BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 019718
         (336 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1EU1|A Chain A, The Crystal Structure Of Rhodobacter Sphaeroides
           Dimethylsulfoxide Reductase Reveals Two Distinct
           Molybdenum Coordination Environments
          Length = 780

 Score = 31.6 bits (70), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 8/64 (12%)

Query: 50  LEPLWWAGMVTMIVGEVANFVAYV-YAPAVLVTPLGALSIIIRYAVLAHFMLKERLQKMG 108
            E  W  G+V   + E ANFV Y  +    L  PLG  S +I        +  + ++KMG
Sbjct: 559 FEDFWSEGIVEFPITEGANFVRYADFREDPLFNPLGTPSGLIE-------IYSKNIEKMG 611

Query: 109 ILGC 112
              C
Sbjct: 612 YDDC 615


>pdb|1UJT|A Chain A, Solution Structure Of The Second Fibronectin Type Iii
           Domain Of Human Kiaa1568 Protein
          Length = 120

 Score = 30.0 bits (66), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 12/32 (37%), Positives = 19/32 (59%)

Query: 117 VGSVVIVIHAPQEHTPNSVQEIWALATQPDFL 148
           +G V++ +H P   TP +VQ  W +  QP F+
Sbjct: 14  LGDVLVRLHNPVVLTPTTVQVTWTVDRQPQFI 45


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.137    0.413 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,900,435
Number of Sequences: 62578
Number of extensions: 328364
Number of successful extensions: 814
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 813
Number of HSP's gapped (non-prelim): 3
length of query: 336
length of database: 14,973,337
effective HSP length: 99
effective length of query: 237
effective length of database: 8,778,115
effective search space: 2080413255
effective search space used: 2080413255
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 52 (24.6 bits)