BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019717
(337 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Naringenin
Length = 355
Score = 262 bits (669), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 130/332 (39%), Positives = 205/332 (61%), Gaps = 15/332 (4%)
Query: 11 ANIGSLSHSNEQVEPEAAVRTCHNGTVSE-------IPTIDLNDPD------QERLTGAI 57
A G +S E + P+ + + ++ + E +PTIDL + + +E +
Sbjct: 10 AKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEEL 69
Query: 58 AEASQEWGIFQVINHGIPSELINKLQGVGREFFELPQEEKEAYARPRDAKDIEGYGTRLQ 117
+AS +WG+ +INHGIP++L+ +++ G EFF L EEKE YA + I+GYG++L
Sbjct: 70 KKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLA 129
Query: 118 KEAEEKKSWVDHIFHRIWPPASRNYRFWPKNPPSYREVNEEYANCMRGVVNKLFRCLSLG 177
A + W D+ FH +P R+ WPK P Y E EYA C+R + K+F+ LS+G
Sbjct: 130 NNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKALSVG 189
Query: 178 LGVEGHALKEAVGG-DELEYMLKINYYPPCPRPDLAPGLVPHTDLSSITILVPNDVPGLL 236
LG+E L++ VGG +EL +KINYYP CP+P+LA G+ HTD+S++T ++ N VPGL
Sbjct: 190 LGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILHNMVPGLQ 249
Query: 237 AFKGDRSIDVNYIPNALIVTIGDQIEILSNGKYKAVLHKATPHKEKTRISWPVFLDPPAD 296
F + + +P+++++ IGD +EILSNGKYK++LH+ +KEK RISW VF +PP D
Sbjct: 250 LFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKD 309
Query: 297 -MVVGPLPQLVNGKNPPKYEAKKYKDYVHFKL 327
+V+ PLP++V+ ++P K+ + + ++ KL
Sbjct: 310 KIVLKPLPEMVSVESPAKFPPRTFAQHIEHKL 341
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin
pdb|1GP6|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin (With 30 Min Exposure To O2)
Length = 356
Score = 262 bits (669), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 130/332 (39%), Positives = 205/332 (61%), Gaps = 15/332 (4%)
Query: 11 ANIGSLSHSNEQVEPEAAVRTCHNGTVSE-------IPTIDLNDPD------QERLTGAI 57
A G +S E + P+ + + ++ + E +PTIDL + + +E +
Sbjct: 11 AKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEEL 70
Query: 58 AEASQEWGIFQVINHGIPSELINKLQGVGREFFELPQEEKEAYARPRDAKDIEGYGTRLQ 117
+AS +WG+ +INHGIP++L+ +++ G EFF L EEKE YA + I+GYG++L
Sbjct: 71 KKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLA 130
Query: 118 KEAEEKKSWVDHIFHRIWPPASRNYRFWPKNPPSYREVNEEYANCMRGVVNKLFRCLSLG 177
A + W D+ FH +P R+ WPK P Y E EYA C+R + K+F+ LS+G
Sbjct: 131 NNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKALSVG 190
Query: 178 LGVEGHALKEAVGG-DELEYMLKINYYPPCPRPDLAPGLVPHTDLSSITILVPNDVPGLL 236
LG+E L++ VGG +EL +KINYYP CP+P+LA G+ HTD+S++T ++ N VPGL
Sbjct: 191 LGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILHNMVPGLQ 250
Query: 237 AFKGDRSIDVNYIPNALIVTIGDQIEILSNGKYKAVLHKATPHKEKTRISWPVFLDPPAD 296
F + + +P+++++ IGD +EILSNGKYK++LH+ +KEK RISW VF +PP D
Sbjct: 251 LFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKD 310
Query: 297 -MVVGPLPQLVNGKNPPKYEAKKYKDYVHFKL 327
+V+ PLP++V+ ++P K+ + + ++ KL
Sbjct: 311 KIVLKPLPEMVSVESPAKFPPRTFAQHIEHKL 342
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana
(Selenomethionine Substituted)
Length = 356
Score = 256 bits (654), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 130/332 (39%), Positives = 201/332 (60%), Gaps = 15/332 (4%)
Query: 11 ANIGSLSHSNEQVEPEAAVRTCHNGTVSE-------IPTIDLNDPD------QERLTGAI 57
A G +S E + P+ + + ++ + E +PTIDL + + +E +
Sbjct: 11 AKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEEL 70
Query: 58 AEASQEWGIFQVINHGIPSELINKLQGVGREFFELPQEEKEAYARPRDAKDIEGYGTRLQ 117
+AS +WG+ +INHGIP++L +++ G EFF L EEKE YA + I+GYG++L
Sbjct: 71 KKASLDWGVXHLINHGIPADLXERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLA 130
Query: 118 KEAEEKKSWVDHIFHRIWPPASRNYRFWPKNPPSYREVNEEYANCMRGVVNKLFRCLSLG 177
A + W D+ FH +P R+ WPK P Y E EYA C+R + K+F+ LS+G
Sbjct: 131 NNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKALSVG 190
Query: 178 LGVEGHALKEAVGG-DELEYMLKINYYPPCPRPDLAPGLVPHTDLSSITILVPNDVPGLL 236
LG+E L++ VGG +EL KINYYP CP+P+LA G+ HTD+S++T ++ N VPGL
Sbjct: 191 LGLEPDRLEKEVGGLEELLLQXKINYYPKCPQPELALGVEAHTDVSALTFILHNXVPGLQ 250
Query: 237 AFKGDRSIDVNYIPNALIVTIGDQIEILSNGKYKAVLHKATPHKEKTRISWPVFLDPPAD 296
F + + +P++++ IGD +EILSNGKYK++LH+ +KEK RISW VF +PP D
Sbjct: 251 LFYEGKWVTAKCVPDSIVXHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKD 310
Query: 297 -MVVGPLPQLVNGKNPPKYEAKKYKDYVHFKL 327
+V+ PLP+ V+ ++P K+ + + ++ KL
Sbjct: 311 KIVLKPLPEXVSVESPAKFPPRTFAQHIEHKL 342
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase
pdb|1WA6|X Chain X, The Structure Of Acc Oxidase
Length = 319
Score = 135 bits (339), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 82/252 (32%), Positives = 132/252 (52%), Gaps = 11/252 (4%)
Query: 57 IAEASQEWGIFQVINHGIPSELINKLQGVGREFFELPQEEKEAYARPRDAKDIEGYGTRL 116
I +A + WG F+++NHGIP E+ + ++ + ++ E++ + +K +EG +
Sbjct: 24 IKDACENWGFFELVNHGIPREVXDTVEKXTKGHYKKCXEQR--FKELVASKALEGVQAEV 81
Query: 117 QKEAEEKKSWVDHIFHRIWPPASRNYRFWPKNPPSYREVNEEYANCMRGVVNKLFRCLSL 176
E ++ H+ P S N P YREV ++A + + +L L
Sbjct: 82 TDXDWESTFFLKHL------PIS-NISEVPDLDEEYREVXRDFAKRLEKLAEELLDLLCE 134
Query: 177 GLGVEGHALKEAVGGDEL-EYMLKINYYPPCPRPDLAPGLVPHTDLSSITILVPND-VPG 234
LG+E LK A G + + K++ YPPCP+PDL GL HTD I +L +D V G
Sbjct: 135 NLGLEKGYLKNAFYGSKGPNFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSG 194
Query: 235 LLAFKGDRSIDVNYIPNALIVTIGDQIEILSNGKYKAVLHKATPHKEKTRISWPVFLDPP 294
L K + IDV ++++V +GDQ+E+++NGKYK+V H+ K+ R S F +P
Sbjct: 195 LQLLKDGQWIDVPPXRHSIVVNLGDQLEVITNGKYKSVXHRVIAQKDGARXSLASFYNPG 254
Query: 295 ADMVVGPLPQLV 306
+D V+ P P LV
Sbjct: 255 SDAVIYPAPALV 266
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
pdb|3OOX|B Chain B, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
Length = 312
Score = 74.7 bits (182), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 72/304 (23%), Positives = 132/304 (43%), Gaps = 20/304 (6%)
Query: 42 TIDLNDPDQERLTGAIAEASQEWGIFQVINHGIPSELINKLQGVGREFFELPQEEKEAYA 101
+ L D R + + + +G + ++ + I+ + FF LP E K+ YA
Sbjct: 11 SFSLYAKDFTRFAQELGASFERYGFAVLSDYDLDQARIDAAVDSAKAFFALPVETKKQYA 70
Query: 102 RPRD-AKDIEGYGTRLQKEAEEKKSWVDHIFH--RIWPPASRNYR------FWPKNPPSY 152
+ A+ +G K A+ + +H R PP R +R WP P++
Sbjct: 71 GVKGGARGYIPFGVETAKGADHYD--LKEFWHXGRDLPPGHR-FRAHXADNVWPAEIPAF 127
Query: 153 REVNEEYANCMRGVVNKLFRCLSLGLGVEGHALKEAVGGDELEYMLKINYYPPCPRPDLA 212
+ N + G K+ ++ L +E K V + +L++ +YPP P+
Sbjct: 128 KHDVSWLYNSLDGXGGKVLEAIATYLKLERDFFKPTV--QDGNSVLRLLHYPPIPKDATG 185
Query: 213 PGLVPHTDLSSITILVPNDVPGLLAFKGD-RSIDVNYIPNALIVTIGDQIEILSNGKYKA 271
H D+++IT+L+ + GL D + + +N P L++ IGD +E L+N +
Sbjct: 186 VRAGAHGDINTITLLLGAEEGGLEVLDRDGQWLPINPPPGCLVINIGDXLERLTNNVLPS 245
Query: 272 VLHKAT-PHKEKT---RISWPVFLDPPADMVVGPLPQLVNGKNPPKY-EAKKYKDYVHFK 326
+H+ P E+ R S P FL +D + L V +NP +Y E+ +++ +
Sbjct: 246 TVHRVVNPPPERRGVPRYSTPFFLHFASDYEIKTLQNCVTAENPDRYPESITADEFLQQR 305
Query: 327 LDEL 330
L E+
Sbjct: 306 LREI 309
>pdb|1IPS|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1IPS|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1QJE|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Ip1 -
Fe Complex)
pdb|1QJF|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Monocyclic Sulfoxide - Fe Complex)
pdb|1QIQ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acmc
Fe Complex)
pdb|1HB4|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB3|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB2|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB1|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Acov Fe Complex)
pdb|1ODM|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-vinylglycine Fe Complex)
pdb|1ODN|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Oxygen-Exposed Product From Anaerobic Ac-Vinylglycine
Fe Complex)
pdb|1OBN|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe-no Complex
pdb|1OC1|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe Complex
pdb|1UZW|A Chain A, Isopenicillin N Synthase With
L-D-(A-Aminoadipoyl)-L-Cysteinyl-D-Isodehydrovaline
pdb|1W03|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Glycine-Fe
Complex
pdb|1W04|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-Cysteinyl-Glycine-Fe-No Complex
pdb|1W05|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
Complex
pdb|1W06|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
No Complex
pdb|2BU9|A Chain A, Isopenicillin N Synthase Complexed With L-Aminoadipoyl-L-
Cysteinyl-L-Hexafluorovaline
pdb|1W3V|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Anaerobic)
pdb|1W3X|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Oxygen Exposed 5
Minutes 20 Bar)
pdb|2IVI|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-methyl-cyclopropylglycine Fe Complex)
pdb|2IVJ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Ac-Cyclopropylglycine Fe Complex)
pdb|1BK0|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acv-Fe
Complex)
pdb|1BLZ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Acv-Fe- No Complex)
pdb|2JB4|A Chain A, Isopenicillin N Synthase With A 2-Thiabicycloheptan-6-One
Product Analogue
pdb|2VAU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
Unexposed)
pdb|2VBB|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
35minutes Oxygen Exposure)
pdb|2VBD|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,l,l-
Acomp (unexposed)
pdb|2VBP|A Chain A, Isopenicillin N Synthase With Substrate Analogue
L,L,L-Acab (Unexposed)
pdb|2VCM|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov
pdb|2VE1|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov (
Oxygen Exposed 1min 20bar)
pdb|2WO7|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,L,D-
Acd2ab (Unexposed)
pdb|2Y6F|A Chain A, Isopenicillin N Synthase With
Ac-D-S-Methyl-3r-Methylcysteine
pdb|2Y60|A Chain A, Isopenicillin N Synthase With Ac-D-Methionine
pdb|2Y86|A Chain A, Isopenicillin N Synthase With Ac-O-Methyl-D-Threonine
pdb|3ZKU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Ahcv
Length = 331
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 85/332 (25%), Positives = 137/332 (41%), Gaps = 39/332 (11%)
Query: 35 GTVSE--IPTIDL------NDPDQERLTGAIAEASQEWGIFQVINHGIPSELINKLQGVG 86
G+VS+ +P ID+ + + R+ I AS++ G F +NHGI + +L
Sbjct: 2 GSVSKANVPKIDVSPLFGDDQAAKMRVAQQIDAASRDTGFFYAVNHGIN---VQRLSQKT 58
Query: 87 REF-FELPQEEK-----EAYARPRDAKDIEGYGTRL-QKEAEEKKSWVDHIFH----RIW 135
+EF + EEK AY + + GY + K+A E +++ F RI
Sbjct: 59 KEFHMSITPEEKWDLAIRAYNKEHQDQVRAGYYLSIPGKKAVESFCYLNPNFTPDHPRIQ 118
Query: 136 PPA-SRNYRFWPKNP--PSYREVNEEYANCMRGVVNKLFRCLSLGLGVEGHALKEAVGGD 192
+ WP P +++ E+Y + G+ + L + +L LG E + D
Sbjct: 119 AKTPTHEVNVWPDETKHPGFQDFAEQYYWDVFGLSSALLKGYALALGKEENFFARHFKPD 178
Query: 193 E-LEYMLKINY-----YPPCPRPDLAPG----LVPHTDLSSITILVPNDVPGLLAFKGDR 242
+ L ++ I Y YP A G H D+S IT+L ++V L
Sbjct: 179 DTLASVVLIRYPYLDPYPEAAIKTAADGTKLSFEWHEDVSLITVLYQSNVQNLQVETAAG 238
Query: 243 SIDVNYIPNALIVTIGDQIEILSNGKYKAVLHKATPHKEKTRISWPVFLDPPADMVVGPL 302
D+ ++ G + L+N YKA +H+ R S P F++ D V+ P
Sbjct: 239 YQDIEADDTGYLINCGSYMAHLTNNYYKAPIHRVK-WVNAERQSLPFFVNLGYDSVIDPF 297
Query: 303 -PQLVNGKNPPKYEAKKYKDYVHFKLDELNKK 333
P+ NGK+ E Y DY+ L L K
Sbjct: 298 DPREPNGKS--DREPLSYGDYLQNGLVSLINK 327
>pdb|2BJS|A Chain A, Isopenicillin N Synthase C-Terminal Truncation Mutant
Length = 325
Score = 57.8 bits (138), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 84/329 (25%), Positives = 136/329 (41%), Gaps = 39/329 (11%)
Query: 35 GTVSE--IPTIDL------NDPDQERLTGAIAEASQEWGIFQVINHGIPSELINKLQGVG 86
G+VS+ +P ID+ + + R+ I AS++ G F +NHGI + +L
Sbjct: 2 GSVSKANVPKIDVSPLFGDDQAAKMRVAQQIDAASRDTGFFYAVNHGIN---VQRLSQKT 58
Query: 87 REF-FELPQEEK-----EAYARPRDAKDIEGYGTRL-QKEAEEKKSWVDHIFH----RIW 135
+EF + EEK AY + + GY + K+A E +++ F RI
Sbjct: 59 KEFHMSITPEEKWDLAIRAYNKEHQDQVRAGYYLSIPGKKAVESFCYLNPNFTPDHPRIQ 118
Query: 136 PPA-SRNYRFWPKNP--PSYREVNEEYANCMRGVVNKLFRCLSLGLGVEGHALKEAVGGD 192
+ WP P +++ E+Y + G+ + L + +L LG E + D
Sbjct: 119 AKTPTHEVNVWPDETKHPGFQDFAEQYYWDVFGLSSALLKGYALALGKEENFFARHFKPD 178
Query: 193 E-LEYMLKINY-----YPPCPRPDLAPG----LVPHTDLSSITILVPNDVPGLLAFKGDR 242
+ L ++ I Y YP A G H D+S IT+L ++V L
Sbjct: 179 DTLASVVLIRYPYLDPYPEAAIKTAADGTKLSFEWHEDVSLITVLYQSNVQNLQVETAAG 238
Query: 243 SIDVNYIPNALIVTIGDQIEILSNGKYKAVLHKATPHKEKTRISWPVFLDPPADMVVGPL 302
D+ ++ G + L+N YKA +H+ R S P F++ D V+ P
Sbjct: 239 YQDIEADDTGYLINCGSYMAHLTNNYYKAPIHRVK-WVNAERQSLPFFVNLGYDSVIDPF 297
Query: 303 -PQLVNGKNPPKYEAKKYKDYVHFKLDEL 330
P+ NGK+ E Y DY+ L L
Sbjct: 298 DPREPNGKS--DREPLSYGDYLQNGLVSL 324
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|B Chain B, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|C Chain C, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|D Chain D, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
Length = 280
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 66/275 (24%), Positives = 114/275 (41%), Gaps = 29/275 (10%)
Query: 39 EIPTIDLNDPDQERLTGAIAEASQEWGIFQVINHGIPSELINKLQGVGREFFELPQEEKE 98
++ TID D + E+ +E G + NH I EL+ ++ + FF E K
Sbjct: 3 KLETIDYRAADSAK---RFVESLRETGFGVLSNHPIDKELVERIYTEWQAFFN--SEAKN 57
Query: 99 AYARPRDAKDIEGYGTRLQKEAEEKKSWVD-HIFHRIWPPASRNYRFWPKNPPSYREVNE 157
+ R+ D G+ E + + D ++ ++P W + P S R
Sbjct: 58 EFXFNRETHD--GFFPASISETAKGHTVKDIKEYYHVYP--------WGRIPDSLRANIL 107
Query: 158 EYANCMRGVVNKLFRCLSLGLGVEGHA-----LKEAVGGDELEYMLKINYYPPCPRPDLA 212
Y + ++L + E A L E + + +L+I +YPP +
Sbjct: 108 AYYEKANTLASELLEWIETYSPDEIKAKFSIPLPEXIANSH-KTLLRILHYPPXTGDEEX 166
Query: 213 PGL--VPHTDLSSITILVPNDVPGLLAFKGDRS-IDVNYIPNALIVTIGDQIEILSNGKY 269
+ H D++ IT+L + PGL D S +DV +I+ IGD ++ S+G +
Sbjct: 167 GAIRAAAHEDINLITVLPTANEPGLQVKAKDGSWLDVPSDFGNIIINIGDXLQEASDGYF 226
Query: 270 KAVLHKAT----PHKEKTRISWPVFLDPPADMVVG 300
+ H+ K K+RIS P+FL P +V+
Sbjct: 227 PSTSHRVINPEGTDKTKSRISLPLFLHPHPSVVLS 261
>pdb|1M53|A Chain A, Crystal Structure Of Isomaltulose Synthase (Pali) From
Klebsiella Sp. Lx3
Length = 570
Score = 31.2 bits (69), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 13/63 (20%)
Query: 116 LQKEAEEKKSWVDHIFHRIWPPASRNYRFWPKNPPSYREVNEEYANCMRGVVNKLFRCLS 175
+QKE+E W + +F++I+P S+++ N++ +RG++ KL S
Sbjct: 10 VQKESEYPAWWKEAVFYQIYPR-------------SFKDTNDDGIGDIRGIIEKLDYLKS 56
Query: 176 LGL 178
LG+
Sbjct: 57 LGI 59
>pdb|1J3N|A Chain A, Crystal Structure Of 3-Oxoacyl-(Acyl-Carrier Protein)
Synthase Ii From Thermus Thermophilus Hb8
pdb|1J3N|B Chain B, Crystal Structure Of 3-Oxoacyl-(Acyl-Carrier Protein)
Synthase Ii From Thermus Thermophilus Hb8
Length = 408
Score = 28.1 bits (61), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 9 VQANIGSLSHSNEQVEPEAAVRTCHNGTVSEIPTIDLNDPDQE 51
++ IG L + VE A V+ ++G + PTI+L DPD E
Sbjct: 332 TKSMIGHLLGAAGAVEAIATVQALYHGVIP--PTINLEDPDPE 372
>pdb|2O8B|B Chain B, Human Mutsalpha (Msh2MSH6) BOUND TO ADP AND A G T MISPAIR
pdb|2O8C|B Chain B, Human Mutsalpha (msh2/msh6) Bound To Adp And An
O6-methyl-guanine T Mispair
pdb|2O8D|B Chain B, Human Mutsalpha (Msh2MSH6) BOUND TO ADP AND A G DU MISPAIR
pdb|2O8E|B Chain B, Human Mutsalpha (Msh2MSH6) BOUND TO A G T MISPAIR, WITH
ADP BOUND TO Msh2 Only
pdb|2O8F|B Chain B, Human Mutsalpha (Msh2MSH6) BOUND TO DNA WITH A SINGLE BASE
T INSERT
Length = 1022
Score = 28.1 bits (61), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 9/55 (16%)
Query: 226 ILVPNDVPGLLAFKGDRSIDV-------NYIPNALIVTIGDQIEILSNGKYKAVL 273
IL+P D P L KG R + ++IPN ++ IG + E NGK VL
Sbjct: 741 ILLPEDTPPFLELKGSRHPCITKTFFGDDFIPNDIL--IGCEEEEQENGKAYCVL 793
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.137 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,411,321
Number of Sequences: 62578
Number of extensions: 513895
Number of successful extensions: 968
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 944
Number of HSP's gapped (non-prelim): 16
length of query: 337
length of database: 14,973,337
effective HSP length: 99
effective length of query: 238
effective length of database: 8,778,115
effective search space: 2089191370
effective search space used: 2089191370
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)