BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 019716
         (337 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9S7C9|ESCA_ARATH Putative DNA-binding protein ESCAROLA OS=Arabidopsis thaliana
           GN=ESC PE=2 SV=1
          Length = 311

 Score = 67.4 bits (163), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 61/159 (38%), Positives = 87/159 (54%), Gaps = 14/159 (8%)

Query: 118 SSSSNSYKKARGRPPGSTTRKHTAAFGSAGV--GFTPHVITVQAGEDVLAKIMSFSQNGP 175
           +SSS   K+ RGRPPGS  +       +         HV+ V  G D++  + ++++   
Sbjct: 79  TSSSAPGKRPRGRPPGSKNKAKPPIIVTRDSPNALRSHVLEVSPGADIVESVSTYARRRG 138

Query: 176 RAVCILSANGAISNVTLRQAMT---------SGGTVTYEGRFEILSLSGSILLSESGGQR 226
           R V +L  NG +SNVTLRQ +T          GG VT  GRFEILSL+G++L   +    
Sbjct: 139 RGVSVLGGNGTVSNVTLRQPVTPGNGGGVSGGGGVVTLHGRFEILSLTGTVLPPPA---P 195

Query: 227 SRTGGLSVSLAGPDGRVLGGGVAGLLTAASPVQVIIGSF 265
              GGLS+ LAG  G+V+GG V   L A++PV ++  SF
Sbjct: 196 PGAGGLSIFLAGGQGQVVGGSVVAPLIASAPVILMAASF 234


>sp|Q2JII9|GLMU_SYNJB Bifunctional protein GlmU OS=Synechococcus sp. (strain
           JA-2-3B'a(2-13)) GN=glmU PE=3 SV=1
          Length = 632

 Score = 36.6 bits (83), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 40/133 (30%), Positives = 63/133 (47%), Gaps = 17/133 (12%)

Query: 160 GEDVLAKIMSFSQNGP-RAVCILSANGAISNVTLRQAMTSGGTVTYEGRFEILSLSGSIL 218
           G+D+  ++   ++  P +A  +LSA G++S  TLR A  +G  +  E R EIL+LSGS  
Sbjct: 480 GQDLKQELERLARQQPLQAGFVLSAVGSLSQATLRLADQTGDHLLSE-RLEILALSGS-- 536

Query: 219 LSESGGQRSRTGGLSVSLAGPDGRVLGGGVA-GLLTAASPVQVIIGSFLAEGWKESRSGM 277
           L   G        L +++A   G+  GG +  G L   +   V+  S       E R   
Sbjct: 537 LCPDGVH------LHLTVADARGQTWGGHLRPGCLIYTTAEIVLADS------PEYRFSR 584

Query: 278 QPEPLSSSMPKFI 290
           QP+P +  +   I
Sbjct: 585 QPDPATGYLELHI 597


>sp|Q5F3V3|PDS5A_CHICK Sister chromatid cohesion protein PDS5 homolog A OS=Gallus gallus
            GN=PDS5A PE=2 SV=2
          Length = 1330

 Score = 35.0 bits (79), Expect = 0.91,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 36/90 (40%), Gaps = 12/90 (13%)

Query: 56   HQQQERGNQQHQVSSVSVSGLVEPAKRKRGRPRKYAPDGSNGSNMSVNLASPPPSAAAVA 115
            HQ+ E  N      S++       AK +RGRP K  P G+   N   N   PP      A
Sbjct: 1242 HQKAEENNADETGPSLA-------AKTRRGRPPKPEPQGTTAKNEETN--KPPVRGRKRA 1292

Query: 116  AVSSSS-NSYKKARGRPPGS--TTRKHTAA 142
            A S  S  S +    + P    T +K  AA
Sbjct: 1293 AASQESPGSLEAGNAKAPKQQDTAKKPAAA 1322


>sp|P75387|Y396_MYCPN Uncharacterized protein MG277 homolog OS=Mycoplasma pneumoniae
           (strain ATCC 29342 / M129) GN=MPN_396 PE=4 SV=2
          Length = 971

 Score = 33.5 bits (75), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 30/109 (27%), Positives = 41/109 (37%), Gaps = 7/109 (6%)

Query: 234 VSLAGPDGRVLGGG-----VAGLLTAASPVQVIIGSFLAEGWKESRSGMQPEPLSSSMPK 288
           +SL   DG VL        +   LTA  P      S L   +K S++ +  E L +    
Sbjct: 183 LSLETTDGIVLFDSFDKEFIRNSLTAVVPQTTNTNSALTFEYKLSKNVITKESLHNDFLD 242

Query: 289 FIPGASAVGSPPSRGNLSESSGGPGSPLNHSTGGGCSNSNPPSIPNMWK 337
           FI   S   S  + GN  +S  G G        G   N N   +  +WK
Sbjct: 243 FIKSKSLTDSDYNTGNGQKSVEGSGKWFKDKANGSAQNGNKTLV--LWK 289


>sp|O84735|RIBD_CHLTR Riboflavin biosynthesis protein RibD OS=Chlamydia trachomatis
           (strain D/UW-3/Cx) GN=ribD PE=3 SV=1
          Length = 375

 Score = 32.3 bits (72), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 6/54 (11%)

Query: 226 RSRTGGLSVSLAGPDGRVLGGGVAGLLTAASPVQVIIGSFLAEGWKESRSGMQP 279
           +S+   + V L  PD RV   GVA L  A  PV V +GS      +E+++ +QP
Sbjct: 95  KSKVAAVYVGLLDPDPRVCKKGVARLQAAGIPVYVGVGS------QEAKTSLQP 142


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.309    0.127    0.365 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 139,145,303
Number of Sequences: 539616
Number of extensions: 6281894
Number of successful extensions: 27844
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 200
Number of HSP's that attempted gapping in prelim test: 27174
Number of HSP's gapped (non-prelim): 722
length of query: 337
length of database: 191,569,459
effective HSP length: 118
effective length of query: 219
effective length of database: 127,894,771
effective search space: 28008954849
effective search space used: 28008954849
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 61 (28.1 bits)