Query 019718
Match_columns 336
No_of_seqs 138 out of 672
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 06:05:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019718.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019718hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3b5d_A Multidrug transporter E 98.7 6.9E-08 2.4E-12 78.4 9.3 98 11-124 5-103 (110)
2 2i68_A Protein EMRE; transmemb 98.5 8E-08 2.7E-12 81.2 4.6 98 11-124 5-103 (137)
3 2i68_A Protein EMRE; transmemb 97.8 6.5E-05 2.2E-09 63.2 8.1 68 223-296 38-105 (137)
4 3b5d_A Multidrug transporter E 97.4 0.0017 5.9E-08 52.2 11.5 67 224-296 39-105 (110)
5 3o7q_A L-fucose-proton symport 24.2 3.9E+02 0.013 24.0 11.8 21 164-184 83-103 (438)
6 2bzw_B BCL2-antagonist of cell 21.5 6.2 0.00021 23.2 -2.1 9 327-335 14-23 (27)
7 1pw4_A Glycerol-3-phosphate tr 17.9 3.5E+02 0.012 24.3 8.0 19 164-182 84-102 (451)
8 3arc_J Photosystem II reaction 16.9 1.2E+02 0.004 19.6 2.8 11 50-60 7-17 (40)
9 2zxe_G FXYD10, phospholemman-l 13.4 1E+02 0.0035 22.6 2.2 27 272-298 18-44 (74)
10 2jp3_A FXYD domain-containing 12.8 95 0.0032 22.4 1.8 25 272-296 16-40 (67)
No 1
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.69 E-value=6.9e-08 Score=78.37 Aligned_cols=98 Identities=14% Similarity=0.114 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHHHHHHHhHHhhhccCCCccCCCccccchhhhHHHHHHHHHHHHHHHHHHHhhcchhHhhhh-hhhHHH
Q 019718 11 ILAVASSAFIGSSFILKKKGLKRAGASGTRAGVGGYTYLLEPLWWAGMVTMIVGEVANFVAYVYAPAVLVTPL-GALSII 89 (336)
Q Consensus 11 ~LAl~sa~~~a~G~vlqk~~~~~~~~~~~~~~~~~~~~~~~p~W~~G~~~~~~g~~~~~~al~~ap~slV~Pl-~a~~lv 89 (336)
.+-+++.++-+.|....|++. + ..+.+.++.+..++.+++.+...++...|.+.+-|+ .+++.+
T Consensus 5 l~l~~a~~~e~~~~~~lK~s~------~---------~~~~~~~~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v 69 (110)
T 3b5d_A 5 IYLGGAILAEVIGTTLMKFSE------G---------FTRLWPSVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIV 69 (110)
T ss_pred HHHHHHHHHHHHHHHHHHhcc------C---------cchHHHHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHH
Confidence 445667788888888888852 1 012345677788899999999999999999999999 899999
Q ss_pred HHHHHHHHHHhcccccccchhhHHHhhcceeEEEE
Q 019718 90 IRYAVLAHFMLKERLQKMGILGCITCIVGSVVIVI 124 (336)
Q Consensus 90 ~~~~~la~~~l~e~~~~~~~~G~~li~~G~~lvv~ 124 (336)
++ .+++.+++||+++..++.|+.++++|++++..
T Consensus 70 ~~-~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~ 103 (110)
T 3b5d_A 70 LI-SLLSWGFFGQRLDLPAIIGMMLICAGVLIINL 103 (110)
T ss_pred HH-HHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 99 99999999999999999999999999877644
No 2
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.49 E-value=8e-08 Score=81.16 Aligned_cols=98 Identities=14% Similarity=0.114 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHHHHHHHhHHhhhccCCCccCCCccccchhhhHHHHHHHHHHHHHHHHHHHhhcchhHhhhh-hhhHHH
Q 019718 11 ILAVASSAFIGSSFILKKKGLKRAGASGTRAGVGGYTYLLEPLWWAGMVTMIVGEVANFVAYVYAPAVLVTPL-GALSII 89 (336)
Q Consensus 11 ~LAl~sa~~~a~G~vlqk~~~~~~~~~~~~~~~~~~~~~~~p~W~~G~~~~~~g~~~~~~al~~ap~slV~Pl-~a~~lv 89 (336)
++-+++.++-+.|..+.|++. + ..+.+.++.|.+++++++.++..++...|++.+.|+ .+++.+
T Consensus 5 l~Ll~ail~ev~~~~~lK~s~------g---------~~~~~~~~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv 69 (137)
T 2i68_A 5 IYLGGAILAEVIGTTLMKFSE------G---------FTRLWPSVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIV 69 (137)
T ss_dssp HHHHHHHHHHHHHHHHC---------------------------CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhc------c---------cchHHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Confidence 344567777888888888862 0 012344578888999999999999999999999999 899999
Q ss_pred HHHHHHHHHHhcccccccchhhHHHhhcceeEEEE
Q 019718 90 IRYAVLAHFMLKERLQKMGILGCITCIVGSVVIVI 124 (336)
Q Consensus 90 ~~~~~la~~~l~e~~~~~~~~G~~li~~G~~lvv~ 124 (336)
++ .+++.+++||+++..+++|++++++|++++..
T Consensus 70 ~~-~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~ 103 (137)
T 2i68_A 70 LI-SLLSWGFFGQRLDLPAIIGMMLICAGVLIINL 103 (137)
T ss_dssp HH-HHHHHHHHC------CHHHHHHHHHHHHHHHH
T ss_pred HH-HHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 99 99999999999999999999999999877643
No 3
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=97.78 E-value=6.5e-05 Score=63.21 Aligned_cols=68 Identities=16% Similarity=0.278 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHhhccccccchhhhHHHHHHHHHHHHHHHHhcccCCCChhHHHHHHHHHHHHHHhhhhhcccc
Q 019718 223 VCVVTQLNYLNKALDTFNAAIVSPVYYVMFTTLTIIASAIMFKDWSGQDVSGIASEICGFITVLSGTIILHATR 296 (336)
Q Consensus 223 ~~~~~Q~~~Ln~aL~~~~~~~v~P~~~v~~~~~~i~~G~i~f~E~~~~~~~~~~~~~~G~~~~i~GV~lLs~~~ 296 (336)
++...-..++++++++.|++..+|+....-++.+.+.|.++|+|... +.+ .+|.++++.||+++...+
T Consensus 38 ~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls--~~~----~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 38 ICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLD--LPA----IIGMMLICAGVLIINLLS 105 (137)
T ss_dssp HHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC--------C----HHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCC--HHH----HHHHHHHHHHHHHHhcCC
Confidence 34444456899999999999999998888899999999999999553 433 578888999999998654
No 4
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=97.43 E-value=0.0017 Score=52.18 Aligned_cols=67 Identities=18% Similarity=0.289 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHhhccccccchhhhHHHHHHHHHHHHHHHHhcccCCCChhHHHHHHHHHHHHHHhhhhhcccc
Q 019718 224 CVVTQLNYLNKALDTFNAAIVSPVYYVMFTTLTIIASAIMFKDWSGQDVSGIASEICGFITVLSGTIILHATR 296 (336)
Q Consensus 224 ~~~~Q~~~Ln~aL~~~~~~~v~P~~~v~~~~~~i~~G~i~f~E~~~~~~~~~~~~~~G~~~~i~GV~lLs~~~ 296 (336)
+...-..++++++|+.|.+..+|+....-++.+.+.|.++|+|.. ++.+ .+|..+++.||++++..+
T Consensus 39 ~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~--s~~~----~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 39 CYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRL--DLPA----IIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCC--CHHH----HHHHHHHHHHHHHHhcCC
Confidence 334445688999999999999999888999999999999999954 4544 578888999999998654
No 5
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=24.20 E-value=3.9e+02 Score=23.96 Aligned_cols=21 Identities=0% Similarity=-0.206 Sum_probs=12.2
Q ss_pred eecccCCCcchhhHHHHHHhh
Q 019718 164 HFEPRCGQTNILVYLGICSLM 184 (336)
Q Consensus 164 ~~~~~~g~~~~~~y~~isgll 184 (336)
+...|+|+|+.+..+.+...+
T Consensus 83 ~l~dr~g~r~~l~~~~~~~~~ 103 (438)
T 3o7q_A 83 ILMKKLSYKAGIITGLFLYAL 103 (438)
T ss_dssp HHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHhcchHHHHHHHHHHHH
Confidence 345678877766554443333
No 6
>2bzw_B BCL2-antagonist of cell death; transcription, apoptosis, phosphorylation, transcription complex, alternative splicing, mitochondrion; 2.3A {Mus musculus} PDB: 1g5j_B
Probab=21.45 E-value=6.2 Score=23.17 Aligned_cols=9 Identities=22% Similarity=0.409 Sum_probs=4.6
Q ss_pred cccc-ccccc
Q 019718 327 TIHN-SDYYV 335 (336)
Q Consensus 327 ~~~~-~~~~~ 335 (336)
+||| ||.|+
T Consensus 14 eLRRMSDEF~ 23 (27)
T 2bzw_B 14 ELRRMSDEFE 23 (27)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHhHHHH
Confidence 3455 55554
No 7
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=17.95 E-value=3.5e+02 Score=24.32 Aligned_cols=19 Identities=16% Similarity=-0.036 Sum_probs=10.9
Q ss_pred eecccCCCcchhhHHHHHH
Q 019718 164 HFEPRCGQTNILVYLGICS 182 (336)
Q Consensus 164 ~~~~~~g~~~~~~y~~isg 182 (336)
+...|+|+|+.+..+.+..
T Consensus 84 ~l~dr~g~r~~l~~~~~~~ 102 (451)
T 1pw4_A 84 SVSDRSNPRVFLPAGLILA 102 (451)
T ss_dssp HHHHHSCHHHHHHHHHHHH
T ss_pred HHHHhcCchHHHHHHHHHH
Confidence 3456777777655544433
No 8
>3arc_J Photosystem II reaction center protein J; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_J* 3a0b_J* 3a0h_J* 2axt_J* 3bz1_J* 3bz2_J* 3kzi_J* 3prq_J* 3prr_J*
Probab=16.90 E-value=1.2e+02 Score=19.64 Aligned_cols=11 Identities=36% Similarity=0.700 Sum_probs=8.9
Q ss_pred hhhhHHHHHHH
Q 019718 50 LEPLWWAGMVT 60 (336)
Q Consensus 50 ~~p~W~~G~~~ 60 (336)
|-|+|++|.+.
T Consensus 7 RiPLWlvgtv~ 17 (40)
T 3arc_J 7 RIPLWIVATVA 17 (40)
T ss_dssp SSCHHHHHHHH
T ss_pred cccEEeeeeeh
Confidence 56999999865
No 9
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=13.45 E-value=1e+02 Score=22.61 Aligned_cols=27 Identities=22% Similarity=0.217 Sum_probs=20.3
Q ss_pred hhHHHHHHHHHHHHHHhhhhhccccCC
Q 019718 272 VSGIASEICGFITVLSGTIILHATREH 298 (336)
Q Consensus 272 ~~~~~~~~~G~~~~i~GV~lLs~~~~~ 298 (336)
.....+++++.++.+.|+.++-+++=.
T Consensus 18 tLRigGLifA~vLfi~GI~iilS~kcr 44 (74)
T 2zxe_G 18 RLRVVGLIVAAVLCVIGIIILLAGKCR 44 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTC--
T ss_pred HheeccchhHHHHHHHHHHHHHcCccc
Confidence 456688899999999999888765543
No 10
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=12.78 E-value=95 Score=22.39 Aligned_cols=25 Identities=12% Similarity=0.194 Sum_probs=19.7
Q ss_pred hhHHHHHHHHHHHHHHhhhhhcccc
Q 019718 272 VSGIASEICGFITVLSGTIILHATR 296 (336)
Q Consensus 272 ~~~~~~~~~G~~~~i~GV~lLs~~~ 296 (336)
.....+++++.++.+.|+.++-+.+
T Consensus 16 tLRigGLifA~vLfi~GI~iilS~k 40 (67)
T 2jp3_A 16 SLQLGGLIFGGLLCIAGIALALSGK 40 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred HheecchhhHHHHHHHHHHHHHcCc
Confidence 4566888888888999998887654
Done!