Query 019718
Match_columns 336
No_of_seqs 138 out of 672
Neff 6.5
Searched_HMMs 13730
Date Mon Mar 25 06:05:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019718.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/019718hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 57.4 16 0.0012 31.1 8.4 17 45-61 15-31 (447)
2 d2axtj1 f.23.32.1 (J:7-40) Pho 16.7 57 0.0042 18.7 2.8 11 50-60 1-11 (34)
3 d1pw4a_ f.38.1.1 (A:) Glycerol 15.1 2.6E+02 0.019 22.7 8.4 10 140-149 244-253 (447)
4 d2axtl1 f.23.31.1 (L:1-37) Pho 6.8 2.2E+02 0.016 16.3 3.1 22 212-233 16-37 (37)
5 d1u7ga_ f.44.1.1 (A:) Ammonium 5.9 7.5E+02 0.054 20.9 11.6 34 229-262 297-330 (383)
6 d2dexx2 b.6.1.6 (X:4-112) Pept 4.3 1.3E+02 0.0097 21.7 1.2 16 299-314 54-69 (109)
7 d1umua_ b.87.1.1 (A:) UmuD' {E 3.9 1.5E+02 0.011 20.7 1.2 29 304-332 17-47 (105)
8 d1q90b_ f.21.1.2 (B:) Cytochro 3.9 3.2E+02 0.023 21.7 3.5 37 48-91 106-145 (212)
9 d3cx5c2 f.21.1.2 (C:1-261) Mit 3.7 3E+02 0.022 22.5 3.2 40 52-99 112-151 (261)
10 d2p7tc1 f.14.1.1 (C:86-119) Po 3.5 3.8E+02 0.027 14.7 2.4 23 77-101 9-31 (34)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=57.43 E-value=16 Score=31.06 Aligned_cols=17 Identities=6% Similarity=-0.181 Sum_probs=10.2
Q ss_pred ccccchhhhHHHHHHHH
Q 019718 45 GYTYLLEPLWWAGMVTM 61 (336)
Q Consensus 45 ~~~~~~~p~W~~G~~~~ 61 (336)
..+..||.+|.+-..++
T Consensus 15 ~~~~~~~~~w~i~~~~~ 31 (447)
T d1pw4a_ 15 IDPTYRRLRWQIFLGIF 31 (447)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred hccchhhHHHHHHHHHH
Confidence 34566777887644443
No 2
>d2axtj1 f.23.32.1 (J:7-40) Photosystem II reaction center protein J, PsbJ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=16.68 E-value=57 Score=18.72 Aligned_cols=11 Identities=36% Similarity=0.700 Sum_probs=8.3
Q ss_pred hhhhHHHHHHH
Q 019718 50 LEPLWWAGMVT 60 (336)
Q Consensus 50 ~~p~W~~G~~~ 60 (336)
|-|+|++|.+.
T Consensus 1 riPLWlv~tv~ 11 (34)
T d2axtj1 1 RIPLWIVATVA 11 (34)
T ss_dssp CCCHHHHHHHH
T ss_pred CCcEEEeeehh
Confidence 45899988865
No 3
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=15.07 E-value=2.6e+02 Score=22.69 Aligned_cols=10 Identities=0% Similarity=-0.157 Sum_probs=4.7
Q ss_pred HHhcChhHHH
Q 019718 140 ALATQPDFLI 149 (336)
Q Consensus 140 ~~~~~~~fl~ 149 (336)
+.++++.+..
T Consensus 244 ~~~~~~~~~~ 253 (447)
T d1pw4a_ 244 YVLPNKLLWY 253 (447)
T ss_dssp HTSSCHHHHH
T ss_pred HHHcCchHHH
Confidence 3444555443
No 4
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=6.78 E-value=2.2e+02 Score=16.27 Aligned_cols=22 Identities=9% Similarity=0.138 Sum_probs=15.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 019718 212 PQTWFFLTVAAVCVVTQLNYLN 233 (336)
Q Consensus 212 ~~~y~ll~~~v~~~~~Q~~~Ln 233 (336)
-..|-++++.+.+.++--||+|
T Consensus 16 sLy~GlLlifvl~vLFssYfFN 37 (37)
T d2axtl1 16 SLYLGLLLILVLALLFSSYFFN 37 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHHhcC
Confidence 3445677777777777777765
No 5
>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]}
Probab=5.85 E-value=7.5e+02 Score=20.92 Aligned_cols=34 Identities=18% Similarity=0.027 Sum_probs=25.4
Q ss_pred HHHHHHhhccccccchhhhHHHHHHHHHHHHHHH
Q 019718 229 LNYLNKALDTFNAAIVSPVYYVMFTTLTIIASAI 262 (336)
Q Consensus 229 ~~~Ln~aL~~~~~~~v~P~~~v~~~~~~i~~G~i 262 (336)
.+++.+-++.-|+.-+.|+--+.=....+..|..
T Consensus 297 ~~~l~~~~~iDD~~~~~~vHg~~Gi~G~l~~glf 330 (383)
T d1u7ga_ 297 VTMLKRLLRVDDPCDVFGVHGVCGIVGCIMTGIF 330 (383)
T ss_dssp HHHHHHHHCSCCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcccccccceEeehhhhHHHHHHHHHHh
Confidence 3456566889999999999877777766666653
No 6
>d2dexx2 b.6.1.6 (X:4-112) Peptidylarginine deiminase Pad4, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.35 E-value=1.3e+02 Score=21.75 Aligned_cols=16 Identities=19% Similarity=0.437 Sum_probs=5.2
Q ss_pred CCCCCCCCccccccCC
Q 019718 299 EQTTAPVGTVTWYVSG 314 (336)
Q Consensus 299 ~~~~~~~~~~~~~~~~ 314 (336)
+..+++.|+..|++|.
T Consensus 54 ~~~~~~~g~~rWpL~~ 69 (109)
T d2dexx2 54 PAKKKSTGSSTWPLDP 69 (109)
T ss_dssp ----------CEECCT
T ss_pred ccccccCCcccccCCC
Confidence 3356788999999993
No 7
>d1umua_ b.87.1.1 (A:) UmuD' {Escherichia coli [TaxId: 562]}
Probab=3.90 E-value=1.5e+02 Score=20.65 Aligned_cols=29 Identities=24% Similarity=0.336 Sum_probs=18.5
Q ss_pred CCCccccccCCCCCCCC--CCcCcccccccc
Q 019718 304 PVGTVTWYVSGDSLKGA--EEEHLITIHNSD 332 (336)
Q Consensus 304 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 332 (336)
++++-..|++|+||..+ .+.|.+=++|+.
T Consensus 17 ~~~~f~~rV~GdSM~~~gI~~GDlliVd~~~ 47 (105)
T d1umua_ 17 PSATYFVKASGDSMIDGGISDGDLLIVDSAI 47 (105)
T ss_dssp GGGEEEEECCSSTTGGGTCCTTCEEEEETTS
T ss_pred CCceEEEEEcCCccccCccCCCCEEEEEccc
Confidence 34455678889999633 566666666543
No 8
>d1q90b_ f.21.1.2 (B:) Cytochrome b6 subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=3.87 E-value=3.2e+02 Score=21.66 Aligned_cols=37 Identities=14% Similarity=0.288 Sum_probs=23.3
Q ss_pred cchhh---hHHHHHHHHHHHHHHHHHHHhhcchhHhhhhhhhHHHHH
Q 019718 48 YLLEP---LWWAGMVTMIVGEVANFVAYVYAPAVLVTPLGALSIIIR 91 (336)
Q Consensus 48 ~~~~p---~W~~G~~~~~~g~~~~~~al~~ap~slV~Pl~a~~lv~~ 91 (336)
.+|+| .|+.|+.++.+-....+..| +-|-+..+.--.
T Consensus 106 syk~pre~~W~~Gv~l~~l~m~~aftGY-------~Lpw~q~sywa~ 145 (212)
T d1q90b_ 106 GFKRPRELTWVTGVIMAVCTVSFGVTGY-------SLPWDQVGYWAV 145 (212)
T ss_dssp TTSSSCHHHHHHHHHHHHHHHHHHHHHH-------HTTCBHHHHHHH
T ss_pred cccCcccceehHhHHHHHHHHHHHHhhh-------hcchhhHHHHHH
Confidence 34555 69999998866555555543 456666665444
No 9
>d3cx5c2 f.21.1.2 (C:1-261) Mitochondrial cytochrome b subunit, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=3.73 E-value=3e+02 Score=22.53 Aligned_cols=40 Identities=23% Similarity=0.491 Sum_probs=24.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhcchhHhhhhhhhHHHHHHHHHHHHH
Q 019718 52 PLWWAGMVTMIVGEVANFVAYVYAPAVLVTPLGALSIIIRYAVLAHFM 99 (336)
Q Consensus 52 p~W~~G~~~~~~g~~~~~~al~~ap~slV~Pl~a~~lv~~~~~la~~~ 99 (336)
-.|+.|+.++.+-....+..| +-|-+..+.--. .+....+
T Consensus 112 ~~W~~Gv~l~~l~~~~af~GY-------~Lpw~q~s~w~~-~Vit~l~ 151 (261)
T d3cx5c2 112 TLWNVGVIIFILTIATAFLGY-------CCVYGQMSHWGA-TVITNLF 151 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-------HHHCBHHHHHHH-HHHHHGG
T ss_pred hhHHhhHHHHHHHHHHHHhhh-------hcCCCcchhhHH-HHHHHHH
Confidence 359999999866555555543 456666666555 4444443
No 10
>d2p7tc1 f.14.1.1 (C:86-119) Potassium channel protein {Streptomyces lividans [TaxId: 1916]}
Probab=3.52 E-value=3.8e+02 Score=14.69 Aligned_cols=23 Identities=17% Similarity=0.447 Sum_probs=14.4
Q ss_pred hhHhhhhhhhHHHHHHHHHHHHHhc
Q 019718 77 AVLVTPLGALSIIIRYAVLAHFMLK 101 (336)
Q Consensus 77 ~slV~Pl~a~~lv~~~~~la~~~l~ 101 (336)
...|+.+.+.++++. .+ +.|+.+
T Consensus 9 vvmvagits~glv~a-a~-atwfvg 31 (34)
T d2p7tc1 9 VVMVAGITSFGLVTA-AL-ATWFVG 31 (34)
T ss_dssp HHHHHHHHHHHHHHH-HH-HHHHHH
T ss_pred EEEEeccchhhhHHH-HH-HHHhhc
Confidence 345677777788877 55 444443
Done!