Query 019720
Match_columns 336
No_of_seqs 270 out of 1706
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 06:06:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019720.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019720hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l0b_A E3 ubiquitin-protein li 99.7 6.8E-18 2.3E-22 133.2 7.1 77 251-335 12-88 (91)
2 1x4j_A Ring finger protein 38; 99.7 9.9E-18 3.4E-22 127.2 3.5 68 259-335 4-71 (75)
3 2kiz_A E3 ubiquitin-protein li 99.6 1.8E-15 6.2E-20 112.6 6.2 53 283-335 10-62 (69)
4 2ep4_A Ring finger protein 24; 99.6 1.7E-15 5.8E-20 114.2 6.0 53 283-335 11-63 (74)
5 1iym_A EL5; ring-H2 finger, ub 99.6 1.2E-15 4.1E-20 108.5 4.2 51 285-335 3-54 (55)
6 2ect_A Ring finger protein 126 99.6 2.8E-15 9.5E-20 114.2 5.2 54 282-335 10-63 (78)
7 2ecl_A Ring-box protein 2; RNF 99.5 9.5E-15 3.2E-19 112.8 4.3 50 286-335 14-75 (81)
8 2ecm_A Ring finger and CHY zin 99.5 2.4E-14 8.2E-19 101.5 4.9 51 285-335 3-54 (55)
9 2ea6_A Ring finger protein 4; 99.5 3.4E-14 1.2E-18 105.0 5.2 54 283-336 11-68 (69)
10 3ng2_A RNF4, snurf, ring finge 99.4 3.9E-14 1.3E-18 105.5 4.0 52 284-335 7-62 (71)
11 3dpl_R Ring-box protein 1; ubi 99.4 8.6E-14 2.9E-18 113.2 5.0 49 286-334 36-99 (106)
12 1v87_A Deltex protein 2; ring- 99.4 8.6E-14 2.9E-18 113.3 5.1 50 286-335 24-93 (114)
13 2xeu_A Ring finger protein 4; 99.4 7.9E-14 2.7E-18 101.5 3.8 50 286-335 2-55 (64)
14 2d8s_A Cellular modulator of i 99.4 1.2E-13 4.1E-18 106.8 4.7 52 283-335 11-69 (80)
15 2d8t_A Dactylidin, ring finger 99.4 1.4E-13 4.9E-18 103.1 4.2 50 283-335 11-60 (71)
16 2djb_A Polycomb group ring fin 99.4 4.6E-13 1.6E-17 100.5 5.7 50 283-335 11-61 (72)
17 1chc_A Equine herpes virus-1 r 99.4 3.4E-13 1.2E-17 99.7 4.4 49 285-335 3-51 (68)
18 2ecn_A Ring finger protein 141 99.4 2.3E-13 8E-18 101.3 2.9 48 284-335 12-59 (70)
19 2ct2_A Tripartite motif protei 99.3 1.2E-12 4.1E-17 101.2 6.3 53 283-335 11-67 (88)
20 2csy_A Zinc finger protein 183 99.3 9.8E-13 3.3E-17 100.9 5.4 50 283-335 11-60 (81)
21 2yur_A Retinoblastoma-binding 99.3 1.7E-12 5.8E-17 98.1 5.5 50 282-334 10-62 (74)
22 2ecy_A TNF receptor-associated 99.3 1.5E-12 5.3E-17 95.9 4.8 49 284-335 12-61 (66)
23 2ysl_A Tripartite motif-contai 99.3 1.9E-12 6.4E-17 96.9 5.2 49 284-335 17-68 (73)
24 4a0k_B E3 ubiquitin-protein li 99.3 2.7E-13 9.1E-18 112.2 0.2 49 286-334 47-110 (117)
25 4ayc_A E3 ubiquitin-protein li 99.3 1.7E-12 5.7E-17 109.7 3.0 47 286-335 52-98 (138)
26 2ecw_A Tripartite motif-contai 99.2 8.1E-12 2.8E-16 95.5 6.0 49 284-335 16-70 (85)
27 4ap4_A E3 ubiquitin ligase RNF 99.2 3.9E-12 1.3E-16 105.0 4.0 51 285-335 5-59 (133)
28 1t1h_A Gspef-atpub14, armadill 99.2 7E-12 2.4E-16 95.2 4.9 49 284-335 5-54 (78)
29 2ysj_A Tripartite motif-contai 99.2 1.2E-11 4E-16 90.2 5.7 44 284-330 17-63 (63)
30 2ecv_A Tripartite motif-contai 99.2 9.1E-12 3.1E-16 95.2 5.4 49 284-335 16-70 (85)
31 2egp_A Tripartite motif-contai 99.2 2.2E-12 7.6E-17 97.8 1.7 49 284-335 9-64 (79)
32 2ecj_A Tripartite motif-contai 99.2 1.1E-11 3.7E-16 88.5 4.0 44 284-330 12-58 (58)
33 3lrq_A E3 ubiquitin-protein li 99.2 6.4E-12 2.2E-16 100.5 2.8 48 285-335 20-69 (100)
34 2ct0_A Non-SMC element 1 homol 99.2 1.8E-11 6.3E-16 93.2 4.8 52 282-335 10-63 (74)
35 2y43_A E3 ubiquitin-protein li 99.2 1E-11 3.5E-16 98.7 3.1 47 286-335 21-68 (99)
36 1g25_A CDK-activating kinase a 99.2 1.8E-11 6.3E-16 89.8 4.2 50 286-335 2-54 (65)
37 3ztg_A E3 ubiquitin-protein li 99.2 2.6E-11 8.9E-16 94.8 5.3 50 282-334 8-60 (92)
38 2ckl_A Polycomb group ring fin 99.1 1.9E-11 6.4E-16 98.7 4.0 48 285-335 13-61 (108)
39 4ap4_A E3 ubiquitin ligase RNF 99.1 2.3E-11 8E-16 100.3 4.1 51 285-335 70-124 (133)
40 3fl2_A E3 ubiquitin-protein li 99.1 2.4E-11 8.1E-16 100.5 3.3 48 285-335 50-98 (124)
41 2ckl_B Ubiquitin ligase protei 99.1 5.1E-11 1.7E-15 103.2 5.1 78 253-334 22-100 (165)
42 1jm7_A BRCA1, breast cancer ty 99.1 4.5E-11 1.5E-15 96.5 2.6 47 286-335 20-69 (112)
43 3l11_A E3 ubiquitin-protein li 99.0 2.9E-11 9.9E-16 98.6 0.3 48 284-334 12-60 (115)
44 3hct_A TNF receptor-associated 99.0 1E-10 3.5E-15 96.0 3.3 49 284-335 15-64 (118)
45 2vje_A E3 ubiquitin-protein li 99.0 1.1E-10 3.9E-15 86.0 2.6 48 285-335 6-56 (64)
46 1z6u_A NP95-like ring finger p 99.0 1.4E-10 4.8E-15 99.6 3.3 47 286-335 77-124 (150)
47 2kr4_A Ubiquitin conjugation f 99.0 3.7E-10 1.3E-14 87.8 5.4 49 284-335 11-59 (85)
48 1rmd_A RAG1; V(D)J recombinati 99.0 1.3E-10 4.5E-15 94.8 3.0 47 286-335 22-69 (116)
49 1e4u_A Transcriptional repress 99.0 3.2E-10 1.1E-14 87.0 4.3 51 284-335 8-61 (78)
50 1wgm_A Ubiquitin conjugation f 98.9 8.3E-10 2.8E-14 88.3 5.6 49 284-335 19-68 (98)
51 1bor_A Transcription factor PM 98.9 1.6E-10 5.4E-15 82.8 1.2 45 285-335 4-48 (56)
52 2kre_A Ubiquitin conjugation f 98.9 6.2E-10 2.1E-14 89.3 4.8 49 284-335 26-74 (100)
53 2vje_B MDM4 protein; proto-onc 98.9 3.3E-10 1.1E-14 83.2 2.3 48 285-335 5-55 (63)
54 2y1n_A E3 ubiquitin-protein li 98.9 9.3E-10 3.2E-14 107.8 5.1 46 287-335 332-378 (389)
55 3knv_A TNF receptor-associated 98.9 6E-10 2E-14 94.7 2.0 48 284-334 28-76 (141)
56 1vyx_A ORF K3, K3RING; zinc-bi 98.8 1.7E-09 6E-14 78.9 4.0 48 285-335 4-58 (60)
57 4ic3_A E3 ubiquitin-protein li 98.8 6.1E-10 2.1E-14 84.2 1.0 43 286-335 23-66 (74)
58 1jm7_B BARD1, BRCA1-associated 98.8 6E-10 2E-14 91.2 0.7 45 286-335 21-66 (117)
59 3k1l_B Fancl; UBC, ring, RWD, 98.8 1.7E-09 5.7E-14 103.9 2.0 52 284-335 305-372 (381)
60 2ea5_A Cell growth regulator w 98.8 7.2E-09 2.4E-13 77.3 4.8 48 282-336 10-58 (68)
61 2c2l_A CHIP, carboxy terminus 98.7 9.1E-09 3.1E-13 94.8 5.2 50 283-335 204-254 (281)
62 3hcs_A TNF receptor-associated 98.7 6.3E-09 2.2E-13 90.3 3.3 49 284-335 15-64 (170)
63 2yu4_A E3 SUMO-protein ligase 98.7 7.6E-09 2.6E-13 81.7 3.4 46 285-333 5-59 (94)
64 2ecg_A Baculoviral IAP repeat- 98.6 5.5E-09 1.9E-13 78.9 1.2 44 286-336 24-68 (75)
65 1wim_A KIAA0161 protein; ring 98.6 2.8E-08 9.7E-13 78.1 3.6 49 285-333 3-61 (94)
66 2f42_A STIP1 homology and U-bo 98.5 6.4E-08 2.2E-12 85.5 4.5 50 283-335 102-152 (179)
67 2yho_A E3 ubiquitin-protein li 98.5 1.9E-08 6.6E-13 77.0 0.7 43 286-335 17-60 (79)
68 2bay_A PRE-mRNA splicing facto 98.3 1.7E-07 5.7E-12 68.5 2.6 46 287-335 3-49 (61)
69 3t6p_A Baculoviral IAP repeat- 98.3 9.4E-08 3.2E-12 92.5 1.1 44 285-335 293-337 (345)
70 3htk_C E3 SUMO-protein ligase 98.2 5.8E-07 2E-11 83.5 3.9 50 284-335 178-231 (267)
71 3vk6_A E3 ubiquitin-protein li 98.0 3.6E-06 1.2E-10 67.0 3.6 45 289-335 3-48 (101)
72 3nw0_A Non-structural maintena 97.6 2.3E-05 7.7E-10 72.0 2.9 48 286-335 179-228 (238)
73 2jun_A Midline-1; B-BOX, TRIM, 94.4 0.025 8.6E-07 44.1 3.1 35 286-320 2-36 (101)
74 2lri_C Autoimmune regulator; Z 92.6 0.067 2.3E-06 39.2 2.7 46 285-333 10-59 (66)
75 2ko5_A Ring finger protein Z; 92.4 0.07 2.4E-06 41.8 2.6 46 285-335 26-72 (99)
76 1wil_A KIAA1045 protein; ring 88.5 0.38 1.3E-05 36.9 3.6 34 283-320 11-47 (89)
77 1we9_A PHD finger family prote 86.7 0.16 5.5E-06 36.4 0.6 49 285-333 4-58 (64)
78 2l5u_A Chromodomain-helicase-D 85.5 0.42 1.4E-05 34.1 2.3 47 284-333 8-58 (61)
79 1f62_A Transcription factor WS 83.7 0.43 1.5E-05 32.5 1.6 46 288-333 1-50 (51)
80 2yql_A PHD finger protein 21A; 81.6 0.21 7.1E-06 35.0 -0.8 46 284-332 6-55 (56)
81 1mm2_A MI2-beta; PHD, zinc fin 80.1 0.42 1.4E-05 34.1 0.4 47 285-334 7-57 (61)
82 2k16_A Transcription initiatio 79.9 0.33 1.1E-05 35.9 -0.2 50 285-335 16-70 (75)
83 3m62_A Ubiquitin conjugation f 79.8 1.3 4.6E-05 47.7 4.4 51 282-335 886-937 (968)
84 2kgg_A Histone demethylase jar 77.0 2 7E-05 29.4 3.2 43 289-331 4-52 (52)
85 2ysm_A Myeloid/lymphoid or mix 76.2 0.74 2.5E-05 36.5 0.8 38 285-322 5-42 (111)
86 2l43_A N-teminal domain from h 75.7 3.8 0.00013 31.3 4.8 51 283-333 21-75 (88)
87 1wep_A PHF8; structural genomi 74.9 2.7 9.1E-05 31.3 3.6 48 286-333 10-63 (79)
88 1xwh_A Autoimmune regulator; P 74.6 0.43 1.5E-05 34.5 -0.9 46 285-333 6-55 (66)
89 1wem_A Death associated transc 74.0 1.5 5.3E-05 32.3 2.1 47 287-333 15-70 (76)
90 1fp0_A KAP-1 corepressor; PHD 73.6 1.2 4.1E-05 34.4 1.4 48 282-332 20-71 (88)
91 2vpb_A Hpygo1, pygopus homolog 72.1 2.8 9.5E-05 30.3 3.0 35 284-318 5-41 (65)
92 2e6r_A Jumonji/ARID domain-con 71.9 0.57 2E-05 36.3 -0.8 50 283-332 12-65 (92)
93 1weu_A Inhibitor of growth fam 69.9 3.1 0.00011 32.2 3.0 42 287-334 35-86 (91)
94 2yt5_A Metal-response element- 68.1 2.7 9.1E-05 29.9 2.2 49 285-333 4-61 (66)
95 1wen_A Inhibitor of growth fam 67.3 3.5 0.00012 30.2 2.7 42 286-334 15-66 (71)
96 2dj7_A Actin-binding LIM prote 66.1 6 0.0002 29.1 3.9 41 285-335 13-53 (80)
97 2puy_A PHD finger protein 21A; 65.6 0.78 2.7E-05 32.4 -1.1 46 285-333 3-52 (60)
98 3v43_A Histone acetyltransfera 63.5 1.9 6.6E-05 34.2 0.7 46 287-332 61-111 (112)
99 3v43_A Histone acetyltransfera 61.9 8.4 0.00029 30.4 4.2 33 286-318 4-42 (112)
100 2cu8_A Cysteine-rich protein 2 61.1 7 0.00024 28.0 3.4 40 286-335 8-47 (76)
101 1weo_A Cellulose synthase, cat 60.3 16 0.00055 28.2 5.3 51 285-335 14-69 (93)
102 2lv9_A Histone-lysine N-methyl 60.0 3 0.0001 32.4 1.2 46 287-332 27-75 (98)
103 2co8_A NEDD9 interacting prote 58.9 9.7 0.00033 28.0 3.9 41 284-334 12-52 (82)
104 4gne_A Histone-lysine N-methyl 57.7 6.4 0.00022 31.3 2.8 42 285-332 13-61 (107)
105 2ku3_A Bromodomain-containing 56.9 10 0.00035 27.7 3.6 49 284-332 13-65 (71)
106 1x62_A C-terminal LIM domain p 56.5 11 0.00037 27.3 3.8 39 285-334 13-51 (79)
107 1iml_A CRIP, cysteine rich int 56.1 5.3 0.00018 28.7 2.0 43 286-332 26-69 (76)
108 1wee_A PHD finger family prote 54.8 2 6.8E-05 31.4 -0.6 46 286-332 15-65 (72)
109 2e6s_A E3 ubiquitin-protein li 53.1 3 0.0001 31.1 0.1 44 288-332 27-76 (77)
110 1wev_A Riken cDNA 1110020M19; 51.8 2.8 9.4E-05 32.0 -0.3 49 285-333 14-72 (88)
111 2xb1_A Pygopus homolog 2, B-ce 51.2 8.3 0.00028 30.3 2.5 47 287-333 3-61 (105)
112 2cs3_A Protein C14ORF4, MY039 51.2 14 0.00047 28.1 3.5 38 285-323 13-52 (93)
113 2lbm_A Transcriptional regulat 51.0 15 0.00052 30.6 4.2 45 285-332 61-116 (142)
114 1z60_A TFIIH basal transcripti 50.4 7.8 0.00027 27.5 1.9 42 288-330 16-58 (59)
115 3asl_A E3 ubiquitin-protein li 49.4 3.2 0.00011 30.3 -0.2 44 289-333 20-69 (70)
116 3shb_A E3 ubiquitin-protein li 47.2 2.6 9E-05 31.5 -1.0 41 289-332 28-76 (77)
117 2vnf_A ING 4, P29ING4, inhibit 46.8 3.4 0.00012 29.2 -0.4 40 287-332 9-58 (60)
118 3c6w_A P28ING5, inhibitor of g 46.3 3.7 0.00013 28.9 -0.3 40 287-332 8-57 (59)
119 3i2d_A E3 SUMO-protein ligase 46.0 16 0.00053 35.3 3.9 45 287-334 249-298 (371)
120 1x64_A Alpha-actinin-2 associa 44.2 27 0.00093 25.7 4.4 40 285-335 23-62 (89)
121 4fo9_A E3 SUMO-protein ligase 43.6 18 0.00062 34.7 4.0 46 287-334 215-264 (360)
122 2d8y_A Eplin protein; LIM doma 43.5 27 0.00093 25.8 4.3 39 286-334 14-52 (91)
123 3o70_A PHD finger protein 13; 43.2 4.5 0.00015 29.4 -0.3 46 286-332 18-66 (68)
124 1x4l_A Skeletal muscle LIM-pro 42.1 20 0.00069 25.1 3.2 39 287-334 5-45 (72)
125 2gmg_A Hypothetical protein PF 40.9 6.2 0.00021 31.3 0.2 21 308-333 73-93 (105)
126 3kqi_A GRC5, PHD finger protei 40.9 8.8 0.0003 28.1 1.0 48 285-332 7-60 (75)
127 1g47_A Pinch protein; LIM doma 40.0 25 0.00086 24.9 3.5 40 286-334 10-49 (77)
128 1wew_A DNA-binding family prot 39.6 12 0.0004 27.6 1.6 46 287-333 16-72 (78)
129 1x61_A Thyroid receptor intera 39.6 26 0.0009 24.4 3.5 34 287-322 33-66 (72)
130 3ql9_A Transcriptional regulat 39.4 36 0.0012 27.8 4.6 45 285-332 55-110 (129)
131 1x63_A Skeletal muscle LIM-pro 38.8 25 0.00084 25.3 3.3 39 288-335 16-54 (82)
132 2d8v_A Zinc finger FYVE domain 38.4 19 0.00065 26.2 2.4 33 284-320 5-38 (67)
133 3ask_A E3 ubiquitin-protein li 37.9 7.5 0.00026 35.0 0.3 46 288-333 175-225 (226)
134 2dar_A PDZ and LIM domain prot 37.5 22 0.00076 26.3 2.9 39 286-335 24-62 (90)
135 2rsd_A E3 SUMO-protein ligase 37.4 4.2 0.00014 29.3 -1.2 45 287-332 9-64 (68)
136 1x4k_A Skeletal muscle LIM-pro 37.2 23 0.0008 24.7 2.8 38 288-334 6-43 (72)
137 2d8z_A Four and A half LIM dom 36.9 32 0.0011 23.8 3.5 26 288-316 6-31 (70)
138 1wyh_A SLIM 2, skeletal muscle 36.5 28 0.00097 24.2 3.2 38 288-334 6-43 (72)
139 2cor_A Pinch protein; LIM doma 36.4 29 0.00099 25.0 3.3 37 287-334 15-51 (79)
140 1zbd_B Rabphilin-3A; G protein 35.4 15 0.0005 30.3 1.7 34 285-318 53-88 (134)
141 1x68_A FHL5 protein; four-and- 35.4 24 0.00081 25.2 2.7 38 288-334 6-45 (76)
142 2ysm_A Myeloid/lymphoid or mix 34.7 5.3 0.00018 31.4 -1.1 44 289-332 56-103 (111)
143 2kwj_A Zinc finger protein DPF 34.3 23 0.00077 28.0 2.6 33 288-320 2-41 (114)
144 2d8x_A Protein pinch; LIM doma 34.3 23 0.0008 24.6 2.4 37 287-334 5-41 (70)
145 2g6q_A Inhibitor of growth pro 33.5 7.9 0.00027 27.5 -0.3 41 287-333 10-60 (62)
146 1z2q_A LM5-1; membrane protein 33.0 47 0.0016 24.6 4.1 36 285-320 19-55 (84)
147 3mjh_B Early endosome antigen 31.6 5.8 0.0002 25.1 -1.1 17 286-302 4-20 (34)
148 1a7i_A QCRP2 (LIM1); LIM domai 31.2 14 0.00048 26.7 0.8 38 287-334 7-44 (81)
149 2zet_C Melanophilin; complex, 30.3 23 0.00078 29.8 2.1 47 285-332 66-116 (153)
150 1wfk_A Zinc finger, FYVE domai 29.9 45 0.0015 25.1 3.5 36 285-320 7-43 (88)
151 2cur_A Skeletal muscle LIM-pro 29.5 29 0.00098 24.1 2.2 26 288-316 6-31 (69)
152 1nyp_A Pinch protein; LIM doma 29.5 31 0.0011 23.6 2.4 37 287-334 5-41 (66)
153 3f6q_B LIM and senescent cell 29.0 37 0.0013 23.4 2.8 40 286-334 10-49 (72)
154 2jne_A Hypothetical protein YF 27.7 20 0.00067 28.1 1.1 41 287-335 32-72 (101)
155 2yw8_A RUN and FYVE domain-con 27.5 41 0.0014 24.9 2.8 36 285-320 17-53 (82)
156 2l4z_A DNA endonuclease RBBP8, 26.7 50 0.0017 26.2 3.5 38 287-334 61-98 (123)
157 2kwj_A Zinc finger protein DPF 26.5 6.4 0.00022 31.3 -2.0 46 288-333 59-108 (114)
158 3t7l_A Zinc finger FYVE domain 25.6 52 0.0018 24.8 3.2 36 286-321 19-55 (90)
159 1zfo_A LAsp-1; LIM domain, zin 25.0 22 0.00075 21.4 0.7 28 288-317 4-31 (31)
160 2l3k_A Rhombotin-2, linker, LI 24.8 30 0.001 27.2 1.8 37 285-322 34-70 (123)
161 2jmi_A Protein YNG1, ING1 homo 23.9 17 0.00057 27.9 0.0 39 288-332 26-75 (90)
162 1vfy_A Phosphatidylinositol-3- 23.3 53 0.0018 23.7 2.7 34 287-320 11-45 (73)
163 1x4i_A Inhibitor of growth pro 23.2 30 0.001 25.0 1.3 42 286-333 4-55 (70)
164 6rxn_A Rubredoxin; electron tr 22.9 17 0.00059 24.4 -0.1 8 326-333 32-39 (46)
165 1x6a_A LIMK-2, LIM domain kina 22.9 41 0.0014 24.1 2.0 33 287-319 41-73 (81)
166 1wig_A KIAA1808 protein; LIM d 22.8 58 0.002 23.0 2.8 33 286-319 30-62 (73)
167 3o7a_A PHD finger protein 13 v 22.5 15 0.0005 24.9 -0.5 45 288-332 4-51 (52)
168 3kv5_D JMJC domain-containing 22.1 22 0.00076 35.4 0.5 48 285-332 34-87 (488)
169 2jvx_A NF-kappa-B essential mo 22.1 19 0.00065 21.7 0.0 10 325-334 4-13 (28)
170 2o35_A Hypothetical protein DU 22.0 35 0.0012 26.8 1.5 13 311-323 42-54 (105)
171 3fyb_A Protein of unknown func 21.8 35 0.0012 26.7 1.5 12 311-322 41-52 (104)
172 2cuq_A Four and A half LIM dom 21.6 54 0.0018 23.3 2.5 36 288-334 16-51 (80)
173 1v6g_A Actin binding LIM prote 21.6 44 0.0015 23.9 2.0 36 288-334 16-51 (81)
174 2egq_A FHL1 protein; LIM domai 21.5 56 0.0019 23.0 2.6 39 288-335 16-57 (77)
175 2dlo_A Thyroid receptor-intera 21.2 42 0.0014 24.1 1.8 37 287-334 15-51 (81)
176 2cup_A Skeletal muscle LIM-pro 20.9 77 0.0026 23.5 3.3 47 285-335 31-77 (101)
177 1dvp_A HRS, hepatocyte growth 20.4 46 0.0016 29.1 2.2 35 286-320 160-195 (220)
178 3a1b_A DNA (cytosine-5)-methyl 20.1 85 0.0029 26.5 3.7 35 285-323 77-114 (159)
No 1
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.72 E-value=6.8e-18 Score=133.24 Aligned_cols=77 Identities=30% Similarity=0.660 Sum_probs=67.4
Q ss_pred CCCCCCCHHHHhcCCCceeeccccccccCCCCCCCCCCcccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCcccc
Q 019720 251 AADKGASDDQISRLPSWRYKRVDSNLEAGNSAPANEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILSCCPLC 330 (336)
Q Consensus 251 ~~~~g~s~~~i~~Lp~~k~~~~~~~~~~~~~~~~~~~~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~~~~tCPlC 330 (336)
...+|++++.++.||...+.... ....++.+|+||+++|.+++.++.+||+|.||..||++|++.+.+||+|
T Consensus 12 ~~~~~~s~~~i~~lp~~~~~~~~--------~~~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~C 83 (91)
T 2l0b_A 12 VANPPASKESIDALPEILVTEDH--------GAVGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVC 83 (91)
T ss_dssp SCCCCCCHHHHHTSCEEECCTTC--------SSSSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTT
T ss_pred cCCCCCCHHHHHhCCCeeecccc--------cccCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCCcCcCc
Confidence 45689999999999988876543 1235678999999999999999999999999999999999999999999
Q ss_pred CcCcC
Q 019720 331 KQELE 335 (336)
Q Consensus 331 R~~I~ 335 (336)
|+++.
T Consensus 84 r~~~~ 88 (91)
T 2l0b_A 84 RCMFP 88 (91)
T ss_dssp CCBSS
T ss_pred CccCC
Confidence 99875
No 2
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=9.9e-18 Score=127.18 Aligned_cols=68 Identities=34% Similarity=0.923 Sum_probs=59.2
Q ss_pred HHHhcCCCceeeccccccccCCCCCCCCCCcccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCccccCcCcC
Q 019720 259 DQISRLPSWRYKRVDSNLEAGNSAPANEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILSCCPLCKQELE 335 (336)
Q Consensus 259 ~~i~~Lp~~k~~~~~~~~~~~~~~~~~~~~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~ 335 (336)
+.+++||.++++... ...++.+|+||+++|++++.++.+||+|.||.+||++|++.+.+||+||+++.
T Consensus 4 ~~i~~lp~~~~~~~~---------~~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~ 71 (75)
T 1x4j_A 4 GSSGQLPSYRFNPNN---------HQSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSG 71 (75)
T ss_dssp CCCSSCCCEEBCSSS---------CSSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCC
T ss_pred hhHhhCCcEEecCcc---------ccCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCC
Confidence 446788988887543 23567799999999999999999999999999999999999999999999875
No 3
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.58 E-value=1.8e-15 Score=112.56 Aligned_cols=53 Identities=45% Similarity=1.074 Sum_probs=48.6
Q ss_pred CCCCCCcccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCccccCcCcC
Q 019720 283 PANEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILSCCPLCKQELE 335 (336)
Q Consensus 283 ~~~~~~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~ 335 (336)
...++.+|+||++.|.+++.++.+||+|.||..||.+|++.+.+||+||.++.
T Consensus 10 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~ 62 (69)
T 2kiz_A 10 EEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIE 62 (69)
T ss_dssp STTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSC
T ss_pred cCCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCcccc
Confidence 34567899999999999999999999999999999999999999999999875
No 4
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=1.7e-15 Score=114.21 Aligned_cols=53 Identities=36% Similarity=0.902 Sum_probs=48.8
Q ss_pred CCCCCCcccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCccccCcCcC
Q 019720 283 PANEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILSCCPLCKQELE 335 (336)
Q Consensus 283 ~~~~~~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~ 335 (336)
...++.+|+||+++|.+++.++.+||+|.||.+||++|++.+.+||+||+++.
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2ep4_A 11 ELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVL 63 (74)
T ss_dssp CCCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCS
T ss_pred cCCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCcccc
Confidence 34567899999999999999999999999999999999999999999999875
No 5
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.57 E-value=1.2e-15 Score=108.46 Aligned_cols=51 Identities=47% Similarity=1.050 Sum_probs=47.4
Q ss_pred CCCCcccccccccccCCceEEeC-CCCcccHHHHHHHHhcCCCccccCcCcC
Q 019720 285 NEDPECCICLAKYKEKEEVRKLP-CSHMFHLKCVDQWLRILSCCPLCKQELE 335 (336)
Q Consensus 285 ~~~~~C~ICL~~f~~~~~vr~LP-C~H~FH~~CI~~WL~~~~tCPlCR~~I~ 335 (336)
+++.+|+||++++++++....+| |+|.||.+||++|++.+.+||+||+++.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 46779999999999999999998 9999999999999999999999999874
No 6
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.55 E-value=2.8e-15 Score=114.18 Aligned_cols=54 Identities=37% Similarity=0.918 Sum_probs=49.3
Q ss_pred CCCCCCCcccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCccccCcCcC
Q 019720 282 APANEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILSCCPLCKQELE 335 (336)
Q Consensus 282 ~~~~~~~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~ 335 (336)
....++.+|+||++.|.+++.++.+||+|.||.+||.+|++.+.+||+||+++.
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~ 63 (78)
T 2ect_A 10 EHVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLT 63 (78)
T ss_dssp TTSSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCC
T ss_pred ccCCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccC
Confidence 344667899999999999999999999999999999999999999999999875
No 7
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=9.5e-15 Score=112.84 Aligned_cols=50 Identities=32% Similarity=0.751 Sum_probs=41.2
Q ss_pred CCCccccccccccc-----------CCceEEeC-CCCcccHHHHHHHHhcCCCccccCcCcC
Q 019720 286 EDPECCICLAKYKE-----------KEEVRKLP-CSHMFHLKCVDQWLRILSCCPLCKQELE 335 (336)
Q Consensus 286 ~~~~C~ICL~~f~~-----------~~~vr~LP-C~H~FH~~CI~~WL~~~~tCPlCR~~I~ 335 (336)
++.+|+||+++|++ ++.++.+| |+|.||.+||++||+.+.+||+||+++.
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~ 75 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWV 75 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCC
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcc
Confidence 45567777777754 55567776 9999999999999999999999999874
No 8
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.48 E-value=2.4e-14 Score=101.53 Aligned_cols=51 Identities=29% Similarity=0.670 Sum_probs=45.1
Q ss_pred CCCCcccccccccccC-CceEEeCCCCcccHHHHHHHHhcCCCccccCcCcC
Q 019720 285 NEDPECCICLAKYKEK-EEVRKLPCSHMFHLKCVDQWLRILSCCPLCKQELE 335 (336)
Q Consensus 285 ~~~~~C~ICL~~f~~~-~~vr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~ 335 (336)
.++.+|+||++++.++ +....+||+|.||.+||++|++.+.+||+||+++.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 3 SGSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp SCCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 4567899999999664 45788999999999999999999999999999875
No 9
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=3.4e-14 Score=104.98 Aligned_cols=54 Identities=24% Similarity=0.660 Sum_probs=46.9
Q ss_pred CCCCCCcccccccccccC----CceEEeCCCCcccHHHHHHHHhcCCCccccCcCcCC
Q 019720 283 PANEDPECCICLAKYKEK----EEVRKLPCSHMFHLKCVDQWLRILSCCPLCKQELER 336 (336)
Q Consensus 283 ~~~~~~~C~ICL~~f~~~----~~vr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~~ 336 (336)
...++.+|+||++.|.++ +.+..++|+|.||.+||++|++.+.+||+||.++.+
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 11 RPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp CTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 346678999999999875 345788999999999999999999999999999863
No 10
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.44 E-value=3.9e-14 Score=105.47 Aligned_cols=52 Identities=25% Similarity=0.687 Sum_probs=46.1
Q ss_pred CCCCCcccccccccccC----CceEEeCCCCcccHHHHHHHHhcCCCccccCcCcC
Q 019720 284 ANEDPECCICLAKYKEK----EEVRKLPCSHMFHLKCVDQWLRILSCCPLCKQELE 335 (336)
Q Consensus 284 ~~~~~~C~ICL~~f~~~----~~vr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~ 335 (336)
.+++.+|+||++.+.++ +....++|+|.||.+||++|++.+.+||+||+++.
T Consensus 7 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 62 (71)
T 3ng2_A 7 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 62 (71)
T ss_dssp CTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCC
T ss_pred CCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccC
Confidence 35678999999999874 55678999999999999999999999999999875
No 11
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.43 E-value=8.6e-14 Score=113.23 Aligned_cols=49 Identities=31% Similarity=0.699 Sum_probs=43.3
Q ss_pred CCCcccccccccccCC---------------ceEEeCCCCcccHHHHHHHHhcCCCccccCcCc
Q 019720 286 EDPECCICLAKYKEKE---------------EVRKLPCSHMFHLKCVDQWLRILSCCPLCKQEL 334 (336)
Q Consensus 286 ~~~~C~ICL~~f~~~~---------------~vr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I 334 (336)
++..|+||+++|+++. .++.++|+|.||..||++||+.+.+||+||+++
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~ 99 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREW 99 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCcc
Confidence 5678999999998652 367789999999999999999999999999975
No 12
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.42 E-value=8.6e-14 Score=113.33 Aligned_cols=50 Identities=32% Similarity=0.588 Sum_probs=42.1
Q ss_pred CCCcccccccccccCC---------------ceEEeCCCCcccHHHHHHHH-----hcCCCccccCcCcC
Q 019720 286 EDPECCICLAKYKEKE---------------EVRKLPCSHMFHLKCVDQWL-----RILSCCPLCKQELE 335 (336)
Q Consensus 286 ~~~~C~ICL~~f~~~~---------------~vr~LPC~H~FH~~CI~~WL-----~~~~tCPlCR~~I~ 335 (336)
.+.+|+|||++|.+++ .++.+||+|.||.+||++|+ +.+.+||+||..+.
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~ 93 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYG 93 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSS
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccC
Confidence 4568999999997764 44578999999999999999 45679999998764
No 13
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.42 E-value=7.9e-14 Score=101.48 Aligned_cols=50 Identities=26% Similarity=0.692 Sum_probs=44.6
Q ss_pred CCCcccccccccccC----CceEEeCCCCcccHHHHHHHHhcCCCccccCcCcC
Q 019720 286 EDPECCICLAKYKEK----EEVRKLPCSHMFHLKCVDQWLRILSCCPLCKQELE 335 (336)
Q Consensus 286 ~~~~C~ICL~~f~~~----~~vr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~ 335 (336)
++.+|+||++.+.++ +....++|+|.||.+||++|++.+.+||+||+++.
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 55 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 55 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCT
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCC
Confidence 567899999999874 45678899999999999999999999999999875
No 14
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=1.2e-13 Score=106.83 Aligned_cols=52 Identities=31% Similarity=0.818 Sum_probs=44.5
Q ss_pred CCCCCCcccccccccccCCceEEeCCC-----CcccHHHHHHHHhcC--CCccccCcCcC
Q 019720 283 PANEDPECCICLAKYKEKEEVRKLPCS-----HMFHLKCVDQWLRIL--SCCPLCKQELE 335 (336)
Q Consensus 283 ~~~~~~~C~ICL~~f~~~~~vr~LPC~-----H~FH~~CI~~WL~~~--~tCPlCR~~I~ 335 (336)
...++.+|.||+++|++++.+ ++||+ |.||.+||++||+.+ .+||+||.++.
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~l-~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~ 69 (80)
T 2d8s_A 11 TPSSQDICRICHCEGDDESPL-ITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFI 69 (80)
T ss_dssp CCTTSCCCSSSCCCCCSSSCE-ECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCC
T ss_pred CCCCCCCCeEcCccccCCCee-EeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeee
Confidence 345677999999999988876 69996 999999999999875 58999999763
No 15
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=1.4e-13 Score=103.08 Aligned_cols=50 Identities=38% Similarity=0.782 Sum_probs=44.6
Q ss_pred CCCCCCcccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCccccCcCcC
Q 019720 283 PANEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILSCCPLCKQELE 335 (336)
Q Consensus 283 ~~~~~~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~ 335 (336)
...++.+|+||++.+.++ ..+||+|.||.+||++|++.+.+||+||.++.
T Consensus 11 ~~~~~~~C~IC~~~~~~~---~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (71)
T 2d8t_A 11 PSLTVPECAICLQTCVHP---VSLPCKHVFCYLCVKGASWLGKRCALCRQEIP 60 (71)
T ss_dssp SSSSCCBCSSSSSBCSSE---EEETTTEEEEHHHHHHCTTCSSBCSSSCCBCC
T ss_pred cCCCCCCCccCCcccCCC---EEccCCCHHHHHHHHHHHHCCCcCcCcCchhC
Confidence 345678999999999876 77899999999999999999999999999875
No 16
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=4.6e-13 Score=100.55 Aligned_cols=50 Identities=20% Similarity=0.471 Sum_probs=44.1
Q ss_pred CCCCCCcccccccccccCCceEEe-CCCCcccHHHHHHHHhcCCCccccCcCcC
Q 019720 283 PANEDPECCICLAKYKEKEEVRKL-PCSHMFHLKCVDQWLRILSCCPLCKQELE 335 (336)
Q Consensus 283 ~~~~~~~C~ICL~~f~~~~~vr~L-PC~H~FH~~CI~~WL~~~~tCPlCR~~I~ 335 (336)
..+++..|+||++.+.++ ..+ +|+|.||..||++|++.+.+||+||+++.
T Consensus 11 ~~~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 61 (72)
T 2djb_A 11 ELTPYILCSICKGYLIDA---TTITECLHTFCKSCIVRHFYYSNRCPKCNIVVH 61 (72)
T ss_dssp CCCGGGSCTTTSSCCSSC---EECSSSCCEECHHHHHHHHHHCSSCTTTCCCCC
T ss_pred hcCCCCCCCCCChHHHCc---CEECCCCCHHHHHHHHHHHHcCCcCCCcCcccC
Confidence 346678999999999886 455 89999999999999999999999999875
No 17
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.36 E-value=3.4e-13 Score=99.71 Aligned_cols=49 Identities=37% Similarity=0.840 Sum_probs=43.5
Q ss_pred CCCCcccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCccccCcCcC
Q 019720 285 NEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILSCCPLCKQELE 335 (336)
Q Consensus 285 ~~~~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~ 335 (336)
+++.+|+||++.+.++ ...+||+|.||.+||++|++.+.+||+||.++.
T Consensus 3 ~~~~~C~IC~~~~~~~--~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~ 51 (68)
T 1chc_A 3 TVAERCPICLEDPSNY--SMALPCLHAFCYVCITRWIRQNPTCPLCKVPVE 51 (68)
T ss_dssp CCCCCCSSCCSCCCSC--EEETTTTEEESTTHHHHHHHHSCSTTTTCCCCC
T ss_pred CCCCCCeeCCccccCC--cEecCCCCeeHHHHHHHHHhCcCcCcCCChhhH
Confidence 4567899999998764 478899999999999999999999999999875
No 18
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=2.3e-13 Score=101.29 Aligned_cols=48 Identities=35% Similarity=1.007 Sum_probs=43.4
Q ss_pred CCCCCcccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCccccCcCcC
Q 019720 284 ANEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILSCCPLCKQELE 335 (336)
Q Consensus 284 ~~~~~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~ 335 (336)
..++.+|+||++.+.+ ..+||+|.||.+||++|++.+.+||+||+++.
T Consensus 12 ~~~~~~C~IC~~~~~~----~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 59 (70)
T 2ecn_A 12 LTDEEECCICMDGRAD----LILPCAHSFCQKCIDKWSDRHRNCPICRLQMT 59 (70)
T ss_dssp CCCCCCCSSSCCSCCS----EEETTTEEECHHHHHHSSCCCSSCHHHHHCTT
T ss_pred CCCCCCCeeCCcCccC----cccCCCCcccHHHHHHHHHCcCcCCCcCCccc
Confidence 3567899999999877 67999999999999999999999999999875
No 19
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=1.2e-12 Score=101.25 Aligned_cols=53 Identities=26% Similarity=0.622 Sum_probs=45.9
Q ss_pred CCCCCCcccccccccccCCc-eEEeCCCCcccHHHHHHHHhcC---CCccccCcCcC
Q 019720 283 PANEDPECCICLAKYKEKEE-VRKLPCSHMFHLKCVDQWLRIL---SCCPLCKQELE 335 (336)
Q Consensus 283 ~~~~~~~C~ICL~~f~~~~~-vr~LPC~H~FH~~CI~~WL~~~---~tCPlCR~~I~ 335 (336)
...++.+|+||++.|.+++. .+.+||+|.||.+||++|++.+ .+||+||+++.
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 67 (88)
T 2ct2_A 11 ALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITR 67 (88)
T ss_dssp CCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBC
T ss_pred hccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCccc
Confidence 44667899999999998664 6788999999999999999876 78999999764
No 20
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=9.8e-13 Score=100.86 Aligned_cols=50 Identities=22% Similarity=0.487 Sum_probs=44.2
Q ss_pred CCCCCCcccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCccccCcCcC
Q 019720 283 PANEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILSCCPLCKQELE 335 (336)
Q Consensus 283 ~~~~~~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~ 335 (336)
...++..|+||++.+.++ ..+||+|.||..||.+|++.+.+||+||.++.
T Consensus 11 ~~~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 11 EEEIPFRCFICRQAFQNP---VVTKCRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCCCCSBCSSSCSBCCSE---EECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred cCCCCCCCcCCCchhcCe---eEccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 345677999999999886 57899999999999999999999999999864
No 21
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.31 E-value=1.7e-12 Score=98.11 Aligned_cols=50 Identities=24% Similarity=0.567 Sum_probs=43.7
Q ss_pred CCCCCCCcccccccccccCCceEEeC-CCCcccHHHHHHHHhcC--CCccccCcCc
Q 019720 282 APANEDPECCICLAKYKEKEEVRKLP-CSHMFHLKCVDQWLRIL--SCCPLCKQEL 334 (336)
Q Consensus 282 ~~~~~~~~C~ICL~~f~~~~~vr~LP-C~H~FH~~CI~~WL~~~--~tCPlCR~~I 334 (336)
....++..|+||++.+.++ ..+| |+|.||..||++|++.+ .+||+||+++
T Consensus 10 ~~~~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~ 62 (74)
T 2yur_A 10 DPIPDELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQND 62 (74)
T ss_dssp CCSCGGGSCSSSCCCCTTC---EECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSS
T ss_pred ccCCCCCCCcCCChHHhCC---eEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcC
Confidence 3446778999999999987 6799 99999999999999876 6899999975
No 22
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=1.5e-12 Score=95.90 Aligned_cols=49 Identities=18% Similarity=0.473 Sum_probs=42.6
Q ss_pred CCCCCcccccccccccCCceEEeCCCCcccHHHHHHHH-hcCCCccccCcCcC
Q 019720 284 ANEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWL-RILSCCPLCKQELE 335 (336)
Q Consensus 284 ~~~~~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL-~~~~tCPlCR~~I~ 335 (336)
..++..|+||++.+.++ ..++|+|.||.+||++|+ +.+.+||+||+++.
T Consensus 12 ~~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 61 (66)
T 2ecy_A 12 VEDKYKCEKCHLVLCSP---KQTECGHRFCESCMAALLSSSSPKCTACQESIV 61 (66)
T ss_dssp CCCCEECTTTCCEESSC---CCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCC
T ss_pred CCcCCCCCCCChHhcCe---eECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCC
Confidence 35678999999999887 447999999999999999 45689999999875
No 23
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=1.9e-12 Score=96.90 Aligned_cols=49 Identities=35% Similarity=0.689 Sum_probs=42.8
Q ss_pred CCCCCcccccccccccCCceEEeCCCCcccHHHHHHHHh---cCCCccccCcCcC
Q 019720 284 ANEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLR---ILSCCPLCKQELE 335 (336)
Q Consensus 284 ~~~~~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~---~~~tCPlCR~~I~ 335 (336)
..++.+|+||++.+.++ ..+||+|.||.+||.+|++ .+.+||+||+++.
T Consensus 17 ~~~~~~C~IC~~~~~~~---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 68 (73)
T 2ysl_A 17 LQEEVICPICLDILQKP---VTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVR 68 (73)
T ss_dssp CCCCCBCTTTCSBCSSE---EECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCC
T ss_pred CccCCEeccCCcccCCe---EEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCC
Confidence 45678999999999876 6779999999999999997 4568999999875
No 24
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.29 E-value=2.7e-13 Score=112.19 Aligned_cols=49 Identities=33% Similarity=0.744 Sum_probs=1.0
Q ss_pred CCCcccccccccccC-------------C--ceEEeCCCCcccHHHHHHHHhcCCCccccCcCc
Q 019720 286 EDPECCICLAKYKEK-------------E--EVRKLPCSHMFHLKCVDQWLRILSCCPLCKQEL 334 (336)
Q Consensus 286 ~~~~C~ICL~~f~~~-------------~--~vr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I 334 (336)
+++.|+||+++|+++ + .+..++|+|.||..||++||+.+.+||+||+++
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~ 110 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREW 110 (117)
T ss_dssp CC--------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCee
Confidence 457899999999863 2 233458999999999999999999999999974
No 25
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.25 E-value=1.7e-12 Score=109.68 Aligned_cols=47 Identities=28% Similarity=0.879 Sum_probs=42.8
Q ss_pred CCCcccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCccccCcCcC
Q 019720 286 EDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILSCCPLCKQELE 335 (336)
Q Consensus 286 ~~~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~ 335 (336)
++..|+||++.|.++ ..+||||.||..||.+|++.+.+||+||+++.
T Consensus 52 ~~~~C~iC~~~~~~~---~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 98 (138)
T 4ayc_A 52 NELQCIICSEYFIEA---VTLNCAHSFCSYCINEWMKRKIECPICRKDIK 98 (138)
T ss_dssp HHSBCTTTCSBCSSE---EEETTSCEEEHHHHHHHTTTCSBCTTTCCBCC
T ss_pred ccCCCcccCcccCCc---eECCCCCCccHHHHHHHHHcCCcCCCCCCcCC
Confidence 456899999999887 77899999999999999999999999999874
No 26
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.24 E-value=8.1e-12 Score=95.51 Aligned_cols=49 Identities=29% Similarity=0.611 Sum_probs=43.5
Q ss_pred CCCCCcccccccccccCCceEEeCCCCcccHHHHHHHHhc------CCCccccCcCcC
Q 019720 284 ANEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRI------LSCCPLCKQELE 335 (336)
Q Consensus 284 ~~~~~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~~------~~tCPlCR~~I~ 335 (336)
..++.+|+||++.+.++ ..+||+|.||..||.+|++. +..||+||.++.
T Consensus 16 ~~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~ 70 (85)
T 2ecw_A 16 IKEEVTCPICLELLKEP---VSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYP 70 (85)
T ss_dssp CCTTTSCTTTCSCCSSC---EECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCC
T ss_pred CccCCCCcCCChhhCcc---eeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCC
Confidence 45678999999999887 57899999999999999987 678999999875
No 27
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.23 E-value=3.9e-12 Score=105.01 Aligned_cols=51 Identities=25% Similarity=0.699 Sum_probs=45.8
Q ss_pred CCCCcccccccccccC----CceEEeCCCCcccHHHHHHHHhcCCCccccCcCcC
Q 019720 285 NEDPECCICLAKYKEK----EEVRKLPCSHMFHLKCVDQWLRILSCCPLCKQELE 335 (336)
Q Consensus 285 ~~~~~C~ICL~~f~~~----~~vr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~ 335 (336)
.++.+|+||++.|.++ +....++|||.||.+||++|++.+.+||+||+.+.
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 59 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 59 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCT
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCc
Confidence 5678999999999875 55688999999999999999999999999999875
No 28
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.22 E-value=7e-12 Score=95.16 Aligned_cols=49 Identities=20% Similarity=0.392 Sum_probs=44.0
Q ss_pred CCCCCcccccccccccCCceEEeCCCCcccHHHHHHHHhc-CCCccccCcCcC
Q 019720 284 ANEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRI-LSCCPLCKQELE 335 (336)
Q Consensus 284 ~~~~~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~~-~~tCPlCR~~I~ 335 (336)
..++..|+||++.+.++ ..+||||.||..||.+|++. +.+||+||.++.
T Consensus 5 ~~~~~~C~IC~~~~~~P---v~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~ 54 (78)
T 1t1h_A 5 FPEYFRCPISLELMKDP---VIVSTGQTYERSSIQKWLDAGHKTCPKSQETLL 54 (78)
T ss_dssp CSSSSSCTTTSCCCSSE---EEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCS
T ss_pred CcccCCCCCccccccCC---EEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCC
Confidence 45788999999999887 67899999999999999987 789999999874
No 29
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.22 E-value=1.2e-11 Score=90.22 Aligned_cols=44 Identities=36% Similarity=0.725 Sum_probs=39.0
Q ss_pred CCCCCcccccccccccCCceEEeCCCCcccHHHHHHHHh---cCCCcccc
Q 019720 284 ANEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLR---ILSCCPLC 330 (336)
Q Consensus 284 ~~~~~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~---~~~tCPlC 330 (336)
.+++.+|+||++.+.++ ..+||+|.||.+||++|++ .+.+||+|
T Consensus 17 ~~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 17 LQEEVICPICLDILQKP---VTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCBCTTTCSBCSSC---EECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred CccCCCCCcCCchhCCe---EEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 45678999999999987 6789999999999999998 45689998
No 30
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.22 E-value=9.1e-12 Score=95.22 Aligned_cols=49 Identities=29% Similarity=0.657 Sum_probs=43.3
Q ss_pred CCCCCcccccccccccCCceEEeCCCCcccHHHHHHHHhc------CCCccccCcCcC
Q 019720 284 ANEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRI------LSCCPLCKQELE 335 (336)
Q Consensus 284 ~~~~~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~~------~~tCPlCR~~I~ 335 (336)
..++.+|+||++.+.++ ..+||+|.||.+||.+|++. +..||+||..+.
T Consensus 16 ~~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~ 70 (85)
T 2ecv_A 16 VKEEVTCPICLELLTQP---LSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQ 70 (85)
T ss_dssp CCCCCCCTTTCSCCSSC---BCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSC
T ss_pred ccCCCCCCCCCcccCCc---eeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccC
Confidence 45678999999999887 56799999999999999987 789999999875
No 31
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.22 E-value=2.2e-12 Score=97.83 Aligned_cols=49 Identities=29% Similarity=0.590 Sum_probs=43.0
Q ss_pred CCCCCcccccccccccCCceEEeCCCCcccHHHHHHHHhc-------CCCccccCcCcC
Q 019720 284 ANEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRI-------LSCCPLCKQELE 335 (336)
Q Consensus 284 ~~~~~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~~-------~~tCPlCR~~I~ 335 (336)
..++.+|+||++.+.++ ..+||+|.||.+||.+|++. +.+||+||.++.
T Consensus 9 ~~~~~~C~IC~~~~~~p---~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~ 64 (79)
T 2egp_A 9 VQEEVTCPICLELLTEP---LSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYS 64 (79)
T ss_dssp CCCCCEETTTTEECSSC---CCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCC
T ss_pred cccCCCCcCCCcccCCe---eECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCC
Confidence 45678999999999887 55899999999999999987 678999999874
No 32
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.19 E-value=1.1e-11 Score=88.51 Aligned_cols=44 Identities=30% Similarity=0.775 Sum_probs=38.1
Q ss_pred CCCCCcccccccccccCCceEEeCCCCcccHHHHHHHH---hcCCCcccc
Q 019720 284 ANEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWL---RILSCCPLC 330 (336)
Q Consensus 284 ~~~~~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL---~~~~tCPlC 330 (336)
..++..|+||++.+.++ ..++|+|.||.+||++|+ +.+.+||+|
T Consensus 12 ~~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 12 LQVEASCSVCLEYLKEP---VIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp SCCCCBCSSSCCBCSSC---CCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred cccCCCCccCCcccCcc---EeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 45678999999999987 568999999999999995 456889998
No 33
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.18 E-value=6.4e-12 Score=100.47 Aligned_cols=48 Identities=31% Similarity=0.799 Sum_probs=42.4
Q ss_pred CCCCcccccccccccCCceEE-eCCCCcccHHHHHHHHhcC-CCccccCcCcC
Q 019720 285 NEDPECCICLAKYKEKEEVRK-LPCSHMFHLKCVDQWLRIL-SCCPLCKQELE 335 (336)
Q Consensus 285 ~~~~~C~ICL~~f~~~~~vr~-LPC~H~FH~~CI~~WL~~~-~tCPlCR~~I~ 335 (336)
.++..|+||++.+.++ .. ++|+|.||..||.+|++.+ .+||+||.++.
T Consensus 20 ~~~~~C~IC~~~~~~p---~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 69 (100)
T 3lrq_A 20 AEVFRCFICMEKLRDA---RLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQ 69 (100)
T ss_dssp HHHTBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCCCccCCccccCc---cccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCC
Confidence 3567899999999876 56 8999999999999999987 79999999874
No 34
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.17 E-value=1.8e-11 Score=93.20 Aligned_cols=52 Identities=21% Similarity=0.511 Sum_probs=43.9
Q ss_pred CCCCCCCcccccccccccCCceEEeCCCCcccHHHHHHHHhcC--CCccccCcCcC
Q 019720 282 APANEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRIL--SCCPLCKQELE 335 (336)
Q Consensus 282 ~~~~~~~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~~~--~tCPlCR~~I~ 335 (336)
...+...+|+||.+.+..++... .|+|.||..||++||+.+ .+||+||.+.+
T Consensus 10 ~y~~~i~~C~IC~~~i~~g~~C~--~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~ 63 (74)
T 2ct0_A 10 TYPDAVKICNICHSLLIQGQSCE--TCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 63 (74)
T ss_dssp CCSSSSCBCSSSCCBCSSSEECS--SSCCEECHHHHHHHSTTCSSCCCTTTCSCCC
T ss_pred hccCCCCcCcchhhHcccCCccC--CCCchhhHHHHHHHHHhcCCCCCCCCcCcCC
Confidence 34456689999999999875443 799999999999999987 89999998763
No 35
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.16 E-value=1e-11 Score=98.66 Aligned_cols=47 Identities=23% Similarity=0.614 Sum_probs=42.0
Q ss_pred CCCcccccccccccCCceEEe-CCCCcccHHHHHHHHhcCCCccccCcCcC
Q 019720 286 EDPECCICLAKYKEKEEVRKL-PCSHMFHLKCVDQWLRILSCCPLCKQELE 335 (336)
Q Consensus 286 ~~~~C~ICL~~f~~~~~vr~L-PC~H~FH~~CI~~WL~~~~tCPlCR~~I~ 335 (336)
++..|+||++.|.++ ..+ +|||.||..||.+|++.+.+||+||.++.
T Consensus 21 ~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 68 (99)
T 2y43_A 21 DLLRCGICFEYFNIA---MIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVT 68 (99)
T ss_dssp HHTBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCC
T ss_pred CCCCcccCChhhCCc---CEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCC
Confidence 467899999999886 555 89999999999999999999999999874
No 36
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.16 E-value=1.8e-11 Score=89.80 Aligned_cols=50 Identities=28% Similarity=0.548 Sum_probs=41.3
Q ss_pred CCCccccccc-ccccCCce-EEeCCCCcccHHHHHHHHhc-CCCccccCcCcC
Q 019720 286 EDPECCICLA-KYKEKEEV-RKLPCSHMFHLKCVDQWLRI-LSCCPLCKQELE 335 (336)
Q Consensus 286 ~~~~C~ICL~-~f~~~~~v-r~LPC~H~FH~~CI~~WL~~-~~tCPlCR~~I~ 335 (336)
++..|+||++ .+.++... ..++|||.||.+||++|+.. +.+||+||+++.
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 54 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLR 54 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCS
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccc
Confidence 4678999999 77777543 45789999999999999765 478999999875
No 37
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.16 E-value=2.6e-11 Score=94.83 Aligned_cols=50 Identities=24% Similarity=0.567 Sum_probs=43.6
Q ss_pred CCCCCCCcccccccccccCCceEEeC-CCCcccHHHHHHHHhcC--CCccccCcCc
Q 019720 282 APANEDPECCICLAKYKEKEEVRKLP-CSHMFHLKCVDQWLRIL--SCCPLCKQEL 334 (336)
Q Consensus 282 ~~~~~~~~C~ICL~~f~~~~~vr~LP-C~H~FH~~CI~~WL~~~--~tCPlCR~~I 334 (336)
....++..|+||++.+.++ ..+| |+|.||..||.+|++.+ .+||+||.++
T Consensus 8 ~~~~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~ 60 (92)
T 3ztg_A 8 DPIPDELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQND 60 (92)
T ss_dssp CCCCTTTEETTTTEECSSC---EECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSS
T ss_pred ccCCcCCCCCCCChhhcCc---eECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcC
Confidence 3446788999999999988 7899 99999999999999754 5899999986
No 38
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.14 E-value=1.9e-11 Score=98.73 Aligned_cols=48 Identities=23% Similarity=0.690 Sum_probs=42.7
Q ss_pred CCCCcccccccccccCCceEEe-CCCCcccHHHHHHHHhcCCCccccCcCcC
Q 019720 285 NEDPECCICLAKYKEKEEVRKL-PCSHMFHLKCVDQWLRILSCCPLCKQELE 335 (336)
Q Consensus 285 ~~~~~C~ICL~~f~~~~~vr~L-PC~H~FH~~CI~~WL~~~~tCPlCR~~I~ 335 (336)
.++..|+||++.+.++ ..+ +|||.||..||.+|++.+.+||+||..+.
T Consensus 13 ~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 61 (108)
T 2ckl_A 13 NPHLMCVLCGGYFIDA---TTIIECLHSFCKTCIVRYLETSKYCPICDVQVH 61 (108)
T ss_dssp GGGTBCTTTSSBCSSE---EEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSC
T ss_pred CCcCCCccCChHHhCc---CEeCCCCChhhHHHHHHHHHhCCcCcCCCcccc
Confidence 4577999999999876 555 99999999999999999999999999874
No 39
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.13 E-value=2.3e-11 Score=100.32 Aligned_cols=51 Identities=25% Similarity=0.699 Sum_probs=45.1
Q ss_pred CCCCcccccccccccC----CceEEeCCCCcccHHHHHHHHhcCCCccccCcCcC
Q 019720 285 NEDPECCICLAKYKEK----EEVRKLPCSHMFHLKCVDQWLRILSCCPLCKQELE 335 (336)
Q Consensus 285 ~~~~~C~ICL~~f~~~----~~vr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~ 335 (336)
+++.+|+||++.++++ .....++|+|.||..||++|++.+.+||+||.++.
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 124 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 124 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCC
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCC
Confidence 5678899999999874 34578899999999999999999999999999885
No 40
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.11 E-value=2.4e-11 Score=100.50 Aligned_cols=48 Identities=25% Similarity=0.531 Sum_probs=41.9
Q ss_pred CCCCcccccccccccCCceEEeCCCCcccHHHHHHHHhcC-CCccccCcCcC
Q 019720 285 NEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRIL-SCCPLCKQELE 335 (336)
Q Consensus 285 ~~~~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~~~-~tCPlCR~~I~ 335 (336)
.++..|+||++.+.++ ..+||||.||..||.+|++.+ .+||+||.++.
T Consensus 50 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 98 (124)
T 3fl2_A 50 EETFQCICCQELVFRP---ITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLG 98 (124)
T ss_dssp HHHTBCTTTSSBCSSE---EECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCC
T ss_pred ccCCCCCcCChHHcCc---EEeeCCCcccHHHHHHHHhHCcCCCCCCCccCC
Confidence 3467899999999987 678999999999999999865 49999999874
No 41
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.10 E-value=5.1e-11 Score=103.21 Aligned_cols=78 Identities=23% Similarity=0.350 Sum_probs=51.9
Q ss_pred CCCCCHHHHhcCCCceeeccccccccCCCCCCCCCCcccccccccccCCceEEeCCCCcccHHHHHHHHhc-CCCccccC
Q 019720 253 DKGASDDQISRLPSWRYKRVDSNLEAGNSAPANEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRI-LSCCPLCK 331 (336)
Q Consensus 253 ~~g~s~~~i~~Lp~~k~~~~~~~~~~~~~~~~~~~~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~~-~~tCPlCR 331 (336)
..+.+...+.+.+........+ .........++..|+||++.+.++ +..+||+|.||..||++|++. +.+||+||
T Consensus 22 ~~~l~~~~~~r~~~~~~~~~~~--~~~~~~~~~~~~~C~IC~~~~~~p--~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr 97 (165)
T 2ckl_B 22 TWELSLYELQRTPQEAITDGLE--IVVSPRSLHSELMCPICLDMLKNT--MTTKECLHRFCADCIITALRSGNKECPTCR 97 (165)
T ss_dssp CCCCCHHHHHCCCCCCCCSCCE--EC----CCHHHHBCTTTSSBCSSE--EEETTTCCEEEHHHHHHHHHTTCCBCTTTC
T ss_pred cccCCHHHHhcCchhhhccccc--cccchhhCCCCCCCcccChHhhCc--CEeCCCCChhHHHHHHHHHHhCcCCCCCCC
Confidence 3455666666655432222111 111122234567999999999875 333499999999999999987 78999999
Q ss_pred cCc
Q 019720 332 QEL 334 (336)
Q Consensus 332 ~~I 334 (336)
.++
T Consensus 98 ~~~ 100 (165)
T 2ckl_B 98 KKL 100 (165)
T ss_dssp CBC
T ss_pred CcC
Confidence 987
No 42
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.06 E-value=4.5e-11 Score=96.47 Aligned_cols=47 Identities=36% Similarity=0.701 Sum_probs=40.9
Q ss_pred CCCcccccccccccCCceEEeCCCCcccHHHHHHHHhcCC---CccccCcCcC
Q 019720 286 EDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILS---CCPLCKQELE 335 (336)
Q Consensus 286 ~~~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~~~~---tCPlCR~~I~ 335 (336)
++.+|+||++.+.++ ..+||+|.||..||.+|++.+. +||+||.++.
T Consensus 20 ~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 69 (112)
T 1jm7_A 20 KILECPICLELIKEP---VSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDIT 69 (112)
T ss_dssp HHTSCSSSCCCCSSC---CBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCC
T ss_pred CCCCCcccChhhcCe---EECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCC
Confidence 456899999999887 4579999999999999998754 8999999874
No 43
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.03 E-value=2.9e-11 Score=98.59 Aligned_cols=48 Identities=27% Similarity=0.748 Sum_probs=42.5
Q ss_pred CCCCCcccccccccccCCceEEeCCCCcccHHHHHHHHhc-CCCccccCcCc
Q 019720 284 ANEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRI-LSCCPLCKQEL 334 (336)
Q Consensus 284 ~~~~~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~~-~~tCPlCR~~I 334 (336)
..++..|+||++.+.++ ..+||+|.||..||.+|++. +.+||+||..+
T Consensus 12 ~~~~~~C~iC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~ 60 (115)
T 3l11_A 12 SLSECQCGICMEILVEP---VTLPCNHTLCKPCFQSTVEKASLCCPFCRRRV 60 (115)
T ss_dssp CHHHHBCTTTCSBCSSC---EECTTSCEECHHHHCCCCCTTTSBCTTTCCBC
T ss_pred CCCCCCCccCCcccCce---eEcCCCCHHhHHHHHHHHhHCcCCCCCCCccc
Confidence 35678999999999987 67899999999999999976 67899999976
No 44
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.02 E-value=1e-10 Score=95.97 Aligned_cols=49 Identities=31% Similarity=0.590 Sum_probs=43.1
Q ss_pred CCCCCcccccccccccCCceEEeCCCCcccHHHHHHHHhcCC-CccccCcCcC
Q 019720 284 ANEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILS-CCPLCKQELE 335 (336)
Q Consensus 284 ~~~~~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~~~~-tCPlCR~~I~ 335 (336)
..++..|+||++.+.++ ..++|+|.||..||.+|++.+. +||+||.++.
T Consensus 15 ~~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 64 (118)
T 3hct_A 15 LESKYECPICLMALREA---VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILL 64 (118)
T ss_dssp CCGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCC
T ss_pred CCCCCCCCcCChhhcCe---EECCcCChhhHHHHHHHHhhCCCCCCCCCCCcC
Confidence 35678999999999887 6689999999999999998765 9999999874
No 45
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.00 E-value=1.1e-10 Score=85.98 Aligned_cols=48 Identities=23% Similarity=0.546 Sum_probs=41.7
Q ss_pred CCCCcccccccccccCCceEEe--CCCCc-ccHHHHHHHHhcCCCccccCcCcC
Q 019720 285 NEDPECCICLAKYKEKEEVRKL--PCSHM-FHLKCVDQWLRILSCCPLCKQELE 335 (336)
Q Consensus 285 ~~~~~C~ICL~~f~~~~~vr~L--PC~H~-FH~~CI~~WL~~~~tCPlCR~~I~ 335 (336)
+++.+|.||++...+. ..+ ||||. |+.+|+++|.+.+..||+||++++
T Consensus 6 ~~~~~C~IC~~~~~~~---~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 56 (64)
T 2vje_A 6 NAIEPCVICQGRPKNG---CIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQ 56 (64)
T ss_dssp GGGSCCTTTSSSCSCE---EEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred CCcCCCCcCCCCCCCE---EEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence 4677899999987665 445 99999 899999999999999999999885
No 46
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.99 E-value=1.4e-10 Score=99.56 Aligned_cols=47 Identities=19% Similarity=0.508 Sum_probs=41.6
Q ss_pred CCCcccccccccccCCceEEeCCCCcccHHHHHHHHhcCC-CccccCcCcC
Q 019720 286 EDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILS-CCPLCKQELE 335 (336)
Q Consensus 286 ~~~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~~~~-tCPlCR~~I~ 335 (336)
++..|+||++.+.++ ..+||+|.||..||.+|++.+. +||+||.++.
T Consensus 77 ~~~~C~IC~~~~~~p---v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 124 (150)
T 1z6u_A 77 QSFMCVCCQELVYQP---VTTECFHNVCKDCLQRSFKAQVFSCPACRHDLG 124 (150)
T ss_dssp HHTBCTTTSSBCSSE---EECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCC
T ss_pred cCCEeecCChhhcCC---EEcCCCCchhHHHHHHHHHhCCCcCCCCCccCC
Confidence 457899999999887 6689999999999999998764 8999999875
No 47
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.99 E-value=3.7e-10 Score=87.82 Aligned_cols=49 Identities=14% Similarity=0.118 Sum_probs=45.1
Q ss_pred CCCCCcccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCccccCcCcC
Q 019720 284 ANEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILSCCPLCKQELE 335 (336)
Q Consensus 284 ~~~~~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~ 335 (336)
..++..|+||++-+.++ ..+||||.|++.||.+|+..+.+||+||.++.
T Consensus 11 ~p~~~~CpI~~~~m~dP---V~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~ 59 (85)
T 2kr4_A 11 APDEFRDPLMDTLMTDP---VRLPSGTVMDRSIILRHLLNSPTDPFNRQMLT 59 (85)
T ss_dssp CCTTTBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHCSBCTTTCCBCC
T ss_pred CchheECcccCchhcCC---eECCCCCEECHHHHHHHHhcCCCCCCCcCCCC
Confidence 45788999999999999 78999999999999999999999999999874
No 48
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.99 E-value=1.3e-10 Score=94.81 Aligned_cols=47 Identities=26% Similarity=0.581 Sum_probs=41.9
Q ss_pred CCCcccccccccccCCceEEeCCCCcccHHHHHHHHhc-CCCccccCcCcC
Q 019720 286 EDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRI-LSCCPLCKQELE 335 (336)
Q Consensus 286 ~~~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~~-~~tCPlCR~~I~ 335 (336)
++..|+||++.+.++ ..++|||.||..||.+|++. +.+||+||.++.
T Consensus 22 ~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 69 (116)
T 1rmd_A 22 KSISCQICEHILADP---VETSCKHLFCRICILRCLKVMGSYCPSCRYPCF 69 (116)
T ss_dssp HHTBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCCCCCCcHhcCc---EEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCC
Confidence 467899999999887 56899999999999999987 789999999874
No 49
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.97 E-value=3.2e-10 Score=87.00 Aligned_cols=51 Identities=18% Similarity=0.452 Sum_probs=40.9
Q ss_pred CCCCCcccccccccccCCceEEeC--CCCcccHHHHHHHHhc-CCCccccCcCcC
Q 019720 284 ANEDPECCICLAKYKEKEEVRKLP--CSHMFHLKCVDQWLRI-LSCCPLCKQELE 335 (336)
Q Consensus 284 ~~~~~~C~ICL~~f~~~~~vr~LP--C~H~FH~~CI~~WL~~-~~tCPlCR~~I~ 335 (336)
.+++.+|+||++.+..++. ..+| |||.||..|+.++++. +..||.||+++.
T Consensus 8 ~~~~~~CpICle~~~~~d~-~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~ 61 (78)
T 1e4u_A 8 KEDPVECPLCMEPLEIDDI-NFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYP 61 (78)
T ss_dssp CCCCCBCTTTCCBCCTTTT-TCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCS
T ss_pred cccCCcCCccCccCccccc-cccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccC
Confidence 4677899999999865432 3444 9999999999999853 678999999875
No 50
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.94 E-value=8.3e-10 Score=88.26 Aligned_cols=49 Identities=16% Similarity=0.052 Sum_probs=45.0
Q ss_pred CCCCCcccccccccccCCceEEeCCC-CcccHHHHHHHHhcCCCccccCcCcC
Q 019720 284 ANEDPECCICLAKYKEKEEVRKLPCS-HMFHLKCVDQWLRILSCCPLCKQELE 335 (336)
Q Consensus 284 ~~~~~~C~ICL~~f~~~~~vr~LPC~-H~FH~~CI~~WL~~~~tCPlCR~~I~ 335 (336)
..++..|+||++-+.++ ..+||| |.|++.||.+|+..+.+||+||.++.
T Consensus 19 ~p~~~~CpI~~~~m~dP---V~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~ 68 (98)
T 1wgm_A 19 ACDEFLDPIMSTLMCDP---VVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLT 68 (98)
T ss_dssp CCTTTBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCC
T ss_pred CcHhcCCcCccccccCC---eECCCCCeEECHHHHHHHHHhCCCCCCCCCCCC
Confidence 35788999999999999 789999 99999999999998999999999874
No 51
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.94 E-value=1.6e-10 Score=82.78 Aligned_cols=45 Identities=27% Similarity=0.535 Sum_probs=39.5
Q ss_pred CCCCcccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCccccCcCcC
Q 019720 285 NEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILSCCPLCKQELE 335 (336)
Q Consensus 285 ~~~~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~ 335 (336)
.++..|+||++.|.++ +.|||+|.||..||.+| +..||+||+.+.
T Consensus 4 ~~~~~C~IC~~~~~~p---~~l~CgH~fC~~Ci~~~---~~~CP~Cr~~~~ 48 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCP---KLLPCLHTLCSGCLEAS---GMQCPICQAPWP 48 (56)
T ss_dssp CCCSSCSSSCSSCBCC---SCSTTSCCSBTTTCSSS---SSSCSSCCSSSS
T ss_pred ccCCCceEeCCccCCe---EEcCCCCcccHHHHccC---CCCCCcCCcEee
Confidence 5677899999999987 67899999999999883 678999999874
No 52
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.93 E-value=6.2e-10 Score=89.29 Aligned_cols=49 Identities=14% Similarity=0.137 Sum_probs=45.2
Q ss_pred CCCCCcccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCccccCcCcC
Q 019720 284 ANEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILSCCPLCKQELE 335 (336)
Q Consensus 284 ~~~~~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~ 335 (336)
..++..|+||++-+.++ ..+||||.|++.||.+|+..+.+||+||.++.
T Consensus 26 ~p~~~~CpI~~~~m~dP---V~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~ 74 (100)
T 2kre_A 26 APDEFRDPLMDTLMTDP---VRLPSGTIMDRSIILRHLLNSPTDPFNRQTLT 74 (100)
T ss_dssp CSTTTBCTTTCSBCSSE---EEETTTEEEEHHHHHHHTTSCSBCSSSCCBCC
T ss_pred CcHhhCCcCccCcccCC---eECCCCCEEchHHHHHHHHcCCCCCCCCCCCC
Confidence 46788999999999999 78999999999999999998999999999874
No 53
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.92 E-value=3.3e-10 Score=83.22 Aligned_cols=48 Identities=21% Similarity=0.593 Sum_probs=41.3
Q ss_pred CCCCcccccccccccCCceEEe--CCCCc-ccHHHHHHHHhcCCCccccCcCcC
Q 019720 285 NEDPECCICLAKYKEKEEVRKL--PCSHM-FHLKCVDQWLRILSCCPLCKQELE 335 (336)
Q Consensus 285 ~~~~~C~ICL~~f~~~~~vr~L--PC~H~-FH~~CI~~WL~~~~tCPlCR~~I~ 335 (336)
+.+.+|.||++...+. ..+ ||||. |+.+|+.+|.+.+..||+||++++
T Consensus 5 ~~~~~C~IC~~~~~~~---~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 55 (63)
T 2vje_B 5 NLLKPCSLCEKRPRDG---NIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQ 55 (63)
T ss_dssp GGGSBCTTTSSSBSCE---EEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred CcCCCCcccCCcCCCe---EEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence 4567899999986664 445 99998 999999999988899999999885
No 54
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.89 E-value=9.3e-10 Score=107.76 Aligned_cols=46 Identities=28% Similarity=0.732 Sum_probs=41.4
Q ss_pred CCcccccccccccCCceEEeCCCCcccHHHHHHHHh-cCCCccccCcCcC
Q 019720 287 DPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLR-ILSCCPLCKQELE 335 (336)
Q Consensus 287 ~~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~-~~~tCPlCR~~I~ 335 (336)
..+|+||++.+.++ ..+||||.||..|+.+|++ .+.+||+||.++.
T Consensus 332 ~~~C~ICle~~~~p---v~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~ 378 (389)
T 2y1n_A 332 FQLCKICAENDKDV---KIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIK 378 (389)
T ss_dssp SSBCTTTSSSBCCE---EEETTCCEECHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCCccCcCCCCe---EEeCCCChhhHHHHHHHHhcCCCCCCCCCCccC
Confidence 46999999998775 7899999999999999998 6889999999874
No 55
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.85 E-value=6e-10 Score=94.71 Aligned_cols=48 Identities=19% Similarity=0.380 Sum_probs=42.2
Q ss_pred CCCCCcccccccccccCCceEEeCCCCcccHHHHHHHHhcC-CCccccCcCc
Q 019720 284 ANEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRIL-SCCPLCKQEL 334 (336)
Q Consensus 284 ~~~~~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~~~-~tCPlCR~~I 334 (336)
.+++..|+||++.+.++ ..++|||.||..||.+|++.+ .+||+||.++
T Consensus 28 l~~~~~C~IC~~~~~~p---v~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~ 76 (141)
T 3knv_A 28 LEAKYLCSACRNVLRRP---FQAQCGHRYCSFCLASILSSGPQNCAACVHEG 76 (141)
T ss_dssp CCGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHGGGSCEECHHHHHTT
T ss_pred CCcCcCCCCCChhhcCc---EECCCCCccCHHHHHHHHhcCCCCCCCCCCcc
Confidence 35678999999999988 668999999999999999866 4899999864
No 56
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.84 E-value=1.7e-09 Score=78.88 Aligned_cols=48 Identities=27% Similarity=0.666 Sum_probs=38.5
Q ss_pred CCCCcccccccccccCCceEEeCCC--C---cccHHHHHHHHhc--CCCccccCcCcC
Q 019720 285 NEDPECCICLAKYKEKEEVRKLPCS--H---MFHLKCVDQWLRI--LSCCPLCKQELE 335 (336)
Q Consensus 285 ~~~~~C~ICL~~f~~~~~vr~LPC~--H---~FH~~CI~~WL~~--~~tCPlCR~~I~ 335 (336)
++...|.||+++. ++++ .+||+ | .||.+|+++|++. +.+||+||.++.
T Consensus 4 ~~~~~CrIC~~~~--~~~l-~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 4 EDVPVCWICNEEL--GNER-FRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp CSCCEETTTTEEC--SCCC-CCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCEeEEeecCC--CCce-ecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 4677899999983 3444 68965 4 9999999999975 688999998764
No 57
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.82 E-value=6.1e-10 Score=84.19 Aligned_cols=43 Identities=26% Similarity=0.688 Sum_probs=38.3
Q ss_pred CCCcccccccccccCCceEEeCCCCc-ccHHHHHHHHhcCCCccccCcCcC
Q 019720 286 EDPECCICLAKYKEKEEVRKLPCSHM-FHLKCVDQWLRILSCCPLCKQELE 335 (336)
Q Consensus 286 ~~~~C~ICL~~f~~~~~vr~LPC~H~-FH~~CI~~WL~~~~tCPlCR~~I~ 335 (336)
++..|.||++.+.+. ..+||+|. ||..|+.+| .+||+||.++.
T Consensus 23 ~~~~C~iC~~~~~~~---~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~ 66 (74)
T 4ic3_A 23 EEKLCKICMDRNIAI---VFVPCGHLVTCKQCAEAV----DKCPMCYTVIT 66 (74)
T ss_dssp HHTBCTTTSSSBCCE---EEETTCCBCCCHHHHTTC----SBCTTTCCBCS
T ss_pred cCCCCCCCCCCCCCE---EEcCCCChhHHHHhhhcC----ccCCCcCcCcc
Confidence 456899999988775 77899999 999999999 89999999875
No 58
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.81 E-value=6e-10 Score=91.25 Aligned_cols=45 Identities=27% Similarity=0.601 Sum_probs=40.3
Q ss_pred CCCcccccccccccCCceEEe-CCCCcccHHHHHHHHhcCCCccccCcCcC
Q 019720 286 EDPECCICLAKYKEKEEVRKL-PCSHMFHLKCVDQWLRILSCCPLCKQELE 335 (336)
Q Consensus 286 ~~~~C~ICL~~f~~~~~vr~L-PC~H~FH~~CI~~WL~~~~tCPlCR~~I~ 335 (336)
++..|+||++.|.++ ..+ ||||.||..||.+|++ ..||+||.++.
T Consensus 21 ~~~~C~IC~~~~~~p---v~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~ 66 (117)
T 1jm7_B 21 KLLRCSRCTNILREP---VCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAW 66 (117)
T ss_dssp HTTSCSSSCSCCSSC---BCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCS
T ss_pred hCCCCCCCChHhhCc---cEeCCCCCHHHHHHHHHHhc--CCCcCCCCcCc
Confidence 567899999999887 566 8999999999999998 88999999874
No 59
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.76 E-value=1.7e-09 Score=103.93 Aligned_cols=52 Identities=35% Similarity=0.807 Sum_probs=41.3
Q ss_pred CCCCCcccccccccccCCceE-----EeCCCCcccHHHHHHHHhcC-----------CCccccCcCcC
Q 019720 284 ANEDPECCICLAKYKEKEEVR-----KLPCSHMFHLKCVDQWLRIL-----------SCCPLCKQELE 335 (336)
Q Consensus 284 ~~~~~~C~ICL~~f~~~~~vr-----~LPC~H~FH~~CI~~WL~~~-----------~tCPlCR~~I~ 335 (336)
.++..+|+||++.+.++.++- -.+|+|.||..|+.+||+.. .+||+||++|.
T Consensus 305 ee~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 305 DNEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp CCSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred ccCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 456789999999999844332 23599999999999999752 46999999874
No 60
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.75 E-value=7.2e-09 Score=77.27 Aligned_cols=48 Identities=25% Similarity=0.654 Sum_probs=39.7
Q ss_pred CCCCCCCcccccccccccCCceEEeCCCCc-ccHHHHHHHHhcCCCccccCcCcCC
Q 019720 282 APANEDPECCICLAKYKEKEEVRKLPCSHM-FHLKCVDQWLRILSCCPLCKQELER 336 (336)
Q Consensus 282 ~~~~~~~~C~ICL~~f~~~~~vr~LPC~H~-FH~~CI~~WL~~~~tCPlCR~~I~~ 336 (336)
....++.+|.||++...+. ..+||+|. |+.+|+.. ...||+||.+|.+
T Consensus 10 ~~~~~~~~C~IC~~~~~~~---v~~pCgH~~~C~~C~~~----~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 10 PSEENSKDCVVCQNGTVNW---VLLPCRHTCLCDGCVKY----FQQCPMCRQFVQE 58 (68)
T ss_dssp CSCCCSSCCSSSSSSCCCC---EETTTTBCCSCTTHHHH----CSSCTTTCCCCCC
T ss_pred ccCCCCCCCCCcCcCCCCE---EEECCCChhhhHHHHhc----CCCCCCCCcchhc
Confidence 3445678999999986654 88999999 99999984 5789999998863
No 61
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.71 E-value=9.1e-09 Score=94.85 Aligned_cols=50 Identities=14% Similarity=0.161 Sum_probs=44.0
Q ss_pred CCCCCCcccccccccccCCceEEeCCCCcccHHHHHHHHhcC-CCccccCcCcC
Q 019720 283 PANEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRIL-SCCPLCKQELE 335 (336)
Q Consensus 283 ~~~~~~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~~~-~tCPlCR~~I~ 335 (336)
...++..|+||++-+.++ ..+||||.|++.||.+|+..+ .+||+||.++.
T Consensus 204 ~~~~~~~c~i~~~~~~dP---v~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~ 254 (281)
T 2c2l_A 204 DIPDYLCGKISFELMREP---CITPSGITYDRKDIEEHLQRVGHFNPVTRSPLT 254 (281)
T ss_dssp CCCSTTBCTTTCSBCSSE---EECSSCCEEETTHHHHHHHHTCSSCTTTCCCCC
T ss_pred CCCcccCCcCcCCHhcCC---eECCCCCEECHHHHHHHHHHCCCCCcCCCCCCc
Confidence 446788999999999999 789999999999999999864 55999999874
No 62
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.69 E-value=6.3e-09 Score=90.28 Aligned_cols=49 Identities=31% Similarity=0.585 Sum_probs=42.9
Q ss_pred CCCCCcccccccccccCCceEEeCCCCcccHHHHHHHHhcC-CCccccCcCcC
Q 019720 284 ANEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRIL-SCCPLCKQELE 335 (336)
Q Consensus 284 ~~~~~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~~~-~tCPlCR~~I~ 335 (336)
..++..|+||++.+.++ ..++|||.||..||.+|++.+ .+||+||.++.
T Consensus 15 ~~~~~~C~IC~~~~~~p---v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 64 (170)
T 3hcs_A 15 LESKYECPICLMALREA---VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILL 64 (170)
T ss_dssp CCGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCC
T ss_pred CCCCCCCCCCChhhcCc---EECCCCCHHHHHHHHHHHHhCCCCCCCCccCcc
Confidence 35678999999999988 668999999999999999764 59999999874
No 63
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.69 E-value=7.6e-09 Score=81.72 Aligned_cols=46 Identities=20% Similarity=0.444 Sum_probs=40.3
Q ss_pred CCCCcccccccccccCCceEEeC-CCCcccHHHHHHHHhcC------CCccc--cCcC
Q 019720 285 NEDPECCICLAKYKEKEEVRKLP-CSHMFHLKCVDQWLRIL------SCCPL--CKQE 333 (336)
Q Consensus 285 ~~~~~C~ICL~~f~~~~~vr~LP-C~H~FH~~CI~~WL~~~------~tCPl--CR~~ 333 (336)
.++..|+||++.|.++ ..+| |||.|++.||.+|+..+ .+||+ |+..
T Consensus 5 ~~~~~CPI~~~~~~dP---V~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 5 SSGFTCPITKEEMKKP---VKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SSCCBCTTTCSBCSSE---EEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred CcEeECcCcCchhcCC---EEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 5678999999999998 7786 99999999999999764 48999 9855
No 64
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.64 E-value=5.5e-09 Score=78.95 Aligned_cols=44 Identities=25% Similarity=0.681 Sum_probs=37.0
Q ss_pred CCCcccccccccccCCceEEeCCCCc-ccHHHHHHHHhcCCCccccCcCcCC
Q 019720 286 EDPECCICLAKYKEKEEVRKLPCSHM-FHLKCVDQWLRILSCCPLCKQELER 336 (336)
Q Consensus 286 ~~~~C~ICL~~f~~~~~vr~LPC~H~-FH~~CI~~WL~~~~tCPlCR~~I~~ 336 (336)
++.+|.||++.+.+. ..+||+|. ||.+|+.+ ...||+||.++++
T Consensus 24 ~~~~C~IC~~~~~~~---~~~pCgH~~~C~~C~~~----~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 24 EEKLCKICMDRNIAI---VFVPCGHLVTCKQCAEA----VDKCPMCYTVITF 68 (75)
T ss_dssp HHHSCSSSCSSCCCB---CCSSSCCCCBCHHHHHH----CSBCTTTCCBCCC
T ss_pred CCCCCCcCCCCCCCE---EEecCCCHHHHHHHhhC----CCCCccCCceecC
Confidence 456899999998776 66899999 99999964 4789999998853
No 65
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.57 E-value=2.8e-08 Score=78.05 Aligned_cols=49 Identities=22% Similarity=0.670 Sum_probs=40.9
Q ss_pred CCCCcccccccccccCCceEEeCCCCcccHHHHHHHHhc--------CCCccc--cCcC
Q 019720 285 NEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRI--------LSCCPL--CKQE 333 (336)
Q Consensus 285 ~~~~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~~--------~~tCPl--CR~~ 333 (336)
.+..+|+||++++.+++-+...+|+|.||.+|+.++++. ..+||. |+..
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 3 SGSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp CSBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 456789999999988766665689999999999999864 237999 9987
No 66
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.51 E-value=6.4e-08 Score=85.45 Aligned_cols=50 Identities=14% Similarity=0.153 Sum_probs=44.1
Q ss_pred CCCCCCcccccccccccCCceEEeCCCCcccHHHHHHHHhcC-CCccccCcCcC
Q 019720 283 PANEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRIL-SCCPLCKQELE 335 (336)
Q Consensus 283 ~~~~~~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~~~-~tCPlCR~~I~ 335 (336)
...++..|+||++-+.++ ..+||||.|++.||.+|+..+ .+||+|+.++.
T Consensus 102 ~ip~~f~CPI~~elm~DP---V~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~ 152 (179)
T 2f42_A 102 EIPDYLCGKISFELMREP---CITPSGITYDRKDIEEHLQRVGHFDPVTRSPLT 152 (179)
T ss_dssp CCCGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCcHhhcccCccccCCCC---eECCCCCEECHHHHHHHHHhCCCCCCCCcCCCC
Confidence 346788999999999998 778999999999999999874 57999999874
No 67
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.49 E-value=1.9e-08 Score=77.05 Aligned_cols=43 Identities=28% Similarity=0.690 Sum_probs=36.9
Q ss_pred CCCcccccccccccCCceEEeCCCCc-ccHHHHHHHHhcCCCccccCcCcC
Q 019720 286 EDPECCICLAKYKEKEEVRKLPCSHM-FHLKCVDQWLRILSCCPLCKQELE 335 (336)
Q Consensus 286 ~~~~C~ICL~~f~~~~~vr~LPC~H~-FH~~CI~~WL~~~~tCPlCR~~I~ 335 (336)
++..|.||++...+. ..+||||. |+.+|+.+| ..||+||.++.
T Consensus 17 ~~~~C~IC~~~~~~~---v~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~ 60 (79)
T 2yho_A 17 EAMLCMVCCEEEINS---TFCPCGHTVCCESCAAQL----QSCPVCRSRVE 60 (79)
T ss_dssp HHTBCTTTSSSBCCE---EEETTCBCCBCHHHHTTC----SBCTTTCCBCC
T ss_pred CCCEeEEeCcccCcE---EEECCCCHHHHHHHHHhc----CcCCCCCchhh
Confidence 456899999987665 78999999 999999987 49999999875
No 68
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.35 E-value=1.7e-07 Score=68.45 Aligned_cols=46 Identities=13% Similarity=0.187 Sum_probs=41.0
Q ss_pred CCcccccccccccCCceEEe-CCCCcccHHHHHHHHhcCCCccccCcCcC
Q 019720 287 DPECCICLAKYKEKEEVRKL-PCSHMFHLKCVDQWLRILSCCPLCKQELE 335 (336)
Q Consensus 287 ~~~C~ICL~~f~~~~~vr~L-PC~H~FH~~CI~~WL~~~~tCPlCR~~I~ 335 (336)
...|+||++.++++ ..+ +|||+|.++||.+|++.+.+||+++.++.
T Consensus 3 ~~~CpIs~~~m~dP---V~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~ 49 (61)
T 2bay_A 3 HMLCAISGKVPRRP---VLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLS 49 (61)
T ss_dssp -CCCTTTCSCCSSE---EEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCC
T ss_pred eEEecCCCCCCCCC---EEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCC
Confidence 35799999999987 667 79999999999999999899999999874
No 69
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.33 E-value=9.4e-08 Score=92.49 Aligned_cols=44 Identities=25% Similarity=0.736 Sum_probs=39.0
Q ss_pred CCCCcccccccccccCCceEEeCCCCc-ccHHHHHHHHhcCCCccccCcCcC
Q 019720 285 NEDPECCICLAKYKEKEEVRKLPCSHM-FHLKCVDQWLRILSCCPLCKQELE 335 (336)
Q Consensus 285 ~~~~~C~ICL~~f~~~~~vr~LPC~H~-FH~~CI~~WL~~~~tCPlCR~~I~ 335 (336)
.++..|+||++.+.+. ..+||||. ||..|+..| ..||+||.+++
T Consensus 293 ~~~~~C~IC~~~~~~~---v~lpCgH~~fC~~C~~~~----~~CP~CR~~i~ 337 (345)
T 3t6p_A 293 QEERTCKVCMDKEVSV---VFIPCGHLVVCQECAPSL----RKCPICRGIIK 337 (345)
T ss_dssp HTTCBCTTTSSSBCCE---EEETTCCEEECTTTGGGC----SBCTTTCCBCC
T ss_pred cCCCCCCccCCcCCce---EEcCCCChhHhHHHHhcC----CcCCCCCCCcc
Confidence 3567999999998776 77899999 999999988 78999999885
No 70
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.22 E-value=5.8e-07 Score=83.53 Aligned_cols=50 Identities=22% Similarity=0.503 Sum_probs=41.7
Q ss_pred CCCCCcccccccccccCCceEEeCCCCcccHHHHHHHHhcC--CCccc--cCcCcC
Q 019720 284 ANEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRIL--SCCPL--CKQELE 335 (336)
Q Consensus 284 ~~~~~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~~~--~tCPl--CR~~I~ 335 (336)
...+..|+||++.|.++ |+.+.|||.|++.||.+|++.+ .+||+ ||+.+.
T Consensus 178 ~~~el~CPIcl~~f~DP--Vts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~ 231 (267)
T 3htk_C 178 GKIELTCPITCKPYEAP--LISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVS 231 (267)
T ss_dssp SBCCSBCTTTSSBCSSE--EEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEEC
T ss_pred CceeeECcCccCcccCC--eeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCc
Confidence 45678999999999888 3335899999999999999764 47999 998763
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.99 E-value=3.6e-06 Score=67.02 Aligned_cols=45 Identities=27% Similarity=0.518 Sum_probs=37.2
Q ss_pred cccccccccccCCceEEeCCCCcccHHHHHHHHhc-CCCccccCcCcC
Q 019720 289 ECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRI-LSCCPLCKQELE 335 (336)
Q Consensus 289 ~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~~-~~tCPlCR~~I~ 335 (336)
-|.+|--.+.. ..|.+||+|+|+.+|+..|.++ .++||.|+.+|+
T Consensus 3 fC~~C~~Pi~i--ygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~ 48 (101)
T 3vk6_A 3 FCDKCGLPIKV--YGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQ 48 (101)
T ss_dssp BCTTTCSBCSE--EEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCS
T ss_pred ecCccCCCeEE--EeeeccccccHHHHHHHHHHhccCCCCcCcCCeee
Confidence 36777666544 4699999999999999999865 689999999885
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=97.61 E-value=2.3e-05 Score=72.02 Aligned_cols=48 Identities=23% Similarity=0.558 Sum_probs=39.6
Q ss_pred CCCcccccccccccCCceEEeCCCCcccHHHHHHHHhcCC--CccccCcCcC
Q 019720 286 EDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILS--CCPLCKQELE 335 (336)
Q Consensus 286 ~~~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~~~~--tCPlCR~~I~ 335 (336)
...+|.||.+-...|.... .|+|.||..|+++|++.+. +||.|+.+.+
T Consensus 179 ~i~~C~iC~~iv~~g~~C~--~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~ 228 (238)
T 3nw0_A 179 AVKICNICHSLLIQGQSCE--TCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 228 (238)
T ss_dssp TCCBCTTTCSBCSSCEECS--SSCCEECHHHHHHHTTTCSSCBCTTTCCBCC
T ss_pred CCCcCcchhhHHhCCcccC--ccChHHHHHHHHHHHHhCCCCCCCCCCCCCC
Confidence 4678999999999884332 2999999999999998754 8999998753
No 73
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=94.37 E-value=0.025 Score=44.07 Aligned_cols=35 Identities=14% Similarity=0.295 Sum_probs=28.2
Q ss_pred CCCcccccccccccCCceEEeCCCCcccHHHHHHH
Q 019720 286 EDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQW 320 (336)
Q Consensus 286 ~~~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~W 320 (336)
++..|.||++++..+....-++|+|.|+..|+..+
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKAT 36 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHH
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHH
Confidence 46789999988655544455899999999999983
No 74
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=92.64 E-value=0.067 Score=39.17 Aligned_cols=46 Identities=20% Similarity=0.432 Sum_probs=32.3
Q ss_pred CCCCcccccccccccCCceEEeCCCCcccHHHHHHHHhcCC----CccccCcC
Q 019720 285 NEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILS----CCPLCKQE 333 (336)
Q Consensus 285 ~~~~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~~~~----tCPlCR~~ 333 (336)
..+..|.||.+ .++-+.--.|...||..|++..|.... .||.|+..
T Consensus 10 ~~~~~C~vC~~---~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 10 APGARCGVCGD---GTDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp CTTCCCTTTSC---CTTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred CCCCCcCCCCC---CCeEEECCCCCCceecccCCCccCcCCCCCEECccccCC
Confidence 45678999974 233222222789999999998886542 59999764
No 75
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=92.37 E-value=0.07 Score=41.81 Aligned_cols=46 Identities=28% Similarity=0.616 Sum_probs=37.2
Q ss_pred CCCCcccccccccccCCceEEeCC-CCcccHHHHHHHHhcCCCccccCcCcC
Q 019720 285 NEDPECCICLAKYKEKEEVRKLPC-SHMFHLKCVDQWLRILSCCPLCKQELE 335 (336)
Q Consensus 285 ~~~~~C~ICL~~f~~~~~vr~LPC-~H~FH~~CI~~WL~~~~tCPlCR~~I~ 335 (336)
-+..-|-.|+-+.+. .+.| .|..|..|+..-|.....||+|++++.
T Consensus 26 ~G~~nCKsCWf~~k~-----LV~C~dHYLCl~CLtlmL~~SdrCpIC~~pLP 72 (99)
T 2ko5_A 26 LGPQFCKSCWFENKG-----LVECNNHYLCLNCLTLLLSVSNRCPICKMPLP 72 (99)
T ss_dssp SCCCCCCSSCSCCSS-----EEECSSCEEEHHHHHHTCSSSSEETTTTEECC
T ss_pred cCcccChhhccccCC-----eeeecchhhHHHHHHHHHhhccCCcccCCcCC
Confidence 455679999966432 3347 699999999999999999999999874
No 76
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=88.50 E-value=0.38 Score=36.90 Aligned_cols=34 Identities=26% Similarity=0.748 Sum_probs=25.0
Q ss_pred CCCCCCcccccccccccCCceEEeC---CCCcccHHHHHHH
Q 019720 283 PANEDPECCICLAKYKEKEEVRKLP---CSHMFHLKCVDQW 320 (336)
Q Consensus 283 ~~~~~~~C~ICL~~f~~~~~vr~LP---C~H~FH~~CI~~W 320 (336)
....|..|.||- .+..+ ..+| |+-+||..|+.+=
T Consensus 11 ~~~~D~~C~VC~-~~t~~---~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 11 PVVNDEMCDVCE-VWTAE---SLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCCCSCCCTTTC-CCCSS---CCSSCSSSSSCCCHHHHHHH
T ss_pred CCCCCcccCccc-ccccc---ceeccccccccccHhhcccc
Confidence 345788999985 33344 3456 6899999999985
No 77
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=86.70 E-value=0.16 Score=36.39 Aligned_cols=49 Identities=27% Similarity=0.433 Sum_probs=33.9
Q ss_pred CCCCcccccccccccCCceEEe-CCCCcccHHHHHHHHh-----cCCCccccCcC
Q 019720 285 NEDPECCICLAKYKEKEEVRKL-PCSHMFHLKCVDQWLR-----ILSCCPLCKQE 333 (336)
Q Consensus 285 ~~~~~C~ICL~~f~~~~~vr~L-PC~H~FH~~CI~~WL~-----~~~tCPlCR~~ 333 (336)
+++..|+||...+.++.....= .|..-||..|+.---. ..-.||.|+..
T Consensus 4 ~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 5677899999998765433222 2789999999864322 24569999753
No 78
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=85.51 E-value=0.42 Score=34.10 Aligned_cols=47 Identities=23% Similarity=0.584 Sum_probs=31.7
Q ss_pred CCCCCcccccccccccCCceEEeCCCCcccHHHHHHHHhc----CCCccccCcC
Q 019720 284 ANEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRI----LSCCPLCKQE 333 (336)
Q Consensus 284 ~~~~~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~~----~~tCPlCR~~ 333 (336)
..++..|.+|... ++-+.--.|...||..|++.=+.. .=.||.|++.
T Consensus 8 ~~~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 8 TDHQDYCEVCQQG---GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp SCCCSSCTTTSCC---SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred CCCCCCCccCCCC---CcEEECCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 3567789999863 332222227899999999975543 2359999763
No 79
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=83.69 E-value=0.43 Score=32.50 Aligned_cols=46 Identities=26% Similarity=0.569 Sum_probs=29.4
Q ss_pred CcccccccccccCCceEEeCCCCcccHHHHHHHHhcC----CCccccCcC
Q 019720 288 PECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRIL----SCCPLCKQE 333 (336)
Q Consensus 288 ~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~~~----~tCPlCR~~ 333 (336)
+.|.||...-+.++-+.--.|...||..|++.=+... =.||.|+..
T Consensus 1 a~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~~ 50 (51)
T 1f62_A 1 ARCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQPA 50 (51)
T ss_dssp CCCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSCC
T ss_pred CCCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCcccc
Confidence 3588998764433322222378999999997644332 249999753
No 80
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=81.59 E-value=0.21 Score=35.00 Aligned_cols=46 Identities=26% Similarity=0.685 Sum_probs=31.1
Q ss_pred CCCCCcccccccccccCCceEEeCCCCcccHHHHHHHHhcC----CCccccCc
Q 019720 284 ANEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRIL----SCCPLCKQ 332 (336)
Q Consensus 284 ~~~~~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~~~----~tCPlCR~ 332 (336)
..++..|.+|... ++-+.--.|...||..|++.=+... =.||.|+.
T Consensus 6 ~~~~~~C~vC~~~---g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 6 SGHEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp CSSCCSCSSSCCS---SCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCCccCCCC---CeEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 4567789999864 3322222378999999998655432 24999864
No 81
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=80.14 E-value=0.42 Score=34.12 Aligned_cols=47 Identities=21% Similarity=0.463 Sum_probs=31.1
Q ss_pred CCCCcccccccccccCCceEEeCCCCcccHHHHHHHHhcC----CCccccCcCc
Q 019720 285 NEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRIL----SCCPLCKQEL 334 (336)
Q Consensus 285 ~~~~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~~~----~tCPlCR~~I 334 (336)
.++..|.+|... ++-+.--.|...||..|++.=+... =.||.|+...
T Consensus 7 ~~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 7 HHMEFCRVCKDG---GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp SSCSSCTTTCCC---SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred CCCCcCCCCCCC---CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCch
Confidence 467789999752 3222222278999999998655432 2599998754
No 82
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=79.91 E-value=0.33 Score=35.89 Aligned_cols=50 Identities=20% Similarity=0.367 Sum_probs=32.9
Q ss_pred CCCCcccccccccccCCceEEe-CCCCcccHHHHHHHHhc----CCCccccCcCcC
Q 019720 285 NEDPECCICLAKYKEKEEVRKL-PCSHMFHLKCVDQWLRI----LSCCPLCKQELE 335 (336)
Q Consensus 285 ~~~~~C~ICL~~f~~~~~vr~L-PC~H~FH~~CI~~WL~~----~~tCPlCR~~I~ 335 (336)
.+...|.||..... ++....= -|..-||..|+..-... .-.||.|+..+.
T Consensus 16 ~~~~~C~~C~~~~~-~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 16 NQIWICPGCNKPDD-GSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp CEEECBTTTTBCCS-SCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred CCCcCCCCCCCCCC-CCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence 45567999988754 3222221 27899999999765432 345999987654
No 83
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=79.80 E-value=1.3 Score=47.71 Aligned_cols=51 Identities=16% Similarity=0.092 Sum_probs=44.8
Q ss_pred CCCCCCCcccccccccccCCceEEeCCC-CcccHHHHHHHHhcCCCccccCcCcC
Q 019720 282 APANEDPECCICLAKYKEKEEVRKLPCS-HMFHLKCVDQWLRILSCCPLCKQELE 335 (336)
Q Consensus 282 ~~~~~~~~C~ICL~~f~~~~~vr~LPC~-H~FH~~CI~~WL~~~~tCPlCR~~I~ 335 (336)
...+++..|+|-++-+.|+ ..+|-| +.|-+.+|.+||..+.+||.=|.++.
T Consensus 886 ~~iP~~F~cPIs~~lM~DP---VilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~ 937 (968)
T 3m62_A 886 GDVPDEFLDPLMYTIMKDP---VILPASKMNIDRSTIKAHLLSDSTDPFNRMPLK 937 (968)
T ss_dssp CCSCGGGBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCC
T ss_pred cCCcHHhCCcchhhHHhCC---eEcCCCCEEECHHHHHHHHhcCCCCCCCCCCCC
Confidence 3457788999999999999 889987 68999999999999999999888764
No 84
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=76.96 E-value=2 Score=29.36 Aligned_cols=43 Identities=23% Similarity=0.337 Sum_probs=29.6
Q ss_pred cccccccccccCCceEEe--CCCCcccHHHHHHH----HhcCCCccccC
Q 019720 289 ECCICLAKYKEKEEVRKL--PCSHMFHLKCVDQW----LRILSCCPLCK 331 (336)
Q Consensus 289 ~C~ICL~~f~~~~~vr~L--PC~H~FH~~CI~~W----L~~~~tCPlCR 331 (336)
.|++|...+.+++....= .|..-||..|+.-- ...+-.||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 588999998766543332 37789999998532 13467799985
No 85
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=76.16 E-value=0.74 Score=36.50 Aligned_cols=38 Identities=16% Similarity=0.401 Sum_probs=26.7
Q ss_pred CCCCcccccccccccCCceEEeCCCCcccHHHHHHHHh
Q 019720 285 NEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLR 322 (336)
Q Consensus 285 ~~~~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~ 322 (336)
.++..|.||.+.=+..+-+.--.|...||..|++..+.
T Consensus 5 ~~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~ 42 (111)
T 2ysm_A 5 SSGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVT 42 (111)
T ss_dssp CCCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCC
T ss_pred CCCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccc
Confidence 56789999987633222233334899999999988764
No 86
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=75.70 E-value=3.8 Score=31.28 Aligned_cols=51 Identities=22% Similarity=0.356 Sum_probs=31.5
Q ss_pred CCCCCCcccccccccc-cCCceEEeC-CCCcccHHHHHHHHh--cCCCccccCcC
Q 019720 283 PANEDPECCICLAKYK-EKEEVRKLP-CSHMFHLKCVDQWLR--ILSCCPLCKQE 333 (336)
Q Consensus 283 ~~~~~~~C~ICL~~f~-~~~~vr~LP-C~H~FH~~CI~~WL~--~~~tCPlCR~~ 333 (336)
..+++..|.||...-. +++++..=. |.-.||..|+..=+. ..=.||.|+..
T Consensus 21 ~~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~ 75 (88)
T 2l43_A 21 LIDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQS 75 (88)
T ss_dssp CCCCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHH
T ss_pred cCCCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCc
Confidence 3457789999987642 222222212 788999999975321 12359998653
No 87
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=74.91 E-value=2.7 Score=31.26 Aligned_cols=48 Identities=25% Similarity=0.491 Sum_probs=30.6
Q ss_pred CCCcccccccccccCCceEEe-CCCCcccHHHHHHHHh-----cCCCccccCcC
Q 019720 286 EDPECCICLAKYKEKEEVRKL-PCSHMFHLKCVDQWLR-----ILSCCPLCKQE 333 (336)
Q Consensus 286 ~~~~C~ICL~~f~~~~~vr~L-PC~H~FH~~CI~~WL~-----~~~tCPlCR~~ 333 (336)
++..-+||...++++.....= -|..-||..|+.---. ..-.||.|+..
T Consensus 10 ~~~~~C~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~ 63 (79)
T 1wep_A 10 LVPVYCLCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAV 63 (79)
T ss_dssp CCCCCSTTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTT
T ss_pred CCccEEEcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCcccc
Confidence 344455999988644332222 2789999999953211 24569999864
No 88
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=74.60 E-value=0.43 Score=34.55 Aligned_cols=46 Identities=30% Similarity=0.614 Sum_probs=30.9
Q ss_pred CCCCcccccccccccCCceEEeCCCCcccHHHHHHHHhcC----CCccccCcC
Q 019720 285 NEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRIL----SCCPLCKQE 333 (336)
Q Consensus 285 ~~~~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~~~----~tCPlCR~~ 333 (336)
.++..|.||... ++-+.-=.|...||..|++.=+... =.||.|+..
T Consensus 6 ~~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~ 55 (66)
T 1xwh_A 6 KNEDECAVCRDG---GELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQA 55 (66)
T ss_dssp SCCCSBSSSSCC---SSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHT
T ss_pred CCCCCCccCCCC---CCEEEcCCCChhhcccccCCCcCcCCCCCeECccccCc
Confidence 567889999853 3322222278999999998655432 249999753
No 89
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=73.99 E-value=1.5 Score=32.29 Aligned_cols=47 Identities=26% Similarity=0.419 Sum_probs=29.7
Q ss_pred CCcccccccccccCCceEEeCCCCcccHHHHHHH------H---hcCCCccccCcC
Q 019720 287 DPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQW------L---RILSCCPLCKQE 333 (336)
Q Consensus 287 ~~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~W------L---~~~~tCPlCR~~ 333 (336)
+..-+||...+.++.-+.---|..-||..|+.-- + ..+-.||.|+..
T Consensus 15 ~~~~C~C~~~~~~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~ 70 (76)
T 1wem_A 15 NALYCICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTIL 70 (76)
T ss_dssp TCCCSTTCCCCCSSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHH
T ss_pred CCCEEECCCccCCCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCc
Confidence 3455599988764322222227899999999421 1 245789999753
No 90
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=73.63 E-value=1.2 Score=34.36 Aligned_cols=48 Identities=25% Similarity=0.487 Sum_probs=32.4
Q ss_pred CCCCCCCcccccccccccCCceEEeCCCCcccHHHHHHHHhcC----CCccccCc
Q 019720 282 APANEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRIL----SCCPLCKQ 332 (336)
Q Consensus 282 ~~~~~~~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~~~----~tCPlCR~ 332 (336)
....++..|.+|... ++-+.--.|.-.||..|+++=|..- =.||.|+.
T Consensus 20 ~~d~n~~~C~vC~~~---g~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~ 71 (88)
T 1fp0_A 20 TLDDSATICRVCQKP---GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHV 71 (88)
T ss_dssp SSSSSSSCCSSSCSS---SCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCC
T ss_pred ccCCCCCcCcCcCCC---CCEEECCCCCCceecccCCCCCCCCcCCCcCCccccC
Confidence 334567899999854 4322222278999999998766442 25999975
No 91
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=72.11 E-value=2.8 Score=30.26 Aligned_cols=35 Identities=20% Similarity=0.518 Sum_probs=25.0
Q ss_pred CCCCCcccccccccccCCceEEe--CCCCcccHHHHH
Q 019720 284 ANEDPECCICLAKYKEKEEVRKL--PCSHMFHLKCVD 318 (336)
Q Consensus 284 ~~~~~~C~ICL~~f~~~~~vr~L--PC~H~FH~~CI~ 318 (336)
.+....|++|...|.+++....- .|.--||.+|+.
T Consensus 5 ~~~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvg 41 (65)
T 2vpb_A 5 SDPVYPCGICTNEVNDDQDAILCEASCQKWFHRICTG 41 (65)
T ss_dssp ----CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHT
T ss_pred CCCcCcCccCCCccCCCCCeEecccCccccCchhccC
Confidence 35667899999999877654443 488999999984
No 92
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=71.92 E-value=0.57 Score=36.29 Aligned_cols=50 Identities=18% Similarity=0.332 Sum_probs=32.0
Q ss_pred CCCCCCcccccccccccCCceEEeCCCCcccHHHHHHHHhcC----CCccccCc
Q 019720 283 PANEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRIL----SCCPLCKQ 332 (336)
Q Consensus 283 ~~~~~~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~~~----~tCPlCR~ 332 (336)
...++..|.||...-..++-+.-=-|...||..|++.=|... =.||.|+.
T Consensus 12 ~~~~~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~ 65 (92)
T 2e6r_A 12 QFIDSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCIL 65 (92)
T ss_dssp CCCCCCCCSSSCCSGGGGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHH
T ss_pred hccCCCCCccCCCcCCCCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcC
Confidence 345667899999774433222211288999999998544332 24999965
No 93
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=69.88 E-value=3.1 Score=32.17 Aligned_cols=42 Identities=38% Similarity=0.812 Sum_probs=26.7
Q ss_pred CCcccccccccccCCceEEeCC-----C-CcccHHHHHHHHhc----CCCccccCcCc
Q 019720 287 DPECCICLAKYKEKEEVRKLPC-----S-HMFHLKCVDQWLRI----LSCCPLCKQEL 334 (336)
Q Consensus 287 ~~~C~ICL~~f~~~~~vr~LPC-----~-H~FH~~CI~~WL~~----~~tCPlCR~~I 334 (336)
+...+||-.... ++ .+-| . .-||..|+. |.. +-.||.|+..-
T Consensus 35 e~~yCiC~~~~~-g~---MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 35 EPTYCLCHQVSY-GE---MIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 86 (91)
T ss_dssp CCBCSTTCCBCC-SC---CCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCC
T ss_pred CCcEEECCCCCC-CC---EeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCcC
Confidence 334449988653 32 3334 3 579999997 443 23599998754
No 94
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=68.06 E-value=2.7 Score=29.95 Aligned_cols=49 Identities=20% Similarity=0.455 Sum_probs=32.5
Q ss_pred CCCCcccccccccccCCceEEe--CCCCcccHHHHHHHHh-------cCCCccccCcC
Q 019720 285 NEDPECCICLAKYKEKEEVRKL--PCSHMFHLKCVDQWLR-------ILSCCPLCKQE 333 (336)
Q Consensus 285 ~~~~~C~ICL~~f~~~~~vr~L--PC~H~FH~~CI~~WL~-------~~~tCPlCR~~ 333 (336)
.++..|.||.....+++.-.++ .|...||..|++.=+. ..=.||.|+..
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~ 61 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFA 61 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHT
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCc
Confidence 5678999999875442222222 2889999999986432 12359999764
No 95
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=67.25 E-value=3.5 Score=30.22 Aligned_cols=42 Identities=38% Similarity=0.738 Sum_probs=26.9
Q ss_pred CCCcccccccccccCCceEEeCC-----C-CcccHHHHHHHHhcC----CCccccCcCc
Q 019720 286 EDPECCICLAKYKEKEEVRKLPC-----S-HMFHLKCVDQWLRIL----SCCPLCKQEL 334 (336)
Q Consensus 286 ~~~~C~ICL~~f~~~~~vr~LPC-----~-H~FH~~CI~~WL~~~----~tCPlCR~~I 334 (336)
+...| ||-.... ++ .+-| . .-||..|+. |... -.||.|+..-
T Consensus 15 ~~~~C-~C~~~~~-g~---MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 15 EPTYC-LCHQVSY-GE---MIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp SCCCS-TTCCCSC-SS---EECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCS
T ss_pred CCCEE-ECCCCCC-CC---EeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCccc
Confidence 34445 8987643 42 3444 3 589999998 4432 3599998754
No 96
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=66.13 E-value=6 Score=29.09 Aligned_cols=41 Identities=20% Similarity=0.472 Sum_probs=30.2
Q ss_pred CCCCcccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCccccCcCcC
Q 019720 285 NEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILSCCPLCKQELE 335 (336)
Q Consensus 285 ~~~~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~ 335 (336)
.....|.-|-..+.+++.+.. -+..||.+| .+|-.|+.++.
T Consensus 13 ~~~~~C~~C~~~I~~~~~v~a--~~~~wH~~C--------F~C~~C~~~L~ 53 (80)
T 2dj7_A 13 RGPSHCAGCKEEIKHGQSLLA--LDKQWHVSC--------FKCQTCSVILT 53 (80)
T ss_dssp SSCSCCTTTCCCCSSSCCEEE--TTEEECTTT--------CBCSSSCCBCS
T ss_pred CCCCCCcCcCCeeCCCeEEEE--CCccccccc--------CCcCcCCCCcC
Confidence 455689999999887765544 478899888 56778877663
No 97
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=65.63 E-value=0.78 Score=32.39 Aligned_cols=46 Identities=26% Similarity=0.666 Sum_probs=30.6
Q ss_pred CCCCcccccccccccCCceEEeCCCCcccHHHHHHHHhcC----CCccccCcC
Q 019720 285 NEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRIL----SCCPLCKQE 333 (336)
Q Consensus 285 ~~~~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~~~----~tCPlCR~~ 333 (336)
.++..|.+|... ++-+.--.|...||..|++.=+... =.||.|+..
T Consensus 3 ~~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 52 (60)
T 2puy_A 3 IHEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQ 52 (60)
T ss_dssp CCCSSCTTTCCC---SSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHH
T ss_pred CCCCCCcCCCCC---CcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccCh
Confidence 356789999864 4322222378999999998655432 249999653
No 98
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=63.47 E-value=1.9 Score=34.24 Aligned_cols=46 Identities=24% Similarity=0.570 Sum_probs=29.7
Q ss_pred CCcccccccccccCCceEEeC-CCCcccHHHHHHHHhcC----CCccccCc
Q 019720 287 DPECCICLAKYKEKEEVRKLP-CSHMFHLKCVDQWLRIL----SCCPLCKQ 332 (336)
Q Consensus 287 ~~~C~ICL~~f~~~~~vr~LP-C~H~FH~~CI~~WL~~~----~tCPlCR~ 332 (336)
-..|.||...-++++++..=. |...||..|++.=|... =.||.|+.
T Consensus 61 C~~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 61 CKTCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp TCCBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred CCccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 346889986533333332222 78999999998655442 25999985
No 99
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=61.90 E-value=8.4 Score=30.43 Aligned_cols=33 Identities=27% Similarity=0.591 Sum_probs=22.0
Q ss_pred CCCcccccccccc-----cCCc-eEEeCCCCcccHHHHH
Q 019720 286 EDPECCICLAKYK-----EKEE-VRKLPCSHMFHLKCVD 318 (336)
Q Consensus 286 ~~~~C~ICL~~f~-----~~~~-vr~LPC~H~FH~~CI~ 318 (336)
....|.+|+..=+ ++++ +.--.|+..||..|++
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~ 42 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLK 42 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHT
T ss_pred cCccccccCCchhhCcCCCchhceEhhhcCCCCCCchhc
Confidence 4568999997631 2222 3323389999999996
No 100
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=61.15 E-value=7 Score=28.04 Aligned_cols=40 Identities=23% Similarity=0.390 Sum_probs=28.5
Q ss_pred CCCcccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCccccCcCcC
Q 019720 286 EDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILSCCPLCKQELE 335 (336)
Q Consensus 286 ~~~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~ 335 (336)
....|.-|-+.+.+++.+. .-+..||.+| .+|-.|+.++.
T Consensus 8 ~~~~C~~C~~~I~~~~~v~--a~~~~~H~~C--------F~C~~C~~~L~ 47 (76)
T 2cu8_A 8 MASKCPKCDKTVYFAEKVS--SLGKDWHKFC--------LKCERCSKTLT 47 (76)
T ss_dssp CCCBCTTTCCBCCTTTEEE--ETTEEEETTT--------CBCSSSCCBCC
T ss_pred CCCCCcCCCCEeECCeEEE--ECCeEeeCCC--------CCCCCCCCccC
Confidence 4467899988888776544 3578888887 45777777653
No 101
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=60.25 E-value=16 Score=28.19 Aligned_cols=51 Identities=22% Similarity=0.314 Sum_probs=35.8
Q ss_pred CCCCcccccccccccCCc--eEEe--CCCCcccHHHHHHHHh-cCCCccccCcCcC
Q 019720 285 NEDPECCICLAKYKEKEE--VRKL--PCSHMFHLKCVDQWLR-ILSCCPLCKQELE 335 (336)
Q Consensus 285 ~~~~~C~ICL~~f~~~~~--vr~L--PC~H~FH~~CI~~WL~-~~~tCPlCR~~I~ 335 (336)
.....|.||-++....+. +.+. -|+--.|+.|.+-=.+ .++.||-|+...+
T Consensus 14 ~~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 14 LDGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp CSSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred cCCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 355799999998654332 2222 2677889999976554 4799999998754
No 102
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=59.98 E-value=3 Score=32.43 Aligned_cols=46 Identities=22% Similarity=0.343 Sum_probs=29.0
Q ss_pred CCcccccccccccCCceEEeCCCCcccHHHHHHHHhc---CCCccccCc
Q 019720 287 DPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRI---LSCCPLCKQ 332 (336)
Q Consensus 287 ~~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~~---~~tCPlCR~ 332 (336)
+..-+||-...+++.-+.-=.|.--||..|+..=+.. .-.||.|+.
T Consensus 27 d~vrCiC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 27 DVTRCICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp CBCCCTTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred CCEEeECCCccCCCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 3333499887766632222227899999998653221 236999974
No 103
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=58.91 E-value=9.7 Score=27.95 Aligned_cols=41 Identities=27% Similarity=0.543 Sum_probs=28.8
Q ss_pred CCCCCcccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCccccCcCc
Q 019720 284 ANEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILSCCPLCKQEL 334 (336)
Q Consensus 284 ~~~~~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I 334 (336)
......|.-|-..+.+.+.+. .-+..||.+| .+|-.|+.++
T Consensus 12 ~~~~~~C~~C~~~I~~~e~v~--a~~~~wH~~C--------F~C~~C~~~L 52 (82)
T 2co8_A 12 AGAGDLCALCGEHLYVLERLC--VNGHFFHRSC--------FRCHTCEATL 52 (82)
T ss_dssp CCSSCBCSSSCCBCCTTTBCC--BTTBCCBTTT--------CBCSSSCCBC
T ss_pred CCCCCCCcccCCCcccceEEE--ECCCeeCCCc--------CEEcCCCCCc
Confidence 345568999999887766554 3578899888 4566666655
No 104
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=57.66 E-value=6.4 Score=31.27 Aligned_cols=42 Identities=24% Similarity=0.513 Sum_probs=27.2
Q ss_pred CCCCcccccccccccCCceEEe---CCCCcccHHHHHHHHhcCC----CccccCc
Q 019720 285 NEDPECCICLAKYKEKEEVRKL---PCSHMFHLKCVDQWLRILS----CCPLCKQ 332 (336)
Q Consensus 285 ~~~~~C~ICL~~f~~~~~vr~L---PC~H~FH~~CI~~WL~~~~----tCPlCR~ 332 (336)
.++..|.+|.+ .| ++..= .|...||..|++ |.... .||.|+-
T Consensus 13 ~~~~~C~~C~~---~G-~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C 61 (107)
T 4gne_A 13 MHEDYCFQCGD---GG-ELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQC 61 (107)
T ss_dssp SSCSSCTTTCC---CS-EEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBC
T ss_pred CCCCCCCcCCC---CC-cEeEECCCCCCcccccccCc--CCcCCCCCEECCCCCC
Confidence 56678999983 23 33222 266899999998 54422 4887653
No 105
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=56.88 E-value=10 Score=27.69 Aligned_cols=49 Identities=22% Similarity=0.394 Sum_probs=30.9
Q ss_pred CCCCCccccccccc-ccCCceEEeC-CCCcccHHHHHHHHh--cCCCccccCc
Q 019720 284 ANEDPECCICLAKY-KEKEEVRKLP-CSHMFHLKCVDQWLR--ILSCCPLCKQ 332 (336)
Q Consensus 284 ~~~~~~C~ICL~~f-~~~~~vr~LP-C~H~FH~~CI~~WL~--~~~tCPlCR~ 332 (336)
..++..|.||...- ++++++..=. |.-.||..|+..=.. ..=.||.|+.
T Consensus 13 ~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 13 IDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 65 (71)
T ss_dssp CCSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcC
Confidence 35678999998764 2233332222 789999999975321 1225998865
No 106
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=56.46 E-value=11 Score=27.31 Aligned_cols=39 Identities=21% Similarity=0.298 Sum_probs=27.6
Q ss_pred CCCCcccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCccccCcCc
Q 019720 285 NEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILSCCPLCKQEL 334 (336)
Q Consensus 285 ~~~~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I 334 (336)
.....|.-|-+.+.+. .+..-+..||.+|. +|-.|++++
T Consensus 13 ~~~~~C~~C~~~I~~~---~~~a~~~~~H~~CF--------~C~~C~~~L 51 (79)
T 1x62_A 13 QKLPMCDKCGTGIVGV---FVKLRDRHRHPECY--------VCTDCGTNL 51 (79)
T ss_dssp CCCCCCSSSCCCCCSS---CEECSSCEECTTTT--------SCSSSCCCH
T ss_pred CCCCccccCCCCccCc---EEEECcceeCcCcC--------eeCCCCCCC
Confidence 4567899999888753 23446889998884 577777654
No 107
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=56.10 E-value=5.3 Score=28.71 Aligned_cols=43 Identities=7% Similarity=-0.110 Sum_probs=20.9
Q ss_pred CCCcccccccccccCCceEEeCCCCcccH-HHHHHHHhcCCCccccCc
Q 019720 286 EDPECCICLAKYKEKEEVRKLPCSHMFHL-KCVDQWLRILSCCPLCKQ 332 (336)
Q Consensus 286 ~~~~C~ICL~~f~~~~~vr~LPC~H~FH~-~CI~~WL~~~~tCPlCR~ 332 (336)
+-..|..|-..+..+. .. ..=+..|+. .|..+- -...|--|..
T Consensus 26 ~CF~C~~C~~~L~~~~-~~-~~~g~~yC~~~cy~~~--f~~~C~~C~~ 69 (76)
T 1iml_A 26 PCLKCEKCGKTLTSGG-HA-EHEGKPYCNHPCYSAM--FGPKGFGRGG 69 (76)
T ss_dssp TTCBCTTTCCBCCTTT-EE-EETTEEEETTTHHHHH--SSCCCSSCCC
T ss_pred CCCCccccCccCCCCc-eE-CcCCeEeeCHHHHHHH--hCccCCCcCC
Confidence 4456677766665542 11 123455555 355442 2344655544
No 108
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=54.81 E-value=2 Score=31.40 Aligned_cols=46 Identities=20% Similarity=0.338 Sum_probs=29.7
Q ss_pred CCCcccccccccccCCceEEe-CCCCcccHHHHHHHH----hcCCCccccCc
Q 019720 286 EDPECCICLAKYKEKEEVRKL-PCSHMFHLKCVDQWL----RILSCCPLCKQ 332 (336)
Q Consensus 286 ~~~~C~ICL~~f~~~~~vr~L-PC~H~FH~~CI~~WL----~~~~tCPlCR~ 332 (336)
+...| ||-..+.+++....= .|..-||..|+.--- ..+-.||.|+.
T Consensus 15 ~~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~ 65 (72)
T 1wee_A 15 WKVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIE 65 (72)
T ss_dssp SEECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHH
T ss_pred cceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccC
Confidence 34557 898887666433222 278999999986431 22456999975
No 109
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=53.09 E-value=3 Score=31.14 Aligned_cols=44 Identities=25% Similarity=0.539 Sum_probs=28.1
Q ss_pred CcccccccccccCCceEEe-CCCCcccHHHHHHHHhc-----CCCccccCc
Q 019720 288 PECCICLAKYKEKEEVRKL-PCSHMFHLKCVDQWLRI-----LSCCPLCKQ 332 (336)
Q Consensus 288 ~~C~ICL~~f~~~~~vr~L-PC~H~FH~~CI~~WL~~-----~~tCPlCR~ 332 (336)
..|.||...=..+ ++..= .|...||..|++.=|.. .=.||.|+.
T Consensus 27 c~C~vC~~~~~~~-~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 27 CSCRVCGGKHEPN-MQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SSCSSSCCCCCST-TEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCCcCcCCcCCCC-CEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 3788998653333 22221 27899999999854433 125999975
No 110
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=51.85 E-value=2.8 Score=32.03 Aligned_cols=49 Identities=14% Similarity=0.388 Sum_probs=32.2
Q ss_pred CCCCcccccccccccCCceEEeC--CCCcccHHHHHHHHh-----c---CCCccccCcC
Q 019720 285 NEDPECCICLAKYKEKEEVRKLP--CSHMFHLKCVDQWLR-----I---LSCCPLCKQE 333 (336)
Q Consensus 285 ~~~~~C~ICL~~f~~~~~vr~LP--C~H~FH~~CI~~WL~-----~---~~tCPlCR~~ 333 (336)
+++..|.+|...-..++...++- |...||..|++.=|. . .=.||.|+..
T Consensus 14 e~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~ 72 (88)
T 1wev_A 14 EMGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQ 72 (88)
T ss_dssp HHCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHH
T ss_pred CCCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccch
Confidence 35678999997644322223332 799999999987553 1 2359999753
No 111
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=51.23 E-value=8.3 Score=30.31 Aligned_cols=47 Identities=19% Similarity=0.460 Sum_probs=32.9
Q ss_pred CCcccccccccccCCceEEe--CCCCcccHHHHHHHH----h------cCCCccccCcC
Q 019720 287 DPECCICLAKYKEKEEVRKL--PCSHMFHLKCVDQWL----R------ILSCCPLCKQE 333 (336)
Q Consensus 287 ~~~C~ICL~~f~~~~~vr~L--PC~H~FH~~CI~~WL----~------~~~tCPlCR~~ 333 (336)
...|.||...|.++.....= .|..-||.+|+.-=- . .+-.||.|+..
T Consensus 3 ~~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~ 61 (105)
T 2xb1_A 3 VYPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKT 61 (105)
T ss_dssp CCBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHT
T ss_pred cCCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCc
Confidence 45799999999776554433 378999999984221 1 23569999764
No 112
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=51.20 E-value=14 Score=28.07 Aligned_cols=38 Identities=24% Similarity=0.501 Sum_probs=29.4
Q ss_pred CCCCcccccccccccCCceEEeC--CCCcccHHHHHHHHhc
Q 019720 285 NEDPECCICLAKYKEKEEVRKLP--CSHMFHLKCVDQWLRI 323 (336)
Q Consensus 285 ~~~~~C~ICL~~f~~~~~vr~LP--C~H~FH~~CI~~WL~~ 323 (336)
.....|.+|.+.+++..-+. -| =.|.||-.|-+.-++.
T Consensus 13 ~a~l~CtlC~erLEdtHFVQ-CPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 13 SGPLCCTICHERLEDTHFVQ-CPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp CCSCCCSSSCSCCSSTTSEE-CSSCSSCEECHHHHHHHHHH
T ss_pred CCeeEeecchhhhccCceee-CCCccCCeeeccccHHHHHh
Confidence 45678999999999874432 23 1699999999999875
No 113
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=51.03 E-value=15 Score=30.55 Aligned_cols=45 Identities=24% Similarity=0.446 Sum_probs=30.6
Q ss_pred CCCCcccccccccccCCceEEeCCCCcccHHHHHHHHh------c-----CCCccccCc
Q 019720 285 NEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLR------I-----LSCCPLCKQ 332 (336)
Q Consensus 285 ~~~~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~------~-----~~tCPlCR~ 332 (336)
..+..|.+|-+. |+-+--=.|...||..||+.=+. + .=.||.|+.
T Consensus 61 g~~d~C~vC~~G---G~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 61 GMDEQCRWCAEG---GNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp SCBCSCSSSCCC---SSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCCeecccCCC---CcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 456789999843 43222223789999999997653 1 235999974
No 114
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=50.35 E-value=7.8 Score=27.54 Aligned_cols=42 Identities=24% Similarity=0.585 Sum_probs=28.6
Q ss_pred CcccccccccccCCceEEeCCCCcccHHHHHHHHhcC-CCcccc
Q 019720 288 PECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRIL-SCCPLC 330 (336)
Q Consensus 288 ~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~~~-~tCPlC 330 (336)
..|--|...+.+....+--.|+++|+.+| |...... -.||-|
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~FC~dC-D~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNVFCVDC-DVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCCBCHHH-HHTTTTTSCSSSTT
T ss_pred CcccccCcccCCCccEECCccCcCcccch-hHHHHhhccCCcCC
Confidence 45999999986542222222899999999 6655433 579988
No 115
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=49.45 E-value=3.2 Score=30.31 Aligned_cols=44 Identities=25% Similarity=0.620 Sum_probs=27.0
Q ss_pred cccccccccccCCceEEeC-CCCcccHHHHHHHHhc-----CCCccccCcC
Q 019720 289 ECCICLAKYKEKEEVRKLP-CSHMFHLKCVDQWLRI-----LSCCPLCKQE 333 (336)
Q Consensus 289 ~C~ICL~~f~~~~~vr~LP-C~H~FH~~CI~~WL~~-----~~tCPlCR~~ 333 (336)
.|.||...=..+ ++..=- |...||..|++.=|.. .=.||.|+..
T Consensus 20 ~C~~C~~~~~~~-~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~~ 69 (70)
T 3asl_A 20 ACHLCGGRQDPD-KQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 69 (70)
T ss_dssp SBTTTCCCSCGG-GEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSCC
T ss_pred CCcCCCCcCCCC-CEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccCc
Confidence 567777542222 222211 7899999999854433 2259999753
No 116
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=47.16 E-value=2.6 Score=31.49 Aligned_cols=41 Identities=29% Similarity=0.777 Sum_probs=26.3
Q ss_pred cccccccccccCCceEEeC---CCCcccHHHHHHHHhcC-----CCccccCc
Q 019720 289 ECCICLAKYKEKEEVRKLP---CSHMFHLKCVDQWLRIL-----SCCPLCKQ 332 (336)
Q Consensus 289 ~C~ICL~~f~~~~~vr~LP---C~H~FH~~CI~~WL~~~-----~tCPlCR~ 332 (336)
.|.||-..-+.+ ..|- |...||..|++.=|... =.||.|+.
T Consensus 28 ~C~vC~~~~d~~---~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQDPD---KQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCSCGG---GEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCCCCc---ceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 566776553332 2233 78999999999765432 35999975
No 117
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=46.81 E-value=3.4 Score=29.17 Aligned_cols=40 Identities=35% Similarity=0.814 Sum_probs=25.5
Q ss_pred CCcccccccccccCCceEEeCC-----C-CcccHHHHHHHHhcC----CCccccCc
Q 019720 287 DPECCICLAKYKEKEEVRKLPC-----S-HMFHLKCVDQWLRIL----SCCPLCKQ 332 (336)
Q Consensus 287 ~~~C~ICL~~f~~~~~vr~LPC-----~-H~FH~~CI~~WL~~~----~tCPlCR~ 332 (336)
+...+||..... + ..+-| . .-||..|+. |... -.||.|++
T Consensus 9 e~~~C~C~~~~~-g---~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 9 EPTYCLCHQVSY-G---EMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CCEETTTTEECC-S---EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCEEECCCcCC-C---CEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 344559987642 3 23344 3 579999998 5432 35999975
No 118
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=46.26 E-value=3.7 Score=28.95 Aligned_cols=40 Identities=35% Similarity=0.817 Sum_probs=25.5
Q ss_pred CCcccccccccccCCceEEeCC-----C-CcccHHHHHHHHhcC----CCccccCc
Q 019720 287 DPECCICLAKYKEKEEVRKLPC-----S-HMFHLKCVDQWLRIL----SCCPLCKQ 332 (336)
Q Consensus 287 ~~~C~ICL~~f~~~~~vr~LPC-----~-H~FH~~CI~~WL~~~----~tCPlCR~ 332 (336)
+...+||-... .+ ..+-| . .-||..|+. |... -.||.|++
T Consensus 8 e~~yC~C~~~~-~g---~mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 8 EPTYCLCHQVS-YG---EMIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp CCEETTTTEEC-CS---EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCcEEECCCCC-CC---CeeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 34445998764 24 23334 3 589999998 4432 35999975
No 119
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=45.99 E-value=16 Score=35.31 Aligned_cols=45 Identities=20% Similarity=0.507 Sum_probs=30.2
Q ss_pred CCcccccccccccCCceEEeCCCCcccHHHHHHHHhc-----CCCccccCcCc
Q 019720 287 DPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRI-----LSCCPLCKQEL 334 (336)
Q Consensus 287 ~~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~~-----~~tCPlCR~~I 334 (336)
...|++-...+..+ +|-..|.|.=|-+ ++.||.. .-.||+|.+.+
T Consensus 249 SL~CPlS~~ri~~P--vRg~~C~HlQCFD-l~sfL~~~~~~~~W~CPIC~k~~ 298 (371)
T 3i2d_A 249 SLQCPISYTRMKYP--SKSINCKHLQCFD-ALWFLHSQLQIPTWQCPVCQIDI 298 (371)
T ss_dssp ESBCTTTSSBCSSE--EEETTCCSSCCEE-HHHHHHHHHHSCCCBCTTTCCBC
T ss_pred eecCCCcccccccc--CcCCcCCCcceEC-HHHHHHHhhcCCceeCCCCCccc
Confidence 35799888887766 6777899983222 2334432 34699999876
No 120
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=44.23 E-value=27 Score=25.69 Aligned_cols=40 Identities=20% Similarity=0.345 Sum_probs=28.0
Q ss_pred CCCCcccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCccccCcCcC
Q 019720 285 NEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILSCCPLCKQELE 335 (336)
Q Consensus 285 ~~~~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~ 335 (336)
.....|.-|-+.+.+ +. +..-+..||.+| .+|-.|++++.
T Consensus 23 ~~~~~C~~C~~~I~~-~~--~~a~~~~~H~~C--------F~C~~C~~~L~ 62 (89)
T 1x64_A 23 QRMPLCDKCGSGIVG-AV--VKARDKYRHPEC--------FVCADCNLNLK 62 (89)
T ss_dssp CSCCBCTTTCCBCCS-CC--EESSSCEECTTT--------CCCSSSCCCTT
T ss_pred CcCCCcccCCCEecc-cE--EEECCceECccC--------CEecCCCCCCC
Confidence 345679999988875 22 334678999888 45777877663
No 121
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=43.59 E-value=18 Score=34.68 Aligned_cols=46 Identities=20% Similarity=0.400 Sum_probs=30.0
Q ss_pred CCcccccccccccCCceEEeCCCCc--ccHHHHHHHHhc--CCCccccCcCc
Q 019720 287 DPECCICLAKYKEKEEVRKLPCSHM--FHLKCVDQWLRI--LSCCPLCKQEL 334 (336)
Q Consensus 287 ~~~C~ICL~~f~~~~~vr~LPC~H~--FH~~CI~~WL~~--~~tCPlCR~~I 334 (336)
...|+|-...++.+ +|-..|.|. |=.+=+-+.... .-.||+|.+.+
T Consensus 215 SL~CPlS~~ri~~P--~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~ 264 (360)
T 4fo9_A 215 SLMCPLGKMRLTIP--CRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKA 264 (360)
T ss_dssp ESBCTTTCSBCSSE--EEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBC
T ss_pred eeeCCCccceeccC--CcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCccc
Confidence 35799888887766 677789998 433222222222 24699999876
No 122
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=43.48 E-value=27 Score=25.82 Aligned_cols=39 Identities=26% Similarity=0.651 Sum_probs=23.6
Q ss_pred CCCcccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCccccCcCc
Q 019720 286 EDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILSCCPLCKQEL 334 (336)
Q Consensus 286 ~~~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I 334 (336)
....|.-|-..+.+.+.+ ..-+..||.+| .+|-.|+.++
T Consensus 14 ~~~~C~~C~~~I~~~~~v--~a~~~~~H~~C--------F~C~~C~~~L 52 (91)
T 2d8y_A 14 ARETCVECQKTVYPMERL--LANQQVFHISC--------FRCSYCNNKL 52 (91)
T ss_dssp SSCBCTTTCCBCCTTSEE--ECSSSEEETTT--------CBCTTTCCBC
T ss_pred CCCcCccCCCccCCceeE--EECCCEECCCC--------CeeCCCCCCC
Confidence 345677777777765533 34567777777 3455555544
No 123
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=43.19 E-value=4.5 Score=29.37 Aligned_cols=46 Identities=17% Similarity=0.497 Sum_probs=28.3
Q ss_pred CCCcccccccccccCCceEEeCCCCcccHHHHHHHHh---cCCCccccCc
Q 019720 286 EDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLR---ILSCCPLCKQ 332 (336)
Q Consensus 286 ~~~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~---~~~tCPlCR~ 332 (336)
+...| ||-..+.++.-+.---|..-||..|+.---. ..-.||.|+.
T Consensus 18 ~~~~C-iC~~~~~~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 18 GLVTC-FCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp TCCCS-TTCCCCTTCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred CceEe-ECCCcCCCCCEEECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 44456 9988765332222122789999999964221 2346999975
No 124
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=42.05 E-value=20 Score=25.14 Aligned_cols=39 Identities=18% Similarity=0.345 Sum_probs=24.1
Q ss_pred CCccccccccccc--CCceEEeCCCCcccHHHHHHHHhcCCCccccCcCc
Q 019720 287 DPECCICLAKYKE--KEEVRKLPCSHMFHLKCVDQWLRILSCCPLCKQEL 334 (336)
Q Consensus 287 ~~~C~ICL~~f~~--~~~vr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I 334 (336)
...|.-|-+.+.+ ++++ +..-+..||.+| .+|-.|+.++
T Consensus 5 ~~~C~~C~~~I~~~~~~~~-~~a~~~~wH~~C--------F~C~~C~~~L 45 (72)
T 1x4l_A 5 SSGCAGCTNPISGLGGTKY-ISFEERQWHNDC--------FNCKKCSLSL 45 (72)
T ss_dssp SCSBTTTTBCCCCSSSCSC-EECSSCEECTTT--------CBCSSSCCBC
T ss_pred CCCCcCCCccccCCCCcce-EEECCcccCccc--------CEeccCCCcC
Confidence 4567888777775 2232 223577788777 3566676655
No 125
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=40.92 E-value=6.2 Score=31.33 Aligned_cols=21 Identities=43% Similarity=0.899 Sum_probs=13.9
Q ss_pred CCCcccHHHHHHHHhcCCCccccCcC
Q 019720 308 CSHMFHLKCVDQWLRILSCCPLCKQE 333 (336)
Q Consensus 308 C~H~FH~~CI~~WL~~~~tCPlCR~~ 333 (336)
||+.| .+=+.....||.|++.
T Consensus 73 CG~~F-----~~~~~kPsrCP~CkSe 93 (105)
T 2gmg_A 73 CGFVF-----KAEINIPSRCPKCKSE 93 (105)
T ss_dssp TCCBC-----CCCSSCCSSCSSSCCC
T ss_pred CcCee-----cccCCCCCCCcCCCCC
Confidence 78887 1112345789999974
No 126
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=40.89 E-value=8.8 Score=28.08 Aligned_cols=48 Identities=25% Similarity=0.548 Sum_probs=30.9
Q ss_pred CCCCcccccccccccCCceEEe-CCCCcccHHHHHHHHh-----cCCCccccCc
Q 019720 285 NEDPECCICLAKYKEKEEVRKL-PCSHMFHLKCVDQWLR-----ILSCCPLCKQ 332 (336)
Q Consensus 285 ~~~~~C~ICL~~f~~~~~vr~L-PC~H~FH~~CI~~WL~-----~~~tCPlCR~ 332 (336)
+.+..-+||-..+.++.....= -|.--||..|+.---. ..-.||.|+.
T Consensus 7 ~~~~~yCiC~~~~~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~ 60 (75)
T 3kqi_A 7 ATVPVYCVCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEK 60 (75)
T ss_dssp CCCCEETTTTEECCTTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHH
T ss_pred CCCeeEEECCCcCCCCCCEEEcCCCCCCEecccccccccccCCCCEEECCCCcc
Confidence 4555677999887644332221 2789999999954321 2356999975
No 127
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=39.96 E-value=25 Score=24.87 Aligned_cols=40 Identities=20% Similarity=0.597 Sum_probs=25.5
Q ss_pred CCCcccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCccccCcCc
Q 019720 286 EDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILSCCPLCKQEL 334 (336)
Q Consensus 286 ~~~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I 334 (336)
....|.-|-..+..++.+.. .-+..||.+| .+|-.|++++
T Consensus 10 ~~~~C~~C~~~I~~~~~~~~-a~~~~~H~~C--------F~C~~C~~~L 49 (77)
T 1g47_A 10 ASATCERCKGGFAPAEKIVN-SNGELYHEQC--------FVCAQCFQQF 49 (77)
T ss_dssp CCCBCSSSCCBCCSTTTCEE-ETTEEECTTT--------CCCTTTCCCC
T ss_pred CCCCchhcCCccCCCceEEE-eCccEecccc--------CeECCCCCCC
Confidence 44578888888775544322 2467788777 4566666655
No 128
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=39.65 E-value=12 Score=27.62 Aligned_cols=46 Identities=17% Similarity=0.380 Sum_probs=28.5
Q ss_pred CCcccccccccccCCceEEe--CCCCcccHHHHHHHHh---------cCCCccccCcC
Q 019720 287 DPECCICLAKYKEKEEVRKL--PCSHMFHLKCVDQWLR---------ILSCCPLCKQE 333 (336)
Q Consensus 287 ~~~C~ICL~~f~~~~~vr~L--PC~H~FH~~CI~~WL~---------~~~tCPlCR~~ 333 (336)
...| ||-....++.-+.-= -|..-||..|+.-=-+ .+-.||.|+..
T Consensus 16 ~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~ 72 (78)
T 1wew_A 16 KVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLT 72 (78)
T ss_dssp CCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHC
T ss_pred CEEe-ECCCcCCCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCcc
Confidence 3445 898875444222211 4889999999953211 24569999764
No 129
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=39.58 E-value=26 Score=24.44 Aligned_cols=34 Identities=15% Similarity=0.189 Sum_probs=15.1
Q ss_pred CCcccccccccccCCceEEeCCCCcccHHHHHHHHh
Q 019720 287 DPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLR 322 (336)
Q Consensus 287 ~~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~ 322 (336)
-..|..|-..+.. +.. ...=+..|+..|-.+-+.
T Consensus 33 CF~C~~C~~~L~~-~~~-~~~~~~~yC~~cy~~~~~ 66 (72)
T 1x61_A 33 CFVCSTCRAQLRG-QHF-YAVERRAYCEGCYVATLE 66 (72)
T ss_dssp TCBCSSSCCBCTT-SCE-EESSSCEEEHHHHHHHHH
T ss_pred CCcccccCCcCCc-CcC-EeeCCeEECHHHHHHHHc
Confidence 3455555555532 111 122345555555555443
No 130
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=39.41 E-value=36 Score=27.80 Aligned_cols=45 Identities=24% Similarity=0.452 Sum_probs=28.8
Q ss_pred CCCCcccccccccccCCceEEeCCCCcccHHHHHHHH------hc-----CCCccccCc
Q 019720 285 NEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWL------RI-----LSCCPLCKQ 332 (336)
Q Consensus 285 ~~~~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL------~~-----~~tCPlCR~ 332 (336)
..+..|.||-+. |+-+--=.|-..||.+||+.=+ ++ .=.|++|+.
T Consensus 55 g~~~~C~vC~dG---G~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 55 GMDEQCRWCAEG---GNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp SCBSSCTTTCCC---SEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCCCcCeecCCC---CeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 456679999843 3211111278999999999752 22 135999965
No 131
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=38.82 E-value=25 Score=25.31 Aligned_cols=39 Identities=23% Similarity=0.497 Sum_probs=26.4
Q ss_pred CcccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCccccCcCcC
Q 019720 288 PECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILSCCPLCKQELE 335 (336)
Q Consensus 288 ~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~ 335 (336)
..|.-|-..+..++.+. ..=+..||.+| .+|-.|++++.
T Consensus 16 ~~C~~C~~~I~~~~~~~-~a~~~~~H~~C--------F~C~~C~~~L~ 54 (82)
T 1x63_A 16 PKCKGCFKAIVAGDQNV-EYKGTVWHKDC--------FTCSNCKQVIG 54 (82)
T ss_dssp CBCSSSCCBCCSSSCEE-ECSSCEEETTT--------CCCSSSCCCCT
T ss_pred CcCccCCcccccCceEE-EECcccccccc--------CchhhCCCccC
Confidence 57888888887665432 23477888877 45777776653
No 132
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=38.37 E-value=19 Score=26.18 Aligned_cols=33 Identities=24% Similarity=0.674 Sum_probs=26.4
Q ss_pred CCCCCcccccccccccCCceEEeCC-CCcccHHHHHHH
Q 019720 284 ANEDPECCICLAKYKEKEEVRKLPC-SHMFHLKCVDQW 320 (336)
Q Consensus 284 ~~~~~~C~ICL~~f~~~~~vr~LPC-~H~FH~~CI~~W 320 (336)
.++..-|.||.++ ..++-+.| +-.||..|..+-
T Consensus 5 ~ee~pWC~ICneD----AtlrC~gCdgDLYC~rC~rE~ 38 (67)
T 2d8v_A 5 SSGLPWCCICNED----ATLRCAGCDGDLYCARCFREG 38 (67)
T ss_dssp CCCCSSCTTTCSC----CCEEETTTTSEEECSSHHHHH
T ss_pred CcCCCeeEEeCCC----CeEEecCCCCceehHHHHHHH
Confidence 4677889999866 55788889 789999997764
No 133
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=37.95 E-value=7.5 Score=34.98 Aligned_cols=46 Identities=24% Similarity=0.617 Sum_probs=25.0
Q ss_pred CcccccccccccCCceEEeCCCCcccHHHHHHHHhcC-----CCccccCcC
Q 019720 288 PECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRIL-----SCCPLCKQE 333 (336)
Q Consensus 288 ~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~~~-----~tCPlCR~~ 333 (336)
..|.+|...=..++-+.-=.|...||..|++.=|... =.||.|+..
T Consensus 175 c~C~vC~~~~~~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~~ 225 (226)
T 3ask_A 175 CACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 225 (226)
T ss_dssp TSCSSSCCCCC--CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC--
T ss_pred CCCcCCCCCCCCCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcCc
Confidence 3688887653233222111288999999999544331 259999753
No 134
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=37.50 E-value=22 Score=26.28 Aligned_cols=39 Identities=18% Similarity=0.393 Sum_probs=25.8
Q ss_pred CCCcccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCccccCcCcC
Q 019720 286 EDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILSCCPLCKQELE 335 (336)
Q Consensus 286 ~~~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~ 335 (336)
....|.-|-..+. ++. +..-+..||.+| .+|-.|++++.
T Consensus 24 ~~~~C~~C~~~I~-~~~--v~a~~~~~H~~C--------F~C~~C~~~L~ 62 (90)
T 2dar_A 24 RTPMCAHCNQVIR-GPF--LVALGKSWHPEE--------FNCAHCKNTMA 62 (90)
T ss_dssp CCCBBSSSCCBCC-SCE--EEETTEEECTTT--------CBCSSSCCBCS
T ss_pred CCCCCccCCCEec-ceE--EEECCccccccC--------CccCCCCCCCC
Confidence 3457888888875 332 234578888887 46777777653
No 135
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=37.38 E-value=4.2 Score=29.30 Aligned_cols=45 Identities=24% Similarity=0.445 Sum_probs=26.8
Q ss_pred CCcccccccccccCCceEEe---CCCCcccHHHHHHHH---h-----cCCCccccCc
Q 019720 287 DPECCICLAKYKEKEEVRKL---PCSHMFHLKCVDQWL---R-----ILSCCPLCKQ 332 (336)
Q Consensus 287 ~~~C~ICL~~f~~~~~vr~L---PC~H~FH~~CI~~WL---~-----~~~tCPlCR~ 332 (336)
+..-+||-...+++. ...- -|..-||..|+.--- + .+-.||.||.
T Consensus 9 ~~v~C~C~~~~~~g~-mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~ 64 (68)
T 2rsd_A 9 AKVRCICSSTMVNDS-MIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRL 64 (68)
T ss_dssp CEECCTTCCCSCCSC-EEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHH
T ss_pred CCEEeECCCCcCCCC-EEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccC
Confidence 334458977666553 2222 177789999984210 0 1346999974
No 136
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=37.21 E-value=23 Score=24.69 Aligned_cols=38 Identities=18% Similarity=0.379 Sum_probs=21.6
Q ss_pred CcccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCccccCcCc
Q 019720 288 PECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILSCCPLCKQEL 334 (336)
Q Consensus 288 ~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I 334 (336)
..|.-|-..+.+++.+.. .-+..||.+| .+|-.|++++
T Consensus 6 ~~C~~C~~~I~~~~~~~~-a~~~~~H~~C--------F~C~~C~~~L 43 (72)
T 1x4k_A 6 SGCQECKKTIMPGTRKME-YKGSSWHETC--------FICHRCQQPI 43 (72)
T ss_dssp CCBSSSCCCCCSSSCEEE-ETTEEEETTT--------TCCSSSCCCC
T ss_pred CCCccCCCcccCCceEEE-ECcCeecccC--------CcccccCCcc
Confidence 357777777666543221 2456777666 3466665554
No 137
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.88 E-value=32 Score=23.84 Aligned_cols=26 Identities=15% Similarity=0.333 Sum_probs=13.5
Q ss_pred CcccccccccccCCceEEeCCCCcccHHH
Q 019720 288 PECCICLAKYKEKEEVRKLPCSHMFHLKC 316 (336)
Q Consensus 288 ~~C~ICL~~f~~~~~vr~LPC~H~FH~~C 316 (336)
..|.-|-..+.+. . +..-+..||.+|
T Consensus 6 ~~C~~C~~~I~~~-~--~~a~~~~~H~~C 31 (70)
T 2d8z_A 6 SGCVQCKKPITTG-G--VTYREQPWHKEC 31 (70)
T ss_dssp CBCSSSCCBCCSS-E--EESSSSEEETTT
T ss_pred CCCcccCCeeccc-e--EEECccccCCCC
Confidence 3566666665532 1 223456666665
No 138
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.53 E-value=28 Score=24.23 Aligned_cols=38 Identities=21% Similarity=0.391 Sum_probs=21.2
Q ss_pred CcccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCccccCcCc
Q 019720 288 PECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILSCCPLCKQEL 334 (336)
Q Consensus 288 ~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I 334 (336)
..|.-|-..+.+++++ +..-+..||.+| .+|-.|++++
T Consensus 6 ~~C~~C~~~I~~~~~~-~~a~~~~~H~~C--------F~C~~C~~~L 43 (72)
T 1wyh_A 6 SGCSACGETVMPGSRK-LEYGGQTWHEHC--------FLCSGCEQPL 43 (72)
T ss_dssp CBCSSSCCBCCSSSCE-ECSTTCCEETTT--------CBCTTTCCBT
T ss_pred CCCccCCCccccCccE-EEECccccCccc--------CeECCCCCcC
Confidence 4577777766654332 223466777666 3455665554
No 139
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.36 E-value=29 Score=25.05 Aligned_cols=37 Identities=22% Similarity=0.383 Sum_probs=21.3
Q ss_pred CCcccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCccccCcCc
Q 019720 287 DPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILSCCPLCKQEL 334 (336)
Q Consensus 287 ~~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I 334 (336)
...|.-|-..+. ++.+ ..-+..||.+| .+|-.|+.++
T Consensus 15 ~~~C~~C~~~I~-~~~v--~a~~~~~H~~C--------F~C~~C~~~L 51 (79)
T 2cor_A 15 KYICQKCHAIID-EQPL--IFKNDPYHPDH--------FNCANCGKEL 51 (79)
T ss_dssp CCBCTTTCCBCC-SCCC--CCSSSCCCTTT--------SBCSSSCCBC
T ss_pred CCCCccCCCEec-ceEE--EECcceeCCCC--------CEeCCCCCcc
Confidence 456777777666 3222 23466677666 3566666655
No 140
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=35.39 E-value=15 Score=30.26 Aligned_cols=34 Identities=18% Similarity=0.289 Sum_probs=24.3
Q ss_pred CCCCcccccccccc--cCCceEEeCCCCcccHHHHH
Q 019720 285 NEDPECCICLAKYK--EKEEVRKLPCSHMFHLKCVD 318 (336)
Q Consensus 285 ~~~~~C~ICL~~f~--~~~~vr~LPC~H~FH~~CI~ 318 (336)
.++..|.+|...|. .+....-..|+|.+|..|=.
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~ 88 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGV 88 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEE
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccCC
Confidence 56789999999993 23333333489999999844
No 141
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.35 E-value=24 Score=25.15 Aligned_cols=38 Identities=18% Similarity=0.393 Sum_probs=24.7
Q ss_pred Cccccccccccc--CCceEEeCCCCcccHHHHHHHHhcCCCccccCcCc
Q 019720 288 PECCICLAKYKE--KEEVRKLPCSHMFHLKCVDQWLRILSCCPLCKQEL 334 (336)
Q Consensus 288 ~~C~ICL~~f~~--~~~vr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I 334 (336)
..|.-|-..+.+ +++. +..-+..||.+| .+|-.|+.++
T Consensus 6 ~~C~~C~~~I~~~g~~~~-~~a~~~~wH~~C--------F~C~~C~~~L 45 (76)
T 1x68_A 6 SGCVACSKPISGLTGAKF-ICFQDSQWHSEC--------FNCGKCSVSL 45 (76)
T ss_dssp CCCTTTCCCCCTTTTCCE-EEETTEEEEGGG--------CBCTTTCCBC
T ss_pred CCCccCCCcccCCCCcee-EEECCcccCccc--------CChhhCCCcC
Confidence 468888888775 3232 233577888888 4566676655
No 142
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=34.69 E-value=5.3 Score=31.35 Aligned_cols=44 Identities=16% Similarity=0.353 Sum_probs=27.0
Q ss_pred cccccccccccCCceEEeCCCCcccHHHHHHHHhc----CCCccccCc
Q 019720 289 ECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRI----LSCCPLCKQ 332 (336)
Q Consensus 289 ~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~~----~~tCPlCR~ 332 (336)
.|.+|-..-++..-+.--.|...||..|++.=++. .-.||.|+.
T Consensus 56 ~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~ 103 (111)
T 2ysm_A 56 VCQNCKQSGEDSKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRI 103 (111)
T ss_dssp CCTTTCCCSCCTTEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHC
T ss_pred cccccCccCCCCCeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcC
Confidence 57777765333222222227899999999865543 235888865
No 143
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=34.34 E-value=23 Score=27.97 Aligned_cols=33 Identities=27% Similarity=0.422 Sum_probs=21.4
Q ss_pred Cccccccccccc------CCc-eEEeCCCCcccHHHHHHH
Q 019720 288 PECCICLAKYKE------KEE-VRKLPCSHMFHLKCVDQW 320 (336)
Q Consensus 288 ~~C~ICL~~f~~------~~~-vr~LPC~H~FH~~CI~~W 320 (336)
..|.+|+..-.. +++ +.--.|+..||..|++..
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~ 41 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFT 41 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCCh
Confidence 368999875421 122 222338999999999765
No 144
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.32 E-value=23 Score=24.63 Aligned_cols=37 Identities=22% Similarity=0.520 Sum_probs=19.0
Q ss_pred CCcccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCccccCcCc
Q 019720 287 DPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILSCCPLCKQEL 334 (336)
Q Consensus 287 ~~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I 334 (336)
...|.-|-+.+.+ +.+ ..-+..||.+|. +|-.|+.++
T Consensus 5 ~~~C~~C~~~I~~-~~~--~a~~~~~H~~CF--------~C~~C~~~L 41 (70)
T 2d8x_A 5 SSGCHQCGEFIIG-RVI--KAMNNSWHPECF--------RCDLCQEVL 41 (70)
T ss_dssp SSBCSSSCCBCCS-CCE--EETTEEECTTTS--------BCSSSCCBC
T ss_pred CCcCccCCCEecc-eEE--EECcccccccCC--------EeCCCCCcC
Confidence 3456666666552 222 223566666662 455555544
No 145
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=33.52 E-value=7.9 Score=27.51 Aligned_cols=41 Identities=32% Similarity=0.814 Sum_probs=25.7
Q ss_pred CCcccccccccccCCceEEeCC-----C-CcccHHHHHHHHhc----CCCccccCcC
Q 019720 287 DPECCICLAKYKEKEEVRKLPC-----S-HMFHLKCVDQWLRI----LSCCPLCKQE 333 (336)
Q Consensus 287 ~~~C~ICL~~f~~~~~vr~LPC-----~-H~FH~~CI~~WL~~----~~tCPlCR~~ 333 (336)
+...+||-... .++ .+-| . .-||..|+. |.. +-.||.|+..
T Consensus 10 e~~yC~C~~~~-~g~---MI~CD~c~C~~~WfH~~Cvg--l~~~p~~~w~Cp~C~~~ 60 (62)
T 2g6q_A 10 EPTYCLCNQVS-YGE---MIGCDNEQCPIEWFHFSCVS--LTYKPKGKWYCPKCRGD 60 (62)
T ss_dssp CCEETTTTEEC-CSE---EEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHTC
T ss_pred CCcEEECCCCC-CCC---eeeeeCCCCCcccEecccCC--cCcCCCCCEECcCcccC
Confidence 34455998763 342 3333 3 789999997 333 3459999763
No 146
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=32.99 E-value=47 Score=24.60 Aligned_cols=36 Identities=14% Similarity=0.338 Sum_probs=25.2
Q ss_pred CCCCcccccccccccCCce-EEeCCCCcccHHHHHHH
Q 019720 285 NEDPECCICLAKYKEKEEV-RKLPCSHMFHLKCVDQW 320 (336)
Q Consensus 285 ~~~~~C~ICL~~f~~~~~v-r~LPC~H~FH~~CI~~W 320 (336)
.+...|.+|-..|..-..- .--.||++|+.+|....
T Consensus 19 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 19 EDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp TTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCE
T ss_pred CCCCCCcCcCCccccchhcccccCCCcEEChHHhCCe
Confidence 4566899999999764211 11128999999997664
No 147
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=31.57 E-value=5.8 Score=25.10 Aligned_cols=17 Identities=24% Similarity=0.446 Sum_probs=12.3
Q ss_pred CCCcccccccccccCCc
Q 019720 286 EDPECCICLAKYKEKEE 302 (336)
Q Consensus 286 ~~~~C~ICL~~f~~~~~ 302 (336)
+...|+||+.++...+.
T Consensus 4 EGFiCP~C~~~l~s~~~ 20 (34)
T 3mjh_B 4 EGFICPQCMKSLGSADE 20 (34)
T ss_dssp EEEECTTTCCEESSHHH
T ss_pred cccCCcHHHHHcCCHHH
Confidence 45788899888776644
No 148
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=31.17 E-value=14 Score=26.71 Aligned_cols=38 Identities=29% Similarity=0.592 Sum_probs=21.8
Q ss_pred CCcccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCccccCcCc
Q 019720 287 DPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILSCCPLCKQEL 334 (336)
Q Consensus 287 ~~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I 334 (336)
...|..|-+.+.+++.+. .-+..||.+|. +|-.|++++
T Consensus 7 ~~~C~~C~~~I~~~~~~~--a~~~~~H~~CF--------~C~~C~~~L 44 (81)
T 1a7i_A 7 GNKCGACGRTVYHAEEVQ--CDGRSFHRCCF--------LCMVCRKNL 44 (81)
T ss_dssp -CBCSSSCCBCSSTTEEE--ETTEEEESSSE--------ECSSSCCEE
T ss_pred CCcCcCcCccccCceeEE--eCCcccccccC--------ccCCCCCCC
Confidence 346777777776555432 24667776663 355555544
No 149
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=30.32 E-value=23 Score=29.78 Aligned_cols=47 Identities=21% Similarity=0.444 Sum_probs=30.2
Q ss_pred CCCCcccccccccc--cCCceEEeCCCCcccHHHHHHHHhcCC--CccccCc
Q 019720 285 NEDPECCICLAKYK--EKEEVRKLPCSHMFHLKCVDQWLRILS--CCPLCKQ 332 (336)
Q Consensus 285 ~~~~~C~ICL~~f~--~~~~vr~LPC~H~FH~~CI~~WL~~~~--tCPlCR~ 332 (336)
.++..|.+|...|. .+....-..|+|.+|..|= .|+..+. .|-+|++
T Consensus 66 ~~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~-~~~~~~~~W~C~vC~k 116 (153)
T 2zet_C 66 LNETHCARCLQPYRLLLNSRRQCLECSLFVCKSCS-HAHPEEQGWLCDPCHL 116 (153)
T ss_dssp GGGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGE-ECCSSSSSCEEHHHHH
T ss_pred CCCccchhhcCccccccCCCCcCCCCCchhhcccc-cccCCCCcEeeHHHHH
Confidence 36789999999764 3433444449999999996 2333222 2666653
No 150
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=29.86 E-value=45 Score=25.10 Aligned_cols=36 Identities=17% Similarity=0.336 Sum_probs=24.6
Q ss_pred CCCCcccccccccccCCce-EEeCCCCcccHHHHHHH
Q 019720 285 NEDPECCICLAKYKEKEEV-RKLPCSHMFHLKCVDQW 320 (336)
Q Consensus 285 ~~~~~C~ICL~~f~~~~~v-r~LPC~H~FH~~CI~~W 320 (336)
.+...|.+|...|..-..- .--.||++|+..|....
T Consensus 7 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~ 43 (88)
T 1wfk_A 7 GMESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFS 43 (88)
T ss_dssp CCCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEE
T ss_pred CcCCCCcCcCCcccCccccccCCCCCCEEChhHcCCc
Confidence 4566899999998764211 11128999999997653
No 151
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.52 E-value=29 Score=24.07 Aligned_cols=26 Identities=15% Similarity=0.409 Sum_probs=12.2
Q ss_pred CcccccccccccCCceEEeCCCCcccHHH
Q 019720 288 PECCICLAKYKEKEEVRKLPCSHMFHLKC 316 (336)
Q Consensus 288 ~~C~ICL~~f~~~~~vr~LPC~H~FH~~C 316 (336)
..|.-|-+.+.+ +.+. .-+..||.+|
T Consensus 6 ~~C~~C~~~I~~-~~~~--a~~~~~H~~C 31 (69)
T 2cur_A 6 SGCVKCNKAITS-GGIT--YQDQPWHADC 31 (69)
T ss_dssp CCCSSSCCCCCT-TCEE--ETTEEECTTT
T ss_pred CCCcccCCEeCc-ceEE--ECccccccCc
Confidence 345555555542 2222 2345555555
No 152
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=29.48 E-value=31 Score=23.63 Aligned_cols=37 Identities=16% Similarity=0.408 Sum_probs=23.2
Q ss_pred CCcccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCccccCcCc
Q 019720 287 DPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILSCCPLCKQEL 334 (336)
Q Consensus 287 ~~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I 334 (336)
...|.-|-..+. ++ .+..-+..||.+| .+|-.|+.++
T Consensus 5 ~~~C~~C~~~I~-~~--~~~a~~~~~H~~C--------F~C~~C~~~L 41 (66)
T 1nyp_A 5 VPICGACRRPIE-GR--VVNAMGKQWHVEH--------FVCAKCEKPF 41 (66)
T ss_dssp CCEETTTTEECC-SC--EECCTTSBEETTT--------CBCTTTCCBC
T ss_pred CCCCcccCCEec-ce--EEEECccccccCc--------CEECCCCCCC
Confidence 346778877776 33 2333567788777 4566776655
No 153
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=28.98 E-value=37 Score=23.36 Aligned_cols=40 Identities=20% Similarity=0.621 Sum_probs=28.1
Q ss_pred CCCcccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCccccCcCc
Q 019720 286 EDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILSCCPLCKQEL 334 (336)
Q Consensus 286 ~~~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I 334 (336)
....|.-|-..+..++.+.. .=+..||.+|. +|-.|++++
T Consensus 10 ~~~~C~~C~~~i~~~e~~~~-~~~~~~H~~CF--------~C~~C~~~L 49 (72)
T 3f6q_B 10 ASATCERCKGGFAPAEKIVN-SNGELYHEQCF--------VCAQCFQQF 49 (72)
T ss_dssp TTCBCTTTCCBCCTTCEEEE-ETTEEEETTTS--------SCTTTCCCC
T ss_pred CCccchhcCccccCCceEEE-eCcCeeCcCCC--------cccCCCCCC
Confidence 34579999998887765432 35778898885 577777665
No 154
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=27.70 E-value=20 Score=28.11 Aligned_cols=41 Identities=22% Similarity=0.562 Sum_probs=25.9
Q ss_pred CCcccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCccccCcCcC
Q 019720 287 DPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILSCCPLCKQELE 335 (336)
Q Consensus 287 ~~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~ 335 (336)
+..|++|..+.+.... +.++..|=. =++..+.||-|.++++
T Consensus 32 ~~~CP~Cq~eL~~~g~-------~~hC~~C~~-~f~~~a~CPdC~q~Le 72 (101)
T 2jne_A 32 ELHCPQCQHVLDQDNG-------HARCRSCGE-FIEMKALCPDCHQPLQ 72 (101)
T ss_dssp CCBCSSSCSBEEEETT-------EEEETTTCC-EEEEEEECTTTCSBCE
T ss_pred cccCccCCCcceecCC-------EEECccccc-hhhccccCcchhhHHH
Confidence 3789999988765322 222333422 1355678999999886
No 155
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=27.47 E-value=41 Score=24.86 Aligned_cols=36 Identities=19% Similarity=0.463 Sum_probs=24.7
Q ss_pred CCCCcccccccccccCCceE-EeCCCCcccHHHHHHH
Q 019720 285 NEDPECCICLAKYKEKEEVR-KLPCSHMFHLKCVDQW 320 (336)
Q Consensus 285 ~~~~~C~ICL~~f~~~~~vr-~LPC~H~FH~~CI~~W 320 (336)
.+...|.+|...|..-..-. --.||++|+..|....
T Consensus 17 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 53 (82)
T 2yw8_A 17 DEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNE 53 (82)
T ss_dssp CCCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEE
T ss_pred ccCCcccCcCCcccCccccccCCCCCCEEChHHhCCe
Confidence 35568999999997542111 1128999999997654
No 156
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=26.73 E-value=50 Score=26.15 Aligned_cols=38 Identities=21% Similarity=0.484 Sum_probs=28.8
Q ss_pred CCcccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCccccCcCc
Q 019720 287 DPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILSCCPLCKQEL 334 (336)
Q Consensus 287 ~~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I 334 (336)
...|.-|-..+.+...+. .-+..||.+| .+|-.|+.++
T Consensus 61 ~~~C~~C~~~I~~~~~v~--a~~~~wH~~C--------F~C~~C~~~L 98 (123)
T 2l4z_A 61 WKRCAGCGGKIADRFLLY--AMDSYWHSRC--------LKCSSCQAQL 98 (123)
T ss_dssp CSBBSSSSSBCCSSSEEE--ETTEEEETTT--------SBCTTTCCBG
T ss_pred CCcCcCCCCCcCCcEEEE--eCCcEEcccc--------cCcCcCCCcc
Confidence 468999999988654333 3688999988 5688888776
No 157
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=26.52 E-value=6.4 Score=31.27 Aligned_cols=46 Identities=17% Similarity=0.417 Sum_probs=28.9
Q ss_pred CcccccccccccCCceEEeCCCCcccHHHHHHHHhcC----CCccccCcC
Q 019720 288 PECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRIL----SCCPLCKQE 333 (336)
Q Consensus 288 ~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~~~----~tCPlCR~~ 333 (336)
..|.||...-.+++-+.--.|...||..|++.=|... =.||.|+..
T Consensus 59 ~~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~~ 108 (114)
T 2kwj_A 59 KSCILCGTSENDDQLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWEL 108 (114)
T ss_dssp CCCTTTTCCTTTTTEEECSSSCCEEETTTSSSCCSSCCSSCCCCHHHHHH
T ss_pred CccCcccccCCCCceEEcCCCCccccccccCCCccCCCCCCeECccccch
Confidence 3688887764444322222278999999998644332 249988654
No 158
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=25.61 E-value=52 Score=24.77 Aligned_cols=36 Identities=22% Similarity=0.497 Sum_probs=25.2
Q ss_pred CCCcccccccccccCCc-eEEeCCCCcccHHHHHHHH
Q 019720 286 EDPECCICLAKYKEKEE-VRKLPCSHMFHLKCVDQWL 321 (336)
Q Consensus 286 ~~~~C~ICL~~f~~~~~-vr~LPC~H~FH~~CI~~WL 321 (336)
+...|.+|...|..-.. -.--.||++|+..|.....
T Consensus 19 ~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~ 55 (90)
T 3t7l_A 19 EAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKC 55 (90)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEE
T ss_pred cCCcCcCCCCcccchhhCccccCCCCEECCcccCCee
Confidence 45679999999875421 1122389999999987653
No 159
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=25.04 E-value=22 Score=21.44 Aligned_cols=28 Identities=25% Similarity=0.529 Sum_probs=20.9
Q ss_pred CcccccccccccCCceEEeCCCCcccHHHH
Q 019720 288 PECCICLAKYKEKEEVRKLPCSHMFHLKCV 317 (336)
Q Consensus 288 ~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI 317 (336)
..|+.|-...-..+.+. .=+..||+.|.
T Consensus 4 ~~C~~C~k~Vy~~Ek~~--~~g~~~Hk~CF 31 (31)
T 1zfo_A 4 PNCARCGKIVYPTEKVN--CLDKFWHKACF 31 (31)
T ss_dssp CBCSSSCSBCCGGGCCC--SSSSCCCGGGC
T ss_pred CcCCccCCEEecceeEE--ECCeEecccCC
Confidence 36999988887775543 35799999883
No 160
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=24.82 E-value=30 Score=27.20 Aligned_cols=37 Identities=14% Similarity=0.259 Sum_probs=20.6
Q ss_pred CCCCcccccccccccCCceEEeCCCCcccHHHHHHHHh
Q 019720 285 NEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLR 322 (336)
Q Consensus 285 ~~~~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~ 322 (336)
.+-..|..|-..+..++.... .=+..||..|..+.+.
T Consensus 34 ~~CF~C~~C~~~L~~g~~f~~-~~g~~yC~~cy~~~~~ 70 (123)
T 2l3k_A 34 LECFKCAACQKHFSVGDRYLL-INSDIVCEQDIYEWTK 70 (123)
T ss_dssp TTTCBCTTTCCBCCTTCEEEE-CSSSEEEGGGHHHHHH
T ss_pred cccCccccCCCCCCCCCcEEe-eCCEEEcHHHhHHHhc
Confidence 345567777666655443322 2356666666666543
No 161
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=23.89 E-value=17 Score=27.95 Aligned_cols=39 Identities=28% Similarity=0.650 Sum_probs=23.8
Q ss_pred CcccccccccccCCceEEeCC---C---CcccHHHHHHHHhc----CCCccc-cCc
Q 019720 288 PECCICLAKYKEKEEVRKLPC---S---HMFHLKCVDQWLRI----LSCCPL-CKQ 332 (336)
Q Consensus 288 ~~C~ICL~~f~~~~~vr~LPC---~---H~FH~~CI~~WL~~----~~tCPl-CR~ 332 (336)
...+||-.... ++ .+-| . .-||..|+. |.. +-.||. |++
T Consensus 26 ~~yCiC~~~~~-g~---MI~CD~c~C~~eWfH~~CVg--l~~~p~~~W~Cp~cC~~ 75 (90)
T 2jmi_A 26 EVYCFCRNVSY-GP---MVACDNPACPFEWFHYGCVG--LKQAPKGKWYCSKDCKE 75 (90)
T ss_dssp SCCSTTTCCCS-SS---EECCCSSSCSCSCEETTTSS--CSSCTTSCCCSSHHHHH
T ss_pred CcEEEeCCCCC-CC---EEEecCCCCccccCcCccCC--CCcCCCCCccCChhhcc
Confidence 34449987532 32 3334 3 579999996 332 335999 864
No 162
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=23.35 E-value=53 Score=23.65 Aligned_cols=34 Identities=18% Similarity=0.346 Sum_probs=23.1
Q ss_pred CCcccccccccccCCc-eEEeCCCCcccHHHHHHH
Q 019720 287 DPECCICLAKYKEKEE-VRKLPCSHMFHLKCVDQW 320 (336)
Q Consensus 287 ~~~C~ICL~~f~~~~~-vr~LPC~H~FH~~CI~~W 320 (336)
+..|.+|...|..-.. -.--.||++|+..|-...
T Consensus 11 ~~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~~ 45 (73)
T 1vfy_A 11 SDACMICSKKFSLLNRKHHCRSCGGVFCQEHSSNS 45 (73)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECGGGSCEE
T ss_pred CCcccCCCCccCCccccccCCCCCEEEcccccCCe
Confidence 3589999999875421 111128999999997543
No 163
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.25 E-value=30 Score=25.03 Aligned_cols=42 Identities=31% Similarity=0.635 Sum_probs=25.2
Q ss_pred CCCcccccccccccCCceEEeCC---C---CcccHHHHHHHHhc----CCCccccCcC
Q 019720 286 EDPECCICLAKYKEKEEVRKLPC---S---HMFHLKCVDQWLRI----LSCCPLCKQE 333 (336)
Q Consensus 286 ~~~~C~ICL~~f~~~~~vr~LPC---~---H~FH~~CI~~WL~~----~~tCPlCR~~ 333 (336)
++..-+||-... +++ .+-| . .-||.+|+. |.. +-.||.|+..
T Consensus 4 ~~~~yC~C~~~~-~g~---MI~CD~cdC~~~WfH~~Cvg--l~~~p~~~w~Cp~C~~~ 55 (70)
T 1x4i_A 4 GSSGYCICNQVS-YGE---MVGCDNQDCPIEWFHYGCVG--LTEAPKGKWYCPQCTAA 55 (70)
T ss_dssp SCCCCSTTSCCC-CSS---EECCSCTTCSCCCEEHHHHT--CSSCCSSCCCCHHHHHH
T ss_pred CCCeEEEcCCCC-CCC---EeEeCCCCCCccCCcccccc--cCcCCCCCEECCCCCcc
Confidence 344455787763 342 3334 2 689999997 332 2359999754
No 164
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=22.91 E-value=17 Score=24.39 Aligned_cols=8 Identities=50% Similarity=1.726 Sum_probs=6.3
Q ss_pred CccccCcC
Q 019720 326 CCPLCKQE 333 (336)
Q Consensus 326 tCPlCR~~ 333 (336)
.||+|..+
T Consensus 32 ~CP~Cg~~ 39 (46)
T 6rxn_A 32 CCPVCGVS 39 (46)
T ss_dssp BCTTTCCB
T ss_pred cCcCCCCc
Confidence 79999764
No 165
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.90 E-value=41 Score=24.07 Aligned_cols=33 Identities=12% Similarity=0.305 Sum_probs=13.2
Q ss_pred CCcccccccccccCCceEEeCCCCcccHHHHHH
Q 019720 287 DPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQ 319 (336)
Q Consensus 287 ~~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~ 319 (336)
-..|..|-..+.+++......=+..||..|-.+
T Consensus 41 CF~C~~C~~~L~~g~~f~~~~~~~~~C~~c~~~ 73 (81)
T 1x6a_A 41 CFACMSCKVIIEDGDAYALVQHATLYCGKCHNE 73 (81)
T ss_dssp SCBCTTTCCBCCTTSCEEECSSSCEEEHHHHHH
T ss_pred cCCccCCCCccCCCCcEEEeeCCEEECHHHHHH
Confidence 344555554444333221112234444444443
No 166
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.79 E-value=58 Score=22.98 Aligned_cols=33 Identities=27% Similarity=0.473 Sum_probs=14.1
Q ss_pred CCCcccccccccccCCceEEeCCCCcccHHHHHH
Q 019720 286 EDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQ 319 (336)
Q Consensus 286 ~~~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~ 319 (336)
+-..|..|-..+.+++... ..=+..||..|-.+
T Consensus 30 ~CF~C~~C~~~L~~~~~f~-~~~~~~yC~~C~~~ 62 (73)
T 1wig_A 30 SCALCVRCGQMFAEGEEMY-LQGSSIWHPACRQA 62 (73)
T ss_dssp TTSCCSSSCCCCCSSCCCE-EETTEEECTTHHHH
T ss_pred CcCEeCCCCCCCCCCCeeE-eeCCEEEChHHChH
Confidence 3445555555554332221 11234455555443
No 167
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=22.53 E-value=15 Score=24.86 Aligned_cols=45 Identities=18% Similarity=0.517 Sum_probs=27.2
Q ss_pred CcccccccccccCCceEEeCCCCcccHHHHHHHH---hcCCCccccCc
Q 019720 288 PECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWL---RILSCCPLCKQ 332 (336)
Q Consensus 288 ~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL---~~~~tCPlCR~ 332 (336)
..=+||-..+.++.-+.--.|+.-||..|+.--- ..+-.||.|+.
T Consensus 4 ~~~C~C~~~~~~~~MI~Cd~C~~W~H~~Cvgi~~~~~~~~~~C~~C~~ 51 (52)
T 3o7a_A 4 LVTCFCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 51 (52)
T ss_dssp CBCSTTCCBCTTCCEEECTTTCCEEETTTTTCCGGGCCSSCCCHHHHT
T ss_pred CeEEEeCCcCCCCCEEEcCCCCccccccccCCCcccCCCcEECcCCCC
Confidence 3446888766533222212278999999996322 22456999975
No 168
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=22.14 E-value=22 Score=35.41 Aligned_cols=48 Identities=27% Similarity=0.526 Sum_probs=30.5
Q ss_pred CCCCcccccccccccCCceEEe-CCCCcccHHHHHHHHh-----cCCCccccCc
Q 019720 285 NEDPECCICLAKYKEKEEVRKL-PCSHMFHLKCVDQWLR-----ILSCCPLCKQ 332 (336)
Q Consensus 285 ~~~~~C~ICL~~f~~~~~vr~L-PC~H~FH~~CI~~WL~-----~~~tCPlCR~ 332 (336)
+.+..-|||...++++.....- -|.--||..|+.-=-. .+-.||.|+.
T Consensus 34 ~~~~~yC~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~ 87 (488)
T 3kv5_D 34 PPPPVYCVCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAV 87 (488)
T ss_dssp CCCCEETTTTEECCTTSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHHHHH
T ss_pred CCCCeEEeCCCcCCCCCCeEEccCCCCceeeeecCcCcccccCCCEEECCCCcC
Confidence 3455667999887644332222 2889999999953211 1346999974
No 169
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=22.10 E-value=19 Score=21.70 Aligned_cols=10 Identities=40% Similarity=1.248 Sum_probs=6.7
Q ss_pred CCccccCcCc
Q 019720 325 SCCPLCKQEL 334 (336)
Q Consensus 325 ~tCPlCR~~I 334 (336)
.+||+|+...
T Consensus 4 ~~CpvCk~q~ 13 (28)
T 2jvx_A 4 FCCPKCQYQA 13 (28)
T ss_dssp EECTTSSCEE
T ss_pred ccCccccccC
Confidence 4688887654
No 170
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=22.02 E-value=35 Score=26.80 Aligned_cols=13 Identities=31% Similarity=0.807 Sum_probs=10.7
Q ss_pred cccHHHHHHHHhc
Q 019720 311 MFHLKCVDQWLRI 323 (336)
Q Consensus 311 ~FH~~CI~~WL~~ 323 (336)
-||+.|+.+|.+.
T Consensus 42 GFCRNCLskWy~~ 54 (105)
T 2o35_A 42 GFCRNCLSNWYRE 54 (105)
T ss_dssp SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4899999999853
No 171
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=21.76 E-value=35 Score=26.71 Aligned_cols=12 Identities=33% Similarity=0.897 Sum_probs=10.4
Q ss_pred cccHHHHHHHHh
Q 019720 311 MFHLKCVDQWLR 322 (336)
Q Consensus 311 ~FH~~CI~~WL~ 322 (336)
-||+.|+.+|+.
T Consensus 41 GFCRNCLskWy~ 52 (104)
T 3fyb_A 41 DFCRNCLAKWLM 52 (104)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 489999999986
No 172
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.64 E-value=54 Score=23.27 Aligned_cols=36 Identities=22% Similarity=0.548 Sum_probs=18.9
Q ss_pred CcccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCccccCcCc
Q 019720 288 PECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILSCCPLCKQEL 334 (336)
Q Consensus 288 ~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I 334 (336)
..|.-|-..+.+. .+..=+..||.+| .+|-.|++++
T Consensus 16 ~~C~~C~~~I~~~---~v~a~~~~~H~~C--------F~C~~C~~~L 51 (80)
T 2cuq_A 16 PRCARCSKTLTQG---GVTYRDQPWHREC--------LVCTGCQTPL 51 (80)
T ss_dssp CCCTTTCCCCCSC---CEESSSSEECTTT--------CBCSSSCCBC
T ss_pred CcCCCCCCEecCc---EEEECCchhhhhh--------CCcccCCCcC
Confidence 3566666665442 1223456666666 3455555544
No 173
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.62 E-value=44 Score=23.95 Aligned_cols=36 Identities=22% Similarity=0.580 Sum_probs=22.5
Q ss_pred CcccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCccccCcCc
Q 019720 288 PECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILSCCPLCKQEL 334 (336)
Q Consensus 288 ~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I 334 (336)
..|.-|-..+. ++.+. .-+..||.+| .+|-.|++++
T Consensus 16 ~~C~~C~~~I~-~~~v~--a~~~~wH~~C--------F~C~~C~~~L 51 (81)
T 1v6g_A 16 TRCFSCDQFIE-GEVVS--ALGKTYHPDC--------FVCAVCRLPF 51 (81)
T ss_dssp CBCTTTCCBCC-SCCEE--ETTEEECTTT--------SSCSSSCCCC
T ss_pred CcCccccCEec-cceEE--ECCceeCccC--------CccccCCCCC
Confidence 36888888777 33332 3577888777 3466666554
No 174
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=21.50 E-value=56 Score=22.97 Aligned_cols=39 Identities=21% Similarity=0.376 Sum_probs=26.6
Q ss_pred Cccccccccccc---CCceEEeCCCCcccHHHHHHHHhcCCCccccCcCcC
Q 019720 288 PECCICLAKYKE---KEEVRKLPCSHMFHLKCVDQWLRILSCCPLCKQELE 335 (336)
Q Consensus 288 ~~C~ICL~~f~~---~~~vr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~ 335 (336)
..|+-|-..+.+ +++. +..=+..||.+| .+|-.|++++.
T Consensus 16 ~~C~~C~~~I~~~g~~~~~-~~a~~~~~H~~C--------F~C~~C~~~L~ 57 (77)
T 2egq_A 16 KKCAGCKNPITGFGKGSSV-VAYEGQSWHDYC--------FHCKKCSVNLA 57 (77)
T ss_dssp CCCSSSCCCCCCCSSCCCE-EEETTEEEETTT--------CBCSSSCCBCT
T ss_pred ccCcccCCcccCCCCCcee-EEECcceeCccc--------CEehhcCCCCC
Confidence 579999988885 3232 223578899888 46777777663
No 175
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.15 E-value=42 Score=24.07 Aligned_cols=37 Identities=19% Similarity=0.521 Sum_probs=20.5
Q ss_pred CCcccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCccccCcCc
Q 019720 287 DPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILSCCPLCKQEL 334 (336)
Q Consensus 287 ~~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I 334 (336)
...|.-|-..+.+ ..+ ..-+..||.+| .+|-.|++++
T Consensus 15 ~~~C~~C~~~I~~-~~~--~a~~~~~H~~C--------F~C~~C~~~L 51 (81)
T 2dlo_A 15 LEKCATCSQPILD-RIL--RAMGKAYHPGC--------FTCVVCHRGL 51 (81)
T ss_dssp CCBCTTTCCBCCS-CCE--EETTEEECTTT--------CBCSSSCCBC
T ss_pred CCccccCCCeecc-eeE--EECCccccHHh--------cCcccCCCcc
Confidence 3467777766653 222 22456677666 3466666554
No 176
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=20.85 E-value=77 Score=23.47 Aligned_cols=47 Identities=15% Similarity=0.294 Sum_probs=26.8
Q ss_pred CCCCcccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCccccCcCcC
Q 019720 285 NEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILSCCPLCKQELE 335 (336)
Q Consensus 285 ~~~~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~ 335 (336)
.+-..|..|-..+.++. .. ..=+..|+..|..+ .-...|..|.++|.
T Consensus 31 ~~CF~C~~C~~~L~~~~-~~-~~~g~~yC~~cy~~--~~~~~C~~C~~~I~ 77 (101)
T 2cup_A 31 DTCFRCAKCLHPLANET-FV-AKDNKILCNKCTTR--EDSPKCKGCFKAIV 77 (101)
T ss_dssp TTTCCCSSSCCCTTSSC-CE-EETTEEECHHHHTT--CCCCBCSSSCCBCC
T ss_pred hcCCcccccCCCCCcCe-eE-CcCCEEEChhHhhh--hcCCccccCCCccc
Confidence 34567777777764332 11 12355666666533 22467888888774
No 177
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=20.36 E-value=46 Score=29.09 Aligned_cols=35 Identities=14% Similarity=0.394 Sum_probs=24.1
Q ss_pred CCCcccccccccccCCc-eEEeCCCCcccHHHHHHH
Q 019720 286 EDPECCICLAKYKEKEE-VRKLPCSHMFHLKCVDQW 320 (336)
Q Consensus 286 ~~~~C~ICL~~f~~~~~-vr~LPC~H~FH~~CI~~W 320 (336)
++..|.+|...|.--.. -.-=.||++||..|-...
T Consensus 160 ~~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~~ 195 (220)
T 1dvp_A 160 DGRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQ 195 (220)
T ss_dssp CCSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCEE
T ss_pred CCCccCCCCCccCCcccccccCCcCCEEChHHhCCe
Confidence 35799999999875321 111138999999997654
No 178
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=20.15 E-value=85 Score=26.53 Aligned_cols=35 Identities=29% Similarity=0.549 Sum_probs=24.8
Q ss_pred CCCCcccccccccccCCceEEe---CCCCcccHHHHHHHHhc
Q 019720 285 NEDPECCICLAKYKEKEEVRKL---PCSHMFHLKCVDQWLRI 323 (336)
Q Consensus 285 ~~~~~C~ICL~~f~~~~~vr~L---PC~H~FH~~CI~~WL~~ 323 (336)
..+..|.||-+ |.++..- .|...|+.+||+..+..
T Consensus 77 G~~~yC~wC~~----Gg~l~~Cdn~~C~r~FC~~CI~~nvG~ 114 (159)
T 3a1b_A 77 GYQSYCTICCG----GREVLMCGNNNCCRCFCVECVDLLVGP 114 (159)
T ss_dssp SSBSSCTTTSC----CSEEEECSSTTTCCEEEHHHHHHHTCT
T ss_pred CCcceeeEecC----CCeEEeeCCCCCCCchhHHHHHHhcCH
Confidence 45678999984 3333332 27799999999998743
Done!