Query 019718
Match_columns 336
No_of_seqs 138 out of 672
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 03:59:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019718.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019718hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2922 Uncharacterized conser 100.0 7.8E-68 1.7E-72 497.8 18.1 302 3-305 16-317 (335)
2 PF05653 Mg_trans_NIPA: Magnes 100.0 2.6E-66 5.6E-71 495.9 24.3 297 4-301 3-299 (300)
3 TIGR03340 phn_DUF6 phosphonate 99.2 2.5E-09 5.3E-14 101.2 21.3 252 10-292 3-281 (281)
4 PRK11453 O-acetylserine/cystei 99.0 1E-07 2.2E-12 91.1 20.4 257 11-296 7-289 (299)
5 PRK15430 putative chlorampheni 98.9 1.4E-07 3.1E-12 90.0 18.5 121 1-123 1-144 (296)
6 TIGR00776 RhaT RhaT L-rhamnose 98.9 1.7E-07 3.8E-12 89.5 18.5 224 51-295 56-289 (290)
7 PLN00411 nodulin MtN21 family 98.8 8.8E-07 1.9E-11 87.3 22.4 226 64-302 91-336 (358)
8 PRK02971 4-amino-4-deoxy-L-ara 98.8 2.5E-08 5.4E-13 84.7 8.2 115 8-123 2-121 (129)
9 TIGR00950 2A78 Carboxylate/Ami 98.7 2.2E-06 4.7E-11 79.3 20.6 203 55-289 51-259 (260)
10 PF06027 DUF914: Eukaryotic pr 98.7 3.5E-06 7.7E-11 82.3 22.7 233 47-301 73-312 (334)
11 PRK10532 threonine and homoser 98.7 9.4E-06 2E-10 77.4 24.2 260 5-301 9-288 (293)
12 PRK11689 aromatic amino acid e 98.7 1.2E-05 2.5E-10 76.9 24.6 213 59-294 69-287 (295)
13 PRK11272 putative DMT superfam 98.7 2E-06 4.4E-11 81.9 19.3 212 56-297 74-288 (292)
14 TIGR00817 tpt Tpt phosphate/ph 98.6 2.3E-06 5E-11 81.6 17.0 227 53-301 68-300 (302)
15 PRK15051 4-amino-4-deoxy-L-ara 98.5 7.6E-07 1.6E-11 73.6 9.0 99 14-122 7-107 (111)
16 COG0697 RhaT Permeases of the 98.5 4.1E-05 9E-10 70.8 21.0 212 56-295 75-288 (292)
17 PF10639 UPF0546: Uncharacteri 98.4 4.1E-07 8.9E-12 75.4 5.8 101 21-122 9-112 (113)
18 COG2510 Predicted membrane pro 98.4 1.8E-06 3.9E-11 72.7 9.3 112 10-123 5-138 (140)
19 PF13536 EmrE: Multidrug resis 98.3 2.1E-06 4.6E-11 70.6 7.1 66 57-124 41-106 (113)
20 PF08449 UAA: UAA transporter 98.1 0.0006 1.3E-08 65.3 21.3 222 52-292 66-295 (303)
21 PF06800 Sugar_transport: Suga 98.1 0.00015 3.2E-09 68.9 16.3 213 52-291 43-268 (269)
22 PTZ00343 triose or hexose phos 98.0 0.0004 8.7E-09 68.2 18.3 70 52-123 116-185 (350)
23 PRK13499 rhamnose-proton sympo 98.0 0.00019 4.2E-09 70.4 14.9 287 5-295 4-342 (345)
24 TIGR00688 rarD rarD protein. T 98.0 0.00098 2.1E-08 62.0 18.6 62 61-123 80-141 (256)
25 PRK10532 threonine and homoser 97.9 3.6E-05 7.8E-10 73.4 8.5 125 6-131 146-288 (293)
26 TIGR00950 2A78 Carboxylate/Ami 97.6 0.00051 1.1E-08 63.4 10.9 114 5-119 125-259 (260)
27 PRK10452 multidrug efflux syst 97.6 0.00035 7.5E-09 58.7 8.7 73 54-127 33-106 (120)
28 PRK09541 emrE multidrug efflux 97.6 0.00035 7.7E-09 57.7 8.4 76 50-126 28-105 (110)
29 KOG4510 Permease of the drug/m 97.5 0.00042 9.2E-09 65.4 8.2 270 6-299 36-330 (346)
30 PLN00411 nodulin MtN21 family 97.4 0.00043 9.2E-09 68.4 8.2 117 6-124 187-328 (358)
31 PRK11272 putative DMT superfam 97.4 0.00093 2E-08 63.6 9.4 117 5-122 147-283 (292)
32 PRK11689 aromatic amino acid e 97.4 0.00084 1.8E-08 64.0 9.0 115 6-122 154-285 (295)
33 PF04142 Nuc_sug_transp: Nucle 97.4 0.0077 1.7E-07 56.4 15.1 68 59-127 25-92 (244)
34 COG2510 Predicted membrane pro 97.3 0.0012 2.5E-08 56.0 8.1 66 222-295 75-140 (140)
35 TIGR03340 phn_DUF6 phosphonate 97.3 0.00043 9.3E-09 65.5 6.2 113 8-121 144-280 (281)
36 PF00892 EamA: EamA-like trans 97.3 0.00017 3.7E-09 58.3 2.9 68 54-122 57-124 (126)
37 PRK11453 O-acetylserine/cystei 97.2 0.0026 5.6E-08 60.8 10.2 116 6-122 141-285 (299)
38 PRK10452 multidrug efflux syst 97.2 0.0062 1.4E-07 51.1 11.1 74 224-303 39-112 (120)
39 PRK15051 4-amino-4-deoxy-L-ara 97.1 0.0082 1.8E-07 49.5 11.3 107 176-295 4-110 (111)
40 PF00893 Multi_Drug_Res: Small 97.1 0.0035 7.5E-08 50.0 8.3 65 50-115 27-93 (93)
41 PRK09541 emrE multidrug efflux 97.0 0.013 2.8E-07 48.5 10.8 79 209-296 27-105 (110)
42 KOG2234 Predicted UDP-galactos 96.7 0.082 1.8E-06 51.8 15.4 76 53-129 94-169 (345)
43 PRK10650 multidrug efflux syst 96.6 0.0044 9.6E-08 51.2 5.7 73 49-122 32-106 (109)
44 PRK11431 multidrug efflux syst 96.6 0.0053 1.1E-07 50.4 5.9 72 50-122 27-100 (105)
45 PRK11431 multidrug efflux syst 96.6 0.033 7.2E-07 45.6 10.5 80 207-295 24-103 (105)
46 COG0697 RhaT Permeases of the 96.6 0.01 2.2E-07 54.8 8.4 114 7-122 153-285 (292)
47 COG2962 RarD Predicted permeas 96.5 0.22 4.7E-06 47.8 16.7 76 45-121 62-141 (293)
48 PRK15430 putative chlorampheni 96.3 0.019 4E-07 54.8 8.6 62 61-123 223-284 (296)
49 PRK10650 multidrug efflux syst 96.3 0.058 1.2E-06 44.6 10.2 78 207-293 30-107 (109)
50 COG2076 EmrE Membrane transpor 96.2 0.062 1.3E-06 44.1 10.1 78 209-295 27-104 (106)
51 PRK02971 4-amino-4-deoxy-L-ara 96.2 0.13 2.8E-06 43.7 12.4 74 218-297 51-125 (129)
52 COG2076 EmrE Membrane transpor 96.2 0.01 2.2E-07 48.7 5.1 73 49-122 27-101 (106)
53 KOG2765 Predicted membrane pro 95.9 0.26 5.5E-06 48.9 14.4 87 56-143 161-255 (416)
54 PF00893 Multi_Drug_Res: Small 95.7 0.099 2.1E-06 41.6 8.9 65 209-278 26-90 (93)
55 TIGR00776 RhaT RhaT L-rhamnose 95.4 0.063 1.4E-06 51.3 8.2 113 7-123 151-287 (290)
56 PF13536 EmrE: Multidrug resis 95.4 0.27 5.8E-06 40.1 10.7 70 223-300 43-112 (113)
57 PF06027 DUF914: Eukaryotic pr 95.3 0.12 2.7E-06 50.7 10.0 126 3-130 163-311 (334)
58 PF03151 TPT: Triose-phosphate 95.0 0.15 3.2E-06 43.1 8.4 112 9-121 1-150 (153)
59 KOG1583 UDP-N-acetylglucosamin 94.8 0.48 1E-05 45.4 11.7 79 52-131 65-144 (330)
60 PF06800 Sugar_transport: Suga 94.2 0.31 6.6E-06 46.5 9.2 68 232-301 62-129 (269)
61 PF00892 EamA: EamA-like trans 93.6 0.25 5.3E-06 39.5 6.5 69 218-293 57-125 (126)
62 TIGR00817 tpt Tpt phosphate/ph 93.5 0.18 3.9E-06 48.0 6.4 117 5-122 142-291 (302)
63 COG5006 rhtA Threonine/homoser 93.4 0.59 1.3E-05 44.2 9.4 117 5-124 145-282 (292)
64 PF10639 UPF0546: Uncharacteri 93.4 0.28 6E-06 40.8 6.4 101 181-291 4-111 (113)
65 KOG3912 Predicted integral mem 93.0 0.61 1.3E-05 44.8 8.9 71 54-125 89-159 (372)
66 KOG2766 Predicted membrane pro 92.0 0.53 1.2E-05 44.7 7.1 58 70-128 97-154 (336)
67 TIGR00803 nst UDP-galactose tr 91.9 0.8 1.7E-05 41.6 8.1 115 5-120 82-220 (222)
68 COG5006 rhtA Threonine/homoser 90.8 16 0.00034 34.9 17.2 194 67-291 87-282 (292)
69 COG4975 GlcU Putative glucose 90.0 0.4 8.6E-06 45.2 4.2 225 47-296 52-287 (288)
70 PRK02237 hypothetical protein; 89.4 1.2 2.6E-05 36.6 6.1 48 79-128 61-108 (109)
71 COG1742 Uncharacterized conser 89.2 2 4.4E-05 35.1 7.2 49 79-129 60-108 (109)
72 PTZ00343 triose or hexose phos 88.0 3.1 6.8E-05 40.8 9.2 50 71-121 296-345 (350)
73 KOG4831 Unnamed protein [Funct 87.8 0.82 1.8E-05 37.6 4.1 76 45-122 46-123 (125)
74 PRK13499 rhamnose-proton sympo 83.2 6.9 0.00015 38.7 8.9 61 234-294 92-153 (345)
75 PF06379 RhaT: L-rhamnose-prot 80.9 49 0.0011 32.7 13.7 280 5-294 4-340 (344)
76 PF02694 UPF0060: Uncharacteri 79.3 1.8 3.9E-05 35.5 2.8 48 79-128 59-106 (107)
77 KOG4314 Predicted carbohydrate 78.0 58 0.0013 30.1 12.8 59 65-124 67-125 (290)
78 KOG1580 UDP-galactose transpor 76.3 44 0.00095 31.7 11.2 201 59-279 93-302 (337)
79 PF05653 Mg_trans_NIPA: Magnes 75.6 17 0.00038 35.0 8.9 114 176-298 10-126 (300)
80 PF04142 Nuc_sug_transp: Nucle 72.8 37 0.00079 31.7 10.1 109 5-114 111-243 (244)
81 PF08449 UAA: UAA transporter 71.2 18 0.00039 34.5 7.8 114 7-121 153-294 (303)
82 KOG1441 Glucose-6-phosphate/ph 71.0 11 0.00024 36.8 6.4 75 48-124 81-155 (316)
83 PF15048 OSTbeta: Organic solu 70.6 4.5 9.7E-05 34.1 3.0 43 258-300 20-62 (125)
84 COG4975 GlcU Putative glucose 68.2 5.3 0.00011 37.9 3.3 62 234-297 78-139 (288)
85 COG3169 Uncharacterized protei 66.7 45 0.00097 27.2 7.8 104 3-120 5-111 (116)
86 TIGR00803 nst UDP-galactose tr 64.7 59 0.0013 29.2 9.5 57 227-290 164-220 (222)
87 KOG2765 Predicted membrane pro 58.2 21 0.00046 35.8 5.6 119 5-124 244-390 (416)
88 COG2962 RarD Predicted permeas 54.0 1E+02 0.0022 29.9 9.2 71 209-282 66-136 (293)
89 COG4858 Uncharacterized membra 53.7 1.1E+02 0.0024 27.9 8.8 90 7-108 124-220 (226)
90 PF04342 DUF486: Protein of un 52.7 9.6 0.00021 31.3 1.8 92 9-120 3-104 (108)
91 TIGR00881 2A0104 phosphoglycer 51.1 1.1E+02 0.0025 28.3 9.3 19 164-182 52-70 (379)
92 PF07857 DUF1632: CEO family ( 48.5 65 0.0014 30.5 7.0 50 249-299 85-139 (254)
93 KOG0569 Permease of the major 43.6 2E+02 0.0044 29.8 10.3 122 163-299 81-208 (485)
94 PF11970 Git3_C: G protein-cou 42.9 56 0.0012 25.1 4.7 50 241-290 13-62 (76)
95 PF08507 COPI_assoc: COPI asso 42.7 41 0.00089 28.4 4.3 19 274-292 85-103 (136)
96 TIGR01148 mtrC N5-methyltetrah 42.0 3.2E+02 0.0068 26.1 10.7 138 56-194 75-221 (265)
97 PF06570 DUF1129: Protein of u 40.3 2.2E+02 0.0047 25.7 9.0 56 51-107 143-204 (206)
98 PF04657 DUF606: Protein of un 39.7 61 0.0013 27.5 5.0 34 86-120 100-137 (138)
99 COG2271 UhpC Sugar phosphate p 37.5 4.6E+02 0.01 27.0 11.4 42 272-313 183-224 (448)
100 TIGR00688 rarD rarD protein. T 36.4 2.2E+02 0.0049 25.9 8.6 50 229-281 84-133 (256)
101 KOG2922 Uncharacterized conser 34.7 31 0.00068 33.8 2.6 86 207-304 60-146 (335)
102 KOG1581 UDP-galactose transpor 31.3 5.2E+02 0.011 25.4 18.7 68 61-129 93-160 (327)
103 KOG2533 Permease of the major 30.4 6.3E+02 0.014 26.2 14.4 47 223-269 383-430 (495)
104 TIGR00893 2A0114 d-galactonate 28.6 4.7E+02 0.01 24.1 11.5 16 164-179 51-66 (399)
105 PF12263 DUF3611: Protein of u 27.9 4.5E+02 0.0098 23.6 8.7 53 47-99 102-169 (183)
106 PF04211 MtrC: Tetrahydrometha 27.0 5.6E+02 0.012 24.4 13.5 133 56-189 75-217 (262)
107 PRK09917 hypothetical protein; 25.9 4.5E+02 0.0097 22.9 10.3 100 1-120 1-101 (157)
108 PF07457 DUF1516: Protein of u 25.8 3.8E+02 0.0082 22.0 8.1 44 256-299 46-90 (110)
109 PF04531 Phage_holin_1: Bacter 25.6 1.9E+02 0.0041 22.6 5.2 21 47-67 6-26 (84)
110 PF01306 LacY_symp: LacY proto 25.0 3.6E+02 0.0078 27.4 8.4 72 82-154 145-229 (412)
111 PF08173 YbgT_YccB: Membrane b 24.7 1.1E+02 0.0025 19.1 3.0 20 5-24 5-24 (28)
112 PF07213 DAP10: DAP10 membrane 24.0 1.5E+02 0.0032 23.1 4.2 31 283-315 48-78 (79)
113 KOG1442 GDP-fucose transporter 23.9 42 0.00092 32.5 1.4 56 63-119 114-169 (347)
114 KOG4510 Permease of the drug/m 22.8 2.4E+02 0.0052 27.4 6.2 59 225-296 110-171 (346)
115 TIGR02106 cyd_oper_ybgT cyd op 21.9 1.2E+02 0.0026 19.3 2.7 20 5-24 5-24 (30)
116 PF06157 DUF973: Protein of un 21.6 7.3E+02 0.016 23.9 11.0 107 8-119 47-159 (285)
117 PF09534 Trp_oprn_chp: Tryptop 21.2 1.5E+02 0.0032 26.8 4.3 44 269-312 117-164 (189)
118 PF03605 DcuA_DcuB: Anaerobic 20.7 1.3E+02 0.0029 30.0 4.2 50 77-127 166-242 (364)
No 1
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=7.8e-68 Score=497.84 Aligned_cols=302 Identities=66% Similarity=1.124 Sum_probs=293.1
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHhHHhhhccCCCccCCCccccchhhhHHHHHHHHHHHHHHHHHHHhhcchhHhhh
Q 019718 3 LSENSKGLILAVASSAFIGSSFILKKKGLKRAGASGTRAGVGGYTYLLEPLWWAGMVTMIVGEVANFVAYVYAPAVLVTP 82 (336)
Q Consensus 3 ~~~~~iGv~LAl~sa~~~a~G~vlqk~~~~~~~~~~~~~~~~~~~~~~~p~W~~G~~~~~~g~~~~~~al~~ap~slV~P 82 (336)
+.++++|+.+|+.||++++.++++|||+++|..+.+.|++.+..+|++.|.||+|++.|++|+++||+||+|||+++|+|
T Consensus 16 ~~d~~~G~~LaissS~~Ig~sfilkKkgl~r~~~~~~ra~~gg~~yl~~~~Ww~G~ltm~vGei~NFaAYaFAPasLVtP 95 (335)
T KOG2922|consen 16 SSDNIIGLVLAISSSIFIGSSFILKKKGLKRAGASGLRAGEGGYGYLKEPLWWAGMLTMIVGEIANFAAYAFAPASLVTP 95 (335)
T ss_pred ccCceeeeeehhhccEEEeeehhhhHHHHHHHhhhcccccCCCcchhhhHHHHHHHHHHHHHhHhhHHHHhhchHhhhcc
Confidence 57899999999999999999999999999998887788887889999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHhcccccccchhhHHHhhcceeEEEEecCCCCCCCCHHHHHHHhcChhHHHHHHHHHHHHHHHh
Q 019718 83 LGALSIIIRYAVLAHFMLKERLQKMGILGCITCIVGSVVIVIHAPQEHTPNSVQEIWALATQPDFLIYVAATVSVVLALV 162 (336)
Q Consensus 83 l~a~~lv~~~~~la~~~l~e~~~~~~~~G~~li~~G~~lvv~~~~~~~~~~t~~el~~~~~~~~fl~y~~~~~~~~~~li 162 (336)
||++++++| +++|+++||||++..+.+||++|++|.+++|.|+|++++..|++|+|+++++|+|++|+.+.++++++++
T Consensus 96 LGAlsvi~s-aila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~haP~e~~i~t~~el~~~~~~~~Fliy~~~iil~~~il~ 174 (335)
T KOG2922|consen 96 LGALSVIIS-AILASFFLKEKLNLLGILGCVLCVVGSTTIVIHAPKEQEIESVEEVWELATEPGFLVYVIIIILIVLILI 174 (335)
T ss_pred chhHHHHHH-HHHHHHHHHHHHHHhhhhheeEEecccEEEEEecCcccccccHHHHHHHhcCccHHHHHHHHHHHHHHHh
Confidence 999999999 9999999999999999999999999999999999999999999999999999999999999999889899
Q ss_pred heecccCCCcchhhHHHHHHhhhhHHHHHHHHHHHHHHHhhcCCcccchhHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 019718 163 LHFEPRCGQTNILVYLGICSLMGSLTVVSIKAIGIAIKLTLDGISQIAYPQTWFFLTVAAVCVVTQLNYLNKALDTFNAA 242 (336)
Q Consensus 163 ~~~~~~~g~~~~~~y~~isgllgg~tvl~~K~v~~~l~~~~~g~~~f~~~~~y~ll~~~v~~~~~Q~~~Ln~aL~~~~~~ 242 (336)
++++||+|++|+++|..+|+++|++|++++|+++++++++++|++|+.+|++|+++.+++.|+.+|++||||||+.||++
T Consensus 175 ~~~~p~~g~tnilvyi~i~s~iGS~tV~svKalg~aiklt~~g~~ql~~~~ty~~~l~~~~~~~~Q~~yLNkAL~~fnts 254 (335)
T KOG2922|consen 175 FFYAPRYGQTNILVYIGICSLIGSLTVMSVKALGIAIKLTFSGNNQLFYPLTWIFLLVVATCVSTQMNYLNKALDLFNTS 254 (335)
T ss_pred eeecccccccceeehhhHhhhhcceeeeeHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhHHHHHHHHHHHHHHHHhcccCCCChhHHHHHHHHHHHHHHhhhhhccccCCCCCCCCC
Q 019718 243 IVSPVYYVMFTTLTIIASAIMFKDWSGQDVSGIASEICGFITVLSGTIILHATREHEQTTAPV 305 (336)
Q Consensus 243 ~v~P~~~v~~~~~~i~~G~i~f~E~~~~~~~~~~~~~~G~~~~i~GV~lLs~~~~~~~~~~~~ 305 (336)
++.|++|++||+.++++|.|+|+||++.+..+..+++||+.+++.|+++|.+.||.+.+.+..
T Consensus 255 lV~PiyyV~fTtl~I~as~I~Fkew~~~~~~~i~~~~~Gf~ti~~G~flL~~~kd~~~~~~s~ 317 (335)
T KOG2922|consen 255 IVSPIYYVMFTTLVILASAILFKEWSGQDALDIAGELCGFVTIFLGIFLLHRTKDMEISLASY 317 (335)
T ss_pred hcchhHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhHHHhhheeeEeeeecccccccccc
Confidence 999999999999999999999999999999999999999999999999999999998765443
No 2
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=100.00 E-value=2.6e-66 Score=495.93 Aligned_cols=297 Identities=46% Similarity=0.815 Sum_probs=283.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhHHhhhccCCCccCCCccccchhhhHHHHHHHHHHHHHHHHHHHhhcchhHhhhh
Q 019718 4 SENSKGLILAVASSAFIGSSFILKKKGLKRAGASGTRAGVGGYTYLLEPLWWAGMVTMIVGEVANFVAYVYAPAVLVTPL 83 (336)
Q Consensus 4 ~~~~iGv~LAl~sa~~~a~G~vlqk~~~~~~~~~~~~~~~~~~~~~~~p~W~~G~~~~~~g~~~~~~al~~ap~slV~Pl 83 (336)
+++++|+.+|++||+++++|+++|||+++|+++++.|++.+.++|++||+||+|+.++++|++++++||+|||+++|||+
T Consensus 3 ~~~~iGv~lav~ss~~~~~g~~lqk~~~~r~~~~~~~~~~~~~~~l~~~~W~~G~~~~~~g~~~~~~Al~~ap~slv~Pl 82 (300)
T PF05653_consen 3 TDFYIGVLLAVVSSIFIAVGFNLQKKSHLRLPRGSLRAGSGGRSYLRRPLWWIGLLLMVLGEILNFVALGFAPASLVAPL 82 (300)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhhHHHhhHHHHHHHHHHhcchHHHHHHHHhhhHHHHHHH
Confidence 57899999999999999999999999999988765555445689999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHhcccccccchhhHHHhhcceeEEEEecCCCCCCCCHHHHHHHhcChhHHHHHHHHHHHHHHHhh
Q 019718 84 GALSIIIRYAVLAHFMLKERLQKMGILGCITCIVGSVVIVIHAPQEHTPNSVQEIWALATQPDFLIYVAATVSVVLALVL 163 (336)
Q Consensus 84 ~a~~lv~~~~~la~~~l~e~~~~~~~~G~~li~~G~~lvv~~~~~~~~~~t~~el~~~~~~~~fl~y~~~~~~~~~~li~ 163 (336)
+++++++| ++++++++|||++++|++|++++++|+++++.++|++++.+|++|+++++++|+|+.|+.+..++.+.+++
T Consensus 83 g~~~lv~~-~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~~~~~~~~~~t~~~l~~~~~~~~fl~y~~~~~~~~~~L~~ 161 (300)
T PF05653_consen 83 GALSLVFN-AVLARFFLGEKLTRRDIVGCALIILGSVLIVIFAPKEEPIHTLDELIALLSQPGFLVYFILVLVLILILIF 161 (300)
T ss_pred HhhhhhhH-HHHhHHHhcccchHhHHhhHHHHHhhheeeEEeCCCCCCcCCHHHHHHHhcCcceehhHHHHHHHHHHHHH
Confidence 99999999 99999999999999999999999999999999999999999999999999999999999888887777777
Q ss_pred eecccCCCcchhhHHHHHHhhhhHHHHHHHHHHHHHHHhhcCCcccchhHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Q 019718 164 HFEPRCGQTNILVYLGICSLMGSLTVVSIKAIGIAIKLTLDGISQIAYPQTWFFLTVAAVCVVTQLNYLNKALDTFNAAI 243 (336)
Q Consensus 164 ~~~~~~g~~~~~~y~~isgllgg~tvl~~K~v~~~l~~~~~g~~~f~~~~~y~ll~~~v~~~~~Q~~~Ln~aL~~~~~~~ 243 (336)
+.+||+|+++.++|.++||++|++|++++|++++.++++++|++||.+|.+|++++++++|++.|++|||+||++||++.
T Consensus 162 ~~~~r~g~~~i~vyi~i~sl~Gs~tvl~~K~i~~~i~~~~~g~~~f~~~~~y~l~~~~v~~~~~Q~~~LN~aL~~fd~~~ 241 (300)
T PF05653_consen 162 FIKPRYGRRNILVYISICSLIGSFTVLSAKAISILIKLTFSGDNQFTYPLTYLLLLVLVVTAVLQLYYLNKALKRFDTSL 241 (300)
T ss_pred hhcchhcccceEEEEEEeccccchhhhHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccceE
Confidence 88899999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHhcccCCCChhHHHHHHHHHHHHHHhhhhhccccCCCCC
Q 019718 244 VSPVYYVMFTTLTIIASAIMFKDWSGQDVSGIASEICGFITVLSGTIILHATREHEQT 301 (336)
Q Consensus 244 v~P~~~v~~~~~~i~~G~i~f~E~~~~~~~~~~~~~~G~~~~i~GV~lLs~~~~~~~~ 301 (336)
++|++|++||++++++|+++|||+++++++++.++.+|+.++++||++|++++|.++.
T Consensus 242 V~P~~~v~~t~~~i~~g~i~f~e~~~~~~~~~~~~~~G~~~ii~GV~lL~~~~~~~~~ 299 (300)
T PF05653_consen 242 VVPVYYVFFTLSSIIGGAIFFQEFSRMTAWQIIGFLCGFLIIIIGVFLLSSSKDKEIS 299 (300)
T ss_pred EEeehhHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhheeeccCchhcc
Confidence 9999999999999999999999999999999999999999999999999999998764
No 3
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.21 E-value=2.5e-09 Score=101.24 Aligned_cols=252 Identities=17% Similarity=0.172 Sum_probs=144.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHhhhccC-C-----------C----ccCCCccccchhhhH---HHHHHHHHHHHHHHHH
Q 019718 10 LILAVASSAFIGSSFILKKKGLKRAGAS-G-----------T----RAGVGGYTYLLEPLW---WAGMVTMIVGEVANFV 70 (336)
Q Consensus 10 v~LAl~sa~~~a~G~vlqk~~~~~~~~~-~-----------~----~~~~~~~~~~~~p~W---~~G~~~~~~g~~~~~~ 70 (336)
..+.+.++++.|...++.||..++++.- . + +.....++..++..| ..+......+..+...
T Consensus 3 ~~~~~~aa~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (281)
T TIGR03340 3 LTLVVFSALMHAGWNLMAKSHADKEPDFLWWALLAHSVLLTPYGLWYLAQVGWSRLPATFWLLLAISAVANMVYFLGLAQ 82 (281)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhcccCCCCCcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 5688899999999999999754443210 0 0 000000111112222 1233335566678888
Q ss_pred HHhhcchhHhhhhhhhHHHHHHHHHHHHHhcccccccchhhHHHhhcceeEEEEecCCCCCCCCHHHHHHHhcChhHHHH
Q 019718 71 AYVYAPAVLVTPLGALSIIIRYAVLAHFMLKERLQKMGILGCITCIVGSVVIVIHAPQEHTPNSVQEIWALATQPDFLIY 150 (336)
Q Consensus 71 al~~ap~slV~Pl~a~~lv~~~~~la~~~l~e~~~~~~~~G~~li~~G~~lvv~~~~~~~~~~t~~el~~~~~~~~fl~y 150 (336)
++..+|.+..+|+...+.+++ .+++.+++|||+++++|.|..++..|+.++.. ++.++ .+. .+. .+
T Consensus 83 a~~~~~~~~~~~l~~~~p~~~-~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~--~~~~~-~~~---------~g~-~~ 148 (281)
T TIGR03340 83 AYHHADVGLVYPLARSSPLLV-AIWATLTLGETLSPLAWLGILIITLGLLVLGL--SRFAQ-HRR---------KAY-AW 148 (281)
T ss_pred HHhcCChhhhhhHHhhhHHHH-HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc--ccccc-cch---------hHH-HH
Confidence 999999999999999999999 99999999999999999999999999876643 22211 111 111 11
Q ss_pred HHHHHHHHHHHhhe-ecccCCCc-----chhhHHHHHHhhhhH-HHHHHHHHHHHHHHhhcCCcc-cchhHHHHHHHHHH
Q 019718 151 VAATVSVVLALVLH-FEPRCGQT-----NILVYLGICSLMGSL-TVVSIKAIGIAIKLTLDGISQ-IAYPQTWFFLTVAA 222 (336)
Q Consensus 151 ~~~~~~~~~~li~~-~~~~~g~~-----~~~~y~~isgllgg~-tvl~~K~v~~~l~~~~~g~~~-f~~~~~y~ll~~~v 222 (336)
..+. .++.-.+. ..++..++ ....+...+-++++. ...... . .++.+. ...+..+.++....
T Consensus 149 ~l~a--al~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~---~~~~~~~~~~~~~~~~~~~~~ 218 (281)
T TIGR03340 149 ALAA--ALGTAIYSLSDKAAALGVPAFYSALGYLGIGFLAMGWPFLLLYL-----K---RHGRSMFPYARQILPSATLGG 218 (281)
T ss_pred HHHH--HHHHHHhhhhccccccchhcccccHHHHHHHHHHHHHHHHHHHH-----H---HhccchhhhHHHHHHHHHHHH
Confidence 1111 11111111 12221111 111121122122211 111100 0 011111 11222233333333
Q ss_pred HHHHHHHHHHHHhhccccccchhhhHHHHHHHHHHHHHHHHhcccCCCChhHHHHHHHHHHHHHHhhhhh
Q 019718 223 VCVVTQLNYLNKALDTFNAAIVSPVYYVMFTTLTIIASAIMFKDWSGQDVSGIASEICGFITVLSGTIIL 292 (336)
Q Consensus 223 ~~~~~Q~~~Ln~aL~~~~~~~v~P~~~v~~~~~~i~~G~i~f~E~~~~~~~~~~~~~~G~~~~i~GV~lL 292 (336)
.+........++++++.+++.+.+..|. .++.+++.|.++++|..+ +. ...|.++++.|++++
T Consensus 219 ~~s~l~~~l~~~al~~~~a~~~~~~~~l-~pv~a~l~g~~~lgE~~~--~~----~~iG~~lil~Gv~l~ 281 (281)
T TIGR03340 219 LMIGGAYALVLWAMTRLPVATVVALRNT-SIVFAVVLGIWFLNERWY--LT----RLMGVCIIVAGLVVL 281 (281)
T ss_pred HHHHHHHHHHHHHHhhCCceEEEeeccc-HHHHHHHHHHHHhCCCcc--HH----HHHHHHHHHHhHHhC
Confidence 4444455678899999999998888766 488899999999999543 33 446667788888764
No 4
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=98.96 E-value=1e-07 Score=91.09 Aligned_cols=257 Identities=18% Similarity=0.211 Sum_probs=139.6
Q ss_pred HHHHHHHHHHHHHHHHHHhHHhhhccC---CCccC---CCccccc------hhhhHHHHHHHHHHHHHHHHHHHhh-cch
Q 019718 11 ILAVASSAFIGSSFILKKKGLKRAGAS---GTRAG---VGGYTYL------LEPLWWAGMVTMIVGEVANFVAYVY-APA 77 (336)
Q Consensus 11 ~LAl~sa~~~a~G~vlqk~~~~~~~~~---~~~~~---~~~~~~~------~~p~W~~G~~~~~~g~~~~~~al~~-ap~ 77 (336)
.+++.++++-+......|.+..+.+.. ..|.. .-..... ++.....|+........+.+.++.+ .|.
T Consensus 7 l~~l~~~~~Wg~~~~~~k~~~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~a 86 (299)
T PRK11453 7 VLALLVVVVWGLNFVVIKVGLHNMPPLMLAGLRFMLVAFPAIFFVARPKVPLNLLLGYGLTISFGQFAFLFCAINFGMPA 86 (299)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence 456777778788888888765433210 01100 0000000 1111122333233333455667666 477
Q ss_pred hHhhhhhhhHHHHHHHHHHHHHhcccccccchhhHHHhhcceeEEEEecCCCCCCCC-HHHHHHHhcChhHHHHHHHHHH
Q 019718 78 VLVTPLGALSIIIRYAVLAHFMLKERLQKMGILGCITCIVGSVVIVIHAPQEHTPNS-VQEIWALATQPDFLIYVAATVS 156 (336)
Q Consensus 78 slV~Pl~a~~lv~~~~~la~~~l~e~~~~~~~~G~~li~~G~~lvv~~~~~~~~~~t-~~el~~~~~~~~fl~y~~~~~~ 156 (336)
+..+-+.+...+++ .+++++++|||++++++.|+++..+|+.++.. ...++...+ ..++ +.....+
T Consensus 87 ~~a~~l~~~~pi~~-~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~-~~~~~~~~~~~G~~-----------l~l~aal 153 (299)
T PRK11453 87 GLASLVLQAQAFFT-IVLGAFTFGERLQGKQLAGIALAIFGVLVLIE-DSLNGQHVAMLGFM-----------LTLAAAF 153 (299)
T ss_pred HHHHHHHHhHHHHH-HHHHHHHhcCcCcHHHHHHHHHHHHhHHHhcc-ccCCCcchhHHHHH-----------HHHHHHH
Confidence 78888888899999 99999999999999999999999999876652 111111111 0111 1111111
Q ss_pred -HHHHHhheecccCC----CcchhhHHHHHHhhhhHHHHHHHHHHHHHHHhhcCC-----c-ccchhHH-HHHHHHHHHH
Q 019718 157 -VVLALVLHFEPRCG----QTNILVYLGICSLMGSLTVVSIKAIGIAIKLTLDGI-----S-QIAYPQT-WFFLTVAAVC 224 (336)
Q Consensus 157 -~~~~li~~~~~~~g----~~~~~~y~~isgllgg~tvl~~K~v~~~l~~~~~g~-----~-~f~~~~~-y~ll~~~v~~ 224 (336)
..+.. ...+|.. ......+.....++++.-... .+. . .++. + ...++.. +.++...+.+
T Consensus 154 ~~a~~~--v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~---~~~~~~~~~~~~~~~~~~~~~l~~l~i~~ 224 (299)
T PRK11453 154 SWACGN--IFNKKIMSHSTRPAVMSLVVWSALIPIIPFFV---ASL-I---LDGSATMIHSLVTIDMTTILSLMYLAFVA 224 (299)
T ss_pred HHHHHH--HHHHHHhcccCccchhHHHHHHHHHHHHHHHH---HHH-H---hcCchhhhhhhccCCHHHHHHHHHHHHHH
Confidence 11111 1112211 111122222222222211110 000 0 1111 0 0112333 3345555677
Q ss_pred HHHHHHHHHHhhccccccchhhhHHHHHHHHHHHHHHHHhcccCCCChhHHHHHHHHHHHHHHhhhhhcccc
Q 019718 225 VVTQLNYLNKALDTFNAAIVSPVYYVMFTTLTIIASAIMFKDWSGQDVSGIASEICGFITVLSGTIILHATR 296 (336)
Q Consensus 225 ~~~Q~~~Ln~aL~~~~~~~v~P~~~v~~~~~~i~~G~i~f~E~~~~~~~~~~~~~~G~~~~i~GV~lLs~~~ 296 (336)
+..+....++++++.++..+.++ ....|+++++.|.++++|.. ++.+ .+|.+++++|+++....+
T Consensus 225 t~~~~~l~~~~l~~~~a~~~s~~-~~l~Pv~a~~~~~l~lgE~~--~~~~----~iG~~lI~~gv~l~~~~~ 289 (299)
T PRK11453 225 TIVGYGIWGTLLGRYETWRVAPL-SLLVPVVGLASAALLLDERL--TGLQ----FLGAVLIMAGLYINVFGL 289 (299)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHH-HHHHHHHHHHHHHHHhCCCc--cHHH----HHHHHHHHHHHHHHhcch
Confidence 77788889999999999877775 46889999999999999954 3443 567778888888765544
No 5
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=98.88 E-value=1.4e-07 Score=89.99 Aligned_cols=121 Identities=20% Similarity=0.108 Sum_probs=90.9
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHhHHhhhccC---CCcc--------------C--CCccccchhhhH----HHH
Q 019718 1 MGLSENSKGLILAVASSAFIGSSFILKKKGLKRAGAS---GTRA--------------G--VGGYTYLLEPLW----WAG 57 (336)
Q Consensus 1 ~~~~~~~iGv~LAl~sa~~~a~G~vlqk~~~~~~~~~---~~~~--------------~--~~~~~~~~~p~W----~~G 57 (336)
|.|++...|..+.+.++++.+...+.-|.. .+.+.. -.|. + ...++..+++++ ..|
T Consensus 1 ~~~~~~~~g~~~~l~a~~~wg~~~~~~k~~-~~~~~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (296)
T PRK15430 1 MDAKQTRQGVLLALAAYFIWGIAPAYFKLI-YYVPADEILTHRVIWSFFFMVVLMSICRQWSYLKTLIQTPQKIFMLAVS 79 (296)
T ss_pred CCchhhhhHHHHHHHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcCHHHHHHHHHH
Confidence 789999999999999999999888888753 211100 0000 0 000001112222 255
Q ss_pred HHHHHHHHHHHHHHHhhcchhHhhhhhhhHHHHHHHHHHHHHhcccccccchhhHHHhhcceeEEE
Q 019718 58 MVTMIVGEVANFVAYVYAPAVLVTPLGALSIIIRYAVLAHFMLKERLQKMGILGCITCIVGSVVIV 123 (336)
Q Consensus 58 ~~~~~~g~~~~~~al~~ap~slV~Pl~a~~lv~~~~~la~~~l~e~~~~~~~~G~~li~~G~~lvv 123 (336)
.....++..+.+.++...|.+...-+....-++. .+++.+++|||+++++|.|+++..+|++++.
T Consensus 80 ~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v-~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~ 144 (296)
T PRK15430 80 AVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVN-IVLGMIFLGERFRRMQWLAVILAICGVLVQL 144 (296)
T ss_pred HHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH
Confidence 5667778889999999999999999999999999 9999999999999999999999999987653
No 6
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=98.87 E-value=1.7e-07 Score=89.51 Aligned_cols=224 Identities=8% Similarity=0.092 Sum_probs=139.1
Q ss_pred hhhHHHHHHH---HHHHHHHHHHHHhhcchhHhhhhhh-hHHHHHHHHHHHHHhcccccccc----hhhHHHhhcceeEE
Q 019718 51 EPLWWAGMVT---MIVGEVANFVAYVYAPAVLVTPLGA-LSIIIRYAVLAHFMLKERLQKMG----ILGCITCIVGSVVI 122 (336)
Q Consensus 51 ~p~W~~G~~~---~~~g~~~~~~al~~ap~slV~Pl~a-~~lv~~~~~la~~~l~e~~~~~~----~~G~~li~~G~~lv 122 (336)
...|..|+.. ...|+++.+.|.....+++-.|+.. +.++++ .+.+.+++||+.++++ +.|.+++++|+.++
T Consensus 56 ~~~~~~g~l~G~~w~ig~~~~~~ai~~~gva~a~~i~~~~~~v~~-~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~ 134 (290)
T TIGR00776 56 LSIFLVGLLSGAFWALGQINQFKSMRYMGVSKTMPISTGFQLVGG-TLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLT 134 (290)
T ss_pred cHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHhHHHHHHHHHHH-HHHHHHHhhhccchHHHHHHHHHHHHHHHhHheE
Confidence 4455668776 8899999999999999999999999 999999 9999999999999999 99999999998877
Q ss_pred EEecCCCCCCCCHHHHHHHhcChhHHHHHHHHHHHHHHHhheecccCCCcchh--hHHHHHHhhhhHHHHHHHHHHHHHH
Q 019718 123 VIHAPQEHTPNSVQEIWALATQPDFLIYVAATVSVVLALVLHFEPRCGQTNIL--VYLGICSLMGSLTVVSIKAIGIAIK 200 (336)
Q Consensus 123 v~~~~~~~~~~t~~el~~~~~~~~fl~y~~~~~~~~~~li~~~~~~~g~~~~~--~y~~isgllgg~tvl~~K~v~~~l~ 200 (336)
....+++.+ .++... .+.=+.+..+..+ ..-.+..-+|+-..++. .+....|++.+-.++...-. +
T Consensus 135 ~~~~~~~~~---~~~~~~---~~~Gi~~~l~sg~--~y~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~ 202 (290)
T TIGR00776 135 SRSKDKSAG---IKSEFN---FKKGILLLLMSTI--GYLVYVVVAKAFGVDGLSVLLPQAIGMVIGGIIFNLGHI----L 202 (290)
T ss_pred Eeccccccc---cccccc---hhhHHHHHHHHHH--HHHHHHHHHHHcCCCcceehhHHHHHHHHHHHHHHHHHh----c
Confidence 554322211 011000 0111222222111 11111112221111221 11223333222222221110 0
Q ss_pred HhhcCCcccchhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhHHHHHHHHHHHHHHHHhcccCCCChhHHHHHHH
Q 019718 201 LTLDGISQIAYPQTWFFLTVAAVCVVTQLNYLNKALDTFNAAIVSPVYYVMFTTLTIIASAIMFKDWSGQDVSGIASEIC 280 (336)
Q Consensus 201 ~~~~g~~~f~~~~~y~ll~~~v~~~~~Q~~~Ln~aL~~~~~~~v~P~~~v~~~~~~i~~G~i~f~E~~~~~~~~~~~~~~ 280 (336)
. ..+.....+..++..+. ...+..+...+++++......++.....++++.+.|..+++|.. ++.++..+.+
T Consensus 203 ---~--~~~~~~~~~~~~~~Gi~-~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~--~~~~~~~~~i 274 (290)
T TIGR00776 203 ---A--KPLKKYAILLNILPGLM-WGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKK--TKREMIAISV 274 (290)
T ss_pred ---c--cchHHHHHHHHHHHHHH-HHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCC--CcceeehhHH
Confidence 0 11222233333334444 35566667777775555566666777779999999999999965 4789999999
Q ss_pred HHHHHHHhhhhhccc
Q 019718 281 GFITVLSGTIILHAT 295 (336)
Q Consensus 281 G~~~~i~GV~lLs~~ 295 (336)
|+++++.|+++++-.
T Consensus 275 G~~lIi~~~~l~~~~ 289 (290)
T TIGR00776 275 GIILIIIAANILGIG 289 (290)
T ss_pred HHHHHHHHHHHHhcc
Confidence 999999999988754
No 7
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=98.83 E-value=8.8e-07 Score=87.34 Aligned_cols=226 Identities=13% Similarity=0.146 Sum_probs=119.6
Q ss_pred HHHHHHHHHhhcchhHhhhhhhhHHHHHHHHHHHHH------hcccccccchhhHHHhhcceeEEEEecCCC------CC
Q 019718 64 GEVANFVAYVYAPAVLVTPLGALSIIIRYAVLAHFM------LKERLQKMGILGCITCIVGSVVIVIHAPQE------HT 131 (336)
Q Consensus 64 g~~~~~~al~~ap~slV~Pl~a~~lv~~~~~la~~~------l~e~~~~~~~~G~~li~~G~~lvv~~~~~~------~~ 131 (336)
...+.+.++.+.|.+...=+.....+++ ++++.++ +|||++++++.|++++.+|+.++...+... +.
T Consensus 91 ~~~~~~~gl~~tsa~~asll~~~~P~~~-~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~~ 169 (358)
T PLN00411 91 YVITGYIGIEYSNPTLASAISNITPALT-FILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYHGPRVFVASSPP 169 (358)
T ss_pred HHHHHHHHHhhccHHHHHHHHHhhHHHH-HHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHccCcccccccccc
Confidence 3446788999999999999999999999 9999999 699999999999999999987654322110 00
Q ss_pred CCCHHHHH--HHhcChhHHHHHHHHHH-HHHHHhh-eecccCCCc--chhhHHHHHHhhhhHHHHHHHHHHHHHHHhhcC
Q 019718 132 PNSVQEIW--ALATQPDFLIYVAATVS-VVLALVL-HFEPRCGQT--NILVYLGICSLMGSLTVVSIKAIGIAIKLTLDG 205 (336)
Q Consensus 132 ~~t~~el~--~~~~~~~fl~y~~~~~~-~~~~li~-~~~~~~g~~--~~~~y~~isgllgg~tvl~~K~v~~~l~~~~~g 205 (336)
..+..+.. ....+.....-..+... .++.-++ ...+|..++ ....+....+++++.-....-. +.+..+.
T Consensus 170 ~~~~~~~~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l----~~~~~~~ 245 (358)
T PLN00411 170 YLNFRQLSPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMSEYPAAFTVSFLYTVCVSIVTSMIGL----VVEKNNP 245 (358)
T ss_pred cccccccccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHhHHHHHHHHHHHHHHHHHHH----HHccCCc
Confidence 00000000 00000001101111111 1111011 111221111 1122222223333222211111 1110000
Q ss_pred Ccccc--hhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhHHHHHHHHHHHHHHHHhcccCCCChhHHHHHHHHHH
Q 019718 206 ISQIA--YPQTWFFLTVAAVCVVTQLNYLNKALDTFNAAIVSPVYYVMFTTLTIIASAIMFKDWSGQDVSGIASEICGFI 283 (336)
Q Consensus 206 ~~~f~--~~~~y~ll~~~v~~~~~Q~~~Ln~aL~~~~~~~v~P~~~v~~~~~~i~~G~i~f~E~~~~~~~~~~~~~~G~~ 283 (336)
..... .+..+.++...+.+.+ -..+.|+++++-+++... ++.-..|+++++.|.++++|.. ++. ..+|.+
T Consensus 246 ~~~~~~~~~~~~~i~y~~i~t~l-ay~lw~~~v~~~ga~~as-~~~~L~PV~a~llg~l~LgE~l--t~~----~~iG~~ 317 (358)
T PLN00411 246 SVWIIHFDITLITIVTMAIITSV-YYVIHSWTVRHKGPLYLA-IFKPLSILIAVVMGAIFLNDSL--YLG----CLIGGI 317 (358)
T ss_pred ccceeccchHHHHHHHHHHHHHH-HHHHHHHHHhccCchHHH-HHHhHHHHHHHHHHHHHhCCCC--cHH----HHHHHH
Confidence 00111 1122222222223333 334688999998887644 4456778889999999999954 344 347888
Q ss_pred HHHHhhhhhccccCCCCCC
Q 019718 284 TVLSGTIILHATREHEQTT 302 (336)
Q Consensus 284 ~~i~GV~lLs~~~~~~~~~ 302 (336)
+++.|+.+..+.+..|.++
T Consensus 318 LIl~Gv~l~~~~~~~~~~~ 336 (358)
T PLN00411 318 LITLGFYAVMWGKANEEKD 336 (358)
T ss_pred HHHHHHHHHHhhhhhhhhh
Confidence 8999999988766555443
No 8
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=98.77 E-value=2.5e-08 Score=84.67 Aligned_cols=115 Identities=17% Similarity=0.162 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHhhhccCCCccC-CCccccchhh--hHHHHHHHHHHHHHHHHHHHhhcchhHhhhhh
Q 019718 8 KGLILAVASSAFIGSSFILKKKGLKRAGASGTRAG-VGGYTYLLEP--LWWAGMVTMIVGEVANFVAYVYAPAVLVTPLG 84 (336)
Q Consensus 8 iGv~LAl~sa~~~a~G~vlqk~~~~~~~~~~~~~~-~~~~~~~~~p--~W~~G~~~~~~g~~~~~~al~~ap~slV~Pl~ 84 (336)
+|.++.+.+.++.+.|..+-|++.++.++.+.... ........+| .-+.|+.++++++.++..++...|++...|+-
T Consensus 2 ~~~~~i~~sv~l~~~gQl~~K~g~~~~g~~~~~~~~~~~~~~~~~p~~~i~lgl~~~~la~~~w~~aL~~~~ls~Ayp~~ 81 (129)
T PRK02971 2 MGYLWGLASVLLASVAQLSLKWGMSRLPLLSHAWDFIAALLAFGLALRAVLLGLAGYALSMLCWLKALRYLPLSRAYPLL 81 (129)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhhCCCccchhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHH
Confidence 46778889999999999999999887664221110 0011234567 77899999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHH--HhcccccccchhhHHHhhcceeEEE
Q 019718 85 ALSIIIRYAVLAHF--MLKERLQKMGILGCITCIVGSVVIV 123 (336)
Q Consensus 85 a~~lv~~~~~la~~--~l~e~~~~~~~~G~~li~~G~~lvv 123 (336)
+...++. .+.+.. ++||+++..++.|++++++|+.++.
T Consensus 82 sl~~~~v-~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~ 121 (129)
T PRK02971 82 SLSYALV-YLAAMLLPWFNETFSLKKTLGVACIMLGVWLIN 121 (129)
T ss_pred HHHHHHH-HHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhc
Confidence 9998888 888885 7999999999999999999987764
No 9
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=98.73 E-value=2.2e-06 Score=79.29 Aligned_cols=203 Identities=16% Similarity=0.157 Sum_probs=119.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhcchhHhhhhhhhHHHHHHHHHHHHHhcccccccchhhHHHhhcceeEEEEecCCCCCCCC
Q 019718 55 WAGMVTMIVGEVANFVAYVYAPAVLVTPLGALSIIIRYAVLAHFMLKERLQKMGILGCITCIVGSVVIVIHAPQEHTPNS 134 (336)
Q Consensus 55 ~~G~~~~~~g~~~~~~al~~ap~slV~Pl~a~~lv~~~~~la~~~l~e~~~~~~~~G~~li~~G~~lvv~~~~~~~~~~t 134 (336)
..|.....+...+.+.|+.+.|.+...++.++..+++ .+++.+++|||++++++.|+.+.++|+.++...+ +.+. +
T Consensus 51 ~~~~~~~~l~~~~~~~a~~~~~~~~~~ii~~~~P~~~-~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~~~--~~~~-~ 126 (260)
T TIGR00950 51 LLGALQIGVFYVLYFVAVKRLPVGEAALLLYLAPLYV-TLLSDLMGKERPRKLVLLAAVLGLAGAVLLLSDG--NLSI-N 126 (260)
T ss_pred HHHHHHHHHHHHHHHHHHHhcChhhhHHHHhhhHHHH-HHHHHHHccCCCcHHHHHHHHHHHHhHHhhccCC--cccc-c
Confidence 4555667788889999999999999999999999999 9999999999999999999999999987765322 1111 1
Q ss_pred HHHHHHHhcChhHHHHHHHHHHHHHHHhh-eeccc----CCCcchhhHHHHHHhhhhHHHHHHHHHHHHHHHhhcCCccc
Q 019718 135 VQEIWALATQPDFLIYVAATVSVVLALVL-HFEPR----CGQTNILVYLGICSLMGSLTVVSIKAIGIAIKLTLDGISQI 209 (336)
Q Consensus 135 ~~el~~~~~~~~fl~y~~~~~~~~~~li~-~~~~~----~g~~~~~~y~~isgllgg~tvl~~K~v~~~l~~~~~g~~~f 209 (336)
. .+. .+..... ++.-.+ ...++ .+......+. .....++. .+..-. ...+.+..
T Consensus 127 ---~------~G~-~~~l~a~--~~~a~~~~~~k~~~~~~~~~~~~~~~-~~~~~~~~-~l~~~~-------~~~~~~~~ 185 (260)
T TIGR00950 127 ---P------AGL-LLGLGSG--ISFALGTVLYKRLVKKEGPELLQFTG-WVLLLGAL-LLLPFA-------WFLGPNPQ 185 (260)
T ss_pred ---H------HHH-HHHHHHH--HHHHHHHHHHhHHhhcCCchHHHHHH-HHHHHHHH-HHHHHH-------HhcCCCCC
Confidence 0 011 1111111 111111 11121 1111112221 11111211 111111 11222212
Q ss_pred chhHHHH-HHHHHHHHHHHHHHHHHHhhccccccchhhhHHHHHHHHHHHHHHHHhcccCCCChhHHHHHHHHHHHHHHh
Q 019718 210 AYPQTWF-FLTVAAVCVVTQLNYLNKALDTFNAAIVSPVYYVMFTTLTIIASAIMFKDWSGQDVSGIASEICGFITVLSG 288 (336)
Q Consensus 210 ~~~~~y~-ll~~~v~~~~~Q~~~Ln~aL~~~~~~~v~P~~~v~~~~~~i~~G~i~f~E~~~~~~~~~~~~~~G~~~~i~G 288 (336)
.++..|. ++...+.+........++++++.++..+..+. ...|+.+.+.+.++++|. .++.+ ..|.++++.|
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~s~~~-~~~pv~~~ll~~~~~~E~--~~~~~----~~G~~li~~g 258 (260)
T TIGR00950 186 ALSLQWGALLYLGLIGTALAYFLWNKGLTLVDPSAASILA-LAEPLVALLLGLLILGET--LSLPQ----LIGGALIIAA 258 (260)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHH-HHHHHHHHHHHHHHhCCC--CCHHH----HHHHHHHHHh
Confidence 2344443 33344444444555678999998888877765 478888999999999994 44554 3555556665
Q ss_pred h
Q 019718 289 T 289 (336)
Q Consensus 289 V 289 (336)
+
T Consensus 259 ~ 259 (260)
T TIGR00950 259 V 259 (260)
T ss_pred c
Confidence 4
No 10
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=98.73 E-value=3.5e-06 Score=82.27 Aligned_cols=233 Identities=21% Similarity=0.271 Sum_probs=131.9
Q ss_pred ccchhhhHHHHH--HHHHHHHHHHHHHHhhcchhHhhhhhhhHHHHHHHHHHHHHhcccccccchhhHHHhhcceeEEEE
Q 019718 47 TYLLEPLWWAGM--VTMIVGEVANFVAYVYAPAVLVTPLGALSIIIRYAVLAHFMLKERLQKMGILGCITCIVGSVVIVI 124 (336)
Q Consensus 47 ~~~~~p~W~~G~--~~~~~g~~~~~~al~~ap~slV~Pl~a~~lv~~~~~la~~~l~e~~~~~~~~G~~li~~G~~lvv~ 124 (336)
+..++|.|.-=+ ++.+.|+.....||.+.+.+-+|=|.+.+++++ ++++.++||||.++.+++|+++|++|+++++.
T Consensus 73 ~~~~~~~w~y~lla~~Dv~aN~~~v~a~~yTsvtS~~lL~~~~i~~~-~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~ 151 (334)
T PF06027_consen 73 KVLKRPWWKYFLLALLDVEANYLVVLAYQYTSVTSVQLLDCTSIPFV-MILSFIFLKRRYSWFHILGVLICIAGVVLVVV 151 (334)
T ss_pred hhcchhHHHHHHHHHHHHHHHHHHHHHhhcccHhHHHhhhhhhhHHH-HHHHHHHHHhhhhHHHHHHHHHHHhhhhheee
Confidence 345566664333 336678888889999999999999999999999 99999999999999999999999999877765
Q ss_pred ecCCCCCCC-C-HHHHHHHhcChhHHHHHHHHHHHHHHHhhee-ccc-CCCcchhhHHHHHHhhhhHHHHHHHHHHHHHH
Q 019718 125 HAPQEHTPN-S-VQEIWALATQPDFLIYVAATVSVVLALVLHF-EPR-CGQTNILVYLGICSLMGSLTVVSIKAIGIAIK 200 (336)
Q Consensus 125 ~~~~~~~~~-t-~~el~~~~~~~~fl~y~~~~~~~~~~li~~~-~~~-~g~~~~~~y~~isgllgg~tvl~~K~v~~~l~ 200 (336)
.....++.. + .+.+.- . +.+....++.-++-+ .++ -++.+...+.+--|++|.+-.. ..... +
T Consensus 152 sD~~~~~~~~~~~~~i~G----D-----ll~l~~a~lya~~nV~~E~~v~~~~~~~~lg~~Glfg~ii~~-iq~~i--l- 218 (334)
T PF06027_consen 152 SDVLSGSDSSSGSNPILG----D-----LLALLGAILYAVSNVLEEKLVKKAPRVEFLGMLGLFGFIISG-IQLAI--L- 218 (334)
T ss_pred ecccccccCCCCCccchh----H-----HHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHH-HHHHh--e-
Confidence 432221110 1 111100 0 001111111111101 111 1122233344444444433211 11111 1
Q ss_pred HhhcCCccc-chhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhHHHHHHHHHHHHHHHHhcccCCCChhHHHHHH
Q 019718 201 LTLDGISQI-AYPQTWFFLTVAAVCVVTQLNYLNKALDTFNAAIVSPVYYVMFTTLTIIASAIMFKDWSGQDVSGIASEI 279 (336)
Q Consensus 201 ~~~~g~~~f-~~~~~y~ll~~~v~~~~~Q~~~Ln~aL~~~~~~~v~P~~~v~~~~~~i~~G~i~f~E~~~~~~~~~~~~~ 279 (336)
+ .++...+ -+++...+++....+...=-...+-.++..+|+.+.--. ..-+.-+++.+..+|++. .++ .+.
T Consensus 219 e-~~~i~~~~w~~~~~~~~v~~~~~lf~~y~l~p~~l~~ssAt~~nLsL-LTsd~~ali~~i~~f~~~--~~~----ly~ 290 (334)
T PF06027_consen 219 E-RSGIESIHWTSQVIGLLVGYALCLFLFYSLVPIVLRMSSATFFNLSL-LTSDFYALIIDIFFFGYK--FSW----LYI 290 (334)
T ss_pred e-hhhhhccCCChhhHHHHHHHHHHHHHHHHHHHHHHHhCccceeehHH-HHhhHHHHHHHHHhcCcc--ccH----HHH
Confidence 1 1111111 134444444444444333222345567777776544433 444555888899999984 333 366
Q ss_pred HHHHHHHHhhhhhccccCCCCC
Q 019718 280 CGFITVLSGTIILHATREHEQT 301 (336)
Q Consensus 280 ~G~~~~i~GV~lLs~~~~~~~~ 301 (336)
.|+++++.|+++....+++++.
T Consensus 291 ~af~lIiiG~vvy~~~~~~~~~ 312 (334)
T PF06027_consen 291 LAFALIIIGFVVYNLAESPEEE 312 (334)
T ss_pred HHHHHHHHHhheEEccCCcccc
Confidence 8888999999998876655443
No 11
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=98.70 E-value=9.4e-06 Score=77.40 Aligned_cols=260 Identities=14% Similarity=0.071 Sum_probs=141.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhHHhhhccCC---Ccc--C--------CCccccchhhh----HHHHHHHHHHHHHH
Q 019718 5 ENSKGLILAVASSAFIGSSFILKKKGLKRAGASG---TRA--G--------VGGYTYLLEPL----WWAGMVTMIVGEVA 67 (336)
Q Consensus 5 ~~~iGv~LAl~sa~~~a~G~vlqk~~~~~~~~~~---~~~--~--------~~~~~~~~~p~----W~~G~~~~~~g~~~ 67 (336)
+...|+.+.+++.++.+.+.+.-|.+..+.+... .|- + ...+.-.+++. ++.|.. +.....+
T Consensus 9 ~~~~~~~~~~la~~~~~~~~~~~K~~~~~~~~~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~ 87 (293)
T PRK10532 9 PVWLPILLLLIAMASIQSGASLAKSLFPLVGAPGVTALRLALGTLILIAIFKPWRLRFAKEQRLPLLFYGVS-LGGMNYL 87 (293)
T ss_pred ccchHHHHHHHHHHHHHhhHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhHHhccCCHHHHHHHHHHHHH-HHHHHHH
Confidence 3467889999999999999999998765433100 000 0 00001112222 355553 4566677
Q ss_pred HHHHHhhcchhHhhhhhhhHHHHHHHHHHHHHhcccccccchhhHHHhhcceeEEEEecCCCCCCCCHHHHHHHhcChhH
Q 019718 68 NFVAYVYAPAVLVTPLGALSIIIRYAVLAHFMLKERLQKMGILGCITCIVGSVVIVIHAPQEHTPNSVQEIWALATQPDF 147 (336)
Q Consensus 68 ~~~al~~ap~slV~Pl~a~~lv~~~~~la~~~l~e~~~~~~~~G~~li~~G~~lvv~~~~~~~~~~t~~el~~~~~~~~f 147 (336)
.+.++...|.+...-+.....++. .++++ ||.+ ++.+..+..+|+.+++..+...+.......++
T Consensus 88 ~~~al~~~~~~~a~~l~~t~Pi~~-~ll~~----~~~~--~~~~~~i~~~Gv~li~~~~~~~~~~~~~G~ll-------- 152 (293)
T PRK10532 88 FYLSIQTVPLGIAVALEFTGPLAV-ALFSS----RRPV--DFVWVVLAVLGLWFLLPLGQDVSHVDLTGAAL-------- 152 (293)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHH-HHHhc----CChH--HHHHHHHHHHHHheeeecCCCcccCChHHHHH--------
Confidence 888899999998777777777777 66653 5544 45667777888776653222111110011111
Q ss_pred HHHHHHHHHHHHHHhhe-ecccCCCc-chhhHHHHHHhhhhHHHHHHHHHHHHHHHhhcCCcccchhHHHH-HHHHHHHH
Q 019718 148 LIYVAATVSVVLALVLH-FEPRCGQT-NILVYLGICSLMGSLTVVSIKAIGIAIKLTLDGISQIAYPQTWF-FLTVAAVC 224 (336)
Q Consensus 148 l~y~~~~~~~~~~li~~-~~~~~g~~-~~~~y~~isgllgg~tvl~~K~v~~~l~~~~~g~~~f~~~~~y~-ll~~~v~~ 224 (336)
.....++.-.+. ..+|..++ .+... ....++++... .. +. . ..+.....++..+. ++...+.+
T Consensus 153 -----~l~aa~~~a~~~v~~r~~~~~~~~~~~-~~~~~~~~~~l-~~--~~--~---~~~~~~~~~~~~~~~~l~lgv~~ 218 (293)
T PRK10532 153 -----ALGAGACWAIYILSGQRAGAEHGPATV-AIGSLIAALIF-VP--IG--A---LQAGEALWHWSILPLGLAVAILS 218 (293)
T ss_pred -----HHHHHHHHHHHHHHHHHHhccCCchHH-HHHHHHHHHHH-HH--HH--H---HccCcccCCHHHHHHHHHHHHHH
Confidence 111111111111 11222111 11111 12222222111 10 11 0 11112223444443 24555666
Q ss_pred HHHHHHHHHHhhccccccchhhhHHHHHHHHHHHHHHHHhcccCCCChhHHHHHHHHHHHHHHhhhhhccccCCCCC
Q 019718 225 VVTQLNYLNKALDTFNAAIVSPVYYVMFTTLTIIASAIMFKDWSGQDVSGIASEICGFITVLSGTIILHATREHEQT 301 (336)
Q Consensus 225 ~~~Q~~~Ln~aL~~~~~~~v~P~~~v~~~~~~i~~G~i~f~E~~~~~~~~~~~~~~G~~~~i~GV~lLs~~~~~~~~ 301 (336)
++.+....|+++++.+++.+.+. ....|+++++.|.++++|.. ++.+ .+|.+++++|++..++.+.++++
T Consensus 219 t~~~~~l~~~~~~~~~a~~as~~-~~l~Pv~a~l~~~l~lgE~~--~~~~----~iG~~lIl~~~~~~~~~~~~~~~ 288 (293)
T PRK10532 219 TALPYSLEMIALTRLPTRTFGTL-MSMEPALAAVSGMIFLGETL--TLIQ----WLALGAIIAASMGSTLTIRREPK 288 (293)
T ss_pred HHHHHHHHHHHHHhcChhHHHHH-HHhHHHHHHHHHHHHhCCCC--cHHH----HHHHHHHHHHHHHHHhcCCCCCC
Confidence 77788888999999999876665 47788899999999999953 4543 45666777777777766555443
No 12
>PRK11689 aromatic amino acid exporter; Provisional
Probab=98.69 E-value=1.2e-05 Score=76.86 Aligned_cols=213 Identities=13% Similarity=0.083 Sum_probs=110.6
Q ss_pred HHHHHHHHHHHHHHhhc----chhHhhhhhhhHHHHHHHHHHHHHhcccccccchhhHHHhhcceeEEEEecCCCCCCCC
Q 019718 59 VTMIVGEVANFVAYVYA----PAVLVTPLGALSIIIRYAVLAHFMLKERLQKMGILGCITCIVGSVVIVIHAPQEHTPNS 134 (336)
Q Consensus 59 ~~~~~g~~~~~~al~~a----p~slV~Pl~a~~lv~~~~~la~~~l~e~~~~~~~~G~~li~~G~~lvv~~~~~~~~~~t 134 (336)
+.+.....+.+.++.++ |.+...-+..+..+++ .+++++++|||++++++.|+++..+|+.++...++ + .+
T Consensus 69 l~~~~~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~-~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~--~--~~ 143 (295)
T PRK11689 69 LLFVSYEICLALSLGYANTRRQAIEVGMVNYLWPSLT-ILFAVLFNGQKANWLLIPGLLLALAGVAWVLGGDN--G--LS 143 (295)
T ss_pred HHHHHHHHHHHHHHHHhhccccchHHHHHHHHhHHHH-HHHHHHHhcCCccHHHHHHHHHHHHhHhheecCCc--c--ch
Confidence 33334444555565543 5555566778889999 99999999999999999999999999877654221 1 01
Q ss_pred HHHHHHHhcChhHHHHHHHHHHHHHHHhh-eecccCCC-cchhhHHHHHHhhhhHHHHHHHHHHHHHHHhhcCCcccchh
Q 019718 135 VQEIWALATQPDFLIYVAATVSVVLALVL-HFEPRCGQ-TNILVYLGICSLMGSLTVVSIKAIGIAIKLTLDGISQIAYP 212 (336)
Q Consensus 135 ~~el~~~~~~~~fl~y~~~~~~~~~~li~-~~~~~~g~-~~~~~y~~isgllgg~tvl~~K~v~~~l~~~~~g~~~f~~~ 212 (336)
.+++.....+. ...........++.-.+ ...+|..+ .++..+.. ..++..... .... .+....-.++
T Consensus 144 ~~~~~~~~~~~-~~G~~~~l~aa~~~A~~~v~~k~~~~~~~~~~~~~---~~~~~~l~~----~~~~---~~~~~~~~~~ 212 (295)
T PRK11689 144 LAELINNIASN-PLSYGLAFIGAFIWAAYCNVTRKYARGKNGITLFF---ILTALALWI----KYFL---SPQPAMVFSL 212 (295)
T ss_pred hhhhhhccccC-hHHHHHHHHHHHHHHHHHHHHhhccCCCCchhHHH---HHHHHHHHH----HHHH---hcCccccCCH
Confidence 11110000000 01111111111111111 11222221 12222211 111111110 0001 1111111233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhHHHHHHHHHHHHHHHHhcccCCCChhHHHHHHHHHHHHHHhhhhh
Q 019718 213 QTWFFLTVAAVCVVTQLNYLNKALDTFNAAIVSPVYYVMFTTLTIIASAIMFKDWSGQDVSGIASEICGFITVLSGTIIL 292 (336)
Q Consensus 213 ~~y~ll~~~v~~~~~Q~~~Ln~aL~~~~~~~v~P~~~v~~~~~~i~~G~i~f~E~~~~~~~~~~~~~~G~~~~i~GV~lL 292 (336)
..+..++....+...-..+.|+++|+.+++.+.+. .-..|+++++.|.++++|.. ++. ...|.++++.|+++.
T Consensus 213 ~~~~~l~~~~~~t~~~~~l~~~al~~~~a~~~s~~-~~l~Pv~a~i~~~~~lgE~~--~~~----~~iG~~lI~~gv~~~ 285 (295)
T PRK11689 213 PAIIKLLLAAAAMGFGYAAWNVGILHGNMTLLATA-SYFTPVLSAALAALLLSTPL--SFS----FWQGVAMVTAGSLLC 285 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHH-HHhHHHHHHHHHHHHhCCCC--cHH----HHHHHHHHHHhHHHH
Confidence 33332222223344445567999999998866555 46788889999999999954 344 446777788887766
Q ss_pred cc
Q 019718 293 HA 294 (336)
Q Consensus 293 s~ 294 (336)
..
T Consensus 286 ~~ 287 (295)
T PRK11689 286 WL 287 (295)
T ss_pred hh
Confidence 43
No 13
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=98.69 E-value=2e-06 Score=81.86 Aligned_cols=212 Identities=10% Similarity=0.090 Sum_probs=122.1
Q ss_pred HHHHHHHHHHHHHHHHH-hhcchhHhhhhhhhHHHHHHHHHHHHHhcccccccchhhHHHhhcceeEEEEecCCCCCCCC
Q 019718 56 AGMVTMIVGEVANFVAY-VYAPAVLVTPLGALSIIIRYAVLAHFMLKERLQKMGILGCITCIVGSVVIVIHAPQEHTPNS 134 (336)
Q Consensus 56 ~G~~~~~~g~~~~~~al-~~ap~slV~Pl~a~~lv~~~~~la~~~l~e~~~~~~~~G~~li~~G~~lvv~~~~~~~~~~t 134 (336)
.|......+..+...+. ...|.....-+..+..+++ .+++.+ +|||++++++.|..+..+|+.++.. +.+.+...
T Consensus 74 ~g~~~~~~~~~~~~~~~~~~~~a~~a~~l~~~~Pl~~-~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~--~~~~~~~~ 149 (292)
T PRK11272 74 IGLLLLAVGNGMVTVAEHQNVPSGIAAVVVATVPLFT-LCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNS--GGNLSGNP 149 (292)
T ss_pred HHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHH-HHHHHH-hcccCchhHHHHHHHHHHhHHHHhc--Ccccccch
Confidence 45554455566777777 8888888899999999999 999975 7999999999999999999776532 11111111
Q ss_pred HHHHHHHhcChhHHHHHHHHH-HHHHHHhheecccCCCcchhhHHHHHHhhhhHHHHHHHHHHHHHHHhhcCCcccchhH
Q 019718 135 VQEIWALATQPDFLIYVAATV-SVVLALVLHFEPRCGQTNILVYLGICSLMGSLTVVSIKAIGIAIKLTLDGISQIAYPQ 213 (336)
Q Consensus 135 ~~el~~~~~~~~fl~y~~~~~-~~~~~li~~~~~~~g~~~~~~y~~isgllgg~tvl~~K~v~~~l~~~~~g~~~f~~~~ 213 (336)
..+++. .... ...... ...+|..+++........-..++..... ... .. ........++.
T Consensus 150 ~G~l~~-----------l~a~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~--~~~~~~~~~~~ 210 (292)
T PRK11272 150 WGAILI-----------LIASASWAFGS--VWSSRLPLPVGMMAGAAEMLAAGVVLLI---ASL-LS--GERLTALPTLS 210 (292)
T ss_pred HHHHHH-----------HHHHHHHHHHH--HHHHhcCCCcchHHHHHHHHHHHHHHHH---HHH-Hc--CCcccccCCHH
Confidence 111111 1111 011111 1223332222211111111112111111 000 10 01111222334
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHhhccccccchhhhHHHHHHHHHHHHHHHHhcccCCCChhHHHHHHHHHHHHHHhhhhh
Q 019718 214 TWF-FLTVAAVCVVTQLNYLNKALDTFNAAIVSPVYYVMFTTLTIIASAIMFKDWSGQDVSGIASEICGFITVLSGTIIL 292 (336)
Q Consensus 214 ~y~-ll~~~v~~~~~Q~~~Ln~aL~~~~~~~v~P~~~v~~~~~~i~~G~i~f~E~~~~~~~~~~~~~~G~~~~i~GV~lL 292 (336)
.|. ++...+.+........+.++++.+++.+... ....|+.+.+.|.++++|. .++. ...|.++++.|++++
T Consensus 211 ~~~~i~~l~i~~s~~~~~l~~~~~~~~~~~~~s~~-~~l~Pi~a~i~~~~~l~E~--~t~~----~iiG~~lIi~gv~~~ 283 (292)
T PRK11272 211 GFLALGYLAVFGSIIAISAYMYLLRNVRPALATSY-AYVNPVVAVLLGTGLGGET--LSPI----EWLALGVIVFAVVLV 283 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHH-HHHHHHHHHHHHHHHcCCC--CcHH----HHHHHHHHHHHHHHH
Confidence 443 3333444555666788899999888776655 5778889999999999995 3444 357778899999998
Q ss_pred ccccC
Q 019718 293 HATRE 297 (336)
Q Consensus 293 s~~~~ 297 (336)
+.++.
T Consensus 284 ~~~~~ 288 (292)
T PRK11272 284 TLGKY 288 (292)
T ss_pred HHHHh
Confidence 76544
No 14
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=98.60 E-value=2.3e-06 Score=81.63 Aligned_cols=227 Identities=15% Similarity=0.146 Sum_probs=122.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcchhHhhhhhhhHHHHHHHHHHHHHhcccccccchhhHHHhhcceeEEEEecCCCCCC
Q 019718 53 LWWAGMVTMIVGEVANFVAYVYAPAVLVTPLGALSIIIRYAVLAHFMLKERLQKMGILGCITCIVGSVVIVIHAPQEHTP 132 (336)
Q Consensus 53 ~W~~G~~~~~~g~~~~~~al~~ap~slV~Pl~a~~lv~~~~~la~~~l~e~~~~~~~~G~~li~~G~~lvv~~~~~~~~~ 132 (336)
....|+. ..+...++..++.+.+.+..+=+.+...+++ .+++.+++|||++++.+.|.+++++|+.+.. ..+.+.
T Consensus 68 ~~~~g~~-~~~~~~~~~~~l~~~s~s~~~li~~~~Pv~~-~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~---~~~~~~ 142 (302)
T TIGR00817 68 LLPVAIV-HTIGHVTSNVSLSKVAVSFTHTIKAMEPFFS-VVLSAFFLGQEFPSTLWLSLLPIVGGVALAS---DTELSF 142 (302)
T ss_pred HHHHHHH-HHHHHHHHHHHHHhccHHHHHHHHhcchHHH-HHHHHHHhCCCCcHHHHHHHHHHHHHHhhhc---CCcccc
Confidence 3345555 4677789999999999999999999999999 9999999999999999999999999986532 222111
Q ss_pred CCHHHHHHHhcChhHHHHHHHHHHHHHHHhh--eecc--cCCCcchhhHHHHHHhhh-hHHHHHHHHHHHHHHHhhcCCc
Q 019718 133 NSVQEIWALATQPDFLIYVAATVSVVLALVL--HFEP--RCGQTNILVYLGICSLMG-SLTVVSIKAIGIAIKLTLDGIS 207 (336)
Q Consensus 133 ~t~~el~~~~~~~~fl~y~~~~~~~~~~li~--~~~~--~~g~~~~~~y~~isgllg-g~tvl~~K~v~~~l~~~~~g~~ 207 (336)
....+++. +.......+..++ +..+ +.+..+...|....|.+. ...............+..+...
T Consensus 143 ~~~G~~~~----------l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~ 212 (302)
T TIGR00817 143 NWAGFLSA----------MISNITFVSRNIFSKKAMTIKSLDKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAIS 212 (302)
T ss_pred cHHHHHHH----------HHHHHHHHHHHHHHHHhhccCCCCcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhc
Confidence 11111111 0000001111110 1111 222223334433333211 1111111100000000000000
Q ss_pred ccchhHHHH-HHHHHHHHHHHHHHHHHHhhccccccchhhhHHHHHHHHHHHHHHHHhcccCCCChhHHHHHHHHHHHHH
Q 019718 208 QIAYPQTWF-FLTVAAVCVVTQLNYLNKALDTFNAAIVSPVYYVMFTTLTIIASAIMFKDWSGQDVSGIASEICGFITVL 286 (336)
Q Consensus 208 ~f~~~~~y~-ll~~~v~~~~~Q~~~Ln~aL~~~~~~~v~P~~~v~~~~~~i~~G~i~f~E~~~~~~~~~~~~~~G~~~~i 286 (336)
.......|. .+.....+.......-+.++++-+++...-. ....++++++.|.++++|. .++. -.+|.++++
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~-~~l~pv~~~~~~~~~lge~--lt~~----~~~G~~lil 285 (302)
T TIGR00817 213 GVNVTKIYTVSLVAAMGFFHFYQQVAFMLLGRVSPLTHSVG-NCMKRVVVIVVSILFFGTK--ISPQ----QVFGTGIAI 285 (302)
T ss_pred ccCchHHHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHH-hhhhhhheeeeehhhcCCC--Cchh----HHHHHHHHH
Confidence 001111232 2222222322222233357888877664444 6777888999999999995 3444 346777889
Q ss_pred HhhhhhccccCCCCC
Q 019718 287 SGTIILHATREHEQT 301 (336)
Q Consensus 287 ~GV~lLs~~~~~~~~ 301 (336)
.|+++-++.|.++++
T Consensus 286 ~Gv~l~~~~k~~~~~ 300 (302)
T TIGR00817 286 AGVFLYSRVKAQKPK 300 (302)
T ss_pred HHHHHHHHHhccCcC
Confidence 999998877654433
No 15
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=98.49 E-value=7.6e-07 Score=73.60 Aligned_cols=99 Identities=15% Similarity=0.182 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHHHHHhHHhhhccCCCccCCCccccchhhhHHHHH--HHHHHHHHHHHHHHhhcchhHhhhhhhhHHHHH
Q 019718 14 VASSAFIGSSFILKKKGLKRAGASGTRAGVGGYTYLLEPLWWAGM--VTMIVGEVANFVAYVYAPAVLVTPLGALSIIIR 91 (336)
Q Consensus 14 l~sa~~~a~G~vlqk~~~~~~~~~~~~~~~~~~~~~~~p~W~~G~--~~~~~g~~~~~~al~~ap~slV~Pl~a~~lv~~ 91 (336)
+.|.++-..|.+..|++.+..+.. . ..+++.++.+. ..+.++..+...++...|++...|+.+++.+++
T Consensus 7 ~~ai~~ev~g~~~lK~s~~~~~~~-------~--~~~~~l~~~~~~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~ 77 (111)
T PRK15051 7 VFASLLSVAGQLCQKQATRPVAIG-------K--RRKHIVLWLGLALACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWV 77 (111)
T ss_pred HHHHHHHHHHHHHHHHHhccCCcc-------h--hhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHH
Confidence 445566667888888874433210 0 11234445555 557888999999999999999999999999999
Q ss_pred HHHHHHHHhcccccccchhhHHHhhcceeEE
Q 019718 92 YAVLAHFMLKERLQKMGILGCITCIVGSVVI 122 (336)
Q Consensus 92 ~~~la~~~l~e~~~~~~~~G~~li~~G~~lv 122 (336)
.+++.+++|||++.+++.|+.++++|++++
T Consensus 78 -~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i 107 (111)
T PRK15051 78 -TLAAVKLWHEPVSPRHWCGVAFIIGGIVIL 107 (111)
T ss_pred -HHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999997654
No 16
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=98.46 E-value=4.1e-05 Score=70.82 Aligned_cols=212 Identities=16% Similarity=0.223 Sum_probs=121.9
Q ss_pred HHHHHHHHHHHHHHHHHhhcchhHhhhhhhhHHHHHHHHHHH-HHhcccccccchhhHHHhhcceeEEEEecCCCCCCCC
Q 019718 56 AGMVTMIVGEVANFVAYVYAPAVLVTPLGALSIIIRYAVLAH-FMLKERLQKMGILGCITCIVGSVVIVIHAPQEHTPNS 134 (336)
Q Consensus 56 ~G~~~~~~g~~~~~~al~~ap~slV~Pl~a~~lv~~~~~la~-~~l~e~~~~~~~~G~~li~~G~~lvv~~~~~~~~~~t 134 (336)
.|......+..+.+.++...|.+..+++.....+++ .+++. +++|||++++++.|..+...|+.++...+..+.....
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~-~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~~~~~~~ 153 (292)
T COG0697 75 LALLGLALPFLLLFLALKYTSASVASLIIGLLPLFT-ALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGGGGILSL 153 (292)
T ss_pred HHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHH-HHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCcchhHHH
Confidence 444556677789999999999999999999999999 99998 7779999999999999999998776443332221100
Q ss_pred HHHHHHHhcChhHHHHHHHHHHHHHHHhheecccCCCcchhhHHHHHHhhhhHHHHHHHHHHHHHHHhhcCCcccchhHH
Q 019718 135 VQEIWALATQPDFLIYVAATVSVVLALVLHFEPRCGQTNILVYLGICSLMGSLTVVSIKAIGIAIKLTLDGISQIAYPQT 214 (336)
Q Consensus 135 ~~el~~~~~~~~fl~y~~~~~~~~~~li~~~~~~~g~~~~~~y~~isgllgg~tvl~~K~v~~~l~~~~~g~~~f~~~~~ 214 (336)
..++ +...... ...+.....++..+.+....... ......-.... .......+....+..
T Consensus 154 ~g~~-----------~~l~a~~-~~a~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~--~~~~~~~~~~~~~~~ 213 (292)
T COG0697 154 LGLL-----------LALAAAL-LWALYTALVKRLSRLGPVTLALL------LQLLLALLLLL--LFFLSGFGAPILSRA 213 (292)
T ss_pred HHHH-----------HHHHHHH-HHHHHHHHHHHhcCCChHHHHHH------HHHHHHHHHHH--HHHhccccccCCHHH
Confidence 1111 1111111 11110111121111111111110 00000000000 000111112222333
Q ss_pred HH-HHHHHHHHHHHHHHHHHHhhccccccchhhhHHHHHHHHHHHHHHHHhcccCCCChhHHHHHHHHHHHHHHhhhhhc
Q 019718 215 WF-FLTVAAVCVVTQLNYLNKALDTFNAAIVSPVYYVMFTTLTIIASAIMFKDWSGQDVSGIASEICGFITVLSGTIILH 293 (336)
Q Consensus 215 y~-ll~~~v~~~~~Q~~~Ln~aL~~~~~~~v~P~~~v~~~~~~i~~G~i~f~E~~~~~~~~~~~~~~G~~~~i~GV~lLs 293 (336)
|. +....+.+...-....+++++..++..+.|.. ...++.+++.+.++++|.- +..++ .|.++++.|+++..
T Consensus 214 ~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~l~~~e~~--~~~~~----~G~~li~~g~~l~~ 286 (292)
T COG0697 214 WLLLLYLGVFSTGLAYLLWYYALRLLGASLVALLS-LLEPVFAALLGVLLLGEPL--SPAQL----LGAALVVLGVLLAS 286 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHH-HHHHHHHHHHHHHHhCCCC--cHHHH----HHHHHHHHHHHHHh
Confidence 32 33333333435667788999999998877776 6777778889999999954 34433 45578888888877
Q ss_pred cc
Q 019718 294 AT 295 (336)
Q Consensus 294 ~~ 295 (336)
.+
T Consensus 287 ~~ 288 (292)
T COG0697 287 LR 288 (292)
T ss_pred cc
Confidence 66
No 17
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=98.42 E-value=4.1e-07 Score=75.39 Aligned_cols=101 Identities=18% Similarity=0.197 Sum_probs=79.5
Q ss_pred HHHHHHHHhHHhhhccCCCc--cCCCccccchhhhHHHHHHHHHHHHHHHHHHHhhcchhHhhhhh-hhHHHHHHHHHHH
Q 019718 21 GSSFILKKKGLKRAGASGTR--AGVGGYTYLLEPLWWAGMVTMIVGEVANFVAYVYAPAVLVTPLG-ALSIIIRYAVLAH 97 (336)
Q Consensus 21 a~G~vlqk~~~~~~~~~~~~--~~~~~~~~~~~p~W~~G~~~~~~g~~~~~~al~~ap~slV~Pl~-a~~lv~~~~~la~ 97 (336)
+...-+-||+.+..++.... .-.+.+..++||+.++++++...|++..+..++-+|+|+..|+. +++++++ ++.++
T Consensus 9 G~Tnpfik~g~~~~~~~~~~~~~~~~~~~Ll~n~~y~ipf~lNq~GSv~f~~~L~~~dlSlavPi~Nsl~fvfT-~l~g~ 87 (113)
T PF10639_consen 9 GCTNPFIKRGSSGLEKVKASLQLLQEIKFLLLNPKYIIPFLLNQSGSVLFFLLLGSADLSLAVPIANSLAFVFT-ALTGW 87 (113)
T ss_pred cCchHHHHHHHhhcCCccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcCCceeeehHHhHHHHHHH-HHHHH
Confidence 33445677765544332111 11234578999999999999999999999999999999999995 9999999 99886
Q ss_pred HHhcccccccchhhHHHhhcceeEE
Q 019718 98 FMLKERLQKMGILGCITCIVGSVVI 122 (336)
Q Consensus 98 ~~l~e~~~~~~~~G~~li~~G~~lv 122 (336)
++-+|..+++.+.|+.+++.|+.+.
T Consensus 88 ~lge~~~~~~~~~G~~Li~~Gv~Lc 112 (113)
T PF10639_consen 88 LLGEEVISRRTWLGMALILAGVALC 112 (113)
T ss_pred HhcCcccchhHHHHHHHHHcCeeee
Confidence 6666666777899999999998765
No 18
>COG2510 Predicted membrane protein [Function unknown]
Probab=98.41 E-value=1.8e-06 Score=72.73 Aligned_cols=112 Identities=24% Similarity=0.345 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHhhhccCC---Ccc--------------CC-CccccchhhhHH----HHHHHHHHHHHH
Q 019718 10 LILAVASSAFIGSSFILKKKGLKRAGASG---TRA--------------GV-GGYTYLLEPLWW----AGMVTMIVGEVA 67 (336)
Q Consensus 10 v~LAl~sa~~~a~G~vlqk~~~~~~~~~~---~~~--------------~~-~~~~~~~~p~W~----~G~~~~~~g~~~ 67 (336)
.+.|+.||++.++..++-|-+.+..+..- .|. |. +...-...+.|. .| +.-.++-.+
T Consensus 5 ~~~ALLsA~fa~L~~iF~KIGl~~vdp~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~~~k~~lflilSG-la~glswl~ 83 (140)
T COG2510 5 IIYALLSALFAGLTPIFAKIGLEGVDPDFATTIRTIVILIFLLIVLLVTGNWQAGGEIGPKSWLFLILSG-LAGGLSWLL 83 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccCccHHHHHHHHHHHHHHHHHHHhcCceecccccCcceehhhhHHH-HHHHHHHHH
Confidence 46788899999999999888866433210 000 00 000112233332 33 445577778
Q ss_pred HHHHHhhcchhHhhhhhhhHHHHHHHHHHHHHhcccccccchhhHHHhhcceeEEE
Q 019718 68 NFVAYVYAPAVLVTPLGALSIIIRYAVLAHFMLKERLQKMGILGCITCIVGSVVIV 123 (336)
Q Consensus 68 ~~~al~~ap~slV~Pl~a~~lv~~~~~la~~~l~e~~~~~~~~G~~li~~G~~lvv 123 (336)
.+-|+.-++.+.|.|+-..+.++. .+++..+||||++..+|+|+.++++|++++.
T Consensus 84 Yf~ALk~G~as~VvPldk~svvl~-~lls~lfL~E~ls~~~~iG~~LI~~Gailvs 138 (140)
T COG2510 84 YFRALKKGKASRVVPLDKTSVVLA-VLLSILFLGERLSLPTWIGIVLIVIGAILVS 138 (140)
T ss_pred HHHHHhcCCcceEEEcccccHHHH-HHHHHHHhcCCCCHHHHHHHHHHHhCeeeEe
Confidence 999999999999999999999999 9999999999999999999999999988764
No 19
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=98.29 E-value=2.1e-06 Score=70.57 Aligned_cols=66 Identities=32% Similarity=0.474 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHHHHhhcchhHhhhhhhhHHHHHHHHHHHHHhcccccccchhhHHHhhcceeEEEE
Q 019718 57 GMVTMIVGEVANFVAYVYAPAVLVTPLGALSIIIRYAVLAHFMLKERLQKMGILGCITCIVGSVVIVI 124 (336)
Q Consensus 57 G~~~~~~g~~~~~~al~~ap~slV~Pl~a~~lv~~~~~la~~~l~e~~~~~~~~G~~li~~G~~lvv~ 124 (336)
|......+..+.+.|+.++| ..+.|+.+++.+++ .+++.+++|||+++++|.|++++.+|++++..
T Consensus 41 g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~-~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~~ 106 (113)
T PF13536_consen 41 GLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFT-ALLSWLFFKERLSPRRWLAILLILIGVILIAW 106 (113)
T ss_pred HHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHH-HHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhh
Confidence 44445577889999999999 59999999999999 99999999999999999999999999877654
No 20
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=98.13 E-value=0.0006 Score=65.34 Aligned_cols=222 Identities=14% Similarity=0.184 Sum_probs=128.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhcchhHhhhhhhhHHHHHHHHHHHHHhcccccccchhhHHHhhcceeEEEEecCCCCC
Q 019718 52 PLWWAGMVTMIVGEVANFVAYVYAPAVLVTPLGALSIIIRYAVLAHFMLKERLQKMGILGCITCIVGSVVIVIHAPQEHT 131 (336)
Q Consensus 52 p~W~~G~~~~~~g~~~~~~al~~ap~slV~Pl~a~~lv~~~~~la~~~l~e~~~~~~~~G~~li~~G~~lvv~~~~~~~~ 131 (336)
+.+..+ .+..++..++-.|+.+.|...-+=+-+..++++ ++++.+++|+|.+++++.+++++++|+++......++++
T Consensus 66 ~~~~~~-~~~~~~~~~~~~al~~i~~p~~~~~ks~~~i~v-mi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~ 143 (303)
T PF08449_consen 66 KYAILS-FLFFLASVLSNAALKYISYPTQIVFKSSKPIPV-MILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSS 143 (303)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHhCChHHHHHHhhhHHHHH-HHHHHHhcCccccHHHHHHHHHHHhhHheeeeccccccc
Confidence 334444 455578889999999999999999999999999 999999999999999999999999999888776554443
Q ss_pred CCCHHHHHHHhcChhHHHHHHHHHHHHHH-H--hh--eecccCCCc--chhhHHHHHHhhh-hHHHHHHHHHHHHHHHhh
Q 019718 132 PNSVQEIWALATQPDFLIYVAATVSVVLA-L--VL--HFEPRCGQT--NILVYLGICSLMG-SLTVVSIKAIGIAIKLTL 203 (336)
Q Consensus 132 ~~t~~el~~~~~~~~fl~y~~~~~~~~~~-l--i~--~~~~~~g~~--~~~~y~~isgllg-g~tvl~~K~v~~~l~~~~ 203 (336)
..+.++.. +.. .++.+....++- . .+ +..++++.. ..+.|--.-++.. .......+ -.+ .....
T Consensus 144 ~~~~~~~~-----~~~-G~~ll~~sl~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~-~~~-~~~~~ 215 (303)
T PF08449_consen 144 SSNSSSFS-----SAL-GIILLLLSLLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLP-TGE-FRSAI 215 (303)
T ss_pred cccccccc-----chh-HHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHH-hhH-hhHHH
Confidence 32221100 000 111111111110 0 11 111233322 2334433333222 11122211 111 11000
Q ss_pred cCCcccchhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhHHHHHHHHHHHHHHHHhcccCCCChhHHHHHHHHHH
Q 019718 204 DGISQIAYPQTWFFLTVAAVCVVTQLNYLNKALDTFNAAIVSPVYYVMFTTLTIIASAIMFKDWSGQDVSGIASEICGFI 283 (336)
Q Consensus 204 ~g~~~f~~~~~y~ll~~~v~~~~~Q~~~Ln~aL~~~~~~~v~P~~~v~~~~~~i~~G~i~f~E~~~~~~~~~~~~~~G~~ 283 (336)
+-...||..+..++....+...-+.+.+.-.+++++....=+. ..=-..+++.+.++|++ +.++.+|.+. +
T Consensus 216 --~f~~~~p~~~~~l~~~s~~~~~g~~~i~~~~~~~~al~~t~v~-t~Rk~~sillS~~~f~~--~~~~~~~~G~----~ 286 (303)
T PF08449_consen 216 --RFISAHPSVLLYLLLFSLTGALGQFFIFYLIKKFSALTTTIVT-TLRKFLSILLSVIIFGH--PLSPLQWIGI----V 286 (303)
T ss_pred --HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhHH-HHHHHHHHHHHHHhcCC--cCChHHHHHH----H
Confidence 0123677776665555555444455666777888876654444 44466788889999987 5667776544 4
Q ss_pred HHHHhhhhh
Q 019718 284 TVLSGTIIL 292 (336)
Q Consensus 284 ~~i~GV~lL 292 (336)
+++.|+.+=
T Consensus 287 lv~~g~~~~ 295 (303)
T PF08449_consen 287 LVFAGIFLY 295 (303)
T ss_pred HhHHHHHHH
Confidence 455565543
No 21
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=98.11 E-value=0.00015 Score=68.85 Aligned_cols=213 Identities=10% Similarity=0.211 Sum_probs=125.5
Q ss_pred hhHHHHHHH---HHHHHHHHHHHHhhcchhHhhhhh-hhHHHHHHHHHHHHHhcccccccchh----hHHHhhcceeEEE
Q 019718 52 PLWWAGMVT---MIVGEVANFVAYVYAPAVLVTPLG-ALSIIIRYAVLAHFMLKERLQKMGIL----GCITCIVGSVVIV 123 (336)
Q Consensus 52 p~W~~G~~~---~~~g~~~~~~al~~ap~slV~Pl~-a~~lv~~~~~la~~~l~e~~~~~~~~----G~~li~~G~~lvv 123 (336)
..|+.+++. -.+|+++|+.++.....|.-.|++ +.+++.| .+.+.++++|--+..+++ +.+++++|+.+..
T Consensus 43 ~~~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~-sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts 121 (269)
T PF06800_consen 43 TSFIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGT-SLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTS 121 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHH-HHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhc
Confidence 567777754 569999999999999999999998 8999999 999999999988877764 8889999987765
Q ss_pred EecCCCCCCCCHHHHHHHhcChhHHHHHHHHHHHHHHHhheecccCCCcchhhHHHHHHhhhhHHHHHHHHHHHHHHHh-
Q 019718 124 IHAPQEHTPNSVQEIWALATQPDFLIYVAATVSVVLALVLHFEPRCGQTNILVYLGICSLMGSLTVVSIKAIGIAIKLT- 202 (336)
Q Consensus 124 ~~~~~~~~~~t~~el~~~~~~~~fl~y~~~~~~~~~~li~~~~~~~g~~~~~~y~~isgllgg~tvl~~K~v~~~l~~~- 202 (336)
....++++..+..+..+ ..+ +..+ ..+.+..|..-||..+-+ +.+.++-.+++..+...
T Consensus 122 ~~~~~~~~~~~~~~~~k-----gi~-~Ll~--stigy~~Y~~~~~~~~~~------------~~~~~lPqaiGm~i~a~i 181 (269)
T PF06800_consen 122 YQDKKSDKSSSKSNMKK-----GIL-ALLI--STIGYWIYSVIPKAFHVS------------GWSAFLPQAIGMLIGAFI 181 (269)
T ss_pred cccccccccccccchhh-----HHH-HHHH--HHHHHHHHHHHHHhcCCC------------hhHhHHHHHHHHHHHHHH
Confidence 54444443222222222 111 1111 122333344446553332 22222223322221110
Q ss_pred ---hcCCcccchhHHHHHHHHHHHHHHHH-HHHHHHhhccccccchhhhHHHHHHHHHHHHHHHHhcccCCCChhHHHHH
Q 019718 203 ---LDGISQIAYPQTWFFLTVAAVCVVTQ-LNYLNKALDTFNAAIVSPVYYVMFTTLTIIASAIMFKDWSGQDVSGIASE 278 (336)
Q Consensus 203 ---~~g~~~f~~~~~y~ll~~~v~~~~~Q-~~~Ln~aL~~~~~~~v~P~~~v~~~~~~i~~G~i~f~E~~~~~~~~~~~~ 278 (336)
.. .+.+.+..+|.=++..+.=.+.= .+++... .--...-.|+-|.. .+.+.++|+.+++|.. +..++...
T Consensus 182 ~~~~~-~~~~~~k~~~~nil~G~~w~ignl~~~is~~--~~G~a~af~lSQ~~-vvIStlgGI~il~E~K--t~ke~~~~ 255 (269)
T PF06800_consen 182 FNLFS-KKPFFEKKSWKNILTGLIWGIGNLFYLISAQ--KNGVATAFTLSQLG-VVISTLGGIFILKEKK--TKKEMIYT 255 (269)
T ss_pred Hhhcc-cccccccchHHhhHHHHHHHHHHHHHHHhHH--hccchhhhhHHhHH-HHHHHhhhheEEEecC--chhhHHHH
Confidence 01 22223333333222222111110 1122221 22223456676666 5568889999999976 46889999
Q ss_pred HHHHHHHHHhhhh
Q 019718 279 ICGFITVLSGTII 291 (336)
Q Consensus 279 ~~G~~~~i~GV~l 291 (336)
.+|+++++.|.++
T Consensus 256 ~~G~~Liv~G~il 268 (269)
T PF06800_consen 256 LIGLILIVIGAIL 268 (269)
T ss_pred HHHHHHHHHhhhc
Confidence 9999999988775
No 22
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=98.03 E-value=0.0004 Score=68.19 Aligned_cols=70 Identities=14% Similarity=0.190 Sum_probs=59.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhcchhHhhhhhhhHHHHHHHHHHHHHhcccccccchhhHHHhhcceeEEE
Q 019718 52 PLWWAGMVTMIVGEVANFVAYVYAPAVLVTPLGALSIIIRYAVLAHFMLKERLQKMGILGCITCIVGSVVIV 123 (336)
Q Consensus 52 p~W~~G~~~~~~g~~~~~~al~~ap~slV~Pl~a~~lv~~~~~la~~~l~e~~~~~~~~G~~li~~G~~lvv 123 (336)
+....|+.-.. +..+...++.+.+.+..+=+-+.+.+++ ++++++++|||++++.+.+++++++|+.+..
T Consensus 116 ~llp~gl~~~~-~~~~~~~sl~~~svs~~~iika~~Pvft-~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~ 185 (350)
T PTZ00343 116 NFLPQGLCHLF-VHFGAVISMGLGAVSFTHVVKAAEPVFT-ALLSILFLKQFLNLYAYLSLIPIVGGVALAS 185 (350)
T ss_pred HHHHHHHHHHH-HHHHHHHHHhhccHHHHHHHHHhhHHHH-HHHHHHHhCCCccHHHHHHHHHHHHHHHhee
Confidence 34444544432 3556669999999999999999999999 9999999999999999999999999988764
No 23
>PRK13499 rhamnose-proton symporter; Provisional
Probab=97.98 E-value=0.00019 Score=70.42 Aligned_cols=287 Identities=11% Similarity=0.077 Sum_probs=153.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhHHhhhccC-------------CC----ccC-CCccccch---hhhHHHHHH---H
Q 019718 5 ENSKGLILAVASSAFIGSSFILKKKGLKRAGAS-------------GT----RAG-VGGYTYLL---EPLWWAGMV---T 60 (336)
Q Consensus 5 ~~~iGv~LAl~sa~~~a~G~vlqk~~~~~~~~~-------------~~----~~~-~~~~~~~~---~p~W~~G~~---~ 60 (336)
+..+|++..+++.++.+.=.+=||| .++=+-+ .+ ..+ .+..++++ ...|..+++ +
T Consensus 4 ~~~~G~~~~~i~~~~~GS~~~p~K~-~k~w~wE~~W~v~gi~~wl~~~~~~g~~~~~~f~~~~~~~~~~~~~~~~l~G~~ 82 (345)
T PRK13499 4 AIILGIIWHLIGGASSGSFYAPFKK-VKKWSWETMWSVGGIFSWLILPWLIAALLLPDFWAYYSSFSGSTLLPVFLFGAL 82 (345)
T ss_pred hhHHHHHHHHHHHHHhhcccccccc-cCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhcCHHHHHHHHHHHHH
Confidence 6778999999999999988999998 3221100 00 000 01122222 345666653 3
Q ss_pred HHHHHHHHHHHHhhcchhHhhhhh-hhHHHHHHHHHHHHHhcccc---cc----cchhhHHHhhcceeEEEEecCCCCCC
Q 019718 61 MIVGEVANFVAYVYAPAVLVTPLG-ALSIIIRYAVLAHFMLKERL---QK----MGILGCITCIVGSVVIVIHAPQEHTP 132 (336)
Q Consensus 61 ~~~g~~~~~~al~~ap~slV~Pl~-a~~lv~~~~~la~~~l~e~~---~~----~~~~G~~li~~G~~lvv~~~~~~~~~ 132 (336)
-.+|++.++.+..+...|+-.|++ +++++.+ .++..++++|=- +. ....|++++++|+++....+...++.
T Consensus 83 W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~g-tL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~Ag~~k~~~ 161 (345)
T PRK13499 83 WGIGGITYGLTMRYLGMSLGIGIAIGITLIVG-TLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGRAGQLKERK 161 (345)
T ss_pred HHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHH-HHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHhhhhcccc
Confidence 558999999999999999999997 5788888 999999998633 32 24579999999988776544333332
Q ss_pred CCHHHHHHHhcChhHHHHHHHHHHHHHHHhh--e---ecc----cCCCcch-hhHHHHHH-hhhhHHHHHHHHHHHHHH-
Q 019718 133 NSVQEIWALATQPDFLIYVAATVSVVLALVL--H---FEP----RCGQTNI-LVYLGICS-LMGSLTVVSIKAIGIAIK- 200 (336)
Q Consensus 133 ~t~~el~~~~~~~~fl~y~~~~~~~~~~li~--~---~~~----~~g~~~~-~~y~~isg-llgg~tvl~~K~v~~~l~- 200 (336)
.+.||-.+.-.+.. +....+..+......+ - .-+ ..|.... ......++ ++|++..-+.=+.-.+-+
T Consensus 162 ~~~~~~~~~~~~KG-i~ialisgi~~~~f~~~~~~~~~~~~~a~~~g~~~~~~~lp~~~~~~~G~~~~n~~~~~~~~~k~ 240 (345)
T PRK13499 162 MGIKKAEEFNLKKG-LILAVMSGIFSACFSFAMDAGKPMHEAAAALGVDPLYAALPSYVVIMGGGAITNLGFCFIRLAKN 240 (345)
T ss_pred cccccccccchHhH-HHHHHHHHHHHHHHHHHHhhccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 22110000000111 2222222221111100 0 001 1121111 11112222 233332221111100001
Q ss_pred HhhcCCcccch-----hHHHHHHHHHHHHHHHHHHHHHHhhc-ccc--ccchhhhHHHHHHHHHHHHHHHHhcccCCCCh
Q 019718 201 LTLDGISQIAY-----PQTWFFLTVAAVCVVTQLNYLNKALD-TFN--AAIVSPVYYVMFTTLTIIASAIMFKDWSGQDV 272 (336)
Q Consensus 201 ~~~~g~~~f~~-----~~~y~ll~~~v~~~~~Q~~~Ln~aL~-~~~--~~~v~P~~~v~~~~~~i~~G~i~f~E~~~~~~ 272 (336)
+..+....+.. +..|++....-+.=..|..+.--+-+ ... +....++.+-...+.+.+.|+ +++|++..+.
T Consensus 241 ~~~~~~~~~~~~~~~~~~n~l~~~l~G~~W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi-~lkE~K~a~~ 319 (345)
T PRK13499 241 KDLSLKADFSLAKPLLITNVLLSALAGVMWYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGL-VLKEWKGASR 319 (345)
T ss_pred CCcccchhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhhh-hhhhccCCCc
Confidence 01100111222 34455444444444445333332222 111 122345555556677888888 5999999999
Q ss_pred hHHHHHHHHHHHHHHhhhhhccc
Q 019718 273 SGIASEICGFITVLSGTIILHAT 295 (336)
Q Consensus 273 ~~~~~~~~G~~~~i~GV~lLs~~ 295 (336)
.+.....+|+++++.|.+++.-.
T Consensus 320 k~~~~l~~G~vliI~g~~lig~~ 342 (345)
T PRK13499 320 RPVRVLSLGCVVIILAANIVGLG 342 (345)
T ss_pred cchhHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999988754
No 24
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=97.96 E-value=0.00098 Score=61.96 Aligned_cols=62 Identities=15% Similarity=0.157 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHhhcchhHhhhhhhhHHHHHHHHHHHHHhcccccccchhhHHHhhcceeEEE
Q 019718 61 MIVGEVANFVAYVYAPAVLVTPLGALSIIIRYAVLAHFMLKERLQKMGILGCITCIVGSVVIV 123 (336)
Q Consensus 61 ~~~g~~~~~~al~~ap~slV~Pl~a~~lv~~~~~la~~~l~e~~~~~~~~G~~li~~G~~lvv 123 (336)
+..+..+.+.|+...|.+..+-+....-+++ .+++++++|||+++++|.|+.+..+|++++.
T Consensus 80 ~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~-~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~ 141 (256)
T TIGR00688 80 IGFNWWLFIWAVNNGSSLEVSLGYLINPLVM-VALGRVFLKERISRFQFIAVIIATLGVISNI 141 (256)
T ss_pred HHHHHHHHHHHHHcchHHHHHHHHHHHHHHH-HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 5567789999999999999999999999999 9999999999999999999999999987653
No 25
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=97.92 E-value=3.6e-05 Score=73.40 Aligned_cols=125 Identities=15% Similarity=0.101 Sum_probs=92.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHHhhhccCCC---c-----------cCCCccccchhh----hHHHHHHHHHHHHHH
Q 019718 6 NSKGLILAVASSAFIGSSFILKKKGLKRAGASGT---R-----------AGVGGYTYLLEP----LWWAGMVTMIVGEVA 67 (336)
Q Consensus 6 ~~iGv~LAl~sa~~~a~G~vlqk~~~~~~~~~~~---~-----------~~~~~~~~~~~p----~W~~G~~~~~~g~~~ 67 (336)
..+|..+++.++++.+...++.||..++.+.... . ............ .++.|+...++++.+
T Consensus 146 ~~~G~ll~l~aa~~~a~~~v~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lgv~~t~~~~~l 225 (293)
T PRK10532 146 DLTGAALALGAGACWAIYILSGQRAGAEHGPATVAIGSLIAALIFVPIGALQAGEALWHWSILPLGLAVAILSTALPYSL 225 (293)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHccCcccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3579999999999999999998886433221000 0 000000011111 246777777888889
Q ss_pred HHHHHhhcchhHhhhhhhhHHHHHHHHHHHHHhcccccccchhhHHHhhcceeEEEEecCCCCC
Q 019718 68 NFVAYVYAPAVLVTPLGALSIIIRYAVLAHFMLKERLQKMGILGCITCIVGSVVIVIHAPQEHT 131 (336)
Q Consensus 68 ~~~al~~ap~slV~Pl~a~~lv~~~~~la~~~l~e~~~~~~~~G~~li~~G~~lvv~~~~~~~~ 131 (336)
+..++...|.+.++++..+..+++ .+++.+++||+++..+++|.++++.|+.......+++++
T Consensus 226 ~~~~~~~~~a~~as~~~~l~Pv~a-~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~~~~~~~ 288 (293)
T PRK10532 226 EMIALTRLPTRTFGTLMSMEPALA-AVSGMIFLGETLTLIQWLALGAIIAASMGSTLTIRREPK 288 (293)
T ss_pred HHHHHHhcChhHHHHHHHhHHHHH-HHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 999999999999999999999999 999999999999999999999999998766444444433
No 26
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=97.63 E-value=0.00051 Score=63.41 Aligned_cols=114 Identities=18% Similarity=0.222 Sum_probs=85.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhHHhhhccCC---Cc--c------------CCCccccchhhhH----HHHHHHHHH
Q 019718 5 ENSKGLILAVASSAFIGSSFILKKKGLKRAGASG---TR--A------------GVGGYTYLLEPLW----WAGMVTMIV 63 (336)
Q Consensus 5 ~~~iGv~LAl~sa~~~a~G~vlqk~~~~~~~~~~---~~--~------------~~~~~~~~~~p~W----~~G~~~~~~ 63 (336)
....|..+++.++++.+...+++||..++.+... .+ . ..+.......+.| +.|....++
T Consensus 125 ~~~~G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (260)
T TIGR00950 125 INPAGLLLGLGSGISFALGTVLYKRLVKKEGPELLQFTGWVLLLGALLLLPFAWFLGPNPQALSLQWGALLYLGLIGTAL 204 (260)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHH
Confidence 3467999999999999999999999754432100 00 0 0000111122233 244444567
Q ss_pred HHHHHHHHHhhcchhHhhhhhhhHHHHHHHHHHHHHhcccccccchhhHHHhhcce
Q 019718 64 GEVANFVAYVYAPAVLVTPLGALSIIIRYAVLAHFMLKERLQKMGILGCITCIVGS 119 (336)
Q Consensus 64 g~~~~~~al~~ap~slV~Pl~a~~lv~~~~~la~~~l~e~~~~~~~~G~~li~~G~ 119 (336)
+..+++.++...|.+.+..+..+..+++ .+++.+++||+++..++.|+.+++.|+
T Consensus 205 ~~~~~~~a~~~~~~~~~s~~~~~~pv~~-~ll~~~~~~E~~~~~~~~G~~li~~g~ 259 (260)
T TIGR00950 205 AYFLWNKGLTLVDPSAASILALAEPLVA-LLLGLLILGETLSLPQLIGGALIIAAV 259 (260)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHH-HHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence 8889999999999999999999999999 999999999999999999999999885
No 27
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=97.62 E-value=0.00035 Score=58.67 Aligned_cols=73 Identities=18% Similarity=0.198 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcchhHhhhh-hhhHHHHHHHHHHHHHhcccccccchhhHHHhhcceeEEEEecC
Q 019718 54 WWAGMVTMIVGEVANFVAYVYAPAVLVTPL-GALSIIIRYAVLAHFMLKERLQKMGILGCITCIVGSVVIVIHAP 127 (336)
Q Consensus 54 W~~G~~~~~~g~~~~~~al~~ap~slV~Pl-~a~~lv~~~~~la~~~l~e~~~~~~~~G~~li~~G~~lvv~~~~ 127 (336)
|+..+.++++++.+...++...|+++.-|+ .+++.+.+ .+.+.+++||+++..++.|+.++++|++++-..++
T Consensus 33 ~~~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~-~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~~ 106 (120)
T PRK10452 33 FILMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFI-TLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGTR 106 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHH-HHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCCC
Confidence 456667788899999999999999999999 57999999 99999999999999999999999999877754444
No 28
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=97.60 E-value=0.00035 Score=57.73 Aligned_cols=76 Identities=14% Similarity=0.186 Sum_probs=64.6
Q ss_pred hhhhHHH-HHHHHHHHHHHHHHHHhhcchhHhhhh-hhhHHHHHHHHHHHHHhcccccccchhhHHHhhcceeEEEEec
Q 019718 50 LEPLWWA-GMVTMIVGEVANFVAYVYAPAVLVTPL-GALSIIIRYAVLAHFMLKERLQKMGILGCITCIVGSVVIVIHA 126 (336)
Q Consensus 50 ~~p~W~~-G~~~~~~g~~~~~~al~~ap~slV~Pl-~a~~lv~~~~~la~~~l~e~~~~~~~~G~~li~~G~~lvv~~~ 126 (336)
++|.|.+ .+.++++++.+...|+...|.++.-|+ .+++.+.+ .+.+.+++||+++..++.|..+++.|++++-..+
T Consensus 28 ~~~~~~i~~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~-~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~~ 105 (110)
T PRK09541 28 TRLWPSVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLI-SLLSWGFFGQRLDLPAIIGMMLICAGVLVINLLS 105 (110)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHH-HHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 3555544 445577888888899999999999999 77999999 9999999999999999999999999988774443
No 29
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=97.49 E-value=0.00042 Score=65.39 Aligned_cols=270 Identities=18% Similarity=0.255 Sum_probs=137.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHHhhhccC--CCccCC------Cccccchhh--------hHH--HHHHHHHHHHHH
Q 019718 6 NSKGLILAVASSAFIGSSFILKKKGLKRAGAS--GTRAGV------GGYTYLLEP--------LWW--AGMVTMIVGEVA 67 (336)
Q Consensus 6 ~~iGv~LAl~sa~~~a~G~vlqk~~~~~~~~~--~~~~~~------~~~~~~~~p--------~W~--~G~~~~~~g~~~ 67 (336)
..+|+.+..+| .+.+...++-+|...-.+.. ..|--. .-.-|.+.| .|+ -|+.-. .|..+
T Consensus 36 p~~gl~l~~vs-~ff~~~~vv~t~~~e~~p~e~a~~r~l~~mlit~pcliy~~~~v~gp~g~R~~LiLRg~mG~-tgvml 113 (346)
T KOG4510|consen 36 PNLGLLLLTVS-YFFNSCMVVSTKVLENDPMELASFRLLVRMLITYPCLIYYMQPVIGPEGKRKWLILRGFMGF-TGVML 113 (346)
T ss_pred CccCceehhhH-HHHhhHHHhhhhhhccChhHhhhhhhhhehhhhheEEEEEeeeeecCCCcEEEEEeehhhhh-hHHHH
Confidence 34688888888 77777777777754433321 011000 001122222 121 122111 34446
Q ss_pred HHHHHhhcchhHhhhhhhhHHHHHHHHHHHHHhcccccccchhhHHHhhcceeEEE----EecCCCCCCCCHHHHHHHhc
Q 019718 68 NFVAYVYAPAVLVTPLGALSIIIRYAVLAHFMLKERLQKMGILGCITCIVGSVVIV----IHAPQEHTPNSVQEIWALAT 143 (336)
Q Consensus 68 ~~~al~~ap~slV~Pl~a~~lv~~~~~la~~~l~e~~~~~~~~G~~li~~G~~lvv----~~~~~~~~~~t~~el~~~~~ 143 (336)
...||.+.|++=-.-+.-.+-+++ .++|+.+||||.++.|.+|+.....|+++++ +||..++...+.+ . -+.
T Consensus 114 myya~~~mslaDA~vItFssPvft-~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPpFlFG~~t~g~~~s~-~--~~~ 189 (346)
T KOG4510|consen 114 MYYALMYMSLADAVVITFSSPVFT-IIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPPFLFGDTTEGEDSSQ-V--EYD 189 (346)
T ss_pred HHHHHhhcchhheEEEEecChHHH-HHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCCcccCCCcccccccc-c--ccc
Confidence 667777777665555667788899 9999999999999999999999999999884 4555433322222 1 112
Q ss_pred ChhHHHHH-HHHHHHHHHHh-heecccCCCcchhhHHHHHHhhhhHHHHHHHHHHHHHHHhhcCCcc-cchhHHHHHHHH
Q 019718 144 QPDFLIYV-AATVSVVLALV-LHFEPRCGQTNILVYLGICSLMGSLTVVSIKAIGIAIKLTLDGISQ-IAYPQTWFFLTV 220 (336)
Q Consensus 144 ~~~fl~y~-~~~~~~~~~li-~~~~~~~g~~~~~~y~~isgllgg~tvl~~K~v~~~l~~~~~g~~~-f~~~~~y~ll~~ 220 (336)
.|....-+ .++.....+.+ .+..++-+.---+-|-+.-+++.++-.+ ..+ |.-| -..+.=|.+++.
T Consensus 190 ~~gt~aai~s~lf~asvyIilR~iGk~~h~~msvsyf~~i~lV~s~I~~----------~~i-g~~~lP~cgkdr~l~~~ 258 (346)
T KOG4510|consen 190 IPGTVAAISSVLFGASVYIILRYIGKNAHAIMSVSYFSLITLVVSLIGC----------ASI-GAVQLPHCGKDRWLFVN 258 (346)
T ss_pred CCchHHHHHhHhhhhhHHHHHHHhhccccEEEEehHHHHHHHHHHHHHH----------hhc-cceecCccccceEEEEE
Confidence 23322111 11111111111 1222221110011222221211111000 011 1111 112222333333
Q ss_pred HHHHHHHHHHHHHHhhccccccchhhhHHHHHHHHHHHHHHHHhcccCCCChhHHHHHHHHHHHHHHhhhhhccccCCC
Q 019718 221 AAVCVVTQLNYLNKALDTFNAAIVSPVYYVMFTTLTIIASAIMFKDWSGQDVSGIASEICGFITVLSGTIILHATREHE 299 (336)
Q Consensus 221 ~v~~~~~Q~~~Ln~aL~~~~~~~v~P~~~v~~~~~~i~~G~i~f~E~~~~~~~~~~~~~~G~~~~i~GV~lLs~~~~~~ 299 (336)
+-+..+..+.++.+++|+=.+-. +.++.+...+.+.+.-+++|+|+-+ .|.|. |.+.++..++..+.+|-.+
T Consensus 259 lGvfgfigQIllTm~lQiErAGp-vaim~~~dvvfAf~wqv~ff~~~Pt--~ws~~----Ga~~vvsS~v~~a~~kwa~ 330 (346)
T KOG4510|consen 259 LGVFGFIGQILLTMGLQIERAGP-VAIMTYTDVVFAFFWQVLFFGHWPT--IWSWV----GAVMVVSSTVWVALKKWAG 330 (346)
T ss_pred ehhhhhHHHHHHHHHhhhhccCC-eehhhHHHHHHHHHHHHHHhcCCCh--HHHhh----ceeeeehhHHHHHHHHHhc
Confidence 33344445568999998644433 4567788888999999999999853 55553 4333444444444444433
No 30
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=97.44 E-value=0.00043 Score=68.41 Aligned_cols=117 Identities=20% Similarity=0.168 Sum_probs=83.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHHhhhccCCCcc-------------------CCCccccc--hhhhHHHHHHH----
Q 019718 6 NSKGLILAVASSAFIGSSFILKKKGLKRAGASGTRA-------------------GVGGYTYL--LEPLWWAGMVT---- 60 (336)
Q Consensus 6 ~~iGv~LAl~sa~~~a~G~vlqk~~~~~~~~~~~~~-------------------~~~~~~~~--~~p~W~~G~~~---- 60 (336)
+.+|..+++.|+++.++..++|||..++-+...... +....... .++ ++..++.
T Consensus 187 ~~lG~~l~l~aa~~wa~~~il~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~i~y~~i~ 265 (358)
T PLN00411 187 WLIGGALLTIQGIFVSVSFILQAHIMSEYPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSVWIIHFDI-TLITIVTMAII 265 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHhHHHHHHHHHHHHHHHHHHHHHccCCcccceeccch-HHHHHHHHHHH
Confidence 577999999999999999999998655432210000 00000000 011 1111221
Q ss_pred HHHHHHHHHHHHhhcchhHhhhhhhhHHHHHHHHHHHHHhcccccccchhhHHHhhcceeEEEE
Q 019718 61 MIVGEVANFVAYVYAPAVLVTPLGALSIIIRYAVLAHFMLKERLQKMGILGCITCIVGSVVIVI 124 (336)
Q Consensus 61 ~~~g~~~~~~al~~ap~slV~Pl~a~~lv~~~~~la~~~l~e~~~~~~~~G~~li~~G~~lvv~ 124 (336)
..+++.++.-++...+++.+....-+..+++ ++++..+++|+++..+++|+++++.|+.++..
T Consensus 266 t~lay~lw~~~v~~~ga~~as~~~~L~PV~a-~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~~ 328 (358)
T PLN00411 266 TSVYYVIHSWTVRHKGPLYLAIFKPLSILIA-VVMGAIFLNDSLYLGCLIGGILITLGFYAVMW 328 (358)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHhHHHHHH-HHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHh
Confidence 2236667778889999999999999999999 99999999999999999999999999877644
No 31
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=97.38 E-value=0.00093 Score=63.60 Aligned_cols=117 Identities=15% Similarity=0.071 Sum_probs=85.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhHHhhhccCC-C---------------ccCCCccccchhhhHH----HHHHHHHHH
Q 019718 5 ENSKGLILAVASSAFIGSSFILKKKGLKRAGASG-T---------------RAGVGGYTYLLEPLWW----AGMVTMIVG 64 (336)
Q Consensus 5 ~~~iGv~LAl~sa~~~a~G~vlqk~~~~~~~~~~-~---------------~~~~~~~~~~~~p~W~----~G~~~~~~g 64 (336)
....|..+++.++++.|.+.+.+||..++.+... . -.+...........|+ .|....+++
T Consensus 147 ~~~~G~l~~l~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~i~~s~~~ 226 (292)
T PRK11272 147 GNPWGAILILIASASWAFGSVWSSRLPLPVGMMAGAAEMLAAGVVLLIASLLSGERLTALPTLSGFLALGYLAVFGSIIA 226 (292)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHHHHHHH
Confidence 3457999999999999999999988533211100 0 0000000001112332 344445677
Q ss_pred HHHHHHHHhhcchhHhhhhhhhHHHHHHHHHHHHHhcccccccchhhHHHhhcceeEE
Q 019718 65 EVANFVAYVYAPAVLVTPLGALSIIIRYAVLAHFMLKERLQKMGILGCITCIVGSVVI 122 (336)
Q Consensus 65 ~~~~~~al~~ap~slV~Pl~a~~lv~~~~~la~~~l~e~~~~~~~~G~~li~~G~~lv 122 (336)
..++..++...|.+.+..+..+..+++ .+++.+++||+++..++.|+++++.|+.+.
T Consensus 227 ~~l~~~~~~~~~~~~~s~~~~l~Pi~a-~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~ 283 (292)
T PRK11272 227 ISAYMYLLRNVRPALATSYAYVNPVVA-VLLGTGLGGETLSPIEWLALGVIVFAVVLV 283 (292)
T ss_pred HHHHHHHHhhcCHHHHHHHHHHHHHHH-HHHHHHHcCCCCcHHHHHHHHHHHHHHHHH
Confidence 788999999999999999999999999 999999999999999999999999998654
No 32
>PRK11689 aromatic amino acid exporter; Provisional
Probab=97.37 E-value=0.00084 Score=64.03 Aligned_cols=115 Identities=16% Similarity=0.070 Sum_probs=83.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHHhhhccCCCcc---C---------CCccccchhh-hH----HHHHHHHHHHHHHH
Q 019718 6 NSKGLILAVASSAFIGSSFILKKKGLKRAGASGTRA---G---------VGGYTYLLEP-LW----WAGMVTMIVGEVAN 68 (336)
Q Consensus 6 ~~iGv~LAl~sa~~~a~G~vlqk~~~~~~~~~~~~~---~---------~~~~~~~~~p-~W----~~G~~~~~~g~~~~ 68 (336)
...|..+++.|+++.+.+.++.||-.++.+...... + .+....-.++ .| +.| ...++++.++
T Consensus 154 ~~~G~~~~l~aa~~~A~~~v~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~-~~t~~~~~l~ 232 (295)
T PRK11689 154 NPLSYGLAFIGAFIWAAYCNVTRKYARGKNGITLFFILTALALWIKYFLSPQPAMVFSLPAIIKLLLAA-AAMGFGYAAW 232 (295)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHhcCccccCCHHHHHHHHHHH-HHHHHHHHHH
Confidence 356999999999999999999999543221100000 0 0000001112 22 222 2345677888
Q ss_pred HHHHhhcchhHhhhhhhhHHHHHHHHHHHHHhcccccccchhhHHHhhcceeEE
Q 019718 69 FVAYVYAPAVLVTPLGALSIIIRYAVLAHFMLKERLQKMGILGCITCIVGSVVI 122 (336)
Q Consensus 69 ~~al~~ap~slV~Pl~a~~lv~~~~~la~~~l~e~~~~~~~~G~~li~~G~~lv 122 (336)
..++...|.+.+.++..+..+++ .+++..++||+++..+++|.++++.|+.+.
T Consensus 233 ~~al~~~~a~~~s~~~~l~Pv~a-~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~ 285 (295)
T PRK11689 233 NVGILHGNMTLLATASYFTPVLS-AALAALLLSTPLSFSFWQGVAMVTAGSLLC 285 (295)
T ss_pred HHHHHccCHHHHHHHHHhHHHHH-HHHHHHHhCCCCcHHHHHHHHHHHHhHHHH
Confidence 99999999999999999999999 999999999999999999999999997654
No 33
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=97.35 E-value=0.0077 Score=56.43 Aligned_cols=68 Identities=21% Similarity=0.341 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHHhhcchhHhhhhhhhHHHHHHHHHHHHHhcccccccchhhHHHhhcceeEEEEecC
Q 019718 59 VTMIVGEVANFVAYVYAPAVLVTPLGALSIIIRYAVLAHFMLKERLQKMGILGCITCIVGSVVIVIHAP 127 (336)
Q Consensus 59 ~~~~~g~~~~~~al~~ap~slV~Pl~a~~lv~~~~~la~~~l~e~~~~~~~~G~~li~~G~~lvv~~~~ 127 (336)
++|.+.+.+.+.++...+.+.-|=+....++++ ++++.++||+|+++++|++..+.++|++++-..+.
T Consensus 25 ~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~T-Al~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~ 92 (244)
T PF04142_consen 25 LLYAIQNNLQFVALSYLDPSTFQVLSQSKILFT-ALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSS 92 (244)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHH-HHHHHHHHHcccchhhHHHHHHHHHHHheeecCCc
Confidence 679999999999999999999999999999999 99999999999999999999999999888755443
No 34
>COG2510 Predicted membrane protein [Function unknown]
Probab=97.32 E-value=0.0012 Score=55.95 Aligned_cols=66 Identities=18% Similarity=0.240 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHhhccccccchhhhHHHHHHHHHHHHHHHHhcccCCCChhHHHHHHHHHHHHHHhhhhhccc
Q 019718 222 AVCVVTQLNYLNKALDTFNAAIVSPVYYVMFTTLTIIASAIMFKDWSGQDVSGIASEICGFITVLSGTIILHAT 295 (336)
Q Consensus 222 v~~~~~Q~~~Ln~aL~~~~~~~v~P~~~v~~~~~~i~~G~i~f~E~~~~~~~~~~~~~~G~~~~i~GV~lLs~~ 295 (336)
+.+.+.++.| =+||+.++++.|.|+= -+.+..+++-+.++++|..+. .+ ..|+.++.+|+++++++
T Consensus 75 la~glswl~Y-f~ALk~G~as~VvPld-k~svvl~~lls~lfL~E~ls~--~~----~iG~~LI~~Gailvs~~ 140 (140)
T COG2510 75 LAGGLSWLLY-FRALKKGKASRVVPLD-KTSVVLAVLLSILFLGERLSL--PT----WIGIVLIVIGAILVSLR 140 (140)
T ss_pred HHHHHHHHHH-HHHHhcCCcceEEEcc-cccHHHHHHHHHHHhcCCCCH--HH----HHHHHHHHhCeeeEecC
Confidence 3444444333 3789999999999985 566777888999999996554 33 37888999999998864
No 35
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=97.31 E-value=0.00043 Score=65.47 Aligned_cols=113 Identities=19% Similarity=0.109 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHhhhccCCCc----c-----C-C---------Ccccc-chhhhH----HHHHHHHHH
Q 019718 8 KGLILAVASSAFIGSSFILKKKGLKRAGASGTR----A-----G-V---------GGYTY-LLEPLW----WAGMVTMIV 63 (336)
Q Consensus 8 iGv~LAl~sa~~~a~G~vlqk~~~~~~~~~~~~----~-----~-~---------~~~~~-~~~p~W----~~G~~~~~~ 63 (336)
-|..+++.++++.+.+.++.|+..++.+....- . . . +.... ...+.| +.+....++
T Consensus 144 ~g~~~~l~aal~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~l 223 (281)
T TIGR03340 144 KAYAWALAAALGTAIYSLSDKAAALGVPAFYSALGYLGIGFLAMGWPFLLLYLKRHGRSMFPYARQILPSATLGGLMIGG 223 (281)
T ss_pred hHHHHHHHHHHHHHHhhhhccccccchhcccccHHHHHHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHHH
Confidence 467788999999999988888753322210000 0 0 0 00000 011122 233344557
Q ss_pred HHHHHHHHHhhcchhHhhhhhhhHHHHHHHHHHHHHhcccccccchhhHHHhhcceeE
Q 019718 64 GEVANFVAYVYAPAVLVTPLGALSIIIRYAVLAHFMLKERLQKMGILGCITCIVGSVV 121 (336)
Q Consensus 64 g~~~~~~al~~ap~slV~Pl~a~~lv~~~~~la~~~l~e~~~~~~~~G~~li~~G~~l 121 (336)
++.+++.++...|.+.+.++.-++.+++ .+++.+++||+++..++.|.+++.+|+.+
T Consensus 224 ~~~l~~~al~~~~a~~~~~~~~l~pv~a-~l~g~~~lgE~~~~~~~iG~~lil~Gv~l 280 (281)
T TIGR03340 224 AYALVLWAMTRLPVATVVALRNTSIVFA-VVLGIWFLNERWYLTRLMGVCIIVAGLVV 280 (281)
T ss_pred HHHHHHHHHhhCCceEEEeecccHHHHH-HHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence 7888899999999999999999999999 99999999999999999999999999754
No 36
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=97.30 E-value=0.00017 Score=58.28 Aligned_cols=68 Identities=31% Similarity=0.438 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcchhHhhhhhhhHHHHHHHHHHHHHhcccccccchhhHHHhhcceeEE
Q 019718 54 WWAGMVTMIVGEVANFVAYVYAPAVLVTPLGALSIIIRYAVLAHFMLKERLQKMGILGCITCIVGSVVI 122 (336)
Q Consensus 54 W~~G~~~~~~g~~~~~~al~~ap~slV~Pl~a~~lv~~~~~la~~~l~e~~~~~~~~G~~li~~G~~lv 122 (336)
...|.+...++..+...++...|.+.++++..++.+++ .+++..++||+++++++.|+.+++.|+.++
T Consensus 57 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~pv~~-~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~ 124 (126)
T PF00892_consen 57 LFLGLLGTALAYLLYFYALKYISASIVSILQYLSPVFA-AILGWLFLGERPSWRQIIGIILIIIGVVLI 124 (126)
T ss_pred hHhhccceehHHHHHHHHHHhcchhHHHHHHHHHHHHH-HHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence 34555556788899999999999999999999999999 999999999999999999999999997653
No 37
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=97.19 E-value=0.0026 Score=60.75 Aligned_cols=116 Identities=21% Similarity=0.198 Sum_probs=83.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHHhhhccCCCcc---C----------------CCccc-----cchhhh-HH----H
Q 019718 6 NSKGLILAVASSAFIGSSFILKKKGLKRAGASGTRA---G----------------VGGYT-----YLLEPL-WW----A 56 (336)
Q Consensus 6 ~~iGv~LAl~sa~~~a~G~vlqk~~~~~~~~~~~~~---~----------------~~~~~-----~~~~p~-W~----~ 56 (336)
...|..+++.++++.+...+++||..++.+....-. . ..... .-.++. |+ .
T Consensus 141 ~~~G~~l~l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 220 (299)
T PRK11453 141 AMLGFMLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLMYL 220 (299)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHHHHHH
Confidence 347999999999999999999998543222100000 0 00000 001122 22 3
Q ss_pred HHHHHHHHHHHHHHHHhhcchhHhhhhhhhHHHHHHHHHHHHHhcccccccchhhHHHhhcceeEE
Q 019718 57 GMVTMIVGEVANFVAYVYAPAVLVTPLGALSIIIRYAVLAHFMLKERLQKMGILGCITCIVGSVVI 122 (336)
Q Consensus 57 G~~~~~~g~~~~~~al~~ap~slV~Pl~a~~lv~~~~~la~~~l~e~~~~~~~~G~~li~~G~~lv 122 (336)
|+...++++.+++.++.-.+..-+.++..+..+++ .+++.+++||+++..+++|.++++.|+.+.
T Consensus 221 ~i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a-~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~ 285 (299)
T PRK11453 221 AFVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVG-LASAALLLDERLTGLQFLGAVLIMAGLYIN 285 (299)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH-HHHHHHHhCCCccHHHHHHHHHHHHHHHHH
Confidence 44455667777778888888999999999999999 999999999999999999999999997644
No 38
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=97.18 E-value=0.0062 Score=51.12 Aligned_cols=74 Identities=11% Similarity=0.268 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHhhccccccchhhhHHHHHHHHHHHHHHHHhcccCCCChhHHHHHHHHHHHHHHhhhhhccccCCCCCCC
Q 019718 224 CVVTQLNYLNKALDTFNAAIVSPVYYVMFTTLTIIASAIMFKDWSGQDVSGIASEICGFITVLSGTIILHATREHEQTTA 303 (336)
Q Consensus 224 ~~~~Q~~~Ln~aL~~~~~~~v~P~~~v~~~~~~i~~G~i~f~E~~~~~~~~~~~~~~G~~~~i~GV~lLs~~~~~~~~~~ 303 (336)
+...=.+++.++++.-|..+.+|+....-.+...+.|.++|+|..+ .. -.+|+.+++.|++.+....++.++++
T Consensus 39 ~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s--~~----~~~gi~lIi~GVi~l~l~~~~~~~~~ 112 (120)
T PRK10452 39 MISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLS--LM----KIAGLTTLVAGIVLIKSGTRKARKPE 112 (120)
T ss_pred HHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCC--HH----HHHHHHHHHHHHHHhhcCCCCCCccc
Confidence 3333456899999999999999998888888889999999999544 44 34777889999999976555443333
No 39
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=97.13 E-value=0.0082 Score=49.51 Aligned_cols=107 Identities=16% Similarity=0.191 Sum_probs=69.9
Q ss_pred hHHHHHHhhhhHHHHHHHHHHHHHHHhhcCCcccchhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhHHHHHHHH
Q 019718 176 VYLGICSLMGSLTVVSIKAIGIAIKLTLDGISQIAYPQTWFFLTVAAVCVVTQLNYLNKALDTFNAAIVSPVYYVMFTTL 255 (336)
Q Consensus 176 ~y~~isgllgg~tvl~~K~v~~~l~~~~~g~~~f~~~~~y~ll~~~v~~~~~Q~~~Ln~aL~~~~~~~v~P~~~v~~~~~ 255 (336)
.|..++.++.....++-|.... .....+.+|...........+...-..++..++++-|....+|+.+ .-++.
T Consensus 4 ~~l~~ai~~ev~g~~~lK~s~~------~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~al~~iplg~Ay~~~~-l~~v~ 76 (111)
T PRK15051 4 LTLVFASLLSVAGQLCQKQATR------PVAIGKRRKHIVLWLGLALACLGLAMVLWLLVLQNVPVGIAYPMLS-LNFVW 76 (111)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc------cCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHH-HHHHH
Confidence 3444455444444445554221 0012345554444444444444555668889999999999999998 77777
Q ss_pred HHHHHHHHhcccCCCChhHHHHHHHHHHHHHHhhhhhccc
Q 019718 256 TIIASAIMFKDWSGQDVSGIASEICGFITVLSGTIILHAT 295 (336)
Q Consensus 256 ~i~~G~i~f~E~~~~~~~~~~~~~~G~~~~i~GV~lLs~~ 295 (336)
+.+.|..+|+|.. ++.+ .+|..++++|+++++++
T Consensus 77 ~~~~~~l~f~E~l--s~~~----~~Gi~lii~Gv~~i~~~ 110 (111)
T PRK15051 77 VTLAAVKLWHEPV--SPRH----WCGVAFIIGGIVILGST 110 (111)
T ss_pred HHHHHHHHhCCCC--CHHH----HHHHHHHHHHHHHHhcc
Confidence 8889999999954 4554 46777888999988864
No 40
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=97.07 E-value=0.0035 Score=50.04 Aligned_cols=65 Identities=15% Similarity=0.004 Sum_probs=37.1
Q ss_pred hhhhHHHHHH-HHHHHHHHHHHHHhhcchhHhhhh-hhhHHHHHHHHHHHHHhcccccccchhhHHHh
Q 019718 50 LEPLWWAGMV-TMIVGEVANFVAYVYAPAVLVTPL-GALSIIIRYAVLAHFMLKERLQKMGILGCITC 115 (336)
Q Consensus 50 ~~p~W~~G~~-~~~~g~~~~~~al~~ap~slV~Pl-~a~~lv~~~~~la~~~l~e~~~~~~~~G~~li 115 (336)
+++.|..+.+ ++.++..+...|+...|.++.=|+ .+++.+.. .+.+.++.||+++..++.|+.++
T Consensus 27 ~~~~~~~~~~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~-~~~~~~~f~E~~s~~~~~gi~lI 93 (93)
T PF00893_consen 27 TQLIPTILAVVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGV-TLVGVFFFGESLSLSKWLGIGLI 93 (93)
T ss_dssp -------HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH-HHHHHHHH--------HHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHH-HHHHHHHhCCCCCHHHHhheeeC
Confidence 3455555555 577888899999999999999997 46999999 99999999999999999999875
No 41
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=96.95 E-value=0.013 Score=48.48 Aligned_cols=79 Identities=14% Similarity=0.188 Sum_probs=60.7
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhHHHHHHHHHHHHHHHHhcccCCCChhHHHHHHHHHHHHHHh
Q 019718 209 IAYPQTWFFLTVAAVCVVTQLNYLNKALDTFNAAIVSPVYYVMFTTLTIIASAIMFKDWSGQDVSGIASEICGFITVLSG 288 (336)
Q Consensus 209 f~~~~~y~ll~~~v~~~~~Q~~~Ln~aL~~~~~~~v~P~~~v~~~~~~i~~G~i~f~E~~~~~~~~~~~~~~G~~~~i~G 288 (336)
|++|.+....++ +...-.+++.+++++-|....+|+-...-++...+.|.++|+|.. ++. -..|..+++.|
T Consensus 27 f~~~~~~i~~~~---~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~--~~~----~~~gi~lIi~G 97 (110)
T PRK09541 27 FTRLWPSVGTII---CYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRL--DLP----AIIGMMLICAG 97 (110)
T ss_pred CCchhHHHHHHH---HHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCC--CHH----HHHHHHHHHHH
Confidence 777777665433 333344589999999999999999888888889999999999954 444 34677889999
Q ss_pred hhhhcccc
Q 019718 289 TIILHATR 296 (336)
Q Consensus 289 V~lLs~~~ 296 (336)
|+.+....
T Consensus 98 Vi~l~l~~ 105 (110)
T PRK09541 98 VLVINLLS 105 (110)
T ss_pred HHHHhcCC
Confidence 99996543
No 42
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=96.65 E-value=0.082 Score=51.84 Aligned_cols=76 Identities=12% Similarity=0.172 Sum_probs=65.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcchhHhhhhhhhHHHHHHHHHHHHHhcccccccchhhHHHhhcceeEEEEecCCC
Q 019718 53 LWWAGMVTMIVGEVANFVAYVYAPAVLVTPLGALSIIIRYAVLAHFMLKERLQKMGILGCITCIVGSVVIVIHAPQE 129 (336)
Q Consensus 53 ~W~~G~~~~~~g~~~~~~al~~ap~slV~Pl~a~~lv~~~~~la~~~l~e~~~~~~~~G~~li~~G~~lvv~~~~~~ 129 (336)
.|-+=-++|.+-+-.++++++..|.+.-+....+-+..+ ++++..+|++|+++++|....+..+|+.++=+..+++
T Consensus 94 k~~vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tT-A~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~~~~ 169 (345)
T KOG2234|consen 94 KVSVPALIYALQNNLQYVALSNLDAATYQVTYQLKILTT-AIFSVLILRRKLSRLQWMALVLLFAGVALVQLPSLSP 169 (345)
T ss_pred HHHHHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHH-HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCC
Confidence 334445688888889999999999999999999999999 9999999999999999999999999988775333333
No 43
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=96.63 E-value=0.0044 Score=51.17 Aligned_cols=73 Identities=16% Similarity=0.212 Sum_probs=60.0
Q ss_pred chhhhHHHHHHH-HHHHHHHHHHHHhhcchhHhhhh-hhhHHHHHHHHHHHHHhcccccccchhhHHHhhcceeEE
Q 019718 49 LLEPLWWAGMVT-MIVGEVANFVAYVYAPAVLVTPL-GALSIIIRYAVLAHFMLKERLQKMGILGCITCIVGSVVI 122 (336)
Q Consensus 49 ~~~p~W~~G~~~-~~~g~~~~~~al~~ap~slV~Pl-~a~~lv~~~~~la~~~l~e~~~~~~~~G~~li~~G~~lv 122 (336)
+++|.|...+.. +++++.+-..|+...|..+.=++ .+++.+.+ .+.+.++.||+++..++.|..+++.|++.+
T Consensus 32 f~~~~~~~~~~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~-~~ig~~~f~e~~~~~~~~gi~lIi~GVi~l 106 (109)
T PRK10650 32 FRRKIYGILSLAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAAT-LAAGWILFGQRLNRKGWIGLVLLLAGMVMI 106 (109)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHH-HHHHHHHcCCCCCHHHHHHHHHHHHHHHHh
Confidence 456777666654 56677777788888999988776 45888999 999999999999999999999999997654
No 44
>PRK11431 multidrug efflux system protein; Provisional
Probab=96.60 E-value=0.0053 Score=50.35 Aligned_cols=72 Identities=15% Similarity=0.038 Sum_probs=59.2
Q ss_pred hhhhHHHHHH-HHHHHHHHHHHHHhhcchhHhhhh-hhhHHHHHHHHHHHHHhcccccccchhhHHHhhcceeEE
Q 019718 50 LEPLWWAGMV-TMIVGEVANFVAYVYAPAVLVTPL-GALSIIIRYAVLAHFMLKERLQKMGILGCITCIVGSVVI 122 (336)
Q Consensus 50 ~~p~W~~G~~-~~~~g~~~~~~al~~ap~slV~Pl-~a~~lv~~~~~la~~~l~e~~~~~~~~G~~li~~G~~lv 122 (336)
+++.|+..+. ++.+++.+-..|+...|.++.=++ .+++.+.+ .+.+.++.||+++..++.|+.+++.|++.+
T Consensus 27 ~~~~~~~~~i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~-~lig~~~f~e~~~~~~~~gi~lIi~GVv~l 100 (105)
T PRK11431 27 SRLTPSIITVTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGA-AITGIVLLGESASPARLLSLALIVAGIIGL 100 (105)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHH-HHHHHHHhCCCCCHHHHHHHHHHHHHHHhh
Confidence 3566655543 466777777888888999888776 45999999 999999999999999999999999998765
No 45
>PRK11431 multidrug efflux system protein; Provisional
Probab=96.57 E-value=0.033 Score=45.65 Aligned_cols=80 Identities=10% Similarity=0.138 Sum_probs=61.5
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhHHHHHHHHHHHHHHHHhcccCCCChhHHHHHHHHHHHHH
Q 019718 207 SQIAYPQTWFFLTVAAVCVVTQLNYLNKALDTFNAAIVSPVYYVMFTTLTIIASAIMFKDWSGQDVSGIASEICGFITVL 286 (336)
Q Consensus 207 ~~f~~~~~y~ll~~~v~~~~~Q~~~Ln~aL~~~~~~~v~P~~~v~~~~~~i~~G~i~f~E~~~~~~~~~~~~~~G~~~~i 286 (336)
+.|++|.++++.++.... =.+++.+|+|.-|..+.+++-...=++...+.|.++|+|..+ +.+ .+|+.+++
T Consensus 24 ~gf~~~~~~~~~i~~~~~---sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~--~~~----~~gi~lIi 94 (105)
T PRK11431 24 HGFSRLTPSIITVTAMIV---SMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESAS--PAR----LLSLALIV 94 (105)
T ss_pred hCCccHHHHHHHHHHHHH---HHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCC--HHH----HHHHHHHH
Confidence 347888777765444433 345899999999999999999888889999999999999554 443 46678899
Q ss_pred Hhhhhhccc
Q 019718 287 SGTIILHAT 295 (336)
Q Consensus 287 ~GV~lLs~~ 295 (336)
.||+.|...
T Consensus 95 ~GVv~l~l~ 103 (105)
T PRK11431 95 AGIIGLKLS 103 (105)
T ss_pred HHHHhhhcc
Confidence 999988543
No 46
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=96.57 E-value=0.01 Score=54.75 Aligned_cols=114 Identities=25% Similarity=0.247 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHhhhccCC-Cc------cC--------CCc-cccc-hhhhH--HHHHHHHHHHHHH
Q 019718 7 SKGLILAVASSAFIGSSFILKKKGLKRAGASG-TR------AG--------VGG-YTYL-LEPLW--WAGMVTMIVGEVA 67 (336)
Q Consensus 7 ~iGv~LAl~sa~~~a~G~vlqk~~~~~~~~~~-~~------~~--------~~~-~~~~-~~p~W--~~G~~~~~~g~~~ 67 (336)
..|+.+++.++++.+...+++|+.. +.+... .. .. ... .+.. +...+ +.|+....++..+
T Consensus 153 ~~g~~~~l~a~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~ 231 (292)
T COG0697 153 LLGLLLALAAALLWALYTALVKRLS-RLGPVTLALLLQLLLALLLLLLFFLSGFGAPILSRAWLLLLYLGVFSTGLAYLL 231 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999999999999999754 211100 00 00 000 0111 11111 2334444467788
Q ss_pred HHHHHhhcchhHhhhhhhhHHHHHHHHHHHHHhcccccccchhhHHHhhcceeEE
Q 019718 68 NFVAYVYAPAVLVTPLGALSIIIRYAVLAHFMLKERLQKMGILGCITCIVGSVVI 122 (336)
Q Consensus 68 ~~~al~~ap~slV~Pl~a~~lv~~~~~la~~~l~e~~~~~~~~G~~li~~G~~lv 122 (336)
+..++...|.+.++++..+..+++ .+++.++++|+++.+++.|+++++.|+.+.
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~l~~~e~~~~~~~~G~~li~~g~~l~ 285 (292)
T COG0697 232 WYYALRLLGASLVALLSLLEPVFA-ALLGVLLLGEPLSPAQLLGAALVVLGVLLA 285 (292)
T ss_pred HHHHHHhcCchHHHHHHHHHHHHH-HHHHHHHhCCCCcHHHHHHHHHHHHHHHHH
Confidence 889999999999999999999999 999999999999999999999999997654
No 47
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=96.47 E-value=0.22 Score=47.77 Aligned_cols=76 Identities=18% Similarity=0.239 Sum_probs=55.8
Q ss_pred ccccchhhhHHHHHHHHHHHHHHHHHHHhhcchh---HhhhhhhhHH-HHHHHHHHHHHhcccccccchhhHHHhhccee
Q 019718 45 GYTYLLEPLWWAGMVTMIVGEVANFVAYVYAPAV---LVTPLGALSI-IIRYAVLAHFMLKERLQKMGILGCITCIVGSV 120 (336)
Q Consensus 45 ~~~~~~~p~W~~G~~~~~~g~~~~~~al~~ap~s---lV~Pl~a~~l-v~~~~~la~~~l~e~~~~~~~~G~~li~~G~~ 120 (336)
.++..|+|+=+....+..+=...|..-+-+||-+ +=+.+|=.=. ++| +++++.++|||+++.+|+++.+..+|+.
T Consensus 62 ~~~~~~~p~~~~~~~l~a~li~~nW~lfiWAvn~g~~leaSLGY~InPL~~-VllG~lflkErls~~Q~iAV~lA~~GV~ 140 (293)
T COG2962 62 LKQLLKQPKTLLMLALTALLIGLNWWLFIWAVNNGHVLEASLGYFINPLVN-VLLGRLFLKERLSRLQWIAVGLAAAGVL 140 (293)
T ss_pred HHHHHhCcHHHHHHHHHHHHHHHHHHHhheecCCCchhHHHhHHHHHHHHH-HHHHHHHHHhhccHHHHHHHHHHHHHHH
Confidence 3456778877777766655556777777777755 3344443322 345 9999999999999999999999999975
Q ss_pred E
Q 019718 121 V 121 (336)
Q Consensus 121 l 121 (336)
.
T Consensus 141 ~ 141 (293)
T COG2962 141 I 141 (293)
T ss_pred H
Confidence 4
No 48
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=96.29 E-value=0.019 Score=54.83 Aligned_cols=62 Identities=11% Similarity=-0.045 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHhhcchhHhhhhhhhHHHHHHHHHHHHHhcccccccchhhHHHhhcceeEEE
Q 019718 61 MIVGEVANFVAYVYAPAVLVTPLGALSIIIRYAVLAHFMLKERLQKMGILGCITCIVGSVVIV 123 (336)
Q Consensus 61 ~~~g~~~~~~al~~ap~slV~Pl~a~~lv~~~~~la~~~l~e~~~~~~~~G~~li~~G~~lvv 123 (336)
..+++.+.+.++...|.+.++++.-++.+++ .+++.++++|+++...+.|++++++|+.++.
T Consensus 223 t~i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a-~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~ 284 (296)
T PRK15430 223 TTVPLLCFTAAATRLRLSTLGFFQYIGPTLM-FLLAVTFYGEKPGADKMVTFAFIWVALAIFV 284 (296)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH-HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 3367889999999999999999999999999 9999999999999999999999988876553
No 49
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=96.27 E-value=0.058 Score=44.56 Aligned_cols=78 Identities=14% Similarity=0.229 Sum_probs=59.8
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhHHHHHHHHHHHHHHHHhcccCCCChhHHHHHHHHHHHHH
Q 019718 207 SQIAYPQTWFFLTVAAVCVVTQLNYLNKALDTFNAAIVSPVYYVMFTTLTIIASAIMFKDWSGQDVSGIASEICGFITVL 286 (336)
Q Consensus 207 ~~f~~~~~y~ll~~~v~~~~~Q~~~Ln~aL~~~~~~~v~P~~~v~~~~~~i~~G~i~f~E~~~~~~~~~~~~~~G~~~~i 286 (336)
+.|++|.+.+..++.... =.+++.+|+|+-|....+|+-...-++...+.|.++|+|.. ++.+ .+|..+++
T Consensus 30 ~gf~~~~~~~~~~~~~~~---sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~--~~~~----~~gi~lIi 100 (109)
T PRK10650 30 DGFRRKIYGILSLAAVLA---AFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRL--NRKG----WIGLVLLL 100 (109)
T ss_pred cCCcchHHHHHHHHHHHH---HHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCC--CHHH----HHHHHHHH
Confidence 347888776655444333 34589999999999999999998888999999999999954 4443 46777888
Q ss_pred Hhhhhhc
Q 019718 287 SGTIILH 293 (336)
Q Consensus 287 ~GV~lLs 293 (336)
.|++.|.
T Consensus 101 ~GVi~lk 107 (109)
T PRK10650 101 AGMVMIK 107 (109)
T ss_pred HHHHHhc
Confidence 8988873
No 50
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=96.23 E-value=0.062 Score=44.14 Aligned_cols=78 Identities=15% Similarity=0.158 Sum_probs=59.8
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhHHHHHHHHHHHHHHHHhcccCCCChhHHHHHHHHHHHHHHh
Q 019718 209 IAYPQTWFFLTVAAVCVVTQLNYLNKALDTFNAAIVSPVYYVMFTTLTIIASAIMFKDWSGQDVSGIASEICGFITVLSG 288 (336)
Q Consensus 209 f~~~~~y~ll~~~v~~~~~Q~~~Ln~aL~~~~~~~v~P~~~v~~~~~~i~~G~i~f~E~~~~~~~~~~~~~~G~~~~i~G 288 (336)
|+++.++++.++..... .++|.+|+|+-|....+++-.-.=+....+.|.++|+|..+ +. -..|+.++++|
T Consensus 27 f~~~~~~il~~v~~~~s---f~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~--~~----~~~gl~LiiaG 97 (106)
T COG2076 27 FTRLWPSILTIVGYGLS---FYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLS--LI----KLLGLALILAG 97 (106)
T ss_pred ccccchHHHHHHHHHHH---HHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCC--HH----HHHHHHHHHHH
Confidence 66766666544444333 34899999999999999999999999999999999999654 43 34677889999
Q ss_pred hhhhccc
Q 019718 289 TIILHAT 295 (336)
Q Consensus 289 V~lLs~~ 295 (336)
++.|...
T Consensus 98 vi~Lk~~ 104 (106)
T COG2076 98 VIGLKLG 104 (106)
T ss_pred HHHhhhc
Confidence 9988643
No 51
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=96.22 E-value=0.13 Score=43.66 Aligned_cols=74 Identities=11% Similarity=0.150 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHHHHhhccccccchhhhHHHHHHHHHHHHHH-HHhcccCCCChhHHHHHHHHHHHHHHhhhhhcccc
Q 019718 218 LTVAAVCVVTQLNYLNKALDTFNAAIVSPVYYVMFTTLTIIASA-IMFKDWSGQDVSGIASEICGFITVLSGTIILHATR 296 (336)
Q Consensus 218 l~~~v~~~~~Q~~~Ln~aL~~~~~~~v~P~~~v~~~~~~i~~G~-i~f~E~~~~~~~~~~~~~~G~~~~i~GV~lLs~~~ 296 (336)
+...+++...-..+.+.++++.|.+..+|+....+....+.+-. ++|+|.. ++. -.+|.++++.||+++++++
T Consensus 51 i~lgl~~~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~l--s~~----~~iGi~lIi~GV~lv~~~~ 124 (129)
T PRK02971 51 VLLGLAGYALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETF--SLK----KTLGVACIMLGVWLINLPT 124 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCC--CHH----HHHHHHHHHHHHHHhccCC
Confidence 33444555555668999999999999999998887555444433 4899954 444 4578889999999998654
Q ss_pred C
Q 019718 297 E 297 (336)
Q Consensus 297 ~ 297 (336)
+
T Consensus 125 ~ 125 (129)
T PRK02971 125 T 125 (129)
T ss_pred C
Confidence 4
No 52
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=96.15 E-value=0.01 Score=48.72 Aligned_cols=73 Identities=12% Similarity=0.080 Sum_probs=59.2
Q ss_pred chhhhHHHHHHH-HHHHHHHHHHHHhhcchhHhhh-hhhhHHHHHHHHHHHHHhcccccccchhhHHHhhcceeEE
Q 019718 49 LLEPLWWAGMVT-MIVGEVANFVAYVYAPAVLVTP-LGALSIIIRYAVLAHFMLKERLQKMGILGCITCIVGSVVI 122 (336)
Q Consensus 49 ~~~p~W~~G~~~-~~~g~~~~~~al~~ap~slV~P-l~a~~lv~~~~~la~~~l~e~~~~~~~~G~~li~~G~~lv 122 (336)
++|+.|.+.+.. +++.+.+-..|+...|..+.=+ -.+++.+.+ .+.+.+++||+++..+++|..++++|++.+
T Consensus 27 f~~~~~~il~~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~-~l~g~~~f~E~l~~~~~~gl~LiiaGvi~L 101 (106)
T COG2076 27 FTRLWPSILTIVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGT-ALVGVLLFGESLSLIKLLGLALILAGVIGL 101 (106)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHH-HHHHHHhcCCcCCHHHHHHHHHHHHHHHHh
Confidence 345666665554 6677777778888888887655 478899999 999999999999999999999999997654
No 53
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=95.92 E-value=0.26 Score=48.92 Aligned_cols=87 Identities=17% Similarity=0.245 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHH---HHHhhcchhHhhhhhhhHHHHHHHHHHHHHhcccccccchhhHHHhhcceeEEEEecCCCCCC
Q 019718 56 AGMVTMIVGEVANF---VAYVYAPAVLVTPLGALSIIIRYAVLAHFMLKERLQKMGILGCITCIVGSVVIVIHAPQEHTP 132 (336)
Q Consensus 56 ~G~~~~~~g~~~~~---~al~~ap~slV~Pl~a~~lv~~~~~la~~~l~e~~~~~~~~G~~li~~G~~lvv~~~~~~~~~ 132 (336)
.++....+-+.+|+ .||++-.++-.+=+.+.+=+|+ +.++..+.+||++....++.++.+.|++++.....++.+.
T Consensus 161 ~sl~fc~lWF~anl~~naALa~TsVAS~TilSStSs~Ft-L~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~~~~ 239 (416)
T KOG2765|consen 161 LSLFFCPLWFLANLTSNAALAFTSVASTTILSSTSSFFT-LFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQNSD 239 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHH-HHHHHHcCcchhhHHHHHHHHHhhccEEEEEecccccccc
Confidence 44444444444444 6799999999999999999999 9999999999999999999999999998887765544332
Q ss_pred -----CCHHHHHHHhc
Q 019718 133 -----NSVQEIWALAT 143 (336)
Q Consensus 133 -----~t~~el~~~~~ 143 (336)
....+++.++.
T Consensus 240 ~~a~~~llG~llaL~s 255 (416)
T KOG2765|consen 240 LPASRPLLGNLLALLS 255 (416)
T ss_pred CCccchhHHHHHHHHH
Confidence 23445555443
No 54
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=95.67 E-value=0.099 Score=41.62 Aligned_cols=65 Identities=11% Similarity=0.052 Sum_probs=32.1
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhHHHHHHHHHHHHHHHHhcccCCCChhHHHHH
Q 019718 209 IAYPQTWFFLTVAAVCVVTQLNYLNKALDTFNAAIVSPVYYVMFTTLTIIASAIMFKDWSGQDVSGIASE 278 (336)
Q Consensus 209 f~~~~~y~ll~~~v~~~~~Q~~~Ln~aL~~~~~~~v~P~~~v~~~~~~i~~G~i~f~E~~~~~~~~~~~~ 278 (336)
++++......++ +...-.+++.+|+|+-|..+.+|+....-++...+.|..+|+|.. ++.++++.
T Consensus 26 ~~~~~~~~~~~~---~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~--s~~~~~gi 90 (93)
T PF00893_consen 26 FTQLIPTILAVV---GYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESL--SLSKWLGI 90 (93)
T ss_dssp --------HHHH---HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH----------HHHH
T ss_pred hcchhhHHHHHH---HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCC--CHHHHhhe
Confidence 556655444332 444445699999999999999999998888889999999999954 45555443
No 55
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=95.42 E-value=0.063 Score=51.32 Aligned_cols=113 Identities=20% Similarity=0.217 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHhhhccCC--Ccc-C---CC-----c----cccchhhhHH----HHHHHHHHHHHH
Q 019718 7 SKGLILAVASSAFIGSSFILKKKGLKRAGASG--TRA-G---VG-----G----YTYLLEPLWW----AGMVTMIVGEVA 67 (336)
Q Consensus 7 ~iGv~LAl~sa~~~a~G~vlqk~~~~~~~~~~--~~~-~---~~-----~----~~~~~~p~W~----~G~~~~~~g~~~ 67 (336)
..|+..++.|+++.+.-.+.-|+.. ..+... +.. + .. . ++. .++.+| .|+. ..+++.+
T Consensus 151 ~~Gi~~~l~sg~~y~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Gi~-~~ia~~~ 227 (290)
T TIGR00776 151 KKGILLLLMSTIGYLVYVVVAKAFG-VDGLSVLLPQAIGMVIGGIIFNLGHILAKPL-KKYAILLNILPGLM-WGIGNFF 227 (290)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHcC-CCcceehhHHHHHHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHH-HHHHHHH
Confidence 5699999999999988888777532 111100 000 0 00 0 111 222333 4444 4677778
Q ss_pred HHHHHh-hcchhHhhhhhhhHHHHHHHHHHHHHhcccccccch----hhHHHhhcceeEEE
Q 019718 68 NFVAYV-YAPAVLVTPLGALSIIIRYAVLAHFMLKERLQKMGI----LGCITCIVGSVVIV 123 (336)
Q Consensus 68 ~~~al~-~ap~slV~Pl~a~~lv~~~~~la~~~l~e~~~~~~~----~G~~li~~G~~lvv 123 (336)
.+.+.. ..+.+.-.++..+..+.+ .+.+-+++||+.+++++ +|+++++.|+.++.
T Consensus 228 y~~~~~~~~~~~~~~~ls~~~pvia-~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~ 287 (290)
T TIGR00776 228 YLFSAQPKVGVATSFSLSQLGVIIS-TLGGILILGEKKTKREMIAISVGIILIIIAANILG 287 (290)
T ss_pred HHHHcccccchhhHHHHHHHHHHHH-HHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHh
Confidence 888888 999999999999999999 99999999999999999 99999999987653
No 56
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=95.37 E-value=0.27 Score=40.10 Aligned_cols=70 Identities=16% Similarity=0.168 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHhhccccccchhhhHHHHHHHHHHHHHHHHhcccCCCChhHHHHHHHHHHHHHHhhhhhccccCCCC
Q 019718 223 VCVVTQLNYLNKALDTFNAAIVSPVYYVMFTTLTIIASAIMFKDWSGQDVSGIASEICGFITVLSGTIILHATREHEQ 300 (336)
Q Consensus 223 ~~~~~Q~~~Ln~aL~~~~~~~v~P~~~v~~~~~~i~~G~i~f~E~~~~~~~~~~~~~~G~~~~i~GV~lLs~~~~~~~ 300 (336)
.+...+......|++..+ ..+.| .....++++.+.|.++|+| +.++.. ..|.+++.+|++++..++...+
T Consensus 43 ~~~~~~~~~~~~a~~~~~-~~v~~-i~~~~pi~~~ll~~~~~~e--r~~~~~----~~a~~l~~~Gv~li~~~~~~~~ 112 (113)
T PF13536_consen 43 LGFGVAYLLFFYALSYAP-ALVAA-IFSLSPIFTALLSWLFFKE--RLSPRR----WLAILLILIGVILIAWSDLTGA 112 (113)
T ss_pred HHHHHHHHHHHHHHHhCc-HHHHH-HHHHHHHHHHHHHHHHhcC--CCCHHH----HHHHHHHHHHHHHHhhhhcccC
Confidence 333344556677888888 45554 4557999999999999999 445553 3566788899999987766543
No 57
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=95.35 E-value=0.12 Score=50.69 Aligned_cols=126 Identities=21% Similarity=0.229 Sum_probs=79.5
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHhHHhhhccCC--CccC-------------CCccccchhhhHHHHHHH-HHHHHH
Q 019718 3 LSENSKGLILAVASSAFIGSSFILKKKGLKRAGASG--TRAG-------------VGGYTYLLEPLWWAGMVT-MIVGEV 66 (336)
Q Consensus 3 ~~~~~iGv~LAl~sa~~~a~G~vlqk~~~~~~~~~~--~~~~-------------~~~~~~~~~p~W~~G~~~-~~~g~~ 66 (336)
.++.++|-++++.||++.|+..++|++-.++.++.. ..-| .+ ++-+++-.|-..... ++...+
T Consensus 163 ~~~~i~GDll~l~~a~lya~~nV~~E~~v~~~~~~~~lg~~Glfg~ii~~iq~~ile-~~~i~~~~w~~~~~~~~v~~~~ 241 (334)
T PF06027_consen 163 GSNPILGDLLALLGAILYAVSNVLEEKLVKKAPRVEFLGMLGLFGFIISGIQLAILE-RSGIESIHWTSQVIGLLVGYAL 241 (334)
T ss_pred CCccchhHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHhee-hhhhhccCCChhhHHHHHHHHH
Confidence 467889999999999999999999999766544200 0000 00 111111112112222 323334
Q ss_pred HHHHHHhhcchhHh------hhhh-hhHHHHHHHHHHHHHhcccccccchhhHHHhhcceeEEEEecCCCC
Q 019718 67 ANFVAYVYAPAVLV------TPLG-ALSIIIRYAVLAHFMLKERLQKMGILGCITCIVGSVVIVIHAPQEH 130 (336)
Q Consensus 67 ~~~~al~~ap~slV------~Pl~-a~~lv~~~~~la~~~l~e~~~~~~~~G~~li~~G~~lvv~~~~~~~ 130 (336)
+.+.-|...|..+- .-++ ..+-+++ +++..++.|+++++.-++|.+++++|.++.....++++
T Consensus 242 ~lf~~y~l~p~~l~~ssAt~~nLsLLTsd~~a-li~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~~~~~ 311 (334)
T PF06027_consen 242 CLFLFYSLVPIVLRMSSATFFNLSLLTSDFYA-LIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAESPEE 311 (334)
T ss_pred HHHHHHHHHHHHHHhCccceeehHHHHhhHHH-HHHHHHhcCccccHHHHHHHHHHHHHhheEEccCCccc
Confidence 56666666666432 1222 3457788 89999999999999999999999999877665444443
No 58
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=95.00 E-value=0.15 Score=43.10 Aligned_cols=112 Identities=21% Similarity=0.283 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHhhh----cc-------------------------CCCccCCCcccc-------chhh
Q 019718 9 GLILAVASSAFIGSSFILKKKGLKRA----GA-------------------------SGTRAGVGGYTY-------LLEP 52 (336)
Q Consensus 9 Gv~LAl~sa~~~a~G~vlqk~~~~~~----~~-------------------------~~~~~~~~~~~~-------~~~p 52 (336)
|.++++.|+++.++=.+++|+..++. +. +.++........ ..+.
T Consensus 1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 80 (153)
T PF03151_consen 1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF 80 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence 67899999999999999999876663 11 000000000001 1122
Q ss_pred hHHHHHHH--HHHHHHHHHHHHhhcchhHhhhhhhhHHHHHHHHHHHHHhcccccccchhhHHHhhcceeE
Q 019718 53 LWWAGMVT--MIVGEVANFVAYVYAPAVLVTPLGALSIIIRYAVLAHFMLKERLQKMGILGCITCIVGSVV 121 (336)
Q Consensus 53 ~W~~G~~~--~~~g~~~~~~al~~ap~slV~Pl~a~~lv~~~~~la~~~l~e~~~~~~~~G~~li~~G~~l 121 (336)
.++..... ..+-+..++..+....+..-+=++.+--+.+ .+++..+++|+++...+.|+.+++.|..+
T Consensus 81 ~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~-i~~s~~~f~~~~t~~~~~G~~l~~~G~~~ 150 (153)
T PF03151_consen 81 IFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILV-ILLSVIFFGEPITPLQIIGIVLALVGVLL 150 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHH-HHHHhhhcCCcCCHHHHHHHHHHHHHHhe
Confidence 22221111 2233445566677777778888899999999 99999999999999999999999999753
No 59
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=94.76 E-value=0.48 Score=45.36 Aligned_cols=79 Identities=13% Similarity=0.206 Sum_probs=57.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhc-chhHhhhhhhhHHHHHHHHHHHHHhcccccccchhhHHHhhcceeEEEEecCCCC
Q 019718 52 PLWWAGMVTMIVGEVANFVAYVYA-PAVLVTPLGALSIIIRYAVLAHFMLKERLQKMGILGCITCIVGSVVIVIHAPQEH 130 (336)
Q Consensus 52 p~W~~G~~~~~~g~~~~~~al~~a-p~slV~Pl~a~~lv~~~~~la~~~l~e~~~~~~~~G~~li~~G~~lvv~~~~~~~ 130 (336)
+.|..=..++..-++.|=.|+.|. |.-+=.=+=+.+++.| +.++..++|+|-+.+++..++++.+|+++.-.++.++.
T Consensus 65 k~Y~i~V~mFF~vnv~NN~al~f~I~~PlHiIfRsgsll~n-M~~g~il~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~d~ 143 (330)
T KOG1583|consen 65 KDYAITVAMFFIVNVTNNYALKFNIPMPLHIIFRSGSLLAN-MILGWILLGKRYSLRQYSSVLMITIGIIICTLFSSKDG 143 (330)
T ss_pred hhhheehheeeeeeeeccceeeecccceEEEEEecCcHHHH-HHHHHHhccceeehhhhhhHHhhhhhheeEEeecCcch
Confidence 445554555555566676777664 2222222456788888 99999999999999999999999999988877776655
Q ss_pred C
Q 019718 131 T 131 (336)
Q Consensus 131 ~ 131 (336)
.
T Consensus 144 ~ 144 (330)
T KOG1583|consen 144 R 144 (330)
T ss_pred h
Confidence 3
No 60
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=94.18 E-value=0.31 Score=46.50 Aligned_cols=68 Identities=10% Similarity=0.225 Sum_probs=53.5
Q ss_pred HHHhhccccccchhhhHHHHHHHHHHHHHHHHhcccCCCChhHHHHHHHHHHHHHHhhhhhccccCCCCC
Q 019718 232 LNKALDTFNAAIVSPVYYVMFTTLTIIASAIMFKDWSGQDVSGIASEICGFITVLSGTIILHATREHEQT 301 (336)
Q Consensus 232 Ln~aL~~~~~~~v~P~~~v~~~~~~i~~G~i~f~E~~~~~~~~~~~~~~G~~~~i~GV~lLs~~~~~~~~ 301 (336)
.=++.+.-.-+...|+-+..--+.+.+.|.++|+||... .++..=.+++++++.|+++-+.+++.++.
T Consensus 62 qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~--~~~~~G~~Al~liiiGv~lts~~~~~~~~ 129 (269)
T PF06800_consen 62 QFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTT--TQKIIGFLALVLIIIGVILTSYQDKKSDK 129 (269)
T ss_pred HHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCc--chHHHHHHHHHHHHHHHHHhccccccccc
Confidence 334566666678899999999999999999999999864 46666667889999999987776666553
No 61
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=93.58 E-value=0.25 Score=39.50 Aligned_cols=69 Identities=19% Similarity=0.284 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHHHhhccccccchhhhHHHHHHHHHHHHHHHHhcccCCCChhHHHHHHHHHHHHHHhhhhhc
Q 019718 218 LTVAAVCVVTQLNYLNKALDTFNAAIVSPVYYVMFTTLTIIASAIMFKDWSGQDVSGIASEICGFITVLSGTIILH 293 (336)
Q Consensus 218 l~~~v~~~~~Q~~~Ln~aL~~~~~~~v~P~~~v~~~~~~i~~G~i~f~E~~~~~~~~~~~~~~G~~~~i~GV~lLs 293 (336)
+.....+...-....+.++++-+++.+.++.+ ..++.+.+.+.++++|.. ++. ...|.++++.|+++++
T Consensus 57 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~pv~~~i~~~~~~~e~~--~~~----~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 57 LFLGLLGTALAYLLYFYALKYISASIVSILQY-LSPVFAAILGWLFLGERP--SWR----QIIGIILIIIGVVLIS 125 (126)
T ss_pred hHhhccceehHHHHHHHHHHhcchhHHHHHHH-HHHHHHHHHHHHHcCCCC--CHH----HHHHHHHHHHHHHHHH
Confidence 33333444445667888999999999888877 789999999999999954 444 3455666777776653
No 62
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=93.50 E-value=0.18 Score=47.98 Aligned_cols=117 Identities=15% Similarity=0.179 Sum_probs=76.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhHHhhhccCCCcc-------C----------CCccccch------------hhhHH
Q 019718 5 ENSKGLILAVASSAFIGSSFILKKKGLKRAGASGTRA-------G----------VGGYTYLL------------EPLWW 55 (336)
Q Consensus 5 ~~~iGv~LAl~sa~~~a~G~vlqk~~~~~~~~~~~~~-------~----------~~~~~~~~------------~p~W~ 55 (336)
...+|..+++.|+++.++..++.||..++.+.++... + .+..+... ...|.
T Consensus 142 ~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (302)
T TIGR00817 142 FNWAGFLSAMISNITFVSRNIFSKKAMTIKSLDKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYT 221 (302)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHH
Confidence 3567999999999999999999888544111110000 0 00000000 01121
Q ss_pred HHHH----HHHHHHHHHHHHHhhcchhHhhhhhhhHHHHHHHHHHHHHhcccccccchhhHHHhhcceeEE
Q 019718 56 AGMV----TMIVGEVANFVAYVYAPAVLVTPLGALSIIIRYAVLAHFMLKERLQKMGILGCITCIVGSVVI 122 (336)
Q Consensus 56 ~G~~----~~~~g~~~~~~al~~ap~slV~Pl~a~~lv~~~~~la~~~l~e~~~~~~~~G~~li~~G~~lv 122 (336)
.+.. ++...+..++.++...+.+...-.+.+.-+++ .+++.++++|+++..++.|.++++.|+.+.
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~-~~~~~~~lge~lt~~~~~G~~lil~Gv~l~ 291 (302)
T TIGR00817 222 VSLVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVV-IVVSILFFGTKISPQQVFGTGIAIAGVFLY 291 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhhe-eeeehhhcCCCCchhHHHHHHHHHHHHHHH
Confidence 1211 11122234456777888888888888999999 999999999999999999999999997653
No 63
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=93.44 E-value=0.59 Score=44.21 Aligned_cols=117 Identities=19% Similarity=0.182 Sum_probs=84.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhHHhhhccCCCcc---------------C-CCccccchhhh-HHHHHHHHH----H
Q 019718 5 ENSKGLILAVASSAFIGSSFILKKKGLKRAGASGTRA---------------G-VGGYTYLLEPL-WWAGMVTMI----V 63 (336)
Q Consensus 5 ~~~iGv~LAl~sa~~~a~G~vlqk~~~~~~~~~~~~~---------------~-~~~~~~~~~p~-W~~G~~~~~----~ 63 (336)
-...|+.+|+.+..|-+.=.+.-||.-+..+ +++. | ...-+-+.+|. -..++..-+ +
T Consensus 145 lDp~Gv~~Al~AG~~Wa~YIv~G~r~g~~~~--g~~g~a~gm~vAaviv~Pig~~~ag~~l~~p~ll~laLgvavlSSal 222 (292)
T COG5006 145 LDPVGVALALGAGACWALYIVLGQRAGRAEH--GTAGVAVGMLVAALIVLPIGAAQAGPALFSPSLLPLALGVAVLSSAL 222 (292)
T ss_pred CCHHHHHHHHHHhHHHHHHHHHcchhcccCC--CchHHHHHHHHHHHHHhhhhhhhcchhhcChHHHHHHHHHHHHhccc
Confidence 3568999999999998877777666543211 1100 0 00122333443 334443333 4
Q ss_pred HHHHHHHHHhhcchhHhhhhhhhHHHHHHHHHHHHHhcccccccchhhHHHhhcceeEEEE
Q 019718 64 GEVANFVAYVYAPAVLVTPLGALSIIIRYAVLAHFMLKERLQKMGILGCITCIVGSVVIVI 124 (336)
Q Consensus 64 g~~~~~~al~~ap~slV~Pl~a~~lv~~~~~la~~~l~e~~~~~~~~G~~li~~G~~lvv~ 124 (336)
=+.+..+|+.-.|...-.-+.++.-.+. .+.+..+|+|++|..+|.|+++++.++.-...
T Consensus 223 PYsLEmiAL~rlp~~~F~~LlSLePa~a-Al~G~i~L~e~ls~~qwlaI~~ViaAsaG~~l 282 (292)
T COG5006 223 PYSLEMIALRRLPARTFGTLLSLEPALA-ALSGLIFLGETLTLIQWLAIAAVIAASAGSTL 282 (292)
T ss_pred chHHHHHHHhhCChhHHHHHHHhhHHHH-HHHHHHHhcCCCCHHHHHHHHHHHHHHhcccc
Confidence 4458899999999999999999999999 99999999999999999999999998765544
No 64
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=93.37 E-value=0.28 Score=40.80 Aligned_cols=101 Identities=12% Similarity=0.090 Sum_probs=64.7
Q ss_pred HHhhhhHHHHHHHHHHHHHHHh------hc-CCcccchhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhHHHHHH
Q 019718 181 CSLMGSLTVVSIKAIGIAIKLT------LD-GISQIAYPQTWFFLTVAAVCVVTQLNYLNKALDTFNAAIVSPVYYVMFT 253 (336)
Q Consensus 181 sgllgg~tvl~~K~v~~~l~~~------~~-g~~~f~~~~~y~ll~~~v~~~~~Q~~~Ln~aL~~~~~~~v~P~~~v~~~ 253 (336)
.|++.|.|..+.|.-+.-.... .+ -...+.+|+..+-++.-..+.+ ...-.|.+.|-+..+|+.+..--
T Consensus 4 Vg~~WG~Tnpfik~g~~~~~~~~~~~~~~~~~~~Ll~n~~y~ipf~lNq~GSv----~f~~~L~~~dlSlavPi~Nsl~f 79 (113)
T PF10639_consen 4 VGILWGCTNPFIKRGSSGLEKVKASLQLLQEIKFLLLNPKYIIPFLLNQSGSV----LFFLLLGSADLSLAVPIANSLAF 79 (113)
T ss_pred ehHHhcCchHHHHHHHhhcCCccchHHHHHHHHHHHHhHHHHHHHHHHHHHHH----HHHHHHhcCCceeeehHHhHHHH
Confidence 3555566666666544321100 00 0123566776665555555555 45667888999999999988888
Q ss_pred HHHHHHHHHHhcccCCCChhHHHHHHHHHHHHHHhhhh
Q 019718 254 TLTIIASAIMFKDWSGQDVSGIASEICGFITVLSGTII 291 (336)
Q Consensus 254 ~~~i~~G~i~f~E~~~~~~~~~~~~~~G~~~~i~GV~l 291 (336)
+++.+.|..+.+|... +. -.+|..++++|+.+
T Consensus 80 vfT~l~g~~lge~~~~--~~----~~~G~~Li~~Gv~L 111 (113)
T PF10639_consen 80 VFTALTGWLLGEEVIS--RR----TWLGMALILAGVAL 111 (113)
T ss_pred HHHHHHHHHhcCcccc--hh----HHHHHHHHHcCeee
Confidence 8899999877777543 22 34777788888765
No 65
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=92.99 E-value=0.61 Score=44.81 Aligned_cols=71 Identities=17% Similarity=0.220 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcchhHhhhhhhhHHHHHHHHHHHHHhcccccccchhhHHHhhcceeEEEEe
Q 019718 54 WWAGMVTMIVGEVANFVAYVYAPAVLVTPLGALSIIIRYAVLAHFMLKERLQKMGILGCITCIVGSVVIVIH 125 (336)
Q Consensus 54 W~~G~~~~~~g~~~~~~al~~ap~slV~Pl~a~~lv~~~~~la~~~l~e~~~~~~~~G~~li~~G~~lvv~~ 125 (336)
...=.++.+.|.....++|.+..++--|-+-+.-++|+ -+++.-+|+++++.+.|.|+..+.+|.+.+...
T Consensus 89 fl~Pal~Di~gsslm~vgL~lTsASsfQMlRGaviIFv-glfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~ 159 (372)
T KOG3912|consen 89 FLPPALCDIAGSSLMYVGLNLTSASSFQMLRGAVIIFV-GLFSTMFLNRTITGRQWLGILFVSLGLVIVGSL 159 (372)
T ss_pred ecChHHHHHhhhHHHHHHHHHhhHHHHHHhhcchhhhh-HHHHHHHHhcccchhhHHHHHHHHhhhheeeee
Confidence 33345788899999999999999999999999999999 999999999999999999999999998777553
No 66
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=92.02 E-value=0.53 Score=44.66 Aligned_cols=58 Identities=34% Similarity=0.535 Sum_probs=50.1
Q ss_pred HHHhhcchhHhhhhhhhHHHHHHHHHHHHHhcccccccchhhHHHhhcceeEEEEecCC
Q 019718 70 VAYVYAPAVLVTPLGALSIIIRYAVLAHFMLKERLQKMGILGCITCIVGSVVIVIHAPQ 128 (336)
Q Consensus 70 ~al~~ap~slV~Pl~a~~lv~~~~~la~~~l~e~~~~~~~~G~~li~~G~~lvv~~~~~ 128 (336)
-|+.+....-++-|-.-+++-- .+++.++||.|-+...+.|++.|+.|+++++...-+
T Consensus 97 ~AyQyTsmtSi~lLDcwaip~v-~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~sDV~ 154 (336)
T KOG2766|consen 97 KAYQYTSMTSIMLLDCWAIPCV-LVLSWFFLKTRYRLMKISGVVICIVGVVMVVFSDVH 154 (336)
T ss_pred eehhhcchHHHHHHHHhhhHHH-HHHHHHHHHHHHhhheeeeEEeEecceEEEEEeeec
Confidence 4677777888888889999999 999999999999999999999999999888654433
No 67
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=91.87 E-value=0.8 Score=41.60 Aligned_cols=115 Identities=17% Similarity=0.153 Sum_probs=79.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhHHhhhccC--------------------CCccCC--Cccc-cch-hhhHHHHHHH
Q 019718 5 ENSKGLILAVASSAFIGSSFILKKKGLKRAGAS--------------------GTRAGV--GGYT-YLL-EPLWWAGMVT 60 (336)
Q Consensus 5 ~~~iGv~LAl~sa~~~a~G~vlqk~~~~~~~~~--------------------~~~~~~--~~~~-~~~-~p~W~~G~~~ 60 (336)
+..+|+.+.+.+.++.+..-+.|+|..++.+.. ..+++. ...+ ... .+.+|.=.++
T Consensus 82 ~~~~g~~~~l~a~~~~~~~~~y~e~~~k~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (222)
T TIGR00803 82 NPVVGLSAVLSALLSSGFAGVYFEKILKDGDTMFWSRNLQLPLFGLFSTFSVLLWSDGTLISNFGFFIGYPTAVWIVGLL 161 (222)
T ss_pred cHHHHHHHHHHHHHHHhhhHHHHHHcccCCCCchHHHHHHHHHHHHHHHHHHHhhcccchhhccCcccCCchHHHHHHHH
Confidence 456677777777777888889998875542210 000000 0011 111 2233333344
Q ss_pred HHHHHHHHHHHHhhcchhHhhhhhhhHHHHHHHHHHHHHhcccccccchhhHHHhhccee
Q 019718 61 MIVGEVANFVAYVYAPAVLVTPLGALSIIIRYAVLAHFMLKERLQKMGILGCITCIVGSV 120 (336)
Q Consensus 61 ~~~g~~~~~~al~~ap~slV~Pl~a~~lv~~~~~la~~~l~e~~~~~~~~G~~li~~G~~ 120 (336)
...|..+-...+.+++.....=...+..+++ .+++.++.+|+++...|.|+.++..|+.
T Consensus 162 ~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s-~lls~~~f~~~ls~~~~~g~~lV~~~~~ 220 (222)
T TIGR00803 162 NVGGGLCIGGVVRYADNTTKSFVTALSIILS-TLASVRLFDAKISSTFYLGAILVFLATF 220 (222)
T ss_pred HHhcCceeeehhHHhHHHHHHHHHHHHHHHH-HHHHHHHhcCCccHHHHHHHHHHHeeeE
Confidence 5566666667788888889999999999999 9999999999999999999999998864
No 68
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=90.76 E-value=16 Score=34.91 Aligned_cols=194 Identities=10% Similarity=0.048 Sum_probs=96.8
Q ss_pred HHHHHHhhcchhHhhhhhhhHHHHHHHHHHHHHhcccccccchhhHHHhhcceeEEEEecCCCCCCCCHHHHHHHhcChh
Q 019718 67 ANFVAYVYAPAVLVTPLGALSIIIRYAVLAHFMLKERLQKMGILGCITCIVGSVVIVIHAPQEHTPNSVQEIWALATQPD 146 (336)
Q Consensus 67 ~~~~al~~ap~slV~Pl~a~~lv~~~~~la~~~l~e~~~~~~~~G~~li~~G~~lvv~~~~~~~~~~t~~el~~~~~~~~ 146 (336)
+...++...|+-+...+--.+-+.- ..++. + +.+|.+.+.+.+.|..++...++..++.....
T Consensus 87 ~FY~si~riPlGiAVAiEF~GPL~v-A~~~s----R--r~~d~vwvaLAvlGi~lL~p~~~~~~~lDp~G---------- 149 (292)
T COG5006 87 LFYLSIERIPLGIAVAIEFTGPLAV-ALLSS----R--RLRDFVWVALAVLGIWLLLPLGQSVWSLDPVG---------- 149 (292)
T ss_pred HHHHHHHhccchhhhhhhhccHHHH-HHHhc----c--chhhHHHHHHHHHHHHhheeccCCcCcCCHHH----------
Confidence 4446777788777665555554444 33322 2 34677788888999877765554444332221
Q ss_pred HHHHHHHHHHHHHHHhh-eecccCCCcchhhHHHHHHhhhhHHHHHHHHHHHHHHHhhcCCcccchhHHHHH-HHHHHHH
Q 019718 147 FLIYVAATVSVVLALVL-HFEPRCGQTNILVYLGICSLMGSLTVVSIKAIGIAIKLTLDGISQIAYPQTWFF-LTVAAVC 224 (336)
Q Consensus 147 fl~y~~~~~~~~~~li~-~~~~~~g~~~~~~y~~isgllgg~tvl~~K~v~~~l~~~~~g~~~f~~~~~y~l-l~~~v~~ 224 (336)
..|...... +.-+| ...+|-|+...---+...|..-+....+--++ .+....+.+|..-.. +.+.+.+
T Consensus 150 -v~~Al~AG~--~Wa~YIv~G~r~g~~~~g~~g~a~gm~vAaviv~Pig~-------~~ag~~l~~p~ll~laLgvavlS 219 (292)
T COG5006 150 -VALALGAGA--CWALYIVLGQRAGRAEHGTAGVAVGMLVAALIVLPIGA-------AQAGPALFSPSLLPLALGVAVLS 219 (292)
T ss_pred -HHHHHHHhH--HHHHHHHHcchhcccCCCchHHHHHHHHHHHHHhhhhh-------hhcchhhcChHHHHHHHHHHHHh
Confidence 112211111 11112 12344332110001111111111111111111 122345666665433 3334444
Q ss_pred HHHHHHHHHHhhccccccchhhhHHHHHHHHHHHHHHHHhcccCCCChhHHHHHHHHHHHHHHhhhh
Q 019718 225 VVTQLNYLNKALDTFNAAIVSPVYYVMFTTLTIIASAIMFKDWSGQDVSGIASEICGFITVLSGTII 291 (336)
Q Consensus 225 ~~~Q~~~Ln~aL~~~~~~~v~P~~~v~~~~~~i~~G~i~f~E~~~~~~~~~~~~~~G~~~~i~GV~l 291 (336)
...--..-.-||++-++.. .-+..+..|..+-+.|.++++|.. ++.||+...+= +....|+.+
T Consensus 220 SalPYsLEmiAL~rlp~~~-F~~LlSLePa~aAl~G~i~L~e~l--s~~qwlaI~~V-iaAsaG~~l 282 (292)
T COG5006 220 SALPYSLEMIALRRLPART-FGTLLSLEPALAALSGLIFLGETL--TLIQWLAIAAV-IAASAGSTL 282 (292)
T ss_pred cccchHHHHHHHhhCChhH-HHHHHHhhHHHHHHHHHHHhcCCC--CHHHHHHHHHH-HHHHhcccc
Confidence 4444444445898877655 455668899999999999999954 57787665543 234445544
No 69
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=90.03 E-value=0.4 Score=45.22 Aligned_cols=225 Identities=13% Similarity=0.183 Sum_probs=132.8
Q ss_pred ccchhhhHHHHHHH---HHHHHHHHHHHHhhcchhHhhhhh-hhHHHHHHHHHHHHHhcccccccch----hhHHHhhcc
Q 019718 47 TYLLEPLWWAGMVT---MIVGEVANFVAYVYAPAVLVTPLG-ALSIIIRYAVLAHFMLKERLQKMGI----LGCITCIVG 118 (336)
Q Consensus 47 ~~~~~p~W~~G~~~---~~~g~~~~~~al~~ap~slV~Pl~-a~~lv~~~~~la~~~l~e~~~~~~~----~G~~li~~G 118 (336)
+.+.-..|..|+.. -.+|+..|+-|......|--.|+. +.+++-+ .+++-+.++|=-+.... .+.++++.|
T Consensus 52 p~~T~~~~iv~~isG~~Ws~GQ~~Qfka~~~iGVSkamPiStG~QLVg~-sL~gV~~f~EW~t~~~~IlG~iAliliviG 130 (288)
T COG4975 52 PELTLTIFIVGFISGAFWSFGQANQFKAIQLIGVSKAMPISTGMQLVGT-SLFGVFVFHEWTTPTQIILGFIALILIVIG 130 (288)
T ss_pred CccchhhHHHHHHhhhHhhhhhhhhhhheeeeeeeccccccchhhHhhc-eeeeEEEEeccCcchhHHHHHHHHHHHHHh
Confidence 44445667777755 447888888999999999999996 6789999 99999999998776653 477888899
Q ss_pred eeEEEEecCCCCCCCCHHHHHHHhcChhHHHHHHHHHHHHHHHhheecccCCCcchhhHHHHHHhhhhHHHHHHHHHHHH
Q 019718 119 SVVIVIHAPQEHTPNSVQEIWALATQPDFLIYVAATVSVVLALVLHFEPRCGQTNILVYLGICSLMGSLTVVSIKAIGIA 198 (336)
Q Consensus 119 ~~lvv~~~~~~~~~~t~~el~~~~~~~~fl~y~~~~~~~~~~li~~~~~~~g~~~~~~y~~isgllgg~tvl~~K~v~~~ 198 (336)
..+-..-.+.+.+..+.+.+.+-.. .+.|. -+.+..|.+.++. +. +.|.++++-++++..
T Consensus 131 ~~lTs~~~~~nk~~~~~~n~kkgi~---~L~iS-----t~GYv~yvvl~~~-----f~-------v~g~saiLPqAiGMv 190 (288)
T COG4975 131 IYLTSKQDRNNKEEENPSNLKKGIV---ILLIS-----TLGYVGYVVLFQL-----FD-------VDGLSAILPQAIGMV 190 (288)
T ss_pred heEeeeeccccccccChHhhhhhee---eeeee-----ccceeeeEeeecc-----cc-------ccchhhhhHHHHHHH
Confidence 8777665554444445554443111 00000 0011111121221 00 556677777776664
Q ss_pred HHHh---hcCCcccchhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhHHHHHHHHHHHHHHHHhcccCCCChhHH
Q 019718 199 IKLT---LDGISQIAYPQTWFFLTVAAVCVVTQLNYLNKALDTFNAAIVSPVYYVMFTTLTIIASAIMFKDWSGQDVSGI 275 (336)
Q Consensus 199 l~~~---~~g~~~f~~~~~y~ll~~~v~~~~~Q~~~Ln~aL~~~~~~~v~P~~~v~~~~~~i~~G~i~f~E~~~~~~~~~ 275 (336)
+-.. ..+.+...+-.+|.-+...+.=+.--+.++-.+=+.+-++- ..+-+.. .+.+.++|+.+++|.. +..++
T Consensus 191 ~~ali~~~~~~~~~~~K~t~~nii~G~~Wa~GNl~ml~a~~~~GvAt~-FSlSQlg-ViisTiGGIl~L~ekK--tkkEm 266 (288)
T COG4975 191 IGALILGFFKMEKRFNKYTWLNIIPGLIWAIGNLFMLLAAQKVGVATS-FSLSQLG-VIISTIGGILFLGEKK--TKKEM 266 (288)
T ss_pred HHHHHHhhcccccchHHHHHHHHhhHHHHHhhHHHHHHhhhhhceeee-eeHhhhe-eeeeecceEEEEeccC--chhhh
Confidence 4211 22334455556666554444333322223222112222210 0011111 1236678999999965 58899
Q ss_pred HHHHHHHHHHHHhhhhhcccc
Q 019718 276 ASEICGFITVLSGTIILHATR 296 (336)
Q Consensus 276 ~~~~~G~~~~i~GV~lLs~~~ 296 (336)
.....|+++++.|..+|+--|
T Consensus 267 ~~v~iGiilivvgai~lg~~K 287 (288)
T COG4975 267 VYVIIGIILIVVGAILLGIAK 287 (288)
T ss_pred hhhhhhHHHHHHHhhhhheec
Confidence 999999999999999987544
No 70
>PRK02237 hypothetical protein; Provisional
Probab=89.41 E-value=1.2 Score=36.64 Aligned_cols=48 Identities=21% Similarity=0.368 Sum_probs=39.6
Q ss_pred HhhhhhhhHHHHHHHHHHHHHhcccccccchhhHHHhhcceeEEEEecCC
Q 019718 79 LVTPLGALSIIIRYAVLAHFMLKERLQKMGILGCITCIVGSVVIVIHAPQ 128 (336)
Q Consensus 79 lV~Pl~a~~lv~~~~~la~~~l~e~~~~~~~~G~~li~~G~~lvv~~~~~ 128 (336)
+-+.-|++-++.+ .+-....-|+|++++|++|.++|.+|+.++ .++|.
T Consensus 61 vYAAYGGvyI~~S-l~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI-~~~pR 108 (109)
T PRK02237 61 VYAAYGGVYVAGS-LLWLWVVDGVRPDRWDWIGAAICLVGMAVI-MYAPR 108 (109)
T ss_pred HHHHhhhHHHHHH-HHHHHHhcCcCCChhHHHhHHHHHHhHHHh-eecCC
Confidence 4455677888888 889999999999999999999999998655 35554
No 71
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=89.21 E-value=2 Score=35.12 Aligned_cols=49 Identities=16% Similarity=0.358 Sum_probs=40.2
Q ss_pred HhhhhhhhHHHHHHHHHHHHHhcccccccchhhHHHhhcceeEEEEecCCC
Q 019718 79 LVTPLGALSIIIRYAVLAHFMLKERLQKMGILGCITCIVGSVVIVIHAPQE 129 (336)
Q Consensus 79 lV~Pl~a~~lv~~~~~la~~~l~e~~~~~~~~G~~li~~G~~lvv~~~~~~ 129 (336)
+-+.-|.+-++.+ ++-....-|.+++++||.|.+.|.+|+.+ +.++|..
T Consensus 60 vYAAYGGvyI~~s-L~W~~~Vdg~~pdr~D~~Ga~icl~G~~v-il~~pR~ 108 (109)
T COG1742 60 VYAAYGGVYIAAS-LAWLWVVDGVRPDRYDWIGAAICLAGVAV-ILFGPRG 108 (109)
T ss_pred HHHHhcchHHHHH-HHHHHHHcCcCCcHHHhhhHHHHHhceee-eEeCCCC
Confidence 4566788888889 88899999999999999999999999554 4556643
No 72
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=87.97 E-value=3.1 Score=40.78 Aligned_cols=50 Identities=16% Similarity=0.275 Sum_probs=40.6
Q ss_pred HHhhcchhHhhhhhhhHHHHHHHHHHHHHhcccccccchhhHHHhhcceeE
Q 019718 71 AYVYAPAVLVTPLGALSIIIRYAVLAHFMLKERLQKMGILGCITCIVGSVV 121 (336)
Q Consensus 71 al~~ap~slV~Pl~a~~lv~~~~~la~~~l~e~~~~~~~~G~~li~~G~~l 121 (336)
++.-.++.-..=.+.+.-++. .+++.++++|+++...++|+++++.|+.+
T Consensus 296 ~l~~~s~~t~sv~~~lk~V~~-iv~s~l~~ge~lt~~~~iG~~lii~Gv~l 345 (350)
T PTZ00343 296 CLGKVNQVTHAVANTLKRVVI-IVSSIIIFQTQVTLLGYLGMAVAILGALL 345 (350)
T ss_pred HHhccchhHHHHHHHHHHHHH-hhhhHHHhCCCCchHhHHHHHHHHHHHHH
Confidence 455555555566666777888 89999999999999999999999999754
No 73
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=87.85 E-value=0.82 Score=37.61 Aligned_cols=76 Identities=18% Similarity=0.281 Sum_probs=62.5
Q ss_pred ccccchhhhHHHHHHHHHHHHHHHHHHHhhcchhHhhhhh-hhHHHHHHHHHHHHHhccccc-ccchhhHHHhhcceeEE
Q 019718 45 GYTYLLEPLWWAGMVTMIVGEVANFVAYVYAPAVLVTPLG-ALSIIIRYAVLAHFMLKERLQ-KMGILGCITCIVGSVVI 122 (336)
Q Consensus 45 ~~~~~~~p~W~~G~~~~~~g~~~~~~al~~ap~slV~Pl~-a~~lv~~~~~la~~~l~e~~~-~~~~~G~~li~~G~~lv 122 (336)
.+.++.|...|+=+++--.|+...+.-|+-+|.++-.|+. ++++.|+ .+++..+ +|+.. ++-..|+.+++.|+.+.
T Consensus 46 ~~tl~l~w~Y~iPFllNqcgSaly~~tLa~a~islavpv~nsltfaft-a~~G~~L-GE~~~g~~a~lGt~liv~Gi~Lc 123 (125)
T KOG4831|consen 46 MKTLFLNWEYLIPFLLNQCGSALYYLTLASAPISLAVPVTNSLTFAFT-AIFGKAL-GEETQGGLALLGTSLIVFGIWLC 123 (125)
T ss_pred HHHHHHhHHHHHHHHHHHhhHHHHHHHHhcCCceeeeeecchhHHHHH-HHHHHHh-ccccccceeehhhhHHhhhhhhe
Confidence 4566778888999999889999999999999999999985 6788888 8877665 66655 55589999999997654
No 74
>PRK13499 rhamnose-proton symporter; Provisional
Probab=83.22 E-value=6.9 Score=38.69 Aligned_cols=61 Identities=10% Similarity=0.129 Sum_probs=48.3
Q ss_pred HhhccccccchhhhHHHHHHHHHHHHHHHHhcccCC-CChhHHHHHHHHHHHHHHhhhhhcc
Q 019718 234 KALDTFNAAIVSPVYYVMFTTLTIIASAIMFKDWSG-QDVSGIASEICGFITVLSGTIILHA 294 (336)
Q Consensus 234 ~aL~~~~~~~v~P~~~v~~~~~~i~~G~i~f~E~~~-~~~~~~~~~~~G~~~~i~GV~lLs~ 294 (336)
++.|.--.+.-.|+..-.-.+.+.+.+.++++||.+ .+..+......|+++++.|+.+-+.
T Consensus 92 ~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~ 153 (345)
T PRK13499 92 LTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGR 153 (345)
T ss_pred HHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHH
Confidence 455555566778999888899999999999999972 1234455588999999999999887
No 75
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=80.90 E-value=49 Score=32.74 Aligned_cols=280 Identities=14% Similarity=0.204 Sum_probs=146.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhHHh---h-------------hcc-----CCCccCCCccccch----hhhHHHHH-
Q 019718 5 ENSKGLILAVASSAFIGSSFILKKKGLK---R-------------AGA-----SGTRAGVGGYTYLL----EPLWWAGM- 58 (336)
Q Consensus 5 ~~~iGv~LAl~sa~~~a~G~vlqk~~~~---~-------------~~~-----~~~~~~~~~~~~~~----~p~W~~G~- 58 (336)
...+|++.-.+++++.+.=.+=.||-.. | .|- .-| +..++++ +-.|+.-+
T Consensus 4 ~ii~Gii~h~iGg~~~~sfy~P~kkvk~WsWEs~Wlv~gi~swli~P~~~a~l~ip----~~~~i~~~~~~~~l~~~~l~ 79 (344)
T PF06379_consen 4 AIILGIIFHAIGGFASGSFYVPFKKVKGWSWESYWLVQGIFSWLIVPWLWALLAIP----DFFSIYSATPASTLFWTFLF 79 (344)
T ss_pred hHHHHHHHHHHHHHHhhhhccchhhcCCccHHHHHHHHHHHHHHHHHHHHHHHhCC----cHHHHHHhCChhHHHHHHHH
Confidence 3567999999999998877776666211 0 000 000 1111221 12222221
Q ss_pred -HHHHHHHHHHHHHHhhcchhHhhhhh-hhHHHHHHHHHHHHHhcc-------cccccchhhHHHhhcceeEEEEecCCC
Q 019718 59 -VTMIVGEVANFVAYVYAPAVLVTPLG-ALSIIIRYAVLAHFMLKE-------RLQKMGILGCITCIVGSVVIVIHAPQE 129 (336)
Q Consensus 59 -~~~~~g~~~~~~al~~ap~slV~Pl~-a~~lv~~~~~la~~~l~e-------~~~~~~~~G~~li~~G~~lvv~~~~~~ 129 (336)
++-.+|.+..=.+..+.-.|+-+.+. ++..++. .++-+.+.++ +-.+..++|++++.+|+.++...+...
T Consensus 80 G~lWGIGgltfGl~mryLGvSLG~sI~lGl~~~~G-Tlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~AG~~K 158 (344)
T PF06379_consen 80 GVLWGIGGLTFGLAMRYLGVSLGQSIALGLCAVFG-TLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGKAGSMK 158 (344)
T ss_pred HHHHhcchhhHhHHHHHHhHHHHHHHHHHHHHHHh-hchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhHHHHhh
Confidence 11224444444566666666666543 3445555 5665665443 223455789999999988876655433
Q ss_pred CCCCCHHHHHHHhcChhHHHHHHHHHHHHHHHhhe---ecc------cCCCcchhhHHHH----HHhhhhHHHHHHHHHH
Q 019718 130 HTPNSVQEIWALATQPDFLIYVAATVSVVLALVLH---FEP------RCGQTNILVYLGI----CSLMGSLTVVSIKAIG 196 (336)
Q Consensus 130 ~~~~t~~el~~~~~~~~fl~y~~~~~~~~~~li~~---~~~------~~g~~~~~~y~~i----sgllgg~tvl~~K~v~ 196 (336)
++..+.+. .+.--+...+ -.++..++...+.+- -.| +.|.. ..|... --+.||++.-+.=++-
T Consensus 159 e~~~~~~~-~efn~~kGl~-iAv~sGv~Sa~fn~g~~ag~pi~~~a~a~G~~--~l~~~l~~~vvv~~GGf~tN~~yc~~ 234 (344)
T PF06379_consen 159 EKELGEEA-KEFNFKKGLI-IAVLSGVMSACFNFGLDAGKPIHEAAVAAGVN--PLYANLPVYVVVLWGGFITNLIYCLI 234 (344)
T ss_pred hhhhccch-hhhhhhhhHH-HHHHHHHHHHHHHHHHHcCCcHHHHHHHcCCC--cHHHhCchhhhhhhhHHHHHHHHHHH
Confidence 33222221 1110111111 111222222221111 111 12211 122111 1145566655555544
Q ss_pred HHHHH-hhc--CCcccchh---HHHHHHHHHHHHHHHHHHHHHHhhcccc-c--cchhhhHHHHHHHHHHHHHHHHhccc
Q 019718 197 IAIKL-TLD--GISQIAYP---QTWFFLTVAAVCVVTQLNYLNKALDTFN-A--AIVSPVYYVMFTTLTIIASAIMFKDW 267 (336)
Q Consensus 197 ~~l~~-~~~--g~~~f~~~---~~y~ll~~~v~~~~~Q~~~Ln~aL~~~~-~--~~v~P~~~v~~~~~~i~~G~i~f~E~ 267 (336)
...+. +.+ ++.....+ .-|++.+..-+.=..|..+.-.+-..-. . ...-++...+..+++-+.|. ..+||
T Consensus 235 ~l~~~k~~s~~~d~~~~~~~~~~N~~~~aLaG~lWy~qfffYg~G~s~lg~~~~~~sW~i~ma~~vl~snvwGl-~lkEW 313 (344)
T PF06379_consen 235 LLAKNKNWSWKGDYSVAKPPLLKNYLFCALAGVLWYSQFFFYGMGESKLGASGPFSSWAIHMALIVLFSNVWGL-ILKEW 313 (344)
T ss_pred HHhhcCCCccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHHHH-HHHHh
Confidence 43321 121 12111122 2266666666667788888887654322 2 45677888888888888775 67999
Q ss_pred CCCChhHHHHHHHHHHHHHHhhhhhcc
Q 019718 268 SGQDVSGIASEICGFITVLSGTIILHA 294 (336)
Q Consensus 268 ~~~~~~~~~~~~~G~~~~i~GV~lLs~ 294 (336)
.+.+......+.+|+++++..++++.-
T Consensus 314 Kg~s~kt~~vl~~G~~vlI~s~~ivG~ 340 (344)
T PF06379_consen 314 KGASKKTIRVLVLGIAVLILSVVIVGY 340 (344)
T ss_pred ccCCcccHHHHHHHHHHHHHHHHHHhc
Confidence 999988888899999999998887653
No 76
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=79.34 E-value=1.8 Score=35.53 Aligned_cols=48 Identities=21% Similarity=0.463 Sum_probs=39.6
Q ss_pred HhhhhhhhHHHHHHHHHHHHHhcccccccchhhHHHhhcceeEEEEecCC
Q 019718 79 LVTPLGALSIIIRYAVLAHFMLKERLQKMGILGCITCIVGSVVIVIHAPQ 128 (336)
Q Consensus 79 lV~Pl~a~~lv~~~~~la~~~l~e~~~~~~~~G~~li~~G~~lvv~~~~~ 128 (336)
+-+.-|++-++.+ .+-....-|+|+++.|++|..+|.+|+.++ .++|.
T Consensus 59 vYAAYGGvfI~~S-l~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI-~~~PR 106 (107)
T PF02694_consen 59 VYAAYGGVFIVAS-LLWGWLVDGVRPDRWDWIGAAICLVGVAII-LFAPR 106 (107)
T ss_pred HHHHhhhhHHHHH-HHHHhhhcCcCCChHHHHhHHHHHHhHHhe-EecCC
Confidence 3455677888888 899999999999999999999999998665 44553
No 77
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=78.02 E-value=58 Score=30.11 Aligned_cols=59 Identities=24% Similarity=0.226 Sum_probs=52.5
Q ss_pred HHHHHHHHhhcchhHhhhhhhhHHHHHHHHHHHHHhcccccccchhhHHHhhcceeEEEE
Q 019718 65 EVANFVAYVYAPAVLVTPLGALSIIIRYAVLAHFMLKERLQKMGILGCITCIVGSVVIVI 124 (336)
Q Consensus 65 ~~~~~~al~~ap~slV~Pl~a~~lv~~~~~la~~~l~e~~~~~~~~G~~li~~G~~lvv~ 124 (336)
+.....||--..++.+..+.+..-.|. .+++...||+|+...+++...+.+.|++++..
T Consensus 67 NY~Yl~AL~~is~s~asai~~CNaAFV-fiLa~IVL~D~~~~~kIlaailAI~GiVmiay 125 (290)
T KOG4314|consen 67 NYLYLLALKKISASDASAIFACNAAFV-FILAIIVLGDRFMGFKILAAILAIGGIVMIAY 125 (290)
T ss_pred CcHHHHHHHhcChhhhHHHHHhhHHHH-HHHHHHHhccchhhhhHHHHHHHhCcEEEEEe
Confidence 345667888899999999999999999 99999999999999999999999999877654
No 78
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=76.27 E-value=44 Score=31.70 Aligned_cols=201 Identities=12% Similarity=0.143 Sum_probs=99.2
Q ss_pred HHHHHHHHHHHHHHhhcchhHhhhhh-hhHHHHHHHHHHHHHhcccccccchhhHHHhhcceeEEEEecCC----CCCCC
Q 019718 59 VTMIVGEVANFVAYVYAPAVLVTPLG-ALSIIIRYAVLAHFMLKERLQKMGILGCITCIVGSVVIVIHAPQ----EHTPN 133 (336)
Q Consensus 59 ~~~~~g~~~~~~al~~ap~slV~Pl~-a~~lv~~~~~la~~~l~e~~~~~~~~G~~li~~G~~lvv~~~~~----~~~~~ 133 (336)
..+.+..+.+=-|+.+.|.-- |-+| +.--+-. ++++-.+.+.+-++++...+++|++|++++..--++ +++..
T Consensus 93 ~sYLlAMVssN~Alq~vpYPT-qVlgKScKPIPV-MilGVl~~~KsY~w~kY~cVL~IV~GValFmYK~~Kv~g~e~~t~ 170 (337)
T KOG1580|consen 93 ASYLLAMVSSNQALQYVPYPT-QVLGKSCKPIPV-MILGVLFAHKSYHWRKYCCVLMIVVGVALFMYKENKVGGAEDKTF 170 (337)
T ss_pred HHHHHHHHhccchhcccCCcH-HHhcccCCCcce-eeeehhhhcccccHHHHHHHHHHHHHHHHhhccccccCCCccccc
Confidence 335555555556677776432 1111 1112233 566777779999999999999999999887653222 22233
Q ss_pred CHHHHHHHhcChhHHHHHHHHH-HHHHHHhheec--ccCCCcchhhHHH-HHHhhhhHHHHHHHHHHHHHHHhhcCCccc
Q 019718 134 SVQEIWALATQPDFLIYVAATV-SVVLALVLHFE--PRCGQTNILVYLG-ICSLMGSLTVVSIKAIGIAIKLTLDGISQI 209 (336)
Q Consensus 134 t~~el~~~~~~~~fl~y~~~~~-~~~~~li~~~~--~~~g~~~~~~y~~-isgllgg~tvl~~K~v~~~l~~~~~g~~~f 209 (336)
-..|+.-.++ +.. ......-=+++ .+.+..+.+.|.- -|.+.=|.-.+++--.=+.+. -.-
T Consensus 171 g~GElLL~lS---------L~mDGlTg~~Qdrira~yq~~g~~MM~~~NlwStL~Lg~g~lfTGElweF~y------F~~ 235 (337)
T KOG1580|consen 171 GFGELLLILS---------LAMDGLTGSIQDRIRASYQRTGTSMMFYTNLWSTLYLGAGLLFTGELWEFFY------FVQ 235 (337)
T ss_pred chHHHHHHHH---------HHhcccchhHHHHHHHhhccCchhhHHHHHHHHHHHhhhhheehhhHHHHHH------HHH
Confidence 3334432110 000 00000000111 1122233343321 222222222222111111110 012
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhHHHHHHHHHHHHHHHHhcccCCCChhHHHHHH
Q 019718 210 AYPQTWFFLTVAAVCVVTQLNYLNKALDTFNAAIVSPVYYVMFTTLTIIASAIMFKDWSGQDVSGIASEI 279 (336)
Q Consensus 210 ~~~~~y~ll~~~v~~~~~Q~~~Ln~aL~~~~~~~v~P~~~v~~~~~~i~~G~i~f~E~~~~~~~~~~~~~ 279 (336)
.||..|.=+....++..+.++|.=+....|.|.. +.+.+..--.++++++.++|+. ..++.||++-.
T Consensus 236 RhP~~~~~l~l~ai~s~LGQ~fIF~tv~~FgPLt-CSivTTTRKfFTil~SVllf~n--pls~rQwlgtv 302 (337)
T KOG1580|consen 236 RHPYVFWDLTLLAIASCLGQWFIFKTVEEFGPLT-CSIVTTTRKFFTILISVLLFNN--PLSGRQWLGTV 302 (337)
T ss_pred hccHHHHHHHHHHHHHHhhhHHHHHHHHHhCCee-EEEEeehHHHHHHHHHHHHhcC--cCcHHHHHHHH
Confidence 4677655455555555556667767677776632 3333445566788999999988 45677775443
No 79
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=75.56 E-value=17 Score=35.02 Aligned_cols=114 Identities=14% Similarity=0.195 Sum_probs=61.5
Q ss_pred hHHHHHHhhhhHHHHHHHHHHHHHHH-hh-cCCcccchhHHHHHHHHHHHHHHHHHHHHH-HhhccccccchhhhHHHHH
Q 019718 176 VYLGICSLMGSLTVVSIKAIGIAIKL-TL-DGISQIAYPQTWFFLTVAAVCVVTQLNYLN-KALDTFNAAIVSPVYYVMF 252 (336)
Q Consensus 176 ~y~~isgllgg~tvl~~K~v~~~l~~-~~-~g~~~f~~~~~y~ll~~~v~~~~~Q~~~Ln-~aL~~~~~~~v~P~~~v~~ 252 (336)
..+.+++++.+....+.|--...... .. ++.+...++.-..+..+++..++.+. +| .|+..-+++.+.|+--+..
T Consensus 10 ~lav~ss~~~~~g~~lqk~~~~r~~~~~~~~~~~~~~~l~~~~W~~G~~~~~~g~~--~~~~Al~~ap~slv~Plg~~~l 87 (300)
T PF05653_consen 10 LLAVVSSIFIAVGFNLQKKSHLRLPRGSLRAGSGGRSYLRRPLWWIGLLLMVLGEI--LNFVALGFAPASLVAPLGALSL 87 (300)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhhHHHhhHHHHHHHHHHhcchH--HHHHHHHhhhHHHHHHHHhhhh
Confidence 34445556666666655554332221 00 01111222222233334444444332 44 3888889999999975444
Q ss_pred HHHHHHHHHHHhcccCCCChhHHHHHHHHHHHHHHhhhhhccccCC
Q 019718 253 TTLTIIASAIMFKDWSGQDVSGIASEICGFITVLSGTIILHATREH 298 (336)
Q Consensus 253 ~~~~i~~G~i~f~E~~~~~~~~~~~~~~G~~~~i~GV~lLs~~~~~ 298 (336)
+.+.+.+-.+++|..+ ..+ ..|+++++.|+.++....++
T Consensus 88 -v~~~~~a~~~l~e~~~--~~~----~~G~~l~i~G~~liv~~~~~ 126 (300)
T PF05653_consen 88 -VFNAVLARFFLGEKLT--RRD----IVGCALIILGSVLIVIFAPK 126 (300)
T ss_pred -hhHHHHhHHHhcccch--HhH----HhhHHHHHhhheeeEEeCCC
Confidence 4566667788898554 333 36777788888776654433
No 80
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=72.80 E-value=37 Score=31.74 Aligned_cols=109 Identities=20% Similarity=0.203 Sum_probs=69.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhHHhhhccC--------------------CCccCC--Cccccch--hhhHHHHHHH
Q 019718 5 ENSKGLILAVASSAFIGSSFILKKKGLKRAGAS--------------------GTRAGV--GGYTYLL--EPLWWAGMVT 60 (336)
Q Consensus 5 ~~~iGv~LAl~sa~~~a~G~vlqk~~~~~~~~~--------------------~~~~~~--~~~~~~~--~p~W~~G~~~ 60 (336)
+..+|+.+.++++++.+++-+...|-.++.+.. ..+++. .....+. ++.-|.=+.+
T Consensus 111 ~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~gi~~~~~~~~~~~~~~~~~~g~f~G~~~~~~~~i~~ 190 (244)
T PF04142_consen 111 NPLLGLLAVLAAAFLSGFAGVYFEKLLKRSNVSLWIQNMQLYLFGILFNLLALLLSDGSAISESGFFHGYSWWVWIVIFL 190 (244)
T ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHhcccccccccCCchhhcchHHHHHHHH
Confidence 457899999999999999999888876654310 000000 0111222 1222222233
Q ss_pred HHHHHHHHHHHHhhcchhHhhhhhhhHHHHHHHHHHHHHhcccccccchhhHHH
Q 019718 61 MIVGEVANFVAYVYAPAVLVTPLGALSIIIRYAVLAHFMLKERLQKMGILGCIT 114 (336)
Q Consensus 61 ~~~g~~~~~~al~~ap~slV~Pl~a~~lv~~~~~la~~~l~e~~~~~~~~G~~l 114 (336)
..+|-+.-...+.++.-.+=.=-.+++++.+ .+++..+.+.+++..-.+|+.+
T Consensus 191 ~a~gGllva~v~KyadnI~K~fa~a~siv~t-~~~s~~lf~~~~s~~f~lg~~~ 243 (244)
T PF04142_consen 191 QAIGGLLVAFVLKYADNIVKGFATAVSIVLT-AVLSVLLFGFPPSLSFLLGAAL 243 (244)
T ss_pred HHHhhHHHHHHHHHHhHHHHHHHHHHHHHHH-HHHHHHHhCCCCchHHhhheec
Confidence 4445555555677777655555678899999 9999999999999887777654
No 81
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=71.17 E-value=18 Score=34.46 Aligned_cols=114 Identities=16% Similarity=0.157 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHhhhccCCCcc--CC------------------C----ccccchhhhHHHHHHH-H
Q 019718 7 SKGLILAVASSAFIGSSFILKKKGLKRAGASGTRA--GV------------------G----GYTYLLEPLWWAGMVT-M 61 (336)
Q Consensus 7 ~iGv~LAl~sa~~~a~G~vlqk~~~~~~~~~~~~~--~~------------------~----~~~~~~~p~W~~G~~~-~ 61 (336)
..|+++.+++-++.++-.+.|+|-.++.+.+.... .. + ..-..+.|..+.-+++ .
T Consensus 153 ~~G~~ll~~sl~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s 232 (303)
T PF08449_consen 153 ALGIILLLLSLLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLFS 232 (303)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHHH
Confidence 34999999999999999999999766544321000 00 0 0011123333333222 3
Q ss_pred HHHHHHHHHH---HhhcchhHhhhhhhhHHHHHHHHHHHHHhcccccccchhhHHHhhcceeE
Q 019718 62 IVGEVANFVA---YVYAPAVLVTPLGALSIIIRYAVLAHFMLKERLQKMGILGCITCIVGSVV 121 (336)
Q Consensus 62 ~~g~~~~~~a---l~~ap~slV~Pl~a~~lv~~~~~la~~~l~e~~~~~~~~G~~li~~G~~l 121 (336)
..+.+++..- ...-......=...+--+.+ .+++.++.+++++...|.|++++..|..+
T Consensus 233 ~~~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~s-illS~~~f~~~~~~~~~~G~~lv~~g~~~ 294 (303)
T PF08449_consen 233 LTGALGQFFIFYLIKKFSALTTTIVTTLRKFLS-ILLSVIIFGHPLSPLQWIGIVLVFAGIFL 294 (303)
T ss_pred HHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHH-HHHHHHhcCCcCChHHHHHHHHhHHHHHH
Confidence 3333333322 22223334455556667788 89999999999999999999999998653
No 82
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=71.04 E-value=11 Score=36.80 Aligned_cols=75 Identities=20% Similarity=0.304 Sum_probs=60.8
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHhhcchhHhhhhhhhHHHHHHHHHHHHHhcccccccchhhHHHhhcceeEEEE
Q 019718 48 YLLEPLWWAGMVTMIVGEVANFVAYVYAPAVLVTPLGALSIIIRYAVLAHFMLKERLQKMGILGCITCIVGSVVIVI 124 (336)
Q Consensus 48 ~~~~p~W~~G~~~~~~g~~~~~~al~~ap~slV~Pl~a~~lv~~~~~la~~~l~e~~~~~~~~G~~li~~G~~lvv~ 124 (336)
...++.-..|..- .+|-++.-.++..-|.+.+|-+-++..+++ +++++++.+|+.++..+.-...++.|+.+-..
T Consensus 81 ~~~~~llpl~~~~-~~~~v~~n~Sl~~v~VsF~q~iKa~~P~~t-vl~~~~~~~~~~s~~~~lsL~piv~GV~ias~ 155 (316)
T KOG1441|consen 81 LPLRTLLPLGLVF-CISHVLGNVSLSYVPVSFYQTIKALMPPFT-VLLSVLLLGKTYSSMTYLSLLPIVFGVAIASV 155 (316)
T ss_pred cchHHHHHHHHHH-HHHHHhcchhhhccchhHHHHHHhhcchhH-HHHHHHHhCCCCcceEEEEEEEeeeeEEEeee
Confidence 3334444455443 367778889999999999999999999999 99999999999999999888888888765433
No 83
>PF15048 OSTbeta: Organic solute transporter subunit beta protein
Probab=70.60 E-value=4.5 Score=34.12 Aligned_cols=43 Identities=7% Similarity=0.099 Sum_probs=32.7
Q ss_pred HHHHHHhcccCCCChhHHHHHHHHHHHHHHhhhhhccccCCCC
Q 019718 258 IASAIMFKDWSGQDVSGIASEICGFITVLSGTIILHATREHEQ 300 (336)
Q Consensus 258 ~~G~i~f~E~~~~~~~~~~~~~~G~~~~i~GV~lLs~~~~~~~ 300 (336)
+.-++.|=...+.++|++.++++.++++++|+++|.++-..+.
T Consensus 20 LEemlW~fR~ED~tpWNysiL~Ls~vvlvi~~~LLgrsi~ANR 62 (125)
T PF15048_consen 20 LEEMLWFFRVEDATPWNYSILALSFVVLVISFFLLGRSIQANR 62 (125)
T ss_pred HHHHHHheecCCCCCcchHHHHHHHHHHHHHHHHHHHHhHhcc
Confidence 3445533344466789999999999999999999998765554
No 84
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=68.16 E-value=5.3 Score=37.87 Aligned_cols=62 Identities=16% Similarity=0.268 Sum_probs=48.0
Q ss_pred HhhccccccchhhhHHHHHHHHHHHHHHHHhcccCCCChhHHHHHHHHHHHHHHhhhhhccccC
Q 019718 234 KALDTFNAAIVSPVYYVMFTTLTIIASAIMFKDWSGQDVSGIASEICGFITVLSGTIILHATRE 297 (336)
Q Consensus 234 ~aL~~~~~~~v~P~~~v~~~~~~i~~G~i~f~E~~~~~~~~~~~~~~G~~~~i~GV~lLs~~~~ 297 (336)
||.+.-..+.-.|+-+-..-+.+.+.|.++|+||.. +.+...=..+.++++.|+++=+.+++
T Consensus 78 ka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t--~~~~IlG~iAliliviG~~lTs~~~~ 139 (288)
T COG4975 78 KAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTT--PTQIILGFIALILIVIGIYLTSKQDR 139 (288)
T ss_pred hheeeeeeeccccccchhhHhhceeeeEEEEeccCc--chhHHHHHHHHHHHHHhheEeeeecc
Confidence 356666667788998888888999999999999986 45665556677889999988655443
No 85
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=66.69 E-value=45 Score=27.25 Aligned_cols=104 Identities=15% Similarity=0.188 Sum_probs=59.2
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHhHHhhhccCCCccCCCccccchhhhHHHHHHHHHHHHHHHHH---HHhhcchhH
Q 019718 3 LSENSKGLILAVASSAFIGSSFILKKKGLKRAGASGTRAGVGGYTYLLEPLWWAGMVTMIVGEVANFV---AYVYAPAVL 79 (336)
Q Consensus 3 ~~~~~iGv~LAl~sa~~~a~G~vlqk~~~~~~~~~~~~~~~~~~~~~~~p~W~~G~~~~~~g~~~~~~---al~~ap~sl 79 (336)
|+..+..+.|-+.|++++.+.- +++.+...++ .-..---.|=+.+.=+.+..-.|=+ .|+-+.+-.
T Consensus 5 ~~~~l~~vlLL~~SNvFMTFAW----YghLk~~~~p-------l~~~i~~SWGIA~fEY~LqvPaNRiG~~v~s~~QLK~ 73 (116)
T COG3169 5 MSVYLYPVLLLIGSNVFMTFAW----YGHLKFTNKP-------LVIVILASWGIAFFEYLLQVPANRIGHQVYSAAQLKT 73 (116)
T ss_pred CchHHHHHHHHHhhHHHHHHHH----HHHHhccCCc-------hhHHHHHHhhHHHHHHHHhCccchhhhhhccHHHHHH
Confidence 6777888999999999977664 5554433211 0011112232222222222112212 233333333
Q ss_pred hhhhhhhHHHHHHHHHHHHHhcccccccchhhHHHhhccee
Q 019718 80 VTPLGALSIIIRYAVLAHFMLKERLQKMGILGCITCIVGSV 120 (336)
Q Consensus 80 V~Pl~a~~lv~~~~~la~~~l~e~~~~~~~~G~~li~~G~~ 120 (336)
.|- .+++..- +++|.+++||++++..+.|.+++..|+.
T Consensus 74 mQE--VItL~iF-v~Fsvfyl~epl~~~~l~a~~~i~gav~ 111 (116)
T COG3169 74 MQE--VITLAIF-VPFSVFYLKEPLRWNYLWAFLLILGAVY 111 (116)
T ss_pred HHH--HHHHHHH-HHHHHHHHcCcchHHHHHHHHHHHHHHH
Confidence 332 4566666 8899999999999988888877766653
No 86
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=64.70 E-value=59 Score=29.23 Aligned_cols=57 Identities=14% Similarity=0.067 Sum_probs=38.0
Q ss_pred HHHHHHHHhhccccccchhhhHHHHHHHHHHHHHHHHhcccCCCChhHHHHHHHHHHHHHHhhh
Q 019718 227 TQLNYLNKALDTFNAAIVSPVYYVMFTTLTIIASAIMFKDWSGQDVSGIASEICGFITVLSGTI 290 (336)
Q Consensus 227 ~Q~~~Ln~aL~~~~~~~v~P~~~v~~~~~~i~~G~i~f~E~~~~~~~~~~~~~~G~~~~i~GV~ 290 (336)
.|..+.+-.+++.|++ ..-+...+-.+.+.+.+..+|+|. .++.+ ..|..+++.|++
T Consensus 164 ~~~~~v~~vlk~~~~~-~~~~~~~~~~~~s~lls~~~f~~~--ls~~~----~~g~~lV~~~~~ 220 (222)
T TIGR00803 164 GGGLCIGGVVRYADNT-TKSFVTALSIILSTLASVRLFDAK--ISSTF----YLGAILVFLATF 220 (222)
T ss_pred hcCceeeehhHHhHHH-HHHHHHHHHHHHHHHHHHHHhcCC--ccHHH----HHHHHHHHeeeE
Confidence 3555677788888876 555666777788888899999874 34443 345555555554
No 87
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=58.24 E-value=21 Score=35.75 Aligned_cols=119 Identities=20% Similarity=0.257 Sum_probs=78.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhHHhhhc-cCCCcc--C---CCccccchhhhH----------------------HH
Q 019718 5 ENSKGLILAVASSAFIGSSFILKKKGLKRAG-ASGTRA--G---VGGYTYLLEPLW----------------------WA 56 (336)
Q Consensus 5 ~~~iGv~LAl~sa~~~a~G~vlqk~~~~~~~-~~~~~~--~---~~~~~~~~~p~W----------------------~~ 56 (336)
...+|.++|+.||++.|+=.++-||...++. +-+.+. | ..-.-+++-|.| ..
T Consensus 244 ~~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~~e~F~lP~~~q~~~vv~~ 323 (416)
T KOG2765|consen 244 RPLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFGEERFELPSSTQFSLVVFN 323 (416)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhccCcccCCCCceeEeeeHh
Confidence 4579999999999999999999888655442 111000 0 000011111111 34
Q ss_pred HHHHHHHHHHHHHHHHhhcchhHhhhhhhhHHHHHHHHHHHHHhcccccccchhhHHHhhcceeEEEE
Q 019718 57 GMVTMIVGEVANFVAYVYAPAVLVTPLGALSIIIRYAVLAHFMLKERLQKMGILGCITCIVGSVVIVI 124 (336)
Q Consensus 57 G~~~~~~g~~~~~~al~~ap~slV~Pl~a~~lv~~~~~la~~~l~e~~~~~~~~G~~li~~G~~lvv~ 124 (336)
|+...++.-.+|..|...-...+++-=..+++..+ ++.=..+-+.+.+...++|.+.+.+|-+++-.
T Consensus 324 ~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA-~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~ 390 (416)
T KOG2765|consen 324 NLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLA-MFADVLIKGKHPSALYIIGSIPIFVGFVIVNI 390 (416)
T ss_pred hHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHH-HHHHHHHcCCCCCHHHHHHHHHHHHHHhheec
Confidence 55556677778888877777666766677788887 65545555888999999999999999665544
No 88
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=54.05 E-value=1e+02 Score=29.88 Aligned_cols=71 Identities=10% Similarity=0.099 Sum_probs=42.2
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhHHHHHHHHHHHHHHHHhcccCCCChhHHHHHHHHH
Q 019718 209 IAYPQTWFFLTVAAVCVVTQLNYLNKALDTFNAAIVSPVYYVMFTTLTIIASAIMFKDWSGQDVSGIASEICGF 282 (336)
Q Consensus 209 f~~~~~y~ll~~~v~~~~~Q~~~Ln~aL~~~~~~~v~P~~~v~~~~~~i~~G~i~f~E~~~~~~~~~~~~~~G~ 282 (336)
.++|..++.+.....-...|-.-.=-|..++.... ..+=|-..|+++++.|.++++| +.+..|++...++.
T Consensus 66 ~~~p~~~~~~~l~a~li~~nW~lfiWAvn~g~~le-aSLGY~InPL~~VllG~lflkE--rls~~Q~iAV~lA~ 136 (293)
T COG2962 66 LKQPKTLLMLALTALLIGLNWWLFIWAVNNGHVLE-ASLGYFINPLVNVLLGRLFLKE--RLSRLQWIAVGLAA 136 (293)
T ss_pred HhCcHHHHHHHHHHHHHHHHHHHhheecCCCchhH-HHhHHHHHHHHHHHHHHHHHHh--hccHHHHHHHHHHH
Confidence 56777766655555555545433333333333322 2233445677799999999999 55678876665553
No 89
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=53.72 E-value=1.1e+02 Score=27.94 Aligned_cols=90 Identities=21% Similarity=0.282 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh-HHhhhccCCCccCCCccccchhhhHHHHHHHHHHHHHHHH---HHHhhcchhH--h
Q 019718 7 SKGLILAVASSAFIGSSFILKKK-GLKRAGASGTRAGVGGYTYLLEPLWWAGMVTMIVGEVANF---VAYVYAPAVL--V 80 (336)
Q Consensus 7 ~iGv~LAl~sa~~~a~G~vlqk~-~~~~~~~~~~~~~~~~~~~~~~p~W~~G~~~~~~g~~~~~---~al~~ap~sl--V 80 (336)
..|++--++.++..++..-+..| ..+...++ -+||.||=+++...+....|+ .+-+|.|.++ .
T Consensus 124 ~~GlItlll~a~vgGfamy~my~y~yr~~ad~-----------sqr~~~~K~~lv~~~sm~lWi~v~i~t~~lPtslN~~ 192 (226)
T COG4858 124 VYGLITLLLTAVVGGFAMYIMYYYAYRMRADN-----------SQRPGTWKYLLVAVLSMLLWIAVMIATVFLPTSLNPQ 192 (226)
T ss_pred chhHHHHHHHHHhhhHHHHHHHHHHHHhhccc-----------ccCCchHHHHHHHHHHHHHHHHHHHHHhhCCCcCCcC
Confidence 35666666666666666544433 43322221 236888888877666665554 5567778775 2
Q ss_pred hhhhhhHHHHHHHHH-HHHHhcccccccc
Q 019718 81 TPLGALSIIIRYAVL-AHFMLKERLQKMG 108 (336)
Q Consensus 81 ~Pl~a~~lv~~~~~l-a~~~l~e~~~~~~ 108 (336)
-|--++.++-. +++ -+|++|+|.+.+.
T Consensus 193 L~pi~l~IiGa-v~lalRfylkkk~NIqs 220 (226)
T COG4858 193 LPPIALTIIGA-VILALRFYLKKKKNIQS 220 (226)
T ss_pred CchHHHHHHHH-HHHHHHHHHHHhhcccc
Confidence 33334444444 333 4778898887653
No 90
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=52.67 E-value=9.6 Score=31.33 Aligned_cols=92 Identities=16% Similarity=0.263 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHhhhccCCCccCCCccccchhhhHHHHHHHHH---HHHHHHHHH-------Hhhcchh
Q 019718 9 GLILAVASSAFIGSSFILKKKGLKRAGASGTRAGVGGYTYLLEPLWWAGMVTMI---VGEVANFVA-------YVYAPAV 78 (336)
Q Consensus 9 Gv~LAl~sa~~~a~G~vlqk~~~~~~~~~~~~~~~~~~~~~~~p~W~~G~~~~~---~g~~~~~~a-------l~~ap~s 78 (336)
.+.|=++|++++...- ++|.+... .+|+|.+=+..-. .-+.++.=| ++.+.+-
T Consensus 3 ti~LL~~SN~FMTfAW----YGHLK~~~-------------~~pl~~ail~SWgIAffEY~l~VPANRiG~~~~s~~QLK 65 (108)
T PF04342_consen 3 TILLLILSNIFMTFAW----YGHLKFKS-------------SKPLWIAILISWGIAFFEYCLQVPANRIGYQTFSLAQLK 65 (108)
T ss_pred hhHHHHHHHHHHHHHH----HHHhhccc-------------cCcHHHHHHHHHHHHHHHHHHhCcchhhhccccCHHHHH
Confidence 3566778888877765 66655431 1356644333211 222233333 2333333
Q ss_pred HhhhhhhhHHHHHHHHHHHHHhcccccccchhhHHHhhccee
Q 019718 79 LVTPLGALSIIIRYAVLAHFMLKERLQKMGILGCITCIVGSV 120 (336)
Q Consensus 79 lV~Pl~a~~lv~~~~~la~~~l~e~~~~~~~~G~~li~~G~~ 120 (336)
+.|- ++++..= .+++.+++||++++....|-++++.++.
T Consensus 66 i~QE--vitL~vF-~~Fsv~~l~E~l~~n~l~af~~i~~av~ 104 (108)
T PF04342_consen 66 IIQE--VITLVVF-APFSVFYLGEPLKWNYLWAFLCILGAVY 104 (108)
T ss_pred HHHH--HHhhhee-HHHHHHHhCCCccHHHHHHHHHHHHhhh
Confidence 3333 2334444 6789999999999998888887766643
No 91
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=51.11 E-value=1.1e+02 Score=28.30 Aligned_cols=19 Identities=16% Similarity=-0.027 Sum_probs=11.6
Q ss_pred eecccCCCcchhhHHHHHH
Q 019718 164 HFEPRCGQTNILVYLGICS 182 (336)
Q Consensus 164 ~~~~~~g~~~~~~y~~isg 182 (336)
+...|+|+|+.+..+.+..
T Consensus 52 ~l~dr~g~r~~~~~~~~~~ 70 (379)
T TIGR00881 52 SVSDRSNPRVFLPIGLILC 70 (379)
T ss_pred HHHHhhCCeehhHHHHHHH
Confidence 4456778877666554433
No 92
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=48.52 E-value=65 Score=30.51 Aligned_cols=50 Identities=16% Similarity=0.147 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHH-----HhcccCCCChhHHHHHHHHHHHHHHhhhhhccccCCC
Q 019718 249 YVMFTTLTIIASAI-----MFKDWSGQDVSGIASEICGFITVLSGTIILHATREHE 299 (336)
Q Consensus 249 ~v~~~~~~i~~G~i-----~f~E~~~~~~~~~~~~~~G~~~~i~GV~lLs~~~~~~ 299 (336)
+..|...+++.|-. +|++..+. +..-.+=.+|.+++++|..+.+.-|+++
T Consensus 85 ~liW~s~n~l~Gw~~grfGlFg~~~~~-~~~~~Ln~~G~~l~~~~~~~f~fik~~~ 139 (254)
T PF07857_consen 85 MLIWGSVNCLTGWASGRFGLFGLDPQV-PSSPWLNYIGVALVLVSGIIFSFIKSEE 139 (254)
T ss_pred HHHHHHHHHHHHHHHhhceeccccccc-cchhHHHHHHHHHHHHHHHheeeecCCC
Confidence 34566667776665 56665543 3444455566666666666666555554
No 93
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=43.60 E-value=2e+02 Score=29.80 Aligned_cols=122 Identities=14% Similarity=0.034 Sum_probs=62.3
Q ss_pred heecccCCCcchhhHHHHHHhhhhHHHHHHHHHHHHHHHhhcCCcccchhHHHHHHHHH---HHHHHHHHHHHHH-hh--
Q 019718 163 LHFEPRCGQTNILVYLGICSLMGSLTVVSIKAIGIAIKLTLDGISQIAYPQTWFFLTVA---AVCVVTQLNYLNK-AL-- 236 (336)
Q Consensus 163 ~~~~~~~g~~~~~~y~~isgllgg~tvl~~K~v~~~l~~~~~g~~~f~~~~~y~ll~~~---v~~~~~Q~~~Ln~-aL-- 236 (336)
.....|+|+|+.+....+-+++++....++|..-..-...+ --++.. ......+--|++. |=
T Consensus 81 ~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~------------GR~i~Gl~~gl~~~~~pmyl~E~sP~~ 148 (485)
T KOG0569|consen 81 GLLADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLIL------------GRLIVGLACGLSTGLVPMYLTEISPKN 148 (485)
T ss_pred HHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH------------HHHHHHHHhHHHHHHHHHHHhhcChhh
Confidence 34678899998888877888888888877777443111000 011111 1223445556653 11
Q ss_pred ccccccchhhhHHHHHHHHHHHHHHHHhcccCCCChhHHHHHHHHHHHHHHhhhhhccccCCC
Q 019718 237 DTFNAAIVSPVYYVMFTTLTIIASAIMFKDWSGQDVSGIASEICGFITVLSGTIILHATREHE 299 (336)
Q Consensus 237 ~~~~~~~v~P~~~v~~~~~~i~~G~i~f~E~~~~~~~~~~~~~~G~~~~i~GV~lLs~~~~~~ 299 (336)
-|+ .+..+.+...++..+++..+-..+....+-.+...+.+..+..+.-.+++-.-||.|
T Consensus 149 ~RG---~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~l~~~PESP 208 (485)
T KOG0569|consen 149 LRG---ALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLALLPFLPESP 208 (485)
T ss_pred hcc---HHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 112 233444445555444444555666554443233344444444455455555555554
No 94
>PF11970 Git3_C: G protein-coupled glucose receptor regulating Gpa2 C-term; InterPro: IPR022596 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor. Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This family is the conserved C-terminal domain of the member proteins.
Probab=42.92 E-value=56 Score=25.11 Aligned_cols=50 Identities=18% Similarity=0.265 Sum_probs=36.3
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHhcccCCCChhHHHHHHHHHHHHHHhhh
Q 019718 241 AAIVSPVYYVMFTTLTIIASAIMFKDWSGQDVSGIASEICGFITVLSGTI 290 (336)
Q Consensus 241 ~~~v~P~~~v~~~~~~i~~G~i~f~E~~~~~~~~~~~~~~G~~~~i~GV~ 290 (336)
...++|+.|++-.++=++.+..-+....+.+|..+...+.++...+.|.+
T Consensus 13 ~mfiYP~~Yi~lwlfP~~~~~~~~~~~~~~~p~~~l~~i~~~~~~~~G~V 62 (76)
T PF11970_consen 13 SMFIYPLVYIVLWLFPFAAHRMQYMYEIGHGPSFWLFCIAGFMQPSQGFV 62 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHccCHH
Confidence 45788999998888888888888875445556667777777777776653
No 95
>PF08507 COPI_assoc: COPI associated protein; InterPro: IPR013714 Proteins in this family co-localise with COPI vesicle coat proteins []. In yeast it is a Golgi membrane protein involved in vesicular trafficking, interacting with TVP18 [].
Probab=42.65 E-value=41 Score=28.39 Aligned_cols=19 Identities=37% Similarity=0.553 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHhhhhh
Q 019718 274 GIASEICGFITVLSGTIIL 292 (336)
Q Consensus 274 ~~~~~~~G~~~~i~GV~lL 292 (336)
.+.....|..+.+.|++-+
T Consensus 85 ~~~~~i~g~~~~~~G~~~i 103 (136)
T PF08507_consen 85 SILSIIIGLLLFLVGVIYI 103 (136)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444445555555554433
No 96
>TIGR01148 mtrC N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit C. coenzyme M methyltransferase subunit C in methanogenic archaea. This methyltranferase is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=41.98 E-value=3.2e+02 Score=26.09 Aligned_cols=138 Identities=14% Similarity=0.161 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHHHHHHhhcc--hhHhhhhhhh--HHHHHHHH---HHHHHhcccccccchhhHHHhhcceeEEEEecCC
Q 019718 56 AGMVTMIVGEVANFVAYVYAP--AVLVTPLGAL--SIIIRYAV---LAHFMLKERLQKMGILGCITCIVGSVVIVIHAPQ 128 (336)
Q Consensus 56 ~G~~~~~~g~~~~~~al~~ap--~slV~Pl~a~--~lv~~~~~---la~~~l~e~~~~~~~~G~~li~~G~~lvv~~~~~ 128 (336)
+||..+..|.+....++.+.. ..++.|+-++ +.+.. .+ ++....|-|+...+..=+-+.+.|+..+.-++..
T Consensus 75 IGm~alG~G~vaal~G~~i~g~i~~~a~PI~alIia~IiG-~vvG~la~~vi~MkIPiM~~~mtels~agaLailG~s~a 153 (265)
T TIGR01148 75 IGMMSLGMGILAAVAGLALGGNTPAIAAPIIALVVAAIIG-GVVGVLANKVIGMKIPIMERCMTEISCAGTLALLGLSVA 153 (265)
T ss_pred HHHHHHhHHHHHHHHHHHccccchHHHHHHHHHHHHHHHH-HHHHHHHhccccCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 688888888888888877721 2266776443 22222 22 2333444455444443333444443322222322
Q ss_pred CCCCCCHHHHHHHhcChhHHHHHHHHHHHHHHH--hheecccCCCcchhhHHHHHHhhhhHHHHHHHH
Q 019718 129 EHTPNSVQEIWALATQPDFLIYVAATVSVVLAL--VLHFEPRCGQTNILVYLGICSLMGSLTVVSIKA 194 (336)
Q Consensus 129 ~~~~~t~~el~~~~~~~~fl~y~~~~~~~~~~l--i~~~~~~~g~~~~~~y~~isgllgg~tvl~~K~ 194 (336)
-...++.+.+.+...++.++.-.++...+.+.- -.-..|.-.|+|.+..+..||.+..+..-..|.
T Consensus 154 iaGsf~~~~~~~~vi~~G~IAl~Fi~~~mAilHPFNACLGPnE~q~RTL~La~e~G~ls~ii~~i~s~ 221 (265)
T TIGR01148 154 IAGSFTWQAVISYVIANGYIALLFIIGGMAILHPFNACLGPNESQDRTLWLAVECGFITGFVSSLHEG 221 (265)
T ss_pred HhCcccHHHHHHHHhcccHHHHHHHHHHHHhcCcchhccCCCcchhHHHHHHHHHhHHHHHHHHHHHH
Confidence 223467788888777787765433332222210 011356666788889999999777655444443
No 97
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=40.29 E-value=2.2e+02 Score=25.67 Aligned_cols=56 Identities=23% Similarity=0.433 Sum_probs=31.0
Q ss_pred hhhHHHHHHHHHHHHHHHHH---HHhhcchh---HhhhhhhhHHHHHHHHHHHHHhccccccc
Q 019718 51 EPLWWAGMVTMIVGEVANFV---AYVYAPAV---LVTPLGALSIIIRYAVLAHFMLKERLQKM 107 (336)
Q Consensus 51 ~p~W~~G~~~~~~g~~~~~~---al~~ap~s---lV~Pl~a~~lv~~~~~la~~~l~e~~~~~ 107 (336)
||.||-.++..++..+.+++ ...+.|.. .+.|...+-+-.. ++..++++|.|.+.+
T Consensus 143 r~~~~k~~~~~~~~~~~w~~~~~~~~~lp~~inp~l~~~~~iiig~i-~~~~~~~lkkk~~i~ 204 (206)
T PF06570_consen 143 RPSWWKYILISVLAMVLWIVIFVLTSFLPPVINPVLPPWVYIIIGVI-AFALRFYLKKKYNIT 204 (206)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHccccCCcCCCHHHHHHHHHH-HHHHHHHHHHHhCCC
Confidence 44555555444444433332 23345544 3455555555556 677888998887654
No 98
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=39.69 E-value=61 Score=27.53 Aligned_cols=34 Identities=26% Similarity=0.371 Sum_probs=25.7
Q ss_pred hHHHHHHHHHHHH----HhcccccccchhhHHHhhccee
Q 019718 86 LSIIIRYAVLAHF----MLKERLQKMGILGCITCIVGSV 120 (336)
Q Consensus 86 ~~lv~~~~~la~~----~l~e~~~~~~~~G~~li~~G~~ 120 (336)
-+++.+ +++-++ .-|++++.++..|.+++++|+.
T Consensus 100 GQl~~s-l~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~ 137 (138)
T PF04657_consen 100 GQLIAS-LLIDHFGLFGAPKRPFSLRRILGLALMIAGVI 137 (138)
T ss_pred HHHHHH-HHHHHccccCCCCCCCCHHHHHHHHHHHHHHh
Confidence 344455 566665 4678999999999999999975
No 99
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=37.51 E-value=4.6e+02 Score=27.00 Aligned_cols=42 Identities=17% Similarity=0.115 Sum_probs=32.5
Q ss_pred hhHHHHHHHHHHHHHHhhhhhccccCCCCCCCCCCccccccC
Q 019718 272 VSGIASEICGFITVLSGTIILHATREHEQTTAPVGTVTWYVS 313 (336)
Q Consensus 272 ~~~~~~~~~G~~~~i~GV~lLs~~~~~~~~~~~~~~~~~~~~ 313 (336)
.|+...+.-|++.++.|++++-+-+|.|+..--|....+|=|
T Consensus 183 ~w~~~f~~pgiiaiival~~~~~~rd~Pqs~GLP~ie~~~~d 224 (448)
T COG2271 183 GWRAAFYFPGIIAIIVALILLFLLRDRPQSEGLPPIEEYRGD 224 (448)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCHHHhhcC
Confidence 577888889999999999999999988876655555555444
No 100
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=36.38 E-value=2.2e+02 Score=25.90 Aligned_cols=50 Identities=12% Similarity=0.058 Sum_probs=32.0
Q ss_pred HHHHHHhhccccccchhhhHHHHHHHHHHHHHHHHhcccCCCChhHHHHHHHH
Q 019718 229 LNYLNKALDTFNAAIVSPVYYVMFTTLTIIASAIMFKDWSGQDVSGIASEICG 281 (336)
Q Consensus 229 ~~~Ln~aL~~~~~~~v~P~~~v~~~~~~i~~G~i~f~E~~~~~~~~~~~~~~G 281 (336)
..+...|+++-+.....-+ +...|+.+.+.+..+++| +.+..++....+|
T Consensus 84 ~~~~~~a~~~~~~~~a~~l-~~~~Pi~~~lla~~~l~E--k~~~~~~l~~~~~ 133 (256)
T TIGR00688 84 WWLFIWAVNNGSSLEVSLG-YLINPLVMVALGRVFLKE--RISRFQFIAVIIA 133 (256)
T ss_pred HHHHHHHHHcchHHHHHHH-HHHHHHHHHHHHHHHHhc--CCCHHHHHHHHHH
Confidence 3356667776555433333 446788888999999998 4556666555444
No 101
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.69 E-value=31 Score=33.83 Aligned_cols=86 Identities=17% Similarity=0.229 Sum_probs=59.9
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHH-HhhccccccchhhhHHHHHHHHHHHHHHHHhcccCCCChhHHHHHHHHHHHH
Q 019718 207 SQIAYPQTWFFLTVAAVCVVTQLNYLN-KALDTFNAAIVSPVYYVMFTTLTIIASAIMFKDWSGQDVSGIASEICGFITV 285 (336)
Q Consensus 207 ~~f~~~~~y~ll~~~v~~~~~Q~~~Ln-~aL~~~~~~~v~P~~~v~~~~~~i~~G~i~f~E~~~~~~~~~~~~~~G~~~~ 285 (336)
+-+.+|.-|+=++.+.++=+ .| .|..-.+++.+.|+=-...+.++++ +-.+++|..+ + .=.+|++++
T Consensus 60 ~yl~~~~Ww~G~ltm~vGei-----~NFaAYaFAPasLVtPLGAlsvi~sail-a~~~L~Ekl~-----~-~g~lGc~l~ 127 (335)
T KOG2922|consen 60 GYLKEPLWWAGMLTMIVGEI-----ANFAAYAFAPASLVTPLGALSVIISAIL-ASFFLKEKLN-----L-LGILGCVLC 127 (335)
T ss_pred chhhhHHHHHHHHHHHHHhH-----hhHHHHhhchHhhhccchhHHHHHHHHH-HHHHHHHHHH-----H-hhhhheeEE
Confidence 46777766665555555533 45 4667778899999987777777666 5556777544 2 234788999
Q ss_pred HHhhhhhccccCCCCCCCC
Q 019718 286 LSGTIILHATREHEQTTAP 304 (336)
Q Consensus 286 i~GV~lLs~~~~~~~~~~~ 304 (336)
+.|..++-.+.+++++.++
T Consensus 128 v~Gst~iV~haP~e~~i~t 146 (335)
T KOG2922|consen 128 VVGSTTIVIHAPKEQEIES 146 (335)
T ss_pred ecccEEEEEecCccccccc
Confidence 9999999888777766544
No 102
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=31.33 E-value=5.2e+02 Score=25.44 Aligned_cols=68 Identities=9% Similarity=0.127 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHhhcchhHhhhhhhhHHHHHHHHHHHHHhcccccccchhhHHHhhcceeEEEEecCCC
Q 019718 61 MIVGEVANFVAYVYAPAVLVTPLGALSIIIRYAVLAHFMLKERLQKMGILGCITCIVGSVVIVIHAPQE 129 (336)
Q Consensus 61 ~~~g~~~~~~al~~ap~slV~Pl~a~~lv~~~~~la~~~l~e~~~~~~~~G~~li~~G~~lvv~~~~~~ 129 (336)
-.++.-++..||-+..--...=-=+.-++-. ++...++-|+|.+..|.+-..++..|+.++..+.+++
T Consensus 93 n~~s~~~~yeaLKyvSyPtq~LaKscKmIPV-mlmg~Lvy~~ky~~~eYl~~~LIs~GvsiF~l~~~s~ 160 (327)
T KOG1581|consen 93 NTLSSWCGYEALKYVSYPTQTLAKSCKMIPV-MLMGTLVYGRKYSSFEYLVAFLISLGVSIFSLFPNSD 160 (327)
T ss_pred hhcchHHHHHHHHhccchHHHHHHHhhhhHH-HHHHHHHhcCccCcHHHHHHHHHHhheeeEEEecCCC
Confidence 4477778999988887655544456667777 8888999999999999999999999999888876555
No 103
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=30.41 E-value=6.3e+02 Score=26.17 Aligned_cols=47 Identities=9% Similarity=-0.030 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHhhcc-ccccchhhhHHHHHHHHHHHHHHHHhcccCC
Q 019718 223 VCVVTQLNYLNKALDT-FNAAIVSPVYYVMFTTLTIIASAIMFKDWSG 269 (336)
Q Consensus 223 ~~~~~Q~~~Ln~aL~~-~~~~~v~P~~~v~~~~~~i~~G~i~f~E~~~ 269 (336)
.+.+.=....|..++- .......-++.......+++.+.++.....+
T Consensus 383 ~~~~~~~~w~s~~~~g~~k~~~~~~~~i~~~~s~~~~~~~~~~~~~ap 430 (495)
T KOG2533|consen 383 ATAIIALSWTSANLAGNTKALTTVSAIIDGTGSAGAISGQLFRSLDAP 430 (495)
T ss_pred HHHHHHHhhccccccchHHhHHHHhhhhcchhHHHHhhhhhcccccCc
Confidence 3333334456666642 3335556666667777777777777766544
No 104
>TIGR00893 2A0114 d-galactonate transporter.
Probab=28.61 E-value=4.7e+02 Score=24.05 Aligned_cols=16 Identities=19% Similarity=0.179 Sum_probs=9.6
Q ss_pred eecccCCCcchhhHHH
Q 019718 164 HFEPRCGQTNILVYLG 179 (336)
Q Consensus 164 ~~~~~~g~~~~~~y~~ 179 (336)
+...|.|+|+.+..+.
T Consensus 51 ~l~d~~g~r~~~~~~~ 66 (399)
T TIGR00893 51 WLLDRFGARKTLAVFI 66 (399)
T ss_pred HHHHhcCcceeeHHHH
Confidence 3456778777655433
No 105
>PF12263 DUF3611: Protein of unknown function (DUF3611); InterPro: IPR022051 This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 180 and 205 amino acids in length. There are two completely conserved residues (W and G) that may be functionally important.
Probab=27.86 E-value=4.5e+02 Score=23.64 Aligned_cols=53 Identities=25% Similarity=0.407 Sum_probs=29.5
Q ss_pred ccchhhhH--HHHHHHHHHHHH---HHHHHHhhc---------chhHhhhhhhhHHHHH-HHHHHHHH
Q 019718 47 TYLLEPLW--WAGMVTMIVGEV---ANFVAYVYA---------PAVLVTPLGALSIIIR-YAVLAHFM 99 (336)
Q Consensus 47 ~~~~~p~W--~~G~~~~~~g~~---~~~~al~~a---------p~slV~Pl~a~~lv~~-~~~la~~~ 99 (336)
+.+|+-.+ ..||++.++|.- +..++-+.. |-..++|+-.+.+.-| |.++||+.
T Consensus 102 ~~l~~Gl~~nl~Gmllt~lG~~a~vG~L~ak~lsqp~g~~~~~~~~~i~~lDvf~vqAn~n~i~AHfv 169 (183)
T PF12263_consen 102 RLLRIGLIINLVGMLLTLLGAQATVGTLVAKALSQPQGAAIYNPSQPIRALDVFVVQANTNTILAHFV 169 (183)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccccCCCCccchHHHHHHHHHHHHHHHHHH
Confidence 33444443 367777655542 444554444 5566777776666543 36777654
No 106
>PF04211 MtrC: Tetrahydromethanopterin S-methyltransferase, subunit C ; InterPro: IPR005865 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit C in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=27.02 E-value=5.6e+02 Score=24.44 Aligned_cols=133 Identities=17% Similarity=0.187 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHHHHHHhhcch---hHhhhhhhh--HHHHHHHH---HHHHHhcccccccchhhHHHhhcceeEEEEecC
Q 019718 56 AGMVTMIVGEVANFVAYVYAPA---VLVTPLGAL--SIIIRYAV---LAHFMLKERLQKMGILGCITCIVGSVVIVIHAP 127 (336)
Q Consensus 56 ~G~~~~~~g~~~~~~al~~ap~---slV~Pl~a~--~lv~~~~~---la~~~l~e~~~~~~~~G~~li~~G~~lvv~~~~ 127 (336)
+|+..+..|.+.....+..... .++.|+.++ +.++. .+ ++....|-|+...+..=+-+..+|+..+.-++.
T Consensus 75 IGm~alGmG~ia~l~G~~i~~~~~~~l~~PI~~~iiA~IiG-~vvG~la~~vi~MkIPim~~s~tels~agaL~ilG~s~ 153 (262)
T PF04211_consen 75 IGMMALGMGIIAALAGLAIGGIGIPNLAGPIIALIIAAIIG-AVVGLLANKVIGMKIPIMEQSMTELSGAGALAILGFSA 153 (262)
T ss_pred HHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHH-HHHHHHHcccccccCchHHHHHHHHHHHHHHHHHHHHH
Confidence 6888888888887777776543 566776543 22222 22 233344545544443333344444333322333
Q ss_pred CCCCCCCHHHHHHHhcChhHHHHHHHHHHHHHHH--hheecccCCCcchhhHHHHHHhhhhHHH
Q 019718 128 QEHTPNSVQEIWALATQPDFLIYVAATVSVVLAL--VLHFEPRCGQTNILVYLGICSLMGSLTV 189 (336)
Q Consensus 128 ~~~~~~t~~el~~~~~~~~fl~y~~~~~~~~~~l--i~~~~~~~g~~~~~~y~~isgllgg~tv 189 (336)
.-...++.+.+.....++.++.-.++...+.+.- ..-..|.-.|+|.+..+..||.+.-...
T Consensus 154 aiaGsf~~~~i~~~vi~~G~IAl~Fi~~~mAIlHPFNACLGPnE~q~RTL~la~~~G~ls~ii~ 217 (262)
T PF04211_consen 154 AIAGSFDFDSIITSVINTGYIALLFIIGGMAILHPFNACLGPNESQDRTLTLAVECGFLSMIIF 217 (262)
T ss_pred HHhccccHHHHHHHHhccCHHHHHHHHHHHHhcCccccccCCCcchhHHHHHHHHHHHHHHHHH
Confidence 3234467778887777777764433322222210 0113566667888899999997765544
No 107
>PRK09917 hypothetical protein; Provisional
Probab=25.87 E-value=4.5e+02 Score=22.92 Aligned_cols=100 Identities=12% Similarity=0.067 Sum_probs=55.7
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHhHHhhhccCCCccCCCccccchhhhHHHHHHHHHHHHHHHHHHHhh-cchhH
Q 019718 1 MGLSENSKGLILAVASSAFIGSSFILKKKGLKRAGASGTRAGVGGYTYLLEPLWWAGMVTMIVGEVANFVAYVY-APAVL 79 (336)
Q Consensus 1 ~~~~~~~iGv~LAl~sa~~~a~G~vlqk~~~~~~~~~~~~~~~~~~~~~~~p~W~~G~~~~~~g~~~~~~al~~-ap~sl 79 (336)
|||-+.++.++...+.|+.-++|+-+--. .-||..|++|+.-.+.-.+-. ..... .+..+
T Consensus 1 ~~~~~~~~~~l~~~~~a~ia~~gFailfn------------------~P~r~l~~~~i~G~vgw~vy~-~~~~~~~~~~~ 61 (157)
T PRK09917 1 MGVIEFLLALAQDMILAAIPAVGFAMVFN------------------VPVRALRWCALLGAIGHGSRM-LMMTSGLNIEW 61 (157)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHhhC------------------CcHHHHHHHHHHHHHHHHHHH-HHHHcCCcHHH
Confidence 88877777888888888888888755211 123556777776553222211 22222 12233
Q ss_pred hhhhhhhHHHHHHHHHHHHHhcccccccchhhHHHhhccee
Q 019718 80 VTPLGALSIIIRYAVLAHFMLKERLQKMGILGCITCIVGSV 120 (336)
Q Consensus 80 V~Pl~a~~lv~~~~~la~~~l~e~~~~~~~~G~~li~~G~~ 120 (336)
=.=++++.+-+- ....++..|.+.+...+-|++-.+=|..
T Consensus 62 asfiaa~~igl~-s~~~Ar~~k~P~tvf~ip~iiPLVPG~~ 101 (157)
T PRK09917 62 STFMASMLVGTI-GIQWSRWYLAHPKVFTVAAVIPMFPGIS 101 (157)
T ss_pred HHHHHHHHHHHH-HHHHHHHhCCCCEEeeHhhHHhcCCCHH
Confidence 333344443333 3333345777777777777777776643
No 108
>PF07457 DUF1516: Protein of unknown function (DUF1516); InterPro: IPR010899 This family contains a number of hypothetical bacterial proteins of unknown function approximately 120 residues long.
Probab=25.78 E-value=3.8e+02 Score=22.04 Aligned_cols=44 Identities=18% Similarity=0.289 Sum_probs=28.1
Q ss_pred HHHHHHHHhc-ccCCCChhHHHHHHHHHHHHHHhhhhhccccCCC
Q 019718 256 TIIASAIMFK-DWSGQDVSGIASEICGFITVLSGTIILHATREHE 299 (336)
Q Consensus 256 ~i~~G~i~f~-E~~~~~~~~~~~~~~G~~~~i~GV~lLs~~~~~~ 299 (336)
.++.|...+- ++.+.|.....-..+|+.++..-=..++|+++.+
T Consensus 46 iiisG~~L~~~~~~~~~~l~~iK~l~gl~vI~lmEm~l~rkkk~k 90 (110)
T PF07457_consen 46 IIISGVWLFIRTFAGNPMLYIIKMLLGLIVIGLMEMALARKKKGK 90 (110)
T ss_pred HHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4445555544 4777777788888888776665555666665543
No 109
>PF04531 Phage_holin_1: Bacteriophage holin; InterPro: IPR006485 Phage proteins for bacterial lysis typically include a membrane-disrupting protein, or holin, and one or more cell wall degrading enzymes that reach the cell wall because of holin action. Holins are found in a large number of mutually non-homologous families. This entry is represented by the Bacteriophage phi-LC3, holin. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=25.62 E-value=1.9e+02 Score=22.56 Aligned_cols=21 Identities=14% Similarity=0.384 Sum_probs=14.7
Q ss_pred ccchhhhHHHHHHHHHHHHHH
Q 019718 47 TYLLEPLWWAGMVTMIVGEVA 67 (336)
Q Consensus 47 ~~~~~p~W~~G~~~~~~g~~~ 67 (336)
.-+++|.||++++..++-.+-
T Consensus 6 vR~kN~~~w~ali~~i~l~vq 26 (84)
T PF04531_consen 6 VRFKNKAFWVALISAILLLVQ 26 (84)
T ss_pred hcccCHHHHHHHHHHHHHHHH
Confidence 347899999998876544333
No 110
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=25.04 E-value=3.6e+02 Score=27.39 Aligned_cols=72 Identities=14% Similarity=0.283 Sum_probs=36.3
Q ss_pred hhhhhHHHHHHHHHHHHHhcccccccchhhHHHhhcceeEEEEecC---C----------CCCCCCHHHHHHHhcChhHH
Q 019718 82 PLGALSIIIRYAVLAHFMLKERLQKMGILGCITCIVGSVVIVIHAP---Q----------EHTPNSVQEIWALATQPDFL 148 (336)
Q Consensus 82 Pl~a~~lv~~~~~la~~~l~e~~~~~~~~G~~li~~G~~lvv~~~~---~----------~~~~~t~~el~~~~~~~~fl 148 (336)
--|+++.... +.++=++.....+..-|++....++=..++....| + +.+..+..|+.++++.+.|.
T Consensus 145 ~wGSig~ai~-s~~~G~L~~i~p~~~fwi~s~~~~il~lll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~k~~~fw 223 (412)
T PF01306_consen 145 MWGSIGFAIA-SLLAGILFNINPNIIFWIASAAAIILLLLLLLLKPDVPPQAEVADALGAKKDKVSLKDVLSLFKMRNFW 223 (412)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS---SSSSS-SSTTSSS------HHHHHHHTTSHHHH
T ss_pred HHhhHHHHHH-HHHhheeeeeCccHHHHHHHHHHHHHHHHHHHcCCcCchhhhhhcccccCCCCCcHHHHHHHhcchhHH
Confidence 3467777777 66666666655555556554322211111111111 0 11223556789999999987
Q ss_pred HHHHHH
Q 019718 149 IYVAAT 154 (336)
Q Consensus 149 ~y~~~~ 154 (336)
.+...+
T Consensus 224 ~~~l~v 229 (412)
T PF01306_consen 224 FFVLFV 229 (412)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 654443
No 111
>PF08173 YbgT_YccB: Membrane bound YbgT-like protein; InterPro: IPR012994 This family contains a set of membrane proteins, typically 33 amino acids long. The family has no known function, but the protein is found in the operon CydAB in Escherichia coli. Members have a consensus motif (MWYFXW), which is rich in aromatic residues. The protein forms a single membrane-spanning helix. This family seems to be restricted to proteobacteria [].
Probab=24.67 E-value=1.1e+02 Score=19.06 Aligned_cols=20 Identities=20% Similarity=0.107 Sum_probs=16.4
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 019718 5 ENSKGLILAVASSAFIGSSF 24 (336)
Q Consensus 5 ~~~iGv~LAl~sa~~~a~G~ 24 (336)
.|++|+.+|..-++++++.+
T Consensus 5 aWilG~~lA~~~~i~~a~wl 24 (28)
T PF08173_consen 5 AWILGVLLACAFGILNAMWL 24 (28)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 36789999999999888754
No 112
>PF07213 DAP10: DAP10 membrane protein; InterPro: IPR009861 This family consists of several mammalian DAP10 membrane proteins. In activated mouse natural killer (NK) cells, the NKG2D receptor associates with two intracellular adaptors, DAP10 and DAP12, which trigger phosphatidyl inositol 3 kinase (PI3K) and Syk family protein tyrosine kinases, respectively. It has been suggested that the DAP10-PI3K pathway is sufficient to initiate NKG2D-mediated killing of target cells [].
Probab=24.04 E-value=1.5e+02 Score=23.13 Aligned_cols=31 Identities=10% Similarity=0.051 Sum_probs=19.9
Q ss_pred HHHHHhhhhhccccCCCCCCCCCCccccccCCC
Q 019718 283 ITVLSGTIILHATREHEQTTAPVGTVTWYVSGD 315 (336)
Q Consensus 283 ~~~i~GV~lLs~~~~~~~~~~~~~~~~~~~~~~ 315 (336)
++++..|+..++ ...++++.+++.|...|+|
T Consensus 48 LLIv~~vy~car--~r~r~~~~~~kvYiNmp~~ 78 (79)
T PF07213_consen 48 LLIVLVVYYCAR--PRRRPTQEDDKVYINMPGR 78 (79)
T ss_pred HHHHHHHHhhcc--cccCCcccCCEEEEeCCCC
Confidence 445555666665 4444556778888877765
No 113
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=23.95 E-value=42 Score=32.47 Aligned_cols=56 Identities=16% Similarity=0.217 Sum_probs=45.8
Q ss_pred HHHHHHHHHHhhcchhHhhhhhhhHHHHHHHHHHHHHhcccccccchhhHHHhhcce
Q 019718 63 VGEVANFVAYVYAPAVLVTPLGALSIIIRYAVLAHFMLKERLQKMGILGCITCIVGS 119 (336)
Q Consensus 63 ~g~~~~~~al~~ap~slV~Pl~a~~lv~~~~~la~~~l~e~~~~~~~~G~~li~~G~ 119 (336)
++...|-..|.+.|.+.-+-==++..+|| .+++..+||+|-+..-..+|.+|+.|-
T Consensus 114 ~mI~fnnlcL~yVgVaFYyvgRsLttvFt-VlLtyvllkqkTs~~~~~~C~lIi~GF 169 (347)
T KOG1442|consen 114 LMISFNNLCLKYVGVAFYYVGRSLTTVFT-VLLTYVLLKQKTSFFALGCCLLIILGF 169 (347)
T ss_pred eehhccceehhhcceEEEEeccchhhhHH-HHhHHhhcccccccccceeehhheehh
Confidence 34446666677777777666678899999 999999999999999899998888883
No 114
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=22.82 E-value=2.4e+02 Score=27.40 Aligned_cols=59 Identities=22% Similarity=0.252 Sum_probs=41.1
Q ss_pred HHHHHHHHHHhhcccccc---chhhhHHHHHHHHHHHHHHHHhcccCCCChhHHHHHHHHHHHHHHhhhhhcccc
Q 019718 225 VVTQLNYLNKALDTFNAA---IVSPVYYVMFTTLTIIASAIMFKDWSGQDVSGIASEICGFITVLSGTIILHATR 296 (336)
Q Consensus 225 ~~~Q~~~Ln~aL~~~~~~---~v~P~~~v~~~~~~i~~G~i~f~E~~~~~~~~~~~~~~G~~~~i~GV~lLs~~~ 296 (336)
.+.-.||-=+-+...|++ ...|++ +++-+-++++| +.+.++ ++|..+.+.||+++.|.+
T Consensus 110 gvmlmyya~~~mslaDA~vItFssPvf-------t~ifaw~~LkE--~~t~~e----aL~s~itl~GVVLIvRPp 171 (346)
T KOG4510|consen 110 GVMLMYYALMYMSLADAVVITFSSPVF-------TIIFAWAFLKE--PFTKFE----ALGSLITLLGVVLIVRPP 171 (346)
T ss_pred HHHHHHHHHhhcchhheEEEEecChHH-------HHHHHHHHHcC--CCcHHH----HHHHHHhhheEEEEecCC
Confidence 444555655666667774 456765 66667889999 556664 567788999999998654
No 115
>TIGR02106 cyd_oper_ybgT cyd operon protein YbgT. This model describes a very small (as short as 33 amino acids) protein of unknown function, essentially always found in an operon with CydAB, subunits of the cytochrome d terminal oxidase. It begins with an aromatic motif MWYFXW and appears to contain a membrane-spanning helix. This protein appears to be restricted to the Proteobacteria and exist in a single copy only. We suggest it may be a membrane subunit of the terminal oxidase. The family is named after the E. coli member YbgT. This model excludes the apparently related protein YccB.
Probab=21.89 E-value=1.2e+02 Score=19.27 Aligned_cols=20 Identities=20% Similarity=0.071 Sum_probs=16.7
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 019718 5 ENSKGLILAVASSAFIGSSF 24 (336)
Q Consensus 5 ~~~iGv~LAl~sa~~~a~G~ 24 (336)
.|++|+.+|+.-++++++-+
T Consensus 5 aWilG~~lA~~~~v~~a~w~ 24 (30)
T TIGR02106 5 AWILGTLLACAFGVLNAMWL 24 (30)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 37789999999999888765
No 116
>PF06157 DUF973: Protein of unknown function (DUF973); InterPro: IPR009321 This family consists of several hypothetical archaeal proteins of unknown function.
Probab=21.62 E-value=7.3e+02 Score=23.89 Aligned_cols=107 Identities=14% Similarity=0.187 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHhhhccCCCccCCCccccchhhhHHHHHHHHHHHHHHHHHHHh-----hcchhHhhh
Q 019718 8 KGLILAVASSAFIGSSFILKKKGLKRAGASGTRAGVGGYTYLLEPLWWAGMVTMIVGEVANFVAYV-----YAPAVLVTP 82 (336)
Q Consensus 8 iGv~LAl~sa~~~a~G~vlqk~~~~~~~~~~~~~~~~~~~~~~~p~W~~G~~~~~~g~~~~~~al~-----~ap~slV~P 82 (336)
.++...+++.+..-+++...|++.++..+.+.+-+ ....-.-.-.+|..+.++|.+..+.++. +.-..+-..
T Consensus 47 ~~i~~~ii~lvl~iia~~~lr~GF~~L~~~~~~~~---iG~tG~~Lilig~il~iig~i~~i~~~~~~~~~~~l~~ig~i 123 (285)
T PF06157_consen 47 VAIISLIIGLVLGIIAFYRLRRGFRILSSYDRDVG---IGKTGATLILIGYILIIIGAILAIISLFSILAGLILLLIGAI 123 (285)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcc---chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666777778888776554222211 1222233445666666666654443211 111111122
Q ss_pred hhhhHHHHHHHHHHHHHhcccccccc-hhhHHHhhcce
Q 019718 83 LGALSIIIRYAVLAHFMLKERLQKMG-ILGCITCIVGS 119 (336)
Q Consensus 83 l~a~~lv~~~~~la~~~l~e~~~~~~-~~G~~li~~G~ 119 (336)
+.-++.++- . ++.+-++|+.+... ..|..+.+.+.
T Consensus 124 l~~IG~ILl-g-i~~yrlG~~y~~~~ikvgGIL~ii~~ 159 (285)
T PF06157_consen 124 LAFIGYILL-G-IGLYRLGSRYNNGLIKVGGILIIIPI 159 (285)
T ss_pred HHHHHHHHH-H-HHHHHHhhhhccCceehhhHHHHHHH
Confidence 333344443 2 46667777776554 45555655554
No 117
>PF09534 Trp_oprn_chp: Tryptophan-associated transmembrane protein (Trp_oprn_chp); InterPro: IPR019051 Members of this family are predicted transmembrane proteins with four membrane-spanning helices. Members are found in the Actinobacteria (Mycobacterium, Corynebacterium, Streptomyces), always associated with genes for tryptophan biosynthesis.
Probab=21.20 E-value=1.5e+02 Score=26.84 Aligned_cols=44 Identities=7% Similarity=-0.003 Sum_probs=28.8
Q ss_pred CCChhH-HHHHHHHHHHHHHhhhhhccccCCCCC---CCCCCcccccc
Q 019718 269 GQDVSG-IASEICGFITVLSGTIILHATREHEQT---TAPVGTVTWYV 312 (336)
Q Consensus 269 ~~~~~~-~~~~~~G~~~~i~GV~lLs~~~~~~~~---~~~~~~~~~~~ 312 (336)
..++|. ++..+.|.++++.|+.++-+.+.-+.. -|++++...+-
T Consensus 117 ~~t~wp~~la~~gg~l~~~agvl~~~~~~~w~~~s~RYe~~~ar~~~~ 164 (189)
T PF09534_consen 117 AVTAWPPWLALAGGVLALAAGVLLARRGRRWPGMSSRYERPAARRAAA 164 (189)
T ss_pred eeecHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCCCCcccccc
Confidence 345666 889999999999999988776544432 24444444333
No 118
>PF03605 DcuA_DcuB: Anaerobic c4-dicarboxylate membrane transporter; InterPro: IPR004668 These proteins are members of the C4-Dicarboxylate Uptake (Dcu) family. Most proteins in this family are predicted to have 12 GES predicted transmembrane regions; however the one member whose membrane topology has been experimentally determined has 10 transmembrane regions, with both the N- and C-termini localized to the periplasm []. The DcuA and DcuB proteins are involved in the transport of aspartate, malate, fumarate and succinate in many species [, , ], and are thought to function as antiporters with any two of these substrates. Since DcuA is encoded in an operon with the gene for aspartase, and DcuB is encoded in an operon with the gene for fumarase, their physiological functions may be to catalyze aspartate:fumarate and fumarate:malate exchange during the anaerobic utilization of aspartate and fumarate, respectively []. The Escherichia coli DcuA and DcuB proteins have very different expression patterns []. DcuA is constitutively expressed; DcuB is strongly induced anaerobically by FNR and C4-dicarboxylates, while it is repressed by nitrate and subject to CRP-mediated catabolite repression.; GO: 0015556 C4-dicarboxylate transmembrane transporter activity, 0015740 C4-dicarboxylate transport, 0016021 integral to membrane
Probab=20.66 E-value=1.3e+02 Score=30.03 Aligned_cols=50 Identities=18% Similarity=0.312 Sum_probs=30.4
Q ss_pred hhHhhhhhhhHHHHHHHHHHHHHhcc---------------------------cccccchhhHHHhhcceeEEEEecC
Q 019718 77 AVLVTPLGALSIIIRYAVLAHFMLKE---------------------------RLQKMGILGCITCIVGSVVIVIHAP 127 (336)
Q Consensus 77 ~slV~Pl~a~~lv~~~~~la~~~l~e---------------------------~~~~~~~~G~~li~~G~~lvv~~~~ 127 (336)
+.+.-|-.-++.+.. ++.+.+.=|| ++++.-+.++.+-..|++.++.++.
T Consensus 166 L~V~iPat~ig~~~~-a~~~~~~GkeL~~Dp~yq~rl~~g~~~~~~~~~~~~~~~~~~Ak~SV~iFl~gv~~VV~~g~ 242 (364)
T PF03605_consen 166 LAVTIPATLIGVLVA-AFVSSRRGKELDDDPEYQERLADGLVKPPIKEESTEKELPPSAKLSVLIFLLGVVAVVLYGS 242 (364)
T ss_pred HHhhHHHHHHHHHHH-HHHHHhcCCccccCHHHHHHHhccccccccccccccccCChhhHHHHHHHHHHHHHHHHHHH
Confidence 345567777788888 7777665222 2333445667777777666655553
Done!