Query 019716
Match_columns 337
No_of_seqs 250 out of 607
Neff 4.2
Searched_HMMs 46136
Date Fri Mar 29 03:58:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019716.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019716hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03479 DUF296: Domain of unk 100.0 9.8E-29 2.1E-33 207.5 11.6 117 150-271 1-119 (120)
2 COG1661 Predicted DNA-binding 99.9 3E-24 6.4E-29 187.4 14.0 118 149-273 8-128 (141)
3 PF02178 AT_hook: AT hook moti 96.2 0.0016 3.4E-08 36.3 0.6 12 81-92 1-12 (13)
4 smart00384 AT_hook DNA binding 96.2 0.0025 5.3E-08 41.7 1.3 15 81-95 1-15 (26)
5 PF14621 RFX5_DNA_bdg: RFX5 DN 84.5 0.35 7.5E-06 45.1 0.4 13 79-91 66-78 (219)
6 COG1710 Uncharacterized protei 68.9 2.2 4.7E-05 37.6 0.9 17 77-93 80-97 (139)
7 PF13546 DDE_5: DDE superfamil 68.1 2.8 6E-05 39.2 1.4 15 79-93 229-243 (273)
8 PF03306 AAL_decarboxy: Alpha- 52.0 76 0.0016 30.1 8.0 106 155-266 84-200 (220)
9 COG1777 Predicted transcriptio 49.3 6.8 0.00015 37.3 0.6 15 79-93 62-76 (217)
10 TIGR01252 acetolac_decarb alph 29.6 3.2E+02 0.007 26.2 8.4 89 174-267 104-203 (232)
11 KOG4565 E93 protein involved i 26.8 21 0.00046 33.4 -0.0 16 78-93 110-125 (206)
12 PF13737 DDE_Tnp_1_5: Transpos 26.2 33 0.00071 29.5 1.0 15 78-92 21-35 (112)
13 PF14869 DUF4488: Domain of un 25.7 86 0.0019 28.0 3.5 35 177-213 28-62 (133)
14 TIGR03836 termin_org_HMW1 cyta 23.1 58 0.0013 26.5 1.8 17 12-28 31-47 (82)
15 PF15333 TAF1D: TATA box-bindi 22.5 38 0.00081 32.4 0.8 13 83-95 64-76 (217)
16 cd04618 CBS_pair_5 The CBS dom 21.9 1.7E+02 0.0037 22.7 4.3 34 154-187 52-86 (98)
17 PF11906 DUF3426: Protein of u 21.7 1.9E+02 0.0041 24.6 4.9 42 206-249 65-106 (149)
18 cd04603 CBS_pair_KefB_assoc Th 20.8 1.5E+02 0.0032 23.0 3.7 37 149-185 61-97 (111)
No 1
>PF03479 DUF296: Domain of unknown function (DUF296); InterPro: IPR005175 This putative conserved domain is found in proteins that contain AT-hook motifs IPR000637 from INTERPRO, suggesting a DNA-binding function for the proteins as a whole, however, the function of this domain is unknown. Overexpression of a protein containing this domain, Q9S7C9 from SWISSPROT, in Arabidopsis thaliana causes late flowering and modified leaf development []. ; PDB: 2DT4_A 2P6Y_A 3HWU_A 3HTN_A 2NMU_A 2H6L_A 2HX0_A.
Probab=99.96 E-value=9.8e-29 Score=207.55 Aligned_cols=117 Identities=32% Similarity=0.445 Sum_probs=103.3
Q ss_pred ceeEEEEecCCccHHHHHHHHHHhCCccEEEEEeeceeeeEEEeeccC--CCCeeeeecceEEEEeeeeeeecCCCCCCC
Q 019716 150 FTPHVITVQAGEDVLAKIMSFSQNGPRAVCILSANGAISNVTLRQAMT--SGGTVTYEGRFEILSLSGSILLSESGGQRS 227 (337)
Q Consensus 150 frphVIrV~~GEDVvekI~~Faq~~~raicILSAiGAVSnVTLrq~~~--sg~~~t~eG~fEILSLsGsi~~~e~G~~~s 227 (337)
||+|++||++||||+++|++||+++.+..|+|+++|+|++|+|++++. .+..++|+|+|||+||+|||.. .++.
T Consensus 1 ~r~~~~rl~~Gedl~~~l~~~~~~~~i~~~~is~iGsl~~~~l~~~~~~~~~~~~~~~g~~Ei~sl~G~i~~-~~g~--- 76 (120)
T PF03479_consen 1 GRVFVIRLDPGEDLLESLEAFAREHGIRSGVISGIGSLSNVTLGYYDPPSYYEPLEFEGPFEIISLSGTISP-EDGK--- 76 (120)
T ss_dssp EEEEEEEEETTSBHHHHHHHHHHHHT-SSEEEEEEEEEEEEEEEEEETTTEEEEEEEESEEEEEEEEEEEEE-ETTE---
T ss_pred CcEEEEEECCCCHHHHHHHHHHHHCCCcEEEEEEEeEEeEEEEEEecccCCcceEEecccEEEEEeEEEEEC-CCCC---
Confidence 789999999999999999999999888889999999999999999953 4568899999999999999997 4343
Q ss_pred CCceeEEEEeCCCCcEEeeecCCccEEecceEEEEEeecccccc
Q 019716 228 RTGGLSVSLAGPDGRVLGGGVAGLLTAASPVQVIIGSFLAEGWK 271 (337)
Q Consensus 228 ~~~hLHVSLAg~dGqViGGHLag~LIAastVEVVV~sF~~~~~k 271 (337)
++.|||++|++.||+|+||||..+.+ ..++||+|..+....++
T Consensus 77 ~~~HlHisl~~~~g~v~gGHl~~g~v-~~t~Ev~i~~~~~~~~~ 119 (120)
T PF03479_consen 77 PFVHLHISLADPDGQVFGGHLLEGTV-FATAEVVITELSGINFT 119 (120)
T ss_dssp EEEEEEEEEE-TTSEEEEEEEEEEEE-EEEEEEEEEEETTEEEE
T ss_pred CcceEEEEEECCCCeEEeeEeCCCEE-eEEEEEEEEEecCcccc
Confidence 78999999999999999999997665 78999999999877655
No 2
>COG1661 Predicted DNA-binding protein with PD1-like DNA-binding motif [General function prediction only]
Probab=99.92 E-value=3e-24 Score=187.41 Aligned_cols=118 Identities=22% Similarity=0.316 Sum_probs=106.9
Q ss_pred CceeEEEEecCCccHHHHHHHHHHhCCccEEEEEeeceeeeEEEeeccCC---CCeeeeecceEEEEeeeeeeecCCCCC
Q 019716 149 GFTPHVITVQAGEDVLAKIMSFSQNGPRAVCILSANGAISNVTLRQAMTS---GGTVTYEGRFEILSLSGSILLSESGGQ 225 (337)
Q Consensus 149 ~frphVIrV~~GEDVvekI~~Faq~~~raicILSAiGAVSnVTLrq~~~s---g~~~t~eG~fEILSLsGsi~~~e~G~~ 225 (337)
.-+.+++||++|||+++.|.+||+++.+..++++|+|++++++|++++.+ |.++++.|+||||||.|||..++
T Consensus 8 ~gr~~~~Rld~G~d~~~~l~~~a~~~~i~aa~v~~iGal~~~~l~~~~~~~~~y~~~~~~e~~EvlSL~G~i~~~~---- 83 (141)
T COG1661 8 SGRVIALRLDPGEDLFSELEAFAEQEDIHAAVVTAIGALRDAKLRYFDPEEKEYETIPVNEPLEVLSLLGNIALDD---- 83 (141)
T ss_pred cceEEEEEeCCCccHHHHHHHHHHhcCceEEEEEEeeeeeeeEEEEecCCCCceEEEecCCcEEEEEecceeecCC----
Confidence 44789999999999999999999999999999999999999999999964 56889999999999999997655
Q ss_pred CCCCceeEEEEeCCCCcEEeeecCCccEEecceEEEEEeecccccccc
Q 019716 226 RSRTGGLSVSLAGPDGRVLGGGVAGLLTAASPVQVIIGSFLAEGWKES 273 (337)
Q Consensus 226 ~s~~~hLHVSLAg~dGqViGGHLag~LIAastVEVVV~sF~~~~~k~~ 273 (337)
++.|||++|++++|+++||||.++++. .++||+|.++....+.+.
T Consensus 84 --p~~HlHa~l~~~~G~~~GGHL~~~~V~-~t~Ev~I~el~~~~~~R~ 128 (141)
T COG1661 84 --PFVHLHAALGDENGITLGGHLLEGEVF-PTAEVFIRELPGELFRRE 128 (141)
T ss_pred --CcEEEEEEEecCCCcEEeeeecccEEe-EEEEEEEEEccccceeEe
Confidence 699999999999999999999998754 599999999998865543
No 3
>PF02178 AT_hook: AT hook motif; InterPro: IPR017956 AT hooks are DNA-binding motifs with a preference for A/T rich regions. These motifs are found in a variety of proteins, including the high mobility group (HMG) proteins [], in DNA-binding proteins from plants [] and in hBRG1 protein, a central ATPase of the human switching/sucrose non-fermenting (SWI/SNF) remodeling complex []. High mobility group (HMG) proteins are a family of relatively low molecular weight non-histone components in chromatin []. HMG-I and HMG-Y (HMGA) are proteins of about 100 amino acid residues which are produced by the alternative splicing of a single gene. HMG-I/Y proteins bind preferentially to the minor groove of AT-rich regions in double-stranded DNA in a non-sequence specific manner [, ]. It is suggested that these proteins could function in nucleosome phasing and in the 3' end processing of mRNA transcripts. They are also involved in the transcription regulation of genes containing, or in close proximity to, AT-rich regions. ; GO: 0003677 DNA binding; PDB: 2EZE_A 2EZD_A 2EZF_A 2EZG_A.
Probab=96.24 E-value=0.0016 Score=36.35 Aligned_cols=12 Identities=83% Similarity=1.193 Sum_probs=4.6
Q ss_pred cccCCCCCCCCC
Q 019716 81 KRKRGRPRKYAP 92 (337)
Q Consensus 81 kkKRGRPRKy~~ 92 (337)
+|+||||||+..
T Consensus 1 ~r~RGRP~k~~~ 12 (13)
T PF02178_consen 1 KRKRGRPRKNAK 12 (13)
T ss_dssp S--SS--TT---
T ss_pred CCcCCCCccccC
Confidence 689999999864
No 4
>smart00384 AT_hook DNA binding domain with preference for A/T rich regions. Small DNA-binding motif first described in the high mobility group non-histone chromosomal protein HMG-I(Y).
Probab=96.19 E-value=0.0025 Score=41.70 Aligned_cols=15 Identities=67% Similarity=0.990 Sum_probs=13.1
Q ss_pred cccCCCCCCCCCCCC
Q 019716 81 KRKRGRPRKYAPDGS 95 (337)
Q Consensus 81 kkKRGRPRKy~~dg~ 95 (337)
|||||||||+..+..
T Consensus 1 kRkRGRPrK~~~~~~ 15 (26)
T smart00384 1 KRKRGRPRKAPKDXX 15 (26)
T ss_pred CCCCCCCCCCCCccc
Confidence 699999999998754
No 5
>PF14621 RFX5_DNA_bdg: RFX5 DNA-binding domain
Probab=84.48 E-value=0.35 Score=45.08 Aligned_cols=13 Identities=77% Similarity=1.109 Sum_probs=11.0
Q ss_pred cccccCCCCCCCC
Q 019716 79 PAKRKRGRPRKYA 91 (337)
Q Consensus 79 ~~kkKRGRPRKy~ 91 (337)
..|||||||||-.
T Consensus 66 dAKRKRGRPRKKs 78 (219)
T PF14621_consen 66 DAKRKRGRPRKKS 78 (219)
T ss_pred hhhhhcCCCccCC
Confidence 5799999999654
No 6
>COG1710 Uncharacterized protein conserved in archaea [Function unknown]
Probab=68.94 E-value=2.2 Score=37.65 Aligned_cols=17 Identities=59% Similarity=1.048 Sum_probs=14.1
Q ss_pred CCccc-ccCCCCCCCCCC
Q 019716 77 VEPAK-RKRGRPRKYAPD 93 (337)
Q Consensus 77 ~~~~k-kKRGRPRKy~~d 93 (337)
..|+| |-|||||||.-.
T Consensus 80 vIPvk~KgrGrprkyd~~ 97 (139)
T COG1710 80 VIPVKLKGRGRPRKYDRN 97 (139)
T ss_pred EeeeeecCCCCCcccchh
Confidence 46788 889999999863
No 7
>PF13546 DDE_5: DDE superfamily endonuclease
Probab=68.05 E-value=2.8 Score=39.24 Aligned_cols=15 Identities=60% Similarity=1.070 Sum_probs=11.4
Q ss_pred cccccCCCCCCCCCC
Q 019716 79 PAKRKRGRPRKYAPD 93 (337)
Q Consensus 79 ~~kkKRGRPRKy~~d 93 (337)
...+||||||||+.-
T Consensus 229 ~~~~~rGRPr~~g~~ 243 (273)
T PF13546_consen 229 PPPPKRGRPRKYGRR 243 (273)
T ss_pred ccCCCCCCCCCCCCc
Confidence 445569999999954
No 8
>PF03306 AAL_decarboxy: Alpha-acetolactate decarboxylase; InterPro: IPR005128 Alpha-acetolactate decarboxylase plays a dual role in the cell: (i) it catalyzes the second step of the acetoin pathway, (S)-2-hydroxy-2-methyl-3-oxobutanoate = (R)-2-acetoin + CO2 and thus potentially the internal pH of cells and (ii) it controls the pool of alpha-acetolactate during leucine and valine synthesis.; GO: 0047605 acetolactate decarboxylase activity, 0019751 polyol metabolic process, 0005789 endoplasmic reticulum membrane; PDB: 1XV2_B.
Probab=52.03 E-value=76 Score=30.10 Aligned_cols=106 Identities=19% Similarity=0.255 Sum_probs=53.5
Q ss_pred EEecCCccHHHHHHHHHHhCCccEEEEEeeceeeeEEEeeccCC---CC----eeeeecceEEEEeeeeee----ecCCC
Q 019716 155 ITVQAGEDVLAKIMSFSQNGPRAVCILSANGAISNVTLRQAMTS---GG----TVTYEGRFEILSLSGSIL----LSESG 223 (337)
Q Consensus 155 IrV~~GEDVvekI~~Faq~~~raicILSAiGAVSnVTLrq~~~s---g~----~~t~eG~fEILSLsGsi~----~~e~G 223 (337)
...-.-++|-+.|.+... .......+-.-|..+.|++|-.... +. .+.-+-.||.=-+.|++. +.--+
T Consensus 84 ~~~~~~~~l~~~l~~~~~-~~N~f~airi~G~F~~v~~Rsv~~qe~Py~~l~e~~~~Q~~f~~~ni~GTlVGf~sP~~~~ 162 (220)
T PF03306_consen 84 DSPMSKEELEAKLDELLP-SKNLFYAIRIDGTFSSVKTRSVPKQEKPYPPLAEVAKNQPEFTFENIEGTLVGFYSPEYMG 162 (220)
T ss_dssp EEEEEHHHHHHHHHHHSS--TTS-EEEEEEEEEEEEEEE------SS---THHHHTT--EEEEEEEEEEEEEEEE-GGGB
T ss_pred CCCCCHHHHHHHHHHhcC-CCceEEEEEEEEEECeEEEEeccCccCCCCChhHHhccCceEEecCcEEEEEEEEcchhcc
Confidence 344455677777777765 3345777788999999999965432 11 111123466666666654 32212
Q ss_pred CCCCCCceeEEEEeCCCCcEEeeecCCccEEecceEEEEEeec
Q 019716 224 GQRSRTGGLSVSLAGPDGRVLGGGVAGLLTAASPVQVIIGSFL 266 (337)
Q Consensus 224 ~~~s~~~hLHVSLAg~dGqViGGHLag~LIAastVEVVV~sF~ 266 (337)
+- -..++|+-+-+ |-+.+||||.+-.+ ..++|-+..+.
T Consensus 163 gi--~v~G~HlHFls-~Dr~~GGHvld~~~--~~~~v~~~~~~ 200 (220)
T PF03306_consen 163 GI--NVPGFHLHFLS-DDRTFGGHVLDFEL--DNGTVEIDVFD 200 (220)
T ss_dssp TT--B-CEEEEEEEE-TTSS-EEEEEEEEE--EEEEEEEEE-S
T ss_pred cc--CCceEEEEEec-CCCCCCCCeEEEEe--ceEEEEEEecC
Confidence 21 12334444443 34678999998544 44445444443
No 9
>COG1777 Predicted transcriptional regulators [Transcription]
Probab=49.26 E-value=6.8 Score=37.33 Aligned_cols=15 Identities=53% Similarity=0.634 Sum_probs=12.1
Q ss_pred cccccCCCCCCCCCC
Q 019716 79 PAKRKRGRPRKYAPD 93 (337)
Q Consensus 79 ~~kkKRGRPRKy~~d 93 (337)
-.|.+|||||||.--
T Consensus 62 ie~~~Rg~~rKYY~I 76 (217)
T COG1777 62 IEKIPRGRPRKYYMI 76 (217)
T ss_pred ccccccCCCcceeec
Confidence 357888999999854
No 10
>TIGR01252 acetolac_decarb alpha-acetolactate decarboxylase. Puruvate can be fermented to 2,3-butanediol. It is first converted to alpha-acetolactate by alpha-acetolactate synthase, then decarboxylated to acetoin by this enzyme. Acetoin can be reduced in some species to 2,3-butanediol by acetoin reductase.
Probab=29.57 E-value=3.2e+02 Score=26.24 Aligned_cols=89 Identities=18% Similarity=0.301 Sum_probs=51.0
Q ss_pred CCccEEEEEeeceeeeEEEeeccCC---CCe----eeeecceEEEEeeeeee----ecCCCCCCCCCceeEEEEeCCCCc
Q 019716 174 GPRAVCILSANGAISNVTLRQAMTS---GGT----VTYEGRFEILSLSGSIL----LSESGGQRSRTGGLSVSLAGPDGR 242 (337)
Q Consensus 174 ~~raicILSAiGAVSnVTLrq~~~s---g~~----~t~eG~fEILSLsGsi~----~~e~G~~~s~~~hLHVSLAg~dGq 242 (337)
.....+-+-.-|..++|+.|-.... |.. ..=+-.||+-.+.|++. +.--.+. --.++|+-+-+ |-+
T Consensus 104 ~~N~f~Airi~G~F~~v~~Rsvp~Q~kPy~~l~e~~~~Q~~f~~~nv~GTlvGF~sP~~~~gi--~v~G~HlHFis-dDr 180 (232)
T TIGR01252 104 GKNVFYAIRITGEFPKVQTRTVPKQEKPYPPFVEVVKGQPEFHFDNVTGTIVGFWTPAYAKGI--NVAGYHLHFIS-EDR 180 (232)
T ss_pred CCccEEEEEEEEEeceeEEEecCCCCCCCcCHHHHhcCCceEEEeccEEEEEEEecchhcccc--CCceEEEEEec-CCC
Confidence 3556888889999999999964322 211 11134477777777765 2211111 13345555554 346
Q ss_pred EEeeecCCccEEecceEEEEEeecc
Q 019716 243 VLGGGVAGLLTAASPVQVIIGSFLA 267 (337)
Q Consensus 243 ViGGHLag~LIAastVEVVV~sF~~ 267 (337)
.+||||.+-.+. .+.|-|..+..
T Consensus 181 ~~GGHVld~~~~--~~~~~i~~~~~ 203 (232)
T TIGR01252 181 TFGGHVLDYIID--NGTLEIGQIQE 203 (232)
T ss_pred CCCcceeEEEee--eeEEEEeeccc
Confidence 679999974433 44555544443
No 11
>KOG4565 consensus E93 protein involved in programmed cell death, putative transcription regulator [Transcription]
Probab=26.75 E-value=21 Score=33.37 Aligned_cols=16 Identities=38% Similarity=0.804 Sum_probs=13.2
Q ss_pred CcccccCCCCCCCCCC
Q 019716 78 EPAKRKRGRPRKYAPD 93 (337)
Q Consensus 78 ~~~kkKRGRPRKy~~d 93 (337)
..-+|||||=|+|...
T Consensus 110 KqpRkKRGrYRqYd~e 125 (206)
T KOG4565|consen 110 KQPRKKRGRYRQYDKE 125 (206)
T ss_pred cCccccccchhhhhHH
Confidence 4568999999999864
No 12
>PF13737 DDE_Tnp_1_5: Transposase DDE domain
Probab=26.20 E-value=33 Score=29.46 Aligned_cols=15 Identities=47% Similarity=1.030 Sum_probs=12.4
Q ss_pred CcccccCCCCCCCCC
Q 019716 78 EPAKRKRGRPRKYAP 92 (337)
Q Consensus 78 ~~~kkKRGRPRKy~~ 92 (337)
++...|||||++|..
T Consensus 21 ~~~~~kRGr~~~ySD 35 (112)
T PF13737_consen 21 APPRGKRGRPPRYSD 35 (112)
T ss_pred cCCCCCCCCCcccch
Confidence 456799999999973
No 13
>PF14869 DUF4488: Domain of unknown function (DUF4488)
Probab=25.67 E-value=86 Score=28.01 Aligned_cols=35 Identities=34% Similarity=0.414 Sum_probs=28.2
Q ss_pred cEEEEEeeceeeeEEEeeccCCCCeeeeecceEEEEe
Q 019716 177 AVCILSANGAISNVTLRQAMTSGGTVTYEGRFEILSL 213 (337)
Q Consensus 177 aicILSAiGAVSnVTLrq~~~sg~~~t~eG~fEILSL 213 (337)
..=|||.-|.+.|+++.. . ++..++++|.||+.|=
T Consensus 28 ~lKilS~Dgtf~Ni~~~~-~-~~aiIt~~GtY~~~sD 62 (133)
T PF14869_consen 28 VLKILSDDGTFVNITMIP-K-SGAIITGYGTYEQPSD 62 (133)
T ss_pred cEEEEcCCCcEEEEEEeC-C-CCcEEEEeEEEEEcCC
Confidence 467999999999999932 2 3468999999999874
No 14
>TIGR03836 termin_org_HMW1 cytadherence high molecular weight protein 1 N-terminal region. This model describes the N-terminal region of the Mycoplasma cytadherence protein HMW1, up to but not including the first EAGR box domain. The apparent orthologs in different Mycoplasma species differ profoundly in archictecture C-terminally to the region described here.
Probab=23.09 E-value=58 Score=26.54 Aligned_cols=17 Identities=29% Similarity=0.657 Sum_probs=15.3
Q ss_pred cccceeeeccCCcEEee
Q 019716 12 MSNMRLAFNADGAAVYK 28 (337)
Q Consensus 12 ~~~~~~~~~~dg~~~~~ 28 (337)
-.++.+||.+||..+|-
T Consensus 31 Dg~ikvAyDaDgNgYYI 47 (82)
T TIGR03836 31 DGSIKVAYDADGNGYYI 47 (82)
T ss_pred CCcEEEEEecCCCEEEE
Confidence 47899999999999995
No 15
>PF15333 TAF1D: TATA box-binding protein-associated factor 1D
Probab=22.54 E-value=38 Score=32.39 Aligned_cols=13 Identities=46% Similarity=0.930 Sum_probs=10.1
Q ss_pred cCCCCCCCCCCCC
Q 019716 83 KRGRPRKYAPDGS 95 (337)
Q Consensus 83 KRGRPRKy~~dg~ 95 (337)
|+-+.|||-+-|.
T Consensus 64 KkrkkrKYk~tgr 76 (217)
T PF15333_consen 64 KKRKKRKYKPTGR 76 (217)
T ss_pred HHhhhhccCccCC
Confidence 5667799998775
No 16
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=21.89 E-value=1.7e+02 Score=22.72 Aligned_cols=34 Identities=6% Similarity=0.243 Sum_probs=30.3
Q ss_pred EEEecCCccHHHHHHHHHHhCCccEEEEEee-cee
Q 019716 154 VITVQAGEDVLAKIMSFSQNGPRAVCILSAN-GAI 187 (337)
Q Consensus 154 VIrV~~GEDVvekI~~Faq~~~raicILSAi-GAV 187 (337)
++.+.+.+++.+.+..|.+++...++|+... |-+
T Consensus 52 ~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~ 86 (98)
T cd04618 52 LVSIHPERSLFDAALLLLKNKIHRLPVIDPSTGTG 86 (98)
T ss_pred eEEeCCCCcHHHHHHHHHHCCCCEeeEEECCCCCc
Confidence 7899999999999999999999999999876 543
No 17
>PF11906 DUF3426: Protein of unknown function (DUF3426); InterPro: IPR021834 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 262 to 463 amino acids in length.
Probab=21.71 E-value=1.9e+02 Score=24.64 Aligned_cols=42 Identities=24% Similarity=0.196 Sum_probs=31.7
Q ss_pred cceEEEEeeeeeeecCCCCCCCCCceeEEEEeCCCCcEEeeecC
Q 019716 206 GRFEILSLSGSILLSESGGQRSRTGGLSVSLAGPDGRVLGGGVA 249 (337)
Q Consensus 206 G~fEILSLsGsi~~~e~G~~~s~~~hLHVSLAg~dGqViGGHLa 249 (337)
+.-+++-++|++.+..+.. .....|.++|.|.+|+++.-.+.
T Consensus 65 ~~~~~l~v~g~i~N~~~~~--~~~P~l~l~L~D~~g~~l~~r~~ 106 (149)
T PF11906_consen 65 DGPGVLVVSGTIRNRADFP--QALPALELSLLDAQGQPLARRVF 106 (149)
T ss_pred CCCCEEEEEEEEEeCCCCc--ccCceEEEEEECCCCCEEEEEEE
Confidence 4567888889887655433 47899999999999998755544
No 18
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=20.82 E-value=1.5e+02 Score=23.03 Aligned_cols=37 Identities=19% Similarity=0.289 Sum_probs=30.3
Q ss_pred CceeEEEEecCCccHHHHHHHHHHhCCccEEEEEeec
Q 019716 149 GFTPHVITVQAGEDVLAKIMSFSQNGPRAVCILSANG 185 (337)
Q Consensus 149 ~frphVIrV~~GEDVvekI~~Faq~~~raicILSAiG 185 (337)
-|...+..+.+++.+.+.+..+.+++...++|+..-|
T Consensus 61 ~~~~~~~~v~~~~~l~~al~~m~~~~~~~lpVvd~~~ 97 (111)
T cd04603 61 VYIVPVPIVYCDSKVTDLLRIFRETEPPVVAVVDKEG 97 (111)
T ss_pred eeecCCcEECCCCcHHHHHHHHHHcCCCeEEEEcCCC
Confidence 3556678899999999999999998888889987533
Done!