Query 019721
Match_columns 336
No_of_seqs 279 out of 2438
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 04:01:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019721.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019721hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0484 DnaJ DnaJ-class molecu 100.0 1.4E-76 3E-81 556.9 26.1 281 41-335 1-284 (371)
2 PRK14296 chaperone protein Dna 100.0 3.8E-67 8.3E-72 504.9 27.1 279 43-335 3-294 (372)
3 PRK14298 chaperone protein Dna 100.0 3.4E-66 7.3E-71 499.2 26.2 281 42-335 3-285 (377)
4 PRK14287 chaperone protein Dna 100.0 4.5E-66 9.7E-71 497.7 26.8 279 43-335 3-282 (371)
5 PRK14276 chaperone protein Dna 100.0 7.2E-66 1.6E-70 498.0 26.7 281 43-335 3-290 (380)
6 PRK14280 chaperone protein Dna 100.0 1.1E-65 2.4E-70 496.0 26.7 281 43-335 3-287 (376)
7 PRK14288 chaperone protein Dna 100.0 1.5E-65 3.2E-70 493.8 25.1 276 43-335 2-278 (369)
8 PRK14278 chaperone protein Dna 100.0 4.1E-65 8.8E-70 492.1 27.8 281 43-335 2-283 (378)
9 PRK14282 chaperone protein Dna 100.0 3.7E-65 7.9E-70 491.6 27.2 283 42-335 2-296 (369)
10 PTZ00037 DnaJ_C chaperone prot 100.0 2.1E-65 4.6E-70 497.6 24.6 288 21-335 5-294 (421)
11 PRK14286 chaperone protein Dna 100.0 6.8E-65 1.5E-69 489.6 25.2 281 43-335 3-290 (372)
12 PRK14277 chaperone protein Dna 100.0 9E-65 2E-69 491.3 26.1 286 41-335 2-299 (386)
13 PRK14297 chaperone protein Dna 100.0 3.7E-64 8E-69 486.3 27.2 283 43-335 3-292 (380)
14 PRK14285 chaperone protein Dna 100.0 4.1E-64 9E-69 483.1 25.3 277 43-335 2-286 (365)
15 PRK14279 chaperone protein Dna 100.0 1E-63 2.2E-68 484.1 25.1 287 43-335 8-313 (392)
16 PRK14284 chaperone protein Dna 100.0 1.2E-63 2.5E-68 484.2 25.2 280 44-335 1-298 (391)
17 PRK14294 chaperone protein Dna 100.0 5.7E-63 1.2E-67 475.9 25.0 280 42-335 2-284 (366)
18 PRK14301 chaperone protein Dna 100.0 4.7E-63 1E-67 477.0 24.2 276 43-335 3-284 (373)
19 PRK14281 chaperone protein Dna 100.0 1E-62 2.2E-67 478.3 26.7 292 43-335 2-306 (397)
20 TIGR02349 DnaJ_bact chaperone 100.0 8.4E-63 1.8E-67 473.6 25.7 281 45-335 1-287 (354)
21 PRK14295 chaperone protein Dna 100.0 9.1E-63 2E-67 477.1 26.1 285 42-335 7-306 (389)
22 PRK14291 chaperone protein Dna 100.0 2.5E-62 5.4E-67 473.6 26.2 287 43-335 2-295 (382)
23 PRK10767 chaperone protein Dna 100.0 3.1E-62 6.6E-67 472.1 25.7 277 42-335 2-282 (371)
24 PRK14283 chaperone protein Dna 100.0 3.2E-62 6.9E-67 472.6 25.3 290 40-335 1-290 (378)
25 PRK14289 chaperone protein Dna 100.0 8.9E-62 1.9E-66 470.9 26.6 292 41-335 2-298 (386)
26 PRK14290 chaperone protein Dna 100.0 3.2E-61 7E-66 463.6 27.3 282 44-335 3-290 (365)
27 PRK14300 chaperone protein Dna 100.0 2E-61 4.4E-66 465.8 25.5 281 43-335 2-285 (372)
28 PRK14292 chaperone protein Dna 100.0 2.7E-60 5.8E-65 458.6 26.6 280 44-335 2-282 (371)
29 PRK14293 chaperone protein Dna 100.0 2E-60 4.4E-65 459.4 25.6 285 43-335 2-287 (374)
30 KOG0712 Molecular chaperone (D 100.0 2.2E-58 4.8E-63 428.1 17.3 267 42-334 2-271 (337)
31 PRK14299 chaperone protein Dna 100.0 2.1E-45 4.5E-50 343.7 18.6 210 43-335 3-221 (291)
32 PRK10266 curved DNA-binding pr 100.0 6.4E-44 1.4E-48 336.1 20.7 222 43-335 3-229 (306)
33 KOG0715 Molecular chaperone (D 100.0 1.5E-42 3.2E-47 322.2 13.5 245 45-327 44-288 (288)
34 KOG0713 Molecular chaperone (D 100.0 1.8E-39 4E-44 298.2 8.6 257 40-335 12-271 (336)
35 TIGR03835 termin_org_DnaJ term 100.0 4.1E-28 8.9E-33 242.7 18.5 110 165-335 657-766 (871)
36 KOG0714 Molecular chaperone (D 99.8 9.8E-21 2.1E-25 176.3 13.1 232 43-334 2-271 (306)
37 KOG0716 Molecular chaperone (D 99.8 8.8E-21 1.9E-25 169.8 3.8 72 43-114 30-102 (279)
38 PTZ00341 Ring-infected erythro 99.8 2.9E-20 6.2E-25 190.5 6.6 76 39-114 568-643 (1136)
39 KOG0691 Molecular chaperone (D 99.8 3.3E-20 7.2E-25 171.4 3.9 90 42-139 3-93 (296)
40 COG2214 CbpA DnaJ-class molecu 99.8 1.5E-18 3.2E-23 154.7 13.6 69 41-109 3-73 (237)
41 KOG0718 Molecular chaperone (D 99.8 5E-20 1.1E-24 175.0 4.2 73 42-114 7-83 (546)
42 KOG0624 dsRNA-activated protei 99.8 6.6E-19 1.4E-23 162.7 7.6 76 40-116 390-469 (504)
43 KOG0717 Molecular chaperone (D 99.8 2.4E-19 5.3E-24 170.3 3.7 74 42-115 6-81 (508)
44 PF00226 DnaJ: DnaJ domain; I 99.7 2E-18 4.2E-23 125.3 3.5 62 45-106 1-64 (64)
45 KOG0719 Molecular chaperone (D 99.7 5.2E-18 1.1E-22 148.5 4.4 69 43-111 13-84 (264)
46 PHA03102 Small T antigen; Revi 99.7 1.7E-17 3.7E-22 139.5 5.6 85 43-139 4-90 (153)
47 smart00271 DnaJ DnaJ molecular 99.7 1.6E-16 3.5E-21 113.5 5.6 58 44-101 1-60 (60)
48 KOG0721 Molecular chaperone (D 99.6 1.9E-16 4E-21 137.7 5.3 71 41-111 96-167 (230)
49 cd06257 DnaJ DnaJ domain or J- 99.6 4.5E-16 9.7E-21 109.1 5.7 54 45-98 1-55 (55)
50 COG0484 DnaJ DnaJ-class molecu 99.6 3.4E-16 7.5E-21 148.3 6.3 121 190-322 158-348 (371)
51 KOG0550 Molecular chaperone (D 99.6 3.9E-16 8.5E-21 147.3 5.3 93 38-136 367-461 (486)
52 PRK14282 chaperone protein Dna 99.6 3.7E-15 8.1E-20 144.1 6.5 119 191-321 169-360 (369)
53 PRK14290 chaperone protein Dna 99.5 1.6E-14 3.4E-19 139.6 7.4 119 191-321 165-353 (365)
54 PRK14298 chaperone protein Dna 99.5 1.2E-14 2.6E-19 140.8 6.4 119 192-322 159-349 (377)
55 PRK14294 chaperone protein Dna 99.5 1.7E-14 3.6E-19 139.5 6.6 120 191-322 161-348 (366)
56 PRK14285 chaperone protein Dna 99.5 1.8E-14 4E-19 139.0 5.7 119 191-321 163-350 (365)
57 PRK10767 chaperone protein Dna 99.5 3.2E-14 6.9E-19 137.8 6.9 58 265-322 289-346 (371)
58 PRK14300 chaperone protein Dna 99.5 2.9E-14 6.3E-19 138.0 6.4 119 191-321 162-349 (372)
59 PRK14301 chaperone protein Dna 99.5 3.4E-14 7.3E-19 137.6 6.5 120 191-322 161-348 (373)
60 PRK14278 chaperone protein Dna 99.5 5E-14 1.1E-18 136.6 7.2 119 191-321 156-347 (378)
61 PRK14284 chaperone protein Dna 99.5 3.7E-14 7.9E-19 138.2 6.3 119 191-321 175-363 (391)
62 PRK14286 chaperone protein Dna 99.5 4E-14 8.7E-19 137.0 6.1 118 192-321 168-354 (372)
63 PRK14288 chaperone protein Dna 99.5 9.1E-14 2E-18 134.4 7.6 120 190-321 155-342 (369)
64 PRK14279 chaperone protein Dna 99.5 9.9E-14 2.1E-18 135.1 7.5 118 191-321 190-375 (392)
65 PRK14281 chaperone protein Dna 99.5 8.4E-14 1.8E-18 135.8 6.9 119 191-321 179-369 (397)
66 PRK14287 chaperone protein Dna 99.4 8.1E-14 1.8E-18 134.8 6.1 119 191-321 155-345 (371)
67 KOG0722 Molecular chaperone (D 99.4 2.2E-14 4.8E-19 127.2 2.0 69 41-109 30-98 (329)
68 PF00684 DnaJ_CXXCXGXG: DnaJ c 99.4 1.9E-13 4.2E-18 99.6 6.2 65 194-258 1-66 (66)
69 PRK14276 chaperone protein Dna 99.4 1.1E-13 2.3E-18 134.5 6.3 57 265-321 297-353 (380)
70 PRK14280 chaperone protein Dna 99.4 1.5E-13 3.4E-18 133.2 7.2 57 265-321 294-350 (376)
71 PRK14296 chaperone protein Dna 99.4 1.5E-13 3.3E-18 132.9 7.0 119 191-321 166-358 (372)
72 TIGR02349 DnaJ_bact chaperone 99.4 1.1E-13 2.4E-18 133.3 6.1 118 191-320 160-349 (354)
73 PRK14295 chaperone protein Dna 99.4 1.4E-13 3.1E-18 133.9 6.6 118 191-321 183-369 (389)
74 PRK05014 hscB co-chaperone Hsc 99.4 1.4E-13 3E-18 119.0 5.6 64 44-107 1-72 (171)
75 PRK14297 chaperone protein Dna 99.4 1.7E-13 3.8E-18 133.0 6.6 118 191-320 165-354 (380)
76 PRK14293 chaperone protein Dna 99.4 1.8E-13 4E-18 132.6 6.6 120 191-322 160-352 (374)
77 PRK01356 hscB co-chaperone Hsc 99.4 1.3E-13 2.9E-18 118.4 4.8 64 44-107 2-71 (166)
78 PRK14277 chaperone protein Dna 99.4 2E-13 4.3E-18 132.8 6.5 119 191-321 172-362 (386)
79 PTZ00037 DnaJ_C chaperone prot 99.4 3.2E-13 7E-18 132.2 7.2 120 191-320 166-362 (421)
80 PRK14289 chaperone protein Dna 99.4 2.7E-13 5.9E-18 132.0 6.3 118 191-320 171-360 (386)
81 KOG0720 Molecular chaperone (D 99.4 1.9E-13 4.1E-18 130.6 4.0 66 43-108 234-299 (490)
82 PRK00294 hscB co-chaperone Hsc 99.4 5E-13 1.1E-17 115.4 6.1 66 42-107 2-75 (173)
83 PRK14291 chaperone protein Dna 99.4 4.8E-13 1E-17 130.0 6.4 118 191-321 173-367 (382)
84 PTZ00100 DnaJ chaperone protei 99.4 4.9E-13 1.1E-17 107.0 4.7 52 43-97 64-115 (116)
85 PRK14283 chaperone protein Dna 99.4 6.5E-13 1.4E-17 129.0 6.6 119 191-321 163-353 (378)
86 PRK03578 hscB co-chaperone Hsc 99.4 6.1E-13 1.3E-17 115.3 5.5 68 43-110 5-82 (176)
87 PRK14292 chaperone protein Dna 99.3 1E-12 2.2E-17 127.4 6.3 56 266-321 290-345 (371)
88 PRK09430 djlA Dna-J like membr 99.3 3.3E-12 7.2E-17 118.1 4.9 58 42-99 198-263 (267)
89 PHA02624 large T antigen; Prov 99.2 4.8E-12 1E-16 126.6 4.8 61 42-105 9-71 (647)
90 PF01556 CTDII: DnaJ C termina 99.2 1.5E-11 3.3E-16 93.4 4.3 53 264-316 27-80 (81)
91 COG5407 SEC63 Preprotein trans 99.1 1.9E-11 4.1E-16 116.4 2.9 70 42-111 96-171 (610)
92 PRK14299 chaperone protein Dna 99.0 7.2E-10 1.6E-14 104.0 5.3 87 161-321 197-283 (291)
93 TIGR00714 hscB Fe-S protein as 98.9 1.6E-09 3.4E-14 92.5 5.5 52 56-107 3-60 (157)
94 PRK01773 hscB co-chaperone Hsc 98.9 2.3E-09 5E-14 92.7 5.5 64 44-107 2-73 (173)
95 PRK10266 curved DNA-binding pr 98.8 9.5E-09 2.1E-13 97.2 5.7 84 162-320 206-289 (306)
96 KOG0712 Molecular chaperone (D 98.8 2.1E-08 4.6E-13 94.3 7.7 105 193-308 145-324 (337)
97 COG5269 ZUO1 Ribosome-associat 98.7 8.7E-09 1.9E-13 92.7 3.7 67 44-110 43-115 (379)
98 KOG1150 Predicted molecular ch 98.7 1.2E-08 2.5E-13 88.0 3.6 61 42-102 51-113 (250)
99 PLN03165 chaperone protein dna 98.7 4.6E-08 1E-12 77.9 6.4 60 191-262 41-100 (111)
100 KOG0568 Molecular chaperone (D 98.5 8.3E-08 1.8E-12 84.6 4.2 56 44-99 47-103 (342)
101 TIGR03835 termin_org_DnaJ term 98.3 1.1E-06 2.4E-11 89.8 6.6 71 44-114 2-72 (871)
102 KOG1789 Endocytosis protein RM 98.2 1E-06 2.2E-11 91.8 5.0 57 40-98 1277-1337(2235)
103 KOG0723 Molecular chaperone (D 98.2 1.6E-06 3.5E-11 67.5 4.8 53 44-99 56-108 (112)
104 TIGR02642 phage_xxxx uncharact 98.0 4.9E-06 1.1E-10 72.4 4.3 48 235-283 100-149 (186)
105 PF00684 DnaJ_CXXCXGXG: DnaJ c 97.8 1E-05 2.2E-10 58.8 1.7 43 191-244 15-66 (66)
106 COG1107 Archaea-specific RecJ- 97.7 2.9E-05 6.2E-10 77.1 3.4 69 192-261 3-81 (715)
107 PLN03165 chaperone protein dna 96.8 0.00091 2E-08 53.5 2.6 41 193-248 54-100 (111)
108 COG1107 Archaea-specific RecJ- 96.7 0.0018 3.9E-08 64.7 4.5 47 191-248 18-82 (715)
109 KOG3192 Mitochondrial J-type c 96.5 0.002 4.2E-08 54.0 2.9 68 40-107 4-79 (168)
110 TIGR02642 phage_xxxx uncharact 96.4 0.0028 6E-08 55.4 3.2 29 209-247 100-128 (186)
111 KOG2813 Predicted molecular ch 96.2 0.0055 1.2E-07 57.0 4.3 62 191-270 198-278 (406)
112 COG1076 DjlA DnaJ-domain-conta 96.2 0.0023 4.9E-08 55.6 1.7 53 43-95 112-172 (174)
113 COG1076 DjlA DnaJ-domain-conta 94.4 0.022 4.8E-07 49.4 1.8 63 45-107 2-72 (174)
114 KOG2813 Predicted molecular ch 94.4 0.023 4.9E-07 53.0 1.9 74 178-260 171-257 (406)
115 KOG0431 Auxilin-like protein a 93.5 0.09 2E-06 52.4 4.5 49 47-95 391-447 (453)
116 PF03656 Pam16: Pam16; InterP 92.4 0.25 5.5E-06 40.5 4.8 55 43-100 57-111 (127)
117 PF11833 DUF3353: Protein of u 87.0 1.4 3.1E-05 38.9 5.5 38 53-97 1-38 (194)
118 KOG0724 Zuotin and related mol 84.3 0.97 2.1E-05 43.2 3.4 53 56-108 4-61 (335)
119 KOG0715 Molecular chaperone (D 84.0 1.1 2.5E-05 42.0 3.6 48 188-247 178-230 (288)
120 PF13446 RPT: A repeated domai 83.8 2.2 4.7E-05 30.1 4.2 26 45-70 6-31 (62)
121 smart00709 Zpr1 Duplicated dom 82.1 7.7 0.00017 33.1 7.7 20 265-284 81-100 (160)
122 TIGR00310 ZPR1_znf ZPR1 zinc f 81.7 7.8 0.00017 34.2 7.8 75 210-284 2-100 (192)
123 KOG2824 Glutaredoxin-related p 77.9 2.3 5E-05 39.3 3.3 45 192-246 230-274 (281)
124 PRK14714 DNA polymerase II lar 76.6 1.7 3.7E-05 48.0 2.4 68 180-266 657-727 (1337)
125 cd03031 GRX_GRX_like Glutaredo 75.9 2.7 5.9E-05 35.4 3.0 26 192-223 100-125 (147)
126 COG5552 Uncharacterized conser 75.1 10 0.00022 27.8 5.4 46 43-88 2-47 (88)
127 KOG2824 Glutaredoxin-related p 74.8 3.4 7.4E-05 38.2 3.5 37 209-260 230-274 (281)
128 TIGR00340 zpr1_rel ZPR1-relate 74.7 11 0.00024 32.4 6.4 35 211-245 1-39 (163)
129 cd03031 GRX_GRX_like Glutaredo 73.4 4.2 9E-05 34.3 3.5 37 208-259 99-144 (147)
130 PRK04023 DNA polymerase II lar 72.5 1.9 4.1E-05 46.5 1.5 70 175-265 610-680 (1121)
131 TIGR00630 uvra excinuclease AB 71.7 3.2 6.9E-05 45.3 3.0 33 209-245 737-770 (924)
132 PF03589 Antiterm: Antitermina 69.3 1.6 3.4E-05 34.0 0.0 38 209-246 6-44 (95)
133 COG0178 UvrA Excinuclease ATPa 66.8 5 0.00011 42.7 3.1 35 209-246 731-765 (935)
134 PRK00349 uvrA excinuclease ABC 65.4 4.9 0.00011 43.9 2.9 34 209-245 739-772 (943)
135 PF04246 RseC_MucC: Positive r 63.4 15 0.00033 30.1 4.9 22 264-285 42-63 (135)
136 TIGR03655 anti_R_Lar restricti 62.3 13 0.00027 25.4 3.5 14 209-222 2-15 (53)
137 PRK00635 excinuclease ABC subu 60.2 6.7 0.00015 45.6 2.9 35 208-246 1607-1642(1809)
138 PF10041 DUF2277: Uncharacteri 60.2 45 0.00097 24.7 6.1 45 44-88 3-47 (78)
139 PRK14559 putative protein seri 58.4 6.5 0.00014 41.1 2.2 51 192-259 2-52 (645)
140 TIGR00630 uvra excinuclease AB 58.4 4.5 9.7E-05 44.1 1.0 29 235-263 737-774 (924)
141 PRK00349 uvrA excinuclease ABC 53.7 9.5 0.00021 41.8 2.6 29 235-263 739-776 (943)
142 PRK05978 hypothetical protein; 52.1 7.2 0.00016 32.9 1.1 7 235-241 53-59 (148)
143 PF03833 PolC_DP2: DNA polymer 52.0 4.8 0.0001 42.8 0.0 51 191-261 655-705 (900)
144 COG0178 UvrA Excinuclease ATPa 49.9 14 0.00031 39.5 3.0 28 235-262 731-767 (935)
145 PF12434 Malate_DH: Malate deh 48.5 21 0.00045 20.9 2.3 17 58-74 10-26 (28)
146 PF07709 SRR: Seven Residue Re 47.9 11 0.00024 18.4 1.0 13 85-97 2-14 (14)
147 PRK03564 formate dehydrogenase 46.7 22 0.00049 33.7 3.6 21 236-256 214-234 (309)
148 PF14687 DUF4460: Domain of un 46.2 44 0.00095 26.8 4.7 45 54-98 4-53 (112)
149 PRK00635 excinuclease ABC subu 45.7 12 0.00026 43.7 1.9 30 191-220 1607-1642(1809)
150 PRK00564 hypA hydrogenase nick 44.9 50 0.0011 26.5 4.9 32 189-220 69-100 (117)
151 COG1198 PriA Primosomal protei 43.6 16 0.00035 38.8 2.3 50 191-257 435-484 (730)
152 PF08792 A2L_zn_ribbon: A2L zi 40.9 20 0.00044 22.1 1.6 13 209-221 4-16 (33)
153 PF07092 DUF1356: Protein of u 40.3 10 0.00022 34.5 0.2 15 209-223 39-53 (238)
154 PF09538 FYDLN_acid: Protein o 40.1 19 0.00041 28.7 1.7 25 191-215 9-33 (108)
155 PRK12336 translation initiatio 38.0 1.1E+02 0.0024 27.1 6.4 12 87-98 5-16 (201)
156 PRK14873 primosome assembly pr 36.8 25 0.00055 37.0 2.5 58 183-258 370-432 (665)
157 smart00440 ZnF_C2C2 C2C2 Zinc 35.2 64 0.0014 20.6 3.3 32 210-241 2-35 (40)
158 COG5349 Uncharacterized protei 35.2 12 0.00025 30.4 -0.2 11 210-221 23-33 (126)
159 PF07092 DUF1356: Protein of u 34.3 24 0.00051 32.2 1.6 14 235-248 39-52 (238)
160 COG1326 Uncharacterized archae 33.0 81 0.0018 27.8 4.6 19 267-285 66-86 (201)
161 PF10080 DUF2318: Predicted me 32.2 1.1E+02 0.0023 24.1 4.8 24 235-258 36-62 (102)
162 PRK10862 SoxR reducing system 31.6 1.1E+02 0.0023 26.0 5.1 20 264-283 49-68 (154)
163 PF13719 zinc_ribbon_5: zinc-r 31.3 43 0.00093 21.0 2.0 9 192-200 3-11 (37)
164 TIGR01562 FdhE formate dehydro 30.7 55 0.0012 31.0 3.5 22 236-257 212-233 (305)
165 TIGR02300 FYDLN_acid conserved 30.7 35 0.00075 28.0 1.8 27 191-217 9-35 (129)
166 PRK12380 hydrogenase nickel in 30.6 45 0.00097 26.6 2.5 30 189-219 68-97 (113)
167 PF01096 TFIIS_C: Transcriptio 29.9 71 0.0015 20.3 2.9 32 210-241 2-35 (39)
168 PTZ00191 60S ribosomal protein 29.5 67 0.0015 27.0 3.4 35 17-51 30-67 (145)
169 PF14205 Cys_rich_KTR: Cystein 29.3 91 0.002 21.6 3.4 11 250-260 30-40 (55)
170 PF03367 zf-ZPR1: ZPR1 zinc-fi 29.0 70 0.0015 27.3 3.6 37 209-245 2-41 (161)
171 PF01846 FF: FF domain; Inter 28.8 63 0.0014 21.3 2.7 14 60-73 1-14 (51)
172 TIGR00595 priA primosomal prot 28.3 35 0.00076 34.7 1.8 50 191-257 213-262 (505)
173 PF12057 DUF3538: Domain of un 27.7 46 0.00099 27.0 2.0 19 82-100 51-69 (120)
174 PF01155 HypA: Hydrogenase exp 27.5 36 0.00079 27.1 1.5 30 189-219 68-97 (113)
175 PF09862 DUF2089: Protein of u 26.8 50 0.0011 26.5 2.1 20 237-256 1-20 (113)
176 PRK03681 hypA hydrogenase nick 25.7 62 0.0014 25.9 2.5 30 189-218 68-97 (114)
177 TIGR00757 RNaseEG ribonuclease 25.3 33 0.00072 34.0 1.0 13 235-247 391-403 (414)
178 PRK05580 primosome assembly pr 24.6 56 0.0012 34.5 2.6 51 191-258 381-431 (679)
179 PRK00464 nrdR transcriptional 24.2 80 0.0017 26.8 3.0 9 210-218 2-10 (154)
180 COG0089 RplW Ribosomal protein 24.2 70 0.0015 24.8 2.4 20 49-68 25-44 (94)
181 PF09285 Elong-fact-P_C: Elong 24.1 64 0.0014 22.5 2.0 21 265-285 29-49 (56)
182 PF07739 TipAS: TipAS antibiot 23.3 1E+02 0.0023 23.9 3.5 52 51-110 51-104 (118)
183 smart00841 Elong-fact-P_C Elon 22.9 71 0.0015 22.2 2.0 21 265-285 29-49 (56)
184 PRK00398 rpoP DNA-directed RNA 22.6 62 0.0013 21.1 1.6 6 193-198 5-10 (46)
185 PF13453 zf-TFIIB: Transcripti 22.5 58 0.0013 20.7 1.4 6 211-216 2-7 (41)
186 PF09855 DUF2082: Nucleic-acid 22.5 1.2E+02 0.0026 21.7 3.2 9 211-219 3-11 (64)
187 PRK03564 formate dehydrogenase 22.1 1.5E+02 0.0032 28.2 4.7 10 249-258 253-262 (309)
188 PHA02998 RNA polymerase subuni 22.0 1.2E+02 0.0027 26.3 3.7 34 208-241 143-178 (195)
189 PF10080 DUF2318: Predicted me 21.7 48 0.001 26.1 1.1 24 191-214 35-58 (102)
190 cd01780 PLC_epsilon_RA Ubiquit 21.6 1.2E+02 0.0026 23.5 3.1 38 40-77 7-44 (93)
191 PRK14890 putative Zn-ribbon RN 21.3 49 0.0011 23.3 1.0 6 250-255 50-55 (59)
192 PRK14873 primosome assembly pr 21.3 69 0.0015 33.8 2.5 40 191-244 392-432 (665)
193 PF12725 DUF3810: Protein of u 21.1 95 0.0021 29.6 3.2 56 44-99 82-149 (318)
194 COG1198 PriA Primosomal protei 21.1 59 0.0013 34.7 1.9 40 191-243 444-484 (730)
195 PRK13798 putative OHCU decarbo 21.0 2.5E+02 0.0054 24.0 5.5 26 69-94 67-109 (166)
196 smart00143 PI3K_p85B PI3-kinas 20.7 1.1E+02 0.0023 22.9 2.7 25 48-72 2-26 (78)
197 TIGR00100 hypA hydrogenase nic 20.6 98 0.0021 24.7 2.7 29 189-218 68-96 (115)
198 PF07295 DUF1451: Protein of u 20.5 78 0.0017 26.6 2.2 9 236-244 132-140 (146)
199 PF13717 zinc_ribbon_4: zinc-r 20.3 89 0.0019 19.5 1.9 9 192-200 3-11 (36)
200 KOG0714 Molecular chaperone (D 20.1 13 0.00028 33.9 -2.9 59 41-111 95-153 (306)
No 1
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-76 Score=556.90 Aligned_cols=281 Identities=44% Similarity=0.781 Sum_probs=252.8
Q ss_pred ccccCcceecccCCCCCHHHHHHHHHHHHHHhCCCCCC-CcchHHHHHHHHHHHHHhchhcccccccccCCCCcCCcccC
Q 019721 41 AAGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINK-SPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDG 119 (336)
Q Consensus 41 ~~~~d~Y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~-~~~~~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~g~~~~~~~ 119 (336)
++.+|||+||||+++||++|||+||||||+|||||+|+ +++|+++|++|++||||||||+||++||+||+++++.+..+
T Consensus 1 ~~~~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g~~~AeeKFKEI~eAYEVLsD~eKRa~YD~fG~~~~~~gg~g 80 (371)
T COG0484 1 MAKRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEKRAAYDQFGHAGFKAGGFG 80 (371)
T ss_pred CCccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHhhccCccccccCCcC
Confidence 35789999999999999999999999999999999999 88999999999999999999999999999999988632222
Q ss_pred CCCCCCCC--CchhhhccccCCCCCCCCCCCCCCCcccccCCCCCCCcceEEEEeecceeeeeceEEEEEeeeeeeCCCC
Q 019721 120 LSNTSQGV--DPFELYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSC 197 (336)
Q Consensus 120 ~~~~~~~~--d~~~~f~~ffg~~~~~fg~~g~~~~~~~~~~~~~~~g~di~~~l~vslee~~~G~~~~v~~~~~~~C~~C 197 (336)
+. ++.++ +..|||++|||++.+ + . ...+...++.|+.+.|.|||+||++|+++++.+++.+.|+.|
T Consensus 81 g~-g~~~fgg~~~DIF~~~FgGg~~--~---~------~~~~~~~rG~Dl~~~l~isleEa~~G~~~~i~~~~~~~C~~C 148 (371)
T COG0484 81 GF-GFGGFGGDFGDIFEDFFGGGGG--G---R------RRPNRPRRGADLRYNLEITLEEAVFGVKKEIRVTRSVTCSTC 148 (371)
T ss_pred CC-CcCCCCCCHHHHHHHhhcCCCc--c---c------CCCCCcccCCceEEEEEeEhhhhccCceeeEecceeeECCcC
Confidence 11 22222 578999999974211 0 0 012235689999999999999999999999999999999999
Q ss_pred CCCCccCCCCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCcceEEeeeeeecCCceEEeeeeEEEEEeCCCCCCC
Q 019721 198 GGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNG 277 (336)
Q Consensus 198 ~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~~~~~~~l~V~Ip~G~~~G 277 (336)
+|+|.+..+...+|+.|+|+|.+...+++ +.++++++|+.|+|+|++++++|..|+|.+++...++|+|+||+|+.+|
T Consensus 149 ~GsGak~gt~~~tC~tC~G~G~v~~~~~~--g~~~~~~~C~~C~G~G~~i~~pC~~C~G~G~v~~~~~i~V~IPaGv~~g 226 (371)
T COG0484 149 HGSGAKPGTDPKTCPTCNGSGQVRTVQRT--GFFSFQQTCPTCNGTGKIIKDPCGKCKGKGRVKKKKSISVNIPAGVDDG 226 (371)
T ss_pred CCCCCCCCCCCCcCCCCCCcCeEEEEEee--eEEEEEEECCCCccceeECCCCCCCCCCCCeEeeeeEEEEECCCCCccC
Confidence 99999999999999999999999888877 7788889999999999999999999999999999999999999999999
Q ss_pred cEEEEccCCCCCCCCCCCccEEEEEEEecCCCccccccceeeecccChhhhhcCceec
Q 019721 278 ATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSME 335 (336)
Q Consensus 278 ~~i~l~G~G~~~~~~g~~GDL~v~i~v~~~~~f~r~g~dL~~~~~I~l~eALlG~~~~ 335 (336)
++|+++|+|+++.+++++|||||+|.|++|+.|.|+++|||++++|++.+|+||++++
T Consensus 227 ~~ir~~g~G~~g~~Ggp~GDLyv~i~v~~h~~F~R~g~dL~~~~~Is~~~AalG~~i~ 284 (371)
T COG0484 227 DRIRLSGEGEAGPNGGPAGDLYVFVHVKPHPIFERDGDDLYCEVPISFTEAALGGEIE 284 (371)
T ss_pred CEEEEecCcccCCCCCCCccEEEEEEeecCCCeEECCCceEeccccCHHHHhcCCEEE
Confidence 9999999999988888999999999999999999999999999999999999998875
No 2
>PRK14296 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=3.8e-67 Score=504.91 Aligned_cols=279 Identities=33% Similarity=0.639 Sum_probs=240.6
Q ss_pred ccCcceecccCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhchhcccccccccCCCCcCCcc--cCC
Q 019721 43 GTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEY--DGL 120 (336)
Q Consensus 43 ~~d~Y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~~~~~~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~g~~~~~--~~~ 120 (336)
.+|||++|||+++||.+|||+|||+||++||||+|+++.|+++|++|++||+||+||+||++||+||++++..+. +++
T Consensus 3 ~~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~~~~a~~~F~~i~~AyevLsD~~KR~~YD~~G~~~~~~~~~~~~~ 82 (372)
T PRK14296 3 KKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSPDAHDKMVEINEAADVLLDKDKRKQYDQFGHAAFDGSSGFSSN 82 (372)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHhcCHHHhhhhhhccchhhcCCCCcCcC
Confidence 579999999999999999999999999999999998888999999999999999999999999999998765311 100
Q ss_pred CCCCC---------CCC-chhhhccccCCCCCCCCCCCCCCCcccccCCCCCCCcceEEEEeecceeeeeceEEEEEeee
Q 019721 121 SNTSQ---------GVD-PFELYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSC 190 (336)
Q Consensus 121 ~~~~~---------~~d-~~~~f~~ffg~~~~~fg~~g~~~~~~~~~~~~~~~g~di~~~l~vslee~~~G~~~~v~~~~ 190 (336)
.+++. +++ ..++|++|||++ . +. .....++.|+.+.|.|||+|+|+|+++++.+.+
T Consensus 83 ~~~~~~~~~~~~~~g~~~f~d~f~~~fggg--------~--~~----~~~~~~g~di~~~l~ltlee~~~G~~~~i~~~~ 148 (372)
T PRK14296 83 FGDFEDLFSNMGSSGFSSFTNIFSDFFGSN--------K--SD----YQRSTKGQSVSLDIYLTFKELLFGVDKIIELDL 148 (372)
T ss_pred CCccccccccccccccccchhhhhhhcCCC--------c--cC----CCCcCCCCCeEEEeeccHHHhhCCeeEEEEEee
Confidence 00000 111 124556555421 0 00 112356899999999999999999999999999
Q ss_pred eeeCCCCCCCCccCCCCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCcceEEeeeeeecCCceEEeeeeEEEEEe
Q 019721 191 FETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVI 270 (336)
Q Consensus 191 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~~~~~~~l~V~I 270 (336)
.+.|+.|+|+|........+|+.|+|+|.++..++.++.++++..+|+.|.|+|+++.+.|+.|.|.+++.+.++++|.|
T Consensus 149 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~I 228 (372)
T PRK14296 149 LTNCSKCFGSGAESNSDIHICNNCHGTGEVLVQKNMGFFQFQQSAKCNVCNGAGKIIKNKCKNCKGKGKYLERKKIEVNI 228 (372)
T ss_pred eeccCCCCCCccCCCCCCccCCCCCCCceEEEEEeccceEEEEEecCCCcCCcceeecccccCCCCceEEEEEEEEEEEE
Confidence 99999999999998888899999999999988887777555666899999999999999999999999999999999999
Q ss_pred CCCCCCCcEEEEccCCCCCCCCCCCccEEEEEEEecCCCcccc-ccceeeecccChhhhhcCceec
Q 019721 271 PPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRD-GLNLFSKISVDYTEAILGTSME 335 (336)
Q Consensus 271 p~G~~~G~~i~l~G~G~~~~~~g~~GDL~v~i~v~~~~~f~r~-g~dL~~~~~I~l~eALlG~~~~ 335 (336)
|||+++|++|+|+|+|++..+++.+|||+|+|++++|+.|+|+ |+|||++++|+|+|||||++++
T Consensus 229 p~G~~~G~~i~~~g~G~~~~~~~~~GDL~v~v~v~~h~~F~R~~G~DL~~~~~Isl~eAllG~~~~ 294 (372)
T PRK14296 229 PKGIRPNQQIKLSQKGHASLNNGVNGDLIIDIYLKESKVFEIINNNDILMTYNISYLDAILGNEII 294 (372)
T ss_pred CCCCCCCCEEEEeccccCCCCCCCCccEEEEEEEeCCCCEEEeCCCcEEEEEecCHHHHhCCCEEE
Confidence 9999999999999999987667789999999999999999995 8999999999999999999874
No 3
>PRK14298 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=3.4e-66 Score=499.16 Aligned_cols=281 Identities=41% Similarity=0.766 Sum_probs=246.9
Q ss_pred cccCcceecccCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhchhcccccccccCCCCcCCcccCCC
Q 019721 42 AGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLS 121 (336)
Q Consensus 42 ~~~d~Y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~~~~~~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~g~~~~~~~~~ 121 (336)
..+|||+||||+++||.+|||+|||+||++||||+|+++.++++|++|++||+||+||++|++||+||+++++.++++..
T Consensus 3 ~~~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~~~~~~~~ 82 (377)
T PRK14298 3 TTRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKEPDAEEKFKEISEAYAVLSDAEKRAQYDRFGHAGIDNQYSAED 82 (377)
T ss_pred CCCCHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHHHhcchHhhhhhhhcCccccccccCccc
Confidence 35799999999999999999999999999999999988889999999999999999999999999999987764321100
Q ss_pred C-CCCC-CCchhhhccccCCCCCCCCCCCCCCCcccccCCCCCCCcceEEEEeecceeeeeceEEEEEeeeeeeCCCCCC
Q 019721 122 N-TSQG-VDPFELYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGG 199 (336)
Q Consensus 122 ~-~~~~-~d~~~~f~~ffg~~~~~fg~~g~~~~~~~~~~~~~~~g~di~~~l~vslee~~~G~~~~v~~~~~~~C~~C~G 199 (336)
. ...+ .+..++|++|||++. .. . ...+.++.|+.++|.|||+|+|+|+++++.+.+.+.|+.|+|
T Consensus 83 ~~~~~~~~~~~d~f~~~Fgg~~-------~~-~-----~~~~~~g~di~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G 149 (377)
T PRK14298 83 IFRGADFGGFGDIFEMFFGGGG-------RR-G-----RMGPRRGSDLRYDLYITLEEAAFGVRKDIDVPRAERCSTCSG 149 (377)
T ss_pred ccccCCcCcchhhhHhhhcCCC-------cc-C-----CCCCCCCCCEEEEEEEEHHHhhCCeEEEEEEEeeccCCCCCC
Confidence 0 0011 123377888886410 00 0 012357899999999999999999999999999999999999
Q ss_pred CCccCCCCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCcceEEeeeeeecCCceEEeeeeEEEEEeCCCCCCCcE
Q 019721 200 TGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGAT 279 (336)
Q Consensus 200 ~G~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~~~~~~~l~V~Ip~G~~~G~~ 279 (336)
+|........+|+.|+|+|.++..++++++++++..+|+.|+|+|+++.+.|+.|.|.+++.+.++++|.||||+++|++
T Consensus 150 ~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~IppG~~~G~~ 229 (377)
T PRK14298 150 TGAKPGTSPKRCPTCGGTGQVTTTRSTPLGQFVTTTTCSTCHGRGQVIESPCPVCSGTGKVRKTRKITVNVPAGADSGLR 229 (377)
T ss_pred CcccCCCCCCcCCCCCCccEEEEEEecCceeEEEEEeCCCCCCCCcccCCCCCCCCCccEEEEEEEEEecCCCCCCCCCE
Confidence 99998888899999999999998888888888778999999999999999999999999999999999999999999999
Q ss_pred EEEccCCCCCCCCCCCccEEEEEEEecCCCccccccceeeecccChhhhhcCceec
Q 019721 280 MQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSME 335 (336)
Q Consensus 280 i~l~G~G~~~~~~g~~GDL~v~i~v~~~~~f~r~g~dL~~~~~I~l~eALlG~~~~ 335 (336)
|+|+|+|++...++.+|||||+|++++|+.|+|+|+||++++.|+|+|||+|++++
T Consensus 230 i~~~g~G~~~~~~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~ 285 (377)
T PRK14298 230 LKLSGEGEAGSPGAPSGDLYIVLHVKEHDYFERVGDDIISEIPISFTQAALGADIM 285 (377)
T ss_pred EEEecccCCCCCCCCCcCEEEEEEEecCCCeEEEcCcEEEEEEeCHHHHhCCCeEE
Confidence 99999999976678899999999999999999999999999999999999999874
No 4
>PRK14287 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=4.5e-66 Score=497.66 Aligned_cols=279 Identities=37% Similarity=0.772 Sum_probs=247.2
Q ss_pred ccCcceecccCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhchhcccccccccCCCCcCCcccCCCC
Q 019721 43 GTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSN 122 (336)
Q Consensus 43 ~~d~Y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~~~~~~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~g~~~~~~~~~~ 122 (336)
..|||++|||+++||.+|||+|||+||++||||+|++++++++|++|++||+||+||++|++||+||++++..+++++
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~~~~f~~i~~Ay~~L~d~~kR~~YD~~G~~~~~~~~~~~-- 80 (371)
T PRK14287 3 KRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKAPDAEDKFKEVKEAYDTLSDPQKKAHYDQFGHTDPNQGFGGG-- 80 (371)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCcHhHHHHHHhhCCcccccccCCC--
Confidence 579999999999999999999999999999999998788999999999999999999999999999998775332111
Q ss_pred CCCCC-CchhhhccccCCCCCCCCCCCCCCCcccccCCCCCCCcceEEEEeecceeeeeceEEEEEeeeeeeCCCCCCCC
Q 019721 123 TSQGV-DPFELYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTG 201 (336)
Q Consensus 123 ~~~~~-d~~~~f~~ffg~~~~~fg~~g~~~~~~~~~~~~~~~g~di~~~l~vslee~~~G~~~~v~~~~~~~C~~C~G~G 201 (336)
+..++ +..|+|++|||++. +. .. .....++.|+.++|.|||+|+|+|+++++.+.+.+.|+.|+|+|
T Consensus 81 ~~~~f~~~~d~f~~~fgg~~------~~-~~-----~~~~~~g~d~~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G 148 (371)
T PRK14287 81 GAGDFGGFSDIFDMFFGGGG------GR-RN-----PNAPRQGADLQYTMTLEFKEAVFGKETEIEIPREETCGTCHGSG 148 (371)
T ss_pred CCccccchHHHHHhhhcccc------CC-CC-----CCCCCCCCCEEEEEEEEHHHhcCCeEEEEEEeeeccCCCCCCcc
Confidence 11111 23478888887421 00 00 01234689999999999999999999999999999999999999
Q ss_pred ccCCCCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCcceEEeeeeeecCCceEEeeeeEEEEEeCCCCCCCcEEE
Q 019721 202 AKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQ 281 (336)
Q Consensus 202 ~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~~~~~~~l~V~Ip~G~~~G~~i~ 281 (336)
........+|+.|+|+|.++..+++++|++++..+|+.|.|+|+++.+.|..|+|.+.+.+.++++|.||||+++|++|+
T Consensus 149 ~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~ 228 (371)
T PRK14287 149 AKPGTKPETCSHCGGSGQLNVEQNTPFGRVVNRRVCHHCEGTGKIIKQKCATCGGKGKVRKRKKINVKVPAGIDHGQQLR 228 (371)
T ss_pred cCCCCCCcccCCCCCEEEEEEEEecCCceEEEEEeCCCCCCCCccccccCCCCCCeeEEeeeEEEEEEECCcCCCCCEEE
Confidence 99888889999999999999999999999988899999999999999999999999999999999999999999999999
Q ss_pred EccCCCCCCCCCCCccEEEEEEEecCCCccccccceeeecccChhhhhcCceec
Q 019721 282 IRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSME 335 (336)
Q Consensus 282 l~G~G~~~~~~g~~GDL~v~i~v~~~~~f~r~g~dL~~~~~I~l~eALlG~~~~ 335 (336)
|+|+|++...++.+|||||+|++++|+.|+|+|+||++++.|+|+|||+|++++
T Consensus 229 ~~G~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~ 282 (371)
T PRK14287 229 VSGQGEAGVNGGPPGDLYVVFNVKPHEFFERDGDDIYCEMPLTFPQVALGDEIE 282 (371)
T ss_pred EccCCcCCCCCCCCccEEEEEEEecCCCEEEecCCeEEEEeccHHHHhCCCEEE
Confidence 999999976667889999999999999999999999999999999999999874
No 5
>PRK14276 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=7.2e-66 Score=498.00 Aligned_cols=281 Identities=38% Similarity=0.759 Sum_probs=247.6
Q ss_pred ccCcceecccCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhchhcccccccccCCCCcCCcccCC--
Q 019721 43 GTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGL-- 120 (336)
Q Consensus 43 ~~d~Y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~~~~~~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~g~~~~~~~~-- 120 (336)
.+|||+||||+++||.+|||+|||+||++||||+|+++.++++|++|++||+||+||++|++||+||++++..++++.
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~~~~~~~~~~~~ 82 (380)
T PRK14276 3 NTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKEPGAEEKYKEVQEAYETLSDPQKRAAYDQYGAAGANGGFGGGAG 82 (380)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhcCHhhhhhHhhcCCccccCCCCCCCC
Confidence 579999999999999999999999999999999998888999999999999999999999999999998876432110
Q ss_pred C-CCC---CC-CCchhhhccccCCCCCCCCCCCCCCCcccccCCCCCCCcceEEEEeecceeeeeceEEEEEeeeeeeCC
Q 019721 121 S-NTS---QG-VDPFELYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCD 195 (336)
Q Consensus 121 ~-~~~---~~-~d~~~~f~~ffg~~~~~fg~~g~~~~~~~~~~~~~~~g~di~~~l~vslee~~~G~~~~v~~~~~~~C~ 195 (336)
+ +++ .+ .+..++|++|||++. + ... .....++.|+.++|.|||+|+|+|+++++.+.+.+.|+
T Consensus 83 ~~~~~~~~~~~~~~~d~f~~~fgg~~----~---~~~-----~~~~~~g~di~~~l~vtLee~~~G~~~~i~~~~~~~C~ 150 (380)
T PRK14276 83 GFGGFDGSGGFGGFEDIFSSFFGGGG----A---RRN-----PNAPRQGDDLQYRVNLDFEEAIFGKEKEVSYNREATCH 150 (380)
T ss_pred CCCCccccccccchhhHHHHHhCccc----c---ccC-----cCCCCCCCCEEEEEEEEHHHhcCCeEEEEEeeccccCC
Confidence 0 110 01 233478888886410 0 000 11234789999999999999999999999999999999
Q ss_pred CCCCCCccCCCCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCcceEEeeeeeecCCceEEeeeeEEEEEeCCCCC
Q 019721 196 SCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVS 275 (336)
Q Consensus 196 ~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~~~~~~~l~V~Ip~G~~ 275 (336)
.|+|+|........+|+.|+|+|.+...+++++|++++..+|+.|+|+|+++...|..|.|.+++.+.++++|.||+|++
T Consensus 151 ~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~ 230 (380)
T PRK14276 151 TCNGSGAKPGTSPVTCGKCHGSGVITVDTQTPLGMMRRQVTCDVCHGTGKEIKEPCQTCHGTGHEKQAHTVSVKIPAGVE 230 (380)
T ss_pred CCcCcccCCCCCCccCCCCCCeeEEEEEEecCCceEEEEEECCCCCCCCccccCCCCCCCCceEEEEEEEEEEEeCCCcc
Confidence 99999999888889999999999999988999999998899999999999999999999999999999999999999999
Q ss_pred CCcEEEEccCCCCCCCCCCCccEEEEEEEecCCCccccccceeeecccChhhhhcCceec
Q 019721 276 NGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSME 335 (336)
Q Consensus 276 ~G~~i~l~G~G~~~~~~g~~GDL~v~i~v~~~~~f~r~g~dL~~~~~I~l~eALlG~~~~ 335 (336)
+|++|+|+|+|++...++.+|||+|+|+|++|+.|+|+|+||++++.|+|.|||+|++++
T Consensus 231 ~G~~i~l~G~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~ 290 (380)
T PRK14276 231 TGQQIRLQGQGEAGFNGGPYGDLYVVFRVEPSKKFERDGSTIYYTLPISFVQAALGDTVE 290 (380)
T ss_pred CCcEEEEeccccCCCCCCCCcCEEEEEEEEECcceeeecceEEEEEecCHHHHhCCCeEE
Confidence 999999999999976666789999999999999999999999999999999999999874
No 6
>PRK14280 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.1e-65 Score=496.02 Aligned_cols=281 Identities=42% Similarity=0.797 Sum_probs=247.9
Q ss_pred ccCcceecccCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhchhcccccccccCCCCcCCcccCCC-
Q 019721 43 GTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLS- 121 (336)
Q Consensus 43 ~~d~Y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~~~~~~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~g~~~~~~~~~- 121 (336)
..|||+||||+++||.+|||+|||+||++||||+|+++.++++|++|++||+||+||.+|++||+||++++..++++++
T Consensus 3 ~~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~~~~~~~~~~~ 82 (376)
T PRK14280 3 KRDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDQKRAQYDQFGHAGPNQGFGGGGF 82 (376)
T ss_pred CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhccHhHHHHHHhcCccccccCcCCCCC
Confidence 4799999999999999999999999999999999988889999999999999999999999999999988764321111
Q ss_pred C--CCC-CCCchhhhccccCCCCCCCCCCCCCCCcccccCCCCCCCcceEEEEeecceeeeeceEEEEEeeeeeeCCCCC
Q 019721 122 N--TSQ-GVDPFELYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCG 198 (336)
Q Consensus 122 ~--~~~-~~d~~~~f~~ffg~~~~~fg~~g~~~~~~~~~~~~~~~g~di~~~l~vslee~~~G~~~~v~~~~~~~C~~C~ 198 (336)
+ ++. +++..|+|++|||++. .... .....++.|+.++|.|||+|+|+|+++++.+.+.+.|+.|+
T Consensus 83 ~~~~~~~~~~~~d~f~~~fgg~~-------~~~~-----~~~~~kg~di~~~l~vtLee~~~G~~~~i~~~r~~~C~~C~ 150 (376)
T PRK14280 83 GGGDFGGGFGFEDIFSSFFGGGG-------RRRD-----PNAPRQGADLQYTMTLTFEEAVFGKEKEIEIPKEETCDTCH 150 (376)
T ss_pred CCCCccccccchhhHHHHhCCcc-------ccCc-----ccccccccCEEEEEEEEHHHHhCCceeEEEEeeeccCCCCC
Confidence 0 111 2234578888886410 0000 11234789999999999999999999999999999999999
Q ss_pred CCCccCCCCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCcceEEeeeeeecCCceEEeeeeEEEEEeCCCCCCCc
Q 019721 199 GTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGA 278 (336)
Q Consensus 199 G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~~~~~~~l~V~Ip~G~~~G~ 278 (336)
|+|........+|+.|+|+|.+...+++++|++++..+|+.|+|+|+++...|+.|+|.+++.+.++++|.||+|+++|+
T Consensus 151 G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~i~V~Ip~G~~~G~ 230 (376)
T PRK14280 151 GSGAKPGTSKETCSHCGGSGQVSVEQNTPFGRVVNRQTCPHCNGTGQEIKEKCPTCHGKGKVRKRKKINVKIPAGVDNGQ 230 (376)
T ss_pred CcccCCCCCCccCCCCCCEEEEEEEeecCCceEEEEEEcCCCCCCCceecCCCCCCCCceEEEEEEEEEEEeCCCCcCCc
Confidence 99999888889999999999999888899999988899999999999999999999999999999999999999999999
Q ss_pred EEEEccCCCCCCCCCCCccEEEEEEEecCCCccccccceeeecccChhhhhcCceec
Q 019721 279 TMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSME 335 (336)
Q Consensus 279 ~i~l~G~G~~~~~~g~~GDL~v~i~v~~~~~f~r~g~dL~~~~~I~l~eALlG~~~~ 335 (336)
+|+|+|+|++...++.+|||||+|++++|+.|+|+|+||++++.|+|+|||+|++++
T Consensus 231 ~i~l~G~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~ 287 (376)
T PRK14280 231 QIRVSGEGEPGVNGGPAGDLYVVFRVRPHEFFERDGDDIYCEMPLTFAQAALGDEIE 287 (376)
T ss_pred EEEEcccccCCCCCCCCcCEEEEEEEecCCCeEEecCCEEEEEecCHHHHhCCCEEE
Confidence 999999999976667889999999999999999999999999999999999999864
No 7
>PRK14288 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.5e-65 Score=493.79 Aligned_cols=276 Identities=38% Similarity=0.690 Sum_probs=232.8
Q ss_pred ccCcceecccCCCCCHHHHHHHHHHHHHHhCCCCCC-CcchHHHHHHHHHHHHHhchhcccccccccCCCCcCCcccCCC
Q 019721 43 GTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINK-SPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLS 121 (336)
Q Consensus 43 ~~d~Y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~-~~~~~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~g~~~~~~~~~ 121 (336)
..|||+||||+++||.+|||+|||+||++||||+|+ ++.|+++|++|++||+||+||++|++||+||++++..+. ++.
T Consensus 2 ~~dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~~~~~~a~~~f~~i~~AYevLsd~~kR~~YD~~G~~~~~~~~-~~~ 80 (369)
T PRK14288 2 ELSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRALYDRYGKKGLNQAG-ASQ 80 (369)
T ss_pred CCChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHHhccHHHHHHHHHhcccccccCC-CCc
Confidence 579999999999999999999999999999999998 567999999999999999999999999999998765321 100
Q ss_pred CCCCCCCchhhhccccCCCCCCCCCCCCCCCcccccCCCCCCCcceEEEEeecceeeeeceEEEEEeeeeeeCCCCCCCC
Q 019721 122 NTSQGVDPFELYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTG 201 (336)
Q Consensus 122 ~~~~~~d~~~~f~~ffg~~~~~fg~~g~~~~~~~~~~~~~~~g~di~~~l~vslee~~~G~~~~v~~~~~~~C~~C~G~G 201 (336)
. ...+.|+.|++||+. +|++ ++.+. ......++.|+.++|.|||+|+|+|+++++.+.+.+.|+.|+|+|
T Consensus 81 ~--~~~~~f~~~~~~F~~---~fg~-g~~~~----~~~~~~~g~di~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G 150 (369)
T PRK14288 81 S--DFSDFFEDLGSFFED---AFGF-GARGS----KRQKSSIAPDYLQTIELSFKEAVFGCKKTIKVQYQSVCESCDGTG 150 (369)
T ss_pred c--ccccchhhHHHHHHh---hcCC-CCccc----CcCCCCCCCCeeEeccccHHHHhCCeEEEEEEEeeccCCCCCCcc
Confidence 1 111233333334432 1221 00000 011235689999999999999999999999999999999999999
Q ss_pred ccCCCCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCcceEEeeeeeecCCceEEeeeeEEEEEeCCCCCCCcEEE
Q 019721 202 AKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQ 281 (336)
Q Consensus 202 ~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~~~~~~~l~V~Ip~G~~~G~~i~ 281 (336)
.... ...+|+.|+|+|.++..+ |++++.++|+.|.|+|+++...|+.|.|.+++.+.++++|.||||+++|++|+
T Consensus 151 ~~~~-~~~~C~~C~G~G~~~~~~----g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~IP~G~~~G~~i~ 225 (369)
T PRK14288 151 AKDK-ALETCKQCNGQGQVFMRQ----GFMSFAQTCGACQGKGKIIKTPCQACKGKTYILKDEEIDAIIPEGIDDQNRMV 225 (369)
T ss_pred cCCC-CCcCCCCCCCCcEEEEEe----ceEEEEEecCCCCCCceEccccCccCCCcceEEEEEEEEEecCCCCCCCCEEE
Confidence 9875 678999999999876543 55667789999999999999999999999999999999999999999999999
Q ss_pred EccCCCCCCCCCCCccEEEEEEEecCCCccccccceeeecccChhhhhcCceec
Q 019721 282 IRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSME 335 (336)
Q Consensus 282 l~G~G~~~~~~g~~GDL~v~i~v~~~~~f~r~g~dL~~~~~I~l~eALlG~~~~ 335 (336)
|+|+|++.. ++.+|||+|+|+|++|+.|+|+|+||+++++|+|+|||||++++
T Consensus 226 l~g~G~~~~-~~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~i~ 278 (369)
T PRK14288 226 LKNKGNEYE-KGKRGDLYLEARVKEDEHFKREGCDLFIEAPVFFTTIALGHTIK 278 (369)
T ss_pred EccCccCCC-CCCCCCEEEEEEEEECCCcEEeCCEEEEEEecCHHHHhcCCEEE
Confidence 999999854 57899999999999999999999999999999999999999874
No 8
>PRK14278 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=4.1e-65 Score=492.13 Aligned_cols=281 Identities=37% Similarity=0.628 Sum_probs=244.9
Q ss_pred ccCcceecccCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhchhcccccccccCCCCcCCcccCCCC
Q 019721 43 GTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSN 122 (336)
Q Consensus 43 ~~d~Y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~~~~~~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~g~~~~~~~~~~ 122 (336)
.+|||+||||+++||.+|||+|||+||++||||+|+++.|+++|++|++||+||+||++|++||+||++....+..+++.
T Consensus 2 ~~d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~~~~~~~~~~g~ 81 (378)
T PRK14278 2 ARDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPDEEAQEKFKEISVAYEVLSDPEKRRIVDLGGDPLESAGGGGGGF 81 (378)
T ss_pred CCCcceecCCCCCCCHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHHHHhchhhhhhhhhccCCccccccCCCCCC
Confidence 37999999999999999999999999999999999888899999999999999999999999999998643211000000
Q ss_pred CCCCC-CchhhhccccCCCCCCCCCCCCCCCcccccCCCCCCCcceEEEEeecceeeeeceEEEEEeeeeeeCCCCCCCC
Q 019721 123 TSQGV-DPFELYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTG 201 (336)
Q Consensus 123 ~~~~~-d~~~~f~~ffg~~~~~fg~~g~~~~~~~~~~~~~~~g~di~~~l~vslee~~~G~~~~v~~~~~~~C~~C~G~G 201 (336)
+ .++ +..++|++|||++ + .+ .+ ......++.|+.++|.|||+|+|+|+++++.+.+.+.|+.|+|+|
T Consensus 82 ~-~~f~~~~d~f~~ffgg~----g-~~--~~----~~~~~~~g~d~~~~l~vtLee~~~G~~~~i~~~~~~~C~~C~G~G 149 (378)
T PRK14278 82 G-GGFGGLGDVFEAFFGGG----A-AS--RG----PRGRVRPGSDSLLRMRLDLEECATGVTKQVTVDTAVLCDRCHGKG 149 (378)
T ss_pred C-cCcCchhHHHHHHhCCC----C-CC--CC----CccCCCCCCCeEEEEEEEHHHhcCCeEEEEEEEeeccCCCCcCcc
Confidence 0 111 2347888888742 0 00 00 011235689999999999999999999999999999999999999
Q ss_pred ccCCCCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCcceEEeeeeeecCCceEEeeeeEEEEEeCCCCCCCcEEE
Q 019721 202 AKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQ 281 (336)
Q Consensus 202 ~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~~~~~~~l~V~Ip~G~~~G~~i~ 281 (336)
........+|+.|+|+|.++..+++++|++++.++|+.|+|+|+++.+.|+.|.|.+++.+.++++|.||||+++|++|+
T Consensus 150 ~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~ 229 (378)
T PRK14278 150 TAGDSKPVTCDTCGGRGEVQTVQRSFLGQVMTSRPCPTCRGVGEVIPDPCHECAGDGRVRARREITVKIPAGVGDGMRIR 229 (378)
T ss_pred CCCCCCceecCCccCceEEEEEEeccceeEEEEEECCCCCccceeeCCCCCCCCCceeEecceEEEEEECCCCCCCcEEE
Confidence 99888889999999999999888888999988899999999999999999999999999999999999999999999999
Q ss_pred EccCCCCCCCCCCCccEEEEEEEecCCCccccccceeeecccChhhhhcCceec
Q 019721 282 IRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSME 335 (336)
Q Consensus 282 l~G~G~~~~~~g~~GDL~v~i~v~~~~~f~r~g~dL~~~~~I~l~eALlG~~~~ 335 (336)
|+|+|++...++.+|||+|+|++++|+.|+|+|+||++++.|+|++||+|++++
T Consensus 230 ~~g~G~~~~~~~~~GDL~v~i~~~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~ 283 (378)
T PRK14278 230 LAAQGEVGPGGGPAGDLYVEVHEQPHDVFVRDGDDLHCTVSVPMVDAALGTTVT 283 (378)
T ss_pred EccCcCCCCCCCCCCCEEEEEEECcCCCEEEcCCCEEEEEecCHHHHhcCCeEE
Confidence 999999876667789999999999999999999999999999999999999864
No 9
>PRK14282 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=3.7e-65 Score=491.60 Aligned_cols=283 Identities=37% Similarity=0.706 Sum_probs=244.3
Q ss_pred cccCcceecccCCCCCHHHHHHHHHHHHHHhCCCCCCC--cchHHHHHHHHHHHHHhchhcccccccccCCCCcCCcccC
Q 019721 42 AGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKS--PGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDG 119 (336)
Q Consensus 42 ~~~d~Y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~~--~~~~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~g~~~~~~~ 119 (336)
..+|||+||||+++||.+|||+|||+||++||||+|+. +.|+++|++|++||+||+||++|++||+||++++...+.+
T Consensus 2 ~~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~g~~~~~~~~~~ 81 (369)
T PRK14282 2 EKKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRAMYDRFGYVGEQPPYQE 81 (369)
T ss_pred CCCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhcChhhHHHHhhcCcccccccccc
Confidence 35899999999999999999999999999999999873 5688999999999999999999999999998876532111
Q ss_pred --CCCCC-C----CC-Cc--hhhhccccCCCCCCCCCCCCCCCcccccCCCCCCCcceEEEEeecceeeeeceEEEEEee
Q 019721 120 --LSNTS-Q----GV-DP--FELYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVS 189 (336)
Q Consensus 120 --~~~~~-~----~~-d~--~~~f~~ffg~~~~~fg~~g~~~~~~~~~~~~~~~g~di~~~l~vslee~~~G~~~~v~~~ 189 (336)
+++++ . .+ +. .++|++|||+.. +. +. ......++.|+.++|.|||+|+|+|+++++.+.
T Consensus 82 ~~~~g~~~~~~~~~~~~~~~~d~f~~~fgg~~------~~--~~---~~~~~~~g~di~~~l~~slee~~~G~~~~i~~~ 150 (369)
T PRK14282 82 TESGGGFFEDIFKDFENIFNRDIFDIFFGERR------TQ--EE---QREYARRGEDIRYEIEVTLSDLINGAEIPVEYD 150 (369)
T ss_pred CCCCCcccccccccccccccchhhhHhhcccC------Cc--cc---ccCCCCCCCCeEEEEEEEHHHhcCCeEEEEEee
Confidence 01110 0 01 11 156666665310 00 00 011235689999999999999999999999999
Q ss_pred eeeeCCCCCCCCccCCCCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCcceEEeeeeeecCCceEEeeeeEEEEE
Q 019721 190 CFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVV 269 (336)
Q Consensus 190 ~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~~~~~~~l~V~ 269 (336)
+.+.|+.|+|+|........+|+.|+|+|.++..+++++|++++..+|+.|+|+|+++.+.|..|.|.+++.+.++++|.
T Consensus 151 r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~ 230 (369)
T PRK14282 151 RYETCPHCGGTGVEPGSGYVTCPKCHGTGRIREERRSFFGVFVSERTCERCGGTGKIPGEYCHECGGSGRIRRRVRTTVK 230 (369)
T ss_pred ecccCCCCCccCCCCCCCCcCCCCCCCcCEEEEEEEccCcceEEEEECCCCCCcceeCCCCCCCCCCceeEEEEEEEEEE
Confidence 99999999999999888889999999999999999999999988899999999999999999999999999999999999
Q ss_pred eCCCCCCCcEEEEccCCCCCCCCCCCccEEEEEEEecCCCccccccceeeecccChhhhhcCceec
Q 019721 270 IPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSME 335 (336)
Q Consensus 270 Ip~G~~~G~~i~l~G~G~~~~~~g~~GDL~v~i~v~~~~~f~r~g~dL~~~~~I~l~eALlG~~~~ 335 (336)
||||+++|++|+|+|+|++...++.+|||+|+|++++|+.|+|+|+||++++.|+|.|||+|++++
T Consensus 231 Ip~G~~~G~~i~~~g~G~~~~~~~~~GDl~i~i~v~~h~~F~r~G~DL~~~~~Isl~eAl~G~~~~ 296 (369)
T PRK14282 231 IPAGVEDGTVLRITGGGNAGYYGGPYGDLYVIVRVRPDPRFKRSGSDLIYDVTIDYLQAILGTTVE 296 (369)
T ss_pred eCCCCCCCCEEEEecccCCCCCCCCCCCEEEEEEEecCCcEEEecCCEEEEEEeCHHHHhCCCEEE
Confidence 999999999999999999876677889999999999999999999999999999999999999874
No 10
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=100.00 E-value=2.1e-65 Score=497.63 Aligned_cols=288 Identities=32% Similarity=0.568 Sum_probs=241.7
Q ss_pred eccccccCCCCcccccccccccccCcceecccCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhchhc
Q 019721 21 SFKWNYCSGNNRSHRRGMIRAAGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDE 100 (336)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~d~Y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~~~~~~~~f~~i~~Ay~vL~d~~ 100 (336)
+++|+.-++-.+.|...--.+..+|||+||||+++||.+|||+|||+||++||||+|++ .++|++|++||+||+||+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~~---~e~F~~i~~AYevLsD~~ 81 (421)
T PTZ00037 5 GFPFDGMPGGGFDGGRRKREVDNEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGD---PEKFKEISRAYEVLSDPE 81 (421)
T ss_pred cCCcccccCCCCCCCcccccccchhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCch---HHHHHHHHHHHHHhccHH
Confidence 44675444443332111111236899999999999999999999999999999999853 589999999999999999
Q ss_pred ccccccccCCCCcCCcccCCCCCCCCCCchhhhccccCCCCCCCCCCCCCCCcccccCCCCCCCcceEEEEeecceeeee
Q 019721 101 KRSVYDRFGEAGITGEYDGLSNTSQGVDPFELYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIF 180 (336)
Q Consensus 101 ~r~~YD~~G~~g~~~~~~~~~~~~~~~d~~~~f~~ffg~~~~~fg~~g~~~~~~~~~~~~~~~g~di~~~l~vslee~~~ 180 (336)
+|++||+||++++.++. .+.++.++|+.|||++. . .....++.|+.+.|.|||+|+|+
T Consensus 82 kR~~YD~~G~~~~~~~~-------~~~d~~d~f~~~Fggg~-------~--------~~~~~rg~di~~~l~vtLee~~~ 139 (421)
T PTZ00037 82 KRKIYDEYGEEGLEGGE-------QPADASDLFDLIFGGGR-------K--------PGGKKRGEDIVSHLKVTLEQIYN 139 (421)
T ss_pred HHHHHhhhcchhcccCC-------CCcchhhhHHHhhcccc-------c--------cccccCCCCEEEEeeeeHHHHhC
Confidence 99999999998765321 12356688888886410 0 01234689999999999999999
Q ss_pred ceEEEEEeeeeeeCCCCCCCCccCCCCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCcceEEe--eeeeecCCce
Q 019721 181 GGQRGIEVSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIII--DHCRRCGGNG 258 (336)
Q Consensus 181 G~~~~v~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~~~--~~C~~C~g~g 258 (336)
|+++++.+.+.+.|+.|+|+|.... ...+|+.|+|+|.++...++++.++++..+|+.|+|+|+++. +.|+.|+|.+
T Consensus 140 G~~~~i~~~r~~~C~~C~G~G~~~~-~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~i~~~~~C~~C~G~g 218 (421)
T PTZ00037 140 GAMRKLAINKDVICANCEGHGGPKD-AFVDCKLCNGQGIRVQIRQMGSMIHQTQSTCNSCNGQGKIIPESKKCKNCSGKG 218 (421)
T ss_pred CCceEEEeeccccccccCCCCCCCC-CCccCCCCCCCCeEEEEEeecceeeEEEEeCCCCCCcceeccccccCCcCCCcc
Confidence 9999999999999999999998654 578999999999987776665533344589999999999985 8999999999
Q ss_pred EEeeeeEEEEEeCCCCCCCcEEEEccCCCCCCCCCCCccEEEEEEEecCCCccccccceeeecccChhhhhcCceec
Q 019721 259 EVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSME 335 (336)
Q Consensus 259 ~~~~~~~l~V~Ip~G~~~G~~i~l~G~G~~~~~~g~~GDL~v~i~v~~~~~f~r~g~dL~~~~~I~l~eALlG~~~~ 335 (336)
++.+.++++|.||||+.+|++|+|+|+|++.. ++.+|||||+|++++|+.|+|+|+||++++.|+|+|||||++++
T Consensus 219 ~v~~~~~l~V~Ip~G~~dG~~I~~~G~Gd~~~-~~~pGDLiv~I~~~ph~~F~R~G~DL~~~~~Isl~eAllG~~i~ 294 (421)
T PTZ00037 219 VKKTRKILEVNIDKGVPNQHKITFHGEADEKP-NEIPGNVVFILNEKPHDTFKREGGDLFITKKISLYEALTGFVFY 294 (421)
T ss_pred eeeeeeEEEEeeCCCCCCCcEEEEecccCCCC-CCCCCcEEEEEEecCCCCcEEeCCeEEEEEeCCHHHHhcCCEEE
Confidence 99999999999999999999999999999854 57899999999999999999999999999999999999999874
No 11
>PRK14286 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=6.8e-65 Score=489.62 Aligned_cols=281 Identities=38% Similarity=0.761 Sum_probs=240.6
Q ss_pred ccCcceecccCCCCCHHHHHHHHHHHHHHhCCCCCC-CcchHHHHHHHHHHHHHhchhcccccccccCCCCcCCcccCCC
Q 019721 43 GTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINK-SPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLS 121 (336)
Q Consensus 43 ~~d~Y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~-~~~~~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~g~~~~~~~~~ 121 (336)
..|||++|||+++||.+|||+|||+||++||||+|+ +++|+++|++|++||+||+||++|++||+||++++..+..+.+
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~~~~~~~~ 82 (372)
T PRK14286 3 ERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQAYDQFGKAGVNAGAGGFG 82 (372)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHHhCchhhccccCCCC
Confidence 579999999999999999999999999999999997 5678999999999999999999999999999988753211111
Q ss_pred -CCCCC-----CCchhhhccccCCCCCCCCCCCCCCCcccccCCCCCCCcceEEEEeecceeeeeceEEEEEeeeeeeCC
Q 019721 122 -NTSQG-----VDPFELYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCD 195 (336)
Q Consensus 122 -~~~~~-----~d~~~~f~~ffg~~~~~fg~~g~~~~~~~~~~~~~~~g~di~~~l~vslee~~~G~~~~v~~~~~~~C~ 195 (336)
+++.+ .+..|+|++|||+..+ + +..++ ......++.|+.++|.|||+|+|+|+++++.+.+.+.|+
T Consensus 83 ~~~~~~~~~~~~~~~d~f~~ffgg~~~---~-~~~~~----~~~~~~~g~di~~~l~vtLee~~~G~~k~i~~~r~~~C~ 154 (372)
T PRK14286 83 QGAYTDFSDIFGDFGDIFGDFFGGGRG---G-GSGGG----RRSGPQRGSDLRYNLEVSLEDAALGREYKIEIPRLESCV 154 (372)
T ss_pred CCCcccccccccchhhHHHHhhCCCcc---C-CCccc----ccCCCCCCCCeeEEEEEEHHHHhCCeeEEEEeeccccCC
Confidence 11111 1334788988874211 0 00000 011235789999999999999999999999999999999
Q ss_pred CCCCCCccCCCCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCcceEEeeeeeecCCceEEeeeeEEEEEeCCCCC
Q 019721 196 SCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVS 275 (336)
Q Consensus 196 ~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~~~~~~~l~V~Ip~G~~ 275 (336)
.|+|+|........+|+.|+|+|.++... |++++.++|+.|+|+|+++.+.|..|+|.+++.+.++++|.||||++
T Consensus 155 ~C~G~G~~~~~~~~~C~~C~G~G~v~~~~----G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~ 230 (372)
T PRK14286 155 DCNGSGASKGSSPTTCPDCGGSGQIRRTQ----GFFSVATTCPTCRGKGTVISNPCKTCGGQGLQEKRRTINIKIPPGVE 230 (372)
T ss_pred CCcCCCcCCCCCCccCCCCcCeEEEEEEe----ceEEEEEeCCCCCceeeEecccCCCCCCCcEEecceEEEEEECCCCC
Confidence 99999999888889999999999876643 66777789999999999999999999999999999999999999999
Q ss_pred CCcEEEEccCCCCCCCCCCCccEEEEEEEecCCCccccccceeeecccChhhhhcCceec
Q 019721 276 NGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSME 335 (336)
Q Consensus 276 ~G~~i~l~G~G~~~~~~g~~GDL~v~i~v~~~~~f~r~g~dL~~~~~I~l~eALlG~~~~ 335 (336)
+|++|+|+|+|++...++.+|||||+|+|++|+.|+|+|+||++++.|+|+|||+|++++
T Consensus 231 ~G~~i~~~g~G~~~~~~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~ 290 (372)
T PRK14286 231 TGSRLKVSGEGEAGPNGGPHGDLYVVTHIKKHELFERQGNDLILVRKISLAQAILGAEIE 290 (372)
T ss_pred CCCEEEECCccccCCCCCCCceEEEEEEEccCCCEEEecCCEEEEEEECHHHHhCCCEEE
Confidence 999999999999976666789999999999999999999999999999999999999874
No 12
>PRK14277 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=9e-65 Score=491.26 Aligned_cols=286 Identities=42% Similarity=0.794 Sum_probs=247.0
Q ss_pred ccccCcceecccCCCCCHHHHHHHHHHHHHHhCCCCCC-CcchHHHHHHHHHHHHHhchhcccccccccCCCCcCCc-cc
Q 019721 41 AAGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINK-SPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGE-YD 118 (336)
Q Consensus 41 ~~~~d~Y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~-~~~~~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~g~~~~-~~ 118 (336)
+...|||+||||+++||.+|||+|||+||++||||+|+ ++.++++|++|++||+||+||.+|++||+||+++++.+ +.
T Consensus 2 ~~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~~~~~~~~ 81 (386)
T PRK14277 2 AAKKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKRAQYDQFGHAAFDPGGFG 81 (386)
T ss_pred CCCCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHhhccccccccccc
Confidence 34689999999999999999999999999999999997 46789999999999999999999999999999877532 11
Q ss_pred CCC---CCC--CC-----CCchhhhccccCCCCCCCCCCCCCCCcccccCCCCCCCcceEEEEeecceeeeeceEEEEEe
Q 019721 119 GLS---NTS--QG-----VDPFELYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEV 188 (336)
Q Consensus 119 ~~~---~~~--~~-----~d~~~~f~~ffg~~~~~fg~~g~~~~~~~~~~~~~~~g~di~~~l~vslee~~~G~~~~v~~ 188 (336)
+++ +++ .+ .+..++|++||++ +|++.+. . ......++.|+.+.|.|||+|+|+|+++++.+
T Consensus 82 ~~~~~~~g~~~~~~~~~~~~~~d~f~~~F~~---~fgg~~~---~---~~~~~~kg~di~~~l~vtLee~~~G~~~~v~~ 152 (386)
T PRK14277 82 QGGFGQGGFGGGGFDFDFGGFGDIFEDIFGD---FFGTGRR---R---AETGPQKGADIRYDLELTFEEAAFGTEKEIEV 152 (386)
T ss_pred cCCcCCCCccccCccccccchhHHHHHhhcc---cccCCCc---C---CCCCCCCCCCEEEEEEEEHHHHhCCeEEEEEE
Confidence 100 110 00 1123678888864 2332100 0 01123478999999999999999999999999
Q ss_pred eeeeeCCCCCCCCccCCCCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCcceEEeeeeeecCCceEEeeeeEEEE
Q 019721 189 SCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKV 268 (336)
Q Consensus 189 ~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~~~~~~~l~V 268 (336)
.+.+.|+.|+|+|........+|+.|+|+|.++..+++++|++++..+|+.|.|+|+++.+.|..|+|.+++.+.++++|
T Consensus 153 ~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V 232 (386)
T PRK14277 153 ERFEKCDVCKGSGAKPGSKPVTCPVCHGTGQVRTRQNTPFGRIVNIRTCDRCHGEGKIITDPCNKCGGTGRIRRRRKIKV 232 (386)
T ss_pred EeeccCCCCCCCCcCCCCCCccCCCCCCEEEEEEEEeccCceEEEEEECCCCCcceeeccCCCCCCCCCcEEeeeeEEEE
Confidence 99999999999999988888999999999999998999999998889999999999999999999999999999999999
Q ss_pred EeCCCCCCCcEEEEccCCCCCCCCCCCccEEEEEEEecCCCccccccceeeecccChhhhhcCceec
Q 019721 269 VIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSME 335 (336)
Q Consensus 269 ~Ip~G~~~G~~i~l~G~G~~~~~~g~~GDL~v~i~v~~~~~f~r~g~dL~~~~~I~l~eALlG~~~~ 335 (336)
.||||+++|++|+|+|+|++...++.+|||+|+|+|++|+.|+|+|+||++++.|+|+|||+|++++
T Consensus 233 ~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~ 299 (386)
T PRK14277 233 NIPAGIDDGQMITLRGEGEPGIKGGPNGDLYIVIKVKPHPLFKREGYNVYLEMPITFTDAALGGEIE 299 (386)
T ss_pred ecCCCccCCcEEEEccccccCCCCCCCccEEEEEEEecCCCeEEecCCEEEEEEcCHHHHhCCCEEE
Confidence 9999999999999999999866667789999999999999999999999999999999999999874
No 13
>PRK14297 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=3.7e-64 Score=486.35 Aligned_cols=283 Identities=39% Similarity=0.765 Sum_probs=246.3
Q ss_pred ccCcceecccCCCCCHHHHHHHHHHHHHHhCCCCCC-CcchHHHHHHHHHHHHHhchhcccccccccCCCCcCCcccCCC
Q 019721 43 GTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINK-SPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLS 121 (336)
Q Consensus 43 ~~d~Y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~-~~~~~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~g~~~~~~~~~ 121 (336)
..|||++|||+++||.+|||+|||+||++||||+|+ ++.|+++|++|++||+||+||.+|++||+||+++++.+.+.+.
T Consensus 3 ~~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~G~~~~~~~~~~~~ 82 (380)
T PRK14297 3 SKDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKKAQYDQFGTADFNGAGGFGS 82 (380)
T ss_pred CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcCHhhhCchhhcCcccccccCCCCC
Confidence 479999999999999999999999999999999997 4678999999999999999999999999999988753211000
Q ss_pred CCCCC------CCchhhhccccCCCCCCCCCCCCCCCcccccCCCCCCCcceEEEEeecceeeeeceEEEEEeeeeeeCC
Q 019721 122 NTSQG------VDPFELYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCD 195 (336)
Q Consensus 122 ~~~~~------~d~~~~f~~ffg~~~~~fg~~g~~~~~~~~~~~~~~~g~di~~~l~vslee~~~G~~~~v~~~~~~~C~ 195 (336)
+++.+ .+..|+|++|||+. +++.+ .. .....++.|+.++|.|||+|+|+|+++++.+.+.+.|+
T Consensus 83 ~~~~~~~~~~~~~~~d~f~~~fgg~---~g~~~--~~-----~~~~~kg~di~~~l~vsLee~~~G~~~~i~~~r~~~C~ 152 (380)
T PRK14297 83 GGFGGFDFSDMGGFGDIFDSFFGGG---FGSSS--RR-----RNGPQRGADIEYTINLTFEEAVFGVEKEISVTRNENCE 152 (380)
T ss_pred CCCCCcCcccccchhHHHHHHhccC---ccccc--cc-----cCCCCCCCCEEEEEEEEHHHhcCCeEEEEEeeeeccCC
Confidence 11111 12348899998741 11100 00 11234689999999999999999999999999999999
Q ss_pred CCCCCCccCCCCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCcceEEeeeeeecCCceEEeeeeEEEEEeCCCCC
Q 019721 196 SCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVS 275 (336)
Q Consensus 196 ~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~~~~~~~l~V~Ip~G~~ 275 (336)
.|+|+|........+|+.|+|+|.++..+++++|++++..+|+.|+|+|.++...|..|.|.+++.+.++++|.||||++
T Consensus 153 ~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~i~V~Ip~G~~ 232 (380)
T PRK14297 153 TCNGTGAKPGTSPKTCDKCGGTGQIRVQRNTPLGSFVSTTTCDKCGGSGKVIEDPCNKCHGKGKVRKNRKIKVNVPAGVD 232 (380)
T ss_pred CcccccccCCCcCccCCCccCeEEEEEEEEcCCceeEEEEeCCCCCCCceEcCCCCCCCCCCeEEEeEeEEEEEeCCCCC
Confidence 99999999888889999999999999888899999888899999999999999999999999999999999999999999
Q ss_pred CCcEEEEccCCCCCCCCCCCccEEEEEEEecCCCccccccceeeecccChhhhhcCceec
Q 019721 276 NGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSME 335 (336)
Q Consensus 276 ~G~~i~l~G~G~~~~~~g~~GDL~v~i~v~~~~~f~r~g~dL~~~~~I~l~eALlG~~~~ 335 (336)
+|++|+|+|+|++...++.+|||||+|+|++|+.|+|+|+||++++.|+|+|||+|++++
T Consensus 233 ~G~~I~l~g~G~~~~~~~~~GDL~v~v~v~~h~~f~R~G~DL~~~~~Isl~eAl~G~~~~ 292 (380)
T PRK14297 233 TGNVIPLRGQGEHGKNGGPTGDLYINIRVAPHKTFKRKGFDIYIDKHISFAKAALGTEIK 292 (380)
T ss_pred CCcEEEEecCccCCCCCCCCccEEEEEEEcCCCCEEEeCCCEEEEEEeCHHHHhCCCcEE
Confidence 999999999999876667789999999999999999999999999999999999999874
No 14
>PRK14285 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=4.1e-64 Score=483.05 Aligned_cols=277 Identities=34% Similarity=0.699 Sum_probs=238.8
Q ss_pred ccCcceecccCCCCCHHHHHHHHHHHHHHhCCCCCC-CcchHHHHHHHHHHHHHhchhcccccccccCCCCcCCccc--C
Q 019721 43 GTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINK-SPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYD--G 119 (336)
Q Consensus 43 ~~d~Y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~-~~~~~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~g~~~~~~--~ 119 (336)
.+|||++|||+++||.+|||+|||+||++||||+|+ ++.++++|++|++||+||+||++|+.||+||+++++.+.+ +
T Consensus 2 ~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yd~~g~~~~~~~~~~~~ 81 (365)
T PRK14285 2 KRDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNKRAQYDRFGHTAFEGGGGFEG 81 (365)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHcCcchhHHHHhcCcchhccCCCccc
Confidence 479999999999999999999999999999999997 4678899999999999999999999999999987753211 1
Q ss_pred CCCCCCC-----CCchhhhccccCCCCCCCCCCCCCCCcccccCCCCCCCcceEEEEeecceeeeeceEEEEEeeeeeeC
Q 019721 120 LSNTSQG-----VDPFELYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCFETC 194 (336)
Q Consensus 120 ~~~~~~~-----~d~~~~f~~ffg~~~~~fg~~g~~~~~~~~~~~~~~~g~di~~~l~vslee~~~G~~~~v~~~~~~~C 194 (336)
..+++.+ .+..++|++|||+.. +... .....++.|+.++|.|||+|+|+|+++++.+++.+.|
T Consensus 82 ~~~g~~~~~~~~~~~~d~f~~~fgg~~------~~~~------~~~~~~g~di~~~l~vtlee~~~G~~~~i~~~r~~~C 149 (365)
T PRK14285 82 FSGGFSGFSDIFEDFGDIFDSFFTGNR------GQDK------NRKHEKGQDLTYQIEISLEDAYLGYKNNINITRNMLC 149 (365)
T ss_pred cCCCccccccccccHHHHHHHhhcCCc------CCCC------CcCCCCCCCEEEEEEEEHHHhhCCeEEEEEeeecccC
Confidence 0011111 123377888886411 0000 1123478999999999999999999999999999999
Q ss_pred CCCCCCCccCCCCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCcceEEeeeeeecCCceEEeeeeEEEEEeCCCC
Q 019721 195 DSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGV 274 (336)
Q Consensus 195 ~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~~~~~~~l~V~Ip~G~ 274 (336)
+.|+|+|.........|+.|+|+|.++. .+|++++..+|+.|.|+|+++.+.|..|.|.+++.+.++++|.||||+
T Consensus 150 ~~C~G~G~~~~~~~~~C~~C~G~G~~~~----~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~ 225 (365)
T PRK14285 150 ESCLGKKSEKGTSPSICNMCNGSGRVMQ----GGGFFRVTTTCPKCYGNGKIISNPCKSCKGKGSLKKKETIELKIPAGI 225 (365)
T ss_pred CCCCCcccCCCCCCccCCCccCceeEEe----cCceeEEeeecCCCCCcccccCCCCCCCCCCCEEeccEEEEEEECCCC
Confidence 9999999998888899999999998764 357777778999999999999999999999999999999999999999
Q ss_pred CCCcEEEEccCCCCCCCCCCCccEEEEEEEecCCCccccccceeeecccChhhhhcCceec
Q 019721 275 SNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSME 335 (336)
Q Consensus 275 ~~G~~i~l~G~G~~~~~~g~~GDL~v~i~v~~~~~f~r~g~dL~~~~~I~l~eALlG~~~~ 335 (336)
++|++|+|+|+|++...++.+|||||+|++++|+.|+|+|+||++++.|+|.|||+|++++
T Consensus 226 ~~G~~i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~f~R~G~dL~~~~~Isl~eAl~G~~~~ 286 (365)
T PRK14285 226 DDNQQIKMRGKGSVNPDNQQYGDLYIKILIKPHKIFKRNGKDLYATLPISFTQAALGKEIK 286 (365)
T ss_pred CCCCEEEEeeccccCCCCCCCCCEEEEEEEecCCCeEEeccceEEEEecCHHHHhCCCEEE
Confidence 9999999999999976667789999999999999999999999999999999999999875
No 15
>PRK14279 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1e-63 Score=484.13 Aligned_cols=287 Identities=34% Similarity=0.631 Sum_probs=233.0
Q ss_pred ccCcceecccCCCCCHHHHHHHHHHHHHHhCCCCCC-CcchHHHHHHHHHHHHHhchhcccccccccCCCCcCCcccC--
Q 019721 43 GTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINK-SPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDG-- 119 (336)
Q Consensus 43 ~~d~Y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~-~~~~~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~g~~~~~~~-- 119 (336)
.+|||+||||+++|+.+|||+|||+||++||||+|+ ++.|+++|++|++||+||+||+||++||+||++++..++.+
T Consensus 8 ~~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsD~~KR~~YD~~G~~~~~~g~~~~~ 87 (392)
T PRK14279 8 EKDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKRKEYDETRRLFAGGGFGGRR 87 (392)
T ss_pred ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhcchhhhhHHHHhhhhcccccccccc
Confidence 589999999999999999999999999999999997 56789999999999999999999999999997533211110
Q ss_pred ----CC-CCC------CCCCchhhhccccCCC----CCCCCCC-CCCCCcccccCCCCCCCcceEEEEeecceeeeeceE
Q 019721 120 ----LS-NTS------QGVDPFELYSAFFGGS----DGLFGGV-GEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQ 183 (336)
Q Consensus 120 ----~~-~~~------~~~d~~~~f~~ffg~~----~~~fg~~-g~~~~~~~~~~~~~~~g~di~~~l~vslee~~~G~~ 183 (336)
++ +++ .+.|..++|+.++++. ..+|+++ +..++.. ......++.|+.++|.|||+|+|+|++
T Consensus 88 ~~~~~~~~g~~~~~~~~~~d~~~~f~~~~~~~~~~f~d~f~~~fg~~~~~~--~~~~~~~g~di~~~l~ltLee~~~G~~ 165 (392)
T PRK14279 88 FDGGGGFGGFGTGGDGAEFNLNDLFDAAGRGGGGGIGDLFGGLFNRGGGSA--RPSRPRRGNDLETETTLDFVEAAKGVT 165 (392)
T ss_pred ccCCCCCCCccccccccCcChhhhhcccccccccchhhhhhhhhcCCCccc--ccCCCCCCCCeEEEEEEEHHHHhCCeE
Confidence 00 010 0122223332111100 0011110 0000000 011235789999999999999999999
Q ss_pred EEEEeeeeeeCCCCCCCCccCCCCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCcceEEeeeeeecCCceEEeee
Q 019721 184 RGIEVSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSK 263 (336)
Q Consensus 184 ~~v~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~~~~~ 263 (336)
+++.+.+.+.|+.|+|+|........+|+.|+|+|.++..+ +++++..+|+.|+|+|+++.+.|..|.|.+++.+.
T Consensus 166 ~~v~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~----g~~~~~~~C~~C~G~G~~i~~~C~~C~G~g~v~~~ 241 (392)
T PRK14279 166 MPLRLTSPAPCTTCHGSGARPGTSPKVCPTCNGSGVISRNQ----GAFGFSEPCTDCRGTGSIIEDPCEECKGTGVTTRT 241 (392)
T ss_pred EEEeeeccccCCCCccccccCCCCCCCCCCCcceEEEEEEe----cceEEEEecCCCCceeEEeCCcCCCCCCCeEEEEe
Confidence 99999999999999999999888889999999999876653 55566799999999999999999999999999999
Q ss_pred eEEEEEeCCCCCCCcEEEEccCCCCCCCCCCCccEEEEEEEecCCCccccccceeeecccChhhhhcCceec
Q 019721 264 RSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSME 335 (336)
Q Consensus 264 ~~l~V~Ip~G~~~G~~i~l~G~G~~~~~~g~~GDL~v~i~v~~~~~f~r~g~dL~~~~~I~l~eALlG~~~~ 335 (336)
++++|.||||+++|++|+|+|+|++..+++.+|||+|+|++++|+.|+|+|+||++++.|+|.+||+|++++
T Consensus 242 ~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~ 313 (392)
T PRK14279 242 RTINVRIPPGVEDGQRIRLAGQGEAGLRGAPSGDLYVTVHVRPDKVFGRDGDDLTVTVPVSFTELALGSTLS 313 (392)
T ss_pred eeeEEEeCCCCCCCcEEEEeCCccCCCCCCCCCCEEEEEEEecCCcceeecCcEEEEEEccHHHHcCCceEE
Confidence 999999999999999999999999977667789999999999999999999999999999999999999864
No 16
>PRK14284 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.2e-63 Score=484.23 Aligned_cols=280 Identities=39% Similarity=0.710 Sum_probs=235.5
Q ss_pred cCcceecccCCCCCHHHHHHHHHHHHHHhCCCCCC-CcchHHHHHHHHHHHHHhchhcccccccccCCCCcCCcccC-CC
Q 019721 44 TDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINK-SPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDG-LS 121 (336)
Q Consensus 44 ~d~Y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~-~~~~~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~g~~~~~~~-~~ 121 (336)
.|||+||||+++||.+|||+|||+||++||||+|+ ++.++++|++|++||+||+|+++|++||+||++++..+..+ ++
T Consensus 1 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~~g~~~~~~ 80 (391)
T PRK14284 1 MDYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRESYDRYGKDGPFAGAGGFGG 80 (391)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHhccccccccccCCcCC
Confidence 48999999999999999999999999999999998 46789999999999999999999999999999876322110 00
Q ss_pred CCCCC-CCc---------------hhhhccccCCCCCCCCCCCCCCCcccccCCCCCCCcceEEEEeecceeeeeceEEE
Q 019721 122 NTSQG-VDP---------------FELYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRG 185 (336)
Q Consensus 122 ~~~~~-~d~---------------~~~f~~ffg~~~~~fg~~g~~~~~~~~~~~~~~~g~di~~~l~vslee~~~G~~~~ 185 (336)
+++.+ .++ .++|++||++..+.|++ .. ......++.|+.++|.|||||+|+|++++
T Consensus 81 ~g~~~~~~~~~~~~~~f~~~~~~~~d~f~~~fgg~g~~~~~-----~~---~~~~~~~g~d~~~~l~vslee~~~G~~~~ 152 (391)
T PRK14284 81 AGMGNMEDALRTFMGAFGGEFGGGGSFFEGLFGGLGEAFGM-----RG---GPAGARQGASKKVHITLSFEEAAKGVEKE 152 (391)
T ss_pred CCcCcccchhhhccccccccccccccchhhhccCccccccc-----cc---cCCCcCCCCCeEEEEEEEHHHHhCCeeEE
Confidence 11100 011 24455555431100110 00 01123468999999999999999999999
Q ss_pred EEeeeeeeCCCCCCCCccCCCCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCcceEEeeeeeecCCceEEeeeeE
Q 019721 186 IEVSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRS 265 (336)
Q Consensus 186 v~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~~~~~~~ 265 (336)
+.+.+.+.|+.|+|+|........+|+.|+|+|.++..+ |++++..+|+.|+|+|+++.+.|+.|.|.+++.+.++
T Consensus 153 i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~----G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~ 228 (391)
T PRK14284 153 LLVSGYKSCDACSGSGANSSQGIKVCDRCKGSGQVVQSR----GFFSMASTCPECGGEGRVITDPCSVCRGQGRIKDKRS 228 (391)
T ss_pred EEEeeeccCCCCcccccCCCCCCeecCccCCeeEEEEEe----ceEEEEEECCCCCCCCcccCCcCCCCCCcceecceEE
Confidence 999999999999999999888889999999999877543 6667778999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCcEEEEccCCCCCCCCCCCccEEEEEEEecCCCccccccceeeecccChhhhhcCceec
Q 019721 266 MKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSME 335 (336)
Q Consensus 266 l~V~Ip~G~~~G~~i~l~G~G~~~~~~g~~GDL~v~i~v~~~~~f~r~g~dL~~~~~I~l~eALlG~~~~ 335 (336)
++|.||||+++|++|+|+|+|++...++.+|||||+|++++|+.|+|+|+||++++.|+|+|||+|++++
T Consensus 229 l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~ 298 (391)
T PRK14284 229 VHVHIPAGVDSGMRLKMEGYGDAGQNGAPAGDLYVFIDVEPHPVFERRGDDLILELPIGFVDAALGMKKE 298 (391)
T ss_pred EEEEECCCCCCCCEEEEeccccCCCCCCCCCCEEEEEEEecCCCceeecCCEEEEEEecHHHHhCCCeEE
Confidence 9999999999999999999999987778899999999999999999999999999999999999999874
No 17
>PRK14294 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=5.7e-63 Score=475.86 Aligned_cols=280 Identities=39% Similarity=0.723 Sum_probs=238.6
Q ss_pred cccCcceecccCCCCCHHHHHHHHHHHHHHhCCCCCC-CcchHHHHHHHHHHHHHhchhcccccccccCCCCcCCcccCC
Q 019721 42 AGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINK-SPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGL 120 (336)
Q Consensus 42 ~~~d~Y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~-~~~~~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~g~~~~~~~~ 120 (336)
..+|||+||||+++||.+|||+|||+||++||||+++ ++.++++|++|++||+||+||.+|++||+||+++++.+..++
T Consensus 2 ~~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~~f~~~~~Ay~vL~d~~~r~~yD~~G~~g~~~~~~~~ 81 (366)
T PRK14294 2 VKRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKRGIYDQYGHEGLSGTGFSG 81 (366)
T ss_pred CCCChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHhhccccccCCCCCC
Confidence 3589999999999999999999999999999999997 467899999999999999999999999999998875321110
Q ss_pred CCCCC-CC-CchhhhccccCCCCCCCCCCCCCCCcccccCCCCCCCcceEEEEeecceeeeeceEEEEEeeeeeeCCCCC
Q 019721 121 SNTSQ-GV-DPFELYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCG 198 (336)
Q Consensus 121 ~~~~~-~~-d~~~~f~~ffg~~~~~fg~~g~~~~~~~~~~~~~~~g~di~~~l~vslee~~~G~~~~v~~~~~~~C~~C~ 198 (336)
.+++. .+ +..|+|++|||. ++.+. +. ......++.|+.++|.|||+|+|+|+++++.+.+.+.|+.|+
T Consensus 82 ~~~~~~~~~~~~d~f~~~fg~-----g~~~~--~~---~~~~~~~g~d~~~~l~lslee~~~G~~~~i~~~r~~~C~~C~ 151 (366)
T PRK14294 82 FSGFDDIFSSFGDIFEDFFGF-----GGGRR--GR---SRTAVRAGADLRYDLTLPFLEAAFGTEKEIRIQKLETCEECH 151 (366)
T ss_pred cCccccchhhhhhhHHHhhcc-----CCCcC--Cc---ccCCCCCCCCceEEEEeeHHHhcCCeEEEEEeeecccCCCCC
Confidence 01111 01 123677777761 10000 00 001234689999999999999999999999999999999999
Q ss_pred CCCccCCCCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCcceEEeeeeeecCCceEEeeeeEEEEEeCCCCCCCc
Q 019721 199 GTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGA 278 (336)
Q Consensus 199 G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~~~~~~~l~V~Ip~G~~~G~ 278 (336)
|+|........+|+.|+|+|.++... |++++..+|+.|+|+|+++.+.|+.|.|.+++.+.++++|.||||+++|+
T Consensus 152 G~G~~~~~~~~~C~~C~G~G~~~~~~----G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~ 227 (366)
T PRK14294 152 GSGCEPGTSPTTCPQCGGSGQVTQSQ----GFFSIRTTCPRCRGMGKVIVSPCKTCHGQGRVRVSKTVQVKIPAGVDTGS 227 (366)
T ss_pred CccccCCCCcccCCCcCCeEEEEEEe----eeEEEEeeCCCCCCcCeecCcCCCCCCCceEeecceeEEEecCCCCcCCc
Confidence 99999888889999999999876532 66666789999999999999999999999999999999999999999999
Q ss_pred EEEEccCCCCCCCCCCCccEEEEEEEecCCCccccccceeeecccChhhhhcCceec
Q 019721 279 TMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSME 335 (336)
Q Consensus 279 ~i~l~G~G~~~~~~g~~GDL~v~i~v~~~~~f~r~g~dL~~~~~I~l~eALlG~~~~ 335 (336)
+|+|+|+|++...++.+|||+|+|++++|+.|+|+|+||++++.|+|.|||+|++++
T Consensus 228 ~i~~~g~G~~~~~~~~~GDl~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~ 284 (366)
T PRK14294 228 RLRLRGEGEAGVRGGPPGDLYVFLTVEPHEFFERDGNDVHCKVPISFVQAALGAQIE 284 (366)
T ss_pred EEEEccCccCCCCCCCCCcEEEEEEEccCCcceecCCCEEEEEEeCHHHHhCCCeEE
Confidence 999999999876677899999999999999999999999999999999999999874
No 18
>PRK14301 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=4.7e-63 Score=477.03 Aligned_cols=276 Identities=39% Similarity=0.749 Sum_probs=236.7
Q ss_pred ccCcceecccCCCCCHHHHHHHHHHHHHHhCCCCCC-CcchHHHHHHHHHHHHHhchhcccccccccCCCCcCCcccCCC
Q 019721 43 GTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINK-SPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLS 121 (336)
Q Consensus 43 ~~d~Y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~-~~~~~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~g~~~~~~~~~ 121 (336)
..|||++|||+++||.+|||+|||+||++||||+|+ +++++++|++|++||+||+||.+|+.||+||+++++++.. +
T Consensus 3 ~~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~g~~g~~~~~~--~ 80 (373)
T PRK14301 3 QRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKRARYDRFGHAGVNGNGG--F 80 (373)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCCChHHHHHHHHHHHHHHHhcchhhhhhhhhccccccccCCC--C
Confidence 579999999999999999999999999999999997 4678899999999999999999999999999988753211 1
Q ss_pred CCCC-CCCch----hhhccccCCCCCCCCCCCCCCCcccccCCCCCCCcceEEEEeecceeeeeceEEEEEeeeeeeCCC
Q 019721 122 NTSQ-GVDPF----ELYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCDS 196 (336)
Q Consensus 122 ~~~~-~~d~~----~~f~~ffg~~~~~fg~~g~~~~~~~~~~~~~~~g~di~~~l~vslee~~~G~~~~v~~~~~~~C~~ 196 (336)
+++. ..+++ ++|++|||++ +.+. . ......++.|+.++|.|||+|+|+|+++++.+.+.+.|+.
T Consensus 81 ~g~~~~~~~~~~f~d~f~~~fg~g-----~~~~---~---~~~~~~~g~di~~~l~vtLee~~~G~~k~i~~~r~~~C~~ 149 (373)
T PRK14301 81 GGFSSAEDIFSHFSDIFGDLFGFS-----GGGS---R---RGPRPQAGSDLRYNLTVSFRQAAKGDEVTLRIPKNVTCDD 149 (373)
T ss_pred CCcccccccccchHHHHHHHhhcc-----Cccc---c---cCCCCCCCCCEEEEEeccHHHHhCCceEEEEeeecccCCC
Confidence 1111 11222 4555555421 1000 0 0112357899999999999999999999999999999999
Q ss_pred CCCCCccCCCCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCcceEEeeeeeecCCceEEeeeeEEEEEeCCCCCC
Q 019721 197 CGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSN 276 (336)
Q Consensus 197 C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~~~~~~~l~V~Ip~G~~~ 276 (336)
|+|+|........+|+.|+|+|.+.... |++++..+|+.|+|+|+++...|+.|.|.+++.+.++++|.||||+++
T Consensus 150 C~G~G~~~~~~~~~C~~C~G~G~v~~~~----G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~ 225 (373)
T PRK14301 150 CGGSGAAPGTSPETCRHCGGSGQVRQSQ----GFFQIAVPCPVCRGEGRVITHPCPKCKGSGIVQQTRELKVRIPAGVDT 225 (373)
T ss_pred CCCcccCCCCCCcccCCccCeeEEEEEe----eeEEEEEeCCCCCceeeecCCCCCCCCCCceeccceEEEEEeCCCCcC
Confidence 9999999888889999999999876543 667777999999999999999999999999999999999999999999
Q ss_pred CcEEEEccCCCCCCCCCCCccEEEEEEEecCCCccccccceeeecccChhhhhcCceec
Q 019721 277 GATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSME 335 (336)
Q Consensus 277 G~~i~l~G~G~~~~~~g~~GDL~v~i~v~~~~~f~r~g~dL~~~~~I~l~eALlG~~~~ 335 (336)
|++|+|+|+|++...++.+|||||+|+|++|+.|+|+|+||++++.|+|.+||+|++++
T Consensus 226 G~~i~~~g~G~~~~~~~~~GDLiv~i~v~~h~~f~r~G~DL~~~~~Isl~eAl~G~~~~ 284 (373)
T PRK14301 226 GSRLRLRGEGEPGVHGGPPGDLYVVITVEDDKIFQRQGQDLVVTQEISFVQAALGDRIE 284 (373)
T ss_pred CCEEEEeccccCCCCCCCCcCEEEEEEEEECCCceeecCcEEEEEEecHHHHhCCCeEE
Confidence 99999999999876667899999999999999999999999999999999999999874
No 19
>PRK14281 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1e-62 Score=478.26 Aligned_cols=292 Identities=37% Similarity=0.693 Sum_probs=243.5
Q ss_pred ccCcceecccCCCCCHHHHHHHHHHHHHHhCCCCCC-CcchHHHHHHHHHHHHHhchhcccccccccCCCCcCCccc-CC
Q 019721 43 GTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINK-SPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYD-GL 120 (336)
Q Consensus 43 ~~d~Y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~-~~~~~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~g~~~~~~-~~ 120 (336)
..|||+||||+++|+.+|||+|||+||++||||+++ ++.|+++|++|++||+||+|+.+|++||+||++++..... +.
T Consensus 2 ~~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~g~~~~~~~~~~~~ 81 (397)
T PRK14281 2 KRDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKRRRYDQFGHAGVGSSAASGG 81 (397)
T ss_pred CCChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhccchhhccccccCC
Confidence 479999999999999999999999999999999997 4578899999999999999999999999999987753211 11
Q ss_pred CCC--CCCCC---chhhhccccCCCCCCCCC----C-CCCCCccccc-CCCCCCCcceEEEEeecceeeeeceEEEEEee
Q 019721 121 SNT--SQGVD---PFELYSAFFGGSDGLFGG----V-GEAGGINFNF-GNKGNFGLDIRYDLHLSFEESIFGGQRGIEVS 189 (336)
Q Consensus 121 ~~~--~~~~d---~~~~f~~ffg~~~~~fg~----~-g~~~~~~~~~-~~~~~~g~di~~~l~vslee~~~G~~~~v~~~ 189 (336)
+.+ ..+.+ .|..|++|||+..++.+. + +..++..... ...+.++.|+.+.|.|||||+|+|+++++.++
T Consensus 82 ~~~~~~~~~~~~d~f~~f~~~Fgg~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~di~~~l~vtLee~~~G~~~~i~~~ 161 (397)
T PRK14281 82 GPGYGGGGGDFNDIFSAFNDMFGGGARRGGGSPFGFEDVFGGGGRRRRASAGIPGTDLKIRLKLTLEEIAKGVEKTLKIK 161 (397)
T ss_pred CCCCCcCCCCHHHHHHHHHHHhCCCcccccccccccccccCCCcccccccCCCCCCCEEEEEEeEHHHHhCCeEEEEEEE
Confidence 111 01122 333455788752211000 0 0000000000 01124689999999999999999999999999
Q ss_pred eeeeCCCCCCCCccCCCCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCcceEEeeeeeecCCceEEeeeeEEEEE
Q 019721 190 CFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVV 269 (336)
Q Consensus 190 ~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~~~~~~~l~V~ 269 (336)
+.+.|+.|+|+|.... ...+|+.|+|+|.++..+++++|++++..+|+.|.|+|+++.+.|+.|.|.+++...++++|.
T Consensus 162 r~~~C~~C~G~G~~~~-~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~ 240 (397)
T PRK14281 162 KQVPCKECNGTGSKTG-ATETCPTCHGSGEVRQASKTMFGQFVNITACPTCGGEGRVVKDRCPACYGEGIKQGEVTVKVT 240 (397)
T ss_pred eeecCCCCCCcccCCC-CCccCCCCCCCcEEEEEEecccceEEEEEecCCCcceeeeeCCCCCCCCCCccEecceEEEEe
Confidence 9999999999999876 578999999999999888899999988899999999999999999999999999999999999
Q ss_pred eCCCCCCCcEEEEccCCCCCCCCCCCccEEEEEEEecCCCccccccceeeecccChhhhhcCceec
Q 019721 270 IPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSME 335 (336)
Q Consensus 270 Ip~G~~~G~~i~l~G~G~~~~~~g~~GDL~v~i~v~~~~~f~r~g~dL~~~~~I~l~eALlG~~~~ 335 (336)
||||+++|++|+|+|+|++...++.+|||||+|++++|+.|+|+|+||++++.|+|.|||+|++++
T Consensus 241 Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~i~i~~~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~ 306 (397)
T PRK14281 241 VPAGVQDGNYLTLRGQGNAGPRGGAPGDLIVVIEEKPHELFVRNGDDVIYNLAVSYPDLVLGTKVE 306 (397)
T ss_pred cCCCCCCCCEEEEecccccCCCCCCCCcEEEEEEEcCCCCeEEecCCEEEEEEecHHHHhcCCeEE
Confidence 999999999999999999976667899999999999999999999999999999999999999874
No 20
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=100.00 E-value=8.4e-63 Score=473.64 Aligned_cols=281 Identities=44% Similarity=0.817 Sum_probs=245.9
Q ss_pred CcceecccCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhchhcccccccccCCCCcCCcccCCCCCC
Q 019721 45 DYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSNTS 124 (336)
Q Consensus 45 d~Y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~~~~~~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~g~~~~~~~~~~~~ 124 (336)
|||++|||+++|+.+|||+|||+||++||||+++++.++++|++|++||+||+|+.+|++||+||++++..+..+.++++
T Consensus 1 d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~~~~~~~~~~~ 80 (354)
T TIGR02349 1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKDKEAEEKFKEINEAYEVLSDPEKRAQYDQFGHAGFNGGGGGGGGGF 80 (354)
T ss_pred ChHHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhhChHHHHhhhhcccccccccCcCCCCCc
Confidence 79999999999999999999999999999999987788999999999999999999999999999987753211101111
Q ss_pred C-----C-CCchhhhccccCCCCCCCCCCCCCCCcccccCCCCCCCcceEEEEeecceeeeeceEEEEEeeeeeeCCCCC
Q 019721 125 Q-----G-VDPFELYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCG 198 (336)
Q Consensus 125 ~-----~-~d~~~~f~~ffg~~~~~fg~~g~~~~~~~~~~~~~~~g~di~~~l~vslee~~~G~~~~v~~~~~~~C~~C~ 198 (336)
. + .+..++|++|||+.. ++ +. . ......++.|+.++|.|||+|+|+|+++++.+++.+.|+.|+
T Consensus 81 ~~~~~~~~~~~~~~f~~~fg~~~---g~-~~--~----~~~~~~~~~d~~~~l~vsLee~~~G~~~~i~~~r~~~C~~C~ 150 (354)
T TIGR02349 81 NGFDIGFFGDFGDIFGDFFGGGG---GS-GR--R----RRSGPRRGEDLRYDLELTFEEAVFGVEKEIEIPRKESCETCH 150 (354)
T ss_pred CCccccCcCchhhhHHHHhccCc---cc-Cc--c----ccCCCCCCCCeEEEEEEEHHHHhCCeeEEEEeecCCcCCCCC
Confidence 1 1 123478888887421 10 00 0 011245789999999999999999999999999999999999
Q ss_pred CCCccCCCCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCcceEEeeeeeecCCceEEeeeeEEEEEeCCCCCCCc
Q 019721 199 GTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGA 278 (336)
Q Consensus 199 G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~~~~~~~l~V~Ip~G~~~G~ 278 (336)
|+|........+|+.|+|+|.++..+.+++|++++..+|+.|.|+|+++...|+.|.|.+++.+.+.++|.||||+++|+
T Consensus 151 G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~ 230 (354)
T TIGR02349 151 GTGAKPGTDPKTCPTCGGTGQVRRQQGTPFGFFQQQQTCPTCGGEGKIIKEPCSTCKGKGRVKERKTITVKIPAGVDTGQ 230 (354)
T ss_pred CCCCCCCCCCccCCCCCCeeEEEEEEeccCCceEEEEecCCCCCcceecCCCCCCCCCCcEecccceEEEEECCCCCCCC
Confidence 99999888889999999999999999999999998899999999999999999999999999999999999999999999
Q ss_pred EEEEccCCCCCCCCCCCccEEEEEEEecCCCccccccceeeecccChhhhhcCceec
Q 019721 279 TMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSME 335 (336)
Q Consensus 279 ~i~l~G~G~~~~~~g~~GDL~v~i~v~~~~~f~r~g~dL~~~~~I~l~eALlG~~~~ 335 (336)
+|+|+|+|++...++.+|||||+|++++|+.|+|+|+||++++.|+|+|||+|++++
T Consensus 231 ~i~~~g~G~~~~~~~~~GDl~v~i~v~~h~~f~r~g~DL~~~~~isl~eAl~G~~~~ 287 (354)
T TIGR02349 231 RLRVSGKGNAGENGGPNGDLYVVIRVKPHKIFERDGNDLYIEVPISFTQAILGGEIE 287 (354)
T ss_pred EEEEecCccCCCCCCCCCCEEEEEEEecCcceEEecCCEEEEEEeCHHHHhCCCeEE
Confidence 999999999876667889999999999999999999999999999999999999864
No 21
>PRK14295 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=9.1e-63 Score=477.10 Aligned_cols=285 Identities=40% Similarity=0.692 Sum_probs=235.7
Q ss_pred cccCcceecccCCCCCHHHHHHHHHHHHHHhCCCCCC-CcchHHHHHHHHHHHHHhchhcccccccc----cCCCCcCCc
Q 019721 42 AGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINK-SPGAEEKFKEISSAYEVLSDDEKRSVYDR----FGEAGITGE 116 (336)
Q Consensus 42 ~~~d~Y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~-~~~~~~~f~~i~~Ay~vL~d~~~r~~YD~----~G~~g~~~~ 116 (336)
+..|||+||||+++||.+|||+|||+||++||||+|+ ++.++++|++|++||+||+||.+|++||+ ||++++..+
T Consensus 7 ~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~~~~~G~~g~~~~ 86 (389)
T PRK14295 7 IEKDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKRKEYDEARSLFGNGGFRPG 86 (389)
T ss_pred cccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchhHHHHHHHHHHHHHHHCchhhHHHHHHHHhhhcccccccC
Confidence 3589999999999999999999999999999999997 45789999999999999999999999999 998877532
Q ss_pred ccCCCCCCCCCCchhhhccccCCC---------CCCCCCC-CCCCCcccccCCCCCCCcceEEEEeecceeeeeceEEEE
Q 019721 117 YDGLSNTSQGVDPFELYSAFFGGS---------DGLFGGV-GEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGI 186 (336)
Q Consensus 117 ~~~~~~~~~~~d~~~~f~~ffg~~---------~~~fg~~-g~~~~~~~~~~~~~~~g~di~~~l~vslee~~~G~~~~v 186 (336)
..+++.+...+|+.++|..++++. ..+|+++ +. ++ ......++.|+.++|.|||||+|+|+++++
T Consensus 87 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~f~d~f~~~fg~-~~----~~~~~~~g~di~~~l~lsLee~~~G~~k~i 161 (389)
T PRK14295 87 PGGGGGGGFNFDLGDLFGGGAQGGGGAGGGGGLGDVFGGLFNR-GG----RRTQPRRGADVESEVTLSFTEAIDGATVPL 161 (389)
T ss_pred CCCCCCCCCCcccccccccccccccccccccchhhhhcccccC-CC----CCCCCCCCCCEEEEEEEEHHHHhCCceEEE
Confidence 110000001123334443221100 0001100 00 00 011235789999999999999999999999
Q ss_pred EeeeeeeCCCCCCCCccCCCCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCcceEEeeeeeecCCceEEeeeeEE
Q 019721 187 EVSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSM 266 (336)
Q Consensus 187 ~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~~~~~~~l 266 (336)
.+.+.+.|+.|+|+|........+|+.|+|+|.++... |++++..+|+.|+|+|+++.+.|..|.|.+++.+.+++
T Consensus 162 ~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~----g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~~~~~~~l 237 (389)
T PRK14295 162 RLTSQAPCPACSGTGAKNGTTPRVCPTCSGTGQVSRNS----GGFSLSEPCPDCKGRGLIADDPCLVCKGSGRAKSSRTM 237 (389)
T ss_pred EeeccccCCCCcccccCCCCCCcCCCCCCCEeEEEEEe----cceEEEEecCCCcceeEEeccCCCCCCCCceEeeeeEE
Confidence 99999999999999999888889999999999887654 45566689999999999999999999999999999999
Q ss_pred EEEeCCCCCCCcEEEEccCCCCCCCCCCCccEEEEEEEecCCCccccccceeeecccChhhhhcCceec
Q 019721 267 KVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSME 335 (336)
Q Consensus 267 ~V~Ip~G~~~G~~i~l~G~G~~~~~~g~~GDL~v~i~v~~~~~f~r~g~dL~~~~~I~l~eALlG~~~~ 335 (336)
+|.||+|+++|++|+|+|+|++...++.+|||+|+|++++|+.|+|+|+||++++.|+|.+||+|++++
T Consensus 238 ~V~Ip~G~~~G~~i~l~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~ 306 (389)
T PRK14295 238 QVRIPAGVSDGQRIRLRGKGAPGERGGPAGDLYVVVHVDPHPVFGRSGDNLTVTVPVTFPEAALGAEVR 306 (389)
T ss_pred EEEeCCCCCCCCEEEEcccccCCCCCCCCccEEEEEEEecCCCEEEecCCEEEEEeecHHHHhCCCeEE
Confidence 999999999999999999999876677889999999999999999999999999999999999999875
No 22
>PRK14291 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=2.5e-62 Score=473.61 Aligned_cols=287 Identities=38% Similarity=0.676 Sum_probs=240.0
Q ss_pred ccCcceecccCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhchhcccccccccCCCCcCCcccCCC-
Q 019721 43 GTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLS- 121 (336)
Q Consensus 43 ~~d~Y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~~~~~~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~g~~~~~~~~~- 121 (336)
.+|||++|||+++|+.+|||+|||+||++||||+|+++.++++|++|++||+||+||.+|++||+||++++........
T Consensus 2 ~~d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vLsd~~kR~~YD~~g~~~~~~~~~~~~~ 81 (382)
T PRK14291 2 KKDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKNPEAEEKFKEINEAYQVLSDPEKRKLYDQFGHAAFSGSGQQQQG 81 (382)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhcCHHHHHHHhhhcccccccccCcccc
Confidence 4799999999999999999999999999999999988889999999999999999999999999999987653211100
Q ss_pred -CCC---CCCCchhhhccccCCC--CCCCCCCCCCCCcccccCCCCCCCcceEEEEeecceeeeeceEEEEEeeeeeeCC
Q 019721 122 -NTS---QGVDPFELYSAFFGGS--DGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCD 195 (336)
Q Consensus 122 -~~~---~~~d~~~~f~~ffg~~--~~~fg~~g~~~~~~~~~~~~~~~g~di~~~l~vslee~~~G~~~~v~~~~~~~C~ 195 (336)
.++ .+.+..++|++||+.+ .++|++.+...+... ......++.|+.+.|.|||+|+|+|+++++.+.+.+.|+
T Consensus 82 ~~~~~~~~~~~~~d~f~~~f~~fg~~~~fg~~~~~~~~~~-~~~~~~~g~di~~~l~vsLee~~~G~~~~i~~~r~~~C~ 160 (382)
T PRK14291 82 QEGFSDFGGGNIEDILEDVFDIFGFGDIFGRRRATRERRK-TYQRPVKGEDIYQTVEISLEEAYTGTTVSLEVPRYVPCE 160 (382)
T ss_pred ccccccccCCCHHHHHHHHHHhcccccccccccccccccc-ccccccCCCCEEEEEEEEHHHhhCCEEEEEEEeeeccCC
Confidence 111 1234457788775421 112332111000000 011234789999999999999999999999999999999
Q ss_pred CCCCCCccCCCCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCcceEEeeeeeecCCceEEeeeeEEEEEeCCCCC
Q 019721 196 SCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVS 275 (336)
Q Consensus 196 ~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~~~~~~~l~V~Ip~G~~ 275 (336)
.|+|+|........+|+.|+|+|.++.. .+++++..+|+.|+|+|. +.+.|..|+|.+++.+.++++|.||||++
T Consensus 161 ~C~G~G~~~~~~~~~C~~C~G~G~~~~~----~g~~~~~~~C~~C~G~G~-~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~ 235 (382)
T PRK14291 161 ACGGTGYDPGSGEKVCPTCGGSGEIYQR----GGFFRISQTCPTCGGEGV-LREPCSKCNGRGLVIKKETIKVRIPPGVD 235 (382)
T ss_pred CCccccCCCCCCCccCCCCCCceEEEEe----cceEEEEecCCCCCCceE-EccCCCCCCCCceEEeeeEEEEEeCCCCC
Confidence 9999999988888999999999987664 255666789999999995 68899999999999999999999999999
Q ss_pred CCcEEEEccCCCCCCCCCCCccEEEEEEEecCCCccccccceeeecccChhhhhcCceec
Q 019721 276 NGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSME 335 (336)
Q Consensus 276 ~G~~i~l~G~G~~~~~~g~~GDL~v~i~v~~~~~f~r~g~dL~~~~~I~l~eALlG~~~~ 335 (336)
+|++|+|+|+|++...++.+|||||+|++++|+.|+|+|+||++++.|+|.|||+|++++
T Consensus 236 ~G~~i~~~g~G~~~~~g~~~GDL~v~i~~~~h~~F~r~G~DL~~~~~Isl~eAl~G~~~~ 295 (382)
T PRK14291 236 NGSKLRVPGKGHAGRFGGPPGDLYIIVKVKPHPLFERRGDNLYLDVNITVAEAVLGTELE 295 (382)
T ss_pred CCCEEEEecCcCCCCCCCCCccEEEEEEEccCCCeeeecCCeEEEEEeeHHHHhCCCEEE
Confidence 999999999999877678899999999999999999999999999999999999999874
No 23
>PRK10767 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=3.1e-62 Score=472.09 Aligned_cols=277 Identities=42% Similarity=0.807 Sum_probs=235.9
Q ss_pred cccCcceecccCCCCCHHHHHHHHHHHHHHhCCCCCC-CcchHHHHHHHHHHHHHhchhcccccccccCCCCcCCcccCC
Q 019721 42 AGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINK-SPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGL 120 (336)
Q Consensus 42 ~~~d~Y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~-~~~~~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~g~~~~~~~~ 120 (336)
+..|||+||||+++||.+|||+|||+||++||||+|+ ++.++++|++|++||++|+|+.+|+.||+||++++..+..++
T Consensus 2 ~~~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~~~~~~~~~~ 81 (371)
T PRK10767 2 AKRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKRAAYDQYGHAAFEQGGGGG 81 (371)
T ss_pred CCCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcHHHHHHHHHHHHHHHHhcchhhhhHhhhccccccccCCCCC
Confidence 3579999999999999999999999999999999997 466889999999999999999999999999998775321110
Q ss_pred C-CCCCCC-Cch-hhhccccCCCCCCCCCCCCCCCcccccCCCCCCCcceEEEEeecceeeeeceEEEEEeeeeeeCCCC
Q 019721 121 S-NTSQGV-DPF-ELYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSC 197 (336)
Q Consensus 121 ~-~~~~~~-d~~-~~f~~ffg~~~~~fg~~g~~~~~~~~~~~~~~~g~di~~~l~vslee~~~G~~~~v~~~~~~~C~~C 197 (336)
+ ++..++ |.| ++|+.|||+. .+ +. .....++.|+.++|.|||+|+|+|+++++.+.+.+.|+.|
T Consensus 82 ~~~~~~~~~~~f~~~f~~~fgg~------~~--~~-----~~~~~~g~di~~~l~vsLee~~~G~~~~v~~~r~~~C~~C 148 (371)
T PRK10767 82 GFGGGGGFGDIFGDIFGDIFGGG------RG--GG-----RQRARRGADLRYNMEITLEEAVRGVTKEIRIPTLVTCDTC 148 (371)
T ss_pred CCCCccccccchhhhhhhhccCC------cc--cc-----CCCCCCCCCeEEEEEeehHHhhCCeeEEEeeeecccCCCC
Confidence 0 010111 222 3444444320 00 00 1123578999999999999999999999999999999999
Q ss_pred CCCCccCCCCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCcceEEeeeeeecCCceEEeeeeEEEEEeCCCCCCC
Q 019721 198 GGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNG 277 (336)
Q Consensus 198 ~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~~~~~~~l~V~Ip~G~~~G 277 (336)
+|+|.........|+.|+|+|.++..+ |++++..+|+.|+|+|+++.+.|+.|.|.+++.+..+++|.||||+++|
T Consensus 149 ~G~G~~~~~~~~~C~~C~G~G~~~~~~----g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G 224 (371)
T PRK10767 149 HGSGAKPGTSPKTCPTCHGAGQVRMQQ----GFFTVQQTCPTCHGRGKIIKDPCKKCHGQGRVEKEKTLSVKIPAGVDTG 224 (371)
T ss_pred CCcccCCCCCCccCCCCCCeeEEEEee----ceEEEEEeCCCCCCceeECCCCCCCCCCCceEeeeeeEEEecCCCCCCC
Confidence 999999888888999999999876543 5666668999999999999999999999999999999999999999999
Q ss_pred cEEEEccCCCCCCCCCCCccEEEEEEEecCCCccccccceeeecccChhhhhcCceec
Q 019721 278 ATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSME 335 (336)
Q Consensus 278 ~~i~l~G~G~~~~~~g~~GDL~v~i~v~~~~~f~r~g~dL~~~~~I~l~eALlG~~~~ 335 (336)
++|+|+|+|++...++.+|||||+|++++|+.|+|+|+||++++.|+|++||+|++++
T Consensus 225 ~~i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~ 282 (371)
T PRK10767 225 DRIRLSGEGEAGERGGPAGDLYVQIHVKEHPIFERDGNDLYCEVPISFTTAALGGEIE 282 (371)
T ss_pred cEEEEecCccCCCCCCCCcCEEEEEEEeeCCCEEEecCCEEEEEEeCHHHHhCCCeEE
Confidence 9999999999876667899999999999999999999999999999999999999874
No 24
>PRK14283 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=3.2e-62 Score=472.56 Aligned_cols=290 Identities=38% Similarity=0.706 Sum_probs=243.2
Q ss_pred cccccCcceecccCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhchhcccccccccCCCCcCCcccC
Q 019721 40 RAAGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDG 119 (336)
Q Consensus 40 ~~~~~d~Y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~~~~~~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~g~~~~~~~ 119 (336)
|+.++|||++|||+++||.+|||+|||+||++||||+|+++.|+++|++|++||+||+|+.+|++||+||+++++.. ..
T Consensus 1 ~~~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~~Lsd~~kR~~YD~~G~~g~~~~-~~ 79 (378)
T PRK14283 1 MAEKRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEEEGAEEKFKEISEAYAVLSDDEKRQRYDQFGHAGMDGF-SQ 79 (378)
T ss_pred CCCcCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhchhHHHHHHhhhcccccccc-cc
Confidence 34578999999999999999999999999999999999888899999999999999999999999999999876521 11
Q ss_pred CCCCCCCCCchhhhccccCCCCCCCCCCCCCCCcccccCCCCCCCcceEEEEeecceeeeeceEEEEEeeeeeeCCCCCC
Q 019721 120 LSNTSQGVDPFELYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGG 199 (336)
Q Consensus 120 ~~~~~~~~d~~~~f~~ffg~~~~~fg~~g~~~~~~~~~~~~~~~g~di~~~l~vslee~~~G~~~~v~~~~~~~C~~C~G 199 (336)
. ......+..++|..|+++....|..++.+++. .....++.|+.++|.|||+|+|+|+++++.+++.+.|+.|+|
T Consensus 80 ~-~~~~~~~~~~~~~~~~~~~~~~f~~~~fgg~~----~~~~~kg~di~~~l~vsLed~~~G~~~~i~~~r~~~C~~C~G 154 (378)
T PRK14283 80 E-DIFNNINFEDIFQGFGFGIGNIFDMFGFGGGS----RHGPQRGADIYTEVEITLEEAASGVEKDIKVRHTKKCPVCNG 154 (378)
T ss_pred c-ccccccCccccccccccchhhhccccccCCCC----CCCccCCCCeEEEeeeeHHHHhCCcceEEEeeeeccCCCCCc
Confidence 0 00001111222333221110111111000000 111346899999999999999999999999999999999999
Q ss_pred CCccCCCCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCcceEEeeeeeecCCceEEeeeeEEEEEeCCCCCCCcE
Q 019721 200 TGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGAT 279 (336)
Q Consensus 200 ~G~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~~~~~~~l~V~Ip~G~~~G~~ 279 (336)
+|........+|+.|+|+|.+...++.++|++++..+|+.|.|+|+.+.+.|..|.|.+.+.+.+.++|.||||+++|++
T Consensus 155 ~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~IppG~~~G~~ 234 (378)
T PRK14283 155 SRAEPGSEVKTCPTCGGTGQVKQVRNTILGQMMNVTTCPDCQGEGKIVEKPCSNCHGKGVVRETKTISVKIPAGVETGSR 234 (378)
T ss_pred cccCCCCCCccCCCcCCccEEEEEEeccCceEEEEEECCCCCccceecCCCCCCCCCceeeccceeEEEEECCCCCCCcE
Confidence 99998888899999999999998888889998888999999999999999999999999999999999999999999999
Q ss_pred EEEccCCCCCCCCCCCccEEEEEEEecCCCccccccceeeecccChhhhhcCceec
Q 019721 280 MQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSME 335 (336)
Q Consensus 280 i~l~G~G~~~~~~g~~GDL~v~i~v~~~~~f~r~g~dL~~~~~I~l~eALlG~~~~ 335 (336)
|+|+|+|++...++.+|||+|+|+|++|+.|+|+|+||++++.|+|.+||+|++++
T Consensus 235 i~l~g~G~~~~~~~~~GDLiv~i~v~~~~~f~r~G~DL~~~~~Isl~eAl~G~~~~ 290 (378)
T PRK14283 235 LRVSGEGEMGDRGGEPGDLYVVIKVKPHKIFRREGANLYYEKPISFVQAALGDTVD 290 (378)
T ss_pred EEEeccccCCCCCCCCccEEEEEEEEcCCCEEEecCCEEEEEecCHHHHhcCCeEE
Confidence 99999999976667899999999999999999999999999999999999999864
No 25
>PRK14289 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=8.9e-62 Score=470.89 Aligned_cols=292 Identities=38% Similarity=0.694 Sum_probs=245.6
Q ss_pred ccccCcceecccCCCCCHHHHHHHHHHHHHHhCCCCCC-CcchHHHHHHHHHHHHHhchhcccccccccCCCCcCCcccC
Q 019721 41 AAGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINK-SPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDG 119 (336)
Q Consensus 41 ~~~~d~Y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~-~~~~~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~g~~~~~~~ 119 (336)
+...|||++|||+++||.+|||+|||+||++||||+|+ +++++++|++|++||++|+||.+|++||+||+++++.+...
T Consensus 2 ~~~~~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yD~~G~~~~~~~~~~ 81 (386)
T PRK14289 2 AEKRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPDKRSRYDQFGHAGVGGAAGG 81 (386)
T ss_pred CccCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccccCCCC
Confidence 34689999999999999999999999999999999997 45799999999999999999999999999999876532111
Q ss_pred CCCCCCCCCchhhhccc---cCCCCCCCCCCCCCCCcc-cccCCCCCCCcceEEEEeecceeeeeceEEEEEeeeeeeCC
Q 019721 120 LSNTSQGVDPFELYSAF---FGGSDGLFGGVGEAGGIN-FNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCD 195 (336)
Q Consensus 120 ~~~~~~~~d~~~~f~~f---fg~~~~~fg~~g~~~~~~-~~~~~~~~~g~di~~~l~vslee~~~G~~~~v~~~~~~~C~ 195 (336)
++.++.+++..++|+.| |++. |++++..+... ........++.|+.+.|.|||+|+|+|+++++.+++.+.|+
T Consensus 82 ~~~~~~~~~~~~~f~~f~~~fg~~---~gg~~~~~~~~~~~~~~~~~~g~di~~~l~vsLee~~~G~~~~i~~~r~~~C~ 158 (386)
T PRK14289 82 GGFSGEGMSMEDIFSMFGDIFGGH---GGGFGGFGGFGGGGSQQRVFRGSDLRVKVKLNLKEISTGVEKKFKVKKYVPCS 158 (386)
T ss_pred CCCCCCCcChhhhhHHhhhhhccc---ccCcccccccccccccCCCCCCCCeEEEEEEEHHHhhCCeEEEEEEEeecccC
Confidence 11111122333444433 5432 11111000000 00011234689999999999999999999999999999999
Q ss_pred CCCCCCccCCCCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCcceEEeeeeeecCCceEEeeeeEEEEEeCCCCC
Q 019721 196 SCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVS 275 (336)
Q Consensus 196 ~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~~~~~~~l~V~Ip~G~~ 275 (336)
.|+|+|.........|+.|+|+|.++..+++++|++++..+|+.|+|+|+++...|..|+|.+++.+.++++|.||+|++
T Consensus 159 ~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~ 238 (386)
T PRK14289 159 HCHGTGAEGNNGSETCPTCKGSGSVTRVQNTILGTMQTQSTCPTCNGEGKIIKKKCKKCGGEGIVYGEEVITVKIPAGVA 238 (386)
T ss_pred CCCCCCCCCCCCCCcCCCCcCeEEEEEEEecccceEEEEEecCCCCccccccCcCCCCCCCCcEEeeeEEEEEEeCCCCC
Confidence 99999999888889999999999999988899999988899999999999999999999999999999999999999999
Q ss_pred CCcEEEEccCCCCCCCCCCCccEEEEEEEecCCCccccccceeeecccChhhhhcCceec
Q 019721 276 NGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSME 335 (336)
Q Consensus 276 ~G~~i~l~G~G~~~~~~g~~GDL~v~i~v~~~~~f~r~g~dL~~~~~I~l~eALlG~~~~ 335 (336)
+|++|+|+|+|++..+++.+|||+|+|++++|+.|+|+++||++++.|+|.+||+|++++
T Consensus 239 ~G~~i~l~g~G~~~~~~~~~GDL~v~v~v~~~~~f~r~g~DL~~~~~Isl~eAl~G~~~~ 298 (386)
T PRK14289 239 EGMQLSMNGKGNAGKHGGVNGDLLVVIEEEPHPELIRDENDLIYNLLLSVPTAALGGAVE 298 (386)
T ss_pred CCCEEEEeccccCCCCCCCCccEEEEEEEecCCcccccccceeEEeccCHHHHhCCCeEE
Confidence 999999999999876677899999999999999999999999999999999999999874
No 26
>PRK14290 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=3.2e-61 Score=463.56 Aligned_cols=282 Identities=35% Similarity=0.661 Sum_probs=235.1
Q ss_pred cCcceecccCCCCCHHHHHHHHHHHHHHhCCCCCCCc--chHHHHHHHHHHHHHhchhcccccccccCCCCcCCcccCCC
Q 019721 44 TDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSP--GAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLS 121 (336)
Q Consensus 44 ~d~Y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~~~--~~~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~g~~~~~~~~~ 121 (336)
.|||+||||+++||.+|||+|||+||++||||++++. .|+++|++|++||++|+|+.+|++||+||++++..+..+.+
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~G~~~~~~~~~~~~ 82 (365)
T PRK14290 3 KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRRQYDQTGTVDFGAGGSNFN 82 (365)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHhcChhhhhhhcccCCcccccCCCCcc
Confidence 6999999999999999999999999999999999743 68899999999999999999999999999987652110000
Q ss_pred -CCCC-CCCchhhhccccCCCCCCCCCCCCCCCcccccCCCCCCCcceEEEEeecceeeeeceEEEEEeeeeeeCCCCCC
Q 019721 122 -NTSQ-GVDPFELYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGG 199 (336)
Q Consensus 122 -~~~~-~~d~~~~f~~ffg~~~~~fg~~g~~~~~~~~~~~~~~~g~di~~~l~vslee~~~G~~~~v~~~~~~~C~~C~G 199 (336)
.++. ..++.++|++|||+. +++. ..++... ....+.++.|+.+.|.|||+|+|+|+++++.+.+.+.|+.|+|
T Consensus 83 ~~~~~~~~~~~d~f~~~fg~~---~~~~-~~~~~~~-~~~~~~~~~di~~~l~lsLee~~~G~~~~i~~~r~~~C~~C~G 157 (365)
T PRK14290 83 WDNFTHFSDINDIFNQIFGGN---FGSD-FFSGFGN-QQSTRNIDLDIYTNLDISLEDAYYGTEKRIKYRRNAMCPDCSG 157 (365)
T ss_pred ccccccccchhHHHHHHhcCc---cccc-ccccccc-ccCCCCCCCCEEEEEEecHHHhcCCEEEEEEeeecccCCCCcc
Confidence 0001 135568899998752 1100 0000000 0111234789999999999999999999999999999999999
Q ss_pred CCccCCCCcccCCCCCCccEEEEeeecCCcce--eeeecCCCCCCcceEEeeeeeecCCceEEeeeeEEEEEeCCCCCCC
Q 019721 200 TGAKSSNCIQSCKACWGRGGVLKTQRTPFGLI--SQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNG 277 (336)
Q Consensus 200 ~G~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~--~~~~~C~~C~G~G~~~~~~C~~C~g~g~~~~~~~l~V~Ip~G~~~G 277 (336)
+|.... ...+|+.|+|+|.++..+. +|++ ++..+|+.|.|+|+++.+.|+.|.|.+++.+.++++|.||||+.+|
T Consensus 158 ~g~~~~-~~~~C~~C~G~G~~~~~~~--~g~~~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G 234 (365)
T PRK14290 158 TGAKNG-KLITCPTCHGTGQQRIVRG--QGFFRMVTVTTCRTCGGRGRIPEEKCPRCNGTGTVVVNEDISVKIPKGATDN 234 (365)
T ss_pred ccCCCC-CCccCCCCCCcCEEEEEec--cCeEEEEEEEeCCCCCCceeEccCCCCCCCCceeEEEeeEEEEEECCCCCCC
Confidence 999875 5789999999998776553 4444 3357999999999999999999999999999999999999999999
Q ss_pred cEEEEccCCCCCCCCCCCccEEEEEEEecCCCccccccceeeecccChhhhhcCceec
Q 019721 278 ATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSME 335 (336)
Q Consensus 278 ~~i~l~G~G~~~~~~g~~GDL~v~i~v~~~~~f~r~g~dL~~~~~I~l~eALlG~~~~ 335 (336)
++|+|+|+|+. .++.+|||||+|++++|+.|+|+|+||++++.|+|.|||+|++++
T Consensus 235 ~~i~~~g~G~~--~~~~~GDL~v~v~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~ 290 (365)
T PRK14290 235 LRLRVKGKGQS--YGGRTGDLYVVLRVNNDPNIQRINDDLYVDQKINFPQAALGGEIE 290 (365)
T ss_pred cEEEEccccCC--CCCCCCCEEEEEEEcCCCCEEEecCCEEEEEEeCHHHHhCCCEEE
Confidence 99999999986 467899999999999999999999999999999999999999874
No 27
>PRK14300 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=2e-61 Score=465.76 Aligned_cols=281 Identities=35% Similarity=0.690 Sum_probs=239.5
Q ss_pred ccCcceecccCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhchhcccccccccCCCCcCCccc-CCC
Q 019721 43 GTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYD-GLS 121 (336)
Q Consensus 43 ~~d~Y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~~~~~~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~g~~~~~~-~~~ 121 (336)
.+|||+||||+++||.+|||+|||+||++||||+++++.++++|++|++||++|+|+.+|+.||+||++++..... +++
T Consensus 2 ~~~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~~~~~~~~~ 81 (372)
T PRK14300 2 SQDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDAKDAEKKFKEINAAYDVLKDEQKRAAYDRFGHDAFQNQQSRGGG 81 (372)
T ss_pred CCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhhhHhHhhHHHhccccccccccccCCC
Confidence 3799999999999999999999999999999999987788999999999999999999999999999987753210 111
Q ss_pred CCCCC--CCchhhhccccCCCCCCCCCCCCCCCcccccCCCCCCCcceEEEEeecceeeeeceEEEEEeeeeeeCCCCCC
Q 019721 122 NTSQG--VDPFELYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGG 199 (336)
Q Consensus 122 ~~~~~--~d~~~~f~~ffg~~~~~fg~~g~~~~~~~~~~~~~~~g~di~~~l~vslee~~~G~~~~v~~~~~~~C~~C~G 199 (336)
++..+ .+..++|++||+++ |++.+. . .....+.++.|+.++|.|||+|+|+|+++++.+.+.+.|+.|+|
T Consensus 82 g~~~~~~~~~~~~f~~~f~~~---~gg~~~---~--~~~~~~~~g~di~~~l~~sLee~~~G~~k~i~~~r~~~C~~C~G 153 (372)
T PRK14300 82 GNHGGFHPDINDIFGDFFSDF---MGGSRR---S--RPTSSKVRGSDLKYNLTINLEEAFHGIEKNISFSSEVKCDTCHG 153 (372)
T ss_pred CCCCccccchhhhHHHHHHhh---cCCCCC---C--CCCcCCCCCCCeeEEEEEEHHHHhCCceEEEEeeeccccCCCCC
Confidence 11111 12335677777642 221110 0 00011246889999999999999999999999999999999999
Q ss_pred CCccCCCCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCcceEEeeeeeecCCceEEeeeeEEEEEeCCCCCCCcE
Q 019721 200 TGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGAT 279 (336)
Q Consensus 200 ~G~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~~~~~~~l~V~Ip~G~~~G~~ 279 (336)
+|........+|+.|+|+|.++.. .|++++..+|+.|+|+|+++.+.|..|.|.+++.+.++++|.||||+++|++
T Consensus 154 ~g~~~~~~~~~C~~C~G~G~~~~~----~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~ 229 (372)
T PRK14300 154 SGSEKGETVTTCDACSGVGATRMQ----QGFFTIEQACHKCQGNGQIIKNPCKKCHGMGRYHKQRNLSVNIPAGVENGTR 229 (372)
T ss_pred cccCCCCCCccCCCccCeEEEEEe----eceEEEEEeCCCCCccceEeCCCCCCCCCceEEEeeEEEEEEECCCCCCCcE
Confidence 999988888999999999987653 3677777899999999999999999999999999999999999999999999
Q ss_pred EEEccCCCCCCCCCCCccEEEEEEEecCCCccccccceeeecccChhhhhcCceec
Q 019721 280 MQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSME 335 (336)
Q Consensus 280 i~l~G~G~~~~~~g~~GDL~v~i~v~~~~~f~r~g~dL~~~~~I~l~eALlG~~~~ 335 (336)
|+++|+|++..+++.+|||+|+|++++|+.|+|+|+||++++.|+|++||+|++++
T Consensus 230 i~l~g~G~~~~~~~~~GDL~v~i~v~~h~~f~R~G~Dl~~~~~Isl~~Al~G~~~~ 285 (372)
T PRK14300 230 IRHTGEGEAGIRGGNSGDLYVDIAIKPHDIYKVDGANLHCKLPISFVNAALGGEIE 285 (372)
T ss_pred EEEeccccCCCCCCCCCCEEEEEEECCCCCeEEecCCEEEEEecCHHHHhCCCEEE
Confidence 99999999876677899999999999999999999999999999999999999864
No 28
>PRK14292 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=2.7e-60 Score=458.59 Aligned_cols=280 Identities=36% Similarity=0.691 Sum_probs=242.2
Q ss_pred cCcceecccCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhchhcccccccccCCCCcCCcccCCCCC
Q 019721 44 TDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSNT 123 (336)
Q Consensus 44 ~d~Y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~~~~~~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~g~~~~~~~~~~~ 123 (336)
.|||++|||+++||.+|||+|||+||++||||+++++.++++|++|++||+||+||.+|++||+||+++..+...+...+
T Consensus 2 ~d~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~~~~a~~~~~~i~~Ay~vL~d~~~r~~yd~~G~~~~~~~~~~~~~~ 81 (371)
T PRK14292 2 MDYYELLGVSRTASADEIKSAYRKLALKYHPDRNKEKGAAEKFAQINEAYAVLSDAEKRAHYDRFGTAPGAGMPGGDPFG 81 (371)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHhcchhhhhhHhhcCCcccccccCCcccC
Confidence 49999999999999999999999999999999998888999999999999999999999999999987632110010001
Q ss_pred CCCCCchhhhccccCCCCCCCCCCCCCCCcccccCCCCCCCcceEEEEeecceeeeeceEEEEEeeeeeeCCCCCCCCcc
Q 019721 124 SQGVDPFELYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAK 203 (336)
Q Consensus 124 ~~~~d~~~~f~~ffg~~~~~fg~~g~~~~~~~~~~~~~~~g~di~~~l~vslee~~~G~~~~v~~~~~~~C~~C~G~G~~ 203 (336)
+.++|+.++|++|||+.. +++ ..+ .....++.|+.+.+.|||+|+|+|+++++.+.+.+.|+.|+|+|..
T Consensus 82 ~~~~d~~d~f~~~fg~~~--~~~---~~~-----~~~~~~g~d~~~~l~~sLee~~~G~~~~v~~~r~~~C~~C~G~G~~ 151 (371)
T PRK14292 82 GMGFDPMDIFEQLFGGAG--FGG---GRG-----RRGPARGDDLETEARITLEQARAGEEVEVEVDRLTECEHCHGSRTE 151 (371)
T ss_pred ccCCChHHHHHHhhCCCC--cCC---CCC-----cccccCCCCeEEEEeccHHHHcCCeEEEEEEEeeecCCCCcccccC
Confidence 113567789999997521 110 000 0123468999999999999999999999999999999999999997
Q ss_pred CCC-CcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCcceEEeeeeeecCCceEEeeeeEEEEEeCCCCCCCcEEEE
Q 019721 204 SSN-CIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQI 282 (336)
Q Consensus 204 ~~~-~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~~~~~~~l~V~Ip~G~~~G~~i~l 282 (336)
... ...+|+.|+|+|.++..+++.+|++++..+|+.|+|.|..+...|..|.|.+++.+.++++|.||+|+++|++|+|
T Consensus 152 ~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~ 231 (371)
T PRK14292 152 PGGKPPKTCPTCRGAGAVRAQARTIFGVVETQQPCPTCRGEGQIITDPCTVCRGRGRTLKAETVKVKLPRGIDEGYRIRV 231 (371)
T ss_pred CCCCCCccCCCCCCccEEEEEEeccCceEEEeeecCCCcccceecCCCCCCCCCceEEeecceEEEEECCCCCCCcEEEE
Confidence 654 4789999999999998888888998888999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCCCccEEEEEEEecCCCccccccceeeecccChhhhhcCceec
Q 019721 283 RGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSME 335 (336)
Q Consensus 283 ~G~G~~~~~~g~~GDL~v~i~v~~~~~f~r~g~dL~~~~~I~l~eALlG~~~~ 335 (336)
+|+|++... +. |||||+|++++|+.|+|+|+||++++.|+|.|||+|+++.
T Consensus 232 ~G~G~~~~~-~~-GDL~v~i~v~~h~~f~r~g~dL~~~~~isl~eAl~G~~~~ 282 (371)
T PRK14292 232 AGMGNEGPG-GN-GDLYVHIEMEPHPELRREQEHLIYEARIGFAKAALGGQIT 282 (371)
T ss_pred ecCcCCCCC-CC-CCEEEEEEEecCCccccchhceeEEeccCHHHHhCCCeEE
Confidence 999998543 33 9999999999999999999999999999999999999864
No 29
>PRK14293 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=2e-60 Score=459.40 Aligned_cols=285 Identities=45% Similarity=0.869 Sum_probs=246.2
Q ss_pred ccCcceecccCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhchhcccccccccCCCCcCCcccCCCC
Q 019721 43 GTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSN 122 (336)
Q Consensus 43 ~~d~Y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~~~~~~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~g~~~~~~~~~~ 122 (336)
..|||+||||+++||.+|||+|||+||++||||+|+++.++++|++|++||+||+||.+|++||+||++++.++. +. .
T Consensus 2 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~vL~~~~~R~~yd~~g~~g~~~~~-~~-~ 79 (374)
T PRK14293 2 AADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKEPGAEDRFKEINRAYEVLSDPETRARYDQFGEAGVSGAA-GF-P 79 (374)
T ss_pred CCChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHHHHHHhchHHHHHHhhccccccccCC-Cc-C
Confidence 469999999999999999999999999999999998888999999999999999999999999999998765321 00 0
Q ss_pred CCCCC-CchhhhccccCCCCCCCCCCCCCCCcccccCCCCCCCcceEEEEeecceeeeeceEEEEEeeeeeeCCCCCCCC
Q 019721 123 TSQGV-DPFELYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTG 201 (336)
Q Consensus 123 ~~~~~-d~~~~f~~ffg~~~~~fg~~g~~~~~~~~~~~~~~~g~di~~~l~vslee~~~G~~~~v~~~~~~~C~~C~G~G 201 (336)
+..+. +..++|++||+++ ++++..+ .... .....++.|+.++|.|||+|+|+|+++++.+++.+.|+.|+|+|
T Consensus 80 ~~~~~~~~~d~f~~~fg~~----~~~~~~~-~~~~-~~~~~kg~di~~~l~vsLee~~~G~~k~i~~~r~~~C~~C~G~G 153 (374)
T PRK14293 80 DMGDMGGFADIFETFFSGF----GGAGGQG-GRRR-RRGPQRGDDLRYDLKLDFREAIFGGEKEIRIPHLETCETCRGSG 153 (374)
T ss_pred CcccccchHHHHHHHhccc----CCCCCCC-cccc-ccCccCCCCeEEEEEeeHHHHhCCceEEEEeeccccCCCCCCcC
Confidence 11111 1237888888742 1111000 0000 11234688999999999999999999999999999999999999
Q ss_pred ccCCCCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCcceEEeeeeeecCCceEEeeeeEEEEEeCCCCCCCcEEE
Q 019721 202 AKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQ 281 (336)
Q Consensus 202 ~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~~~~~~~l~V~Ip~G~~~G~~i~ 281 (336)
........+|+.|+|+|.+...+++++|++++..+|+.|.|+|+++.+.|..|.|.+++.+..+++|.||||+++|++|+
T Consensus 154 ~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~IppG~~~G~~i~ 233 (374)
T PRK14293 154 AKPGTGPTTCSTCGGAGQVRRATRTPFGSFTQVSECPTCNGTGQVIEDPCDACGGQGVKQVTKKLKINIPAGVDTGTRLR 233 (374)
T ss_pred CCCCCCCeeCCCCCCcceEEEEEecCcceEEEEeeCCCCCcceeEeccCCCCCCCCcccccceEEEEEeCCCCCCCCEEE
Confidence 99888889999999999999888999999988899999999999999999999999999999999999999999999999
Q ss_pred EccCCCCCCCCCCCccEEEEEEEecCCCccccccceeeecccChhhhhcCceec
Q 019721 282 IRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSME 335 (336)
Q Consensus 282 l~G~G~~~~~~g~~GDL~v~i~v~~~~~f~r~g~dL~~~~~I~l~eALlG~~~~ 335 (336)
|+|+|++..+++.+|||+|+|++++|+.|+|+|+||+++++|+|.|||+|++++
T Consensus 234 l~g~G~~~~~~~~~GDL~v~v~v~~~~~f~r~g~DL~~~~~Isl~eAl~G~~~~ 287 (374)
T PRK14293 234 VSGEGDAGLRGGPPGDLYVYLFVKNDPEFRRDGINILSEIKISYLQAILGDTLE 287 (374)
T ss_pred EccCccCCCCCCCCcCEEEEEEEeCCCccChhhhceEEEeccCHHHHhCCCEEE
Confidence 999999866666789999999999999999999999999999999999999874
No 30
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-58 Score=428.11 Aligned_cols=267 Identities=37% Similarity=0.692 Sum_probs=236.8
Q ss_pred cccCcceecccCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhchhcccccccccCCCCcCCcccCCC
Q 019721 42 AGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLS 121 (336)
Q Consensus 42 ~~~d~Y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~~~~~~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~g~~~~~~~~~ 121 (336)
.++.||+||+|+++||++|||+|||+||++||||+|++ +.++|++|++||||||||++|++||+||+++++.+..++
T Consensus 2 ~~~~~y~il~v~~~As~~eikkayrkla~k~HpDkn~~--~~ekfkei~~AyevLsd~ekr~~yD~~g~~~~~~g~~~~- 78 (337)
T KOG0712|consen 2 KNTKLYDILGVSPDASEEEIKKAYRKLALKYHPDKNPD--AGEKFKEISQAYEVLSDPEKREIYDQYGEEGLQGGGGGG- 78 (337)
T ss_pred cccccceeeccCCCcCHHHHHHHHHHHHHHhCCCCCcc--HHHHHHHHHHHHHHhcCHHHHHHHHhhhhhhhcccCCCC-
Confidence 46799999999999999999999999999999999965 889999999999999999999999999999986543221
Q ss_pred CCCCCCCchhhhccccCCCCCCCCCCCCCCCcccccCCCCCCCcceEEEEeecceeeeeceEEEEEeeeeeeCCCCCCCC
Q 019721 122 NTSQGVDPFELYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTG 201 (336)
Q Consensus 122 ~~~~~~d~~~~f~~ffg~~~~~fg~~g~~~~~~~~~~~~~~~g~di~~~l~vslee~~~G~~~~v~~~~~~~C~~C~G~G 201 (336)
++++ |++||+ |++.++ +.+.++.|+.+.|.|||+|+|.|.++++.++++.+|+.|+|.|
T Consensus 79 -g~~~------f~~~F~-----~g~~~~---------~~~~rg~~~~~~~~~~Le~~y~G~s~kl~l~~~~iCs~C~GsG 137 (337)
T KOG0712|consen 79 -GFGG------FSQFFG-----FGGNGG---------RGRQRGKDVVHQLKVTLEELYMGKSKKLFLSRNFICSKCSGSG 137 (337)
T ss_pred -CCcc------HHHhcc-----CCCcCc---------cccccCCCceEEEEEEHHHhhcCCccceecccCccCCcCCCCC
Confidence 1111 888887 222211 1133499999999999999999999999999999999999999
Q ss_pred ccCCCCcccCCCCCCccEEEEeeecCCcceeee-ecCCCCCCcceE--EeeeeeecCCceEEeeeeEEEEEeCCCCCCCc
Q 019721 202 AKSSNCIQSCKACWGRGGVLKTQRTPFGLISQV-STCSKCGGDGKI--IIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGA 278 (336)
Q Consensus 202 ~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~~~-~~C~~C~G~G~~--~~~~C~~C~g~g~~~~~~~l~V~Ip~G~~~G~ 278 (336)
..+.... .|..|+|+|..+...++.++++++. ..|..|+|.|.. ..+.|+.|.|.+++...+.++|.|++|+++++
T Consensus 138 gksg~~~-~C~~C~GsGv~~~~~~~gPg~~qs~q~~C~~C~G~G~~~~~kd~C~~C~G~~~v~~kkil~v~V~~g~~~~~ 216 (337)
T KOG0712|consen 138 GKSGSAP-KCTTCRGSGVQTRTRQMGPGMVQSPQLVCDSCNGSGETISLKDRCKTCSGAKVVREKKILEVHVEPGMPHGQ 216 (337)
T ss_pred CCCCCCC-CCCCCCCCCceeEEEeccccccccceeEeccCCCccccccccccCcccccchhhhhhheeeccccCCCcccc
Confidence 9876544 8999999999999999999998886 689999999997 47899999999999999999999999999999
Q ss_pred EEEEccCCCCCCCCCCCccEEEEEEEecCCCccccccceeeecccChhhhhcCcee
Q 019721 279 TMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSM 334 (336)
Q Consensus 279 ~i~l~G~G~~~~~~g~~GDL~v~i~v~~~~~f~r~g~dL~~~~~I~l~eALlG~~~ 334 (336)
+|++.|++++.. +..+||++|.|..+.|+.|.|.++||++..+|+|.|||+|+.+
T Consensus 217 ki~f~geadea~-g~~pgD~vl~i~~k~h~~F~Rrg~dL~~~~~i~l~eal~G~~~ 271 (337)
T KOG0712|consen 217 KITFKGEADEAP-GTKPGDVVLLIDQKEHPGFDRRGSDLYRKLTISLVEALCGFQR 271 (337)
T ss_pred eeeeeeeeeecC-CCcCccEEEEecccccccceecccccceeeecchhhccccceE
Confidence 999999999854 4569999999999999999999999999999999999999764
No 31
>PRK14299 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=2.1e-45 Score=343.73 Aligned_cols=210 Identities=39% Similarity=0.710 Sum_probs=168.2
Q ss_pred ccCcceecccCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhchhcccccccccCCCCcCCcccCC--
Q 019721 43 GTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGL-- 120 (336)
Q Consensus 43 ~~d~Y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~~~~~~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~g~~~~~~~~-- 120 (336)
..|||+||||+++||.+|||+|||+||++||||+|+++.++++|++|++||++|+||++|+.||+||++++..+..+.
T Consensus 3 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~kr~~yD~~g~~~~~~~~~~~~~ 82 (291)
T PRK14299 3 YKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKSPGAEEKFKEINEAYTVLSDPEKRRIYDTYGTTAASAGWQGPPP 82 (291)
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhcCHHHHHHHHhcCCccccccccCCCC
Confidence 579999999999999999999999999999999998888999999999999999999999999999988654221110
Q ss_pred ---C-CCCCC---CCchhhhccccCCCCCCCCCCCCCCCcccccCCCCCCCcceEEEEeecceeeeeceEEEEEeeeeee
Q 019721 121 ---S-NTSQG---VDPFELYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCFET 193 (336)
Q Consensus 121 ---~-~~~~~---~d~~~~f~~ffg~~~~~fg~~g~~~~~~~~~~~~~~~g~di~~~l~vslee~~~G~~~~v~~~~~~~ 193 (336)
+ .++.+ .+..++|++|||+.. .+++.+ ..........+++.|+.+++.|||+|++.|+++.+.+.
T Consensus 83 ~~~~~~~~~~~~~~~~~d~f~~~fgg~~-~~~~~g---~~~~~~~~~~~~g~dl~~~l~isL~ea~~G~~~~i~l~---- 154 (291)
T PRK14299 83 GPPGGGDFSGFNVGDFSDFFQQLFGGRG-GFGGFG---DLFGSVGRRARKGRDLEAELPLTLEEAYRGGEKVVEVA---- 154 (291)
T ss_pred CCCCCCCccccCcCCHHHHHHHHhCCCC-CCCCcc---cccccccCCCCCCCCEEEEEEecHHHHhCCCeEEEeeC----
Confidence 0 11111 233478899987521 111110 00000011245789999999999999999998887431
Q ss_pred CCCCCCCCccCCCCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCcceEEeeeeeecCCceEEeeeeEEEEEeCCC
Q 019721 194 CDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPG 273 (336)
Q Consensus 194 C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~~~~~~~l~V~Ip~G 273 (336)
.+.++|+||||
T Consensus 155 ---------------------------------------------------------------------g~~~~V~Ip~G 165 (291)
T PRK14299 155 ---------------------------------------------------------------------GERLSVRIPPG 165 (291)
T ss_pred ---------------------------------------------------------------------CEEEEEecCCC
Confidence 24678999999
Q ss_pred CCCCcEEEEccCCCCCCCCCCCccEEEEEEEecCCCccccccceeeecccChhhhhcCceec
Q 019721 274 VSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSME 335 (336)
Q Consensus 274 ~~~G~~i~l~G~G~~~~~~g~~GDL~v~i~v~~~~~f~r~g~dL~~~~~I~l~eALlG~~~~ 335 (336)
+++|++|+++|+|++. |||+|+|++++|+.|+|+|+||++++.|+|.+||+|++++
T Consensus 166 ~~~G~~ir~~g~G~~~------GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAl~G~~~~ 221 (291)
T PRK14299 166 VREGQVIRLAGKGRQG------GDLYLVVRLLPHPVFRLEGDDLYATVDVPAPIAVVGGKVR 221 (291)
T ss_pred cCCCcEEEECCCCCCC------CCEEEEEEEcCCCCeEEECCEEEEEEecCHHHHhCCCEEE
Confidence 9999999999999862 9999999999999999999999999999999999999874
No 32
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=100.00 E-value=6.4e-44 Score=336.07 Aligned_cols=222 Identities=29% Similarity=0.497 Sum_probs=174.9
Q ss_pred ccCcceecccCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhchhcccccccccCCCC----cCCccc
Q 019721 43 GTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAG----ITGEYD 118 (336)
Q Consensus 43 ~~d~Y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~~~~~~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~g----~~~~~~ 118 (336)
..|||++|||+++||.+|||+|||+||++||||+++++.++++|++|++||++|+|+.+|+.||+||..+ +.....
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~~~~~~~~f~~i~~Ay~~L~~~~kr~~yD~~g~~~~~~~~~~~~~ 82 (306)
T PRK10266 3 LKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYDQLWQHRNDPQFNRQFQ 82 (306)
T ss_pred cCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhhhHHHHHHHHHhhccccCcccccccc
Confidence 3799999999999999999999999999999999988889999999999999999999999999998642 211100
Q ss_pred CCCC-CCCCCCchhhhccccCCCCCCCCCCCCCCCcccccCCCCCCCcceEEEEeecceeeeeceEEEEEeeeeeeCCCC
Q 019721 119 GLSN-TSQGVDPFELYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSC 197 (336)
Q Consensus 119 ~~~~-~~~~~d~~~~f~~ffg~~~~~fg~~g~~~~~~~~~~~~~~~g~di~~~l~vslee~~~G~~~~v~~~~~~~C~~C 197 (336)
.+++ .....|..++|+.|||+. ++. . . .....++.|+.+++.|||+|+++|+.+++.+.+.+ |
T Consensus 83 ~~~~~~~~~~~~~~~f~~~~g~~----~~~--~--~----~~~~~kg~di~~~v~isLee~~~G~~k~i~~~~~~----~ 146 (306)
T PRK10266 83 HGDGQSFNAEDFDDIFSSIFGQH----ARQ--S--R----QRPAARGHDIEIEVAVFLEETLTEHKRTISYNLPV----Y 146 (306)
T ss_pred cCCCCCCCCCCHHHHHHHHhCCC----CCC--C--C----CCCCCCCCceEEEEEEEHHHhcCCceEEEEEeccc----c
Confidence 0001 111224457888888741 100 0 0 11234689999999999999999999998876421 1
Q ss_pred CCCCccCCCCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCcceEEeeeeeecCCceEEeeeeEEEEEeCCCCCCC
Q 019721 198 GGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNG 277 (336)
Q Consensus 198 ~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~~~~~~~l~V~Ip~G~~~G 277 (336)
.|.|.+. ....++++|.||+|+++|
T Consensus 147 -----------------~g~G~~~--------------------------------------~~~~~~~~V~Ip~G~~~G 171 (306)
T PRK10266 147 -----------------NAFGMIE--------------------------------------QEIPKTLNVKIPAGVGNG 171 (306)
T ss_pred -----------------cCCCeEE--------------------------------------EeeeEEEEEEECCCCcCC
Confidence 1222110 012357899999999999
Q ss_pred cEEEEccCCCCCCCCCCCccEEEEEEEecCCCccccccceeeecccChhhhhcCceec
Q 019721 278 ATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSME 335 (336)
Q Consensus 278 ~~i~l~G~G~~~~~~g~~GDL~v~i~v~~~~~f~r~g~dL~~~~~I~l~eALlG~~~~ 335 (336)
++|+++|+|++...++.+|||+|+|+|++|+.|+|+|+||++++.|+|++||+|++++
T Consensus 172 ~~i~~~g~G~~~~~~~~~GDl~v~i~v~ph~~f~r~g~DL~~~~~Isl~~al~G~~~~ 229 (306)
T PRK10266 172 QRIRLKGQGTPGENGGPNGDLWLVIHIAPHPLFDIVGQDLEIVVPLAPWEAALGAKVT 229 (306)
T ss_pred cEEEEecCCcCCCCCCCCccEEEEEEEcCCCCeEEeCCceEEEEecCHHHHhCCCEEE
Confidence 9999999999976667789999999999999999999999999999999999999874
No 33
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-42 Score=322.17 Aligned_cols=245 Identities=43% Similarity=0.794 Sum_probs=217.9
Q ss_pred CcceecccCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhchhcccccccccCCCCcCCcccCCCCCC
Q 019721 45 DYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSNTS 124 (336)
Q Consensus 45 d~Y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~~~~~~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~g~~~~~~~~~~~~ 124 (336)
|||+||||+++|+..|||+||++||++||||.|+++++.++|++|.+|||+|+|+++|+.||.++..+. ..
T Consensus 44 d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~~~a~~kF~eI~~AYEiLsd~eKR~~YD~~~~~~~---------~~ 114 (288)
T KOG0715|consen 44 DYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKDKEASKKFKEISEAYEILSDEEKRQEYDVYGLEQH---------GE 114 (288)
T ss_pred chhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCcchhhHHHHHHHHHHHhcCHHHHHHHHHhhhhcc---------cc
Confidence 999999999999999999999999999999999999999999999999999999999999999998751 11
Q ss_pred CCCCchhhhccccCCCCCCCCCCCCCCCcccccCCCCCCCcceEEEEeecceeeeeceEEEEEeeeeeeCCCCCCCCccC
Q 019721 125 QGVDPFELYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKS 204 (336)
Q Consensus 125 ~~~d~~~~f~~ffg~~~~~fg~~g~~~~~~~~~~~~~~~g~di~~~l~vslee~~~G~~~~v~~~~~~~C~~C~G~G~~~ 204 (336)
.+.+++++|..+|++. ..+...+.++.+.+.++|++|..|..+.+.+.....|..|.|.|...
T Consensus 115 ~~g~~~~~~~~~~~~~-----------------~~~~~~~~~~~~d~~~~f~~A~~g~~~~~~~~~~~~~~t~~~~~~~~ 177 (288)
T KOG0715|consen 115 FGGNPFDVFLEFFGGK-----------------MNKRVPDKDQYYDLSLDFKEAVRGSKKRISFNVLSDCETCFGSGAEE 177 (288)
T ss_pred ccCCccchHHHhhccc-----------------ccccccCcccccccccCHHHHhhccccceEEEeecccccccCcCccc
Confidence 1237888888888651 12234556788889999999999999999999999999999999989
Q ss_pred CCCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCcceEEeeeeeecCCceEEeeeeEEEEEeCCCCCCCcEEEEcc
Q 019721 205 SNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRG 284 (336)
Q Consensus 205 ~~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~~~~~~~l~V~Ip~G~~~G~~i~l~G 284 (336)
+.....|..|.|.|.+......+|.+. +|..|.|.|.+..+.|..|.|.+.+...+.+.|.+|+|+.++.+|++.+
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~f~~~----~~~~c~~~~~~~~~~c~~~~g~~~v~~~k~i~i~~~~g~~~~~~l~~~~ 253 (288)
T KOG0715|consen 178 GAKRESCKTCSGRGLVSNPKEDPFILY----TCSYCLGRGLVLRDNCQACSGAGQVRRAKDIMIVLPAGVRSADTLRFAG 253 (288)
T ss_pred ccccccchhhhCcccccccccCCccee----ecccccccceeccchHHHhhcchhhhhheeEEeecCcccccccEEEEec
Confidence 999999999999997765555554433 8999999999999889999999988889999999999999999999999
Q ss_pred CCCCCCCCCCCccEEEEEEEecCCCccccccceeeecccChhh
Q 019721 285 EGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTE 327 (336)
Q Consensus 285 ~G~~~~~~g~~GDL~v~i~v~~~~~f~r~g~dL~~~~~I~l~e 327 (336)
.|.. ||+|.+.|.+++.|+|++.|++.+..|++.+
T Consensus 254 ~~~~--------~l~v~~~v~~~~~~~r~~~~i~~~~~i~~~~ 288 (288)
T KOG0715|consen 254 HGND--------DLFVRLIVAKSPSFRREGKDILYDAIISFTQ 288 (288)
T ss_pred CCcc--------eEEEEEEeccCcccccccCcccccccccccC
Confidence 9863 9999999999999999999999999998864
No 34
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-39 Score=298.19 Aligned_cols=257 Identities=34% Similarity=0.493 Sum_probs=186.5
Q ss_pred cccccCcceecccCCCCCHHHHHHHHHHHHHHhCCCCCC-CcchHHHHHHHHHHHHHhchhcccccccccCCCCcCCccc
Q 019721 40 RAAGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINK-SPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYD 118 (336)
Q Consensus 40 ~~~~~d~Y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~-~~~~~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~g~~~~~~ 118 (336)
....+|||++|||+++|+..|||+||||||++||||+|+ +|.|.+.|++|+.||+|||||++|+.||+||++++.....
T Consensus 12 v~~~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~AYEVLsDpekRk~YD~~GEegL~~~~~ 91 (336)
T KOG0713|consen 12 VLAGRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAAYEVLSDPEKRKHYDTYGEEGLKDENK 91 (336)
T ss_pred hhcCCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHhhhHhhhccccc
Confidence 345789999999999999999999999999999999999 6899999999999999999999999999999999975421
Q ss_pred CCCCCCCCCCchhhhccccCCCCCCCCCCCCCCCcccccCCCCCCCcceEEEEeecceeeeeceEEEEEeeeeeeCCCCC
Q 019721 119 GLSNTSQGVDPFELYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCG 198 (336)
Q Consensus 119 ~~~~~~~~~d~~~~f~~ffg~~~~~fg~~g~~~~~~~~~~~~~~~g~di~~~l~vslee~~~G~~~~v~~~~~~~C~~C~ 198 (336)
..+++..+ .++|+.||+.....+++. ...+...+|.++...+..++++.|.+......-...+.|. |.
T Consensus 92 ~~~~g~~~---~~~f~~~f~dfg~~~~g~--------~~~e~~~~g~~V~~~~e~~~~h~y~~~~~e~~r~~~v~~~-~~ 159 (336)
T KOG0713|consen 92 DGEGGGGG---NDIFSAFFGDFGVTVGGN--------PLEEALPKGSDVSSDLEKQLEHFYMGNFVEEVREKGVYKP-AP 159 (336)
T ss_pred ccccCCcc---cchHHHhhcccccccCCC--------cccCCCCCCceEEeehhhchhhhhcccHHHHHhccCceee-cC
Confidence 11111112 466777777542222211 0122356788999999999999998864332222212111 11
Q ss_pred CCCccCCCCcccCCCCCCccEEEEeeecCCcc--eeeeecCCCCCCcceEEeeeeeecCCceEEeeeeEEEEEeCCCCCC
Q 019721 199 GTGAKSSNCIQSCKACWGRGGVLKTQRTPFGL--ISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSN 276 (336)
Q Consensus 199 G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~~~--~~~~~~C~~C~G~G~~~~~~C~~C~g~g~~~~~~~l~V~Ip~G~~~ 276 (336)
|+ ..|+-+-.+.. +....|. +.|...|..|.+ .+......++++.+..+...
T Consensus 160 g~-----------~~~~~~~~~~~-~~~~~g~~~~~q~~~~~~~~~--------------~k~~~e~~~~~~~~~~~~~~ 213 (336)
T KOG0713|consen 160 GT-----------RKCNCRLEMFT-QQEGPGRFQMLQEAVCDECPN--------------VKLVLEEDPLEVEFERGDAD 213 (336)
T ss_pred cc-----------cccCChhhhee-eccCCChhhhhhhhhhccCCc--------------cceeecCCceeeeeeecccC
Confidence 11 01221111111 1111122 223345665554 44556678899999999999
Q ss_pred CcEEEEccCCCCCCCCCCCccEEEEEEEecCCCccccccceeeecccChhhhhcCceec
Q 019721 277 GATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSME 335 (336)
Q Consensus 277 G~~i~l~G~G~~~~~~g~~GDL~v~i~v~~~~~f~r~g~dL~~~~~I~l~eALlG~~~~ 335 (336)
+....+..+|.+.. -+.+||+++.+...+|+.|.|+++|+++++.|++.++|.|+.+|
T Consensus 214 ~~~~~~~~~~~~h~-~~~~gD~~f~~~~y~~~~~~~k~~~~~~n~~~sl~~~~v~~~~e 271 (336)
T KOG0713|consen 214 GPEEIFELEGEPHI-DGVPGDLFFKIVSYTHPRFERKGDDLYTNVTISLEAALVGFEME 271 (336)
T ss_pred CceeeeeccCCcce-ecccCCceeeeEEecccceecCccchhhHHHHHHHHHHHHHHHH
Confidence 99999999998853 57899999999999999999999999999999999999998765
No 35
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=99.96 E-value=4.1e-28 Score=242.69 Aligned_cols=110 Identities=15% Similarity=0.119 Sum_probs=93.2
Q ss_pred cceEEEEeecceeeeeceEEEEEeeeeeeCCCCCCCCccCCCCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCcc
Q 019721 165 LDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDG 244 (336)
Q Consensus 165 ~di~~~l~vslee~~~G~~~~v~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G 244 (336)
-+|.+.|.|+|+++|+|+++++.+.|.+.| |.|.
T Consensus 657 ~dI~y~l~vtLEeLY~G~tKkIKitR~V~~----g~G~------------------------------------------ 690 (871)
T TIGR03835 657 VNLVYEEEVPQILFFNNQIKEIKYTRHTVD----GNTE------------------------------------------ 690 (871)
T ss_pred cceEEecccCHHHHhCCCeEEEEEEEeecc----CCCc------------------------------------------
Confidence 366778999999999999999999876554 1111
Q ss_pred eEEeeeeeecCCceEEeeeeEEEEEeCCCCCCCcEEEEccCCCCCCCCCCCccEEEEEEEecCCCccccccceeeecccC
Q 019721 245 KIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVD 324 (336)
Q Consensus 245 ~~~~~~C~~C~g~g~~~~~~~l~V~Ip~G~~~G~~i~l~G~G~~~~~~g~~GDL~v~i~v~~~~~f~r~g~dL~~~~~I~ 324 (336)
..+...+.++|.||+|+++|++|+|+|+|+... ++ .|||||+|++++|+.|+|+|+|||+++.|+
T Consensus 691 -------------ktvkE~ktLeVkIPpGVkdGqkIRf~GeGDegp-gg-~GDLyVvIkVKPHp~FrRdGdDL~~~v~IS 755 (871)
T TIGR03835 691 -------------STTNEAITLEIQLPITSQLNISAIFKGFGHDFG-NG-CGDLKVVFKVIPSNFFQIKNDGLHVAALVD 755 (871)
T ss_pred -------------ceeeeeEEEEEecCCCCCCCCEEEeccccCCCC-CC-CCCEEEEEEEcCCCCeEEECCeEEEEEecC
Confidence 123345789999999999999999999999853 33 499999999999999999999999999999
Q ss_pred hhhhhcCceec
Q 019721 325 YTEAILGTSME 335 (336)
Q Consensus 325 l~eALlG~~~~ 335 (336)
|.+||||++++
T Consensus 756 L~EALLGgtIe 766 (871)
T TIGR03835 756 PLVAYNGGIID 766 (871)
T ss_pred HHHHhcCCEEE
Confidence 99999999874
No 36
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=9.8e-21 Score=176.32 Aligned_cols=232 Identities=32% Similarity=0.478 Sum_probs=157.4
Q ss_pred ccCcceecccCCCCCHHHHHHHHHHHHHHhCCCCCCCc--chHHHHHHHHHHHHHhchhcccccccccCCCCcCCcccCC
Q 019721 43 GTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSP--GAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGL 120 (336)
Q Consensus 43 ~~d~Y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~~~--~~~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~g~~~~~~~~ 120 (336)
..|||++|+|.++|+.+||++|||++|++||||+|+.+ .+.++|++|.+||++|+|+.+|.+||+||++++.......
T Consensus 2 ~~d~~~~l~i~~~as~~~i~ka~~~~a~~~hpdk~~~~~~~~~~~~~~~~ea~~~ls~~~kr~~~d~~~~~~~~~~~~~~ 81 (306)
T KOG0714|consen 2 GKDYYKILGIARSASEEDIKKAYRKLALKYHPDKNPSPKEVAEAKFKEIAEAYEVLSDPKKRKIYDQYGEEGLKGGGSFS 81 (306)
T ss_pred cccHHHHhCccccccHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHhhhhccccccCCHHHhhhccccCccccccCCCCC
Confidence 47999999999999999999999999999999998866 5667899999999999999999999999997766411100
Q ss_pred C---C---CCCCCCchhhhccccCCCCCCCCC------------------CCCCCCcccc----------cCCCCCCCcc
Q 019721 121 S---N---TSQGVDPFELYSAFFGGSDGLFGG------------------VGEAGGINFN----------FGNKGNFGLD 166 (336)
Q Consensus 121 ~---~---~~~~~d~~~~f~~ffg~~~~~fg~------------------~g~~~~~~~~----------~~~~~~~g~d 166 (336)
+ . .....++.+.|.+|||....+... .+........ ..........
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (306)
T KOG0714|consen 82 SSFTSELFYFLFRKPDKDFYEFFGVSSPFSGSKKGYRDKNAAPGEEAFKSEGKAFQSLYGPKRKQYDSSGSDRSARQSPP 161 (306)
T ss_pred CCCCCCcceeccCchhhhHHHHhCCCCCCccccccCCccccccCccccccccccccccCCCcccccccccccccccCCCC
Confidence 0 0 012234567788888744332211 0000000000 0000011111
Q ss_pred eEEEEeecceeeeeceEEEEEeeeeeeCCCCCCCCccCCCCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCcceE
Q 019721 167 IRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKI 246 (336)
Q Consensus 167 i~~~l~vslee~~~G~~~~v~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~ 246 (336)
+...+.+++++++.+..+...+.+...
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------------------- 188 (306)
T KOG0714|consen 162 VEHPLRVSLEDLYKGESKKMKISRQSF----------------------------------------------------- 188 (306)
T ss_pred ccCCcceeHHHhccccceeeecccccc-----------------------------------------------------
Confidence 222333356666666655554432110
Q ss_pred EeeeeeecCCceEEeeeeEEEEEeCCCCCCCcEEEEccCCCCCCCCCCCccEEEEEEEecCCCccccccceeee--cccC
Q 019721 247 IIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSK--ISVD 324 (336)
Q Consensus 247 ~~~~C~~C~g~g~~~~~~~l~V~Ip~G~~~G~~i~l~G~G~~~~~~g~~GDL~v~i~v~~~~~f~r~g~dL~~~--~~I~ 324 (336)
... +.........+.+.+.++++.|+.+....+|.... ...+-++++.+..++|..|.+.+.+|... ..|+
T Consensus 189 -----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~p~~~~f~~~~~~~~~~~~~~~~l~~~~~~~~s 261 (306)
T KOG0714|consen 189 -----TSN-GREGSSRSRYLSISIKPGWKEGTKITFPEEGDEEP-GILPADIEFVVDEKPHPLFSRDGNDLSYSSGYEIS 261 (306)
T ss_pred -----cCC-cccccCccceeEEeccCCcccccceeccccccccC-CcCcceeEEEEecCCcccccCCCccceecccceee
Confidence 000 00012235677899999999999999999998643 25678889999999999999999999999 9999
Q ss_pred hhhhhcCcee
Q 019721 325 YTEAILGTSM 334 (336)
Q Consensus 325 l~eALlG~~~ 334 (336)
+.+|++|...
T Consensus 262 ~~~~~~~~~~ 271 (306)
T KOG0714|consen 262 LKEALLGVTV 271 (306)
T ss_pred hhhhhcCcce
Confidence 9999999864
No 37
>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=8.8e-21 Score=169.77 Aligned_cols=72 Identities=54% Similarity=0.885 Sum_probs=69.0
Q ss_pred ccCcceecccCCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHHHHhchhcccccccccCCCCcC
Q 019721 43 GTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKS-PGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGIT 114 (336)
Q Consensus 43 ~~d~Y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~~-~~~~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~g~~ 114 (336)
..|+|+||||+++|+.++||||||+||++||||++++ |++..+|++||+||+||+||.+|.+||.||+.++.
T Consensus 30 ~~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd~P~~~dkf~eIN~Ay~ILsD~~kR~~YD~~g~~~l~ 102 (279)
T KOG0716|consen 30 RLDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKNGDNPEATDKFKEINTAYAILSDPTKRNVYDEYGELGLK 102 (279)
T ss_pred hhHHHHHhCCCcccchHHHHHHHHHHHHHhCCCcCCCCchhHHHHHHHHHHHHHhcChhhhhhHHHhhhHHHH
Confidence 6799999999999999999999999999999999985 89999999999999999999999999999998775
No 38
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional
Probab=99.80 E-value=2.9e-20 Score=190.55 Aligned_cols=76 Identities=38% Similarity=0.635 Sum_probs=71.0
Q ss_pred ccccccCcceecccCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhchhcccccccccCCCCcC
Q 019721 39 IRAAGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGIT 114 (336)
Q Consensus 39 ~~~~~~d~Y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~~~~~~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~g~~ 114 (336)
.+..+++||+||||+++||..|||+|||+||++||||+++++.|.++|++|++||+|||||.+|+.||+||..|+.
T Consensus 568 ~~~~d~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~~~A~ekFq~I~EAYeVLSDp~kRk~YD~~G~~Gl~ 643 (1136)
T PTZ00341 568 IEIPDTLFYDILGVGVNADMKEISERYFKLAENYYPPKRSGNEGFHKFKKINEAYQILGDIDKKKMYNKFGYDGIK 643 (1136)
T ss_pred ccCCCCChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHhhccccccC
Confidence 3446799999999999999999999999999999999998777899999999999999999999999999998764
No 39
>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=3.3e-20 Score=171.44 Aligned_cols=90 Identities=46% Similarity=0.744 Sum_probs=79.6
Q ss_pred cccCcceecccCCCCCHHHHHHHHHHHHHHhCCCCCC-CcchHHHHHHHHHHHHHhchhcccccccccCCCCcCCcccCC
Q 019721 42 AGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINK-SPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGL 120 (336)
Q Consensus 42 ~~~d~Y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~-~~~~~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~g~~~~~~~~ 120 (336)
...|||++|||+.+|+.+||++|||+.|++||||+|+ +|.|.++|+.+.+||+||+|+.+|+.||.+|..+....
T Consensus 3 ~~~dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~dP~A~ekFq~L~eAy~VL~D~~~R~~YDk~~k~~~~~~---- 78 (296)
T KOG0691|consen 3 KDTDYYDLLGISEDATDAEIKKAYRKKALQYHPDKNPGDPQAAEKFQELSEAYEVLSDEESRAAYDKLRKSGSSAQ---- 78 (296)
T ss_pred ccchHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcccch----
Confidence 3789999999999999999999999999999999999 78999999999999999999999999999998765321
Q ss_pred CCCCCCCCchhhhccccCC
Q 019721 121 SNTSQGVDPFELYSAFFGG 139 (336)
Q Consensus 121 ~~~~~~~d~~~~f~~ffg~ 139 (336)
...++.++|..-|++
T Consensus 79 ----~~~d~~~~~r~~f~~ 93 (296)
T KOG0691|consen 79 ----GREDQADGFRKKFGS 93 (296)
T ss_pred ----hhhhHHHHHHHHhhh
Confidence 235777888877763
No 40
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=1.5e-18 Score=154.73 Aligned_cols=69 Identities=59% Similarity=0.903 Sum_probs=64.2
Q ss_pred ccccCcceecccCCCCCHHHHHHHHHHHHHHhCCCCCCCcc--hHHHHHHHHHHHHHhchhcccccccccC
Q 019721 41 AAGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPG--AEEKFKEISSAYEVLSDDEKRSVYDRFG 109 (336)
Q Consensus 41 ~~~~d~Y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~~~~--~~~~f~~i~~Ay~vL~d~~~r~~YD~~G 109 (336)
....|||+||||+++|+.+||++|||++|++||||+++... +.++|+.|++||++|+|+.+|+.||+++
T Consensus 3 ~~~~~~y~iLgv~~~as~~eik~ayrkla~~~HPD~~~~~~~~a~~~f~~i~~Ay~vLsd~~~r~~yd~~~ 73 (237)
T COG2214 3 SDLLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPERRAEYDKIG 73 (237)
T ss_pred hhhhhHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhhCHHHHHHhhhhc
Confidence 45689999999999999999999999999999999998543 8999999999999999999999999974
No 41
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=5e-20 Score=175.05 Aligned_cols=73 Identities=49% Similarity=0.885 Sum_probs=68.6
Q ss_pred cccCcceecccCCCCCHHHHHHHHHHHHHHhCCCCCCCc----chHHHHHHHHHHHHHhchhcccccccccCCCCcC
Q 019721 42 AGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSP----GAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGIT 114 (336)
Q Consensus 42 ~~~d~Y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~~~----~~~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~g~~ 114 (336)
.+.|||.+|+|+++||.+|||+|||++++.||||+..+| .|++.|+.|.+||||||||++|++||.||++||+
T Consensus 7 ~e~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~kRaIYD~~G~qGL~ 83 (546)
T KOG0718|consen 7 DEIELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQKRAIYDNYGEQGLK 83 (546)
T ss_pred chhhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhhcccc
Confidence 356999999999999999999999999999999998755 4889999999999999999999999999999997
No 42
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.77 E-value=6.6e-19 Score=162.67 Aligned_cols=76 Identities=49% Similarity=0.742 Sum_probs=68.1
Q ss_pred cccccCcceecccCCCCCHHHHHHHHHHHHHHhCCCCCCCc----chHHHHHHHHHHHHHhchhcccccccccCCCCcCC
Q 019721 40 RAAGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSP----GAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITG 115 (336)
Q Consensus 40 ~~~~~d~Y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~~~----~~~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~g~~~ 115 (336)
.+..+|||+||||.++|+..||.|||||+|.+||||...+. .|+++|..|..|-|||+||++|+.||. |++.+..
T Consensus 390 qs~kRDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~EkRrqFDn-GeDPLD~ 468 (504)
T KOG0624|consen 390 QSGKRDYYKILGVKRNASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDPEKRRQFDN-GEDPLDP 468 (504)
T ss_pred HhccchHHHHhhhcccccHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCHHHHhhccC-CCCCCCh
Confidence 45679999999999999999999999999999999987654 488999999999999999999999998 7777654
Q ss_pred c
Q 019721 116 E 116 (336)
Q Consensus 116 ~ 116 (336)
.
T Consensus 469 E 469 (504)
T KOG0624|consen 469 E 469 (504)
T ss_pred h
Confidence 3
No 43
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=2.4e-19 Score=170.32 Aligned_cols=74 Identities=45% Similarity=0.679 Sum_probs=67.5
Q ss_pred cccCcceecccCCCCCHHHHHHHHHHHHHHhCCCCCCCc--chHHHHHHHHHHHHHhchhcccccccccCCCCcCC
Q 019721 42 AGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSP--GAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITG 115 (336)
Q Consensus 42 ~~~d~Y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~~~--~~~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~g~~~ 115 (336)
+.+.||++|||.++|++.|||++||+||++||||+|++. ++.++|+.|++||+|||||+.|++||.+-+.-|.+
T Consensus 6 ~~~c~YE~L~v~~~a~d~eik~~YRklALq~HPDknpd~ieeat~~F~~i~aAYeVLSdp~eR~wyd~hreqil~~ 81 (508)
T KOG0717|consen 6 KKRCYYEVLGVERDADDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAYEVLSDPQERAWYDSHREQILRG 81 (508)
T ss_pred hhhHHHHHhcccccCCHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHHhcChHhhhhHHHHHHHHhcC
Confidence 457999999999999999999999999999999999863 68999999999999999999999999987765543
No 44
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=99.73 E-value=2e-18 Score=125.26 Aligned_cols=62 Identities=48% Similarity=0.817 Sum_probs=58.9
Q ss_pred CcceecccCCCCCHHHHHHHHHHHHHHhCCCCCCCcc--hHHHHHHHHHHHHHhchhccccccc
Q 019721 45 DYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPG--AEEKFKEISSAYEVLSDDEKRSVYD 106 (336)
Q Consensus 45 d~Y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~~~~--~~~~f~~i~~Ay~vL~d~~~r~~YD 106 (336)
|||+||||+++|+.++||+||+++++++|||++.... +.+.|+.|++||++|+||.+|+.||
T Consensus 1 ~~y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~~~~R~~YD 64 (64)
T PF00226_consen 1 NPYEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSDPERRRRYD 64 (64)
T ss_dssp HHHHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred ChHHHCCCCCCCCHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCCHHHHHhcC
Confidence 6899999999999999999999999999999987644 8899999999999999999999998
No 45
>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=5.2e-18 Score=148.53 Aligned_cols=69 Identities=46% Similarity=0.762 Sum_probs=64.2
Q ss_pred ccCcceecccCCCCCHHHHHHHHHHHHHHhCCCCCC---CcchHHHHHHHHHHHHHhchhcccccccccCCC
Q 019721 43 GTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINK---SPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEA 111 (336)
Q Consensus 43 ~~d~Y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~---~~~~~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~ 111 (336)
.+|+|+||||.++|++.||++||++||++||||+++ ..++.++|++++.||.||+|.++|++||+.|.-
T Consensus 13 ~~d~YevLGVer~a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsDeekR~~YDetG~i 84 (264)
T KOG0719|consen 13 KKDLYEVLGVERDATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSDEEKRAVYDETGSI 84 (264)
T ss_pred ccCHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCCC
Confidence 459999999999999999999999999999999995 236899999999999999999999999999864
No 46
>PHA03102 Small T antigen; Reviewed
Probab=99.69 E-value=1.7e-17 Score=139.53 Aligned_cols=85 Identities=24% Similarity=0.323 Sum_probs=71.9
Q ss_pred ccCcceecccCCCC--CHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhchhcccccccccCCCCcCCcccCC
Q 019721 43 GTDYYSTLNVRQNA--TLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGL 120 (336)
Q Consensus 43 ~~d~Y~iLgv~~~a--~~~eIk~ayr~la~~~hPd~~~~~~~~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~g~~~~~~~~ 120 (336)
...+|++|||+++| |.+|||+|||++|+++|||+++ ..++|++|++||++|+|+.+|..||.+|.......
T Consensus 4 ~~~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkgg---~~e~~k~in~Ay~~L~d~~~r~~yd~~g~~~~~~~---- 76 (153)
T PHA03102 4 SKELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGG---DEEKMKELNTLYKKFRESVKSLRDLDGEEDSSSEE---- 76 (153)
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCc---hhHHHHHHHHHHHHHhhHHHhccccccCCcccccc----
Confidence 35789999999999 9999999999999999999974 35799999999999999999999999998754321
Q ss_pred CCCCCCCCchhhhccccCC
Q 019721 121 SNTSQGVDPFELYSAFFGG 139 (336)
Q Consensus 121 ~~~~~~~d~~~~f~~ffg~ 139 (336)
...+.++|...||+
T Consensus 77 -----~~~~~~~f~~~fg~ 90 (153)
T PHA03102 77 -----EDVPSGYVGATFGD 90 (153)
T ss_pred -----cccHHHHhhhhcCC
Confidence 12377778777764
No 47
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=99.65 E-value=1.6e-16 Score=113.50 Aligned_cols=58 Identities=67% Similarity=0.969 Sum_probs=54.1
Q ss_pred cCcceecccCCCCCHHHHHHHHHHHHHHhCCCCCC--CcchHHHHHHHHHHHHHhchhcc
Q 019721 44 TDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINK--SPGAEEKFKEISSAYEVLSDDEK 101 (336)
Q Consensus 44 ~d~Y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~--~~~~~~~f~~i~~Ay~vL~d~~~ 101 (336)
.|||++|||+++++.++||+||+++++++|||++. .+.+.+.|++|++||++|+||.+
T Consensus 1 ~~~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~~~~ 60 (60)
T smart00271 1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPEK 60 (60)
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcCCCC
Confidence 48999999999999999999999999999999997 56789999999999999999853
No 48
>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=1.9e-16 Score=137.69 Aligned_cols=71 Identities=37% Similarity=0.673 Sum_probs=66.1
Q ss_pred ccccCcceecccCCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHHHHhchhcccccccccCCC
Q 019721 41 AAGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKS-PGAEEKFKEISSAYEVLSDDEKRSVYDRFGEA 111 (336)
Q Consensus 41 ~~~~d~Y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~~-~~~~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~ 111 (336)
....|+|+||||++.||+.|||+|||+|.+++|||++++ .+.++.|..|++||+.|+|+..|..|..||..
T Consensus 96 ~~~fDPyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~~~~e~~~~~I~KAY~aLTD~~sreN~ekYG~P 167 (230)
T KOG0721|consen 96 RQKFDPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPEEGDEEFFEAIAKAYQALTDKKSRENWEKYGNP 167 (230)
T ss_pred hhcCCcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCcchhHHHHHHHHHHHHHhcchhhHHHHHHhCCC
Confidence 345799999999999999999999999999999999987 56788899999999999999999999999975
No 49
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=99.63 E-value=4.5e-16 Score=109.15 Aligned_cols=54 Identities=67% Similarity=0.987 Sum_probs=51.3
Q ss_pred CcceecccCCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHHHHhch
Q 019721 45 DYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKS-PGAEEKFKEISSAYEVLSD 98 (336)
Q Consensus 45 d~Y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~~-~~~~~~f~~i~~Ay~vL~d 98 (336)
|||++|||+++++.++||++||+|+++||||++.. ..+.+.|++|++||++|+|
T Consensus 1 ~~y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~~~~~~~~~~l~~Ay~~L~d 55 (55)
T cd06257 1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD 55 (55)
T ss_pred ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcC
Confidence 79999999999999999999999999999999876 6789999999999999986
No 50
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=3.4e-16 Score=148.27 Aligned_cols=121 Identities=29% Similarity=0.621 Sum_probs=95.5
Q ss_pred eeeeCCCCCCCCccCC-------CCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCcceEEee-------------
Q 019721 190 CFETCDSCGGTGAKSS-------NCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIID------------- 249 (336)
Q Consensus 190 ~~~~C~~C~G~G~~~~-------~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~~~~------------- 249 (336)
..++|+.|+|+|.... ..+++|+.|+|+|.++. .+|+.|+|.|++...
T Consensus 158 ~~~tC~tC~G~G~v~~~~~~g~~~~~~~C~~C~G~G~~i~------------~pC~~C~G~G~v~~~~~i~V~IPaGv~~ 225 (371)
T COG0484 158 DPKTCPTCNGSGQVRTVQRTGFFSFQQTCPTCNGTGKIIK------------DPCGKCKGKGRVKKKKSISVNIPAGVDD 225 (371)
T ss_pred CCCcCCCCCCcCeEEEEEeeeEEEEEEECCCCccceeECC------------CCCCCCCCCCeEeeeeEEEEECCCCCcc
Confidence 4679999999998532 34789999999999875 799999999986540
Q ss_pred --------------------------------eee-----------------ecCCceEEee-eeEEEEEeCCCCCCCcE
Q 019721 250 --------------------------------HCR-----------------RCGGNGEVQS-KRSMKVVIPPGVSNGAT 279 (336)
Q Consensus 250 --------------------------------~C~-----------------~C~g~g~~~~-~~~l~V~Ip~G~~~G~~ 279 (336)
... ..++...+.. ...++|+||+|++.|++
T Consensus 226 g~~ir~~g~G~~g~~Ggp~GDLyv~i~v~~h~~F~R~g~dL~~~~~Is~~~AalG~~i~vptl~g~~~l~ip~Gtq~G~~ 305 (371)
T COG0484 226 GDRIRLSGEGEAGPNGGPAGDLYVFVHVKPHPIFERDGDDLYCEVPISFTEAALGGEIEVPTLDGRVKLKIPAGTQTGEV 305 (371)
T ss_pred CCEEEEecCcccCCCCCCCccEEEEEEeecCCCeEECCCceEeccccCHHHHhcCCEEEEEecCCCEEEecCCCCccCcE
Confidence 111 1233333322 23379999999999999
Q ss_pred EEEccCCCCCCCCCCCccEEEEEEEecCCCccccccceeeecc
Q 019721 280 MQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKIS 322 (336)
Q Consensus 280 i~l~G~G~~~~~~g~~GDL~v~i~v~~~~~f~r~g~dL~~~~~ 322 (336)
++|+|+|++..++...|||||+|+|..|..+..++.+|+.++.
T Consensus 306 ~rl~gkG~p~~~~~~~GDl~v~v~v~~P~~ls~~q~~lL~~~~ 348 (371)
T COG0484 306 FRLRGKGMPKLRSGGRGDLYVRVKVETPKNLSDEQKELLEEFA 348 (371)
T ss_pred EEEcCCCccccCCCCcCCEEEEEEEEcCCCCCHHHHHHHHHHH
Confidence 9999999998777778999999999999999988888876654
No 51
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=3.9e-16 Score=147.30 Aligned_cols=93 Identities=41% Similarity=0.657 Sum_probs=77.9
Q ss_pred cccccccCcceecccCCCCCHHHHHHHHHHHHHHhCCCCCC-C-cchHHHHHHHHHHHHHhchhcccccccccCCCCcCC
Q 019721 38 MIRAAGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINK-S-PGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITG 115 (336)
Q Consensus 38 ~~~~~~~d~Y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~-~-~~~~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~g~~~ 115 (336)
+.++..+|||.||||.++|+..|||+|||++|+.||||++. + .+++.+|+++-+||.+|+||.+|..||.--. +..
T Consensus 367 LkkSkRkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~r~dsg~d--le~ 444 (486)
T KOG0550|consen 367 LKKSKRKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVRFDSGQD--LEE 444 (486)
T ss_pred HHHhhhhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhhcccccc--hhh
Confidence 55778899999999999999999999999999999999987 3 5789999999999999999999999997321 111
Q ss_pred cccCCCCCCCCCCchhhhccc
Q 019721 116 EYDGLSNTSQGVDPFELYSAF 136 (336)
Q Consensus 116 ~~~~~~~~~~~~d~~~~f~~f 136 (336)
. +.++.++||+.+|..|
T Consensus 445 ---~-~~~~a~~dp~~~~~a~ 461 (486)
T KOG0550|consen 445 ---V-GSGGAGFDPFNIFRAF 461 (486)
T ss_pred ---h-cCCCcCcChhhhhhhc
Confidence 1 1222678999888877
No 52
>PRK14282 chaperone protein DnaJ; Provisional
Probab=99.56 E-value=3.7e-15 Score=144.13 Aligned_cols=119 Identities=29% Similarity=0.572 Sum_probs=89.6
Q ss_pred eeeCCCCCCCCccCC---------CCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCcceEEee------------
Q 019721 191 FETCDSCGGTGAKSS---------NCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIID------------ 249 (336)
Q Consensus 191 ~~~C~~C~G~G~~~~---------~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~~~~------------ 249 (336)
...|+.|+|+|.... ....+|+.|+|+|.++. ..|+.|+|.|.+...
T Consensus 169 ~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~l~V~Ip~G~~ 236 (369)
T PRK14282 169 YVTCPKCHGTGRIREERRSFFGVFVSERTCERCGGTGKIPG------------EYCHECGGSGRIRRRVRTTVKIPAGVE 236 (369)
T ss_pred CcCCCCCCCcCEEEEEEEccCcceEEEEECCCCCCcceeCC------------CCCCCCCCceeEEEEEEEEEEeCCCCC
Confidence 467999999997522 23568999999998754 679999999865430
Q ss_pred ---------------------------------ee-----------------eecCCceEEee--eeEEEEEeCCCCCCC
Q 019721 250 ---------------------------------HC-----------------RRCGGNGEVQS--KRSMKVVIPPGVSNG 277 (336)
Q Consensus 250 ---------------------------------~C-----------------~~C~g~g~~~~--~~~l~V~Ip~G~~~G 277 (336)
.. ..+++...+.. ...++|+||+|+++|
T Consensus 237 ~G~~i~~~g~G~~~~~~~~~GDl~i~i~v~~h~~F~r~G~DL~~~~~Isl~eAl~G~~~~i~~ldG~~i~v~Ip~g~~~g 316 (369)
T PRK14282 237 DGTVLRITGGGNAGYYGGPYGDLYVIVRVRPDPRFKRSGSDLIYDVTIDYLQAILGTTVEVPLPEGGTTMLKIPPGTQPE 316 (369)
T ss_pred CCCEEEEecccCCCCCCCCCCCEEEEEEEecCCcEEEecCCEEEEEEeCHHHHhCCCEEEEeCCCCcEEEEEeCCCcCCC
Confidence 00 01222222222 346799999999999
Q ss_pred cEEEEccCCCCCCCCCCCccEEEEEEEecCCCccccccceeeec
Q 019721 278 ATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKI 321 (336)
Q Consensus 278 ~~i~l~G~G~~~~~~g~~GDL~v~i~v~~~~~f~r~g~dL~~~~ 321 (336)
++++|+|+|++....+.+|||||+|+|+.|+.|++++.+|+.++
T Consensus 317 ~~iri~GkG~p~~~~~~~GDL~V~~~v~~P~~l~~~~~~ll~~l 360 (369)
T PRK14282 317 TVFRLKGKGLPNMRYGRRGDLIVNVHVEIPKRLSREERKLLKEL 360 (369)
T ss_pred CEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHH
Confidence 99999999998654456899999999999999999999987654
No 53
>PRK14290 chaperone protein DnaJ; Provisional
Probab=99.52 E-value=1.6e-14 Score=139.62 Aligned_cols=119 Identities=26% Similarity=0.614 Sum_probs=91.2
Q ss_pred eeeCCCCCCCCccCC---------CCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCcceEEee------------
Q 019721 191 FETCDSCGGTGAKSS---------NCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIID------------ 249 (336)
Q Consensus 191 ~~~C~~C~G~G~~~~---------~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~~~~------------ 249 (336)
...|+.|+|+|.... ....+|+.|.|.|+++. .+|+.|+|.|.+...
T Consensus 165 ~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~~~V~Ip~G~~ 232 (365)
T PRK14290 165 LITCPTCHGTGQQRIVRGQGFFRMVTVTTCRTCGGRGRIPE------------EKCPRCNGTGTVVVNEDISVKIPKGAT 232 (365)
T ss_pred CccCCCCCCcCEEEEEeccCeEEEEEEEeCCCCCCceeEcc------------CCCCCCCCceeEEEeeEEEEEECCCCC
Confidence 468999999997521 12478999999998754 689999999986530
Q ss_pred ------------------------------------------------eeeecCCceEEee-eeEEEEEeCCCCCCCcEE
Q 019721 250 ------------------------------------------------HCRRCGGNGEVQS-KRSMKVVIPPGVSNGATM 280 (336)
Q Consensus 250 ------------------------------------------------~C~~C~g~g~~~~-~~~l~V~Ip~G~~~G~~i 280 (336)
.=..+++...+.. ...++|+||+|+++|++|
T Consensus 233 ~G~~i~~~g~G~~~~~~~GDL~v~v~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~I~~~~g~i~V~Ip~g~~~g~~i 312 (365)
T PRK14290 233 DNLRLRVKGKGQSYGGRTGDLYVVLRVNNDPNIQRINDDLYVDQKINFPQAALGGEIEIKLFREKYNLKIPEGTQPGEVL 312 (365)
T ss_pred CCcEEEEccccCCCCCCCCCEEEEEEEcCCCCEEEecCCEEEEEEeCHHHHhCCCEEEEEcCCceEEEEECCccCCCcEE
Confidence 0001223322222 235799999999999999
Q ss_pred EEccCCCCCCCCCCCccEEEEEEEecCCCccccccceeeec
Q 019721 281 QIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKI 321 (336)
Q Consensus 281 ~l~G~G~~~~~~g~~GDL~v~i~v~~~~~f~r~g~dL~~~~ 321 (336)
+|+|+|++...+..+|||||+|+|.+|+.|++++.+|+.++
T Consensus 313 ri~g~G~p~~~~~~~GDL~V~~~V~~P~~l~~~~~~ll~~~ 353 (365)
T PRK14290 313 KIKGAGMPHLNGHGSGDLLVRINVEVPKRLTSKQKELIREF 353 (365)
T ss_pred EECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHH
Confidence 99999998655556899999999999999999999988764
No 54
>PRK14298 chaperone protein DnaJ; Provisional
Probab=99.52 E-value=1.2e-14 Score=140.80 Aligned_cols=119 Identities=26% Similarity=0.540 Sum_probs=87.6
Q ss_pred eeCCCCCCCCccCC---------CCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCcceEEee-------------
Q 019721 192 ETCDSCGGTGAKSS---------NCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIID------------- 249 (336)
Q Consensus 192 ~~C~~C~G~G~~~~---------~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~~~~------------- 249 (336)
..|+.|+|+|.... ..+.+|+.|+|+|.++. .+|+.|+|.|.+...
T Consensus 159 ~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~l~V~IppG~~~ 226 (377)
T PRK14298 159 KRCPTCGGTGQVTTTRSTPLGQFVTTTTCSTCHGRGQVIE------------SPCPVCSGTGKVRKTRKITVNVPAGADS 226 (377)
T ss_pred CcCCCCCCccEEEEEEecCceeEEEEEeCCCCCCCCcccC------------CCCCCCCCccEEEEEEEEEecCCCCCCC
Confidence 57899998886421 23568999999987654 578888888876430
Q ss_pred --------------------------------e-----------------eeecCCceEEee-eeEEEEEeCCCCCCCcE
Q 019721 250 --------------------------------H-----------------CRRCGGNGEVQS-KRSMKVVIPPGVSNGAT 279 (336)
Q Consensus 250 --------------------------------~-----------------C~~C~g~g~~~~-~~~l~V~Ip~G~~~G~~ 279 (336)
. =..+++...+.. ...++|+||+|+++|++
T Consensus 227 G~~i~~~g~G~~~~~~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~i~v~ip~g~~~g~~ 306 (377)
T PRK14298 227 GLRLKLSGEGEAGSPGAPSGDLYIVLHVKEHDYFERVGDDIISEIPISFTQAALGADIMVPTLYGKVKMNIPPGTQTHSV 306 (377)
T ss_pred CCEEEEecccCCCCCCCCCcCEEEEEEEecCCCeEEEcCcEEEEEEeCHHHHhCCCeEEEecCCCCEEEEeCCCcccCCE
Confidence 0 001223222221 22368999999999999
Q ss_pred EEEccCCCCCCCCCCCccEEEEEEEecCCCccccccceeeecc
Q 019721 280 MQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKIS 322 (336)
Q Consensus 280 i~l~G~G~~~~~~g~~GDL~v~i~v~~~~~f~r~g~dL~~~~~ 322 (336)
++|+|+|++...++.+|||||+|+|..|+.|++++.+|+.++.
T Consensus 307 lri~g~G~p~~~~~~~GDL~V~~~V~~P~~ls~~~~~ll~~l~ 349 (377)
T PRK14298 307 FRLKDKGMPRLHGHGKGDQLVKVIVKTPTKLTQEQKELLREFD 349 (377)
T ss_pred EEECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHH
Confidence 9999999996555568999999999999999999988876653
No 55
>PRK14294 chaperone protein DnaJ; Provisional
Probab=99.51 E-value=1.7e-14 Score=139.47 Aligned_cols=120 Identities=25% Similarity=0.530 Sum_probs=88.2
Q ss_pred eeeCCCCCCCCccCC-----CCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCcceEEee----------------
Q 019721 191 FETCDSCGGTGAKSS-----NCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIID---------------- 249 (336)
Q Consensus 191 ~~~C~~C~G~G~~~~-----~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~~~~---------------- 249 (336)
...|+.|+|+|.... +...+|+.|+|+|+++. .+|..|+|.|.+...
T Consensus 161 ~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~ 228 (366)
T PRK14294 161 PTTCPQCGGSGQVTQSQGFFSIRTTCPRCRGMGKVIV------------SPCKTCHGQGRVRVSKTVQVKIPAGVDTGSR 228 (366)
T ss_pred cccCCCcCCeEEEEEEeeeEEEEeeCCCCCCcCeecC------------cCCCCCCCceEeecceeEEEecCCCCcCCcE
Confidence 357888988887531 24678889999887754 578888888876430
Q ss_pred ----------------------------------------------eeeecCCceEEee-eeEEEEEeCCCCCCCcEEEE
Q 019721 250 ----------------------------------------------HCRRCGGNGEVQS-KRSMKVVIPPGVSNGATMQI 282 (336)
Q Consensus 250 ----------------------------------------------~C~~C~g~g~~~~-~~~l~V~Ip~G~~~G~~i~l 282 (336)
.=..+++...+.. ...++|.||+|+++|++++|
T Consensus 229 i~~~g~G~~~~~~~~~GDl~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~~~v~ip~g~~~g~~iri 308 (366)
T PRK14294 229 LRLRGEGEAGVRGGPPGDLYVFLTVEPHEFFERDGNDVHCKVPISFVQAALGAQIEVPTLEGERELKIPKGTQPGDIFRF 308 (366)
T ss_pred EEEccCccCCCCCCCCCcEEEEEEEccCCcceecCCCEEEEEEeCHHHHhCCCeEEEECCCCcEEEEECCCcCCCCEEEE
Confidence 0001222222221 12358999999999999999
Q ss_pred ccCCCCCCCCCCCccEEEEEEEecCCCccccccceeeecc
Q 019721 283 RGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKIS 322 (336)
Q Consensus 283 ~G~G~~~~~~g~~GDL~v~i~v~~~~~f~r~g~dL~~~~~ 322 (336)
+|+|++...++.+|||||+|+|.+|+.|++++.+|+..+.
T Consensus 309 ~G~G~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~ll~~~~ 348 (366)
T PRK14294 309 KGKGIPSLRGGGRGDQIIEVEVKVPTRLTKKQEELLTEFA 348 (366)
T ss_pred CCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHH
Confidence 9999996555568999999999999999999999887754
No 56
>PRK14285 chaperone protein DnaJ; Provisional
Probab=99.50 E-value=1.8e-14 Score=139.03 Aligned_cols=119 Identities=21% Similarity=0.546 Sum_probs=89.7
Q ss_pred eeeCCCCCCCCccCC-----CCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCcceEEee----------------
Q 019721 191 FETCDSCGGTGAKSS-----NCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIID---------------- 249 (336)
Q Consensus 191 ~~~C~~C~G~G~~~~-----~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~~~~---------------- 249 (336)
...|+.|+|+|.... +.+.+|+.|+|+|.++. .+|..|+|.|.+...
T Consensus 163 ~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~ 230 (365)
T PRK14285 163 PSICNMCNGSGRVMQGGGFFRVTTTCPKCYGNGKIIS------------NPCKSCKGKGSLKKKETIELKIPAGIDDNQQ 230 (365)
T ss_pred CccCCCccCceeEEecCceeEEeeecCCCCCcccccC------------CCCCCCCCCCEEeccEEEEEEECCCCCCCCE
Confidence 457999999986521 34679999999998764 679999999966430
Q ss_pred ----------------------------------------------eeeecCCceEEee--eeEEEEEeCCCCCCCcEEE
Q 019721 250 ----------------------------------------------HCRRCGGNGEVQS--KRSMKVVIPPGVSNGATMQ 281 (336)
Q Consensus 250 ----------------------------------------------~C~~C~g~g~~~~--~~~l~V~Ip~G~~~G~~i~ 281 (336)
.=..+++...+.. ...++|.||+|+++|++++
T Consensus 231 i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~f~R~G~dL~~~~~Isl~eAl~G~~~~i~tldG~~v~V~Ip~g~~~g~~ir 310 (365)
T PRK14285 231 IKMRGKGSVNPDNQQYGDLYIKILIKPHKIFKRNGKDLYATLPISFTQAALGKEIKIQTIASKKIKIKIPKGTENDEQII 310 (365)
T ss_pred EEEeeccccCCCCCCCCCEEEEEEEecCCCeEEeccceEEEEecCHHHHhCCCEEEEECCCCCEEEEEeCCCcCCCcEEE
Confidence 0001223322222 2467999999999999999
Q ss_pred EccCCCCCCCCCCCccEEEEEEEecCCCccccccceeeec
Q 019721 282 IRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKI 321 (336)
Q Consensus 282 l~G~G~~~~~~g~~GDL~v~i~v~~~~~f~r~g~dL~~~~ 321 (336)
|+|+|++.......|||||+|+|+.|+.|++++..|+..+
T Consensus 311 l~GkG~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~~l~~l 350 (365)
T PRK14285 311 IKNEGMPILHTEKFGNLILIIKIKTPKNLNSNAIKLLENL 350 (365)
T ss_pred ECCCCccCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHH
Confidence 9999998655455799999999999999999988876654
No 57
>PRK10767 chaperone protein DnaJ; Provisional
Probab=99.49 E-value=3.2e-14 Score=137.84 Aligned_cols=58 Identities=24% Similarity=0.488 Sum_probs=51.7
Q ss_pred EEEEEeCCCCCCCcEEEEccCCCCCCCCCCCccEEEEEEEecCCCccccccceeeecc
Q 019721 265 SMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKIS 322 (336)
Q Consensus 265 ~l~V~Ip~G~~~G~~i~l~G~G~~~~~~g~~GDL~v~i~v~~~~~f~r~g~dL~~~~~ 322 (336)
.++|+||+|+++|++++|+|+|++...++.+|||||+|+|..|+.|++++.+|+.++.
T Consensus 289 ~i~v~ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~v~~~v~~P~~l~~~~~~ll~~l~ 346 (371)
T PRK10767 289 RVKLKIPEGTQTGKLFRLRGKGVKSVRSGARGDLYCQVVVETPVNLTKRQKELLEEFE 346 (371)
T ss_pred cEEEEeCCCCCCCCEEEECCCCcCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHH
Confidence 5689999999999999999999986555678999999999999999999999877653
No 58
>PRK14300 chaperone protein DnaJ; Provisional
Probab=99.49 E-value=2.9e-14 Score=138.02 Aligned_cols=119 Identities=29% Similarity=0.633 Sum_probs=89.5
Q ss_pred eeeCCCCCCCCccCC-----CCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCcceEEee----------------
Q 019721 191 FETCDSCGGTGAKSS-----NCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIID---------------- 249 (336)
Q Consensus 191 ~~~C~~C~G~G~~~~-----~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~~~~---------------- 249 (336)
...|+.|+|+|.... +...+|+.|+|+|.++. .+|..|+|.|.+...
T Consensus 162 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~ 229 (372)
T PRK14300 162 VTTCDACSGVGATRMQQGFFTIEQACHKCQGNGQIIK------------NPCKKCHGMGRYHKQRNLSVNIPAGVENGTR 229 (372)
T ss_pred CccCCCccCeEEEEEeeceEEEEEeCCCCCccceEeC------------CCCCCCCCceEEEeeEEEEEEECCCCCCCcE
Confidence 367999999997521 23568999999998764 679999999886430
Q ss_pred ----------------------------------------------eeeecCCceEEee--eeEEEEEeCCCCCCCcEEE
Q 019721 250 ----------------------------------------------HCRRCGGNGEVQS--KRSMKVVIPPGVSNGATMQ 281 (336)
Q Consensus 250 ----------------------------------------------~C~~C~g~g~~~~--~~~l~V~Ip~G~~~G~~i~ 281 (336)
.=..+++...+.. ...++|+||+|+++|++|+
T Consensus 230 i~l~g~G~~~~~~~~~GDL~v~i~v~~h~~f~R~G~Dl~~~~~Isl~~Al~G~~~~i~~ldg~~i~v~Ip~g~~~g~~ir 309 (372)
T PRK14300 230 IRHTGEGEAGIRGGNSGDLYVDIAIKPHDIYKVDGANLHCKLPISFVNAALGGEIEVPVIEGGKVNLTIPAGTQNGDQLR 309 (372)
T ss_pred EEEeccccCCCCCCCCCCEEEEEEECCCCCeEEecCCEEEEEecCHHHHhCCCEEEEecCCCCEEEEEECCccCCCcEEE
Confidence 0001223333332 3478999999999999999
Q ss_pred EccCCCCCCCCCCCccEEEEEEEecCCCccccccceeeec
Q 019721 282 IRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKI 321 (336)
Q Consensus 282 l~G~G~~~~~~g~~GDL~v~i~v~~~~~f~r~g~dL~~~~ 321 (336)
|+|+|++...+..+|||||+|+|+.|..|+.++..|+..+
T Consensus 310 i~g~G~p~~~~~~~GDL~V~~~v~~P~~ls~~qk~~l~~l 349 (372)
T PRK14300 310 LRSKGMSKMRSTIRGDMLTHIHVEVPKNLSKRQRELLEEF 349 (372)
T ss_pred ECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHH
Confidence 9999998655567899999999999999988877766554
No 59
>PRK14301 chaperone protein DnaJ; Provisional
Probab=99.49 E-value=3.4e-14 Score=137.57 Aligned_cols=120 Identities=28% Similarity=0.525 Sum_probs=87.5
Q ss_pred eeeCCCCCCCCccC-----CCCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCcceEEee----------------
Q 019721 191 FETCDSCGGTGAKS-----SNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIID---------------- 249 (336)
Q Consensus 191 ~~~C~~C~G~G~~~-----~~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~~~~---------------- 249 (336)
...|+.|+|+|... .+...+|+.|+|+|+++. .+|+.|+|.|.+...
T Consensus 161 ~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~ 228 (373)
T PRK14301 161 PETCRHCGGSGQVRQSQGFFQIAVPCPVCRGEGRVIT------------HPCPKCKGSGIVQQTRELKVRIPAGVDTGSR 228 (373)
T ss_pred CcccCCccCeeEEEEEeeeEEEEEeCCCCCceeeecC------------CCCCCCCCCceeccceEEEEEeCCCCcCCCE
Confidence 35789999888752 123678999999998764 578999888866430
Q ss_pred ----------------------------------------------eeeecCCceEEee-eeEEEEEeCCCCCCCcEEEE
Q 019721 250 ----------------------------------------------HCRRCGGNGEVQS-KRSMKVVIPPGVSNGATMQI 282 (336)
Q Consensus 250 ----------------------------------------------~C~~C~g~g~~~~-~~~l~V~Ip~G~~~G~~i~l 282 (336)
.=..+++...+.. ...++|+||+|+++|++++|
T Consensus 229 i~~~g~G~~~~~~~~~GDLiv~i~v~~h~~f~r~G~DL~~~~~Isl~eAl~G~~~~v~tldG~i~v~ip~g~~~g~~~ri 308 (373)
T PRK14301 229 LRLRGEGEPGVHGGPPGDLYVVITVEDDKIFQRQGQDLVVTQEISFVQAALGDRIEVPTLDDPVTLDIPKGTQSGEVFRL 308 (373)
T ss_pred EEEeccccCCCCCCCCcCEEEEEEEEECCCceeecCcEEEEEEecHHHHhCCCeEEEecCCccEEEEECCCcCCCcEEEE
Confidence 0001222222211 22378999999999999999
Q ss_pred ccCCCCCCCCCCCccEEEEEEEecCCCccccccceeeecc
Q 019721 283 RGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKIS 322 (336)
Q Consensus 283 ~G~G~~~~~~g~~GDL~v~i~v~~~~~f~r~g~dL~~~~~ 322 (336)
+|+|++...++.+|||||+|+|..|+.++.++.+++..+.
T Consensus 309 ~g~G~p~~~~~~~GDL~I~~~V~~P~~l~~~q~~~l~~l~ 348 (373)
T PRK14301 309 RGKGLPYLGSSQKGDLLVEVSVVTPTKLTKRQEELLREFE 348 (373)
T ss_pred cCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHH
Confidence 9999997655568999999999999999888877766543
No 60
>PRK14278 chaperone protein DnaJ; Provisional
Probab=99.48 E-value=5e-14 Score=136.63 Aligned_cols=119 Identities=28% Similarity=0.594 Sum_probs=89.2
Q ss_pred eeeCCCCCCCCccCC---------CCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCcceEEee------------
Q 019721 191 FETCDSCGGTGAKSS---------NCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIID------------ 249 (336)
Q Consensus 191 ~~~C~~C~G~G~~~~---------~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~~~~------------ 249 (336)
...|+.|+|+|.... ....+|+.|+|+|.++. .+|+.|+|.|.+...
T Consensus 156 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~~~V~Ip~G~~ 223 (378)
T PRK14278 156 PVTCDTCGGRGEVQTVQRSFLGQVMTSRPCPTCRGVGEVIP------------DPCHECAGDGRVRARREITVKIPAGVG 223 (378)
T ss_pred ceecCCccCceEEEEEEeccceeEEEEEECCCCCccceeeC------------CCCCCCCCceeEecceEEEEEECCCCC
Confidence 357999999997421 22568999999998764 679999999876430
Q ss_pred --------------------------------------------------eeeecCCceEEee--eeEEEEEeCCCCCCC
Q 019721 250 --------------------------------------------------HCRRCGGNGEVQS--KRSMKVVIPPGVSNG 277 (336)
Q Consensus 250 --------------------------------------------------~C~~C~g~g~~~~--~~~l~V~Ip~G~~~G 277 (336)
.=..+++...+.. ...++|.||+|+++|
T Consensus 224 ~G~~i~~~g~G~~~~~~~~~GDL~v~i~~~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tld~~~i~v~ip~g~~~g 303 (378)
T PRK14278 224 DGMRIRLAAQGEVGPGGGPAGDLYVEVHEQPHDVFVRDGDDLHCTVSVPMVDAALGTTVTVEAILDGPSEITIPPGTQPG 303 (378)
T ss_pred CCcEEEEccCcCCCCCCCCCCCEEEEEEECcCCCEEEcCCCEEEEEecCHHHHhcCCeEEEecCCCCeEEEEeCCCcCCC
Confidence 0112233333332 456799999999999
Q ss_pred cEEEEccCCCCCCCCCCCccEEEEEEEecCCCccccccceeeec
Q 019721 278 ATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKI 321 (336)
Q Consensus 278 ~~i~l~G~G~~~~~~g~~GDL~v~i~v~~~~~f~r~g~dL~~~~ 321 (336)
++++|+|+|++...++.+|||||+|+|..|..++.++..|+..+
T Consensus 304 ~~lrl~g~G~p~~~~~~~GDL~V~~~V~~P~~Ls~~qk~~l~~~ 347 (378)
T PRK14278 304 SVITLRGRGMPHLRSGGRGDLHAHVEVVVPTRLDHEDIELLREL 347 (378)
T ss_pred cEEEECCCCCCCCCCCCCCCEEEEEEEEcCCCCCHHHHHHHHHH
Confidence 99999999999655566899999999999998888777766554
No 61
>PRK14284 chaperone protein DnaJ; Provisional
Probab=99.48 E-value=3.7e-14 Score=138.19 Aligned_cols=119 Identities=27% Similarity=0.586 Sum_probs=89.5
Q ss_pred eeeCCCCCCCCccC-----CCCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCcceEEee----------------
Q 019721 191 FETCDSCGGTGAKS-----SNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIID---------------- 249 (336)
Q Consensus 191 ~~~C~~C~G~G~~~-----~~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~~~~---------------- 249 (336)
...|+.|+|+|... .+...+|+.|+|+|.++. .+|+.|+|.|.+...
T Consensus 175 ~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~ 242 (391)
T PRK14284 175 IKVCDRCKGSGQVVQSRGFFSMASTCPECGGEGRVIT------------DPCSVCRGQGRIKDKRSVHVHIPAGVDSGMR 242 (391)
T ss_pred CeecCccCCeeEEEEEeceEEEEEECCCCCCCCcccC------------CcCCCCCCcceecceEEEEEEECCCCCCCCE
Confidence 36799999998742 124568999999998754 679999998876320
Q ss_pred ----------------------------------------------eeeecCCceEEee---eeEEEEEeCCCCCCCcEE
Q 019721 250 ----------------------------------------------HCRRCGGNGEVQS---KRSMKVVIPPGVSNGATM 280 (336)
Q Consensus 250 ----------------------------------------------~C~~C~g~g~~~~---~~~l~V~Ip~G~~~G~~i 280 (336)
.=..+++...+.. ...++|+||+|+++|+++
T Consensus 243 i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~v~tld~g~~i~v~Ip~g~~~g~~~ 322 (391)
T PRK14284 243 LKMEGYGDAGQNGAPAGDLYVFIDVEPHPVFERRGDDLILELPIGFVDAALGMKKEIPTLLKEGTCRLTIPEGIQSGTIL 322 (391)
T ss_pred EEEeccccCCCCCCCCCCEEEEEEEecCCCceeecCCEEEEEEecHHHHhCCCeEEEeecCCCcEEEEEECCccCCCeEE
Confidence 0012233333332 257899999999999999
Q ss_pred EEccCCCCCCCCCCCccEEEEEEEecCCCccccccceeeec
Q 019721 281 QIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKI 321 (336)
Q Consensus 281 ~l~G~G~~~~~~g~~GDL~v~i~v~~~~~f~r~g~dL~~~~ 321 (336)
+|+|+|++...++.+|||||+|+|..|+.++.++.+|+..+
T Consensus 323 ~i~g~G~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~ll~~l 363 (391)
T PRK14284 323 KVRGQGFPNVHGKGRGDLLVRISVETPQNLSEEQKELLRQF 363 (391)
T ss_pred EECCCCCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHH
Confidence 99999999655557899999999999999998887776654
No 62
>PRK14286 chaperone protein DnaJ; Provisional
Probab=99.47 E-value=4e-14 Score=136.99 Aligned_cols=118 Identities=27% Similarity=0.544 Sum_probs=87.2
Q ss_pred eeCCCCCCCCccCC-----CCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCcceEEee-----------------
Q 019721 192 ETCDSCGGTGAKSS-----NCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIID----------------- 249 (336)
Q Consensus 192 ~~C~~C~G~G~~~~-----~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~~~~----------------- 249 (336)
..|+.|+|+|.... ....+|+.|+|+|+++. .+|+.|+|.|.+...
T Consensus 168 ~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i 235 (372)
T PRK14286 168 TTCPDCGGSGQIRRTQGFFSVATTCPTCRGKGTVIS------------NPCKTCGGQGLQEKRRTINIKIPPGVETGSRL 235 (372)
T ss_pred ccCCCCcCeEEEEEEeceEEEEEeCCCCCceeeEec------------ccCCCCCCCcEEecceEEEEEECCCCCCCCEE
Confidence 57999999986521 24568999999998764 579999998876430
Q ss_pred -------e---------------------ee-----------------ecCCceEEe--eeeEEEEEeCCCCCCCcEEEE
Q 019721 250 -------H---------------------CR-----------------RCGGNGEVQ--SKRSMKVVIPPGVSNGATMQI 282 (336)
Q Consensus 250 -------~---------------------C~-----------------~C~g~g~~~--~~~~l~V~Ip~G~~~G~~i~l 282 (336)
. .. .+++...+. +...++|+||+|+++|++++|
T Consensus 236 ~~~g~G~~~~~~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~~i~v~ip~g~~~g~~~ri 315 (372)
T PRK14286 236 KVSGEGEAGPNGGPHGDLYVVTHIKKHELFERQGNDLILVRKISLAQAILGAEIEVPTIDGKKAKMKIPEGTESGQVFRL 315 (372)
T ss_pred EECCccccCCCCCCCceEEEEEEEccCCCEEEecCCEEEEEEECHHHHhCCCEEEEeCCCCCEEEEEeCCccCCCcEEEE
Confidence 0 00 122222222 134579999999999999999
Q ss_pred ccCCCCCCCCCCCccEEEEEEEecCCCccccccceeeec
Q 019721 283 RGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKI 321 (336)
Q Consensus 283 ~G~G~~~~~~g~~GDL~v~i~v~~~~~f~r~g~dL~~~~ 321 (336)
+|+|++...++.+|||||+|+|..|..++.++.+|+..+
T Consensus 316 ~G~G~P~~~~~~~GDL~V~~~V~~P~~Ls~~qk~~l~~l 354 (372)
T PRK14286 316 KGHGMPYLGAYGKGDQHVIVKIEIPKKITRRQRELIEEF 354 (372)
T ss_pred CCCCCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHH
Confidence 999999655556899999999999999988887776554
No 63
>PRK14288 chaperone protein DnaJ; Provisional
Probab=99.46 E-value=9.1e-14 Score=134.37 Aligned_cols=120 Identities=30% Similarity=0.567 Sum_probs=89.1
Q ss_pred eeeeCCCCCCCCccC-----CCCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCcceEEee---------------
Q 019721 190 CFETCDSCGGTGAKS-----SNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIID--------------- 249 (336)
Q Consensus 190 ~~~~C~~C~G~G~~~-----~~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~~~~--------------- 249 (336)
....|+.|+|+|... .....+|+.|+|+|.++. .+|..|+|.|.+...
T Consensus 155 ~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~l~V~IP~G~~~G~ 222 (369)
T PRK14288 155 ALETCKQCNGQGQVFMRQGFMSFAQTCGACQGKGKIIK------------TPCQACKGKTYILKDEEIDAIIPEGIDDQN 222 (369)
T ss_pred CCcCCCCCCCCcEEEEEeceEEEEEecCCCCCCceEcc------------ccCccCCCcceEEEEEEEEEecCCCCCCCC
Confidence 357899999999752 123569999999998764 679999999876431
Q ss_pred -----------------------------e-----------------eeecCCceEEee--eeEEEEEeCCCCCCCcEEE
Q 019721 250 -----------------------------H-----------------CRRCGGNGEVQS--KRSMKVVIPPGVSNGATMQ 281 (336)
Q Consensus 250 -----------------------------~-----------------C~~C~g~g~~~~--~~~l~V~Ip~G~~~G~~i~ 281 (336)
. =..|++...+.. ...++|+||+|+++|++++
T Consensus 223 ~i~l~g~G~~~~~~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~i~v~tLdG~~l~i~i~~~~~~g~~~~ 302 (369)
T PRK14288 223 RMVLKNKGNEYEKGKRGDLYLEARVKEDEHFKREGCDLFIEAPVFFTTIALGHTIKVPSLKGDELELKIPRNARDRQTFA 302 (369)
T ss_pred EEEEccCccCCCCCCCCCEEEEEEEEECCCcEEeCCEEEEEEecCHHHHhcCCEEEeecCCCCEEEEEeCCCCCCCcEEE
Confidence 0 011223222222 2357999999999999999
Q ss_pred EccCCCCCCCCCCCccEEEEEEEecCCCccccccceeeec
Q 019721 282 IRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKI 321 (336)
Q Consensus 282 l~G~G~~~~~~g~~GDL~v~i~v~~~~~f~r~g~dL~~~~ 321 (336)
|+|+|++.......|||||+|+|+.|..++.++..++..+
T Consensus 303 i~g~G~p~~~~~~~GDL~v~~~v~~P~~ls~~q~~~l~~~ 342 (369)
T PRK14288 303 FRNEGVKHPESSYRGSLIVELQVIYPKSLNKEQQELLEKL 342 (369)
T ss_pred EcCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHH
Confidence 9999999654445799999999999999988876665543
No 64
>PRK14279 chaperone protein DnaJ; Provisional
Probab=99.46 E-value=9.9e-14 Score=135.09 Aligned_cols=118 Identities=25% Similarity=0.527 Sum_probs=88.2
Q ss_pred eeeCCCCCCCCccCC-----CCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCcceEEee----------------
Q 019721 191 FETCDSCGGTGAKSS-----NCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIID---------------- 249 (336)
Q Consensus 191 ~~~C~~C~G~G~~~~-----~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~~~~---------------- 249 (336)
...|+.|+|+|.... ....+|+.|+|+|+++. .+|..|+|.|.+...
T Consensus 190 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~i~------------~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~ 257 (392)
T PRK14279 190 PKVCPTCNGSGVISRNQGAFGFSEPCTDCRGTGSIIE------------DPCEECKGTGVTTRTRTINVRIPPGVEDGQR 257 (392)
T ss_pred CCCCCCCcceEEEEEEecceEEEEecCCCCceeEEeC------------CcCCCCCCCeEEEEeeeeEEEeCCCCCCCcE
Confidence 468999999998532 24679999999998865 679999999877530
Q ss_pred -----------------------------e-----------------eeecCCceEEee-eeEEEEEeCCCCCCCcEEEE
Q 019721 250 -----------------------------H-----------------CRRCGGNGEVQS-KRSMKVVIPPGVSNGATMQI 282 (336)
Q Consensus 250 -----------------------------~-----------------C~~C~g~g~~~~-~~~l~V~Ip~G~~~G~~i~l 282 (336)
. =..+++...+.. ...++|+||+|+++|++|+|
T Consensus 258 i~~~g~G~~~~~~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~v~~ldg~i~v~Ip~g~~~g~~iri 337 (392)
T PRK14279 258 IRLAGQGEAGLRGAPSGDLYVTVHVRPDKVFGRDGDDLTVTVPVSFTELALGSTLSVPTLDGPVGVKVPAGTADGRILRV 337 (392)
T ss_pred EEEeCCccCCCCCCCCCCEEEEEEEecCCcceeecCcEEEEEEccHHHHcCCceEEEEcCCceEEEEECCCCCCCCEEEE
Confidence 0 001222222221 22478999999999999999
Q ss_pred ccCCCCCCCCCCCccEEEEEEEecCCCccccccceeeec
Q 019721 283 RGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKI 321 (336)
Q Consensus 283 ~G~G~~~~~~g~~GDL~v~i~v~~~~~f~r~g~dL~~~~ 321 (336)
+|+|++. .++.+|||||+|+|..|..++.++..|+..+
T Consensus 338 ~g~G~p~-~~~~~GDL~I~~~v~~P~~Ls~~q~~~l~~~ 375 (392)
T PRK14279 338 RGRGVPK-RSGGAGDLLVTVKVAVPPNLDGAAAEALEAY 375 (392)
T ss_pred CCCCCCC-CCCCCCCEEEEEEEECCCCCCHHHHHHHHHH
Confidence 9999995 3456899999999999998888777766554
No 65
>PRK14281 chaperone protein DnaJ; Provisional
Probab=99.46 E-value=8.4e-14 Score=135.85 Aligned_cols=119 Identities=29% Similarity=0.497 Sum_probs=89.1
Q ss_pred eeeCCCCCCCCccCC---------CCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCcceEEee------------
Q 019721 191 FETCDSCGGTGAKSS---------NCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIID------------ 249 (336)
Q Consensus 191 ~~~C~~C~G~G~~~~---------~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~~~~------------ 249 (336)
...|+.|+|+|.... ..+.+|+.|+|+|.++. .+|+.|+|.|.+...
T Consensus 179 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~~~V~Ip~G~~ 246 (397)
T PRK14281 179 TETCPTCHGSGEVRQASKTMFGQFVNITACPTCGGEGRVVK------------DRCPACYGEGIKQGEVTVKVTVPAGVQ 246 (397)
T ss_pred CccCCCCCCCcEEEEEEecccceEEEEEecCCCcceeeeeC------------CCCCCCCCCccEecceEEEEecCCCCC
Confidence 468999999997522 13568999999998865 679999999886430
Q ss_pred --------------------------------------------------eeeecCCceEEee-eeEEEEEeCCCCCCCc
Q 019721 250 --------------------------------------------------HCRRCGGNGEVQS-KRSMKVVIPPGVSNGA 278 (336)
Q Consensus 250 --------------------------------------------------~C~~C~g~g~~~~-~~~l~V~Ip~G~~~G~ 278 (336)
.=..+++...+.. ...++|+||+|+++|+
T Consensus 247 ~G~~i~~~g~G~~~~~~~~~GDL~i~i~~~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldg~i~v~ip~g~~~G~ 326 (397)
T PRK14281 247 DGNYLTLRGQGNAGPRGGAPGDLIVVIEEKPHELFVRNGDDVIYNLAVSYPDLVLGTKVEVPTLDGAVKLTIPAGTQPET 326 (397)
T ss_pred CCCEEEEecccccCCCCCCCCcEEEEEEEcCCCCeEEecCCEEEEEEecHHHHhcCCeEEeecCCccEEEEeCCccCCCc
Confidence 0001233323222 2246899999999999
Q ss_pred EEEEccCCCCCCCCCCCccEEEEEEEecCCCccccccceeeec
Q 019721 279 TMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKI 321 (336)
Q Consensus 279 ~i~l~G~G~~~~~~g~~GDL~v~i~v~~~~~f~r~g~dL~~~~ 321 (336)
+++|+|+|++...++.+|||||+|+|..|..++.++..|+.++
T Consensus 327 ~~ri~g~G~P~~~~~~~GDL~V~~~V~~P~~Ls~~qk~~l~~l 369 (397)
T PRK14281 327 MLRIPGKGIGHLRGSGRGDQYVRVNVFVPKEVSHQDKELLKEL 369 (397)
T ss_pred EEEEcCCCCCCCCCCCCCCEEEEEEEEcCCCCCHHHHHHHHHH
Confidence 9999999999655556899999999999998887777666553
No 66
>PRK14287 chaperone protein DnaJ; Provisional
Probab=99.45 E-value=8.1e-14 Score=134.83 Aligned_cols=119 Identities=29% Similarity=0.563 Sum_probs=86.9
Q ss_pred eeeCCCCCCCCccCC---------CCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCcceEEee------------
Q 019721 191 FETCDSCGGTGAKSS---------NCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIID------------ 249 (336)
Q Consensus 191 ~~~C~~C~G~G~~~~---------~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~~~~------------ 249 (336)
...|+.|+|+|.... ....+|+.|.|+|.++. .+|..|+|.|.+...
T Consensus 155 ~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~l~V~Ip~G~~ 222 (371)
T PRK14287 155 PETCSHCGGSGQLNVEQNTPFGRVVNRRVCHHCEGTGKIIK------------QKCATCGGKGKVRKRKKINVKVPAGID 222 (371)
T ss_pred CcccCCCCCEEEEEEEEecCCceEEEEEeCCCCCCCCcccc------------ccCCCCCCeeEEeeeEEEEEEECCcCC
Confidence 467999999986522 12568999999998764 579999988865420
Q ss_pred --------------------------------------------------eeeecCCceEEee-eeEEEEEeCCCCCCCc
Q 019721 250 --------------------------------------------------HCRRCGGNGEVQS-KRSMKVVIPPGVSNGA 278 (336)
Q Consensus 250 --------------------------------------------------~C~~C~g~g~~~~-~~~l~V~Ip~G~~~G~ 278 (336)
.=..+++...+.. ...++|+||+|+++|+
T Consensus 223 ~G~~i~~~G~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~~ldg~i~v~ip~g~~~g~ 302 (371)
T PRK14287 223 HGQQLRVSGQGEAGVNGGPPGDLYVVFNVKPHEFFERDGDDIYCEMPLTFPQVALGDEIEVPTLNGKVKLKIPAGTQTGT 302 (371)
T ss_pred CCCEEEEccCCcCCCCCCCCccEEEEEEEecCCCEEEecCCeEEEEeccHHHHhCCCEEEEEcCCCCEEEEECCCccCCc
Confidence 0001222222222 1236899999999999
Q ss_pred EEEEccCCCCCCCCCCCccEEEEEEEecCCCccccccceeeec
Q 019721 279 TMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKI 321 (336)
Q Consensus 279 ~i~l~G~G~~~~~~g~~GDL~v~i~v~~~~~f~r~g~dL~~~~ 321 (336)
+++|+|+|++...++.+|||||+|+|..|+.+++++..|+.++
T Consensus 303 ~~ri~g~G~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~ll~~l 345 (371)
T PRK14287 303 SFRLRGKGVPNVHGRGQGDQHVQVRVVTPKNLTEKEKELMREF 345 (371)
T ss_pred EEEEcCCCccCCCCCCCCCEEEEEEEEcCCCCCHHHHHHHHHH
Confidence 9999999999655556899999999999999998887776654
No 67
>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=2.2e-14 Score=127.19 Aligned_cols=69 Identities=39% Similarity=0.679 Sum_probs=65.0
Q ss_pred ccccCcceecccCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhchhcccccccccC
Q 019721 41 AAGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFG 109 (336)
Q Consensus 41 ~~~~d~Y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~~~~~~~~f~~i~~Ay~vL~d~~~r~~YD~~G 109 (336)
+...|.|++|||+++|+.+||++|||+||+++|||+++++++.+.|..|..||++|.|.+.|..||-+-
T Consensus 30 CG~enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r~~e~k~~F~~iAtayeilkd~e~rt~ydyal 98 (329)
T KOG0722|consen 30 CGAENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNRDPESKKLFVKIATAYEILKDNETRTQYDYAL 98 (329)
T ss_pred ccchhHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccCCchhhhhhhhhhcccccccchhhHHhHHHHh
Confidence 456799999999999999999999999999999999999999999999999999999999999999643
No 68
>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation. DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.
Probab=99.44 E-value=1.9e-13 Score=99.58 Aligned_cols=65 Identities=48% Similarity=0.999 Sum_probs=54.3
Q ss_pred CCCCCCCCccCCCCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCcceEE-eeeeeecCCce
Q 019721 194 CDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKII-IDHCRRCGGNG 258 (336)
Q Consensus 194 C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~~-~~~C~~C~g~g 258 (336)
|+.|+|+|..+.....+|+.|+|+|.++..++.+++++++..+|+.|+|+|+++ .++|+.|+|.+
T Consensus 1 C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~i~~~~C~~C~G~g 66 (66)
T PF00684_consen 1 CPKCNGTGAKPGKKPKTCPQCNGSGQVTRRQQTPGGVFQMQQTCPKCGGTGKIIEKDPCKTCKGSG 66 (66)
T ss_dssp -CCCTTTSB-STTT-EE-TTSSSSSEEEEEEESSSTTEEEEEE-TTTSSSSEE-TSSB-SSSTTSS
T ss_pred CCcCCCcccCCCCCCcCCcCCCCeeEEEEEEeCCCeEEEEEEECCCCcceeeEECCCCCCCCCCcC
Confidence 899999999988899999999999999999888888888889999999999999 99999999864
No 69
>PRK14276 chaperone protein DnaJ; Provisional
Probab=99.44 E-value=1.1e-13 Score=134.48 Aligned_cols=57 Identities=19% Similarity=0.383 Sum_probs=48.7
Q ss_pred EEEEEeCCCCCCCcEEEEccCCCCCCCCCCCccEEEEEEEecCCCccccccceeeec
Q 019721 265 SMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKI 321 (336)
Q Consensus 265 ~l~V~Ip~G~~~G~~i~l~G~G~~~~~~g~~GDL~v~i~v~~~~~f~r~g~dL~~~~ 321 (336)
.++|+||+|+++|++++|+|+|++...++.+|||||+|+|..|..++.++..++.++
T Consensus 297 ~i~v~ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~~l~~~ 353 (380)
T PRK14276 297 DVELKIPAGTQTGKKFRLRGKGAPKLRGGGNGDQHVTVNIVTPTKLNDAQKEALKAF 353 (380)
T ss_pred cEEEEECCCCCCCCEEEECCCCcCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHH
Confidence 368999999999999999999999655556899999999999998887776665554
No 70
>PRK14280 chaperone protein DnaJ; Provisional
Probab=99.44 E-value=1.5e-13 Score=133.15 Aligned_cols=57 Identities=23% Similarity=0.427 Sum_probs=48.9
Q ss_pred EEEEEeCCCCCCCcEEEEccCCCCCCCCCCCccEEEEEEEecCCCccccccceeeec
Q 019721 265 SMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKI 321 (336)
Q Consensus 265 ~l~V~Ip~G~~~G~~i~l~G~G~~~~~~g~~GDL~v~i~v~~~~~f~r~g~dL~~~~ 321 (336)
.++|+||+|+++|++++|+|+|++...+..+|||||+|+|..|..++.++..++.++
T Consensus 294 ~i~v~ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~v~~~v~~P~~Ls~~q~~~l~~l 350 (376)
T PRK14280 294 KVKLKIPAGTQTGTQFRLKGKGVPNVRGYGQGDQYVVVRVVTPTKLTDRQKELLREF 350 (376)
T ss_pred eEEEEECCCCCCCcEEEEcCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999999999655556899999999999998887776665554
No 71
>PRK14296 chaperone protein DnaJ; Provisional
Probab=99.44 E-value=1.5e-13 Score=132.95 Aligned_cols=119 Identities=21% Similarity=0.515 Sum_probs=86.6
Q ss_pred eeeCCCCCCCCccCC---------CCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCcceEEee------------
Q 019721 191 FETCDSCGGTGAKSS---------NCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIID------------ 249 (336)
Q Consensus 191 ~~~C~~C~G~G~~~~---------~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~~~~------------ 249 (336)
...|+.|+|+|.... +.+.+|+.|+|+|.++. .+|+.|+|.|.+...
T Consensus 166 ~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~~~V~Ip~G~~ 233 (372)
T PRK14296 166 IHICNNCHGTGEVLVQKNMGFFQFQQSAKCNVCNGAGKIIK------------NKCKNCKGKGKYLERKKIEVNIPKGIR 233 (372)
T ss_pred CccCCCCCCCceEEEEEeccceEEEEEecCCCcCCcceeec------------ccccCCCCceEEEEEEEEEEEECCCCC
Confidence 367999999997632 23569999999998865 679999999876430
Q ss_pred ---------------------------------eee------------------ecCCceEEee-eeEEEEEeCCCCCCC
Q 019721 250 ---------------------------------HCR------------------RCGGNGEVQS-KRSMKVVIPPGVSNG 277 (336)
Q Consensus 250 ---------------------------------~C~------------------~C~g~g~~~~-~~~l~V~Ip~G~~~G 277 (336)
... .|++...+.. ...++|+||+++++|
T Consensus 234 ~G~~i~~~g~G~~~~~~~~~GDL~v~v~v~~h~~F~R~~G~DL~~~~~Isl~eAllG~~~~i~tldG~~~v~ip~~t~~g 313 (372)
T PRK14296 234 PNQQIKLSQKGHASLNNGVNGDLIIDIYLKESKVFEIINNNDILMTYNISYLDAILGNEIIIKTLDGDIKYKLPKSINSN 313 (372)
T ss_pred CCCEEEEeccccCCCCCCCCccEEEEEEEeCCCCEEEeCCCcEEEEEecCHHHHhCCCEEEeeCCCCCEEEEECCccCCC
Confidence 111 1222222221 123689999999999
Q ss_pred cEEEEccCCCCCC-CCCCCccEEEEEEEecCCCccccccceeeec
Q 019721 278 ATMQIRGEGNFDR-RRSLAGDLFVALHVDEKQGIHRDGLNLFSKI 321 (336)
Q Consensus 278 ~~i~l~G~G~~~~-~~g~~GDL~v~i~v~~~~~f~r~g~dL~~~~ 321 (336)
++++|+|+|+|.. ..+..|||||+|+|+.|..++.++..|+..+
T Consensus 314 ~~~ri~GkGmP~~~~~~~~GDL~V~~~V~~P~~Ls~~q~~~l~~l 358 (372)
T PRK14296 314 ELIIINNKGLYKSINKDKRGDLIIKVNIVVPKNLSKKEKELIEQI 358 (372)
T ss_pred cEEEEcCCCCCcCCCCCCcCCEEEEEEEECCCCCCHHHHHHHHHH
Confidence 9999999999843 3346799999999999998887777765543
No 72
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=99.44 E-value=1.1e-13 Score=133.31 Aligned_cols=118 Identities=31% Similarity=0.630 Sum_probs=86.0
Q ss_pred eeeCCCCCCCCccC---------CCCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCcceEEee------------
Q 019721 191 FETCDSCGGTGAKS---------SNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIID------------ 249 (336)
Q Consensus 191 ~~~C~~C~G~G~~~---------~~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~~~~------------ 249 (336)
...|+.|+|+|... .+...+|+.|.|+|+++. .+|+.|+|.|.+...
T Consensus 160 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~l~V~Ip~G~~ 227 (354)
T TIGR02349 160 PKTCPTCGGTGQVRRQQGTPFGFFQQQQTCPTCGGEGKIIK------------EPCSTCKGKGRVKERKTITVKIPAGVD 227 (354)
T ss_pred CccCCCCCCeeEEEEEEeccCCceEEEEecCCCCCcceecC------------CCCCCCCCCcEecccceEEEEECCCCC
Confidence 46799999998642 123568999999998764 579999998875430
Q ss_pred ------------e---------------------e-----------------eecCCceEEee-eeEEEEEeCCCCCCCc
Q 019721 250 ------------H---------------------C-----------------RRCGGNGEVQS-KRSMKVVIPPGVSNGA 278 (336)
Q Consensus 250 ------------~---------------------C-----------------~~C~g~g~~~~-~~~l~V~Ip~G~~~G~ 278 (336)
. . ..|++...+.. ...++|.||+|+++|+
T Consensus 228 ~G~~i~~~g~G~~~~~~~~~GDl~v~i~v~~h~~f~r~g~DL~~~~~isl~eAl~G~~~~i~~ldG~i~v~ip~g~~~g~ 307 (354)
T TIGR02349 228 TGQRLRVSGKGNAGENGGPNGDLYVVIRVKPHKIFERDGNDLYIEVPISFTQAILGGEIEVPTLDGDVKLKIPAGTQSGT 307 (354)
T ss_pred CCCEEEEecCccCCCCCCCCCCEEEEEEEecCcceEEecCCEEEEEEeCHHHHhCCCeEEEecCCceEEEEECCcccCCc
Confidence 0 0 01122222211 1257899999999999
Q ss_pred EEEEccCCCCCCCCCCCccEEEEEEEecCCCccccccceeee
Q 019721 279 TMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSK 320 (336)
Q Consensus 279 ~i~l~G~G~~~~~~g~~GDL~v~i~v~~~~~f~r~g~dL~~~ 320 (336)
+++|+|+|++...+..+|||||+|+|..|+.+++++.+++.+
T Consensus 308 ~~~i~g~G~p~~~~~~~GDL~i~~~v~~P~~l~~~~~~~l~~ 349 (354)
T TIGR02349 308 VFRLKGKGVPRLRGNGRGDLLVTVKVETPKNLSKEQKELLEE 349 (354)
T ss_pred EEEECCCCcCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHH
Confidence 999999999965555789999999999999999888776543
No 73
>PRK14295 chaperone protein DnaJ; Provisional
Probab=99.43 E-value=1.4e-13 Score=133.85 Aligned_cols=118 Identities=26% Similarity=0.554 Sum_probs=88.5
Q ss_pred eeeCCCCCCCCccCC-----CCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCcceEEee----------------
Q 019721 191 FETCDSCGGTGAKSS-----NCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIID---------------- 249 (336)
Q Consensus 191 ~~~C~~C~G~G~~~~-----~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~~~~---------------- 249 (336)
...|+.|+|+|.... ..+.+|+.|+|+|.++. .+|..|.|.|.+...
T Consensus 183 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~ 250 (389)
T PRK14295 183 PRVCPTCSGTGQVSRNSGGFSLSEPCPDCKGRGLIAD------------DPCLVCKGSGRAKSSRTMQVRIPAGVSDGQR 250 (389)
T ss_pred CcCCCCCCCEeEEEEEecceEEEEecCCCcceeEEec------------cCCCCCCCCceEeeeeEEEEEeCCCCCCCCE
Confidence 468999999987521 24579999999998865 679999999876430
Q ss_pred ----------------------------------------------eeeecCCceEEe--eeeEEEEEeCCCCCCCcEEE
Q 019721 250 ----------------------------------------------HCRRCGGNGEVQ--SKRSMKVVIPPGVSNGATMQ 281 (336)
Q Consensus 250 ----------------------------------------------~C~~C~g~g~~~--~~~~l~V~Ip~G~~~G~~i~ 281 (336)
.=..+++...+. ..+.++|+||+|+++|++|+
T Consensus 251 i~l~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~I~tldG~~~~v~ip~g~~~g~~ir 330 (389)
T PRK14295 251 IRLRGKGAPGERGGPAGDLYVVVHVDPHPVFGRSGDNLTVTVPVTFPEAALGAEVRVPTLGGPPVTVKLPPGTPNGRVLR 330 (389)
T ss_pred EEEcccccCCCCCCCCccEEEEEEEecCCCEEEecCCEEEEEeecHHHHhCCCeEEEECCCCCEEEEEECCccCCCcEEE
Confidence 000122332322 23468999999999999999
Q ss_pred EccCCCCCCCCCCCccEEEEEEEecCCCccccccceeeec
Q 019721 282 IRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKI 321 (336)
Q Consensus 282 l~G~G~~~~~~g~~GDL~v~i~v~~~~~f~r~g~dL~~~~ 321 (336)
|+|+|++. .++.+|||||+|+|..|..++.++..|+.++
T Consensus 331 i~G~G~p~-~~~~~GDL~i~~~v~~P~~Ls~~qk~~l~~l 369 (389)
T PRK14295 331 VRGKGAVR-KDGTRGDLLVTVEVAVPKDLSGKAREALEAF 369 (389)
T ss_pred ECCCCcCC-CCCCCCCEEEEEEEECCCCCCHHHHHHHHHH
Confidence 99999996 3456899999999999998888777766553
No 74
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=99.43 E-value=1.4e-13 Score=119.01 Aligned_cols=64 Identities=27% Similarity=0.444 Sum_probs=56.9
Q ss_pred cCcceecccCCC--CCHHHHHHHHHHHHHHhCCCCCCCc------chHHHHHHHHHHHHHhchhcccccccc
Q 019721 44 TDYYSTLNVRQN--ATLQEIKTSYRKLARKYHPDINKSP------GAEEKFKEISSAYEVLSDDEKRSVYDR 107 (336)
Q Consensus 44 ~d~Y~iLgv~~~--a~~~eIk~ayr~la~~~hPd~~~~~------~~~~~f~~i~~Ay~vL~d~~~r~~YD~ 107 (336)
.|||++|||++. ++..+|+++||+|++++|||+..+. .+.+.|..|++||++|+||.+|+.|+-
T Consensus 1 ~~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~Yll 72 (171)
T PRK05014 1 MDYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAEYLL 72 (171)
T ss_pred CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHHHHHH
Confidence 389999999996 6889999999999999999997532 156789999999999999999999984
No 75
>PRK14297 chaperone protein DnaJ; Provisional
Probab=99.42 E-value=1.7e-13 Score=133.05 Aligned_cols=118 Identities=26% Similarity=0.540 Sum_probs=86.0
Q ss_pred eeeCCCCCCCCccC---------CCCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCcceEEee------------
Q 019721 191 FETCDSCGGTGAKS---------SNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIID------------ 249 (336)
Q Consensus 191 ~~~C~~C~G~G~~~---------~~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~~~~------------ 249 (336)
...|+.|+|+|... .....+|+.|+|+|.++. .+|..|+|.|.+...
T Consensus 165 ~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~i~V~Ip~G~~ 232 (380)
T PRK14297 165 PKTCDKCGGTGQIRVQRNTPLGSFVSTTTCDKCGGSGKVIE------------DPCNKCHGKGKVRKNRKIKVNVPAGVD 232 (380)
T ss_pred CccCCCccCeEEEEEEEEcCCceeEEEEeCCCCCCCceEcC------------CCCCCCCCCeEEEeEeEEEEEeCCCCC
Confidence 46799999998652 123678999999998754 679999998854320
Q ss_pred ---------------------------------ee-----------------eecCCceEEee-eeEEEEEeCCCCCCCc
Q 019721 250 ---------------------------------HC-----------------RRCGGNGEVQS-KRSMKVVIPPGVSNGA 278 (336)
Q Consensus 250 ---------------------------------~C-----------------~~C~g~g~~~~-~~~l~V~Ip~G~~~G~ 278 (336)
.. ..+++...+.. ...++|+||+|+++|+
T Consensus 233 ~G~~I~l~g~G~~~~~~~~~GDL~v~v~v~~h~~f~R~G~DL~~~~~Isl~eAl~G~~~~i~~ldg~~~v~ip~g~~~g~ 312 (380)
T PRK14297 233 TGNVIPLRGQGEHGKNGGPTGDLYINIRVAPHKTFKRKGFDIYIDKHISFAKAALGTEIKVPTVDGEVKYEVPAGTQPGT 312 (380)
T ss_pred CCcEEEEecCccCCCCCCCCccEEEEEEEcCCCCEEEeCCCEEEEEEeCHHHHhCCCcEEEEcCCCcEEEEECCCcCCCC
Confidence 00 01222222222 2246899999999999
Q ss_pred EEEEccCCCCCCCCCCCccEEEEEEEecCCCccccccceeee
Q 019721 279 TMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSK 320 (336)
Q Consensus 279 ~i~l~G~G~~~~~~g~~GDL~v~i~v~~~~~f~r~g~dL~~~ 320 (336)
+++|+|+|++...++.+|||||+|+|..|..++.++..++..
T Consensus 313 ~~ri~g~G~p~~~~~~~GDL~v~~~v~~P~~ls~~q~~~l~~ 354 (380)
T PRK14297 313 VFRLKGKGVPRVNSTGRGNQYVTVIVDIPKKLNSKQKEALTM 354 (380)
T ss_pred EEEEcCCCcCCCCCCCCCcEEEEEEEEcCCCCCHHHHHHHHH
Confidence 999999999965556789999999999999888777666544
No 76
>PRK14293 chaperone protein DnaJ; Provisional
Probab=99.42 E-value=1.8e-13 Score=132.62 Aligned_cols=120 Identities=24% Similarity=0.514 Sum_probs=87.9
Q ss_pred eeeCCCCCCCCccC---------CCCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCcceEEee------------
Q 019721 191 FETCDSCGGTGAKS---------SNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIID------------ 249 (336)
Q Consensus 191 ~~~C~~C~G~G~~~---------~~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~~~~------------ 249 (336)
...|+.|+|+|... .+...+|..|.|.|+++. .+|..|+|.|.+...
T Consensus 160 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~~~V~IppG~~ 227 (374)
T PRK14293 160 PTTCSTCGGAGQVRRATRTPFGSFTQVSECPTCNGTGQVIE------------DPCDACGGQGVKQVTKKLKINIPAGVD 227 (374)
T ss_pred CeeCCCCCCcceEEEEEecCcceEEEEeeCCCCCcceeEec------------cCCCCCCCCcccccceEEEEEeCCCCC
Confidence 35799999999742 123468999999998764 679999998865320
Q ss_pred --------------------------------------------------eeeecCCceEEee-eeEEEEEeCCCCCCCc
Q 019721 250 --------------------------------------------------HCRRCGGNGEVQS-KRSMKVVIPPGVSNGA 278 (336)
Q Consensus 250 --------------------------------------------------~C~~C~g~g~~~~-~~~l~V~Ip~G~~~G~ 278 (336)
.=..|++...+.. ...++|+||+|+++|+
T Consensus 228 ~G~~i~l~g~G~~~~~~~~~GDL~v~v~v~~~~~f~r~g~DL~~~~~Isl~eAl~G~~~~i~~ldG~~~i~ip~~~~~g~ 307 (374)
T PRK14293 228 TGTRLRVSGEGDAGLRGGPPGDLYVYLFVKNDPEFRRDGINILSEIKISYLQAILGDTLEVDTVDGPVELTIPAGTQPNT 307 (374)
T ss_pred CCCEEEEccCccCCCCCCCCcCEEEEEEEeCCCccChhhhceEEEeccCHHHHhCCCEEEecCCCCCEEEEeCCCCCCCC
Confidence 0012233322222 1235899999999999
Q ss_pred EEEEccCCCCCCCC-CCCccEEEEEEEecCCCccccccceeeecc
Q 019721 279 TMQIRGEGNFDRRR-SLAGDLFVALHVDEKQGIHRDGLNLFSKIS 322 (336)
Q Consensus 279 ~i~l~G~G~~~~~~-g~~GDL~v~i~v~~~~~f~r~g~dL~~~~~ 322 (336)
+++|+|+|++...+ +..|||||+|+|..|+.+++++.+|+.++.
T Consensus 308 ~~ri~g~G~p~~~~~~~~GDL~v~~~v~~P~~l~~~~~~l~~~l~ 352 (374)
T PRK14293 308 VLTLENKGVPRLGNPVARGDHLITVKVKIPTRISDEERELLEKLA 352 (374)
T ss_pred EEEECCCCCCCCCCCCCcCCEEEEEEEECCCCCCHHHHHHHHHHH
Confidence 99999999986443 357999999999999999999988876643
No 77
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=99.42 E-value=1.3e-13 Score=118.41 Aligned_cols=64 Identities=30% Similarity=0.450 Sum_probs=56.4
Q ss_pred cCcceecccCCC--CCHHHHHHHHHHHHHHhCCCCCCCcc----hHHHHHHHHHHHHHhchhcccccccc
Q 019721 44 TDYYSTLNVRQN--ATLQEIKTSYRKLARKYHPDINKSPG----AEEKFKEISSAYEVLSDDEKRSVYDR 107 (336)
Q Consensus 44 ~d~Y~iLgv~~~--a~~~eIk~ayr~la~~~hPd~~~~~~----~~~~f~~i~~Ay~vL~d~~~r~~YD~ 107 (336)
.|||++|||++. ++.++|+++||+|+++||||++.+.. +.+.+..|++||++|+||.+|+.|+.
T Consensus 2 ~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp~~Ra~YlL 71 (166)
T PRK01356 2 QNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDALKRAEYML 71 (166)
T ss_pred CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 589999999997 78999999999999999999986421 33457899999999999999999985
No 78
>PRK14277 chaperone protein DnaJ; Provisional
Probab=99.42 E-value=2e-13 Score=132.83 Aligned_cols=119 Identities=29% Similarity=0.582 Sum_probs=86.8
Q ss_pred eeeCCCCCCCCccCC---------CCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCcceEEee------------
Q 019721 191 FETCDSCGGTGAKSS---------NCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIID------------ 249 (336)
Q Consensus 191 ~~~C~~C~G~G~~~~---------~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~~~~------------ 249 (336)
...|+.|+|+|.... ....+|+.|+|+|.++. .+|..|+|.|.+...
T Consensus 172 ~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~l~V~Ip~G~~ 239 (386)
T PRK14277 172 PVTCPVCHGTGQVRTRQNTPFGRIVNIRTCDRCHGEGKIIT------------DPCNKCGGTGRIRRRRKIKVNIPAGID 239 (386)
T ss_pred CccCCCCCCEEEEEEEEeccCceEEEEEECCCCCcceeecc------------CCCCCCCCCcEEeeeeEEEEecCCCcc
Confidence 467999999987521 22468999999998764 679999999876430
Q ss_pred --------------------------------------------------eeeecCCceEEee-eeEEEEEeCCCCCCCc
Q 019721 250 --------------------------------------------------HCRRCGGNGEVQS-KRSMKVVIPPGVSNGA 278 (336)
Q Consensus 250 --------------------------------------------------~C~~C~g~g~~~~-~~~l~V~Ip~G~~~G~ 278 (336)
.=..|++...+.. ...++|.||+|+++|+
T Consensus 240 ~G~~i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~~~v~ip~g~~~g~ 319 (386)
T PRK14277 240 DGQMITLRGEGEPGIKGGPNGDLYIVIKVKPHPLFKREGYNVYLEMPITFTDAALGGEIEIPTLDGKVKFTIPEGTQTGT 319 (386)
T ss_pred CCcEEEEccccccCCCCCCCccEEEEEEEecCCCeEEecCCEEEEEEcCHHHHhCCCEEEEEcCCCCEEEEECCCCCCCC
Confidence 0001222222211 1236899999999999
Q ss_pred EEEEccCCCCCCCCCCCccEEEEEEEecCCCccccccceeeec
Q 019721 279 TMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKI 321 (336)
Q Consensus 279 ~i~l~G~G~~~~~~g~~GDL~v~i~v~~~~~f~r~g~dL~~~~ 321 (336)
+++|+|+|++...++..|||||+|+|..|..++.++.+++..+
T Consensus 320 ~~ri~g~G~p~~~~~~~GDL~v~~~V~~P~~Ls~~qk~~l~~l 362 (386)
T PRK14277 320 KFRLRGKGIPHLRGRGRGDQIVKVYIEVPKKLTEKQKELLREF 362 (386)
T ss_pred EEEECCCCCCCCCCCCCCCEEEEEEEEeCCCCCHHHHHHHHHH
Confidence 9999999999655556899999999999998888877766554
No 79
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=99.41 E-value=3.2e-13 Score=132.16 Aligned_cols=120 Identities=23% Similarity=0.451 Sum_probs=87.1
Q ss_pred eeeCCCCCCCCccC---------CCCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCcceEEee------------
Q 019721 191 FETCDSCGGTGAKS---------SNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIID------------ 249 (336)
Q Consensus 191 ~~~C~~C~G~G~~~---------~~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~~~~------------ 249 (336)
...|+.|+|+|... .....+|+.|+|+|.++... .+|..|+|.|.+...
T Consensus 166 ~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~i~~~----------~~C~~C~G~g~v~~~~~l~V~Ip~G~~ 235 (421)
T PTZ00037 166 FVDCKLCNGQGIRVQIRQMGSMIHQTQSTCNSCNGQGKIIPES----------KKCKNCSGKGVKKTRKILEVNIDKGVP 235 (421)
T ss_pred CccCCCCCCCCeEEEEEeecceeeEEEEeCCCCCCcceecccc----------ccCCcCCCcceeeeeeEEEEeeCCCCC
Confidence 46899999999631 12356999999999876522 579999999876530
Q ss_pred -------------------------------------------------eeeecCCceEEe--eeeEEEEEeCCC--CCC
Q 019721 250 -------------------------------------------------HCRRCGGNGEVQ--SKRSMKVVIPPG--VSN 276 (336)
Q Consensus 250 -------------------------------------------------~C~~C~g~g~~~--~~~~l~V~Ip~G--~~~ 276 (336)
.=..|++...+. +...|+|+||+| +++
T Consensus 236 dG~~I~~~G~Gd~~~~~~pGDLiv~I~~~ph~~F~R~G~DL~~~~~Isl~eAllG~~i~I~tLdG~~l~I~ip~g~vt~p 315 (421)
T PTZ00037 236 NQHKITFHGEADEKPNEIPGNVVFILNEKPHDTFKREGGDLFITKKISLYEALTGFVFYITHLDGRKLLVNTPPGEVVKP 315 (421)
T ss_pred CCcEEEEecccCCCCCCCCCcEEEEEEecCCCCcEEeCCeEEEEEeCCHHHHhcCCEEEeeCCCCCeEEEEeCCCcccCC
Confidence 011233333332 234578999999 999
Q ss_pred CcEEEEccCCCCCCCC-CCCccEEEEEEEecC--CCccccccceeee
Q 019721 277 GATMQIRGEGNFDRRR-SLAGDLFVALHVDEK--QGIHRDGLNLFSK 320 (336)
Q Consensus 277 G~~i~l~G~G~~~~~~-g~~GDL~v~i~v~~~--~~f~r~g~dL~~~ 320 (336)
|++++|+|+|+|...+ +..|||||+|+|..| ..++.+...|+..
T Consensus 316 g~~~~I~geGmP~~~~~~~rGDL~V~~~V~~P~~~~Ls~~qk~ll~~ 362 (421)
T PTZ00037 316 GDIKVINNEGMPTYKSPFKKGNLYVTFEVIFPVDRKFTNEEKEILKS 362 (421)
T ss_pred CcEEEeCCCCcccCCCCCCCCCEEEEEEEEcCCCCCCCHHHHHHHHH
Confidence 9999999999996443 467999999999999 7787766655544
No 80
>PRK14289 chaperone protein DnaJ; Provisional
Probab=99.40 E-value=2.7e-13 Score=131.96 Aligned_cols=118 Identities=29% Similarity=0.561 Sum_probs=86.2
Q ss_pred eeeCCCCCCCCccCC---------CCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCcceEEee------------
Q 019721 191 FETCDSCGGTGAKSS---------NCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIID------------ 249 (336)
Q Consensus 191 ~~~C~~C~G~G~~~~---------~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~~~~------------ 249 (336)
...|+.|+|+|.... ....+|+.|+|+|+++. ..|..|+|.|.+...
T Consensus 171 ~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~~~V~Ip~G~~ 238 (386)
T PRK14289 171 SETCPTCKGSGSVTRVQNTILGTMQTQSTCPTCNGEGKIIK------------KKCKKCGGEGIVYGEEVITVKIPAGVA 238 (386)
T ss_pred CCcCCCCcCeEEEEEEEecccceEEEEEecCCCCccccccC------------cCCCCCCCCcEEeeeEEEEEEeCCCCC
Confidence 467999999987532 23578999999997754 679999999876430
Q ss_pred --------------------------------------------------eeeecCCceEEee-eeEEEEEeCCCCCCCc
Q 019721 250 --------------------------------------------------HCRRCGGNGEVQS-KRSMKVVIPPGVSNGA 278 (336)
Q Consensus 250 --------------------------------------------------~C~~C~g~g~~~~-~~~l~V~Ip~G~~~G~ 278 (336)
.=..+++...+.. ...++|.||+|+++|+
T Consensus 239 ~G~~i~l~g~G~~~~~~~~~GDL~v~v~v~~~~~f~r~g~DL~~~~~Isl~eAl~G~~~~i~~ldg~i~v~ip~g~~~g~ 318 (386)
T PRK14289 239 EGMQLSMNGKGNAGKHGGVNGDLLVVIEEEPHPELIRDENDLIYNLLLSVPTAALGGAVEVPTIDGKAKVKIEAGTQPGK 318 (386)
T ss_pred CCCEEEEeccccCCCCCCCCccEEEEEEEecCCcccccccceeEEeccCHHHHhCCCeEEeecCCceEEEEECCccCCCc
Confidence 0011223323322 2346899999999999
Q ss_pred EEEEccCCCCCCCCCCCccEEEEEEEecCCCccccccceeee
Q 019721 279 TMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSK 320 (336)
Q Consensus 279 ~i~l~G~G~~~~~~g~~GDL~v~i~v~~~~~f~r~g~dL~~~ 320 (336)
+++|+|+|++...++.+|||||+|+|+.|..++.++..|+..
T Consensus 319 ~~ri~g~G~p~~~~~~~GDL~v~~~v~~P~~l~~~q~~~l~~ 360 (386)
T PRK14289 319 VLRLRNKGLPSVNGYGTGDLLVNVSVYIPETLSKEEKQTLEK 360 (386)
T ss_pred EEEECCCCcCCCCCCCCCcEEEEEEEEeCCCCCHHHHHHHHH
Confidence 999999999865556789999999999998887776665544
No 81
>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=1.9e-13 Score=130.60 Aligned_cols=66 Identities=41% Similarity=0.572 Sum_probs=64.1
Q ss_pred ccCcceecccCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhchhccccccccc
Q 019721 43 GTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRF 108 (336)
Q Consensus 43 ~~d~Y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~~~~~~~~f~~i~~Ay~vL~d~~~r~~YD~~ 108 (336)
.+|.|.+|||++++++++|||.|||+|+.-|||||..+.|+|.|+.+..|||+|+|+++|..||.-
T Consensus 234 ~~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~~~~A~Eafk~Lq~Afevig~~~kR~eYd~e 299 (490)
T KOG0720|consen 234 ILDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNMIPRAEEAFKKLQVAFEVIGDSVKRKEYDLE 299 (490)
T ss_pred CCCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccCChhHHHHHHHHHHHHHHhcchhhhhHHHHH
Confidence 679999999999999999999999999999999999999999999999999999999999999973
No 82
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=99.38 E-value=5e-13 Score=115.43 Aligned_cols=66 Identities=26% Similarity=0.411 Sum_probs=58.8
Q ss_pred cccCcceecccCCC--CCHHHHHHHHHHHHHHhCCCCCCCc------chHHHHHHHHHHHHHhchhcccccccc
Q 019721 42 AGTDYYSTLNVRQN--ATLQEIKTSYRKLARKYHPDINKSP------GAEEKFKEISSAYEVLSDDEKRSVYDR 107 (336)
Q Consensus 42 ~~~d~Y~iLgv~~~--a~~~eIk~ayr~la~~~hPd~~~~~------~~~~~f~~i~~Ay~vL~d~~~r~~YD~ 107 (336)
...|||++|||++. .+..+|+++||+|++++|||++... .+.+.|..||+||++|+||.+|+.|+.
T Consensus 2 ~~~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra~YlL 75 (173)
T PRK00294 2 GTPCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARYLL 75 (173)
T ss_pred CCCChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhHHHHH
Confidence 46799999999998 5689999999999999999997532 256789999999999999999999995
No 83
>PRK14291 chaperone protein DnaJ; Provisional
Probab=99.38 E-value=4.8e-13 Score=130.02 Aligned_cols=118 Identities=32% Similarity=0.601 Sum_probs=83.8
Q ss_pred eeeCCCCCCCCccC-----CCCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCcceEEee----------------
Q 019721 191 FETCDSCGGTGAKS-----SNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIID---------------- 249 (336)
Q Consensus 191 ~~~C~~C~G~G~~~-----~~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~~~~---------------- 249 (336)
...|+.|+|+|... .....+|+.|+|+|. +. .+|..|+|.|.+...
T Consensus 173 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~-~~------------~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~ 239 (382)
T PRK14291 173 EKVCPTCGGSGEIYQRGGFFRISQTCPTCGGEGV-LR------------EPCSKCNGRGLVIKKETIKVRIPPGVDNGSK 239 (382)
T ss_pred CccCCCCCCceEEEEecceEEEEecCCCCCCceE-Ec------------cCCCCCCCCceEEeeeEEEEEeCCCCCCCCE
Confidence 46799999998752 234679999999994 32 579999999876430
Q ss_pred -----------------------------ee-----------------eecCCceEEe--eeeEEEEEeCCCCCCCcEEE
Q 019721 250 -----------------------------HC-----------------RRCGGNGEVQ--SKRSMKVVIPPGVSNGATMQ 281 (336)
Q Consensus 250 -----------------------------~C-----------------~~C~g~g~~~--~~~~l~V~Ip~G~~~G~~i~ 281 (336)
.. ..+++...+. +...++|.||+|+++|++|+
T Consensus 240 i~~~g~G~~~~~g~~~GDL~v~i~~~~h~~F~r~G~DL~~~~~Isl~eAl~G~~~~i~~ldG~~l~V~Ip~g~~~G~~i~ 319 (382)
T PRK14291 240 LRVPGKGHAGRFGGPPGDLYIIVKVKPHPLFERRGDNLYLDVNITVAEAVLGTELEVPLLDGKKEKVKIPPGTKEGDKIR 319 (382)
T ss_pred EEEecCcCCCCCCCCCccEEEEEEEccCCCeeeecCCeEEEEEeeHHHHhCCCEEEEecCCCCEEEEEECCccCCCCEEE
Confidence 00 0122222222 23457999999999999999
Q ss_pred EccCCCCCCCCCCCccEEEEEEEecCC--Ccc------ccccceeeec
Q 019721 282 IRGEGNFDRRRSLAGDLFVALHVDEKQ--GIH------RDGLNLFSKI 321 (336)
Q Consensus 282 l~G~G~~~~~~g~~GDL~v~i~v~~~~--~f~------r~g~dL~~~~ 321 (336)
|+|+|++...+..+|||||+|+|..|. .++ .+...|+..+
T Consensus 320 i~G~G~p~~~~~~~GDL~V~~~V~~P~~~~ls~~~~~~~~~~~~~~~l 367 (382)
T PRK14291 320 VPGKGMPRLKGSGYGDLVVRVHIDVPKISMLSKLMGDGKKAKKLLKEL 367 (382)
T ss_pred ECCCCCCCCCCCCCCCEEEEEEEEeCCCcCcCccccCCHHHHHHHHHH
Confidence 999999965555689999999999996 366 4444455443
No 84
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=99.37 E-value=4.9e-13 Score=106.98 Aligned_cols=52 Identities=23% Similarity=0.410 Sum_probs=47.9
Q ss_pred ccCcceecccCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhc
Q 019721 43 GTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLS 97 (336)
Q Consensus 43 ~~d~Y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~~~~~~~~f~~i~~Ay~vL~ 97 (336)
..++|+||||+++||.+||+++||+|++++|||++ ++.+.|++|++||++|.
T Consensus 64 ~~eAy~ILGv~~~As~~eIkkaYRrLa~~~HPDkg---Gs~~~~~kIneAyevL~ 115 (116)
T PTZ00100 64 KSEAYKILNISPTASKERIREAHKQLMLRNHPDNG---GSTYIASKVNEAKDLLL 115 (116)
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCC---CCHHHHHHHHHHHHHHh
Confidence 46999999999999999999999999999999985 45678999999999985
No 85
>PRK14283 chaperone protein DnaJ; Provisional
Probab=99.37 E-value=6.5e-13 Score=128.95 Aligned_cols=119 Identities=28% Similarity=0.587 Sum_probs=85.9
Q ss_pred eeeCCCCCCCCccCC---------CCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCcceEEee------------
Q 019721 191 FETCDSCGGTGAKSS---------NCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIID------------ 249 (336)
Q Consensus 191 ~~~C~~C~G~G~~~~---------~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~~~~------------ 249 (336)
...|+.|+|+|.... ....+|..|.|+|+.+. .+|..|+|.|.+...
T Consensus 163 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~l~V~IppG~~ 230 (378)
T PRK14283 163 VKTCPTCGGTGQVKQVRNTILGQMMNVTTCPDCQGEGKIVE------------KPCSNCHGKGVVRETKTISVKIPAGVE 230 (378)
T ss_pred CccCCCcCCccEEEEEEeccCceEEEEEECCCCCccceecC------------CCCCCCCCceeeccceeEEEEECCCCC
Confidence 357999999988531 23568999999998754 679999998865320
Q ss_pred ---------------------------------eee-----------------ecCCceEEee-eeEEEEEeCCCCCCCc
Q 019721 250 ---------------------------------HCR-----------------RCGGNGEVQS-KRSMKVVIPPGVSNGA 278 (336)
Q Consensus 250 ---------------------------------~C~-----------------~C~g~g~~~~-~~~l~V~Ip~G~~~G~ 278 (336)
... .+++...+.. ...++|.||+|+++|+
T Consensus 231 ~G~~i~l~g~G~~~~~~~~~GDLiv~i~v~~~~~f~r~G~DL~~~~~Isl~eAl~G~~~~i~tldG~i~v~ip~g~~~g~ 310 (378)
T PRK14283 231 TGSRLRVSGEGEMGDRGGEPGDLYVVIKVKPHKIFRREGANLYYEKPISFVQAALGDTVDVPTIDGPVELKIPAGTQSGT 310 (378)
T ss_pred CCcEEEEeccccCCCCCCCCccEEEEEEEEcCCCEEEecCCEEEEEecCHHHHhcCCeEEEEcCCceEEEEeCCCCCCCC
Confidence 000 1122222221 2257899999999999
Q ss_pred EEEEccCCCCCCCCCCCccEEEEEEEecCCCccccccceeeec
Q 019721 279 TMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKI 321 (336)
Q Consensus 279 ~i~l~G~G~~~~~~g~~GDL~v~i~v~~~~~f~r~g~dL~~~~ 321 (336)
+++|+|+|++....+.+|||||+|+|..|..++.++..|+.++
T Consensus 311 ~~ri~g~G~p~~~~~~~GdL~v~~~v~~P~~l~~~q~~ll~~~ 353 (378)
T PRK14283 311 TFRLKGHGMPSLRWSGKGNLYVKVKVVVPKKLSPKQKELLREF 353 (378)
T ss_pred EEEECCCCCCCCCCCCCCCEEEEEEEEeCCCCCHHHHHHHHHH
Confidence 9999999998655556899999999999988887776665543
No 86
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=99.37 E-value=6.1e-13 Score=115.35 Aligned_cols=68 Identities=24% Similarity=0.304 Sum_probs=58.0
Q ss_pred ccCcceecccCCC--CCHHHHHHHHHHHHHHhCCCCCCC-cc-----hHHHHHHHHHHHHHhchhcccccccc--cCC
Q 019721 43 GTDYYSTLNVRQN--ATLQEIKTSYRKLARKYHPDINKS-PG-----AEEKFKEISSAYEVLSDDEKRSVYDR--FGE 110 (336)
Q Consensus 43 ~~d~Y~iLgv~~~--a~~~eIk~ayr~la~~~hPd~~~~-~~-----~~~~f~~i~~Ay~vL~d~~~r~~YD~--~G~ 110 (336)
..|||++|||++. ++..+|+++||+|+++||||++.. +. +.+.+..||+||++|+||.+|+.|+. .|.
T Consensus 5 ~~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~Yll~l~G~ 82 (176)
T PRK03578 5 KDDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYLLHLRGV 82 (176)
T ss_pred CCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHHHhcCC
Confidence 4799999999996 689999999999999999999863 33 33446899999999999999999994 454
No 87
>PRK14292 chaperone protein DnaJ; Provisional
Probab=99.35 E-value=1e-12 Score=127.42 Aligned_cols=56 Identities=18% Similarity=0.346 Sum_probs=48.8
Q ss_pred EEEEeCCCCCCCcEEEEccCCCCCCCCCCCccEEEEEEEecCCCccccccceeeec
Q 019721 266 MKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKI 321 (336)
Q Consensus 266 l~V~Ip~G~~~G~~i~l~G~G~~~~~~g~~GDL~v~i~v~~~~~f~r~g~dL~~~~ 321 (336)
++|.||+|+++|++++|+|+|++...+..+|||||+|+|+.|+.++.+...|+..+
T Consensus 290 ~~v~ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~ll~~~ 345 (371)
T PRK14292 290 QVIEVKPGTQHGDLHRLRGQGMPRLQGAGTGDLIVEYEIAVPKQLSPEAREALEAY 345 (371)
T ss_pred EEEecCCCcCCCcEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHH
Confidence 37999999999999999999999765566899999999999999988877766544
No 88
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=99.27 E-value=3.3e-12 Score=118.12 Aligned_cols=58 Identities=40% Similarity=0.527 Sum_probs=51.6
Q ss_pred cccCcceecccCCCCCHHHHHHHHHHHHHHhCCCCCCC--------cchHHHHHHHHHHHHHhchh
Q 019721 42 AGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKS--------PGAEEKFKEISSAYEVLSDD 99 (336)
Q Consensus 42 ~~~d~Y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~~--------~~~~~~f~~i~~Ay~vL~d~ 99 (336)
...|+|++|||+++||.+|||+|||+|+++||||+..+ +.++++|++|++||++|+..
T Consensus 198 ~~~~ay~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~~ 263 (267)
T PRK09430 198 TLEDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKKQ 263 (267)
T ss_pred cHHhHHHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHh
Confidence 44799999999999999999999999999999999642 24789999999999999853
No 89
>PHA02624 large T antigen; Provisional
Probab=99.24 E-value=4.8e-12 Score=126.63 Aligned_cols=61 Identities=28% Similarity=0.498 Sum_probs=56.8
Q ss_pred cccCcceecccCCCC--CHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhchhcccccc
Q 019721 42 AGTDYYSTLNVRQNA--TLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVY 105 (336)
Q Consensus 42 ~~~d~Y~iLgv~~~a--~~~eIk~ayr~la~~~hPd~~~~~~~~~~f~~i~~Ay~vL~d~~~r~~Y 105 (336)
...++|++|||+++| +.+|||+|||++|++||||++ +++++|++|++||++|+|+.+|..|
T Consensus 9 e~~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKg---Gdeekfk~Ln~AYevL~d~~k~~r~ 71 (647)
T PHA02624 9 ESKELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKG---GDEEKMKRLNSLYKKLQEGVKSARQ 71 (647)
T ss_pred HHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCC---CcHHHHHHHHHHHHHHhcHHHhhhc
Confidence 346899999999999 999999999999999999996 4568999999999999999999998
No 90
>PF01556 CTDII: DnaJ C terminal domain; InterPro: IPR002939 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolizing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. Thus, DnaK and DnaJ may bind to one and the same polypeptide chain to form a ternary complex. The formation of a ternary complex may result in cis-interaction of the J-domain of DnaJ with the ATPase domain of DnaK. An unfolded polypeptide may enter the chaperone cycle by associating first either with ATP-liganded DnaK or with DnaJ. DnaK interacts with both the backbone and side chains of a peptide substrate; it thus shows binding polarity and admits only L-peptide segments. In contrast, DnaJ has been shown to bind both L- and D-peptides and is assumed to interact only with the side chains of the substrate. This domain consists of the C-terminal region of the DnaJ protein. The function of this domain is unknown. It is found associated with IPR001623 from INTERPRO and IPR001305 from INTERPRO. ; GO: 0051082 unfolded protein binding, 0006457 protein folding; PDB: 2Q2G_A 2QLD_A 3AGX_A 3AGZ_A 3AGY_A 3I38_J 3LZ8_B 2B26_B 1C3G_A 1XAO_B ....
Probab=99.20 E-value=1.5e-11 Score=93.37 Aligned_cols=53 Identities=26% Similarity=0.548 Sum_probs=41.4
Q ss_pred eEEEEEeCCCCCCCcEEEEccCCCCCCCCC-CCccEEEEEEEecCCCccccccc
Q 019721 264 RSMKVVIPPGVSNGATMQIRGEGNFDRRRS-LAGDLFVALHVDEKQGIHRDGLN 316 (336)
Q Consensus 264 ~~l~V~Ip~G~~~G~~i~l~G~G~~~~~~g-~~GDL~v~i~v~~~~~f~r~g~d 316 (336)
+.++|.||+|+++|++++++|+|++...++ .+|||||+|+|..|..++.++..
T Consensus 27 ~~~~i~ip~~~~~g~~~~i~g~G~p~~~~~~~~GdL~v~~~V~~P~~ls~~qk~ 80 (81)
T PF01556_consen 27 KTIKIKIPPGTQPGQQLRIKGKGMPKPKGGGKRGDLIVKFEVEFPKKLSPEQKE 80 (81)
T ss_dssp -EEEEEETST-STT-EEEETTESEEESSSTTSBEEEEEEEEEE--SSTSHHHHH
T ss_pred CEEEEeccCccCCCcEEeecCCCCCcCCCCCCcCCEEEEEEEECCCCCCHHHhc
Confidence 578899999999999999999999865554 79999999999999988766543
No 91
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=99.14 E-value=1.9e-11 Score=116.43 Aligned_cols=70 Identities=37% Similarity=0.667 Sum_probs=64.0
Q ss_pred cccCcceecccCCCCCHHHHHHHHHHHHHHhCCCCCCC------cchHHHHHHHHHHHHHhchhcccccccccCCC
Q 019721 42 AGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKS------PGAEEKFKEISSAYEVLSDDEKRSVYDRFGEA 111 (336)
Q Consensus 42 ~~~d~Y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~~------~~~~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~ 111 (336)
...|+|+||||+.+++..+||++||+|.+|+|||+-+. .+-++.+++|++||+.|+|...|+.|-.||.-
T Consensus 96 ~~fDPyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~renyl~yGtP 171 (610)
T COG5407 96 RGFDPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRRENYLNYGTP 171 (610)
T ss_pred cCCChHHhhcccCCCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCCC
Confidence 45799999999999999999999999999999999654 24678999999999999999999999999864
No 92
>PRK14299 chaperone protein DnaJ; Provisional
Probab=98.95 E-value=7.2e-10 Score=104.03 Aligned_cols=87 Identities=16% Similarity=0.302 Sum_probs=73.3
Q ss_pred CCCCcceEEEEeecceeeeeceEEEEEeeeeeeCCCCCCCCccCCCCcccCCCCCCccEEEEeeecCCcceeeeecCCCC
Q 019721 161 GNFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKC 240 (336)
Q Consensus 161 ~~~g~di~~~l~vslee~~~G~~~~v~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C 240 (336)
.++|.||.+++.|||.+|+.|+++.|...
T Consensus 197 ~R~G~DL~~~~~Isl~eAl~G~~~~v~tl--------------------------------------------------- 225 (291)
T PRK14299 197 RLEGDDLYATVDVPAPIAVVGGKVRVMTL--------------------------------------------------- 225 (291)
T ss_pred EEECCEEEEEEecCHHHHhCCCEEEEECC---------------------------------------------------
Confidence 35688999999999999999998776532
Q ss_pred CCcceEEeeeeeecCCceEEeeeeEEEEEeCCCCCCCcEEEEccCCCCCCCCCCCccEEEEEEEecCCCccccccceeee
Q 019721 241 GGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSK 320 (336)
Q Consensus 241 ~G~G~~~~~~C~~C~g~g~~~~~~~l~V~Ip~G~~~G~~i~l~G~G~~~~~~g~~GDL~v~i~v~~~~~f~r~g~dL~~~ 320 (336)
...++|+||+++++|++++|+|+|++.. ++..|||||+|+|..|+.++.++.+++..
T Consensus 226 ----------------------dG~~~v~ip~~~~~g~~~rl~g~G~p~~-~~~~GDL~v~~~V~~P~~l~~~~~~~l~~ 282 (291)
T PRK14299 226 ----------------------DGPVEVTIPPRTQAGRKLRLKGKGWPRG-PAGRGDQYAEVRITIPTRPTPEEERLYKQ 282 (291)
T ss_pred ----------------------CCCEEEEeCCCcCCCCEEEECCCCCCCC-CCCCCCEEEEEEEECCCCCCHHHHHHHHH
Confidence 1237899999999999999999999953 45689999999999999999998887655
Q ss_pred c
Q 019721 321 I 321 (336)
Q Consensus 321 ~ 321 (336)
+
T Consensus 283 l 283 (291)
T PRK14299 283 L 283 (291)
T ss_pred H
Confidence 3
No 93
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=98.91 E-value=1.6e-09 Score=92.48 Aligned_cols=52 Identities=31% Similarity=0.450 Sum_probs=45.7
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCCCc------chHHHHHHHHHHHHHhchhcccccccc
Q 019721 56 ATLQEIKTSYRKLARKYHPDINKSP------GAEEKFKEISSAYEVLSDDEKRSVYDR 107 (336)
Q Consensus 56 a~~~eIk~ayr~la~~~hPd~~~~~------~~~~~f~~i~~Ay~vL~d~~~r~~YD~ 107 (336)
.+..+|+++||+|+++||||+.... .+.+.|..||+||++|+||.+|+.|+.
T Consensus 3 iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra~ylL 60 (157)
T TIGR00714 3 LDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRAEYML 60 (157)
T ss_pred CCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhHHHHH
Confidence 3678999999999999999985432 266889999999999999999999996
No 94
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=98.88 E-value=2.3e-09 Score=92.71 Aligned_cols=64 Identities=19% Similarity=0.249 Sum_probs=56.4
Q ss_pred cCcceecccCCC--CCHHHHHHHHHHHHHHhCCCCCCCcc------hHHHHHHHHHHHHHhchhcccccccc
Q 019721 44 TDYYSTLNVRQN--ATLQEIKTSYRKLARKYHPDINKSPG------AEEKFKEISSAYEVLSDDEKRSVYDR 107 (336)
Q Consensus 44 ~d~Y~iLgv~~~--a~~~eIk~ayr~la~~~hPd~~~~~~------~~~~f~~i~~Ay~vL~d~~~r~~YD~ 107 (336)
.|||++|||++. .+..++++.||+|.+++|||+..... +.+.-..||+||.+|.||-+|+.|=-
T Consensus 2 ~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA~YLL 73 (173)
T PRK01773 2 NNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAEAII 73 (173)
T ss_pred CChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHHHHHH
Confidence 599999999997 89999999999999999999975322 45567899999999999999998864
No 95
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=98.76 E-value=9.5e-09 Score=97.19 Aligned_cols=84 Identities=23% Similarity=0.421 Sum_probs=69.6
Q ss_pred CCCcceEEEEeecceeeeeceEEEEEeeeeeeCCCCCCCCccCCCCcccCCCCCCccEEEEeeecCCcceeeeecCCCCC
Q 019721 162 NFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCG 241 (336)
Q Consensus 162 ~~g~di~~~l~vslee~~~G~~~~v~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~ 241 (336)
+.+.|+.+++.|||.+|+.|+++.|...
T Consensus 206 r~g~DL~~~~~Isl~~al~G~~~~i~~~---------------------------------------------------- 233 (306)
T PRK10266 206 IVGQDLEIVVPLAPWEAALGAKVTVPTL---------------------------------------------------- 233 (306)
T ss_pred EeCCceEEEEecCHHHHhCCCEEEeeCC----------------------------------------------------
Confidence 4578999999999999999998876432
Q ss_pred CcceEEeeeeeecCCceEEeeeeEEEEEeCCCCCCCcEEEEccCCCCCCCCCCCccEEEEEEEecCCCccccccceeee
Q 019721 242 GDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSK 320 (336)
Q Consensus 242 G~G~~~~~~C~~C~g~g~~~~~~~l~V~Ip~G~~~G~~i~l~G~G~~~~~~g~~GDL~v~i~v~~~~~f~r~g~dL~~~ 320 (336)
...++|+||+|+.+|++++|+|+|++.. +..|||||+|+|..|+.++.+...|+..
T Consensus 234 ---------------------~g~v~v~ip~g~~~g~~~ri~g~G~p~~--~~~GdL~v~~~v~~P~~l~~~q~~l~~~ 289 (306)
T PRK10266 234 ---------------------KESILLTIPPGSQAGQRLRVKGKGLVSK--KQTGDLYAVLKIVMPPKPDEKTAALWQQ 289 (306)
T ss_pred ---------------------CccEEEEeCCCcCCCCEEEECCCCCCCC--CCCCCEEEEEEEECCCCCCHHHHHHHHH
Confidence 1236899999999999999999999854 3579999999999999988777665544
No 96
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.75 E-value=2.1e-08 Score=94.34 Aligned_cols=105 Identities=28% Similarity=0.556 Sum_probs=77.1
Q ss_pred eCCCCCCCCccCC----------CCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCcceEEe--------------
Q 019721 193 TCDSCGGTGAKSS----------NCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIII-------------- 248 (336)
Q Consensus 193 ~C~~C~G~G~~~~----------~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~~~-------------- 248 (336)
.|+.|.|+|.+.. .....|..|+|+|..+... ..|+.|.|.+.+..
T Consensus 145 ~C~~C~GsGv~~~~~~~gPg~~qs~q~~C~~C~G~G~~~~~k----------d~C~~C~G~~~v~~kkil~v~V~~g~~~ 214 (337)
T KOG0712|consen 145 KCTTCRGSGVQTRTRQMGPGMVQSPQLVCDSCNGSGETISLK----------DRCKTCSGAKVVREKKILEVHVEPGMPH 214 (337)
T ss_pred CCCCCCCCCceeEEEeccccccccceeEeccCCCcccccccc----------ccCcccccchhhhhhheeeccccCCCcc
Confidence 6888888887622 3456888888888764322 67888888876542
Q ss_pred ---------------------------------ee--------------eeecCCceEE--eeeeEEEEEeCCC--CCCC
Q 019721 249 ---------------------------------DH--------------CRRCGGNGEV--QSKRSMKVVIPPG--VSNG 277 (336)
Q Consensus 249 ---------------------------------~~--------------C~~C~g~g~~--~~~~~l~V~Ip~G--~~~G 277 (336)
.+ =..|.+.... .+.+.+++.++|| +++|
T Consensus 215 ~~ki~f~geadea~g~~pgD~vl~i~~k~h~~F~Rrg~dL~~~~~i~l~eal~G~~~~~~~ldGr~l~~~~~pg~vi~~~ 294 (337)
T KOG0712|consen 215 GQKITFKGEADEAPGTKPGDVVLLIDQKEHPGFDRRGSDLYRKLTISLVEALCGFQRVWETLDGRLLKLSSKPGEVISPG 294 (337)
T ss_pred cceeeeeeeeeecCCCcCccEEEEecccccccceecccccceeeecchhhccccceEEEEccCCceEEEecCCCceeChh
Confidence 00 1234433322 3457789999999 9999
Q ss_pred cEEEEccCCCCCCCCCCCccEEEEEEEecCC
Q 019721 278 ATMQIRGEGNFDRRRSLAGDLFVALHVDEKQ 308 (336)
Q Consensus 278 ~~i~l~G~G~~~~~~g~~GDL~v~i~v~~~~ 308 (336)
++++++|+||+..... .|||||.++|+.|+
T Consensus 295 ~~~~v~~~gmp~~~~~-~g~lyi~~~v~fp~ 324 (337)
T KOG0712|consen 295 DTKRVEGEGMPIFRNP-KGDLYIKFEVKFPK 324 (337)
T ss_pred HEEeecCCCcccccCC-CCcEEEEEEEEcCC
Confidence 9999999999976555 99999999999998
No 97
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=8.7e-09 Score=92.67 Aligned_cols=67 Identities=36% Similarity=0.478 Sum_probs=59.8
Q ss_pred cCcceecccCC---CCCHHHHHHHHHHHHHHhCCCCCC---CcchHHHHHHHHHHHHHhchhcccccccccCC
Q 019721 44 TDYYSTLNVRQ---NATLQEIKTSYRKLARKYHPDINK---SPGAEEKFKEISSAYEVLSDDEKRSVYDRFGE 110 (336)
Q Consensus 44 ~d~Y~iLgv~~---~a~~~eIk~ayr~la~~~hPd~~~---~~~~~~~f~~i~~Ay~vL~d~~~r~~YD~~G~ 110 (336)
.|+|.+|||+. .|++..|.+|+++...+||||+.. +.+..+.|+.|+.||+||+|+.+|.+||..-.
T Consensus 43 ~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~evL~D~~~R~qyDS~df 115 (379)
T COG5269 43 VDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDRKLRLQYDSNDF 115 (379)
T ss_pred hhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHHhccHHHHhhcccccc
Confidence 58999999998 489999999999999999999973 34578899999999999999999999998543
No 98
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.69 E-value=1.2e-08 Score=88.01 Aligned_cols=61 Identities=31% Similarity=0.516 Sum_probs=55.9
Q ss_pred cccCcceecccCCCCCHHHHHHHHHHHHHHhCCCCCCC--cchHHHHHHHHHHHHHhchhccc
Q 019721 42 AGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKS--PGAEEKFKEISSAYEVLSDDEKR 102 (336)
Q Consensus 42 ~~~d~Y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~~--~~~~~~f~~i~~Ay~vL~d~~~r 102 (336)
.+.|+|++|.|.+..+.++||+.||+|++..|||+|++ +.|...|.-+..||..|-|+.-|
T Consensus 51 fnLNpfeVLqIdpev~~edikkryRklSilVHPDKN~Dd~~rAqkAFdivkKA~k~l~n~~~r 113 (250)
T KOG1150|consen 51 FNLNPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKNPDDAERAQKAFDIVKKAYKLLENDKIR 113 (250)
T ss_pred cccChHHHHhcCCCCCHHHHHHHHHhhheeecCCCCcccHHHHHHHHHHHHHHHHHHhCHHHH
Confidence 36799999999999999999999999999999999985 46889999999999999998744
No 99
>PLN03165 chaperone protein dnaJ-related; Provisional
Probab=98.68 E-value=4.6e-08 Score=77.92 Aligned_cols=60 Identities=37% Similarity=0.783 Sum_probs=48.8
Q ss_pred eeeCCCCCCCCccCCCCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCcceEEeeeeeecCCceEEee
Q 019721 191 FETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQS 262 (336)
Q Consensus 191 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~~~~ 262 (336)
.+.|..|+|+|.. +|+.|+|+|.+.... .+.+++..+|+.|+|.|+. .|+.|.|.+.+..
T Consensus 41 ~v~C~~C~GsG~~------~C~~C~G~G~v~~~~---~g~~q~~~~C~~C~G~Gk~---~C~~C~G~G~~~~ 100 (111)
T PLN03165 41 TQPCFPCSGTGAQ------VCRFCVGSGNVTVEL---GGGEKEVSKCINCDGAGSL---TCTTCQGSGIQPR 100 (111)
T ss_pred CCCCCCCCCCCCc------CCCCCcCcCeEEEEe---CCcEEEEEECCCCCCccee---eCCCCCCCEEEee
Confidence 5789999999983 899999999887543 2345556899999999975 4999999987654
No 100
>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.52 E-value=8.3e-08 Score=84.57 Aligned_cols=56 Identities=25% Similarity=0.560 Sum_probs=52.0
Q ss_pred cCcceecccCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHH-Hhchh
Q 019721 44 TDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYE-VLSDD 99 (336)
Q Consensus 44 ~d~Y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~~~~~~~~f~~i~~Ay~-vL~d~ 99 (336)
..||.+|||...|+.+|++.||..||+++|||...+....++|.+|.+||. ||+..
T Consensus 47 ~e~fril~v~e~~~adevr~af~~lakq~hpdsgs~~adaa~f~qideafrkvlq~~ 103 (342)
T KOG0568|consen 47 MECFRILGVEEGADADEVREAFHDLAKQVHPDSGSEEADAARFIQIDEAFRKVLQEK 103 (342)
T ss_pred HHHHHHhcccccCchhHHHHHHHHHHHHcCCCCCCccccHHHHHHHHHHHHHHHHHH
Confidence 489999999999999999999999999999999988888999999999999 78743
No 101
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=98.29 E-value=1.1e-06 Score=89.81 Aligned_cols=71 Identities=49% Similarity=0.871 Sum_probs=67.2
Q ss_pred cCcceecccCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhchhcccccccccCCCCcC
Q 019721 44 TDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGIT 114 (336)
Q Consensus 44 ~d~Y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~~~~~~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~g~~ 114 (336)
.|||+||||+++|+.++||+|||+||++||||+++++.+.++|++|++||++|+||.+|+.||.||..+..
T Consensus 2 ~DYYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~~eAeekFqeINEAYEVLSDP~KRa~YD~fG~aG~d 72 (871)
T TIGR03835 2 RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKAPDAASIFAEINEANDVLSNPKKRANYDKYGHDGVD 72 (871)
T ss_pred CChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCCHHHHHHHhhhcccccc
Confidence 69999999999999999999999999999999998878889999999999999999999999999987653
No 102
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.24 E-value=1e-06 Score=91.82 Aligned_cols=57 Identities=37% Similarity=0.536 Sum_probs=48.0
Q ss_pred cccccCcceecccCCC----CCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhch
Q 019721 40 RAAGTDYYSTLNVRQN----ATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSD 98 (336)
Q Consensus 40 ~~~~~d~Y~iLgv~~~----a~~~eIk~ayr~la~~~hPd~~~~~~~~~~f~~i~~Ay~vL~d 98 (336)
++...+-|+||.|+-+ -..+.||++|+|||.+|||||| |+-.++|..+++|||.|+.
T Consensus 1277 ~mS~d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKN--PEGRemFe~VnKAYE~L~~ 1337 (2235)
T KOG1789|consen 1277 TMSVDLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKN--PEGREMFERVNKAYELLSS 1337 (2235)
T ss_pred ccchHHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCC--chHHHHHHHHHHHHHHHHH
Confidence 3455678999998864 2447899999999999999998 5667999999999999983
No 103
>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.23 E-value=1.6e-06 Score=67.47 Aligned_cols=53 Identities=25% Similarity=0.312 Sum_probs=45.6
Q ss_pred cCcceecccCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhchh
Q 019721 44 TDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDD 99 (336)
Q Consensus 44 ~d~Y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~~~~~~~~f~~i~~Ay~vL~d~ 99 (336)
+.--.||||+++++.+.||+|+||+....|||+..+|-... +||||+++|...
T Consensus 56 ~EA~lIL~v~~s~~k~KikeaHrriM~~NHPD~GGSPYlAs---KINEAKdlLe~~ 108 (112)
T KOG0723|consen 56 REAALILGVTPSLDKDKIKEAHRRIMLANHPDRGGSPYLAS---KINEAKDLLEGT 108 (112)
T ss_pred HHHHHHhCCCccccHHHHHHHHHHHHHcCCCcCCCCHHHHH---HHHHHHHHHhcc
Confidence 44556999999999999999999999999999987775444 799999999754
No 104
>TIGR02642 phage_xxxx uncharacterized phage protein. This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.
Probab=98.03 E-value=4.9e-06 Score=72.43 Aligned_cols=48 Identities=27% Similarity=0.629 Sum_probs=38.2
Q ss_pred ecCCCCCCcceEEe--eeeeecCCceEEeeeeEEEEEeCCCCCCCcEEEEc
Q 019721 235 STCSKCGGDGKIII--DHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIR 283 (336)
Q Consensus 235 ~~C~~C~G~G~~~~--~~C~~C~g~g~~~~~~~l~V~Ip~G~~~G~~i~l~ 283 (336)
.+|+.|+|+|+++. ++|+.|+|.|.+..+.++.+.+ .|+.+|++|++.
T Consensus 100 ~~C~~C~G~G~~i~~~~~C~~C~G~G~v~~~~~~~~k~-~g~~~g~~it~~ 149 (186)
T TIGR02642 100 CKCPRCRGTGLIQRRQRECDTCAGTGRFRPTVEDLLKS-FGVDSGAAIVLK 149 (186)
T ss_pred CcCCCCCCeeEEecCCCCCCCCCCccEEeeeEEEEEEe-eeccCCceeeHH
Confidence 45666666666665 5688888888888889999999 999999999874
No 105
>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation. DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.
Probab=97.79 E-value=1e-05 Score=58.83 Aligned_cols=43 Identities=33% Similarity=0.872 Sum_probs=31.0
Q ss_pred eeeCCCCCCCCccCC---------CCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCcc
Q 019721 191 FETCDSCGGTGAKSS---------NCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDG 244 (336)
Q Consensus 191 ~~~C~~C~G~G~~~~---------~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G 244 (336)
...|+.|+|+|.... ....+|+.|+|+|+++ .. .+|+.|+|.|
T Consensus 15 ~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~i-~~----------~~C~~C~G~g 66 (66)
T PF00684_consen 15 PKTCPQCNGSGQVTRRQQTPGGVFQMQQTCPKCGGTGKII-EK----------DPCKTCKGSG 66 (66)
T ss_dssp -EE-TTSSSSSEEEEEEESSSTTEEEEEE-TTTSSSSEE--TS----------SB-SSSTTSS
T ss_pred CcCCcCCCCeeEEEEEEeCCCeEEEEEEECCCCcceeeEE-CC----------CCCCCCCCcC
Confidence 358999999999732 2468999999999987 22 7899999986
No 106
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=97.68 E-value=2.9e-05 Score=77.13 Aligned_cols=69 Identities=32% Similarity=0.734 Sum_probs=40.7
Q ss_pred eeCCCCCCCCccCCCCcccCCCCCCccEEEEeeecC--------Ccceee-eecCCCCCCcceEE-eeeeeecCCceEEe
Q 019721 192 ETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTP--------FGLISQ-VSTCSKCGGDGKII-IDHCRRCGGNGEVQ 261 (336)
Q Consensus 192 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~--------~~~~~~-~~~C~~C~G~G~~~-~~~C~~C~g~g~~~ 261 (336)
..|+.|+|+|.... ....|+.|+|+|+.-...... .-++.. ..+|+.|+|+|++. ...|+.|+|.|.+.
T Consensus 3 ~~C~~C~g~G~i~v-~~e~c~vc~gtG~~~~~d~k~~~~~~~~~~D~~~~~~~pc~~c~gkG~V~v~~~c~~c~G~gkv~ 81 (715)
T COG1107 3 KKCPECGGKGKIVV-GEEECPVCHGTGFSDDFDPKGVANLSRETVDLFASFEIPCPKCRGKGTVTVYDTCPECGGTGKVL 81 (715)
T ss_pred ccccccCCCceEee-eeeecccccccccccccChhhhhhhhhccccccccCCCCCCeeccceeEEEEeecccCCCceeEE
Confidence 46888888776542 345688888888762211100 111111 24788888887764 56777777776554
No 107
>PLN03165 chaperone protein dnaJ-related; Provisional
Probab=96.79 E-value=0.00091 Score=53.45 Aligned_cols=41 Identities=32% Similarity=0.748 Sum_probs=32.2
Q ss_pred eCCCCCCCCccCC------CCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCcceEEe
Q 019721 193 TCDSCGGTGAKSS------NCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIII 248 (336)
Q Consensus 193 ~C~~C~G~G~~~~------~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~~~ 248 (336)
.|+.|+|+|.... ....+|+.|+|+|+. .|..|+|+|.+.+
T Consensus 54 ~C~~C~G~G~v~~~~~g~~q~~~~C~~C~G~Gk~---------------~C~~C~G~G~~~~ 100 (111)
T PLN03165 54 VCRFCVGSGNVTVELGGGEKEVSKCINCDGAGSL---------------TCTTCQGSGIQPR 100 (111)
T ss_pred CCCCCcCcCeEEEEeCCcEEEEEECCCCCCccee---------------eCCCCCCCEEEee
Confidence 7999999988532 235799999999952 4999999998754
No 108
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=96.70 E-value=0.0018 Score=64.69 Aligned_cols=47 Identities=38% Similarity=0.819 Sum_probs=35.3
Q ss_pred eeeCCCCCCCCccCCC------------------CcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCcceEEe
Q 019721 191 FETCDSCGGTGAKSSN------------------CIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIII 248 (336)
Q Consensus 191 ~~~C~~C~G~G~~~~~------------------~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~~~ 248 (336)
...|+-|+|+|..... ...+|+.|+|+|.+... .+|+.|.|+|++..
T Consensus 18 ~e~c~vc~gtG~~~~~d~k~~~~~~~~~~D~~~~~~~pc~~c~gkG~V~v~-----------~~c~~c~G~gkv~~ 82 (715)
T COG1107 18 EEECPVCHGTGFSDDFDPKGVANLSRETVDLFASFEIPCPKCRGKGTVTVY-----------DTCPECGGTGKVLT 82 (715)
T ss_pred eeecccccccccccccChhhhhhhhhccccccccCCCCCCeeccceeEEEE-----------eecccCCCceeEEe
Confidence 4679999999876321 13589999999987542 68999999998764
No 109
>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=96.52 E-value=0.002 Score=54.00 Aligned_cols=68 Identities=22% Similarity=0.400 Sum_probs=53.6
Q ss_pred cccccCcceecccCC--CCCHHHHHHHHHHHHHHhCCCCCCC------cchHHHHHHHHHHHHHhchhcccccccc
Q 019721 40 RAAGTDYYSTLNVRQ--NATLQEIKTSYRKLARKYHPDINKS------PGAEEKFKEISSAYEVLSDDEKRSVYDR 107 (336)
Q Consensus 40 ~~~~~d~Y~iLgv~~--~a~~~eIk~ayr~la~~~hPd~~~~------~~~~~~f~~i~~Ay~vL~d~~~r~~YD~ 107 (336)
+....+||.++|... ...+..++.-|.-..++.|||+... ..|.+...++++||..|.||-+|+.|=.
T Consensus 4 ~~~~~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA~Yil 79 (168)
T KOG3192|consen 4 MGSPSRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARARYLL 79 (168)
T ss_pred cchHHHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 344578999996444 4566667768889999999998432 2477889999999999999999999864
No 110
>TIGR02642 phage_xxxx uncharacterized phage protein. This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.
Probab=96.40 E-value=0.0028 Score=55.39 Aligned_cols=29 Identities=31% Similarity=0.822 Sum_probs=14.6
Q ss_pred ccCCCCCCccEEEEeeecCCcceeeeecCCCCCCcceEE
Q 019721 209 QSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKII 247 (336)
Q Consensus 209 ~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~~ 247 (336)
.+|+.|+|+|+++... .+|+.|+|+|++.
T Consensus 100 ~~C~~C~G~G~~i~~~----------~~C~~C~G~G~v~ 128 (186)
T TIGR02642 100 CKCPRCRGTGLIQRRQ----------RECDTCAGTGRFR 128 (186)
T ss_pred CcCCCCCCeeEEecCC----------CCCCCCCCccEEe
Confidence 3455555555544321 3466666655554
No 111
>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.22 E-value=0.0055 Score=57.01 Aligned_cols=62 Identities=32% Similarity=0.754 Sum_probs=39.9
Q ss_pred eeeCCCCCCCCccCC-------------------CCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCcceEEeeee
Q 019721 191 FETCDSCGGTGAKSS-------------------NCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHC 251 (336)
Q Consensus 191 ~~~C~~C~G~G~~~~-------------------~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~~~~~C 251 (336)
..+|+.|+|.|...- .....|..|+|+|. .+|+.|+|+|. .+|
T Consensus 198 ~~vc~gc~g~G~~~y~~~~~m~c~sc~G~~~~k~gt~~~C~~C~G~G~---------------~~C~tC~grG~---k~C 259 (406)
T KOG2813|consen 198 AMVCHGCSGSGSNSYGIGTPMHCMSCTGVPPPKIGTHDLCYMCHGRGI---------------KECHTCKGRGK---KPC 259 (406)
T ss_pred ceeccCcCCCCccccccCcceecccccCCCCCCCCccchhhhccCCCc---------------ccCCcccCCCC---ccc
Confidence 357888888874211 11345666666664 35777777775 468
Q ss_pred eecCCceEEeeeeEEEEEe
Q 019721 252 RRCGGNGEVQSKRSMKVVI 270 (336)
Q Consensus 252 ~~C~g~g~~~~~~~l~V~I 270 (336)
..|.|+|.+.....+.|..
T Consensus 260 ~TC~gtgsll~~t~~vV~w 278 (406)
T KOG2813|consen 260 TTCSGTGSLLNYTRIVVYW 278 (406)
T ss_pred ccccCccceeeeEEEEEEe
Confidence 9999998877766665554
No 112
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.21 E-value=0.0023 Score=55.61 Aligned_cols=53 Identities=38% Similarity=0.508 Sum_probs=46.1
Q ss_pred ccCcceecccCCCCCHHHHHHHHHHHHHHhCCCCCCC--------cchHHHHHHHHHHHHH
Q 019721 43 GTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKS--------PGAEEKFKEISSAYEV 95 (336)
Q Consensus 43 ~~d~Y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~~--------~~~~~~f~~i~~Ay~v 95 (336)
+.+.|++|++...+...+|+++||++....|||+-.. ..+.+++++|++||+.
T Consensus 112 ~~~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~ 172 (174)
T COG1076 112 REDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYED 172 (174)
T ss_pred chhHHHHhcCchhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHh
Confidence 3789999999999999999999999999999997432 2478889999999974
No 113
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=94.38 E-value=0.022 Score=49.40 Aligned_cols=63 Identities=30% Similarity=0.455 Sum_probs=47.8
Q ss_pred CcceecccCCCC--CHHHHHHHHHHHHHHhCCCCCCCcc------hHHHHHHHHHHHHHhchhcccccccc
Q 019721 45 DYYSTLNVRQNA--TLQEIKTSYRKLARKYHPDINKSPG------AEEKFKEISSAYEVLSDDEKRSVYDR 107 (336)
Q Consensus 45 d~Y~iLgv~~~a--~~~eIk~ayr~la~~~hPd~~~~~~------~~~~f~~i~~Ay~vL~d~~~r~~YD~ 107 (336)
||+...+..+.+ ..+.++..|+.+++.+|||+..... +.+.+..++.||.+|.||-+|+.|=.
T Consensus 2 ~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra~~~l 72 (174)
T COG1076 2 DGFVLFGLPRAFQIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAEYLL 72 (174)
T ss_pred CcccccccHHHHHHHHhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 344455555544 3345888999999999999975322 44678999999999999999998865
No 114
>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.37 E-value=0.023 Score=53.01 Aligned_cols=74 Identities=31% Similarity=0.600 Sum_probs=42.5
Q ss_pred eeeceEEEEEeee---eeeCCCCCCCCccCCCCcccCCCCCCccEEEEeeecC------Cc----ceeeeecCCCCCCcc
Q 019721 178 SIFGGQRGIEVSC---FETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTP------FG----LISQVSTCSKCGGDG 244 (336)
Q Consensus 178 ~~~G~~~~v~~~~---~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~------~~----~~~~~~~C~~C~G~G 244 (336)
++.|....+.++. ...|..|.|.|. ..|+.|+|.|.-.-...++ .| ..-+...|..|+|+|
T Consensus 171 mf~~~~~~~~vphs~~v~~ch~c~gRG~------~vc~gc~g~G~~~y~~~~~m~c~sc~G~~~~k~gt~~~C~~C~G~G 244 (406)
T KOG2813|consen 171 MFSGVAHPAVVPHSMIVTFCHACLGRGA------MVCHGCSGSGSNSYGIGTPMHCMSCTGVPPPKIGTHDLCYMCHGRG 244 (406)
T ss_pred cccccccceeccchHhhhhhhcccCCCc------eeccCcCCCCccccccCcceecccccCCCCCCCCccchhhhccCCC
Confidence 4445444444433 357899999984 5799999999421111000 01 112235677777777
Q ss_pred eEEeeeeeecCCceEE
Q 019721 245 KIIIDHCRRCGGNGEV 260 (336)
Q Consensus 245 ~~~~~~C~~C~g~g~~ 260 (336)
+ ..|..|.|.|..
T Consensus 245 ~---~~C~tC~grG~k 257 (406)
T KOG2813|consen 245 I---KECHTCKGRGKK 257 (406)
T ss_pred c---ccCCcccCCCCc
Confidence 4 367777776643
No 115
>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]
Probab=93.54 E-value=0.09 Score=52.41 Aligned_cols=49 Identities=29% Similarity=0.472 Sum_probs=35.3
Q ss_pred ceecccCCCCCHHHHHHHHHHHHHHhCCCCCCCcc--------hHHHHHHHHHHHHH
Q 019721 47 YSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPG--------AEEKFKEISSAYEV 95 (336)
Q Consensus 47 Y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~~~~--------~~~~f~~i~~Ay~v 95 (336)
++-+.+..=.+.++|||||||..+..||||-+..+ +++.|..+++||..
T Consensus 391 WqpVsltDLVtp~~VKKaYrKA~L~VHPDKlqq~gas~~qK~Iaekvfd~l~eawn~ 447 (453)
T KOG0431|consen 391 WQPVSLTDLVTPAQVKKAYRKAVLCVHPDKLQQKGASLEQKYIAEKVFDALSEAWNK 447 (453)
T ss_pred cccCchhhccCHHHHHHHHHhhhheeCcccccCCcccHHHHHHHHHHHHHHHHHHHh
Confidence 33445566678999999999999999999976432 44556666666653
No 116
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=92.39 E-value=0.25 Score=40.50 Aligned_cols=55 Identities=22% Similarity=0.231 Sum_probs=39.0
Q ss_pred ccCcceecccCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhchhc
Q 019721 43 GTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDE 100 (336)
Q Consensus 43 ~~d~Y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~~~~~~~~f~~i~~Ay~vL~d~~ 100 (336)
-..=..||+|++..+.++|.+.|.+|-...+|++..+ ...=.+|..|.|.|..+-
T Consensus 57 l~EA~~ILnv~~~~~~eeI~k~y~~Lf~~Nd~~kGGS---fYLQSKV~rAKErl~~El 111 (127)
T PF03656_consen 57 LDEARQILNVKEELSREEIQKRYKHLFKANDPSKGGS---FYLQSKVFRAKERLEQEL 111 (127)
T ss_dssp HHHHHHHHT--G--SHHHHHHHHHHHHHHT-CCCTS----HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCccCHHHHHHHHHHHHhccCCCcCCC---HHHHHHHHHHHHHHHHHH
Confidence 3466799999999999999999999999999997643 344446788888887544
No 117
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=87.01 E-value=1.4 Score=38.86 Aligned_cols=38 Identities=26% Similarity=0.518 Sum_probs=30.7
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhc
Q 019721 53 RQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLS 97 (336)
Q Consensus 53 ~~~a~~~eIk~ayr~la~~~hPd~~~~~~~~~~f~~i~~Ay~vL~ 97 (336)
+++||.|||.+|+.++..+|--| ++.-.+|..||+.+.
T Consensus 1 S~~ASfeEIq~Arn~ll~~y~gd-------~~~~~~IEaAYD~IL 38 (194)
T PF11833_consen 1 SEDASFEEIQAARNRLLAQYAGD-------EKSREAIEAAYDAIL 38 (194)
T ss_pred CCCCCHHHHHHHHHHHHHHhcCC-------HHHHHHHHHHHHHHH
Confidence 57999999999999999998433 345568999999754
No 118
>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]
Probab=84.34 E-value=0.97 Score=43.22 Aligned_cols=53 Identities=40% Similarity=0.607 Sum_probs=43.1
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCC-----CcchHHHHHHHHHHHHHhchhccccccccc
Q 019721 56 ATLQEIKTSYRKLARKYHPDINK-----SPGAEEKFKEISSAYEVLSDDEKRSVYDRF 108 (336)
Q Consensus 56 a~~~eIk~ayr~la~~~hPd~~~-----~~~~~~~f~~i~~Ay~vL~d~~~r~~YD~~ 108 (336)
++..+|+.+|+..++..||++.. .-...+.|++|.+||++|.+..+|..+|..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~ka~~i~~~~~~~~t~~~~ 61 (335)
T KOG0724|consen 4 ASEDELRLAYREMALKSHPEKKSFYEKLSLWTEEEFKKIEKALAILDDDEPRRTPDSW 61 (335)
T ss_pred ccHHHHHHHHHHHhhhcCcHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccccchhhh
Confidence 57789999999999999999863 225677899999999999986666566653
No 119
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=83.97 E-value=1.1 Score=42.01 Aligned_cols=48 Identities=35% Similarity=0.809 Sum_probs=35.5
Q ss_pred eeeeeeCCCCCCCCccC-----CCCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCcceEE
Q 019721 188 VSCFETCDSCGGTGAKS-----SNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKII 247 (336)
Q Consensus 188 ~~~~~~C~~C~G~G~~~-----~~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~~ 247 (336)
......|..|.|.|... .....+|..|.|.|.+.. ..|..|.|.|.+.
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~c~~~~~~~~------------~~c~~~~g~~~v~ 230 (288)
T KOG0715|consen 178 GAKRESCKTCSGRGLVSNPKEDPFILYTCSYCLGRGLVLR------------DNCQACSGAGQVR 230 (288)
T ss_pred ccccccchhhhCcccccccccCCcceeecccccccceecc------------chHHHhhcchhhh
Confidence 34468999999999331 112237999999998865 4599999999554
No 120
>PF13446 RPT: A repeated domain in UCH-protein
Probab=83.75 E-value=2.2 Score=30.14 Aligned_cols=26 Identities=12% Similarity=0.285 Sum_probs=23.3
Q ss_pred CcceecccCCCCCHHHHHHHHHHHHH
Q 019721 45 DYYSTLNVRQNATLQEIKTSYRKLAR 70 (336)
Q Consensus 45 d~Y~iLgv~~~a~~~eIk~ayr~la~ 70 (336)
+=|+.|||+++.+++.|-.+|+....
T Consensus 6 ~Ay~~Lgi~~~~~Dd~Ii~~f~~~~~ 31 (62)
T PF13446_consen 6 EAYEILGIDEDTDDDFIISAFQSKVN 31 (62)
T ss_pred HHHHHhCcCCCCCHHHHHHHHHHHHH
Confidence 45899999999999999999998766
No 121
>smart00709 Zpr1 Duplicated domain in the epidermal growth factor- and elongation factor-1alpha-binding protein Zpr1. Also present in archaeal proteins.
Probab=82.06 E-value=7.7 Score=33.14 Aligned_cols=20 Identities=30% Similarity=0.649 Sum_probs=15.4
Q ss_pred EEEEEeCCCCCCCcEEEEcc
Q 019721 265 SMKVVIPPGVSNGATMQIRG 284 (336)
Q Consensus 265 ~l~V~Ip~G~~~G~~i~l~G 284 (336)
++.++||||...|..-+++|
T Consensus 81 El~~ei~pg~~~g~itTVEG 100 (160)
T smart00709 81 ELDLEIPPGPLGGFITTVEG 100 (160)
T ss_pred eeeEEecCCCCCcEEEehHH
Confidence 45788888888887777765
No 122
>TIGR00310 ZPR1_znf ZPR1 zinc finger domain.
Probab=81.67 E-value=7.8 Score=34.16 Aligned_cols=75 Identities=24% Similarity=0.442 Sum_probs=41.1
Q ss_pred cCCCCCCccEEE-Eeee-cC-Cccee-eeecCCCCCCcceEEee------e-----eee--cCCceEEe------eeeEE
Q 019721 210 SCKACWGRGGVL-KTQR-TP-FGLIS-QVSTCSKCGGDGKIIID------H-----CRR--CGGNGEVQ------SKRSM 266 (336)
Q Consensus 210 ~C~~C~G~G~~~-~~~~-~~-~~~~~-~~~~C~~C~G~G~~~~~------~-----C~~--C~g~g~~~------~~~~l 266 (336)
.|+.|++.|... .... +| |+-+. ....|+.|+-+-..+.. . ... =-.+.++. .--+|
T Consensus 2 ~Cp~C~~~~~~~~~~~~~IP~F~evii~sf~C~~CGyr~~ev~~~g~~~p~r~~l~V~~~~DL~r~VvkS~tati~IPEl 81 (192)
T TIGR00310 2 DCPSCGGECETVMKTVNDIPYFGEVLETSTICEHCGYRSNDVKTLGAKEPKRYILKIDDEADLNRRVVKSESATIRIPEL 81 (192)
T ss_pred cCCCCCCCCEEEEEEEcCCCCcceEEEEEEECCCCCCccceeEECCCCCCEEEEEEECChhcccceEEEcCCcEEEccce
Confidence 478887777643 2333 44 44333 34789999877544320 0 000 00011111 11245
Q ss_pred EEEeCCC-CCCCcEEEEcc
Q 019721 267 KVVIPPG-VSNGATMQIRG 284 (336)
Q Consensus 267 ~V~Ip~G-~~~G~~i~l~G 284 (336)
.++|||| +..|..-++.|
T Consensus 82 ~lei~pg~~~~G~iTTVEG 100 (192)
T TIGR00310 82 GLDIEPGPTSGGFITNLEG 100 (192)
T ss_pred EEEECCCccCCceEEeeHh
Confidence 8899999 68888888866
No 123
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=77.85 E-value=2.3 Score=39.26 Aligned_cols=45 Identities=31% Similarity=0.733 Sum_probs=25.3
Q ss_pred eeCCCCCCCCccCCCCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCcceE
Q 019721 192 ETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKI 246 (336)
Q Consensus 192 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~ 246 (336)
..|..|.|.+. .+|..|+|+=+++... ...+ ...+|..|+=.|-+
T Consensus 230 ~~C~~CGg~rF------lpC~~C~GS~kv~~~~-~~~~---~~~rC~~CNENGLv 274 (281)
T KOG2824|consen 230 GVCESCGGARF------LPCSNCHGSCKVHEEE-EDDG---GVLRCLECNENGLV 274 (281)
T ss_pred CcCCCcCCcce------EecCCCCCceeeeeec-cCCC---cEEECcccCCCCce
Confidence 46777766554 3577777777665421 1111 12567777766655
No 124
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=76.62 E-value=1.7 Score=47.96 Aligned_cols=68 Identities=26% Similarity=0.480 Sum_probs=42.5
Q ss_pred eceEEEEEeeeeeeCCCCCCCCccCCCCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCcceE---EeeeeeecCC
Q 019721 180 FGGQRGIEVSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKI---IIDHCRRCGG 256 (336)
Q Consensus 180 ~G~~~~v~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~---~~~~C~~C~g 256 (336)
.+....+.+. ...|+.|..... ...|+.|+..-.. ...|+.|+..=.. ....|+.|+.
T Consensus 657 ~~G~ieVEV~-~rkCPkCG~~t~-----~~fCP~CGs~te~-------------vy~CPsCGaev~~des~a~~CP~CGt 717 (1337)
T PRK14714 657 EGGVIEVEVG-RRRCPSCGTETY-----ENRCPDCGTHTEP-------------VYVCPDCGAEVPPDESGRVECPRCDV 717 (1337)
T ss_pred cCCeEEEEEE-EEECCCCCCccc-----cccCcccCCcCCC-------------ceeCccCCCccCCCccccccCCCCCC
Confidence 4555556654 679999976432 2489999877421 1479999874110 1348999987
Q ss_pred ceEEeeeeEE
Q 019721 257 NGEVQSKRSM 266 (336)
Q Consensus 257 ~g~~~~~~~l 266 (336)
.......+.+
T Consensus 718 plv~~~~~~i 727 (1337)
T PRK14714 718 ELTPYQRRTI 727 (1337)
T ss_pred cccccceEEe
Confidence 6554444433
No 125
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=75.90 E-value=2.7 Score=35.39 Aligned_cols=26 Identities=31% Similarity=0.800 Sum_probs=18.2
Q ss_pred eeCCCCCCCCccCCCCcccCCCCCCccEEEEe
Q 019721 192 ETCDSCGGTGAKSSNCIQSCKACWGRGGVLKT 223 (336)
Q Consensus 192 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~ 223 (336)
..|..|.|.+. .+|..|+|+=+++..
T Consensus 100 ~~C~~Cgg~rf------v~C~~C~Gs~k~~~~ 125 (147)
T cd03031 100 GVCEGCGGARF------VPCSECNGSCKVFAE 125 (147)
T ss_pred CCCCCCCCcCe------EECCCCCCcceEEec
Confidence 45888877654 468888888777653
No 126
>COG5552 Uncharacterized conserved protein [Function unknown]
Probab=75.14 E-value=10 Score=27.85 Aligned_cols=46 Identities=20% Similarity=0.231 Sum_probs=32.5
Q ss_pred ccCcceecccCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHH
Q 019721 43 GTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKE 88 (336)
Q Consensus 43 ~~d~Y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~~~~~~~~f~~ 88 (336)
++|--++.++++.|+..||+.|-++..+|..=-..++....+.|..
T Consensus 2 CRNIk~LfnfdPPAT~~EvrdAAlQfVRKlSGtT~PS~~n~~AFe~ 47 (88)
T COG5552 2 CRNIKELFNFDPPATPVEVRDAALQFVRKLSGTTHPSAANAEAFEA 47 (88)
T ss_pred ccchHHHhCCCCCCCcHHHHHHHHHHHHHhcCCCCcchhhHHHHHH
Confidence 4555677899999999999999888887775444444444455543
No 127
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=74.82 E-value=3.4 Score=38.19 Aligned_cols=37 Identities=35% Similarity=0.725 Sum_probs=30.6
Q ss_pred ccCCCCCCccEEEEeeecCCcceeeeecCCCCCCcceEEe--------eeeeecCCceEE
Q 019721 209 QSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIII--------DHCRRCGGNGEV 260 (336)
Q Consensus 209 ~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~~~--------~~C~~C~g~g~~ 260 (336)
..|..|.|.+++ +|..|+|..++.. .+|..|+=+|.+
T Consensus 230 ~~C~~CGg~rFl---------------pC~~C~GS~kv~~~~~~~~~~~rC~~CNENGLv 274 (281)
T KOG2824|consen 230 GVCESCGGARFL---------------PCSNCHGSCKVHEEEEDDGGVLRCLECNENGLV 274 (281)
T ss_pred CcCCCcCCcceE---------------ecCCCCCceeeeeeccCCCcEEECcccCCCCce
Confidence 689999999874 7999999998876 479999877654
No 128
>TIGR00340 zpr1_rel ZPR1-related zinc finger protein. A model ZPR1_znf (TIGR00310) has been created to describe the domain shared by this protein and ZPR1.
Probab=74.66 E-value=11 Score=32.35 Aligned_cols=35 Identities=31% Similarity=0.546 Sum_probs=20.8
Q ss_pred CCCCCCccEEE--EeeecC-Ccceee-eecCCCCCCcce
Q 019721 211 CKACWGRGGVL--KTQRTP-FGLISQ-VSTCSKCGGDGK 245 (336)
Q Consensus 211 C~~C~G~G~~~--~~~~~~-~~~~~~-~~~C~~C~G~G~ 245 (336)
||.|++.+... ....+| |+-+.. ...|+.|+-+-.
T Consensus 1 CP~Cg~~~~~~~~~~~~IP~F~evii~sf~C~~CGyr~~ 39 (163)
T TIGR00340 1 CPVCGSRTLKAVTYDYDIPYFGKIMLSTYICEKCGYRST 39 (163)
T ss_pred CCCCCCcceEeeeEeccCCCcceEEEEEEECCCCCCchh
Confidence 77787775444 233444 443333 478999987644
No 129
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=73.44 E-value=4.2 Score=34.27 Aligned_cols=37 Identities=35% Similarity=0.741 Sum_probs=27.8
Q ss_pred cccCCCCCCccEEEEeeecCCcceeeeecCCCCCCcceEEe---------eeeeecCCceE
Q 019721 208 IQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIII---------DHCRRCGGNGE 259 (336)
Q Consensus 208 ~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~~~---------~~C~~C~g~g~ 259 (336)
...|..|.|.+++ +|..|+|..++.. .+|+.|+=+|.
T Consensus 99 ~~~C~~Cgg~rfv---------------~C~~C~Gs~k~~~~~~~~~~~~~rC~~Cnengl 144 (147)
T cd03031 99 GGVCEGCGGARFV---------------PCSECNGSCKVFAENATAAGGFLRCPECNENGL 144 (147)
T ss_pred CCCCCCCCCcCeE---------------ECCCCCCcceEEeccCcccccEEECCCCCcccc
Confidence 3569999999874 6999999887753 37888876553
No 130
>PRK04023 DNA polymerase II large subunit; Validated
Probab=72.49 E-value=1.9 Score=46.52 Aligned_cols=70 Identities=27% Similarity=0.574 Sum_probs=44.1
Q ss_pred ceeeee-ceEEEEEeeeeeeCCCCCCCCccCCCCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCcceEEeeeeee
Q 019721 175 FEESIF-GGQRGIEVSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRR 253 (336)
Q Consensus 175 lee~~~-G~~~~v~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~~~~~C~~ 253 (336)
+.+|+. +....+.+. ...|+.|.-.+ ....|+.|+..-.. ...|+.|.-... ...|+.
T Consensus 610 i~~A~~~~g~~eVEVg-~RfCpsCG~~t-----~~frCP~CG~~Te~-------------i~fCP~CG~~~~--~y~CPK 668 (1121)
T PRK04023 610 INKAAKYKGTIEVEIG-RRKCPSCGKET-----FYRRCPFCGTHTEP-------------VYRCPRCGIEVE--EDECEK 668 (1121)
T ss_pred HHHHHhcCCceeeccc-CccCCCCCCcC-----CcccCCCCCCCCCc-------------ceeCccccCcCC--CCcCCC
Confidence 556665 555555554 46899997653 45789999887211 157999954332 356999
Q ss_pred cCCceEEeeeeE
Q 019721 254 CGGNGEVQSKRS 265 (336)
Q Consensus 254 C~g~g~~~~~~~ 265 (336)
|+..........
T Consensus 669 CG~El~~~s~~~ 680 (1121)
T PRK04023 669 CGREPTPYSKRK 680 (1121)
T ss_pred CCCCCCccceEE
Confidence 987654443333
No 131
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=71.68 E-value=3.2 Score=45.26 Aligned_cols=33 Identities=24% Similarity=0.578 Sum_probs=17.5
Q ss_pred ccCCCCCCccEEEEeeecCCcceee-eecCCCCCCcce
Q 019721 209 QSCKACWGRGGVLKTQRTPFGLISQ-VSTCSKCGGDGK 245 (336)
Q Consensus 209 ~~C~~C~G~G~~~~~~~~~~~~~~~-~~~C~~C~G~G~ 245 (336)
..|+.|.|.|.+.... .++.. ..+|+.|+|+.+
T Consensus 737 G~C~~C~G~G~~~~~~----~f~~~~~~~C~~C~G~R~ 770 (924)
T TIGR00630 737 GRCEACQGDGVIKIEM----HFLPDVYVPCEVCKGKRY 770 (924)
T ss_pred CCCCCCccceEEEEEc----cCCCCcccCCCCcCCcee
Confidence 4577777777654321 11211 256666666654
No 132
>PF03589 Antiterm: Antitermination protein; InterPro: IPR003222 This entry consists of antitermination proteins found in bacteriophages, such as protein Q from phage lambda, and some bacterial homologues. Protein Q positively regulates expression of the phage late gene operon by binding to the bacterial host RNA polymerase (RNAP) and modifying it. The modified RNAP transcribes through termination sites that otherwise prevent expression of the regulated genes [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent
Probab=69.27 E-value=1.6 Score=34.03 Aligned_cols=38 Identities=29% Similarity=0.719 Sum_probs=20.8
Q ss_pred ccCCCCCCccEEEEeeecCCc-ceeeeecCCCCCCcceE
Q 019721 209 QSCKACWGRGGVLKTQRTPFG-LISQVSTCSKCGGDGKI 246 (336)
Q Consensus 209 ~~C~~C~G~G~~~~~~~~~~~-~~~~~~~C~~C~G~G~~ 246 (336)
..|..|+|.|..+....+-.. .+.....|..|.|.|+.
T Consensus 6 ~~c~~c~g~g~al~~~~s~~~~G~pvfk~c~rcgg~G~s 44 (95)
T PF03589_consen 6 DSCRRCAGDGAALDMKQSKAQFGVPVFKDCERCGGRGYS 44 (95)
T ss_pred CCcCccCCcceeccHHHhHhccCCchhhhhhhhcCCCCC
Confidence 456777777755543322211 12222567778777765
No 133
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=66.84 E-value=5 Score=42.72 Aligned_cols=35 Identities=23% Similarity=0.416 Sum_probs=20.7
Q ss_pred ccCCCCCCccEEEEeeecCCcceeeeecCCCCCCcceE
Q 019721 209 QSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKI 246 (336)
Q Consensus 209 ~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~ 246 (336)
..|..|.|.|.+.......+-. ..+|+.|+|+-+.
T Consensus 731 GRCe~C~GdG~ikIeM~FLpdV---yv~CevC~GkRYn 765 (935)
T COG0178 731 GRCEACQGDGVIKIEMHFLPDV---YVPCEVCHGKRYN 765 (935)
T ss_pred cCCccccCCceEEEEeccCCCc---eeeCCCcCCcccc
Confidence 5788888888765433221111 1678888877543
No 134
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=65.40 E-value=4.9 Score=43.92 Aligned_cols=34 Identities=24% Similarity=0.433 Sum_probs=15.9
Q ss_pred ccCCCCCCccEEEEeeecCCcceeeeecCCCCCCcce
Q 019721 209 QSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGK 245 (336)
Q Consensus 209 ~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~ 245 (336)
..|+.|.|.|.+........ ....+|+.|+|+..
T Consensus 739 G~C~~C~G~G~~~~~~~f~~---~~~~~C~~C~G~R~ 772 (943)
T PRK00349 739 GRCEACQGDGVIKIEMHFLP---DVYVPCDVCKGKRY 772 (943)
T ss_pred CCCCcccccceEEEEeccCC---CccccCccccCccc
Confidence 34666666666543221110 11245666665543
No 135
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=63.36 E-value=15 Score=30.07 Aligned_cols=22 Identities=14% Similarity=0.250 Sum_probs=14.6
Q ss_pred eEEEEEeCCCCCCCcEEEEccC
Q 019721 264 RSMKVVIPPGVSNGATMQIRGE 285 (336)
Q Consensus 264 ~~l~V~Ip~G~~~G~~i~l~G~ 285 (336)
..+++.-+.+.+.||.+.+.-+
T Consensus 42 ~~~~~~~~~~~~~GD~V~v~i~ 63 (135)
T PF04246_consen 42 ITFRAPNPIGAKVGDRVEVEIP 63 (135)
T ss_pred EEEEecCCCCCCCCCEEEEEec
Confidence 4556666777788877776543
No 136
>TIGR03655 anti_R_Lar restriction alleviation protein, Lar family. Restriction alleviation proteins provide a countermeasure to host cell restriction enzyme defense against foreign DNA such as phage or plasmids. This family consists of homologs to the phage antirestriction protein Lar, and most members belong to phage genomes or prophage regions of bacterial genomes.
Probab=62.27 E-value=13 Score=25.40 Aligned_cols=14 Identities=29% Similarity=0.629 Sum_probs=9.8
Q ss_pred ccCCCCCCccEEEE
Q 019721 209 QSCKACWGRGGVLK 222 (336)
Q Consensus 209 ~~C~~C~G~G~~~~ 222 (336)
++||-|+|+...++
T Consensus 2 kPCPfCGg~~~~~~ 15 (53)
T TIGR03655 2 KPCPFCGGADVYLR 15 (53)
T ss_pred CCCCCCCCcceeeE
Confidence 47888888777443
No 137
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=60.25 E-value=6.7 Score=45.63 Aligned_cols=35 Identities=23% Similarity=0.563 Sum_probs=23.4
Q ss_pred cccCCCCCCccEEEEeeecCCcceee-eecCCCCCCcceE
Q 019721 208 IQSCKACWGRGGVLKTQRTPFGLISQ-VSTCSKCGGDGKI 246 (336)
Q Consensus 208 ~~~C~~C~G~G~~~~~~~~~~~~~~~-~~~C~~C~G~G~~ 246 (336)
...|+.|.|.|.+.... .++.. ..+|+.|+|+.+.
T Consensus 1607 ~GrC~~C~G~G~i~i~m----~fl~dv~~~C~~C~G~R~~ 1642 (1809)
T PRK00635 1607 QGQCSDCWGLGYQWIDR----AFYALEKRPCPTCSGFRIQ 1642 (1809)
T ss_pred CCCCCCCccCceEEEec----ccCCCcccCCCCCCCcCCC
Confidence 34699999999865432 22222 3689999988654
No 138
>PF10041 DUF2277: Uncharacterized conserved protein (DUF2277); InterPro: IPR018735 Members of this family of hypothetical bacterial proteins have no known function.
Probab=60.24 E-value=45 Score=24.72 Aligned_cols=45 Identities=22% Similarity=0.182 Sum_probs=31.3
Q ss_pred cCcceecccCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHH
Q 019721 44 TDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKE 88 (336)
Q Consensus 44 ~d~Y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~~~~~~~~f~~ 88 (336)
+|--.+-++.+.||++||..|=.+..+|..=-..++....+.|..
T Consensus 3 RnI~~L~~fePpaT~~EI~aAAlQyVRKvSG~~~Ps~an~eaF~~ 47 (78)
T PF10041_consen 3 RNIKTLRNFEPPATDEEIRAAALQYVRKVSGFRKPSAANAEAFDR 47 (78)
T ss_pred cchhhhcCCCCCCCHHHHHHHHHHHHHHHccCCCcchhhHHHHHH
Confidence 344445578899999999999888888876555554444555543
No 139
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=58.42 E-value=6.5 Score=41.13 Aligned_cols=51 Identities=24% Similarity=0.546 Sum_probs=34.7
Q ss_pred eeCCCCCCCCccCCCCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCcceEEeeeeeecCCceE
Q 019721 192 ETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGE 259 (336)
Q Consensus 192 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~ 259 (336)
..|+.|+.. .....+-|+.|+.+-. ...|+.|+-.-..-...|..|+..-.
T Consensus 2 ~~Cp~Cg~~---n~~~akFC~~CG~~l~--------------~~~Cp~CG~~~~~~~~fC~~CG~~~~ 52 (645)
T PRK14559 2 LICPQCQFE---NPNNNRFCQKCGTSLT--------------HKPCPQCGTEVPVDEAHCPNCGAETG 52 (645)
T ss_pred CcCCCCCCc---CCCCCccccccCCCCC--------------CCcCCCCCCCCCcccccccccCCccc
Confidence 469999543 3344578999954421 14699998776666789999987543
No 140
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=58.37 E-value=4.5 Score=44.14 Aligned_cols=29 Identities=34% Similarity=0.732 Sum_probs=23.8
Q ss_pred ecCCCCCCcceEEe---------eeeeecCCceEEeee
Q 019721 235 STCSKCGGDGKIII---------DHCRRCGGNGEVQSK 263 (336)
Q Consensus 235 ~~C~~C~G~G~~~~---------~~C~~C~g~g~~~~~ 263 (336)
-.|+.|.|.|.+.. ..|+.|+|...-.+.
T Consensus 737 G~C~~C~G~G~~~~~~~f~~~~~~~C~~C~G~R~~~e~ 774 (924)
T TIGR00630 737 GRCEACQGDGVIKIEMHFLPDVYVPCEVCKGKRYNRET 774 (924)
T ss_pred CCCCCCccceEEEEEccCCCCcccCCCCcCCceeChHH
Confidence 46999999999874 589999998876553
No 141
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=53.69 E-value=9.5 Score=41.79 Aligned_cols=29 Identities=34% Similarity=0.724 Sum_probs=23.7
Q ss_pred ecCCCCCCcceEEe---------eeeeecCCceEEeee
Q 019721 235 STCSKCGGDGKIII---------DHCRRCGGNGEVQSK 263 (336)
Q Consensus 235 ~~C~~C~G~G~~~~---------~~C~~C~g~g~~~~~ 263 (336)
-.|+.|.|.|.+.. ..|+.|+|.....+.
T Consensus 739 G~C~~C~G~G~~~~~~~f~~~~~~~C~~C~G~R~~~e~ 776 (943)
T PRK00349 739 GRCEACQGDGVIKIEMHFLPDVYVPCDVCKGKRYNRET 776 (943)
T ss_pred CCCCcccccceEEEEeccCCCccccCccccCccccccc
Confidence 46999999999874 489999998876554
No 142
>PRK05978 hypothetical protein; Provisional
Probab=52.07 E-value=7.2 Score=32.87 Aligned_cols=7 Identities=43% Similarity=1.450 Sum_probs=3.8
Q ss_pred ecCCCCC
Q 019721 235 STCSKCG 241 (336)
Q Consensus 235 ~~C~~C~ 241 (336)
..|+.|.
T Consensus 53 ~~C~~CG 59 (148)
T PRK05978 53 DHCAACG 59 (148)
T ss_pred CCccccC
Confidence 4555554
No 143
>PF03833 PolC_DP2: DNA polymerase II large subunit DP2; InterPro: IPR016033 DP2 is the large subunit of a two-subunit novel archaebacterial replicative DNA polymerase first characterised for Pyrococcus furiosus. The structure of DP2 appears to be organised as a ~950 residue component separated from a ~300 residue component by a ~150 residue intein. The other subunit, DP1, has sequence similarity to the eukaryotic DNA polymerase delta small subunit. This entry represents the N-terminal ~950 residue component of DP2.; GO: 0003887 DNA-directed DNA polymerase activity; PDB: 3O59_X.
Probab=52.02 E-value=4.8 Score=42.84 Aligned_cols=51 Identities=24% Similarity=0.646 Sum_probs=0.0
Q ss_pred eeeCCCCCCCCccCCCCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCcceEEeeeeeecCCceEEe
Q 019721 191 FETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQ 261 (336)
Q Consensus 191 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~~~ 261 (336)
...|+.|.-. +....|+.|+..-..+ ..|+.|+-. .....|++|+......
T Consensus 655 ~r~Cp~Cg~~-----t~~~~Cp~CG~~T~~~-------------~~Cp~C~~~--~~~~~C~~C~~~~~~~ 705 (900)
T PF03833_consen 655 RRRCPKCGKE-----TFYNRCPECGSHTEPV-------------YVCPDCGIE--VEEDECPKCGRETTSY 705 (900)
T ss_dssp -----------------------------------------------------------------------
T ss_pred cccCcccCCc-----chhhcCcccCCccccc-------------eeccccccc--cCccccccccccCccc
Confidence 4689999543 3456899997664322 568888753 2345899998765433
No 144
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=49.92 E-value=14 Score=39.46 Aligned_cols=28 Identities=36% Similarity=0.754 Sum_probs=22.4
Q ss_pred ecCCCCCCcceEEe---------eeeeecCCceEEee
Q 019721 235 STCSKCGGDGKIII---------DHCRRCGGNGEVQS 262 (336)
Q Consensus 235 ~~C~~C~G~G~~~~---------~~C~~C~g~g~~~~ 262 (336)
-.|.+|+|.|.+.. .+|..|+|..+-.+
T Consensus 731 GRCe~C~GdG~ikIeM~FLpdVyv~CevC~GkRYn~E 767 (935)
T COG0178 731 GRCEACQGDGVIKIEMHFLPDVYVPCEVCHGKRYNRE 767 (935)
T ss_pred cCCccccCCceEEEEeccCCCceeeCCCcCCcccccc
Confidence 57999999998864 48999999776443
No 145
>PF12434 Malate_DH: Malate dehydrogenase enzyme
Probab=48.47 E-value=21 Score=20.94 Aligned_cols=17 Identities=24% Similarity=0.460 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHhCC
Q 019721 58 LQEIKTSYRKLARKYHP 74 (336)
Q Consensus 58 ~~eIk~ayr~la~~~hP 74 (336)
.++.+.+.|+.|+.||-
T Consensus 10 ~~~~r~~lR~AALeYHe 26 (28)
T PF12434_consen 10 KEDKRAQLRQAALEYHE 26 (28)
T ss_pred hHHHHHHHHHHHHHhcc
Confidence 37788999999999993
No 146
>PF07709 SRR: Seven Residue Repeat; InterPro: IPR011714 This repeat is found in some Plasmodium and Theileria proteins.
Probab=47.95 E-value=11 Score=18.41 Aligned_cols=13 Identities=54% Similarity=0.902 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHhc
Q 019721 85 KFKEISSAYEVLS 97 (336)
Q Consensus 85 ~f~~i~~Ay~vL~ 97 (336)
.|..+..||+.|+
T Consensus 2 ~~~~V~~aY~~l~ 14 (14)
T PF07709_consen 2 KFEKVKNAYEQLS 14 (14)
T ss_pred cHHHHHHHHHhcC
Confidence 4778888888764
No 147
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=46.69 E-value=22 Score=33.69 Aligned_cols=21 Identities=19% Similarity=0.686 Sum_probs=11.3
Q ss_pred cCCCCCCcceEEeeeeeecCC
Q 019721 236 TCSKCGGDGKIIIDHCRRCGG 256 (336)
Q Consensus 236 ~C~~C~G~G~~~~~~C~~C~g 256 (336)
.|+.|.-.=...+..|+.|+.
T Consensus 214 ~CslC~teW~~~R~~C~~Cg~ 234 (309)
T PRK03564 214 HCNLCESEWHVVRVKCSNCEQ 234 (309)
T ss_pred EcCCCCCcccccCccCCCCCC
Confidence 355555555555555555554
No 148
>PF14687 DUF4460: Domain of unknown function (DUF4460)
Probab=46.17 E-value=44 Score=26.76 Aligned_cols=45 Identities=24% Similarity=0.399 Sum_probs=32.4
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCCCC-Cc----chHHHHHHHHHHHHHhch
Q 019721 54 QNATLQEIKTSYRKLARKYHPDINK-SP----GAEEKFKEISSAYEVLSD 98 (336)
Q Consensus 54 ~~a~~~eIk~ayr~la~~~hPd~~~-~~----~~~~~f~~i~~Ay~vL~d 98 (336)
+..+..+++.|.|..-++-|||.-. .| ..++-++.++.-.+.|..
T Consensus 4 r~~~~~~l~~aLr~Fy~~VHPDlF~~~P~~k~~Ne~SLk~Ln~~Ld~l~~ 53 (112)
T PF14687_consen 4 RNLSSPDLRSALRPFYFAVHPDLFGQHPEEKQVNEESLKLLNSYLDSLKK 53 (112)
T ss_pred hhhhhHHHHHHHHHHHHHhCCcccccChHHHHhhHHHHHHHHHHHHHHhc
Confidence 3456788999999999999999643 23 245567777776666653
No 149
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=45.74 E-value=12 Score=43.69 Aligned_cols=30 Identities=23% Similarity=0.363 Sum_probs=23.9
Q ss_pred eeeCCCCCCCCccCC------CCcccCCCCCCccEE
Q 019721 191 FETCDSCGGTGAKSS------NCIQSCKACWGRGGV 220 (336)
Q Consensus 191 ~~~C~~C~G~G~~~~------~~~~~C~~C~G~G~~ 220 (336)
.-.|+.|.|.|.... ....+|+.|+|+.+.
T Consensus 1607 ~GrC~~C~G~G~i~i~m~fl~dv~~~C~~C~G~R~~ 1642 (1809)
T PRK00635 1607 QGQCSDCWGLGYQWIDRAFYALEKRPCPTCSGFRIQ 1642 (1809)
T ss_pred CCCCCCCccCceEEEecccCCCcccCCCCCCCcCCC
Confidence 457999999998632 346899999999864
No 150
>PRK00564 hypA hydrogenase nickel incorporation protein; Provisional
Probab=44.88 E-value=50 Score=26.54 Aligned_cols=32 Identities=13% Similarity=0.309 Sum_probs=16.2
Q ss_pred eeeeeCCCCCCCCccCCCCcccCCCCCCccEE
Q 019721 189 SCFETCDSCGGTGAKSSNCIQSCKACWGRGGV 220 (336)
Q Consensus 189 ~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~ 220 (336)
+....|..|+-...........||.|++....
T Consensus 69 p~~~~C~~Cg~~~~~~~~~~~~CP~Cgs~~~~ 100 (117)
T PRK00564 69 KVELECKDCSHVFKPNALDYGVCEKCHSKNVI 100 (117)
T ss_pred CCEEEhhhCCCccccCCccCCcCcCCCCCceE
Confidence 44567888864433322222236666655433
No 151
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=43.61 E-value=16 Score=38.76 Aligned_cols=50 Identities=28% Similarity=0.642 Sum_probs=34.1
Q ss_pred eeeCCCCCCCCccCCCCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCcceEEeeeeeecCCc
Q 019721 191 FETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGN 257 (336)
Q Consensus 191 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~~~~~C~~C~g~ 257 (336)
...|..|. ....|+.|...=...+.. ..-.|..|+-. ..+...|+.|++.
T Consensus 435 ~l~C~~Cg--------~v~~Cp~Cd~~lt~H~~~--------~~L~CH~Cg~~-~~~p~~Cp~Cgs~ 484 (730)
T COG1198 435 LLLCRDCG--------YIAECPNCDSPLTLHKAT--------GQLRCHYCGYQ-EPIPQSCPECGSE 484 (730)
T ss_pred eeecccCC--------CcccCCCCCcceEEecCC--------CeeEeCCCCCC-CCCCCCCCCCCCC
Confidence 57899994 357899998763222111 12579999877 5566789999886
No 152
>PF08792 A2L_zn_ribbon: A2L zinc ribbon domain; InterPro: IPR014900 This zinc ribbon protein is found associated with some viral A2L transcription factors [].
Probab=40.89 E-value=20 Score=22.08 Aligned_cols=13 Identities=38% Similarity=0.761 Sum_probs=8.1
Q ss_pred ccCCCCCCccEEE
Q 019721 209 QSCKACWGRGGVL 221 (336)
Q Consensus 209 ~~C~~C~G~G~~~ 221 (336)
..|..|++.|.+.
T Consensus 4 ~~C~~C~~~~i~~ 16 (33)
T PF08792_consen 4 KKCSKCGGNGIVN 16 (33)
T ss_pred eEcCCCCCCeEEE
Confidence 4566777777553
No 153
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=40.26 E-value=10 Score=34.48 Aligned_cols=15 Identities=27% Similarity=0.793 Sum_probs=9.7
Q ss_pred ccCCCCCCccEEEEe
Q 019721 209 QSCKACWGRGGVLKT 223 (336)
Q Consensus 209 ~~C~~C~G~G~~~~~ 223 (336)
.+||.|+|+|++.+.
T Consensus 39 vtCPTCqGtGrIP~e 53 (238)
T PF07092_consen 39 VTCPTCQGTGRIPRE 53 (238)
T ss_pred CcCCCCcCCccCCcc
Confidence 467777777766543
No 154
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=40.07 E-value=19 Score=28.67 Aligned_cols=25 Identities=28% Similarity=0.445 Sum_probs=14.1
Q ss_pred eeeCCCCCCCCccCCCCcccCCCCC
Q 019721 191 FETCDSCGGTGAKSSNCIQSCKACW 215 (336)
Q Consensus 191 ~~~C~~C~G~G~~~~~~~~~C~~C~ 215 (336)
.++|+.|.-.-.--.....+||.|+
T Consensus 9 KR~Cp~CG~kFYDLnk~PivCP~CG 33 (108)
T PF09538_consen 9 KRTCPSCGAKFYDLNKDPIVCPKCG 33 (108)
T ss_pred cccCCCCcchhccCCCCCccCCCCC
Confidence 4567777555444444455566663
No 155
>PRK12336 translation initiation factor IF-2 subunit beta; Provisional
Probab=37.96 E-value=1.1e+02 Score=27.09 Aligned_cols=12 Identities=33% Similarity=0.465 Sum_probs=7.3
Q ss_pred HHHHHHHHHhch
Q 019721 87 KEISSAYEVLSD 98 (336)
Q Consensus 87 ~~i~~Ay~vL~d 98 (336)
..+..||+.|.+
T Consensus 5 ~lL~r~~~~l~~ 16 (201)
T PRK12336 5 SLLDRAMEVLPE 16 (201)
T ss_pred HHHHHHHHHCCc
Confidence 456667776644
No 156
>PRK14873 primosome assembly protein PriA; Provisional
Probab=36.81 E-value=25 Score=37.02 Aligned_cols=58 Identities=24% Similarity=0.516 Sum_probs=37.3
Q ss_pred EEEEEeee-----eeeCCCCCCCCccCCCCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCcceEEeeeeeecCCc
Q 019721 183 QRGIEVSC-----FETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGN 257 (336)
Q Consensus 183 ~~~v~~~~-----~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~~~~~C~~C~g~ 257 (336)
..-+-++| ...|..|. ....|+.|.+.=...+.. ..-.|..|+-.- ....|+.|++.
T Consensus 370 qvll~lnRrGyap~l~C~~Cg--------~~~~C~~C~~~L~~h~~~--------~~l~Ch~CG~~~--~p~~Cp~Cgs~ 431 (665)
T PRK14873 370 PVLVQVPRRGYVPSLACARCR--------TPARCRHCTGPLGLPSAG--------GTPRCRWCGRAA--PDWRCPRCGSD 431 (665)
T ss_pred cEEEEecCCCCCCeeEhhhCc--------CeeECCCCCCceeEecCC--------CeeECCCCcCCC--cCccCCCCcCC
Confidence 44455555 46888884 357899998764332211 124699998653 47789999875
Q ss_pred e
Q 019721 258 G 258 (336)
Q Consensus 258 g 258 (336)
.
T Consensus 432 ~ 432 (665)
T PRK14873 432 R 432 (665)
T ss_pred c
Confidence 3
No 157
>smart00440 ZnF_C2C2 C2C2 Zinc finger. Nucleic-acid-binding motif in transcriptional elongation factor TFIIS and RNA polymerases.
Probab=35.25 E-value=64 Score=20.64 Aligned_cols=32 Identities=25% Similarity=0.530 Sum_probs=15.6
Q ss_pred cCCCCCCccEEEEeeecC--CcceeeeecCCCCC
Q 019721 210 SCKACWGRGGVLKTQRTP--FGLISQVSTCSKCG 241 (336)
Q Consensus 210 ~C~~C~G~G~~~~~~~~~--~~~~~~~~~C~~C~ 241 (336)
.|+.|+....+..+.++. =..++....|..|+
T Consensus 2 ~Cp~C~~~~a~~~q~Q~RsaDE~mT~fy~C~~C~ 35 (40)
T smart00440 2 PCPKCGNREATFFQLQTRSADEPMTVFYVCTKCG 35 (40)
T ss_pred cCCCCCCCeEEEEEEcccCCCCCCeEEEEeCCCC
Confidence 577777666655443222 11223334565554
No 158
>COG5349 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.17 E-value=12 Score=30.38 Aligned_cols=11 Identities=36% Similarity=1.150 Sum_probs=5.5
Q ss_pred cCCCCCCccEEE
Q 019721 210 SCKACWGRGGVL 221 (336)
Q Consensus 210 ~C~~C~G~G~~~ 221 (336)
.|++| |.|+..
T Consensus 23 rCP~C-GeGrLF 33 (126)
T COG5349 23 RCPRC-GEGRLF 33 (126)
T ss_pred CCCCC-CCchhh
Confidence 45555 455443
No 159
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=34.25 E-value=24 Score=32.16 Aligned_cols=14 Identities=43% Similarity=0.926 Sum_probs=12.4
Q ss_pred ecCCCCCCcceEEe
Q 019721 235 STCSKCGGDGKIII 248 (336)
Q Consensus 235 ~~C~~C~G~G~~~~ 248 (336)
.+|+.|+|.|++.+
T Consensus 39 vtCPTCqGtGrIP~ 52 (238)
T PF07092_consen 39 VTCPTCQGTGRIPR 52 (238)
T ss_pred CcCCCCcCCccCCc
Confidence 58999999999875
No 160
>COG1326 Uncharacterized archaeal Zn-finger protein [General function prediction only]
Probab=32.95 E-value=81 Score=27.79 Aligned_cols=19 Identities=32% Similarity=0.739 Sum_probs=15.0
Q ss_pred EEEeCCC--CCCCcEEEEccC
Q 019721 267 KVVIPPG--VSNGATMQIRGE 285 (336)
Q Consensus 267 ~V~Ip~G--~~~G~~i~l~G~ 285 (336)
.|.+||| ++-|+.|.+.++
T Consensus 66 ~vel~~gE~l~vGDei~vd~e 86 (201)
T COG1326 66 EVELDPGETLKVGDEIEVDGE 86 (201)
T ss_pred eEecCCCCeEecCCEEEEcCC
Confidence 6788888 788888888665
No 161
>PF10080 DUF2318: Predicted membrane protein (DUF2318); InterPro: IPR018758 This domain of unknown function is found in hypothetical bacterial membrane proteins with no known function.
Probab=32.22 E-value=1.1e+02 Score=24.13 Aligned_cols=24 Identities=29% Similarity=0.629 Sum_probs=18.0
Q ss_pred ecCCCCCCcceEEe---eeeeecCCce
Q 019721 235 STCSKCGGDGKIII---DHCRRCGGNG 258 (336)
Q Consensus 235 ~~C~~C~G~G~~~~---~~C~~C~g~g 258 (336)
..|..|.++|+..+ ..|..|+...
T Consensus 36 daCeiC~~~GY~q~g~~lvC~~C~~~~ 62 (102)
T PF10080_consen 36 DACEICGPKGYYQEGDQLVCKNCGVRF 62 (102)
T ss_pred EeccccCCCceEEECCEEEEecCCCEE
Confidence 78888888888764 5788887533
No 162
>PRK10862 SoxR reducing system protein RseC; Provisional
Probab=31.59 E-value=1.1e+02 Score=25.95 Aligned_cols=20 Identities=10% Similarity=0.199 Sum_probs=12.4
Q ss_pred eEEEEEeCCCCCCCcEEEEc
Q 019721 264 RSMKVVIPPGVSNGATMQIR 283 (336)
Q Consensus 264 ~~l~V~Ip~G~~~G~~i~l~ 283 (336)
..+++.-+.+.+.||.+.+.
T Consensus 49 ~~~~v~~~~~~~vGD~V~v~ 68 (154)
T PRK10862 49 HQLVVPSSQPLVPGQKVELG 68 (154)
T ss_pred eEEEecCCCCCCCCCEEEEe
Confidence 34556666667777776653
No 163
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=31.26 E-value=43 Score=20.99 Aligned_cols=9 Identities=33% Similarity=0.767 Sum_probs=4.4
Q ss_pred eeCCCCCCC
Q 019721 192 ETCDSCGGT 200 (336)
Q Consensus 192 ~~C~~C~G~ 200 (336)
+.||.|+..
T Consensus 3 i~CP~C~~~ 11 (37)
T PF13719_consen 3 ITCPNCQTR 11 (37)
T ss_pred EECCCCCce
Confidence 345555443
No 164
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=30.66 E-value=55 Score=31.02 Aligned_cols=22 Identities=23% Similarity=0.662 Sum_probs=13.1
Q ss_pred cCCCCCCcceEEeeeeeecCCc
Q 019721 236 TCSKCGGDGKIIIDHCRRCGGN 257 (336)
Q Consensus 236 ~C~~C~G~G~~~~~~C~~C~g~ 257 (336)
.|+.|.-.=...+..|+.|+..
T Consensus 212 ~CslC~teW~~~R~~C~~Cg~~ 233 (305)
T TIGR01562 212 SCSLCATEWHYVRVKCSHCEES 233 (305)
T ss_pred EcCCCCCcccccCccCCCCCCC
Confidence 4666665555556666666553
No 165
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=30.66 E-value=35 Score=27.97 Aligned_cols=27 Identities=7% Similarity=-0.065 Sum_probs=16.4
Q ss_pred eeeCCCCCCCCccCCCCcccCCCCCCc
Q 019721 191 FETCDSCGGTGAKSSNCIQSCKACWGR 217 (336)
Q Consensus 191 ~~~C~~C~G~G~~~~~~~~~C~~C~G~ 217 (336)
+++|+.|.-.-.--......|+.|+-.
T Consensus 9 Kr~Cp~cg~kFYDLnk~p~vcP~cg~~ 35 (129)
T TIGR02300 9 KRICPNTGSKFYDLNRRPAVSPYTGEQ 35 (129)
T ss_pred cccCCCcCccccccCCCCccCCCcCCc
Confidence 457888865555444556677777443
No 166
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=30.60 E-value=45 Score=26.65 Aligned_cols=30 Identities=17% Similarity=0.273 Sum_probs=15.3
Q ss_pred eeeeeCCCCCCCCccCCCCcccCCCCCCccE
Q 019721 189 SCFETCDSCGGTGAKSSNCIQSCKACWGRGG 219 (336)
Q Consensus 189 ~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~ 219 (336)
+....|..|........ ....||.|++...
T Consensus 68 p~~~~C~~Cg~~~~~~~-~~~~CP~Cgs~~~ 97 (113)
T PRK12380 68 PAQAWCWDCSQVVEIHQ-HDAQCPHCHGERL 97 (113)
T ss_pred CcEEEcccCCCEEecCC-cCccCcCCCCCCc
Confidence 44567888864433321 1223666665543
No 167
>PF01096 TFIIS_C: Transcription factor S-II (TFIIS); InterPro: IPR001222 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIs (TFIIS). In eukaryotes the initiation of transcription of protein encoding genes by polymerase II (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least eight different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, -IIH and -IIS []. During mRNA elongation, Pol II can encounter DNA sequences that cause reverse movement of the enzyme. Such backtracking involves extrusion of the RNA 3'-end into the pore, and can lead to transcriptional arrest. Escape from arrest requires cleavage of the extruded RNA with the help of TFIIS, which induces mRNA cleavage by enhancing the intrinsic nuclease activity of RNA polymerase (Pol) II, past template-encoded pause sites []. TFIIS extends from the polymerase surface via a pore to the internal active site. Two essential and invariant acidic residues in a TFIIS loop complement the Pol II active site and could position a metal ion and a water molecule for hydrolytic RNA cleavage. TFIIS also induces extensive structural changes in Pol II that would realign nucleic acids in the active centre. TFIIS is a protein of about 300 amino acids. It contains three regions: a variable N-terminal domain not required for TFIIS activity; a conserved central domain required for Pol II binding; and a conserved C-terminal C4-type zinc finger essential for RNA cleavage. The zinc finger folds in a conformation termed a zinc ribbon [] characterised by a three-stranded antiparallel beta-sheet and two beta-hairpins. A backbone model for Pol II-TFIIS complex was obtained from X-ray analysis. It shows that a beta hairpin protrudes from the zinc finger and complements the pol II active site []. Some viral proteins also contain the TFIIS zinc ribbon C-terminal domain. The Vaccinia virus protein, unlike its eukaryotic homologue, is an integral RNA polymerase subunit rather than a readily separable transcription factor []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding, 0006351 transcription, DNA-dependent; PDB: 3M4O_I 3S14_I 2E2J_I 4A3J_I 3HOZ_I 1TWA_I 3S1Q_I 3S1N_I 1TWG_I 3I4M_I ....
Probab=29.89 E-value=71 Score=20.27 Aligned_cols=32 Identities=22% Similarity=0.472 Sum_probs=14.7
Q ss_pred cCCCCCCccEEEEeeecCC--cceeeeecCCCCC
Q 019721 210 SCKACWGRGGVLKTQRTPF--GLISQVSTCSKCG 241 (336)
Q Consensus 210 ~C~~C~G~G~~~~~~~~~~--~~~~~~~~C~~C~ 241 (336)
.|+.|+....+..+.++.. ..+.....|..|+
T Consensus 2 ~Cp~Cg~~~a~~~~~Q~rsaDE~~T~fy~C~~C~ 35 (39)
T PF01096_consen 2 KCPKCGHNEAVFFQIQTRSADEPMTLFYVCCNCG 35 (39)
T ss_dssp --SSS-SSEEEEEEESSSSSSSSSEEEEEESSST
T ss_pred CCcCCCCCeEEEEEeeccCCCCCCeEEEEeCCCC
Confidence 5777877776665443321 1233334565554
No 168
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=29.49 E-value=67 Score=26.96 Aligned_cols=35 Identities=23% Similarity=0.140 Sum_probs=15.9
Q ss_pred cceeeccc---cccCCCCcccccccccccccCcceecc
Q 019721 17 STSFSFKW---NYCSGNNRSHRRGMIRAAGTDYYSTLN 51 (336)
Q Consensus 17 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~d~Y~iLg 51 (336)
-||.+|.+ ...+++-.+.+.++-.....|.|+||-
T Consensus 30 r~~~~f~rpktl~l~r~pky~r~~~~~~~~md~~~IIk 67 (145)
T PTZ00191 30 RTSVRFFRPKTLRLPKKPKYPRRVKPASKKLDKYSIIK 67 (145)
T ss_pred eecceecCCccccCCCCCCCcccccCCCCCCchhhhhh
Confidence 45555532 333333344334333344556666553
No 169
>PF14205 Cys_rich_KTR: Cysteine-rich KTR
Probab=29.34 E-value=91 Score=21.59 Aligned_cols=11 Identities=18% Similarity=0.625 Sum_probs=6.6
Q ss_pred eeeecCCceEE
Q 019721 250 HCRRCGGNGEV 260 (336)
Q Consensus 250 ~C~~C~g~g~~ 260 (336)
.|+.|...-.+
T Consensus 30 yCpKCK~EtlI 40 (55)
T PF14205_consen 30 YCPKCKQETLI 40 (55)
T ss_pred cCCCCCceEEE
Confidence 57777664433
No 170
>PF03367 zf-ZPR1: ZPR1 zinc-finger domain; InterPro: IPR004457 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents ZPR1-type zinc finger domains. An orthologous protein found once in each of the completed archaeal genomes corresponds to a zinc finger-containing domain repeated as the N-terminal and C-terminal halves of the mouse protein ZPR1. ZPR1 is an experimentally proven zinc-binding protein that binds the tyrosine kinase domain of the epidermal growth factor receptor (EGFR); binding is inhibited by EGF stimulation and tyrosine phosphorylation, and activation by EGF is followed by some redistribution of ZPR1 to the nucleus. By analogy, other proteins with the ZPR1 zinc finger domain may be regulatory proteins that sense protein phosphorylation state and/or participate in signal transduction (see also IPR004470 from INTERPRO). Deficiencies in ZPR1 may contribute to neurodegenerative disorders. ZPR1 appears to be down-regulated in patients with spinal muscular atrophy (SMA), a disease characterised by degeneration of the alpha-motor neurons in the spinal cord that can arise from mutations affecting the expression of Survival Motor Neurons (SMN) []. ZPR1 interacts with complexes formed by SMN [], and may act as a modifier that effects the severity of SMA. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2QKD_A.
Probab=29.02 E-value=70 Score=27.28 Aligned_cols=37 Identities=22% Similarity=0.451 Sum_probs=18.0
Q ss_pred ccCCCCCCccEEE-EeeecC-Cccee-eeecCCCCCCcce
Q 019721 209 QSCKACWGRGGVL-KTQRTP-FGLIS-QVSTCSKCGGDGK 245 (336)
Q Consensus 209 ~~C~~C~G~G~~~-~~~~~~-~~~~~-~~~~C~~C~G~G~ 245 (336)
..|+.|+..|... ....+| |+-+. ....|+.|+-+-.
T Consensus 2 s~Cp~C~~~~~~~~~~~~IP~F~evii~sf~C~~CGyk~~ 41 (161)
T PF03367_consen 2 SLCPNCGENGTTRILLTDIPYFKEVIIMSFECEHCGYKNN 41 (161)
T ss_dssp EE-TTTSSCCEEEEEEEEETTTEEEEEEEEE-TTT--EEE
T ss_pred CcCCCCCCCcEEEEEEEcCCCCceEEEEEeECCCCCCEee
Confidence 3688888888643 223344 33333 3368888875543
No 171
>PF01846 FF: FF domain; InterPro: IPR002713 The FF domain may be involved in protein-protein interaction []. It often occurs as multiple copies and often accompanies WW domains IPR001202 from INTERPRO. PRP40 from yeast encodes a novel, essential splicing component that associates with the yeast U1 small nuclear ribonucleoprotein particle [].; PDB: 3HFH_B 2KIS_A 2DOD_A 2JUC_A 2LKS_A 1UZC_A 2KZG_A 2L9V_A 2DOF_A 2KFD_A ....
Probab=28.82 E-value=63 Score=21.35 Aligned_cols=14 Identities=7% Similarity=0.434 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHhC
Q 019721 60 EIKTSYRKLARKYH 73 (336)
Q Consensus 60 eIk~ayr~la~~~h 73 (336)
+.+.+|++|...+.
T Consensus 1 ~a~~~F~~lL~e~~ 14 (51)
T PF01846_consen 1 KAREAFKELLKEHK 14 (51)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHhCC
Confidence 46889998877765
No 172
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=28.27 E-value=35 Score=34.70 Aligned_cols=50 Identities=30% Similarity=0.568 Sum_probs=28.3
Q ss_pred eeeCCCCCCCCccCCCCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCcceEEeeeeeecCCc
Q 019721 191 FETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGN 257 (336)
Q Consensus 191 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~~~~~C~~C~g~ 257 (336)
...|..|. ....|+.|.+.=...+.. ..-.|..|+-+- .....|+.|++.
T Consensus 213 ~~~C~~Cg--------~~~~C~~C~~~l~~h~~~--------~~l~Ch~Cg~~~-~~~~~Cp~C~s~ 262 (505)
T TIGR00595 213 NLLCRSCG--------YILCCPNCDVSLTYHKKE--------GKLRCHYCGYQE-PIPKTCPQCGSE 262 (505)
T ss_pred eeEhhhCc--------CccCCCCCCCceEEecCC--------CeEEcCCCcCcC-CCCCCCCCCCCC
Confidence 35788884 346788887643221111 114577776332 234678888764
No 173
>PF12057 DUF3538: Domain of unknown function (DUF3538); InterPro: IPR021925 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 120 amino acids in length. This domain is found associated with PF00240 from PFAM. This domain has a conserved SDL sequence motif.
Probab=27.67 E-value=46 Score=27.01 Aligned_cols=19 Identities=37% Similarity=0.419 Sum_probs=13.1
Q ss_pred hHHHHHHHHHHHHHhchhc
Q 019721 82 AEEKFKEISSAYEVLSDDE 100 (336)
Q Consensus 82 ~~~~f~~i~~Ay~vL~d~~ 100 (336)
..|.++.+..||.+|||=.
T Consensus 51 VsEalh~lsHA~hAlSDL~ 69 (120)
T PF12057_consen 51 VSEALHYLSHAYHALSDLM 69 (120)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4566777777888887643
No 174
>PF01155 HypA: Hydrogenase expression/synthesis hypA family; InterPro: IPR000688 Bacterial membrane-bound nickel-dependent hydrogenases requires a number of accessory proteins which are involved in their maturation. The exact role of these proteins is not yet clear, but some seem to be required for the incorporation of the nickel ions []. One of these proteins is generally known as hypA. It is a protein of about 12 to 14 kDa that contains, in its C-terminal region, four conserved cysteines that form a zinc-finger like motif. Escherichia coli has two proteins that belong to this family, hypA and hybF. A homologue, MJ0214, has also been found in a number of archaeal species, including the genome of Methanocaldococcus jannaschii (Methanococcus jannaschii).; GO: 0016151 nickel ion binding, 0006464 protein modification process; PDB: 2KDX_A 3A44_D 3A43_B.
Probab=27.52 E-value=36 Score=27.12 Aligned_cols=30 Identities=20% Similarity=0.314 Sum_probs=14.1
Q ss_pred eeeeeCCCCCCCCccCCCCcccCCCCCCccE
Q 019721 189 SCFETCDSCGGTGAKSSNCIQSCKACWGRGG 219 (336)
Q Consensus 189 ~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~ 219 (336)
+....|..|.-........ ..||.|++...
T Consensus 68 p~~~~C~~Cg~~~~~~~~~-~~CP~Cgs~~~ 97 (113)
T PF01155_consen 68 PARARCRDCGHEFEPDEFD-FSCPRCGSPDV 97 (113)
T ss_dssp --EEEETTTS-EEECHHCC-HH-SSSSSS-E
T ss_pred CCcEECCCCCCEEecCCCC-CCCcCCcCCCc
Confidence 4456788886554433222 45666666553
No 175
>PF09862 DUF2089: Protein of unknown function (DUF2089); InterPro: IPR018658 This family consists of various hypothetical prokaryotic proteins.
Probab=26.82 E-value=50 Score=26.54 Aligned_cols=20 Identities=35% Similarity=0.926 Sum_probs=10.9
Q ss_pred CCCCCCcceEEeeeeeecCC
Q 019721 237 CSKCGGDGKIIIDHCRRCGG 256 (336)
Q Consensus 237 C~~C~G~G~~~~~~C~~C~g 256 (336)
||.|++.=.+.+..|..|+.
T Consensus 1 CPvCg~~l~vt~l~C~~C~t 20 (113)
T PF09862_consen 1 CPVCGGELVVTRLKCPSCGT 20 (113)
T ss_pred CCCCCCceEEEEEEcCCCCC
Confidence 55555555555556666653
No 176
>PRK03681 hypA hydrogenase nickel incorporation protein; Validated
Probab=25.73 E-value=62 Score=25.85 Aligned_cols=30 Identities=17% Similarity=0.393 Sum_probs=14.4
Q ss_pred eeeeeCCCCCCCCccCCCCcccCCCCCCcc
Q 019721 189 SCFETCDSCGGTGAKSSNCIQSCKACWGRG 218 (336)
Q Consensus 189 ~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G 218 (336)
+....|..|+-.-.........||.|++..
T Consensus 68 p~~~~C~~Cg~~~~~~~~~~~~CP~Cgs~~ 97 (114)
T PRK03681 68 EAECWCETCQQYVTLLTQRVRRCPQCHGDM 97 (114)
T ss_pred CcEEEcccCCCeeecCCccCCcCcCcCCCC
Confidence 445678888633222211223466665544
No 177
>TIGR00757 RNaseEG ribonuclease, Rne/Rng family. The C-terminal half of RNase E (excluded from the seed alignment for this model) lacks ribonuclease activity but participates in mRNA degradation by organizing the degradosome.
Probab=25.28 E-value=33 Score=33.98 Aligned_cols=13 Identities=31% Similarity=0.974 Sum_probs=9.0
Q ss_pred ecCCCCCCcceEE
Q 019721 235 STCSKCGGDGKII 247 (336)
Q Consensus 235 ~~C~~C~G~G~~~ 247 (336)
.+|+.|+|+|++.
T Consensus 391 ~~Cp~C~G~G~v~ 403 (414)
T TIGR00757 391 TVCPHCSGTGIVK 403 (414)
T ss_pred CCCCCCcCeeEEc
Confidence 5677777777654
No 178
>PRK05580 primosome assembly protein PriA; Validated
Probab=24.60 E-value=56 Score=34.53 Aligned_cols=51 Identities=27% Similarity=0.660 Sum_probs=29.4
Q ss_pred eeeCCCCCCCCccCCCCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCcceEEeeeeeecCCce
Q 019721 191 FETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNG 258 (336)
Q Consensus 191 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~~~~~C~~C~g~g 258 (336)
...|..|. ....|+.|.+.=...+.. ..-.|..|+-+- .....|+.|++..
T Consensus 381 ~~~C~~Cg--------~~~~C~~C~~~l~~h~~~--------~~l~Ch~Cg~~~-~~~~~Cp~Cg~~~ 431 (679)
T PRK05580 381 FLLCRDCG--------WVAECPHCDASLTLHRFQ--------RRLRCHHCGYQE-PIPKACPECGSTD 431 (679)
T ss_pred ceEhhhCc--------CccCCCCCCCceeEECCC--------CeEECCCCcCCC-CCCCCCCCCcCCe
Confidence 56788884 346788888742111110 114688887442 3346788887753
No 179
>PRK00464 nrdR transcriptional regulator NrdR; Validated
Probab=24.21 E-value=80 Score=26.78 Aligned_cols=9 Identities=22% Similarity=0.508 Sum_probs=5.7
Q ss_pred cCCCCCCcc
Q 019721 210 SCKACWGRG 218 (336)
Q Consensus 210 ~C~~C~G~G 218 (336)
.||.|+..-
T Consensus 2 ~cp~c~~~~ 10 (154)
T PRK00464 2 RCPFCGHPD 10 (154)
T ss_pred cCCCCCCCC
Confidence 466666655
No 180
>COG0089 RplW Ribosomal protein L23 [Translation, ribosomal structure and biogenesis]
Probab=24.20 E-value=70 Score=24.80 Aligned_cols=20 Identities=35% Similarity=0.400 Sum_probs=17.4
Q ss_pred ecccCCCCCHHHHHHHHHHH
Q 019721 49 TLNVRQNATLQEIKTSYRKL 68 (336)
Q Consensus 49 iLgv~~~a~~~eIk~ayr~l 68 (336)
++-|+++|+..|||+|..+|
T Consensus 25 vF~V~~~AtK~~IK~AvE~l 44 (94)
T COG0089 25 VFIVDPDATKPEIKAAVEEL 44 (94)
T ss_pred EEEECCCCCHHHHHHHHHHH
Confidence 56899999999999988765
No 181
>PF09285 Elong-fact-P_C: Elongation factor P, C-terminal; InterPro: IPR015365 These nucleic acid binding domains are predominantly found in elongation factor P, where they adopt an OB-fold, with five beta-strands forming a beta-barrel in a Greek-key topology []. ; GO: 0043043 peptide biosynthetic process, 0005737 cytoplasm; PDB: 1YBY_A 3OYY_B 1UEB_B 3HUW_V 3HUY_V 3A5Z_H.
Probab=24.11 E-value=64 Score=22.47 Aligned_cols=21 Identities=10% Similarity=0.357 Sum_probs=14.2
Q ss_pred EEEEEeCCCCCCCcEEEEccC
Q 019721 265 SMKVVIPPGVSNGATMQIRGE 285 (336)
Q Consensus 265 ~l~V~Ip~G~~~G~~i~l~G~ 285 (336)
-+.|.||+-++.|++|++.-+
T Consensus 29 G~~i~VP~FI~~Gd~I~VdT~ 49 (56)
T PF09285_consen 29 GAEIQVPLFIEEGDKIKVDTR 49 (56)
T ss_dssp S-EEEEETT--TT-EEEEETT
T ss_pred CCEEEccceecCCCEEEEECC
Confidence 357999999999999998543
No 182
>PF07739 TipAS: TipAS antibiotic-recognition domain; InterPro: IPR012925 TipAL is a bacterial transcriptional regulator of the MerR family. The tipA gene can be expressed as a long form, TipAL, and a short form, TipAS, which constitutes the C-terminal part of TipAL. TipAS forms the antibiotic-recognition domain []. This domain, which has an alpha-helical globin-like fold, is also found at the C terminus of other MerR family transcription factors, including Mta, a central regulator of multidrug resistance in Bacillus subtilis [], and SkgA from Caulobacter crescentus []. ; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent; PDB: 1NY9_A 3HH0_A 3QAO_A.
Probab=23.25 E-value=1e+02 Score=23.91 Aligned_cols=52 Identities=23% Similarity=0.543 Sum_probs=32.7
Q ss_pred ccCCCCC-HHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhchhccccccc-ccCC
Q 019721 51 NVRQNAT-LQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYD-RFGE 110 (336)
Q Consensus 51 gv~~~a~-~~eIk~ayr~la~~~hPd~~~~~~~~~~f~~i~~Ay~vL~d~~~r~~YD-~~G~ 110 (336)
|++++.. -.+|-+.++.+...+++ ...+.+..|.+.| +.||.-++.|| .++.
T Consensus 51 g~~p~s~evq~l~~~~~~~~~~~~~------~~~~~~~~l~~~y--~~~~~~~~~~~~~~~~ 104 (118)
T PF07739_consen 51 GVDPDSPEVQELAERWMELINQFTG------GDPELLRGLAQMY--VEDPRFAAMYDKKFGP 104 (118)
T ss_dssp T--TT-HHHHHHHHHHHHHHHHSS---------HHHHHHHHHHT--TSTHHHHHHHG-GGST
T ss_pred CCCcCCHHHHHHHHHHHHHHHHHhC------CCHHHHHHHHHHH--HcCHHHHhhccccCCH
Confidence 5566543 34466677777777776 2346788888888 67888888888 6654
No 183
>smart00841 Elong-fact-P_C Elongation factor P, C-terminal. These nucleic acid binding domains are predominantly found in elongation factor P, where they adopt an OB-fold, with five beta-strands forming a beta-barrel in a Greek-key topology PUBMED:15210970.
Probab=22.90 E-value=71 Score=22.24 Aligned_cols=21 Identities=14% Similarity=0.327 Sum_probs=17.6
Q ss_pred EEEEEeCCCCCCCcEEEEccC
Q 019721 265 SMKVVIPPGVSNGATMQIRGE 285 (336)
Q Consensus 265 ~l~V~Ip~G~~~G~~i~l~G~ 285 (336)
-++|.||+-++.|++|++.-+
T Consensus 29 G~~i~VP~FI~~Gd~I~V~T~ 49 (56)
T smart00841 29 GAVVQVPLFINEGDKIKVDTR 49 (56)
T ss_pred CCEEEcCCcccCCCEEEEECC
Confidence 358999999999999988543
No 184
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=22.58 E-value=62 Score=21.14 Aligned_cols=6 Identities=50% Similarity=1.619 Sum_probs=2.9
Q ss_pred eCCCCC
Q 019721 193 TCDSCG 198 (336)
Q Consensus 193 ~C~~C~ 198 (336)
.|+.|+
T Consensus 5 ~C~~CG 10 (46)
T PRK00398 5 KCARCG 10 (46)
T ss_pred ECCCCC
Confidence 355553
No 185
>PF13453 zf-TFIIB: Transcription factor zinc-finger
Probab=22.46 E-value=58 Score=20.75 Aligned_cols=6 Identities=33% Similarity=0.927 Sum_probs=3.0
Q ss_pred CCCCCC
Q 019721 211 CKACWG 216 (336)
Q Consensus 211 C~~C~G 216 (336)
||.|+.
T Consensus 2 CP~C~~ 7 (41)
T PF13453_consen 2 CPRCGT 7 (41)
T ss_pred cCCCCc
Confidence 555544
No 186
>PF09855 DUF2082: Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082); InterPro: IPR018652 This family of proteins contains various hypothetical prokaryotic proteins as well as some Zn-ribbon nucleic-acid-binding proteins.
Probab=22.46 E-value=1.2e+02 Score=21.69 Aligned_cols=9 Identities=22% Similarity=0.519 Sum_probs=3.8
Q ss_pred CCCCCCccE
Q 019721 211 CKACWGRGG 219 (336)
Q Consensus 211 C~~C~G~G~ 219 (336)
|+.|+.+-.
T Consensus 3 C~KCg~~~~ 11 (64)
T PF09855_consen 3 CPKCGNEEY 11 (64)
T ss_pred CCCCCCcce
Confidence 444444433
No 187
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=22.12 E-value=1.5e+02 Score=28.20 Aligned_cols=10 Identities=30% Similarity=0.797 Sum_probs=6.2
Q ss_pred eeeeecCCce
Q 019721 249 DHCRRCGGNG 258 (336)
Q Consensus 249 ~~C~~C~g~g 258 (336)
+.|..|++-.
T Consensus 253 e~C~~C~~Yl 262 (309)
T PRK03564 253 ESCGDCGTYL 262 (309)
T ss_pred eecccccccc
Confidence 5677776633
No 188
>PHA02998 RNA polymerase subunit; Provisional
Probab=21.97 E-value=1.2e+02 Score=26.32 Aligned_cols=34 Identities=15% Similarity=0.255 Sum_probs=17.6
Q ss_pred cccCCCCCCccEEEEeeecCCc--ceeeeecCCCCC
Q 019721 208 IQSCKACWGRGGVLKTQRTPFG--LISQVSTCSKCG 241 (336)
Q Consensus 208 ~~~C~~C~G~G~~~~~~~~~~~--~~~~~~~C~~C~ 241 (336)
..+|+.|++......+.++... .++....|..|.
T Consensus 143 ~v~CPkCg~~~A~f~qlQTRSADEPmT~FYkC~~CG 178 (195)
T PHA02998 143 NTPCPNCKSKNTTPMMIQTRAADEPPLVRHACRDCK 178 (195)
T ss_pred CCCCCCCCCCceEEEEEeeccCCCCceEEEEcCCCC
Confidence 3567777777665544433221 233334566664
No 189
>PF10080 DUF2318: Predicted membrane protein (DUF2318); InterPro: IPR018758 This domain of unknown function is found in hypothetical bacterial membrane proteins with no known function.
Probab=21.74 E-value=48 Score=26.07 Aligned_cols=24 Identities=33% Similarity=0.841 Sum_probs=13.8
Q ss_pred eeeCCCCCCCCccCCCCcccCCCC
Q 019721 191 FETCDSCGGTGAKSSNCIQSCKAC 214 (336)
Q Consensus 191 ~~~C~~C~G~G~~~~~~~~~C~~C 214 (336)
...|.-|.++|.........|..|
T Consensus 35 ~daCeiC~~~GY~q~g~~lvC~~C 58 (102)
T PF10080_consen 35 FDACEICGPKGYYQEGDQLVCKNC 58 (102)
T ss_pred EEeccccCCCceEEECCEEEEecC
Confidence 346766666666544445555555
No 190
>cd01780 PLC_epsilon_RA Ubiquitin-like domain of Phosphatidylinositide-specific phospholipase. PLC_epsilon_RA Phosphatidylinositide-specific phospholipase C (PLC) is a signaling enzyme that hydrolyzes membrane phospholipids to generate inositol triphosphate. PLC-epsilon represents a novel forth class of PLC that has a PLC catalytic core domain, a CDC25 guanine nucleotide exchange factor domain and two RA (Ras-association) domains of which the second is critical for Ras activation of the enzyme.
Probab=21.59 E-value=1.2e+02 Score=23.45 Aligned_cols=38 Identities=18% Similarity=0.230 Sum_probs=26.5
Q ss_pred cccccCcceecccCCCCCHHHHHHHHHHHHHHhCCCCC
Q 019721 40 RAAGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDIN 77 (336)
Q Consensus 40 ~~~~~d~Y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~ 77 (336)
......+|.||-++...|..+|-+.=--.|.+-+||-+
T Consensus 7 ~vs~dqP~~il~a~~~STa~Dvi~Qal~KA~rs~~~~~ 44 (93)
T cd01780 7 NVSPDQPYAILRAPRVSTAQDVIQQTLCKARRSNPNPS 44 (93)
T ss_pred cCCCCCCeeEEEccccccHHHHHHHHHHHhccCCCCcc
Confidence 44567899999999999888865543334555566643
No 191
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional
Probab=21.34 E-value=49 Score=23.30 Aligned_cols=6 Identities=50% Similarity=1.724 Sum_probs=2.8
Q ss_pred eeeecC
Q 019721 250 HCRRCG 255 (336)
Q Consensus 250 ~C~~C~ 255 (336)
.|+.|+
T Consensus 50 ~CP~CG 55 (59)
T PRK14890 50 TCPKCG 55 (59)
T ss_pred ECCCCC
Confidence 355544
No 192
>PRK14873 primosome assembly protein PriA; Provisional
Probab=21.31 E-value=69 Score=33.83 Aligned_cols=40 Identities=23% Similarity=0.518 Sum_probs=27.6
Q ss_pred eeeCCCCCCCCccC-CCCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCcc
Q 019721 191 FETCDSCGGTGAKS-SNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDG 244 (336)
Q Consensus 191 ~~~C~~C~G~G~~~-~~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G 244 (336)
...|+.|.+.=... ....-.|..|+-.- . ...|+.|++.-
T Consensus 392 ~~~C~~C~~~L~~h~~~~~l~Ch~CG~~~--~------------p~~Cp~Cgs~~ 432 (665)
T PRK14873 392 PARCRHCTGPLGLPSAGGTPRCRWCGRAA--P------------DWRCPRCGSDR 432 (665)
T ss_pred eeECCCCCCceeEecCCCeeECCCCcCCC--c------------CccCCCCcCCc
Confidence 46899998776643 33467899996431 1 15799999874
No 193
>PF12725 DUF3810: Protein of unknown function (DUF3810); InterPro: IPR024294 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 333 and 377 amino acids in length and contain a conserved HEXXH sequence motif that is characteristic of metallopeptidases. This family may therefore belong to an as yet uncharacterised family of peptidase enzymes.
Probab=21.13 E-value=95 Score=29.55 Aligned_cols=56 Identities=25% Similarity=0.277 Sum_probs=39.5
Q ss_pred cCcceecccCC-CCCHHHHHHHHHHHHHHh-------CCCCCC----CcchHHHHHHHHHHHHHhchh
Q 019721 44 TDYYSTLNVRQ-NATLQEIKTSYRKLARKY-------HPDINK----SPGAEEKFKEISSAYEVLSDD 99 (336)
Q Consensus 44 ~d~Y~iLgv~~-~a~~~eIk~ayr~la~~~-------hPd~~~----~~~~~~~f~~i~~Ay~vL~d~ 99 (336)
.++++.||++. ..+.+|+.+--++++.+. ++|.+. +-...+.|+++.+||+.|.+.
T Consensus 82 ~pl~~~l~l~~~~~~~~eL~~l~~~li~~~N~l~~~i~~~~~~~~~~~~~~~~i~~~~~~~y~~l~~~ 149 (318)
T PF12725_consen 82 PPLSERLGLETEEYSTEELKELTEYLIEKANELREQITEDDNGVVDIPYDKEEIFEEAREGYENLAER 149 (318)
T ss_pred cCHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCccccccCCCCHHHHHHHHHHHHHHHHHh
Confidence 45677889988 789999888777776554 332221 013478899999999999844
No 194
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=21.11 E-value=59 Score=34.66 Aligned_cols=40 Identities=18% Similarity=0.535 Sum_probs=28.3
Q ss_pred eeeCCCCCCCCcc-CCCCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCc
Q 019721 191 FETCDSCGGTGAK-SSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGD 243 (336)
Q Consensus 191 ~~~C~~C~G~G~~-~~~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~ 243 (336)
...|+.|...=.- .....-.|..|+=...+. ..|+.|.+.
T Consensus 444 v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p-------------~~Cp~Cgs~ 484 (730)
T COG1198 444 IAECPNCDSPLTLHKATGQLRCHYCGYQEPIP-------------QSCPECGSE 484 (730)
T ss_pred cccCCCCCcceEEecCCCeeEeCCCCCCCCCC-------------CCCCCCCCC
Confidence 4689999876543 334567899997664321 679999998
No 195
>PRK13798 putative OHCU decarboxylase; Provisional
Probab=20.97 E-value=2.5e+02 Score=24.04 Aligned_cols=26 Identities=27% Similarity=0.307 Sum_probs=17.7
Q ss_pred HHHhCCCCCCC-----------------cchHHHHHHHHHHHH
Q 019721 69 ARKYHPDINKS-----------------PGAEEKFKEISSAYE 94 (336)
Q Consensus 69 a~~~hPd~~~~-----------------~~~~~~f~~i~~Ay~ 94 (336)
++..|||.... +...+.|..+|.+|+
T Consensus 67 ~l~~HP~lg~~~~~~~S~~EQ~gl~~l~~~~~~~l~~lN~~Y~ 109 (166)
T PRK13798 67 ALAGHPRIGERPASKASAREQAGVADADEAVMAALAAGNRAYE 109 (166)
T ss_pred HHHhCCcccCccccccCHHHhcccccCCHHHHHHHHHHHHHHH
Confidence 45679997531 234567888888887
No 196
>smart00143 PI3K_p85B PI3-kinase family, p85-binding domain. Region of p110 PI3K that binds the p85 subunit.
Probab=20.69 E-value=1.1e+02 Score=22.93 Aligned_cols=25 Identities=48% Similarity=0.454 Sum_probs=20.5
Q ss_pred eecccCCCCCHHHHHHHHHHHHHHh
Q 019721 48 STLNVRQNATLQEIKTSYRKLARKY 72 (336)
Q Consensus 48 ~iLgv~~~a~~~eIk~ayr~la~~~ 72 (336)
-.|.++++||..+||.--.+.|+++
T Consensus 2 i~l~v~~~aTl~~IK~~lw~~A~~~ 26 (78)
T smart00143 2 VTLRVLREATLSTIKHELFKQARKM 26 (78)
T ss_pred eeEEccccccHHHHHHHHHHHHHhC
Confidence 4578999999999999877777653
No 197
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=20.63 E-value=98 Score=24.73 Aligned_cols=29 Identities=17% Similarity=0.395 Sum_probs=13.8
Q ss_pred eeeeeCCCCCCCCccCCCCcccCCCCCCcc
Q 019721 189 SCFETCDSCGGTGAKSSNCIQSCKACWGRG 218 (336)
Q Consensus 189 ~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G 218 (336)
+....|..|.-.-.... ....||.|++..
T Consensus 68 p~~~~C~~Cg~~~~~~~-~~~~CP~Cgs~~ 96 (115)
T TIGR00100 68 PVECECEDCSEEVSPEI-DLYRCPKCHGIM 96 (115)
T ss_pred CcEEEcccCCCEEecCC-cCccCcCCcCCC
Confidence 34567888763322211 123455555544
No 198
>PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein. The function of this family is unknown.
Probab=20.50 E-value=78 Score=26.61 Aligned_cols=9 Identities=44% Similarity=1.150 Sum_probs=4.4
Q ss_pred cCCCCCCcc
Q 019721 236 TCSKCGGDG 244 (336)
Q Consensus 236 ~C~~C~G~G 244 (336)
+|+.|+++.
T Consensus 132 ~Cp~C~~~~ 140 (146)
T PF07295_consen 132 PCPKCGHTE 140 (146)
T ss_pred CCCCCCCCe
Confidence 455555443
No 199
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=20.26 E-value=89 Score=19.45 Aligned_cols=9 Identities=33% Similarity=0.837 Sum_probs=4.6
Q ss_pred eeCCCCCCC
Q 019721 192 ETCDSCGGT 200 (336)
Q Consensus 192 ~~C~~C~G~ 200 (336)
+.|+.|+..
T Consensus 3 i~Cp~C~~~ 11 (36)
T PF13717_consen 3 ITCPNCQAK 11 (36)
T ss_pred EECCCCCCE
Confidence 356666443
No 200
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=20.08 E-value=13 Score=33.92 Aligned_cols=59 Identities=36% Similarity=0.567 Sum_probs=43.3
Q ss_pred ccccCcceecccCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhchhcccccccccCCC
Q 019721 41 AAGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEA 111 (336)
Q Consensus 41 ~~~~d~Y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~~~~~~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~ 111 (336)
..+.+||++||+....+.. .+.|+ |.+..+. .+.|..+..+..+|.++ .|..||..+..
T Consensus 95 ~~~~~~~~~~g~~~~~~~~--~~~~~--------~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 153 (306)
T KOG0714|consen 95 KPDKDFYEFFGVSSPFSGS--KKGYR--------DKNAAPG-EEAFKSEGKAFQSLYGP-KRKQYDSSGSD 153 (306)
T ss_pred chhhhHHHHhCCCCCCccc--cccCC--------ccccccC-ccccccccccccccCCC-ccccccccccc
Confidence 3467899999988776655 55555 4444444 56677777889999999 99999987754
Done!