BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 019716
         (337 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3PT9|A Chain A, Crystal Structure Of Mouse Dnmt1(731-1602) In The Free
           State
 pdb|4DA4|A Chain A, Structure Of Mouse Dnmt1 (731-1602) Bound To
           Hemimethylated Cpg Dna
 pdb|4DA4|B Chain B, Structure Of Mouse Dnmt1 (731-1602) Bound To
           Hemimethylated Cpg Dna
          Length = 873

 Score = 30.0 bits (66), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 13/28 (46%), Positives = 16/28 (57%)

Query: 156 TVQAGEDVLAKIMSFSQNGPRAVCILSA 183
           TV+ GED+L  I  +SQ GP     L A
Sbjct: 335 TVEYGEDLLESIQDYSQGGPDRFYFLEA 362


>pdb|3AV4|A Chain A, Crystal Structure Of Mouse Dna Methyltransferase 1
 pdb|3AV5|A Chain A, Crystal Structure Of Mouse Dna Methyltransferase 1 With
           Adohcy
 pdb|3AV6|A Chain A, Crystal Structure Of Mouse Dna Methyltransferase 1 With
           Adomet
          Length = 1330

 Score = 30.0 bits (66), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 13/28 (46%), Positives = 16/28 (57%)

Query: 156 TVQAGEDVLAKIMSFSQNGPRAVCILSA 183
           TV+ GED+L  I  +SQ GP     L A
Sbjct: 774 TVEYGEDLLESIQDYSQGGPDRFYFLEA 801


>pdb|3PT6|A Chain A, Crystal Structure Of Mouse Dnmt1(650-1602) In Complex With
           Dna
 pdb|3PT6|B Chain B, Crystal Structure Of Mouse Dnmt1(650-1602) In Complex With
           Dna
          Length = 954

 Score = 29.6 bits (65), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 13/29 (44%), Positives = 16/29 (55%)

Query: 155 ITVQAGEDVLAKIMSFSQNGPRAVCILSA 183
            TV+ GED+L  I  +SQ GP     L A
Sbjct: 415 CTVEYGEDLLESIQDYSQGGPDRFYFLEA 443


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.313    0.129    0.378 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,805,504
Number of Sequences: 62578
Number of extensions: 182040
Number of successful extensions: 253
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 250
Number of HSP's gapped (non-prelim): 3
length of query: 337
length of database: 14,973,337
effective HSP length: 99
effective length of query: 238
effective length of database: 8,778,115
effective search space: 2089191370
effective search space used: 2089191370
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 52 (24.6 bits)