 162 IGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTN 228 (337)
Q Consensus 162 i~t~~~eal~dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~ 228 (337)
.+++..|..++|=.|=. .+.+.+...+.+.+.|++.+.|.. |+.+.....|
T Consensus 74 ~t~~l~E~vk~Ai~iQE--------------cvpE~L~lkk~ly~qlD~i~d~~t--IlaSSTSt~m 124 (313)
T KOG2305|consen 74 GTTSLNELVKGAIHIQE--------------CVPEDLNLKKQLYKQLDEIADPTT--ILASSTSTFM 124 (313)
T ss_pred CCccHHHHHhhhhhHHh--------------hchHhhHHHHHHHHHHHHhcCCce--EEeccccccC
Confidence 34445566666533222 234456777888899999877764 4566554444
No 374
>PRK06057 short chain dehydrogenase; Provisional
Probab=93.24 E-value=1.4 Score=40.29 Aligned_cols=26 Identities=19% Similarity=0.075 Sum_probs=23.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
..+|.|+||+|.+|.+++..|+..+.
T Consensus 7 ~~~vlItGasggIG~~~a~~l~~~G~ 32 (255)
T PRK06057 7 GRVAVITGGGSGIGLATARRLAAEGA 32 (255)
T ss_pred CCEEEEECCCchHHHHHHHHHHHcCC
Confidence 36899999999999999999998774
No 375
>PRK06199 ornithine cyclodeaminase; Validated
Probab=93.23 E-value=0.36 Score=48.27 Aligned_cols=76 Identities=14% Similarity=0.247 Sum_probs=51.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHH-cCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCC
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAA-GEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~-~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dA 173 (337)
...+++||| +|..+..-+..++. ..-+. .|.+ .+++.++++..+.++.+.. +-..++.+..+..+++++|
T Consensus 154 da~~l~iiG-~G~QA~~~l~a~~~v~~~i~---~V~v----~~r~~~~a~~f~~~~~~~~-~~~~~v~~~~s~~eav~~A 224 (379)
T PRK06199 154 DSKVVGLLG-PGVMGKTILAAFMAVCPGID---TIKI----KGRGQKSLDSFATWVAETY-PQITNVEVVDSIEEVVRGS 224 (379)
T ss_pred CCCEEEEEC-CcHHHHHHHHHHHHhcCCcc---EEEE----ECCCHHHHHHHHHHHHHhc-CCCceEEEeCCHHHHHcCC
Confidence 357999999 59999887777665 22122 2544 3567778887777776432 1112466666778999999
Q ss_pred cEEEEe
Q 019713 174 EWALLI 179 (337)
Q Consensus 174 DvVIit 179 (337)
|+|+.+
T Consensus 225 DIVvta 230 (379)
T PRK06199 225 DIVTYC 230 (379)
T ss_pred CEEEEc
Confidence 999864
No 376
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=93.21 E-value=0.19 Score=49.42 Aligned_cols=27 Identities=30% Similarity=0.385 Sum_probs=24.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
+|+||+|+||+|..|..+...|....-
T Consensus 1 ~~~kV~IvGasGYtG~EL~rlL~~Hp~ 27 (349)
T COG0002 1 MMIKVGIVGASGYTGLELLRLLAGHPD 27 (349)
T ss_pred CCceEEEEcCCCCcHHHHHHHHhcCCC
Confidence 368999999999999999999988765
No 377
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=93.21 E-value=0.37 Score=46.84 Aligned_cols=91 Identities=12% Similarity=0.174 Sum_probs=53.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcEE
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADvV 176 (337)
++|+||| .|.||..+|..|..-|. .|. .+| +..+...+ .. ......+..+.+++||+|
T Consensus 137 ~tvgIvG-~G~IG~~vA~~l~afG~-----~V~--~~~--~~~~~~~~----~~--------~~~~~~~l~e~l~~aDvv 194 (312)
T PRK15469 137 FTIGILG-AGVLGSKVAQSLQTWGF-----PLR--CWS--RSRKSWPG----VQ--------SFAGREELSAFLSQTRVL 194 (312)
T ss_pred CEEEEEC-CCHHHHHHHHHHHHCCC-----EEE--EEe--CCCCCCCC----ce--------eecccccHHHHHhcCCEE
Confidence 6999999 69999999999876554 132 233 22211111 00 000012356889999999
Q ss_pred EEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 177 Iitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
+++.... ..+..++. .+.+++. +|++++|+++-
T Consensus 195 v~~lPlt-----------~~T~~li~--~~~l~~m-k~ga~lIN~aR 227 (312)
T PRK15469 195 INLLPNT-----------PETVGIIN--QQLLEQL-PDGAYLLNLAR 227 (312)
T ss_pred EECCCCC-----------HHHHHHhH--HHHHhcC-CCCcEEEECCC
Confidence 9875211 12223332 2345554 78999999984
No 378
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=93.21 E-value=1.2 Score=40.28 Aligned_cols=26 Identities=19% Similarity=0.069 Sum_probs=23.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
+++|.|+||+|.+|+.++..|+..+.
T Consensus 2 ~k~ilItGas~giG~~la~~l~~~g~ 27 (248)
T PRK06947 2 RKVVLITGASRGIGRATAVLAAARGW 27 (248)
T ss_pred CcEEEEeCCCCcHHHHHHHHHHHCCC
Confidence 35899999999999999999998774
No 379
>PRK08263 short chain dehydrogenase; Provisional
Probab=93.21 E-value=0.34 Score=45.07 Aligned_cols=25 Identities=8% Similarity=-0.133 Sum_probs=22.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
++|.|+||+|.+|.+++..|+..+.
T Consensus 4 k~vlItGasg~iG~~~a~~l~~~g~ 28 (275)
T PRK08263 4 KVWFITGASRGFGRAWTEAALERGD 28 (275)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCC
Confidence 4799999999999999999988774
No 380
>PRK06153 hypothetical protein; Provisional
Probab=93.20 E-value=0.18 Score=50.45 Aligned_cols=35 Identities=23% Similarity=0.275 Sum_probs=27.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEecccc
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSE 136 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d 136 (337)
+..||+|||+ |-+|+.++..|+..|+ + .|+|+|-|
T Consensus 175 ~~~~VaIVG~-GG~GS~Va~~LAR~GV-g-----eI~LVD~D 209 (393)
T PRK06153 175 EGQRIAIIGL-GGTGSYILDLVAKTPV-R-----EIHLFDGD 209 (393)
T ss_pred hhCcEEEEcC-CccHHHHHHHHHHcCC-C-----EEEEECCC
Confidence 3469999995 9999999999999997 3 34455555
No 381
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=93.18 E-value=0.16 Score=48.03 Aligned_cols=136 Identities=10% Similarity=0.044 Sum_probs=78.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC----CCCCCceEEEeccccc--hhhH--HHhHHHhHhhhccCCcccEEEecCccc
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEV----LGPDQPIALKLLGSER--SLQA--LEGVAMELEDSLFPLLREVKIGINPYE 168 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l----~~e~~~v~L~L~d~d~--~~~~--l~g~a~DL~d~~~~~~~~v~i~t~~~e 168 (337)
.||.|.|| |..|-.++..|...+. -.++-.-.++++|..- ..++ +......+.+.. .+-....+..+
T Consensus 26 ~riv~~GA-GsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~Gll~~~r~~l~~~~~~~~~~~----~~~~~~~~L~e 100 (254)
T cd00762 26 HKVLFNGA-GAAALGIANLIVXLXVKEGISKEEACKRIWXVDRKGLLVKNRKETCPNEYHLARFA----NPERESGDLED 100 (254)
T ss_pred cEEEEECc-CHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECCCCeEeCCCCccCHHHHHHHHHc----CcccccCCHHH
Confidence 59999995 9999999988876443 1111111344555431 0101 111111111111 11111245778
Q ss_pred ccC--CCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCch---hHHHHHHHHCCCCCCCe
Q 019713 169 LFE--DAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN---TNALICLKNAPSIPAKN 243 (337)
Q Consensus 169 al~--dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd---~~t~i~~k~s~~~p~kv 243 (337)
+++ ++|+.|=+.+.| | -+-+++.+.|.++ +++.+|.-.+||.. ....-+++++. .+.+
T Consensus 101 av~~~kptvlIG~S~~~---g-----------~ft~evv~~Ma~~-~~~PIIFaLSNPt~~aE~tpe~a~~~t~--G~ai 163 (254)
T cd00762 101 AVEAAKPDFLIGVSRVG---G-----------AFTPEVIRAXAEI-NERPVIFALSNPTSKAECTAEEAYTATE--GRAI 163 (254)
T ss_pred HHHhhCCCEEEEeCCCC---C-----------CCCHHHHHHHhhc-CCCCEEEECCCcCCccccCHHHHHhhcC--CCEE
Confidence 999 999988665433 2 1225677777777 68889999999974 55666677652 2357
Q ss_pred EEecCchhHHH
Q 019713 244 FHALTRLDENR 254 (337)
Q Consensus 244 IG~gT~LDs~R 254 (337)
|++|.....+.
T Consensus 164 ~AtGspf~pv~ 174 (254)
T cd00762 164 FASGSPFHPVE 174 (254)
T ss_pred EEECCCCCCcc
Confidence 88888765543
No 382
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=93.16 E-value=0.9 Score=42.99 Aligned_cols=24 Identities=29% Similarity=0.393 Sum_probs=20.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGE 120 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~ 120 (337)
|+||+|||+ |.||..++..|...+
T Consensus 1 m~rVgIiG~-G~iG~~~~~~l~~~~ 24 (265)
T PRK13303 1 MMKVAMIGF-GAIGAAVLELLEHDP 24 (265)
T ss_pred CcEEEEECC-CHHHHHHHHHHhhCC
Confidence 579999996 999999998887654
No 383
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=93.16 E-value=1.4 Score=39.80 Aligned_cols=25 Identities=32% Similarity=0.302 Sum_probs=22.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
++|.|+||+|.+|.+++..|+..+.
T Consensus 2 ~~vlItGa~g~lG~~l~~~l~~~g~ 26 (255)
T TIGR01963 2 KTALVTGAASGIGLAIALALAAAGA 26 (255)
T ss_pred CEEEEcCCcchHHHHHHHHHHHCCC
Confidence 4799999999999999999988765
No 384
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=93.14 E-value=0.52 Score=42.70 Aligned_cols=25 Identities=12% Similarity=0.145 Sum_probs=22.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
..||.|+|+ |.+|+.++..|+..|+
T Consensus 21 ~s~VlIiG~-gglG~evak~La~~GV 45 (197)
T cd01492 21 SARILLIGL-KGLGAEIAKNLVLSGI 45 (197)
T ss_pred hCcEEEEcC-CHHHHHHHHHHHHcCC
Confidence 369999995 9999999999999997
No 385
>PRK06914 short chain dehydrogenase; Provisional
Probab=93.10 E-value=1.1 Score=41.65 Aligned_cols=25 Identities=20% Similarity=0.082 Sum_probs=22.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
++|.|+||+|.+|.+++..|+..|.
T Consensus 4 k~~lItGasg~iG~~la~~l~~~G~ 28 (280)
T PRK06914 4 KIAIVTGASSGFGLLTTLELAKKGY 28 (280)
T ss_pred CEEEEECCCchHHHHHHHHHHhCCC
Confidence 4689999999999999999998774
No 386
>PRK07877 hypothetical protein; Provisional
Probab=93.07 E-value=0.25 Score=53.29 Aligned_cols=27 Identities=26% Similarity=0.400 Sum_probs=24.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGP 124 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e 124 (337)
..||+|+|+ | +|++++..|+..|++|+
T Consensus 107 ~~~V~IvG~-G-lGs~~a~~LaraGvvG~ 133 (722)
T PRK07877 107 RLRIGVVGL-S-VGHAIAHTLAAEGLCGE 133 (722)
T ss_pred cCCEEEEEe-c-HHHHHHHHHHHccCCCe
Confidence 469999996 9 99999999999998775
No 387
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=93.05 E-value=0.19 Score=45.61 Aligned_cols=25 Identities=24% Similarity=0.250 Sum_probs=22.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.++|+|+| .|.||+.++..|...|.
T Consensus 28 gk~v~I~G-~G~vG~~~A~~L~~~G~ 52 (200)
T cd01075 28 GKTVAVQG-LGKVGYKLAEHLLEEGA 52 (200)
T ss_pred CCEEEEEC-CCHHHHHHHHHHHHCCC
Confidence 46899999 59999999999988775
No 388
>KOG1683 consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=93.01 E-value=0.31 Score=48.31 Aligned_cols=48 Identities=17% Similarity=0.057 Sum_probs=39.0
Q ss_pred EecCcccccCCCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCc
Q 019713 162 IGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC 225 (337)
Q Consensus 162 i~t~~~eal~dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPv 225 (337)
..+.||..++++|.|+.+. -+|+++..++.+.|+++++|+++ ..+|..
T Consensus 59 ~~~~Dy~~~~~~dmvieav--------------~edl~Lk~~l~~~le~v~~~~~i--~gsntS 106 (380)
T KOG1683|consen 59 VETLDYTGFANADMVIEAV--------------FEDLELKHELFKSLEKVEPPKCI--RGSNTS 106 (380)
T ss_pred ccccccccccccceeccch--------------hhhHHHHHHHHHHHHhhcCCcce--eeeccc
Confidence 3467899999999996653 57899999999999999888885 566653
No 389
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=92.98 E-value=0.56 Score=42.97 Aligned_cols=26 Identities=27% Similarity=0.238 Sum_probs=23.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.+++.|+||+|.+|.+++..|+..|.
T Consensus 8 ~k~vlVtGas~gIG~~la~~l~~~G~ 33 (260)
T PRK12823 8 GKVVVVTGAAQGIGRGVALRAAAEGA 33 (260)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC
Confidence 35899999999999999999998775
No 390
>PF11975 Glyco_hydro_4C: Family 4 glycosyl hydrolase C-terminal domain; InterPro: IPR022616 This domain is found primarily in bacterial family 4 glycosyl hydrolases. It is found in the C terminus. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1UP4_A 1UP6_C 1UP7_E 1VJT_A 1U8X_X 1S6Y_A 3FEF_D 1OBB_A.
Probab=92.98 E-value=0.073 Score=49.25 Aligned_cols=59 Identities=15% Similarity=0.246 Sum_probs=39.9
Q ss_pred cccceEEEe-ccCCCcccccccceEcCeehhhhhhhc------ccch-------HHH-HHHHHhcc------Ccccceeh
Q 019713 269 KVSNMTIWG-NHSTTQVPDFLNARINGLPVKEIIKDH------KWLE-------EGF-TETIQKVR------LVDNFTLI 327 (337)
Q Consensus 269 ~V~~v~V~G-nHG~t~vp~~S~a~V~G~pl~e~i~~~------~~~~-------~e~-~~~v~~~g------~~~~~~l~ 327 (337)
+|+ .-+.| || +.|+..++++|+++.+.+.+. .+.. ..+ .+.++..+ +.|++|++
T Consensus 2 ~l~-~~~~GlNH----~~W~~~~~~~G~D~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~g~~~p~~y~~ 76 (232)
T PF11975_consen 2 DLD-YDYAGLNH----FTWFTKVRYKGKDLYPELREWIEEYGEEFYEEEPEDQDSPWSPDLYRAEGLKPFGYYLPNSYLH 76 (232)
T ss_dssp GEE-EEEEEETT----EEEEEEEEETTEEHHHHHHHHHHHHGGG-GTSSTT-TTSHHHHHHHHHHSCHCEGGSCCHGGGH
T ss_pred ceE-EEEEEEcC----cEeEEEEEECCcccHHHHHHHHHhccccccccccccccchhhHHHHHHhcccccCcccCCcchh
Confidence 455 35689 99 999999999999977644321 1111 012 24455566 88999999
Q ss_pred eeeee
Q 019713 328 LFVMN 332 (337)
Q Consensus 328 ~~~~~ 332 (337)
||||.
T Consensus 77 yy~~~ 81 (232)
T PF11975_consen 77 YYYYP 81 (232)
T ss_dssp HHCCH
T ss_pred HHhcC
Confidence 99984
No 391
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=92.98 E-value=1.8 Score=39.79 Aligned_cols=26 Identities=19% Similarity=0.377 Sum_probs=23.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.++|.|+||+|.||.+++..|+..|.
T Consensus 8 ~k~vlItGas~gIG~~ia~~l~~~G~ 33 (260)
T PRK08416 8 GKTLVISGGTRGIGKAIVYEFAQSGV 33 (260)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC
Confidence 35899999999999999999998775
No 392
>KOG4777 consensus Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=92.96 E-value=0.078 Score=50.24 Aligned_cols=78 Identities=21% Similarity=0.202 Sum_probs=43.2
Q ss_pred CEEE-EEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccc-cchhhHHHhHHHhH--hhhccCCcccEEEecCcccccCC
Q 019713 97 VNIA-VSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGS-ERSLQALEGVAMEL--EDSLFPLLREVKIGINPYELFED 172 (337)
Q Consensus 97 ~KI~-IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~-d~~~~~l~g~a~DL--~d~~~~~~~~v~i~t~~~eal~d 172 (337)
.|++ |+||+|.||+-+...|.....|+ |..++. .++-.+.-+.+..- .|....-....++...+.+.|.+
T Consensus 4 kk~a~vlGaTGaVGQrFi~lLsdhP~f~------ikvLgAS~RSAGK~ya~a~~wkqt~~lp~~~~e~~V~ec~~~~F~e 77 (361)
T KOG4777|consen 4 KKSAPVLGATGAVGQRFISLLSDHPYFS------IKVLGASKRSAGKRYAFAGNWKQTDLLPESAHEYTVEECTADSFNE 77 (361)
T ss_pred ccccceeeccchhHHHHHHHhccCCcce------eeeecccccccCCceEecccchhcccccchhhhhhHhhcChhhccc
Confidence 3667 99999999999999998887763 222322 22211111111100 11110011234444456788999
Q ss_pred CcEEEEec
Q 019713 173 AEWALLIG 180 (337)
Q Consensus 173 ADvVIita 180 (337)
+|+|+...
T Consensus 78 cDIvfsgl 85 (361)
T KOG4777|consen 78 CDIVFSGL 85 (361)
T ss_pred ccEEEecC
Confidence 99998854
No 393
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=92.96 E-value=0.31 Score=44.78 Aligned_cols=26 Identities=15% Similarity=0.066 Sum_probs=23.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.++|.|+||+|.+|..++..|+..|.
T Consensus 15 ~k~vlItGas~gIG~~ia~~l~~~G~ 40 (258)
T PRK06935 15 GKVAIVTGGNTGLGQGYAVALAKAGA 40 (258)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC
Confidence 46899999999999999999998775
No 394
>PRK12742 oxidoreductase; Provisional
Probab=92.94 E-value=0.82 Score=41.09 Aligned_cols=26 Identities=12% Similarity=0.157 Sum_probs=23.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.++|.|+||+|.||..++..|+..+.
T Consensus 6 ~k~vlItGasggIG~~~a~~l~~~G~ 31 (237)
T PRK12742 6 GKKVLVLGGSRGIGAAIVRRFVTDGA 31 (237)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC
Confidence 35899999999999999999998775
No 395
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=92.92 E-value=1.6 Score=40.22 Aligned_cols=25 Identities=16% Similarity=0.016 Sum_probs=22.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
+++.|+||+|.+|.+++..|+..+.
T Consensus 11 k~~lItGa~~~iG~~ia~~l~~~G~ 35 (265)
T PRK07097 11 KIALITGASYGIGFAIAKAYAKAGA 35 (265)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCC
Confidence 5799999999999999999998775
No 396
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=92.91 E-value=0.55 Score=45.24 Aligned_cols=75 Identities=16% Similarity=0.195 Sum_probs=46.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccc-----------------hhhHHHhHHHhHhhhccCCccc
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSER-----------------SLQALEGVAMELEDSLFPLLRE 159 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~-----------------~~~~l~g~a~DL~d~~~~~~~~ 159 (337)
.||.|+|+ |.+|..+|..|+..|+- .+.| +|.|. ...+++..+..|.+.. |. .+
T Consensus 20 s~VLIvG~-gGLG~EiaKnLalaGVg----~itI--~D~d~ve~snL~rqf~~~~~dIGk~Kaea~~~~L~eLN-p~-V~ 90 (286)
T cd01491 20 SNVLISGL-GGLGVEIAKNLILAGVK----SVTL--HDTKPCSWSDLSSQFYLREEDIGKNRAEASQARLAELN-PY-VP 90 (286)
T ss_pred CcEEEEcC-CHHHHHHHHHHHHcCCC----eEEE--EcCCccchhhcccCccCChHHhCHHHHHHHHHHHHHHC-CC-CE
Confidence 58999995 99999999999999983 1444 44432 1223443333344322 21 23
Q ss_pred EEEecC--cccccCCCcEEEEec
Q 019713 160 VKIGIN--PYELFEDAEWALLIG 180 (337)
Q Consensus 160 v~i~t~--~~eal~dADvVIita 180 (337)
++..++ +.+.+.+.|+||.+.
T Consensus 91 V~~~~~~~~~~~l~~fdvVV~~~ 113 (286)
T cd01491 91 VTVSTGPLTTDELLKFQVVVLTD 113 (286)
T ss_pred EEEEeccCCHHHHhcCCEEEEec
Confidence 443332 457789999998875
No 397
>PRK08264 short chain dehydrogenase; Validated
Probab=92.89 E-value=1.1 Score=40.44 Aligned_cols=26 Identities=23% Similarity=0.162 Sum_probs=23.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
..+|.|+||+|.+|.+++..|+..+.
T Consensus 6 ~~~vlItGgsg~iG~~la~~l~~~G~ 31 (238)
T PRK08264 6 GKVVLVTGANRGIGRAFVEQLLARGA 31 (238)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCc
Confidence 45899999999999999999998774
No 398
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=92.85 E-value=1.5 Score=40.03 Aligned_cols=26 Identities=15% Similarity=0.203 Sum_probs=23.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.++|.|+||+|.+|.+++..|+..|.
T Consensus 11 ~k~vlVtG~s~gIG~~la~~l~~~G~ 36 (255)
T PRK06113 11 GKCAIITGAGAGIGKEIAITFATAGA 36 (255)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC
Confidence 46899999999999999999998775
No 399
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=92.84 E-value=0.67 Score=45.49 Aligned_cols=84 Identities=14% Similarity=0.127 Sum_probs=46.6
Q ss_pred HHHHHHHHHHcCCCCCCCceEEEeccccchhhHHH-hHHHhHhhhccCCcccEEEecCcccccCCCcEEEEecccCCCCC
Q 019713 109 ANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALE-GVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPG 187 (337)
Q Consensus 109 G~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~-g~a~DL~d~~~~~~~~v~i~t~~~eal~dADvVIitag~prk~g 187 (337)
|+.+|..|+..|. ++.+ + |++.++++ ..+..+.+.. ....++..++.+++|+||++-.
T Consensus 32 GspMArnLlkAGh-----eV~V--~--Drnrsa~e~e~~e~LaeaG------A~~AaS~aEAAa~ADVVIL~LP------ 90 (341)
T TIGR01724 32 GSRMAIEFAMAGH-----DVVL--A--EPNREFMSDDLWKKVEDAG------VKVVSDDKEAAKHGEIHVLFTP------ 90 (341)
T ss_pred HHHHHHHHHHCCC-----EEEE--E--eCChhhhhhhhhHHHHHCC------CeecCCHHHHHhCCCEEEEecC------
Confidence 7889999988775 2443 3 34444332 2222233321 2344556799999999998742
Q ss_pred CchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 019713 188 MERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (337)
Q Consensus 188 ~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvt 222 (337)
|.+..+++.+.+.....++.+||..|
T Consensus 91 ---------d~aaV~eVl~GLaa~L~~GaIVID~S 116 (341)
T TIGR01724 91 ---------FGKGTFSIARTIIEHVPENAVICNTC 116 (341)
T ss_pred ---------CHHHHHHHHHHHHhcCCCCCEEEECC
Confidence 22333444444544445666555444
No 400
>TIGR01179 galE UDP-glucose-4-epimerase. This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately.
Probab=92.78 E-value=0.99 Score=42.28 Aligned_cols=109 Identities=17% Similarity=0.103 Sum_probs=57.7
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEE-ecC--cc----ccc
Q 019713 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI-GIN--PY----ELF 170 (337)
Q Consensus 98 KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i-~t~--~~----eal 170 (337)
||.|+||+|.+|..++..|...+. .|.+ ++.. .....+ ...++.+. . ++.. ..| +. +.+
T Consensus 1 kvlV~GatG~iG~~l~~~l~~~g~-----~V~~--~~~~-~~~~~~-~~~~~~~~--~---~~~~~~~D~~~~~~~~~~~ 66 (328)
T TIGR01179 1 KILVTGGAGYIGSHTVRQLLESGH-----EVVV--LDNL-SNGSPE-ALKRGERI--T---RVTFVEGDLRDRELLDRLF 66 (328)
T ss_pred CEEEeCCCCHHHHHHHHHHHhCCC-----eEEE--EeCC-Cccchh-hhhhhccc--c---ceEEEECCCCCHHHHHHHH
Confidence 689999999999999999988764 2433 2211 111111 00111110 0 1111 111 11 223
Q ss_pred --CCCcEEEEecccCCCC--CCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 019713 171 --EDAEWALLIGAKPRGP--GMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (337)
Q Consensus 171 --~dADvVIitag~prk~--g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvt 222 (337)
.+.|+||.++|....+ .....+....|+.....+.+.+.+. +.. .+++++
T Consensus 67 ~~~~~d~vv~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~-~~v~~s 120 (328)
T TIGR01179 67 EEHKIDAVIHFAGLIAVGESVQDPLKYYRNNVVNTLNLLEAMQQT-GVK-KFIFSS 120 (328)
T ss_pred HhCCCcEEEECccccCcchhhcCchhhhhhhHHHHHHHHHHHHhc-CCC-EEEEec
Confidence 2689999988754321 1223345667887777788877765 333 444444
No 401
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=92.77 E-value=0.7 Score=42.18 Aligned_cols=67 Identities=15% Similarity=0.109 Sum_probs=40.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEE--ecCcccccCCCc
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKI--GINPYELFEDAE 174 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i--~t~~~eal~dAD 174 (337)
.||.|||+ |.+|..-+..|...|- .|.+ ++.+.. +.++. +.+.. ++.. ..-..+++.++|
T Consensus 10 k~vlVvGg-G~va~rk~~~Ll~~ga-----~VtV--vsp~~~-~~l~~----l~~~~-----~i~~~~~~~~~~dl~~~~ 71 (205)
T TIGR01470 10 RAVLVVGG-GDVALRKARLLLKAGA-----QLRV--IAEELE-SELTL----LAEQG-----GITWLARCFDADILEGAF 71 (205)
T ss_pred CeEEEECc-CHHHHHHHHHHHHCCC-----EEEE--EcCCCC-HHHHH----HHHcC-----CEEEEeCCCCHHHhCCcE
Confidence 59999996 9999999999988774 2443 333322 12222 22111 2333 222346789999
Q ss_pred EEEEecc
Q 019713 175 WALLIGA 181 (337)
Q Consensus 175 vVIitag 181 (337)
+||.+-+
T Consensus 72 lVi~at~ 78 (205)
T TIGR01470 72 LVIAATD 78 (205)
T ss_pred EEEECCC
Confidence 9888643
No 402
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=92.77 E-value=1.6 Score=41.20 Aligned_cols=27 Identities=22% Similarity=0.295 Sum_probs=23.6
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 94 KKMVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 94 ~~~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.+..||.|||| |.+|+.++..|+..|+
T Consensus 9 ~~~~~V~vvG~-GGlGs~v~~~Lar~G~ 35 (244)
T TIGR03736 9 SRPVSVVLVGA-GGTGSQVIAGLARLHH 35 (244)
T ss_pred hCCCeEEEEcC-ChHHHHHHHHHHHccc
Confidence 46689999995 9999999999998764
No 403
>PRK08324 short chain dehydrogenase; Validated
Probab=92.75 E-value=0.5 Score=50.56 Aligned_cols=25 Identities=36% Similarity=0.298 Sum_probs=22.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
++|.|+||+|.||..++..|+..|.
T Consensus 423 k~vLVTGasggIG~~la~~L~~~Ga 447 (681)
T PRK08324 423 KVALVTGAAGGIGKATAKRLAAEGA 447 (681)
T ss_pred CEEEEecCCCHHHHHHHHHHHHCcC
Confidence 6899999999999999999998774
No 404
>PRK09134 short chain dehydrogenase; Provisional
Probab=92.72 E-value=1.8 Score=39.68 Aligned_cols=27 Identities=30% Similarity=0.265 Sum_probs=23.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
..++|.|+||+|.||.+++..|+..+.
T Consensus 8 ~~k~vlItGas~giG~~la~~l~~~g~ 34 (258)
T PRK09134 8 APRAALVTGAARRIGRAIALDLAAHGF 34 (258)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC
Confidence 346899999999999999999988774
No 405
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=92.71 E-value=0.36 Score=45.90 Aligned_cols=98 Identities=17% Similarity=0.222 Sum_probs=51.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcEE
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADvV 176 (337)
|||.|+||+|.+|+++...|...+. .+. .. .+. -.|+.|.. .+ ....++. +-|+|
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~~~-----~v~--~~--~r~-------~~dl~d~~-~~-------~~~~~~~-~pd~V 55 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKERGY-----EVI--AT--SRS-------DLDLTDPE-AV-------AKLLEAF-KPDVV 55 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTTSE-----EEE--EE--STT-------CS-TTSHH-HH-------HHHHHHH---SEE
T ss_pred CEEEEECCCCHHHHHHHHHHhhCCC-----EEE--Ee--Cch-------hcCCCCHH-HH-------HHHHHHh-CCCeE
Confidence 7999999999999999999876553 122 11 111 12222211 00 0011222 37899
Q ss_pred EEecccCCCCC--CchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 019713 177 LLIGAKPRGPG--MERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (337)
Q Consensus 177 Iitag~prk~g--~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvt 222 (337)
|.+++...... .........|......+++...+. ++++|.+|
T Consensus 56 in~aa~~~~~~ce~~p~~a~~iN~~~~~~la~~~~~~---~~~li~~S 100 (286)
T PF04321_consen 56 INCAAYTNVDACEKNPEEAYAINVDATKNLAEACKER---GARLIHIS 100 (286)
T ss_dssp EE------HHHHHHSHHHHHHHHTHHHHHHHHHHHHC---T-EEEEEE
T ss_pred eccceeecHHhhhhChhhhHHHhhHHHHHHHHHHHHc---CCcEEEee
Confidence 99886532111 123344667777788888877764 56777776
No 406
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=92.69 E-value=2.2 Score=38.66 Aligned_cols=26 Identities=19% Similarity=0.118 Sum_probs=23.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.++|.|+||+|.||.+++..|+..|.
T Consensus 5 ~k~vlItGas~gIG~~ia~~l~~~G~ 30 (248)
T TIGR01832 5 GKVALVTGANTGLGQGIAVGLAEAGA 30 (248)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC
Confidence 46899999999999999999998775
No 407
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=92.69 E-value=0.67 Score=43.94 Aligned_cols=131 Identities=15% Similarity=0.080 Sum_probs=72.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHHc----CCCCCC--CceEEEeccccc----hhhHHHhHHHhHhhhccCCcccEEEecCc
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAG----EVLGPD--QPIALKLLGSER----SLQALEGVAMELEDSLFPLLREVKIGINP 166 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~----~l~~e~--~~v~L~L~d~d~----~~~~l~g~a~DL~d~~~~~~~~v~i~t~~ 166 (337)
.||.|+|| |..|-.++..|... |+-.++ ..+. ++|..- +.+.+......+.+...+ .....+.
T Consensus 26 ~riv~~GA-GsAg~gia~ll~~~~~~~G~~~~eA~~~i~--lvD~~Gll~~~r~~l~~~~~~~a~~~~~----~~~~~~L 98 (255)
T PF03949_consen 26 QRIVFFGA-GSAGIGIARLLVAAMVREGLSEEEARKRIW--LVDSKGLLTDDREDLNPHKKPFARKTNP----EKDWGSL 98 (255)
T ss_dssp -EEEEEB--SHHHHHHHHHHHHHHHCTTS-HHHHHTTEE--EEETTEEEBTTTSSHSHHHHHHHBSSST----TT--SSH
T ss_pred cEEEEeCC-ChhHHHHHHHHHHHHHHhcCCHHHHhccEE--EEeccceEeccCccCChhhhhhhccCcc----cccccCH
Confidence 59999995 99999999988877 763100 1233 444321 111222222222222211 1111456
Q ss_pred ccccCCC--cEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCch---hHHHHHHHHCCCCCC
Q 019713 167 YELFEDA--EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN---TNALICLKNAPSIPA 241 (337)
Q Consensus 167 ~eal~dA--DvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd---~~t~i~~k~s~~~p~ 241 (337)
.++++++ |++|=+.+.| | .+-+++.+.|.++ +++.+|.=.+||.. ....-+++++.+.
T Consensus 99 ~eav~~~kPtvLIG~S~~~---g-----------~ft~evv~~Ma~~-~erPIIF~LSNPt~~aE~~peda~~~t~g~-- 161 (255)
T PF03949_consen 99 LEAVKGAKPTVLIGLSGQG---G-----------AFTEEVVRAMAKH-NERPIIFPLSNPTPKAECTPEDAYEWTDGR-- 161 (255)
T ss_dssp HHHHHCH--SEEEECSSST---T-----------SS-HHHHHHCHHH-SSSEEEEE-SSSCGGSSS-HHHHHHTTTSE--
T ss_pred HHHHHhcCCCEEEEecCCC---C-----------cCCHHHHHHHhcc-CCCCEEEECCCCCCcccCCHHHHHhhCCce--
Confidence 7999999 9988766543 2 2236677788887 78889999999975 4555566665211
Q ss_pred CeEEecCchh
Q 019713 242 KNFHALTRLD 251 (337)
Q Consensus 242 kvIG~gT~LD 251 (337)
-+|.+|+-.+
T Consensus 162 ai~AtGSpf~ 171 (255)
T PF03949_consen 162 AIFATGSPFP 171 (255)
T ss_dssp EEEEESS---
T ss_pred EEEecCCccC
Confidence 2467776544
No 408
>PRK08589 short chain dehydrogenase; Validated
Probab=92.63 E-value=2.6 Score=39.18 Aligned_cols=26 Identities=19% Similarity=0.127 Sum_probs=23.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.+++.|+||+|.+|.+++..|+..|.
T Consensus 6 ~k~vlItGas~gIG~aia~~l~~~G~ 31 (272)
T PRK08589 6 NKVAVITGASTGIGQASAIALAQEGA 31 (272)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC
Confidence 35799999999999999999998775
No 409
>PRK12824 acetoacetyl-CoA reductase; Provisional
Probab=92.55 E-value=3.7 Score=36.86 Aligned_cols=25 Identities=20% Similarity=0.101 Sum_probs=22.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.+|.|+||+|.+|.+++..|+..+.
T Consensus 3 k~vlItG~s~~iG~~la~~l~~~g~ 27 (245)
T PRK12824 3 KIALVTGAKRGIGSAIARELLNDGY 27 (245)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCC
Confidence 4789999999999999999998764
No 410
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=92.51 E-value=0.66 Score=46.96 Aligned_cols=91 Identities=13% Similarity=0.062 Sum_probs=54.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCc
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dAD 174 (337)
.-.+|+|+|+ |.||..++..+...|. .|.+ + |.++.+++ .+.++ .. .+. ...++++++|
T Consensus 201 ~GktVvViG~-G~IG~~va~~ak~~Ga-----~ViV--~--d~d~~R~~-~A~~~-----G~--~~~---~~~e~v~~aD 259 (413)
T cd00401 201 AGKVAVVAGY-GDVGKGCAQSLRGQGA-----RVIV--T--EVDPICAL-QAAME-----GY--EVM---TMEEAVKEGD 259 (413)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCC-----EEEE--E--ECChhhHH-HHHhc-----CC--EEc---cHHHHHcCCC
Confidence 3469999995 9999999998877665 1443 2 33444433 22211 11 111 2246788999
Q ss_pred EEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCC
Q 019713 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (337)
Q Consensus 175 vVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNP 224 (337)
+||.+.|.+ .++..- .++.. .+++++++++.+
T Consensus 260 VVI~atG~~---------------~~i~~~--~l~~m-k~GgilvnvG~~ 291 (413)
T cd00401 260 IFVTTTGNK---------------DIITGE--HFEQM-KDGAIVCNIGHF 291 (413)
T ss_pred EEEECCCCH---------------HHHHHH--HHhcC-CCCcEEEEeCCC
Confidence 999875432 222211 13333 688899999975
No 411
>PRK12367 short chain dehydrogenase; Provisional
Probab=92.43 E-value=0.67 Score=43.02 Aligned_cols=26 Identities=23% Similarity=0.316 Sum_probs=23.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.+++.|+||+|.+|.+++..|+..|.
T Consensus 14 ~k~~lITGas~gIG~ala~~l~~~G~ 39 (245)
T PRK12367 14 GKRIGITGASGALGKALTKAFRAKGA 39 (245)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCCC
Confidence 35899999999999999999998775
No 412
>PLN02928 oxidoreductase family protein
Probab=92.43 E-value=0.36 Score=47.63 Aligned_cols=103 Identities=16% Similarity=0.133 Sum_probs=53.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhc-cCCcccEEEecCcccccCCCcE
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSL-FPLLREVKIGINPYELFEDAEW 175 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~-~~~~~~v~i~t~~~eal~dADv 175 (337)
++|+||| .|.||..+|..|..-|. .|.. + ++...........+.... ..+........+..+.++.||+
T Consensus 160 ktvGIiG-~G~IG~~vA~~l~afG~-----~V~~--~--dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ell~~aDi 229 (347)
T PLN02928 160 KTVFILG-YGAIGIELAKRLRPFGV-----KLLA--T--RRSWTSEPEDGLLIPNGDVDDLVDEKGGHEDIYEFAGEADI 229 (347)
T ss_pred CEEEEEC-CCHHHHHHHHHHhhCCC-----EEEE--E--CCCCChhhhhhhccccccccccccccCcccCHHHHHhhCCE
Confidence 6999999 59999999999875553 2432 2 332111110000000000 0000000011345688999999
Q ss_pred EEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 176 VIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
|++... ..+ .+..++. .+.++.. +|++++|+++=
T Consensus 230 Vvl~lP--lt~---------~T~~li~--~~~l~~M-k~ga~lINvaR 263 (347)
T PLN02928 230 VVLCCT--LTK---------ETAGIVN--DEFLSSM-KKGALLVNIAR 263 (347)
T ss_pred EEECCC--CCh---------HhhcccC--HHHHhcC-CCCeEEEECCC
Confidence 998752 111 1112221 2344454 68999999974
No 413
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=92.40 E-value=1.3 Score=43.64 Aligned_cols=84 Identities=19% Similarity=0.193 Sum_probs=45.0
Q ss_pred HHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHh-HhhhccCCcccEEEecCcccccCCCcEEEEecccCCCCC
Q 019713 109 ANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAME-LEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPG 187 (337)
Q Consensus 109 G~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~D-L~d~~~~~~~~v~i~t~~~eal~dADvVIitag~prk~g 187 (337)
|..+|..|+..|. .|.+ + |++.+.++....+ +.+ ..+...+++.+++++||+||++. |-
T Consensus 32 G~~MA~~La~aG~-----~V~v--~--Dr~~~~l~~~~~~~l~~------~Gi~~asd~~eaa~~ADvVIlaV--P~--- 91 (342)
T PRK12557 32 GSRMAIEFAEAGH-----DVVL--A--EPNRSILSEELWKKVED------AGVKVVSDDAEAAKHGEIHILFT--PF--- 91 (342)
T ss_pred HHHHHHHHHhCCC-----eEEE--E--ECCHHHhhHHHHHHHHH------CCCEEeCCHHHHHhCCCEEEEEC--CC---
Confidence 7788888887764 2444 3 3444332211111 111 12455566778889999999874 21
Q ss_pred CchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 019713 188 MERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (337)
Q Consensus 188 ~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvt 222 (337)
...++++.+.|.....++.+|+..+
T Consensus 92 ----------~~~v~~Vl~~L~~~L~~g~IVId~S 116 (342)
T PRK12557 92 ----------GKKTVEIAKNILPHLPENAVICNTC 116 (342)
T ss_pred ----------cHHHHHHHHHHHhhCCCCCEEEEec
Confidence 1123334445555445566666554
No 414
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=92.39 E-value=0.41 Score=46.01 Aligned_cols=95 Identities=19% Similarity=0.269 Sum_probs=59.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccC--CCc
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFE--DAE 174 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~--dAD 174 (337)
|||.|+|+.|++|..|...|. ++. +.+.+ ++.. +|+.|... ..+.++ .=|
T Consensus 1 M~iLi~G~~GqLG~~L~~~l~-~~~----~v~a~-----~~~~-------~Ditd~~~-----------v~~~i~~~~PD 52 (281)
T COG1091 1 MKILITGANGQLGTELRRALP-GEF----EVIAT-----DRAE-------LDITDPDA-----------VLEVIRETRPD 52 (281)
T ss_pred CcEEEEcCCChHHHHHHHHhC-CCc----eEEec-----cCcc-------ccccChHH-----------HHHHHHhhCCC
Confidence 469999999999999998875 221 01221 1111 44444320 122333 358
Q ss_pred EEEEecccCC--CCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC
Q 019713 175 WALLIGAKPR--GPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG 222 (337)
Q Consensus 175 vVIitag~pr--k~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvt 222 (337)
+||.+|+... +...++..-...|..-...+++.-+++ ++++|-+|
T Consensus 53 vVIn~AAyt~vD~aE~~~e~A~~vNa~~~~~lA~aa~~~---ga~lVhiS 99 (281)
T COG1091 53 VVINAAAYTAVDKAESEPELAFAVNATGAENLARAAAEV---GARLVHIS 99 (281)
T ss_pred EEEECccccccccccCCHHHHHHhHHHHHHHHHHHHHHh---CCeEEEee
Confidence 9999887654 233455666778888888888887776 56677666
No 415
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=92.39 E-value=0.34 Score=44.61 Aligned_cols=26 Identities=15% Similarity=0.133 Sum_probs=23.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.++|.|+||+|.||.+++..|+..|.
T Consensus 6 ~k~vlVtGas~gIG~~ia~~l~~~G~ 31 (263)
T PRK06200 6 GQVALITGGGSGIGRALVERFLAEGA 31 (263)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC
Confidence 46899999999999999999998775
No 416
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=92.36 E-value=0.74 Score=43.47 Aligned_cols=72 Identities=13% Similarity=0.130 Sum_probs=44.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcE
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADv 175 (337)
.++|.|+|+ |.+|.+++..|+..+. .+.+ .+++.++++..+.++.... .+...+.+...+.++|+
T Consensus 117 ~k~vliiGa-Gg~g~aia~~L~~~g~-----~v~v----~~R~~~~~~~la~~~~~~~-----~~~~~~~~~~~~~~~Di 181 (270)
T TIGR00507 117 NQRVLIIGA-GGAARAVALPLLKADC-----NVII----ANRTVSKAEELAERFQRYG-----EIQAFSMDELPLHRVDL 181 (270)
T ss_pred CCEEEEEcC-cHHHHHHHHHHHHCCC-----EEEE----EeCCHHHHHHHHHHHhhcC-----ceEEechhhhcccCccE
Confidence 468999995 9999999999987653 2444 2455566665555443211 12222222234568999
Q ss_pred EEEeccc
Q 019713 176 ALLIGAK 182 (337)
Q Consensus 176 VIitag~ 182 (337)
||.+.+.
T Consensus 182 vInatp~ 188 (270)
T TIGR00507 182 IINATSA 188 (270)
T ss_pred EEECCCC
Confidence 9987543
No 417
>PRK08936 glucose-1-dehydrogenase; Provisional
Probab=92.34 E-value=2.7 Score=38.57 Aligned_cols=26 Identities=4% Similarity=0.179 Sum_probs=23.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.+++.|+||+|.+|.+++..|+..+.
T Consensus 7 ~k~~lItGa~~gIG~~ia~~l~~~G~ 32 (261)
T PRK08936 7 GKVVVITGGSTGLGRAMAVRFGKEKA 32 (261)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC
Confidence 46899999999999999999998775
No 418
>PRK07060 short chain dehydrogenase; Provisional
Probab=92.28 E-value=0.52 Score=42.51 Aligned_cols=26 Identities=23% Similarity=0.194 Sum_probs=23.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.+++.|+||+|.+|.+++..|+..+.
T Consensus 9 ~~~~lItGa~g~iG~~~a~~l~~~g~ 34 (245)
T PRK07060 9 GKSVLVTGASSGIGRACAVALAQRGA 34 (245)
T ss_pred CCEEEEeCCcchHHHHHHHHHHHCCC
Confidence 36899999999999999999998774
No 419
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=92.27 E-value=2.5 Score=38.06 Aligned_cols=26 Identities=19% Similarity=0.125 Sum_probs=22.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
..++.|+||+|.+|..++..|+..+.
T Consensus 5 ~~~~lItG~~g~iG~~~a~~l~~~G~ 30 (253)
T PRK08217 5 DKVIVITGGAQGLGRAMAEYLAQKGA 30 (253)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC
Confidence 35899999999999999999988764
No 420
>PRK05872 short chain dehydrogenase; Provisional
Probab=92.21 E-value=2.6 Score=39.89 Aligned_cols=44 Identities=32% Similarity=0.347 Sum_probs=31.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhH
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMEL 149 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL 149 (337)
.+|.|+||+|.||..++..|+..|. .|.+ . +++.+.++..+.++
T Consensus 10 k~vlItGas~gIG~~ia~~l~~~G~-----~V~~--~--~r~~~~l~~~~~~l 53 (296)
T PRK05872 10 KVVVVTGAARGIGAELARRLHARGA-----KLAL--V--DLEEAELAALAAEL 53 (296)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCC-----EEEE--E--eCCHHHHHHHHHHh
Confidence 5899999999999999999998875 2444 2 44555555544444
No 421
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=92.20 E-value=3.4 Score=34.80 Aligned_cols=115 Identities=13% Similarity=0.054 Sum_probs=62.4
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEec-C--c--------
Q 019713 98 NIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGI-N--P-------- 166 (337)
Q Consensus 98 KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t-~--~-------- 166 (337)
.|.|+||+|.+|..++..|+..+-. .+.+ .+.+.+.+.++...-++.... .++.... | +
T Consensus 2 ~~lItGa~~giG~~~a~~l~~~g~~----~v~~--~~r~~~~~~~~~l~~~l~~~~----~~~~~~~~D~~~~~~~~~~~ 71 (167)
T PF00106_consen 2 TVLITGASSGIGRALARALARRGAR----VVIL--TSRSEDSEGAQELIQELKAPG----AKITFIECDLSDPESIRALI 71 (167)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTTE----EEEE--EESSCHHHHHHHHHHHHHHTT----SEEEEEESETTSHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHhcCce----EEEE--eeecccccccccccccccccc----cccccccccccccccccccc
Confidence 5889999999999999999988531 2333 222212344444434444211 1222211 0 1
Q ss_pred ---ccccCCCcEEEEecccCCCCC-C--ch---hhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCC
Q 019713 167 ---YELFEDAEWALLIGAKPRGPG-M--ER---AGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (337)
Q Consensus 167 ---~eal~dADvVIitag~prk~g-~--~R---~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNP 224 (337)
.+....-|++|..+|...... . +. .+.+..|..-.-...+.+.. .+++.||+++-.
T Consensus 72 ~~~~~~~~~ld~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~--~~~g~iv~~sS~ 136 (167)
T PF00106_consen 72 EEVIKRFGPLDILINNAGIFSDGSLDDLSEEELERVFRVNLFGPFLLAKALLP--QGGGKIVNISSI 136 (167)
T ss_dssp HHHHHHHSSESEEEEECSCTTSBSGGGSHHHHHHHHHHHHTHHHHHHHHHHHH--HTTEEEEEEEEG
T ss_pred cccccccccccccccccccccccccccccchhhhhccccccceeeeeeehhee--ccccceEEecch
Confidence 123458899999888654211 1 11 13355554444445555555 246677777743
No 422
>PRK06444 prephenate dehydrogenase; Provisional
Probab=92.19 E-value=0.28 Score=44.63 Aligned_cols=25 Identities=16% Similarity=0.162 Sum_probs=22.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
|||+||||.|.+|..++..+-..|+
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~g~ 25 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDNGL 25 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhCCC
Confidence 5999999999999999999987775
No 423
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=92.18 E-value=0.41 Score=45.75 Aligned_cols=71 Identities=17% Similarity=0.048 Sum_probs=46.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEE-Ee--cCcccccCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVK-IG--INPYELFED 172 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~-i~--t~~~eal~d 172 (337)
..+|.|+|| |.+|.++++.|+..+.- .|.+ .+++.++++..+.++.... .+. +. .+..+.+.+
T Consensus 125 ~k~vlvlGa-GGaarai~~aL~~~G~~----~i~I----~nRt~~ka~~La~~~~~~~-----~~~~~~~~~~~~~~~~~ 190 (282)
T TIGR01809 125 GFRGLVIGA-GGTSRAAVYALASLGVT----DITV----INRNPDKLSRLVDLGVQVG-----VITRLEGDSGGLAIEKA 190 (282)
T ss_pred CceEEEEcC-cHHHHHHHHHHHHcCCC----eEEE----EeCCHHHHHHHHHHhhhcC-----cceeccchhhhhhcccC
Confidence 458999995 99999999999987763 2554 3566777777665543211 111 11 112345688
Q ss_pred CcEEEEec
Q 019713 173 AEWALLIG 180 (337)
Q Consensus 173 ADvVIita 180 (337)
+|+||.+-
T Consensus 191 ~DiVInaT 198 (282)
T TIGR01809 191 AEVLVSTV 198 (282)
T ss_pred CCEEEECC
Confidence 99999864
No 424
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=92.09 E-value=0.37 Score=42.65 Aligned_cols=93 Identities=20% Similarity=0.235 Sum_probs=51.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcE
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADv 175 (337)
-.+|+||| .|.||..+|..+..-|. .|.. + |+...... ...+. .+.. .+..+.++.||+
T Consensus 36 g~tvgIiG-~G~IG~~vA~~l~~fG~-----~V~~--~--d~~~~~~~----~~~~~------~~~~-~~l~ell~~aDi 94 (178)
T PF02826_consen 36 GKTVGIIG-YGRIGRAVARRLKAFGM-----RVIG--Y--DRSPKPEE----GADEF------GVEY-VSLDELLAQADI 94 (178)
T ss_dssp TSEEEEES-TSHHHHHHHHHHHHTT------EEEE--E--ESSCHHHH----HHHHT------TEEE-SSHHHHHHH-SE
T ss_pred CCEEEEEE-EcCCcCeEeeeeecCCc-----eeEE--e--cccCChhh----hcccc------ccee-eehhhhcchhhh
Confidence 46999999 59999999999886554 2332 2 33322221 01111 1222 345678899999
Q ss_pred EEEecc-cCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCC
Q 019713 176 ALLIGA-KPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (337)
Q Consensus 176 VIitag-~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNP 224 (337)
|++... .|...+ ++ |. +.+++. ++++++|+++--
T Consensus 95 v~~~~plt~~T~~-----li--~~-------~~l~~m-k~ga~lvN~aRG 129 (178)
T PF02826_consen 95 VSLHLPLTPETRG-----LI--NA-------EFLAKM-KPGAVLVNVARG 129 (178)
T ss_dssp EEE-SSSSTTTTT-----SB--SH-------HHHHTS-TTTEEEEESSSG
T ss_pred hhhhhccccccce-----ee--ee-------eeeecc-ccceEEEeccch
Confidence 998752 121111 11 11 223343 678999998853
No 425
>PRK12938 acetyacetyl-CoA reductase; Provisional
Probab=92.07 E-value=2.9 Score=37.77 Aligned_cols=25 Identities=20% Similarity=0.202 Sum_probs=22.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
+.+.|+||+|.+|.+++..|+..|.
T Consensus 4 k~~lVtG~s~giG~~~a~~l~~~G~ 28 (246)
T PRK12938 4 RIAYVTGGMGGIGTSICQRLHKDGF 28 (246)
T ss_pred CEEEEECCCChHHHHHHHHHHHcCC
Confidence 4689999999999999999998875
No 426
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.03 E-value=0.58 Score=47.07 Aligned_cols=111 Identities=18% Similarity=0.197 Sum_probs=57.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcE
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADv 175 (337)
.++|.|+|+ |.+|..+|..|+..|. .|.+ .|.+.. +.++....+|.. ...++.......+...++|+
T Consensus 5 ~k~v~iiG~-g~~G~~~A~~l~~~G~-----~V~~--~d~~~~-~~~~~~~~~l~~----~~~~~~~~~~~~~~~~~~d~ 71 (450)
T PRK14106 5 GKKVLVVGA-GVSGLALAKFLKKLGA-----KVIL--TDEKEE-DQLKEALEELGE----LGIELVLGEYPEEFLEGVDL 71 (450)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCC-----EEEE--EeCCch-HHHHHHHHHHHh----cCCEEEeCCcchhHhhcCCE
Confidence 368999996 8899999999999886 2544 333221 223222222321 11122222112244678999
Q ss_pred EEEecccCC-CCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCC
Q 019713 176 ALLIGAKPR-GPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (337)
Q Consensus 176 VIitag~pr-k~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNP 224 (337)
||.+.|.+. .| .....-..+++++.......... + ..+|-+|-.
T Consensus 72 vv~~~g~~~~~~--~~~~a~~~~i~~~~~~~~~~~~~--~-~~vI~ITGS 116 (450)
T PRK14106 72 VVVSPGVPLDSP--PVVQAHKKGIEVIGEVELAYRFS--K-APIVAITGT 116 (450)
T ss_pred EEECCCCCCCCH--HHHHHHHCCCcEEeHHHHHHhhc--C-CCEEEEeCC
Confidence 999887542 22 11111224555555554433332 2 345555543
No 427
>PRK07775 short chain dehydrogenase; Provisional
Probab=91.98 E-value=2.2 Score=39.72 Aligned_cols=26 Identities=27% Similarity=0.215 Sum_probs=23.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.+.|.|+||+|.+|.+++..|+..|.
T Consensus 10 ~~~vlVtGa~g~iG~~la~~L~~~G~ 35 (274)
T PRK07775 10 RRPALVAGASSGIGAATAIELAAAGF 35 (274)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC
Confidence 45899999999999999999998775
No 428
>PLN02996 fatty acyl-CoA reductase
Probab=91.94 E-value=2.5 Score=43.65 Aligned_cols=41 Identities=10% Similarity=-0.018 Sum_probs=27.4
Q ss_pred ccCCCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHh
Q 019713 169 LFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNA 210 (337)
Q Consensus 169 al~dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~ 210 (337)
.++++|+||-+|+... ......+....|+.-...+.+...+
T Consensus 109 l~~~vD~ViH~AA~v~-~~~~~~~~~~~Nv~gt~~ll~~a~~ 149 (491)
T PLN02996 109 MWKEIDIVVNLAATTN-FDERYDVALGINTLGALNVLNFAKK 149 (491)
T ss_pred HHhCCCEEEECccccC-CcCCHHHHHHHHHHHHHHHHHHHHh
Confidence 4578999998886533 2223344567788777777776665
No 429
>PLN03139 formate dehydrogenase; Provisional
Probab=91.94 E-value=0.87 Score=45.70 Aligned_cols=99 Identities=16% Similarity=0.185 Sum_probs=55.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcEE
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADvV 176 (337)
++|+||| .|.||..+|..|..-+. .|. .+| +.....+. .+.. .+....+..+.+++||+|
T Consensus 200 ktVGIVG-~G~IG~~vA~~L~afG~-----~V~--~~d--~~~~~~~~-----~~~~-----g~~~~~~l~ell~~sDvV 259 (386)
T PLN03139 200 KTVGTVG-AGRIGRLLLQRLKPFNC-----NLL--YHD--RLKMDPEL-----EKET-----GAKFEEDLDAMLPKCDVV 259 (386)
T ss_pred CEEEEEe-ecHHHHHHHHHHHHCCC-----EEE--EEC--CCCcchhh-----Hhhc-----CceecCCHHHHHhhCCEE
Confidence 5999999 59999999999876443 232 233 32111110 1100 112223456778999999
Q ss_pred EEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC--CchhHH
Q 019713 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN--PCNTNA 229 (337)
Q Consensus 177 Iitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtN--Pvd~~t 229 (337)
++.. |.. ..+..++. .+.+... ++++++|+++= .+|.-+
T Consensus 260 ~l~l--Plt---------~~T~~li~--~~~l~~m-k~ga~lIN~aRG~iVDe~A 300 (386)
T PLN03139 260 VINT--PLT---------EKTRGMFN--KERIAKM-KKGVLIVNNARGAIMDTQA 300 (386)
T ss_pred EEeC--CCC---------HHHHHHhC--HHHHhhC-CCCeEEEECCCCchhhHHH
Confidence 9874 211 11222221 2344454 78999999873 344443
No 430
>PRK05599 hypothetical protein; Provisional
Probab=91.92 E-value=1.8 Score=39.62 Aligned_cols=45 Identities=24% Similarity=0.351 Sum_probs=31.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhh
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELED 151 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d 151 (337)
|.+.|+||++.+|.+++..|+. +. .|.+. +++.++++..+.++..
T Consensus 1 ~~vlItGas~GIG~aia~~l~~-g~-----~Vil~----~r~~~~~~~~~~~l~~ 45 (246)
T PRK05599 1 MSILILGGTSDIAGEIATLLCH-GE-----DVVLA----ARRPEAAQGLASDLRQ 45 (246)
T ss_pred CeEEEEeCccHHHHHHHHHHhC-CC-----EEEEE----eCCHHHHHHHHHHHHh
Confidence 3588999999999999999984 42 24442 4556666666566653
No 431
>PRK06046 alanine dehydrogenase; Validated
Probab=91.91 E-value=0.61 Score=45.45 Aligned_cols=74 Identities=15% Similarity=0.151 Sum_probs=45.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCc
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dAD 174 (337)
...+|+||| +|.+|...+..+....-+. .+.+ + +++.++++..+.++.+.. ..++....+..+++. +|
T Consensus 128 ~~~~vgiiG-~G~qa~~h~~al~~~~~i~---~v~v--~--~r~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~l~-aD 195 (326)
T PRK06046 128 DSKVVGIIG-AGNQARTQLLALSEVFDLE---EVRV--Y--DRTKSSAEKFVERMSSVV---GCDVTVAEDIEEACD-CD 195 (326)
T ss_pred CCCEEEEEC-CcHHHHHHHHHHHhhCCce---EEEE--E--CCCHHHHHHHHHHHHhhc---CceEEEeCCHHHHhh-CC
Confidence 357999999 5999999888776433221 2443 3 455666666655554321 123555555456665 99
Q ss_pred EEEEec
Q 019713 175 WALLIG 180 (337)
Q Consensus 175 vVIita 180 (337)
+|+++-
T Consensus 196 iVv~aT 201 (326)
T PRK06046 196 ILVTTT 201 (326)
T ss_pred EEEEec
Confidence 998753
No 432
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=91.91 E-value=0.45 Score=47.63 Aligned_cols=25 Identities=20% Similarity=0.320 Sum_probs=21.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
-++|+||| .|+||+.+|..|..-|.
T Consensus 116 gktvGIIG-~G~IG~~vA~~l~a~G~ 140 (378)
T PRK15438 116 DRTVGIVG-VGNVGRRLQARLEALGI 140 (378)
T ss_pred CCEEEEEC-cCHHHHHHHHHHHHCCC
Confidence 46999999 59999999999876554
No 433
>PRK06701 short chain dehydrogenase; Provisional
Probab=91.90 E-value=0.58 Score=44.31 Aligned_cols=26 Identities=12% Similarity=0.054 Sum_probs=23.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.++|.|+||+|.+|.+++..|+..|.
T Consensus 46 ~k~iLItGasggIG~~la~~l~~~G~ 71 (290)
T PRK06701 46 GKVALITGGDSGIGRAVAVLFAKEGA 71 (290)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC
Confidence 36899999999999999999998775
No 434
>TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families.
Probab=91.88 E-value=2.9 Score=37.48 Aligned_cols=24 Identities=25% Similarity=0.271 Sum_probs=21.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCC
Q 019713 98 NIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 98 KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.+.|+||+|.+|.+++..|+..+.
T Consensus 2 ~~lItG~sg~iG~~la~~l~~~G~ 25 (242)
T TIGR01829 2 IALVTGGMGGIGTAICQRLAKDGY 25 (242)
T ss_pred EEEEECCCChHHHHHHHHHHHCCC
Confidence 578999999999999999998775
No 435
>PRK09009 C factor cell-cell signaling protein; Provisional
Probab=91.86 E-value=0.37 Score=43.46 Aligned_cols=24 Identities=25% Similarity=0.390 Sum_probs=21.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGE 120 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~ 120 (337)
|+|.|+||+|.||.+++..|+..+
T Consensus 1 ~~vlItGas~gIG~~ia~~l~~~~ 24 (235)
T PRK09009 1 MNILIVGGSGGIGKAMVKQLLERY 24 (235)
T ss_pred CEEEEECCCChHHHHHHHHHHHhC
Confidence 489999999999999999998864
No 436
>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]
Probab=91.84 E-value=0.96 Score=43.86 Aligned_cols=76 Identities=20% Similarity=0.176 Sum_probs=43.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEe-ccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCC
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKL-LGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDA 173 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L-~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dA 173 (337)
+-.|++-+|-..+|+.++...-+.-|+ .+.+.- -+.+.+++.. ..+.++.. ....+++++.|..++++||
T Consensus 152 ~g~k~a~vGDgNNv~nSl~~~~a~~G~-----dv~ia~Pk~~~p~~~~~-~~a~~~a~---~~g~~i~~t~d~~eAv~gA 222 (310)
T COG0078 152 KGLKLAYVGDGNNVANSLLLAAAKLGM-----DVRIATPKGYEPDPEVV-EKAKENAK---ESGGKITLTEDPEEAVKGA 222 (310)
T ss_pred cCcEEEEEcCcchHHHHHHHHHHHhCC-----eEEEECCCcCCcCHHHH-HHHHHHHH---hcCCeEEEecCHHHHhCCC
Confidence 457999999766677777666555554 133210 0011122221 23322221 1234788998999999999
Q ss_pred cEEEEe
Q 019713 174 EWALLI 179 (337)
Q Consensus 174 DvVIit 179 (337)
|+|..=
T Consensus 223 DvvyTD 228 (310)
T COG0078 223 DVVYTD 228 (310)
T ss_pred CEEEec
Confidence 998763
No 437
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=91.79 E-value=0.87 Score=44.37 Aligned_cols=25 Identities=16% Similarity=0.272 Sum_probs=22.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.||+|+||+|.+|.-++..|...+-
T Consensus 2 ~~v~IvGasGy~G~el~rlL~~HP~ 26 (310)
T TIGR01851 2 PKVFIDGEAGTTGLQIRERLSGRDD 26 (310)
T ss_pred CeEEEECCCChhHHHHHHHHhCCCC
Confidence 4899999999999999999988765
No 438
>PRK08628 short chain dehydrogenase; Provisional
Probab=91.72 E-value=3.8 Score=37.37 Aligned_cols=25 Identities=24% Similarity=0.313 Sum_probs=23.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.+|.|+||+|.+|.+++..|+..+.
T Consensus 8 ~~ilItGasggiG~~la~~l~~~G~ 32 (258)
T PRK08628 8 KVVIVTGGASGIGAAISLRLAEEGA 32 (258)
T ss_pred CEEEEeCCCChHHHHHHHHHHHcCC
Confidence 5899999999999999999998875
No 439
>PRK05693 short chain dehydrogenase; Provisional
Probab=91.60 E-value=3.1 Score=38.51 Aligned_cols=26 Identities=19% Similarity=0.212 Sum_probs=22.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
|++|.|+||+|.+|.+++..|+..|.
T Consensus 1 mk~vlItGasggiG~~la~~l~~~G~ 26 (274)
T PRK05693 1 MPVVLITGCSSGIGRALADAFKAAGY 26 (274)
T ss_pred CCEEEEecCCChHHHHHHHHHHHCCC
Confidence 35799999999999999999988764
No 440
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=91.58 E-value=0.82 Score=44.04 Aligned_cols=67 Identities=16% Similarity=-0.015 Sum_probs=40.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcE
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADv 175 (337)
..||.|+|+ |.+|..++..|...+. .|.+ .+++.++.+ .+.++ . .+.....+..+.++++|+
T Consensus 152 g~kvlViG~-G~iG~~~a~~L~~~Ga-----~V~v----~~r~~~~~~-~~~~~-----G--~~~~~~~~l~~~l~~aDi 213 (296)
T PRK08306 152 GSNVLVLGF-GRTGMTLARTLKALGA-----NVTV----GARKSAHLA-RITEM-----G--LSPFHLSELAEEVGKIDI 213 (296)
T ss_pred CCEEEEECC-cHHHHHHHHHHHHCCC-----EEEE----EECCHHHHH-HHHHc-----C--CeeecHHHHHHHhCCCCE
Confidence 479999995 9999999999987663 2444 244433322 22211 1 111111234567899999
Q ss_pred EEEec
Q 019713 176 ALLIG 180 (337)
Q Consensus 176 VIita 180 (337)
||.+.
T Consensus 214 VI~t~ 218 (296)
T PRK08306 214 IFNTI 218 (296)
T ss_pred EEECC
Confidence 99975
No 441
>PRK07201 short chain dehydrogenase; Provisional
Probab=91.56 E-value=2 Score=45.15 Aligned_cols=45 Identities=22% Similarity=0.316 Sum_probs=31.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHh
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~ 150 (337)
++|.|+||+|.+|.+++..|+..|. .|.+ .+++.+.++....++.
T Consensus 372 k~vlItGas~giG~~la~~l~~~G~-----~V~~----~~r~~~~~~~~~~~~~ 416 (657)
T PRK07201 372 KVVLITGASSGIGRATAIKVAEAGA-----TVFL----VARNGEALDELVAEIR 416 (657)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC-----EEEE----EECCHHHHHHHHHHHH
Confidence 5799999999999999999998774 2443 2445555554444443
No 442
>PRK07831 short chain dehydrogenase; Provisional
Probab=91.54 E-value=3.9 Score=37.51 Aligned_cols=26 Identities=19% Similarity=0.073 Sum_probs=22.3
Q ss_pred CCEEEEEcCCC-chHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAG-MIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG-~VG~~la~~L~~~~l 121 (337)
.+++.|+||+| .+|.+++..|+..|.
T Consensus 17 ~k~vlItG~sg~gIG~~ia~~l~~~G~ 43 (262)
T PRK07831 17 GKVVLVTAAAGTGIGSATARRALEEGA 43 (262)
T ss_pred CCEEEEECCCcccHHHHHHHHHHHcCC
Confidence 35899999877 699999999998775
No 443
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=91.53 E-value=0.58 Score=46.01 Aligned_cols=73 Identities=26% Similarity=0.204 Sum_probs=49.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcE
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADv 175 (337)
...++|||+ |..+..-+..+.. +++- +.|.+ + +++++..+..+.++.+.. ...+....+..+++++||+
T Consensus 130 a~~laiIGa-G~qA~~ql~a~~~--v~~~-~~I~i--~--~r~~~~~e~~a~~l~~~~---~~~v~a~~s~~~av~~aDi 198 (330)
T COG2423 130 ASTLAIIGA-GAQARTQLEALKA--VRDI-REIRV--Y--SRDPEAAEAFAARLRKRG---GEAVGAADSAEEAVEGADI 198 (330)
T ss_pred CcEEEEECC-cHHHHHHHHHHHh--hCCc-cEEEE--E--cCCHHHHHHHHHHHHhhc---CccceeccCHHHHhhcCCE
Confidence 568999995 9888776666543 3321 22444 3 567778888777776543 2245555667899999999
Q ss_pred EEEe
Q 019713 176 ALLI 179 (337)
Q Consensus 176 VIit 179 (337)
|+.+
T Consensus 199 Ivt~ 202 (330)
T COG2423 199 VVTA 202 (330)
T ss_pred EEEe
Confidence 9865
No 444
>PRK08862 short chain dehydrogenase; Provisional
Probab=91.52 E-value=3.9 Score=37.28 Aligned_cols=44 Identities=14% Similarity=0.176 Sum_probs=31.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhH
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMEL 149 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL 149 (337)
+.+.|+||++.+|.+++..|+..|. .|.+ . +++.++++....++
T Consensus 6 k~~lVtGas~GIG~aia~~la~~G~-----~V~~--~--~r~~~~l~~~~~~i 49 (227)
T PRK08862 6 SIILITSAGSVLGRTISCHFARLGA-----TLIL--C--DQDQSALKDTYEQC 49 (227)
T ss_pred eEEEEECCccHHHHHHHHHHHHCCC-----EEEE--E--cCCHHHHHHHHHHH
Confidence 5799999999999999999998875 2444 2 44556665544444
No 445
>PRK07411 hypothetical protein; Validated
Probab=91.46 E-value=0.71 Score=46.28 Aligned_cols=25 Identities=28% Similarity=0.445 Sum_probs=23.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
..||.|||+ |.+|+.++..|+..|+
T Consensus 38 ~~~VlivG~-GGlG~~va~~La~~Gv 62 (390)
T PRK07411 38 AASVLCIGT-GGLGSPLLLYLAAAGI 62 (390)
T ss_pred cCcEEEECC-CHHHHHHHHHHHHcCC
Confidence 369999995 9999999999999998
No 446
>PRK08226 short chain dehydrogenase; Provisional
Probab=91.44 E-value=1.8 Score=39.58 Aligned_cols=26 Identities=15% Similarity=0.048 Sum_probs=23.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.+++.|+||+|.+|.+++..|+..|.
T Consensus 6 ~~~~lItG~s~giG~~la~~l~~~G~ 31 (263)
T PRK08226 6 GKTALITGALQGIGEGIARVFARHGA 31 (263)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC
Confidence 36899999999999999999998775
No 447
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=91.37 E-value=0.73 Score=45.78 Aligned_cols=25 Identities=28% Similarity=0.333 Sum_probs=22.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
..||.|+|+ |.+|+.++..|+..|+
T Consensus 135 ~~~VlvvG~-GG~Gs~ia~~La~~Gv 159 (376)
T PRK08762 135 EARVLLIGA-GGLGSPAALYLAAAGV 159 (376)
T ss_pred cCcEEEECC-CHHHHHHHHHHHHcCC
Confidence 468999995 9999999999999997
No 448
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=91.35 E-value=3.4 Score=40.79 Aligned_cols=128 Identities=25% Similarity=0.167 Sum_probs=68.7
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEe---cCccccc
Q 019713 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG---INPYELF 170 (337)
Q Consensus 94 ~~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~---t~~~eal 170 (337)
++-.+|+|+|+ |-+|....+.....+ + .|.. +++++++++ .+.+|- ....+. .+..+++
T Consensus 165 ~pG~~V~I~G~-GGlGh~avQ~Aka~g-a----~Via----~~~~~~K~e-~a~~lG-------Ad~~i~~~~~~~~~~~ 226 (339)
T COG1064 165 KPGKWVAVVGA-GGLGHMAVQYAKAMG-A----EVIA----ITRSEEKLE-LAKKLG-------ADHVINSSDSDALEAV 226 (339)
T ss_pred CCCCEEEEECC-cHHHHHHHHHHHHcC-C----eEEE----EeCChHHHH-HHHHhC-------CcEEEEcCCchhhHHh
Confidence 34579999995 888877666655455 2 2433 356666664 344332 122222 1223444
Q ss_pred CC-CcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCc-hhHH-H-HHHHHCCCCCCCeEE-
Q 019713 171 ED-AEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC-NTNA-L-ICLKNAPSIPAKNFH- 245 (337)
Q Consensus 171 ~d-ADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPv-d~~t-~-i~~k~s~~~p~kvIG- 245 (337)
++ +|+||.+++ + .-+....+.+ .+++.++.+++|- ..+. . +..-....+ ++.|
T Consensus 227 ~~~~d~ii~tv~-~---------------~~~~~~l~~l----~~~G~~v~vG~~~~~~~~~~~~~~li~~~~--~i~GS 284 (339)
T COG1064 227 KEIADAIIDTVG-P---------------ATLEPSLKAL----RRGGTLVLVGLPGGGPIPLLPAFLLILKEI--SIVGS 284 (339)
T ss_pred HhhCcEEEECCC-h---------------hhHHHHHHHH----hcCCEEEEECCCCCcccCCCCHHHhhhcCe--EEEEE
Confidence 43 999999875 2 1233344433 4678999999994 3322 1 111111111 4555
Q ss_pred -ecCchhHHHHHHHHHH
Q 019713 246 -ALTRLDENRAKCQLAL 261 (337)
Q Consensus 246 -~gT~LDs~R~~~~lA~ 261 (337)
.||.-|+..+-.+.++
T Consensus 285 ~~g~~~d~~e~l~f~~~ 301 (339)
T COG1064 285 LVGTRADLEEALDFAAE 301 (339)
T ss_pred ecCCHHHHHHHHHHHHh
Confidence 4567776655555444
No 449
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=91.33 E-value=1.1 Score=39.84 Aligned_cols=66 Identities=21% Similarity=0.243 Sum_probs=38.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCc
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dAD 174 (337)
+.++|+|||. |.-|.+-|..|-..++ .|.+-+..-..+.++++ ++. +++ .+..|+.+.||
T Consensus 3 ~~k~IAViGy-GsQG~a~AlNLrDSG~-----~V~Vglr~~s~s~~~A~------~~G-------f~v-~~~~eAv~~aD 62 (165)
T PF07991_consen 3 KGKTIAVIGY-GSQGHAHALNLRDSGV-----NVIVGLREGSASWEKAK------ADG-------FEV-MSVAEAVKKAD 62 (165)
T ss_dssp CTSEEEEES--SHHHHHHHHHHHHCC------EEEEEE-TTCHHHHHHH------HTT--------EC-CEHHHHHHC-S
T ss_pred CCCEEEEECC-ChHHHHHHHHHHhCCC-----CEEEEecCCCcCHHHHH------HCC-------Cee-ccHHHHHhhCC
Confidence 3469999995 9999999999998887 25544322111111111 111 122 13468999999
Q ss_pred EEEEec
Q 019713 175 WALLIG 180 (337)
Q Consensus 175 vVIita 180 (337)
+|++..
T Consensus 63 vV~~L~ 68 (165)
T PF07991_consen 63 VVMLLL 68 (165)
T ss_dssp EEEE-S
T ss_pred EEEEeC
Confidence 998874
No 450
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=91.31 E-value=0.2 Score=46.88 Aligned_cols=24 Identities=29% Similarity=0.409 Sum_probs=21.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCC
Q 019713 98 NIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 98 KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
||.|+||+|++|++++..|...+.
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g~ 24 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAASV 24 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCCC
Confidence 589999999999999999988764
No 451
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=91.30 E-value=0.79 Score=45.93 Aligned_cols=24 Identities=38% Similarity=0.468 Sum_probs=22.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.||.|||+ |.+|+.++..|+..|+
T Consensus 43 ~~VlviG~-GGlGs~va~~La~~Gv 66 (392)
T PRK07878 43 ARVLVIGA-GGLGSPTLLYLAAAGV 66 (392)
T ss_pred CCEEEECC-CHHHHHHHHHHHHcCC
Confidence 59999995 9999999999999997
No 452
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=91.10 E-value=1.5 Score=42.47 Aligned_cols=73 Identities=19% Similarity=0.177 Sum_probs=43.9
Q ss_pred CCCEEEEEcCC--CchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCC
Q 019713 95 KMVNIAVSGAA--GMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFED 172 (337)
Q Consensus 95 ~~~KI~IIGAa--G~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~d 172 (337)
+-.||+++|-. ++|..+++..++.-|. .+.+ .. +...+.-......+++ ...+++++.+..++++|
T Consensus 149 ~g~~va~vGD~~~~~v~~Sl~~~~a~~g~-----~v~~--~~-P~~~~~~~~~~~~~~~----~G~~v~~~~d~~~a~~~ 216 (301)
T TIGR00670 149 DGLKIALVGDLKYGRTVHSLAEALTRFGV-----EVYL--IS-PEELRMPKEILEELKA----KGIKVRETESLEEVIDE 216 (301)
T ss_pred CCCEEEEEccCCCCcHHHHHHHHHHHcCC-----EEEE--EC-CccccCCHHHHHHHHH----cCCEEEEECCHHHHhCC
Confidence 34799999953 5899998888877654 2333 22 2211111111111111 22467788888899999
Q ss_pred CcEEEEe
Q 019713 173 AEWALLI 179 (337)
Q Consensus 173 ADvVIit 179 (337)
||+|...
T Consensus 217 aDvvyt~ 223 (301)
T TIGR00670 217 ADVLYVT 223 (301)
T ss_pred CCEEEEC
Confidence 9998774
No 453
>PLN02503 fatty acyl-CoA reductase 2
Probab=91.09 E-value=7.3 Score=41.44 Aligned_cols=28 Identities=25% Similarity=0.428 Sum_probs=23.4
Q ss_pred ccCCCEEEEEcCCCchHHHHHHHHHHcC
Q 019713 93 WKKMVNIAVSGAAGMIANHLLFKLAAGE 120 (337)
Q Consensus 93 ~~~~~KI~IIGAaG~VG~~la~~L~~~~ 120 (337)
.-+.++|-|+||+|++|..++..|+...
T Consensus 116 f~~~k~VlVTGaTGFLGk~LlekLLr~~ 143 (605)
T PLN02503 116 FLRGKNFLITGATGFLAKVLIEKILRTN 143 (605)
T ss_pred hhcCCEEEEcCCchHHHHHHHHHHHHhC
Confidence 3456799999999999999999988643
No 454
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=91.05 E-value=0.82 Score=45.19 Aligned_cols=76 Identities=21% Similarity=0.232 Sum_probs=46.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccc-----------------hhhHHHhHHHhHhhhccCCcc
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSER-----------------SLQALEGVAMELEDSLFPLLR 158 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~-----------------~~~~l~g~a~DL~d~~~~~~~ 158 (337)
..||.|+|+ |.+|+.++..|+..|+- + +.| +|.|. ...|++..+..|.+.. |. .
T Consensus 28 ~~~VlivG~-GGlGs~~a~~La~~Gvg-~---i~l--vD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~n-p~-v 98 (355)
T PRK05597 28 DAKVAVIGA-GGLGSPALLYLAGAGVG-H---ITI--IDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALN-PD-V 98 (355)
T ss_pred CCeEEEECC-CHHHHHHHHHHHHcCCC-e---EEE--EeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHC-CC-c
Confidence 369999995 99999999999999983 2 444 44443 1234444444444332 21 1
Q ss_pred cEEEec-----C-cccccCCCcEEEEec
Q 019713 159 EVKIGI-----N-PYELFEDAEWALLIG 180 (337)
Q Consensus 159 ~v~i~t-----~-~~eal~dADvVIita 180 (337)
+++... + ..+-++++|+||.+.
T Consensus 99 ~v~~~~~~i~~~~~~~~~~~~DvVvd~~ 126 (355)
T PRK05597 99 KVTVSVRRLTWSNALDELRDADVILDGS 126 (355)
T ss_pred EEEEEEeecCHHHHHHHHhCCCEEEECC
Confidence 232211 1 134578999999875
No 455
>PLN02858 fructose-bisphosphate aldolase
Probab=91.03 E-value=0.86 Score=52.78 Aligned_cols=65 Identities=15% Similarity=0.041 Sum_probs=44.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcE
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADv 175 (337)
..||++|| .|.||..+|..|+..|. .+.. + |++.++.+.. .+.. ........+..++||+
T Consensus 4 ~~~IGfIG-LG~MG~~mA~~L~~~G~-----~v~v--~--dr~~~~~~~l----~~~G------a~~~~s~~e~a~~adv 63 (1378)
T PLN02858 4 AGVVGFVG-LDSLSFELASSLLRSGF-----KVQA--F--EISTPLMEKF----CELG------GHRCDSPAEAAKDAAA 63 (1378)
T ss_pred CCeEEEEc-hhHHHHHHHHHHHHCCC-----eEEE--E--cCCHHHHHHH----HHcC------CeecCCHHHHHhcCCE
Confidence 46899999 69999999999998775 2433 3 4555555433 2211 2233456678889999
Q ss_pred EEEec
Q 019713 176 ALLIG 180 (337)
Q Consensus 176 VIita 180 (337)
||++.
T Consensus 64 Vi~~l 68 (1378)
T PLN02858 64 LVVVL 68 (1378)
T ss_pred EEEEc
Confidence 99864
No 456
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=91.01 E-value=0.65 Score=46.49 Aligned_cols=25 Identities=24% Similarity=0.197 Sum_probs=21.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
-++|+||| .|+||..++..+..-|.
T Consensus 116 gktvGIIG-~G~IG~~va~~l~a~G~ 140 (381)
T PRK00257 116 ERTYGVVG-AGHVGGRLVRVLRGLGW 140 (381)
T ss_pred cCEEEEEC-CCHHHHHHHHHHHHCCC
Confidence 36899999 59999999999876554
No 457
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=90.99 E-value=0.91 Score=44.27 Aligned_cols=23 Identities=35% Similarity=0.391 Sum_probs=21.4
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCC
Q 019713 98 NIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 98 KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
||.|||+ |.+|..++..|+..|+
T Consensus 1 kVlIVGa-GGlG~EiaKnLal~Gv 23 (312)
T cd01489 1 KVLVVGA-GGIGCELLKNLVLTGF 23 (312)
T ss_pred CEEEECC-CHHHHHHHHHHHHhcC
Confidence 6899995 9999999999999997
No 458
>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein. Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.
Probab=90.99 E-value=0.64 Score=49.12 Aligned_cols=81 Identities=19% Similarity=0.234 Sum_probs=47.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHH--hHHHhHhhhccCCcccEE-----EecCcc
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALE--GVAMELEDSLFPLLREVK-----IGINPY 167 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~--g~a~DL~d~~~~~~~~v~-----i~t~~~ 167 (337)
+..||+|+| +|.+|++++..|+..|+-. +.. +|.|.....+. |+..++.... ....++. ...+..
T Consensus 128 R~akVlVlG-~Gg~~s~lv~sL~~sG~~~----I~~--vd~D~v~SNlnRIgEl~e~A~~~-n~~v~v~~i~~~~~~dl~ 199 (637)
T TIGR03693 128 RNAKILAAG-SGDFLTKLVRSLIDSGFPR----FHA--IVTDAEEHALDRIHELAEIAEET-DDALLVQEIDFAEDQHLH 199 (637)
T ss_pred hcccEEEEe-cCchHHHHHHHHHhcCCCc----EEE--EeccccchhhhHHHHHHHHHHHh-CCCCceEeccCCcchhHH
Confidence 446999999 6999999999999999842 433 33443222222 1112222211 1111111 122346
Q ss_pred cccCCCcEEEEecccC
Q 019713 168 ELFEDAEWALLIGAKP 183 (337)
Q Consensus 168 eal~dADvVIitag~p 183 (337)
+.+++.|+||.++..|
T Consensus 200 ev~~~~DiVi~vsDdy 215 (637)
T TIGR03693 200 EAFEPADWVLYVSDNG 215 (637)
T ss_pred HhhcCCcEEEEECCCC
Confidence 8899999999987654
No 459
>KOG2666 consensus UDP-glucose/GDP-mannose dehydrogenase [Carbohydrate transport and metabolism; Signal transduction mechanisms]
Probab=90.98 E-value=1.6 Score=42.87 Aligned_cols=78 Identities=14% Similarity=0.204 Sum_probs=46.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHh------------HhhhccCCcccEEEe
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAME------------LEDSLFPLLREVKIG 163 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~D------------L~d~~~~~~~~v~i~ 163 (337)
++||+-||| |.||......++..- . .|++.++|+ +..+..++--| ..+|. ..+.-..
T Consensus 1 ~~kicciga-gyvggptcavia~kc--p---~i~vtvvd~--s~~ri~~wnsd~lpiyepgldevv~~cr---gknlffs 69 (481)
T KOG2666|consen 1 MVKICCIGA-GYVGGPTCAVIALKC--P---DIEVTVVDI--SVPRINAWNSDKLPIYEPGLDEVVKQCR---GKNLFFS 69 (481)
T ss_pred CceEEEecC-cccCCcchheeeecC--C---ceEEEEEec--CchHhhcccCCCCcccCCCHHHHHHHhc---CCceeee
Confidence 579999995 999987554443321 1 255555554 33332221111 11221 2345566
Q ss_pred cCcccccCCCcEEEEecccCC
Q 019713 164 INPYELFEDAEWALLIGAKPR 184 (337)
Q Consensus 164 t~~~eal~dADvVIitag~pr 184 (337)
+|-..+++.||+|++....|.
T Consensus 70 tdiekai~eadlvfisvntpt 90 (481)
T KOG2666|consen 70 TDIEKAIKEADLVFISVNTPT 90 (481)
T ss_pred cchHHHhhhcceEEEEecCCc
Confidence 777899999999999876664
No 460
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=90.89 E-value=5.4 Score=42.26 Aligned_cols=135 Identities=13% Similarity=0.071 Sum_probs=74.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecC-c-----cccc
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGIN-P-----YELF 170 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~-~-----~eal 170 (337)
.+|.|+|. |.+|+.++..|...+. ++.+ +|.|+++.+. +++.. .++..++. + ...+
T Consensus 401 ~~vII~G~-Gr~G~~va~~L~~~g~-----~vvv----ID~d~~~v~~----~~~~g----~~v~~GDat~~~~L~~agi 462 (601)
T PRK03659 401 PQVIIVGF-GRFGQVIGRLLMANKM-----RITV----LERDISAVNL----MRKYG----YKVYYGDATQLELLRAAGA 462 (601)
T ss_pred CCEEEecC-chHHHHHHHHHHhCCC-----CEEE----EECCHHHHHH----HHhCC----CeEEEeeCCCHHHHHhcCC
Confidence 58999995 9999999999987765 2443 3555555542 22211 22333321 1 2457
Q ss_pred CCCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEE-eCCCchhHHHHHHHHCCCCCCCeEEecCc
Q 019713 171 EDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIV-VGNPCNTNALICLKNAPSIPAKNFHALTR 249 (337)
Q Consensus 171 ~dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIv-vtNPvd~~t~i~~k~s~~~p~kvIG~gT~ 249 (337)
.+||.+|++-+.+ ..|.. ++..+++. .|+..++. +.||.+. ..+.+ . +.+ +++ --|.
T Consensus 463 ~~A~~vv~~~~d~-----------~~n~~----i~~~~r~~-~p~~~IiaRa~~~~~~--~~L~~-~-Ga~-~vv-~e~~ 520 (601)
T PRK03659 463 EKAEAIVITCNEP-----------EDTMK----IVELCQQH-FPHLHILARARGRVEA--HELLQ-A-GVT-QFS-RETF 520 (601)
T ss_pred ccCCEEEEEeCCH-----------HHHHH----HHHHHHHH-CCCCeEEEEeCCHHHH--HHHHh-C-CCC-EEE-ccHH
Confidence 7999988875321 33433 44455666 68766554 4455333 22333 3 332 222 2222
Q ss_pred hhHHHHHHHHHHHhCCCccccc
Q 019713 250 LDENRAKCQLALKAGVFYDKVS 271 (337)
Q Consensus 250 LDs~R~~~~lA~~lgv~~~~V~ 271 (337)
.-+.++-...=..+|++++++.
T Consensus 521 es~l~l~~~~L~~lg~~~~~~~ 542 (601)
T PRK03659 521 SSALELGRKTLVSLGMHPHQAQ 542 (601)
T ss_pred HHHHHHHHHHHHHcCCCHHHHH
Confidence 2234566666677888887774
No 461
>TIGR01289 LPOR light-dependent protochlorophyllide reductase. This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form.
Probab=90.87 E-value=4.1 Score=39.00 Aligned_cols=24 Identities=21% Similarity=0.162 Sum_probs=21.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGE 120 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~ 120 (337)
+.+.|+||++.||.+++..|+..|
T Consensus 4 k~vlITGas~GIG~aia~~L~~~G 27 (314)
T TIGR01289 4 PTVIITGASSGLGLYAAKALAATG 27 (314)
T ss_pred CEEEEECCCChHHHHHHHHHHHcC
Confidence 478999999999999999999877
No 462
>PRK06114 short chain dehydrogenase; Provisional
Probab=90.81 E-value=1.1 Score=41.03 Aligned_cols=25 Identities=24% Similarity=0.239 Sum_probs=22.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
+++.|+||+|.||.+++..|+..|.
T Consensus 9 k~~lVtG~s~gIG~~ia~~l~~~G~ 33 (254)
T PRK06114 9 QVAFVTGAGSGIGQRIAIGLAQAGA 33 (254)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCC
Confidence 5799999999999999999998775
No 463
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=90.73 E-value=1 Score=44.90 Aligned_cols=25 Identities=28% Similarity=0.320 Sum_probs=22.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
..||.|||+ |.+|+.++..|+..|+
T Consensus 41 ~~~VliiG~-GglG~~v~~~La~~Gv 65 (370)
T PRK05600 41 NARVLVIGA-GGLGCPAMQSLASAGV 65 (370)
T ss_pred CCcEEEECC-CHHHHHHHHHHHHcCC
Confidence 358999995 9999999999999887
No 464
>PRK13529 malate dehydrogenase; Provisional
Probab=90.70 E-value=0.52 Score=49.33 Aligned_cols=124 Identities=13% Similarity=0.088 Sum_probs=68.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHH----cCCCCCCCceEEEeccccc--hhh--HHHhHHHhHhhhccCCcc--cEEEecCc
Q 019713 97 VNIAVSGAAGMIANHLLFKLAA----GEVLGPDQPIALKLLGSER--SLQ--ALEGVAMELEDSLFPLLR--EVKIGINP 166 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~----~~l~~e~~~v~L~L~d~d~--~~~--~l~g~a~DL~d~~~~~~~--~v~i~t~~ 166 (337)
.||.|.|| |..|-++|..|.. .|+-.++-.-.+.++|..- ..+ .+......+.+...+... .-....+.
T Consensus 296 ~riv~~GA-GsAgiGia~ll~~~~~~~Gl~~eeA~~~i~~vD~~GLl~~~r~~l~~~k~~fa~~~~~~~~~~~~~~~~~L 374 (563)
T PRK13529 296 QRIVFLGA-GSAGCGIADQIVAAMVREGLSEEEARKRFFMVDRQGLLTDDMPDLLDFQKPYARKREELADWDTEGDVISL 374 (563)
T ss_pred cEEEEECC-CHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCCeEeCCCCcchHHHHHHhhhcccccccccccCCCCH
Confidence 59999995 9999999988876 4653211112445555431 011 122111222211101000 00011346
Q ss_pred ccccCCC--cEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCch---hHHHHHHHHC
Q 019713 167 YELFEDA--EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCN---TNALICLKNA 236 (337)
Q Consensus 167 ~eal~dA--DvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd---~~t~i~~k~s 236 (337)
.++++++ |+.|=+.+.| | .+-+++.+.|.++ ++..+|.-.|||.. ....-+++++
T Consensus 375 ~e~v~~~kPtvLIG~S~~~---g-----------~Ft~evv~~Ma~~-~erPIIFaLSNPt~~aE~tpe~a~~~T 434 (563)
T PRK13529 375 LEVVRNVKPTVLIGVSGQP---G-----------AFTEEIVKEMAAH-CERPIIFPLSNPTSRAEATPEDLIAWT 434 (563)
T ss_pred HHHHhccCCCEEEEecCCC---C-----------CCCHHHHHHHHhc-CCCCEEEECCCcCCCcccCHHHHHHhh
Confidence 7899998 8887654433 2 1225667777777 67889999999974 4555555654
No 465
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=90.53 E-value=1.9 Score=42.37 Aligned_cols=24 Identities=13% Similarity=0.198 Sum_probs=20.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGE 120 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~ 120 (337)
++||+|+| .|+||...+..+....
T Consensus 3 kIRVgIVG-~GnIGr~~a~al~~~p 26 (324)
T TIGR01921 3 KIRAAIVG-YGNLGRSVEKAIQQQP 26 (324)
T ss_pred CcEEEEEe-ecHHHHHHHHHHHhCC
Confidence 48999999 5999999988887653
No 466
>PRK08278 short chain dehydrogenase; Provisional
Probab=90.50 E-value=6.1 Score=36.76 Aligned_cols=26 Identities=15% Similarity=0.169 Sum_probs=23.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.+++.|+||+|.+|.+++..|+..+.
T Consensus 6 ~k~vlItGas~gIG~~ia~~l~~~G~ 31 (273)
T PRK08278 6 GKTLFITGASRGIGLAIALRAARDGA 31 (273)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC
Confidence 35899999999999999999998774
No 467
>PLN00016 RNA-binding protein; Provisional
Probab=90.48 E-value=2 Score=42.30 Aligned_cols=26 Identities=15% Similarity=0.148 Sum_probs=23.4
Q ss_pred CCEEEEE----cCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVS----GAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~II----GAaG~VG~~la~~L~~~~l 121 (337)
++||.|+ ||+|+||++++..|+..|.
T Consensus 52 ~~~VLVt~~~~GatG~iG~~lv~~L~~~G~ 81 (378)
T PLN00016 52 KKKVLIVNTNSGGHAFIGFYLAKELVKAGH 81 (378)
T ss_pred cceEEEEeccCCCceeEhHHHHHHHHHCCC
Confidence 4689999 9999999999999998774
No 468
>PRK06436 glycerate dehydrogenase; Provisional
Probab=90.47 E-value=0.63 Score=45.08 Aligned_cols=95 Identities=20% Similarity=0.351 Sum_probs=53.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcEE
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADvV 176 (337)
++|+||| .|.||..+|..+..-|. .|. -+ ++.... .+ . . ....+..+.++.||+|
T Consensus 123 ktvgIiG-~G~IG~~vA~~l~afG~-----~V~--~~--~r~~~~-~~--------~-----~-~~~~~l~ell~~aDiv 177 (303)
T PRK06436 123 KSLGILG-YGGIGRRVALLAKAFGM-----NIY--AY--TRSYVN-DG--------I-----S-SIYMEPEDIMKKSDFV 177 (303)
T ss_pred CEEEEEC-cCHHHHHHHHHHHHCCC-----EEE--EE--CCCCcc-cC--------c-----c-cccCCHHHHHhhCCEE
Confidence 6999999 69999999987654343 132 22 332110 00 0 0 0112456778999999
Q ss_pred EEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeC--CCchhHHH
Q 019713 177 LLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVG--NPCNTNAL 230 (337)
Q Consensus 177 Iitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvt--NPvd~~t~ 230 (337)
++.... .+ +...++ | .+.++.. .|++++|+++ .++|.-+.
T Consensus 178 ~~~lp~--t~--~T~~li--~-------~~~l~~m-k~ga~lIN~sRG~~vd~~aL 219 (303)
T PRK06436 178 LISLPL--TD--ETRGMI--N-------SKMLSLF-RKGLAIINVARADVVDKNDM 219 (303)
T ss_pred EECCCC--Cc--hhhcCc--C-------HHHHhcC-CCCeEEEECCCccccCHHHH
Confidence 987521 11 111111 1 2334443 6899999988 45666554
No 469
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=90.46 E-value=0.87 Score=47.41 Aligned_cols=63 Identities=19% Similarity=0.146 Sum_probs=38.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcEE
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADvV 176 (337)
++|+||| .|.||..+|..|..-|. .|. .+|.....+. +.++ .+....+..+.+++||+|
T Consensus 139 ktvgIiG-~G~IG~~vA~~l~~fG~-----~V~--~~d~~~~~~~----~~~~---------g~~~~~~l~ell~~aDvV 197 (525)
T TIGR01327 139 KTLGVIG-LGRIGSIVAKRAKAFGM-----KVL--AYDPYISPER----AEQL---------GVELVDDLDELLARADFI 197 (525)
T ss_pred CEEEEEC-CCHHHHHHHHHHHhCCC-----EEE--EECCCCChhH----HHhc---------CCEEcCCHHHHHhhCCEE
Confidence 5899999 69999999999875443 132 2332111111 1111 112223456788999999
Q ss_pred EEec
Q 019713 177 LLIG 180 (337)
Q Consensus 177 Iita 180 (337)
++..
T Consensus 198 ~l~l 201 (525)
T TIGR01327 198 TVHT 201 (525)
T ss_pred EEcc
Confidence 9875
No 470
>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
Probab=90.44 E-value=1.3 Score=47.55 Aligned_cols=25 Identities=32% Similarity=0.264 Sum_probs=22.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
++|.|+||+|.||.+++..|+..|.
T Consensus 415 kvvLVTGasggIG~aiA~~La~~Ga 439 (676)
T TIGR02632 415 RVAFVTGGAGGIGRETARRLAAEGA 439 (676)
T ss_pred CEEEEeCCCcHHHHHHHHHHHhCCC
Confidence 5799999999999999999998775
No 471
>PTZ00317 NADP-dependent malic enzyme; Provisional
Probab=90.42 E-value=0.52 Score=49.26 Aligned_cols=122 Identities=16% Similarity=0.059 Sum_probs=69.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHH----cCCCCCCCceEEEeccccc--hh---hHHHhHHHhHhhhccCCcccEEEecCcc
Q 019713 97 VNIAVSGAAGMIANHLLFKLAA----GEVLGPDQPIALKLLGSER--SL---QALEGVAMELEDSLFPLLREVKIGINPY 167 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~----~~l~~e~~~v~L~L~d~d~--~~---~~l~g~a~DL~d~~~~~~~~v~i~t~~~ 167 (337)
.||.+.|| |..|-.+|..|.. .|+-.++-.-.+.++|..- .. +.+......+.+.... .......+..
T Consensus 298 ~riv~~GA-GsAgiGia~ll~~~m~~~Gls~eeA~~~i~~vD~~GLl~~~r~~~l~~~k~~fa~~~~~--~~~~~~~~L~ 374 (559)
T PTZ00317 298 QRIVFFGA-GSAAIGVANNIADLAAEYGVTREEALKSFYLVDSKGLVTTTRGDKLAKHKVPFARTDIS--AEDSSLKTLE 374 (559)
T ss_pred cEEEEECC-CHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCCeEeCCCCccccHHHHHHhccccc--cccccCCCHH
Confidence 59999995 9999999988773 5653211112445555431 01 1121111212211100 0000123577
Q ss_pred cccCCC--cEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCc---hhHHHHHHHHC
Q 019713 168 ELFEDA--EWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPC---NTNALICLKNA 236 (337)
Q Consensus 168 eal~dA--DvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPv---d~~t~i~~k~s 236 (337)
++++++ |+.|=+.+.| | .+-+++.+.|.++ ++..+|.-.|||. +....-+++++
T Consensus 375 e~v~~~KPtvLIG~S~~~---g-----------~Ft~evv~~Ma~~-~~rPIIFaLSNPt~~aE~tpeda~~~T 433 (559)
T PTZ00317 375 DVVRFVKPTALLGLSGVG---G-----------VFTEEVVKTMASN-VERPIIFPLSNPTSKAECTAEDAYKWT 433 (559)
T ss_pred HHHhccCCCEEEEecCCC---C-----------CCCHHHHHHHHhc-CCCCEEEECCCCCCCCCcCHHHHHhhc
Confidence 899999 9888655433 2 1235677778887 6888999999996 55555566654
No 472
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=90.34 E-value=1.2 Score=45.38 Aligned_cols=91 Identities=11% Similarity=0.093 Sum_probs=52.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCc
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dAD 174 (337)
.-.+|+|+|+ |.+|..++..+...|. .|.+ +| .++.++...+++ .. . + .+..++++++|
T Consensus 211 ~Gk~VlViG~-G~IG~~vA~~lr~~Ga-----~ViV--~d--~dp~ra~~A~~~------G~--~--v-~~l~eal~~aD 269 (425)
T PRK05476 211 AGKVVVVAGY-GDVGKGCAQRLRGLGA-----RVIV--TE--VDPICALQAAMD------GF--R--V-MTMEEAAELGD 269 (425)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCC-----EEEE--Ec--CCchhhHHHHhc------CC--E--e-cCHHHHHhCCC
Confidence 3468999995 9999999999887664 2443 33 333333211111 11 1 1 12346788999
Q ss_pred EEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCC
Q 019713 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (337)
Q Consensus 175 vVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNP 224 (337)
+||.+.|. ..++.. +.+... ++++++++++-+
T Consensus 270 VVI~aTG~---------------~~vI~~--~~~~~m-K~GailiNvG~~ 301 (425)
T PRK05476 270 IFVTATGN---------------KDVITA--EHMEAM-KDGAILANIGHF 301 (425)
T ss_pred EEEECCCC---------------HHHHHH--HHHhcC-CCCCEEEEcCCC
Confidence 99886532 223321 122232 578899998854
No 473
>PRK07856 short chain dehydrogenase; Provisional
Probab=90.34 E-value=0.89 Score=41.55 Aligned_cols=26 Identities=15% Similarity=0.080 Sum_probs=23.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.+++.|+||+|.+|.+++..|+..+.
T Consensus 6 ~k~~lItGas~gIG~~la~~l~~~g~ 31 (252)
T PRK07856 6 GRVVLVTGGTRGIGAGIARAFLAAGA 31 (252)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC
Confidence 36899999999999999999998775
No 474
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=90.16 E-value=1.7 Score=39.82 Aligned_cols=25 Identities=16% Similarity=0.185 Sum_probs=22.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
+.+.|+||+|.||.+++..|+..|.
T Consensus 11 k~~lItG~~~gIG~a~a~~l~~~G~ 35 (253)
T PRK08993 11 KVAVVTGCDTGLGQGMALGLAEAGC 35 (253)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCC
Confidence 5799999999999999999998775
No 475
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=90.07 E-value=5.5 Score=42.37 Aligned_cols=136 Identities=11% Similarity=0.018 Sum_probs=74.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecC-c-----cccc
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGIN-P-----YELF 170 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~-~-----~eal 170 (337)
.+|.|+|. |.+|+.++..|...++ ++.+ +|.++++.+.. .+. ..++..++. + ...+
T Consensus 401 ~~vII~G~-Gr~G~~va~~L~~~g~-----~vvv----ID~d~~~v~~~----~~~----g~~v~~GDat~~~~L~~agi 462 (621)
T PRK03562 401 PRVIIAGF-GRFGQIVGRLLLSSGV-----KMTV----LDHDPDHIETL----RKF----GMKVFYGDATRMDLLESAGA 462 (621)
T ss_pred CcEEEEec-ChHHHHHHHHHHhCCC-----CEEE----EECCHHHHHHH----Hhc----CCeEEEEeCCCHHHHHhcCC
Confidence 58999995 9999999999988765 2443 35555555432 111 113333321 1 2457
Q ss_pred CCCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHHHHHHHHCCCCCCCeEEecCch
Q 019713 171 EDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRL 250 (337)
Q Consensus 171 ~dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t~i~~k~s~~~p~kvIG~gT~L 250 (337)
.+||.||++-+.+ +.|.. ++..+++. .|+..+++-++-.+ ..+.+ +.. +.+ .+---+..
T Consensus 463 ~~A~~vvv~~~d~-----------~~n~~----i~~~ar~~-~p~~~iiaRa~d~~-~~~~L-~~~-Gad--~v~~e~~e 521 (621)
T PRK03562 463 AKAEVLINAIDDP-----------QTSLQ----LVELVKEH-FPHLQIIARARDVD-HYIRL-RQA-GVE--KPERETFE 521 (621)
T ss_pred CcCCEEEEEeCCH-----------HHHHH----HHHHHHHh-CCCCeEEEEECCHH-HHHHH-HHC-CCC--EEehhhHh
Confidence 7999988874321 34433 44445555 58776655443221 12222 223 332 22222333
Q ss_pred hHHHHHHHHHHHhCCCccccc
Q 019713 251 DENRAKCQLALKAGVFYDKVS 271 (337)
Q Consensus 251 Ds~R~~~~lA~~lgv~~~~V~ 271 (337)
.+.++-..+-+.+|+++++++
T Consensus 522 ~sl~l~~~~L~~lg~~~~~~~ 542 (621)
T PRK03562 522 GALKSGRLVLESLGLGPYEAR 542 (621)
T ss_pred HHHHHHHHHHHHcCCCHHHHH
Confidence 345666777777888876664
No 476
>PRK06523 short chain dehydrogenase; Provisional
Probab=90.06 E-value=0.49 Score=43.37 Aligned_cols=25 Identities=16% Similarity=0.155 Sum_probs=22.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
++|.|+||+|.||.+++..|+..|.
T Consensus 10 k~vlItGas~gIG~~ia~~l~~~G~ 34 (260)
T PRK06523 10 KRALVTGGTKGIGAATVARLLEAGA 34 (260)
T ss_pred CEEEEECCCCchhHHHHHHHHHCCC
Confidence 6899999999999999999998765
No 477
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=89.93 E-value=1 Score=36.26 Aligned_cols=21 Identities=24% Similarity=0.439 Sum_probs=17.9
Q ss_pred EEEEcCCCchHHHHHHHHHHcC
Q 019713 99 IAVSGAAGMIANHLLFKLAAGE 120 (337)
Q Consensus 99 I~IIGAaG~VG~~la~~L~~~~ 120 (337)
|.|+|. |.+|..++..|..++
T Consensus 1 vvI~G~-g~~~~~i~~~L~~~~ 21 (116)
T PF02254_consen 1 VVIIGY-GRIGREIAEQLKEGG 21 (116)
T ss_dssp EEEES--SHHHHHHHHHHHHTT
T ss_pred eEEEcC-CHHHHHHHHHHHhCC
Confidence 679995 999999999998855
No 478
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=89.91 E-value=1.4 Score=41.20 Aligned_cols=23 Identities=35% Similarity=0.366 Sum_probs=21.3
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCC
Q 019713 98 NIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 98 KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
||.|+|+ |.+|..++..|+..|+
T Consensus 1 kVlvvG~-GGlG~eilk~La~~Gv 23 (234)
T cd01484 1 KVLLVGA-GGIGCELLKNLALMGF 23 (234)
T ss_pred CEEEECC-CHHHHHHHHHHHHcCC
Confidence 6899995 9999999999999987
No 479
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=89.90 E-value=2.1 Score=39.82 Aligned_cols=100 Identities=12% Similarity=0.035 Sum_probs=54.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEe--cCcccccCC
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIG--INPYELFED 172 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~--t~~~eal~d 172 (337)
+.++|.|||| |.|+..=+..|...+- .|.+ +..+.+++ +.. +.+. .+++.. .-..+++.+
T Consensus 24 ~~~~VLVVGG-G~VA~RK~~~Ll~~gA-----~VtV--Vap~i~~e-l~~----l~~~-----~~i~~~~r~~~~~dl~g 85 (223)
T PRK05562 24 NKIKVLIIGG-GKAAFIKGKTFLKKGC-----YVYI--LSKKFSKE-FLD----LKKY-----GNLKLIKGNYDKEFIKD 85 (223)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCC-----EEEE--EcCCCCHH-HHH----HHhC-----CCEEEEeCCCChHHhCC
Confidence 3468999996 9999997888877653 2443 22232222 221 2211 123322 123467899
Q ss_pred CcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCC--chhHHH
Q 019713 173 AEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP--CNTNAL 230 (337)
Q Consensus 173 ADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNP--vd~~t~ 230 (337)
+++||.+-+.+ ..| +.+.+..++ .+.++.++.+| +|.+..
T Consensus 86 ~~LViaATdD~-----------~vN----~~I~~~a~~---~~~lvn~vd~p~~~dFi~P 127 (223)
T PRK05562 86 KHLIVIATDDE-----------KLN----NKIRKHCDR---LYKLYIDCSDYKKGLCIIP 127 (223)
T ss_pred CcEEEECCCCH-----------HHH----HHHHHHHHH---cCCeEEEcCCcccCeEEee
Confidence 99988864321 223 333333332 25567778888 444443
No 480
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=89.89 E-value=1.4 Score=40.54 Aligned_cols=25 Identities=12% Similarity=0.151 Sum_probs=22.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
+++.|+||+|.||.+++..|+..|.
T Consensus 9 k~~lItGas~gIG~aia~~l~~~G~ 33 (251)
T PRK12481 9 KVAIITGCNTGLGQGMAIGLAKAGA 33 (251)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCC
Confidence 5789999999999999999998876
No 481
>PRK07578 short chain dehydrogenase; Provisional
Probab=89.83 E-value=1.3 Score=38.93 Aligned_cols=23 Identities=30% Similarity=0.481 Sum_probs=20.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHHc
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAG 119 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~ 119 (337)
|+|.|+||+|.+|.+++..|+..
T Consensus 1 ~~vlItGas~giG~~la~~l~~~ 23 (199)
T PRK07578 1 MKILVIGASGTIGRAVVAELSKR 23 (199)
T ss_pred CeEEEEcCCcHHHHHHHHHHHhc
Confidence 47999999999999999999876
No 482
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=89.82 E-value=1.1 Score=43.18 Aligned_cols=23 Identities=39% Similarity=0.430 Sum_probs=21.4
Q ss_pred EEEEEcCCCchHHHHHHHHHHcCC
Q 019713 98 NIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 98 KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
||.|||| |.+|..++..|+..|+
T Consensus 1 kVlVVGa-GGlG~eilknLal~Gv 23 (291)
T cd01488 1 KILVIGA-GGLGCELLKNLALSGF 23 (291)
T ss_pred CEEEECC-CHHHHHHHHHHHHcCC
Confidence 6899995 9999999999999997
No 483
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=89.77 E-value=1.2 Score=46.48 Aligned_cols=62 Identities=18% Similarity=0.171 Sum_probs=38.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcEE
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWA 176 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADvV 176 (337)
++|+||| .|.||..+|..|..-|. .|. -+|.....+.. .++ . +... +..+.+++||+|
T Consensus 141 ktvgIiG-~G~IG~~vA~~l~~fG~-----~V~--~~d~~~~~~~~----~~~-----g----~~~~-~l~ell~~aDiV 198 (526)
T PRK13581 141 KTLGIIG-LGRIGSEVAKRAKAFGM-----KVI--AYDPYISPERA----AQL-----G----VELV-SLDELLARADFI 198 (526)
T ss_pred CEEEEEC-CCHHHHHHHHHHHhCCC-----EEE--EECCCCChhHH----Hhc-----C----CEEE-cHHHHHhhCCEE
Confidence 5899999 59999999999876543 232 33321111111 111 1 1222 456788999999
Q ss_pred EEec
Q 019713 177 LLIG 180 (337)
Q Consensus 177 Iita 180 (337)
++..
T Consensus 199 ~l~l 202 (526)
T PRK13581 199 TLHT 202 (526)
T ss_pred EEcc
Confidence 9875
No 484
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=89.77 E-value=1.2 Score=44.98 Aligned_cols=91 Identities=10% Similarity=0.101 Sum_probs=52.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCc
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAE 174 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dAD 174 (337)
.-.+|+|+|+ |.+|..++..+...|. .|.. +|.| +.++....+ +. . .+. +..++++++|
T Consensus 194 ~Gk~VvViG~-G~IG~~vA~~ak~~Ga-----~ViV--~d~d--p~r~~~A~~---~G---~----~v~-~leeal~~aD 252 (406)
T TIGR00936 194 AGKTVVVAGY-GWCGKGIAMRARGMGA-----RVIV--TEVD--PIRALEAAM---DG---F----RVM-TMEEAAKIGD 252 (406)
T ss_pred CcCEEEEECC-CHHHHHHHHHHhhCcC-----EEEE--EeCC--hhhHHHHHh---cC---C----EeC-CHHHHHhcCC
Confidence 4569999995 9999999998876554 2433 2333 333221111 11 1 111 2246789999
Q ss_pred EEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCC
Q 019713 175 WALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP 224 (337)
Q Consensus 175 vVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNP 224 (337)
+||.+.|. ..++.. +.+... ++++++++++-.
T Consensus 253 VVItaTG~---------------~~vI~~--~~~~~m-K~GailiN~G~~ 284 (406)
T TIGR00936 253 IFITATGN---------------KDVIRG--EHFENM-KDGAIVANIGHF 284 (406)
T ss_pred EEEECCCC---------------HHHHHH--HHHhcC-CCCcEEEEECCC
Confidence 99876432 233332 122232 578898888864
No 485
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=89.77 E-value=1.4 Score=40.77 Aligned_cols=25 Identities=24% Similarity=0.183 Sum_probs=21.9
Q ss_pred CEEEEEcC--CCchHHHHHHHHHHcCC
Q 019713 97 VNIAVSGA--AGMIANHLLFKLAAGEV 121 (337)
Q Consensus 97 ~KI~IIGA--aG~VG~~la~~L~~~~l 121 (337)
+++.|+|| ++-+|..++..|+..|.
T Consensus 8 k~~lItGa~~s~GIG~a~a~~la~~G~ 34 (256)
T PRK07889 8 KRILVTGVITDSSIAFHVARVAQEQGA 34 (256)
T ss_pred CEEEEeCCCCcchHHHHHHHHHHHCCC
Confidence 57899998 68999999999998775
No 486
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=89.65 E-value=1.3 Score=40.59 Aligned_cols=26 Identities=8% Similarity=-0.018 Sum_probs=23.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.+++.|+||+|.+|.+++..|+..|.
T Consensus 7 ~k~~lItGas~gIG~~~a~~l~~~G~ 32 (255)
T PRK06463 7 GKVALITGGTRGIGRAIAEAFLREGA 32 (255)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC
Confidence 36899999999999999999998775
No 487
>PRK06484 short chain dehydrogenase; Validated
Probab=89.60 E-value=0.99 Score=46.06 Aligned_cols=26 Identities=23% Similarity=0.193 Sum_probs=23.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.+++.|+||+|.||.+++..|+..|.
T Consensus 269 ~k~~lItGas~gIG~~~a~~l~~~G~ 294 (520)
T PRK06484 269 PRVVAITGGARGIGRAVADRFAAAGD 294 (520)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC
Confidence 46899999999999999999998875
No 488
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=89.54 E-value=6.5 Score=38.16 Aligned_cols=116 Identities=9% Similarity=0.013 Sum_probs=65.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhh--ccCCcccEEEe-------cCc
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDS--LFPLLREVKIG-------INP 166 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~--~~~~~~~v~i~-------t~~ 166 (337)
...|.|+||.+-+|..+|+.++..+- .+++ .|++ .+-.+.-+-.+.+. ...+-.+++-. ..-
T Consensus 38 g~~vLITGgg~GlGr~ialefa~rg~-----~~vl--~Din--~~~~~etv~~~~~~g~~~~y~cdis~~eei~~~a~~V 108 (300)
T KOG1201|consen 38 GEIVLITGGGSGLGRLIALEFAKRGA-----KLVL--WDIN--KQGNEETVKEIRKIGEAKAYTCDISDREEIYRLAKKV 108 (300)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHhCC-----eEEE--Eecc--ccchHHHHHHHHhcCceeEEEecCCCHHHHHHHHHHH
Confidence 45899999877799999999999885 2444 4443 22222222223321 00111111100 112
Q ss_pred ccccCCCcEEEEeccc-CCCCCC--chhh---hHHhh----HHHHHHHHHHHHhhcCCCeEEEEeC
Q 019713 167 YELFEDAEWALLIGAK-PRGPGM--ERAG---LLDIN----GQIFAEQGKALNAVASRNVKVIVVG 222 (337)
Q Consensus 167 ~eal~dADvVIitag~-prk~g~--~R~d---ll~~N----~~I~~~i~~~I~~~a~p~aivIvvt 222 (337)
.++..+.|++|..||. |-++.+ ++.+ .++.| ..+.+.+.+.+.+. +++-|+.++
T Consensus 109 k~e~G~V~ILVNNAGI~~~~~ll~~~d~ei~k~~~vN~~~~f~t~kaFLP~M~~~--~~GHIV~Ia 172 (300)
T KOG1201|consen 109 KKEVGDVDILVNNAGIVTGKKLLDCSDEEIQKTFDVNTIAHFWTTKAFLPKMLEN--NNGHIVTIA 172 (300)
T ss_pred HHhcCCceEEEeccccccCCCccCCCHHHHHHHHHHhhHHHHHHHHHHhHHHHhc--CCceEEEeh
Confidence 4667899999998884 444443 2222 23333 45678888998884 555555554
No 489
>PRK06398 aldose dehydrogenase; Validated
Probab=89.53 E-value=0.76 Score=42.42 Aligned_cols=25 Identities=16% Similarity=0.159 Sum_probs=22.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
++|.|+||+|.+|.+++..|+..|.
T Consensus 7 k~vlItGas~gIG~~ia~~l~~~G~ 31 (258)
T PRK06398 7 KVAIVTGGSQGIGKAVVNRLKEEGS 31 (258)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCC
Confidence 5899999999999999999998775
No 490
>PRK05854 short chain dehydrogenase; Provisional
Probab=89.51 E-value=6.5 Score=37.61 Aligned_cols=46 Identities=22% Similarity=0.178 Sum_probs=32.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHh
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELE 150 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~ 150 (337)
.+++.|+||+|.||.+++..|+..|. .|.+. .++.++++....++.
T Consensus 14 gk~~lITGas~GIG~~~a~~La~~G~-----~Vil~----~R~~~~~~~~~~~l~ 59 (313)
T PRK05854 14 GKRAVVTGASDGLGLGLARRLAAAGA-----EVILP----VRNRAKGEAAVAAIR 59 (313)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC-----EEEEE----eCCHHHHHHHHHHHH
Confidence 35899999999999999999998774 25442 345555554444443
No 491
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=89.43 E-value=0.78 Score=42.30 Aligned_cols=26 Identities=31% Similarity=0.280 Sum_probs=22.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
+.++|+|.| .|+||++++..|...|.
T Consensus 22 ~g~~vaIqG-fGnVG~~~a~~L~~~G~ 47 (217)
T cd05211 22 EGLTVAVQG-LGNVGWGLAKKLAEEGG 47 (217)
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHHcCC
Confidence 347999999 69999999999998764
No 492
>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]
Probab=89.38 E-value=5.6 Score=38.08 Aligned_cols=103 Identities=22% Similarity=0.300 Sum_probs=60.5
Q ss_pred CCEEEEEcCCCch--------------------HHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhH-HHhHhhhcc
Q 019713 96 MVNIAVSGAAGMI--------------------ANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGV-AMELEDSLF 154 (337)
Q Consensus 96 ~~KI~IIGAaG~V--------------------G~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~-a~DL~d~~~ 154 (337)
++||+|-|| |+- |+++|...+..|. .++|. |.+.+-.+-. .--++|+
T Consensus 1 ~mkv~vyga-gnq~ly~~~l~~pek~ggE~PyGGa~mAiefAeAGH-----DVVLa----ePn~d~~dd~~w~~vedA-- 68 (340)
T COG4007 1 MMKVAVYGA-GNQRLYLEQLNLPEKYGGEPPYGGARMAIEFAEAGH-----DVVLA----EPNRDIMDDEHWKRVEDA-- 68 (340)
T ss_pred CceEEEEcC-CccchhHHhcCChhhhCCCCCCCchHHHHHHHHcCC-----cEEee----cCCccccCHHHHHHHHhc--
Confidence 478888885 752 6677777777664 26653 4443332211 1113332
Q ss_pred CCcccEEEecCcccccCCCcEEEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCCCchhHHHHH
Q 019713 155 PLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALIC 232 (337)
Q Consensus 155 ~~~~~v~i~t~~~eal~dADvVIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtNPvd~~t~i~ 232 (337)
.+++++||.++.+.+.+.|+.- | .| +....|.++|...+. .++ |+.|.|.+-...+
T Consensus 69 ----GV~vv~dD~eaa~~~Ei~VLFT--P--FG-------k~T~~Iarei~~hvp----EgA---VicnTCT~sp~vL 124 (340)
T COG4007 69 ----GVEVVSDDAEAAEHGEIHVLFT--P--FG-------KATFGIAREILEHVP----EGA---VICNTCTVSPVVL 124 (340)
T ss_pred ----CcEEecCchhhhhcceEEEEec--c--cc-------hhhHHHHHHHHhhCc----CCc---EecccccCchhHH
Confidence 4788899999999999987642 1 11 234566666666443 345 4677775544333
No 493
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=89.37 E-value=3.7 Score=41.18 Aligned_cols=24 Identities=25% Similarity=0.382 Sum_probs=21.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
|||.|+|+ |.+|.+++..|...+.
T Consensus 1 m~viIiG~-G~ig~~~a~~L~~~g~ 24 (453)
T PRK09496 1 MKIIIVGA-GQVGYTLAENLSGENN 24 (453)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCC
Confidence 58999996 9999999999987664
No 494
>PRK09730 putative NAD(P)-binding oxidoreductase; Provisional
Probab=89.33 E-value=4.4 Score=36.39 Aligned_cols=25 Identities=20% Similarity=0.119 Sum_probs=22.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
..|.|+||+|.+|.+++..|+..+.
T Consensus 2 ~~~lItGa~g~iG~~l~~~l~~~g~ 26 (247)
T PRK09730 2 AIALVTGGSRGIGRATALLLAQEGY 26 (247)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCC
Confidence 4689999999999999999998764
No 495
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=89.32 E-value=1.6 Score=42.71 Aligned_cols=92 Identities=18% Similarity=0.233 Sum_probs=51.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCCCCCCCceEEEeccccchhhHHHhHHHhHhhhccCCcccEEEecCcccccCCCcE
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEW 175 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l~~e~~~v~L~L~d~d~~~~~l~g~a~DL~d~~~~~~~~v~i~t~~~eal~dADv 175 (337)
-++++||| .|.||..+|..+. + |+- .|. -++..++++. +.. + ..... +..+.++.||+
T Consensus 146 gktvGIiG-~GrIG~avA~r~~--~-Fgm--~v~--y~~~~~~~~~-~~~---~---------~~~y~-~l~ell~~sDi 203 (324)
T COG1052 146 GKTLGIIG-LGRIGQAVARRLK--G-FGM--KVL--YYDRSPNPEA-EKE---L---------GARYV-DLDELLAESDI 203 (324)
T ss_pred CCEEEEEC-CCHHHHHHHHHHh--c-CCC--EEE--EECCCCChHH-Hhh---c---------Cceec-cHHHHHHhCCE
Confidence 46999999 6999999999876 2 331 233 2333222111 100 0 01222 26688999999
Q ss_pred EEEecccCCCCCCchhhhHHhhHHHHHHHHHHHHhhcCCCeEEEEeCC
Q 019713 176 ALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN 223 (337)
Q Consensus 176 VIitag~prk~g~~R~dll~~N~~I~~~i~~~I~~~a~p~aivIvvtN 223 (337)
|++.... .+ ++|. + .|. +.+++. ++++++|+++=
T Consensus 204 i~l~~Pl--t~-~T~h-L--in~-------~~l~~m-k~ga~lVNtaR 237 (324)
T COG1052 204 ISLHCPL--TP-ETRH-L--INA-------EELAKM-KPGAILVNTAR 237 (324)
T ss_pred EEEeCCC--Ch-HHhh-h--cCH-------HHHHhC-CCCeEEEECCC
Confidence 9987521 11 1111 1 121 234443 68888888873
No 496
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=89.32 E-value=3.1 Score=43.31 Aligned_cols=26 Identities=15% Similarity=0.077 Sum_probs=21.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 95 KMVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 95 ~~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
+..||.|+|| |.+|...+..+...|.
T Consensus 164 pg~kVlViGa-G~iGL~Ai~~Ak~lGA 189 (509)
T PRK09424 164 PPAKVLVIGA-GVAGLAAIGAAGSLGA 189 (509)
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHCCC
Confidence 4679999995 9999998887776664
No 497
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=89.26 E-value=2.1 Score=40.93 Aligned_cols=25 Identities=24% Similarity=0.243 Sum_probs=22.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
..+|+|+|+ |.||+.++..|+..|+
T Consensus 30 ~s~VlVvG~-GGVGs~vae~Lar~GV 54 (268)
T PRK15116 30 DAHICVVGI-GGVGSWAAEALARTGI 54 (268)
T ss_pred CCCEEEECc-CHHHHHHHHHHHHcCC
Confidence 469999995 9999999999999997
No 498
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=89.22 E-value=7.8 Score=35.08 Aligned_cols=25 Identities=24% Similarity=0.103 Sum_probs=22.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 97 VNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 97 ~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
++|.|+||+|.+|.+++..|+..+.
T Consensus 3 k~vlItG~sg~iG~~la~~L~~~g~ 27 (256)
T PRK12745 3 PVALVTGGRRGIGLGIARALAAAGF 27 (256)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCC
Confidence 4689999999999999999998774
No 499
>PRK06841 short chain dehydrogenase; Provisional
Probab=89.20 E-value=1.9 Score=39.29 Aligned_cols=26 Identities=23% Similarity=0.114 Sum_probs=23.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
.++|.|+||+|.+|.+++..|+..|.
T Consensus 15 ~k~vlItGas~~IG~~la~~l~~~G~ 40 (255)
T PRK06841 15 GKVAVVTGGASGIGHAIAELFAAKGA 40 (255)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC
Confidence 35899999999999999999998775
No 500
>PRK14852 hypothetical protein; Provisional
Probab=89.18 E-value=1.2 Score=49.57 Aligned_cols=25 Identities=24% Similarity=0.380 Sum_probs=23.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHcCC
Q 019713 96 MVNIAVSGAAGMIANHLLFKLAAGEV 121 (337)
Q Consensus 96 ~~KI~IIGAaG~VG~~la~~L~~~~l 121 (337)
..||+|||+ |-+|+.++..|+..|+
T Consensus 332 ~srVlVvGl-GGlGs~ia~~LAraGV 356 (989)
T PRK14852 332 RSRVAIAGL-GGVGGIHLMTLARTGI 356 (989)
T ss_pred cCcEEEECC-cHHHHHHHHHHHHcCC
Confidence 369999995 9999999999999998
Done!