Query 019721
Match_columns 336
No_of_seqs 279 out of 2438
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 06:07:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019721.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019721hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lz8_A Putative chaperone DNAJ 100.0 2.2E-49 7.4E-54 374.3 11.9 223 42-335 26-252 (329)
2 1nlt_A Protein YDJ1, mitochond 100.0 1.1E-40 3.7E-45 303.9 17.0 172 161-335 8-182 (248)
3 3agx_A DNAJ homolog subfamily 99.9 5.4E-26 1.8E-30 197.4 11.3 112 164-335 2-113 (181)
4 2q2g_A HSP40 protein, heat sho 99.9 8.5E-25 2.9E-29 189.8 11.6 111 164-335 3-113 (180)
5 1bq0_A DNAJ, HSP40; chaperone, 99.9 4.6E-25 1.6E-29 174.4 4.0 97 43-139 2-99 (103)
6 1c3g_A Heat shock protein 40; 99.9 3.7E-23 1.3E-27 177.8 10.7 107 165-335 1-107 (170)
7 1hdj_A Human HSP40, HDJ-1; mol 99.9 1.8E-23 6.1E-28 156.5 5.7 72 43-114 2-73 (77)
8 2ctr_A DNAJ homolog subfamily 99.9 6.1E-23 2.1E-27 157.5 4.7 74 42-115 5-78 (88)
9 2cug_A Mkiaa0962 protein; DNAJ 99.9 1.7E-22 6E-27 155.0 5.5 74 39-112 12-85 (88)
10 2ctp_A DNAJ homolog subfamily 99.9 1.3E-22 4.4E-27 152.2 4.5 72 42-113 5-76 (78)
11 2dn9_A DNAJ homolog subfamily 99.9 2.4E-22 8.1E-27 151.1 5.9 72 42-113 5-77 (79)
12 2och_A Hypothetical protein DN 99.9 3.7E-22 1.3E-26 147.7 5.1 70 40-111 4-73 (73)
13 2o37_A Protein SIS1; HSP40, J- 99.8 1.9E-22 6.5E-27 156.0 3.3 74 40-115 4-77 (92)
14 2ej7_A HCG3 gene; HCG3 protein 99.8 4.1E-22 1.4E-26 150.8 5.0 71 43-113 8-80 (82)
15 2ctw_A DNAJ homolog subfamily 99.8 4.7E-22 1.6E-26 158.6 4.0 80 35-114 8-88 (109)
16 2ctq_A DNAJ homolog subfamily 99.8 7.4E-22 2.5E-26 158.2 4.8 75 40-114 16-91 (112)
17 2dmx_A DNAJ homolog subfamily 99.8 1.1E-21 3.8E-26 151.8 5.4 73 43-115 8-82 (92)
18 2lgw_A DNAJ homolog subfamily 99.8 7.4E-22 2.5E-26 154.6 3.7 72 44-115 2-75 (99)
19 2yua_A Williams-beuren syndrom 99.8 2.3E-21 7.9E-26 152.0 4.6 68 41-108 14-82 (99)
20 2ctt_A DNAJ homolog subfamily 99.8 2E-21 6.8E-26 153.7 1.1 102 165-270 2-103 (104)
21 1wjz_A 1700030A21RIK protein; 99.8 1.1E-20 3.6E-25 146.8 3.9 70 41-110 13-89 (94)
22 3apq_A DNAJ homolog subfamily 99.8 3.1E-20 1.1E-24 164.2 5.6 89 44-138 2-91 (210)
23 2ys8_A RAB-related GTP-binding 99.8 4E-20 1.4E-24 142.3 5.1 65 40-104 23-87 (90)
24 2qsa_A DNAJ homolog DNJ-2; J-d 99.8 2.7E-20 9.3E-25 148.4 2.0 71 41-111 12-87 (109)
25 1gh6_A Large T antigen; tumor 99.7 1.7E-19 6E-24 144.3 0.4 65 43-110 7-73 (114)
26 2l6l_A DNAJ homolog subfamily 99.7 9.3E-19 3.2E-23 148.2 4.3 70 41-110 7-83 (155)
27 1iur_A KIAA0730 protein; DNAJ 99.7 1.3E-18 4.5E-23 132.9 3.7 68 37-104 9-78 (88)
28 1faf_A Large T antigen; J doma 99.7 1.6E-18 5.6E-23 129.9 4.0 66 43-112 10-77 (79)
29 2pf4_E Small T antigen; PP2A, 99.7 2.3E-19 7.7E-24 153.4 -1.1 66 42-110 9-76 (174)
30 1n4c_A Auxilin; four helix bun 99.7 1.6E-17 5.5E-22 142.7 4.9 62 44-105 117-182 (182)
31 3hho_A CO-chaperone protein HS 99.7 1.3E-17 4.5E-22 143.5 4.1 67 42-108 2-76 (174)
32 2qwo_B Putative tyrosine-prote 99.7 2.1E-17 7.1E-22 126.8 3.5 55 44-98 33-91 (92)
33 3apo_A DNAJ homolog subfamily 99.7 6.8E-18 2.3E-22 176.4 -0.4 79 38-116 15-94 (780)
34 3ag7_A Putative uncharacterize 99.6 3.3E-17 1.1E-21 129.5 2.8 59 42-101 39-105 (106)
35 2guz_A Mitochondrial import in 99.6 7.1E-17 2.4E-21 118.5 3.7 58 43-103 13-71 (71)
36 3bvo_A CO-chaperone protein HS 99.6 7E-17 2.4E-21 142.5 4.1 66 42-107 41-114 (207)
37 1fpo_A HSC20, chaperone protei 99.6 5.7E-17 1.9E-21 139.1 3.1 65 45-109 2-74 (171)
38 3uo3_A J-type CO-chaperone JAC 99.6 1.9E-16 6.4E-21 136.9 1.9 64 43-108 10-80 (181)
39 1nlt_A Protein YDJ1, mitochond 99.5 1.3E-14 4.5E-19 131.7 6.1 117 192-318 55-247 (248)
40 1exk_A DNAJ protein; extended 99.4 5.6E-14 1.9E-18 105.1 3.9 78 181-262 1-78 (79)
41 3i38_A Putative chaperone DNAJ 99.3 5E-13 1.7E-17 106.0 4.5 86 161-321 8-93 (109)
42 1xao_A YDJ1, mitochondrial pro 99.3 1.7E-12 5.7E-17 105.0 4.7 88 162-321 4-95 (121)
43 2q2g_A HSP40 protein, heat sho 99.1 7.3E-11 2.5E-15 101.9 5.3 87 161-319 89-176 (180)
44 3agx_A DNAJ homolog subfamily 99.1 8.1E-11 2.8E-15 101.7 5.2 87 161-319 89-176 (181)
45 2y4t_A DNAJ homolog subfamily 99.0 1.1E-10 3.8E-15 111.6 4.9 65 43-107 381-449 (450)
46 1c3g_A Heat shock protein 40; 99.0 1.4E-10 4.9E-15 99.2 4.7 86 161-318 83-169 (170)
47 3lz8_A Putative chaperone DNAJ 98.9 5.7E-10 1.9E-14 105.0 4.5 86 161-321 228-313 (329)
48 2guz_B Mitochondrial import in 98.8 2.3E-09 8E-14 76.5 3.9 52 45-99 5-59 (65)
49 2ctt_A DNAJ homolog subfamily 97.7 9.8E-06 3.4E-10 63.2 1.6 46 191-248 45-95 (104)
50 1exk_A DNAJ protein; extended 97.7 1.1E-05 3.6E-10 59.6 1.3 45 191-247 28-77 (79)
51 3pmq_A Decaheme cytochrome C M 97.4 4.5E-06 1.5E-10 84.7 -4.7 78 168-245 168-257 (669)
52 2bx9_A Anti-trap, AT, tryptoph 97.4 2.1E-05 7E-10 53.5 -0.4 38 191-231 9-47 (53)
53 3lcz_A YCZA, inhibitor of trap 97.1 0.00014 4.7E-09 49.4 1.0 28 235-262 10-37 (53)
54 3lcz_A YCZA, inhibitor of trap 97.0 0.00019 6.4E-09 48.7 1.4 25 192-219 10-34 (53)
55 2bx9_A Anti-trap, AT, tryptoph 96.8 0.00038 1.3E-08 47.2 1.4 28 208-247 9-36 (53)
56 2pzi_A Probable serine/threoni 91.8 0.092 3.2E-06 53.4 3.6 49 40-95 625-675 (681)
57 2qkd_A Zinc finger protein ZPR 46.7 25 0.00086 33.3 5.4 19 266-284 302-320 (404)
58 2qkd_A Zinc finger protein ZPR 45.5 35 0.0012 32.3 6.3 78 207-284 11-112 (404)
59 1uzc_A Hypothetical protein FL 34.1 16 0.00055 25.7 1.5 53 54-108 10-65 (71)
60 3nyb_B Protein AIR2; polya RNA 32.5 26 0.00089 25.3 2.4 53 191-247 5-59 (83)
61 2cqn_A Formin-binding protein 32.5 28 0.00096 24.8 2.6 53 56-109 6-62 (77)
62 1ltl_A DNA replication initiat 31.5 52 0.0018 29.2 4.8 33 209-245 135-167 (279)
63 1ltl_A DNA replication initiat 30.2 2.3E+02 0.008 24.8 9.0 30 191-220 134-168 (279)
64 3u5e_X 60S ribosomal protein L 25.8 52 0.0018 26.4 3.3 10 42-51 55-64 (142)
65 1qyp_A RNA polymerase II; tran 25.3 67 0.0023 21.0 3.3 15 209-223 16-30 (57)
66 1tfi_A Transcriptional elongat 24.0 91 0.0031 20.1 3.7 34 208-241 9-44 (50)
67 2b7e_A PRE-mRNA processing pro 23.7 45 0.0015 22.5 2.2 48 59-108 3-55 (59)
68 3iz5_X 60S ribosomal protein L 20.1 62 0.0021 26.2 2.7 11 42-52 65-75 (152)
No 1
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A
Probab=100.00 E-value=2.2e-49 Score=374.29 Aligned_cols=223 Identities=29% Similarity=0.477 Sum_probs=98.4
Q ss_pred cccCcceecccCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhchhcccccccccCCCCcCCcccCC-
Q 019721 42 AGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGL- 120 (336)
Q Consensus 42 ~~~d~Y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~~~~~~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~g~~~~~~~~- 120 (336)
..+|||++|||+++||.+|||+|||+||++||||+++++.++++|++|++||++|+||.+|+.||+|+..+...++.+.
T Consensus 26 ~~~d~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~~~~~~~~~~~ 105 (329)
T 3lz8_A 26 ELKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAEAKFKDLAEAWEVLKDEQRRAEYDQLWQHRNDPGFGRQR 105 (329)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccCHHHHcCcCCCCCHHHHHHHHHHHHHHHCCCCCCChHHHHHHHHHHHHHHHhhhhhhhcccchhhccccCCCccccc
Confidence 4589999999999999999999999999999999998888999999999999999999999999999644321111110
Q ss_pred ---CCCCCCCCchhhhccccCCCCCCCCCCCCCCCcccccCCCCCCCcceEEEEeecceeeeeceEEEEEeeeeeeCCCC
Q 019721 121 ---SNTSQGVDPFELYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSC 197 (336)
Q Consensus 121 ---~~~~~~~d~~~~f~~ffg~~~~~fg~~g~~~~~~~~~~~~~~~g~di~~~l~vslee~~~G~~~~v~~~~~~~C~~C 197 (336)
++++.+.+..++|++|||++ ++ .++ .....++.|+.++|.|||+|+|+|+++++.+++.+.|
T Consensus 106 ~~~~~~f~~~~f~diF~~~Fg~~----g~---~~~-----~~~~~~g~Dl~~~l~vsleea~~G~~k~i~i~~~v~~--- 170 (329)
T 3lz8_A 106 QTHEQSYSQQDFDDIFSSMFGQQ----AH---QRR-----RQHAARGHDLEIEVAVFLEETLAEQTRTISYNLPVYN--- 170 (329)
T ss_dssp -------------------------------------------CCCCCCEEEEECCCTTGGGSCEEEEEEEEEEECC---
T ss_pred ccccCCcCCCchhhhhHhhhcCc----CC---CCC-----CCCcCCCCCEEEEEecchhhhhhccceEEEEEEEeec---
Confidence 11111224457788887642 10 000 1124578999999999999999999999999875532
Q ss_pred CCCCccCCCCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCcceEEeeeeeecCCceEEeeeeEEEEEeCCCCCCC
Q 019721 198 GGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNG 277 (336)
Q Consensus 198 ~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~~~~~~~l~V~Ip~G~~~G 277 (336)
|.|.+ .+...++++|+||||+++|
T Consensus 171 ------------------g~G~v--------------------------------------~~~~~~~l~V~IP~Gv~~G 194 (329)
T 3lz8_A 171 ------------------VFGMI--------------------------------------ESETPKTLNVKIPAGVVDG 194 (329)
T ss_dssp ------------------SCC-C--------------------------------------CEEEEEEEEEEECTTCCTT
T ss_pred ------------------CCeEE--------------------------------------EEecceEEEEeCCCCCCCC
Confidence 11111 1223568999999999999
Q ss_pred cEEEEccCCCCCCCCCCCccEEEEEEEecCCCccccccceeeecccChhhhhcCceec
Q 019721 278 ATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSME 335 (336)
Q Consensus 278 ~~i~l~G~G~~~~~~g~~GDL~v~i~v~~~~~f~r~g~dL~~~~~I~l~eALlG~~~~ 335 (336)
++|+|+|+|+++..++.+|||||+|+|++|+.|+|+|+||+++++|+|+|||||++++
T Consensus 195 ~~Irl~G~G~~g~~gg~~GDL~v~I~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~v~ 252 (329)
T 3lz8_A 195 QRIRLKGQGTPGENGGPNGDLWLVIHIAPHPLFDIVGHNLEIVLPLAPWEAALGAKVT 252 (329)
T ss_dssp CEEEESSCSCCC---CCCCCEEEEECCCCCSSCEEETTEEEEEEEECHHHHHHCEEEE
T ss_pred CEEEEcccccCCCCCCCCCcEEEEEEEecCCccEEcCCcEEEEEECCHHHHcCCCeEE
Confidence 9999999999977778899999999999999999999999999999999999999875
No 2
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1
Probab=100.00 E-value=1.1e-40 Score=303.86 Aligned_cols=172 Identities=26% Similarity=0.531 Sum_probs=160.5
Q ss_pred CCCCcceEEEEeecceeeeeceEEEEEeeeeeeCCCCCCCCccCCCCcccCCCCCCccEEEEeeecCCcce-eeeecCCC
Q 019721 161 GNFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLI-SQVSTCSK 239 (336)
Q Consensus 161 ~~~g~di~~~l~vslee~~~G~~~~v~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~-~~~~~C~~ 239 (336)
+.++.|+.++|.|||+|||+|+++++.+++.+.|+.|+|+|..... ..+|+.|+|+|.++..+++++ ++ +...+|+.
T Consensus 8 ~~~g~d~~~~l~vslee~~~G~~k~i~~~r~~~C~~C~G~G~~~g~-~~~C~~C~G~G~~~~~~~~g~-~~~~~~~~C~~ 85 (248)
T 1nlt_A 8 PQRGKDIKHEISASLEELYKGRTAKLALNKQILCKECEGRGGKKGA-VKKCTSCNGQGIKFVTRQMGP-MIQRFQTECDV 85 (248)
T ss_dssp CCBCCCEEEEEEECTTHHHHCEEEEEEEEEEEECTTTTTCSBSTTT-CCCCTTSSSSSCEEEEEESSS-EEEEEECSCTT
T ss_pred CCCCCCEEEEEEecHHHhcCCceEEEEeeEEEeCCCCcCccCCCCC-CccCCCCCCCcEEEEEEecCc-eEEEEEEcCCC
Confidence 4578999999999999999999999999999999999999999887 499999999999988887777 44 44589999
Q ss_pred CCCcceEE--eeeeeecCCceEEeeeeEEEEEeCCCCCCCcEEEEccCCCCCCCCCCCccEEEEEEEecCCCccccccce
Q 019721 240 CGGDGKII--IDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNL 317 (336)
Q Consensus 240 C~G~G~~~--~~~C~~C~g~g~~~~~~~l~V~Ip~G~~~G~~i~l~G~G~~~~~~g~~GDL~v~i~v~~~~~f~r~g~dL 317 (336)
|+|+|+++ .+.|+.|+|.+.+.+.++++|+|||||++|++|+|+|+|++. +++.+|||||+|++++|+.|+|+|+||
T Consensus 86 C~G~G~~i~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~ir~~g~G~~~-~~g~~GDl~v~i~v~~h~~F~R~G~DL 164 (248)
T 1nlt_A 86 CHGTGDIIDPKDRCKSCNGKKVENERKILEVHVEPGMKDGQRIVFKGEADQA-PDVIPGDVVFIVSERPHKSFKRDGDDL 164 (248)
T ss_dssp CSSSSSCCCTTSBCSSSTTSCEEEEEEEEEEEECTTCCTTCEEEETTCSCCC-TTCBCCCEEEEEEECCCSSCEEETTEE
T ss_pred CCCcCEEeccCCCCcccCCCceEeeeEEEEEEECCCccCCCEEEEeeeecCC-CCCCcceEEEEEEEecCccceeeCCEE
Confidence 99999999 899999999999999999999999999999999999999986 456899999999999999999999999
Q ss_pred eeecccChhhhhcCceec
Q 019721 318 FSKISVDYTEAILGTSME 335 (336)
Q Consensus 318 ~~~~~I~l~eALlG~~~~ 335 (336)
|++++|+|+|||||++++
T Consensus 165 ~~~~~Isl~eAllG~~i~ 182 (248)
T 1nlt_A 165 VYEAEIDLLTAIAGGEFA 182 (248)
T ss_dssp EEEEEEEHHHHHHCBCCE
T ss_pred EEEEEeCHHHHhcCCEEE
Confidence 999999999999999875
No 3
>3agx_A DNAJ homolog subfamily B member 1; chaperone; 1.85A {Homo sapiens} PDB: 3agy_A 3agz_A 2qld_A
Probab=99.93 E-value=5.4e-26 Score=197.42 Aligned_cols=112 Identities=18% Similarity=0.317 Sum_probs=94.8
Q ss_pred CcceEEEEeecceeeeeceEEEEEeeeeeeCCCCCCCCccCCCCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCc
Q 019721 164 GLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGD 243 (336)
Q Consensus 164 g~di~~~l~vslee~~~G~~~~v~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~ 243 (336)
+.|+.++|.|||+|+|+|+++++.+.+
T Consensus 2 ~~d~~~~l~islee~~~G~~k~i~i~~----------------------------------------------------- 28 (181)
T 3agx_A 2 DPPVTHDLRVSLEEIYSGCTKKMKISH----------------------------------------------------- 28 (181)
T ss_dssp ----CEEEEECHHHHHHCEEEEEEEEE-----------------------------------------------------
T ss_pred CCCEEEEEEEEHHHhcCCcEEEEEEec-----------------------------------------------------
Confidence 368899999999999999999987653
Q ss_pred ceEEeeeeeecCCceEEeeeeEEEEEeCCCCCCCcEEEEccCCCCCCCCCCCccEEEEEEEecCCCccccccceeeeccc
Q 019721 244 GKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISV 323 (336)
Q Consensus 244 G~~~~~~C~~C~g~g~~~~~~~l~V~Ip~G~~~G~~i~l~G~G~~~~~~g~~GDL~v~i~v~~~~~f~r~g~dL~~~~~I 323 (336)
.|..|+|.+.+...++++|+||||+++|++|+|+|+|+++. ++.+|||||+|++++|+.|+|+|+||+++++|
T Consensus 29 ------~c~~c~G~g~~~~~~~l~V~Ip~G~~~G~~ir~~G~G~~~~-~g~~GDl~v~i~~~~h~~F~R~G~DL~~~~~I 101 (181)
T 3agx_A 29 ------KRLNPDGKSIRNEDKILTIEVKKGWKEGTKITFPKEGDQTS-NNIPADIVFVLKDKPHNIFKRDGSDVIYPARI 101 (181)
T ss_dssp ------EEECTTSSCEEEEEEEEEEEECTTCCTTCEEEETTCSCCCS-SSCCCCEEEEEEECCCSSCEEETTEEEEEEEE
T ss_pred ------ccCCCCCceEEEEeEEEEEEECCCccCCcEEEEeeccccCC-CCCcccEEEEEEEeccccceeeCCcEEEEEEc
Confidence 13333344445567899999999999999999999999865 67899999999999999999999999999999
Q ss_pred ChhhhhcCceec
Q 019721 324 DYTEAILGTSME 335 (336)
Q Consensus 324 ~l~eALlG~~~~ 335 (336)
+|+|||||++++
T Consensus 102 sl~eAllG~~i~ 113 (181)
T 3agx_A 102 SLREALCGCTVN 113 (181)
T ss_dssp EHHHHHHCEEEE
T ss_pred CHHHHhCCCEEE
Confidence 999999999875
No 4
>2q2g_A HSP40 protein, heat shock 40 kDa protein, putative (fragment); malaria, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum iowa II}
Probab=99.92 E-value=8.5e-25 Score=189.75 Aligned_cols=111 Identities=21% Similarity=0.348 Sum_probs=100.4
Q ss_pred CcceEEEEeecceeeeeceEEEEEeeeeeeCCCCCCCCccCCCCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCc
Q 019721 164 GLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGD 243 (336)
Q Consensus 164 g~di~~~l~vslee~~~G~~~~v~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~ 243 (336)
+.|+.++|.|||+|+|+|+++++.+.+.+.|+.
T Consensus 3 g~d~~~~l~islee~~~G~~k~i~~~~~~~c~~----------------------------------------------- 35 (180)
T 2q2g_A 3 PRSHEVPLLVTLEELYLGKRKKIKVTRKRFIEH----------------------------------------------- 35 (180)
T ss_dssp -CEEEEEEEECHHHHHHCEEEEEEEEEEEEETT-----------------------------------------------
T ss_pred CCCEEEEEEeeHHHhcCCcEEEEEEeEEEecCC-----------------------------------------------
Confidence 679999999999999999999999998877741
Q ss_pred ceEEeeeeeecCCceEEeeeeEEEEEeCCCCCCCcEEEEccCCCCCCCCCCCccEEEEEEEecCCCccccccceeeeccc
Q 019721 244 GKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISV 323 (336)
Q Consensus 244 G~~~~~~C~~C~g~g~~~~~~~l~V~Ip~G~~~G~~i~l~G~G~~~~~~g~~GDL~v~i~v~~~~~f~r~g~dL~~~~~I 323 (336)
+.+...++++|.|||||++|++|+|+|+|+++.+++.+|||||+|++++|+.|+|+|+||+++++|
T Consensus 36 --------------g~~~~~~~l~V~Ip~G~~~G~~ir~~g~G~~g~~gg~~GDl~v~i~~~~h~~F~R~G~DL~~~~~I 101 (180)
T 2q2g_A 36 --------------KVRNEENIVEVEIKPGWKDGTKLTYSGEGDQESPGTSPGDLVLIIQTKTHPRFTRDDCHLIMKVTI 101 (180)
T ss_dssp --------------EEEEEEEEEEEEECTTCCTTCEEEETTCSCCSSTTSCCCEEEEEEEECCCSSCEEETTEEEEEEEE
T ss_pred --------------ceEEeeEEEEEEECCCCcCCcEEEEeeccCCCCCCCccccEEEEEEEEecccEEEcCCEEEEEEEc
Confidence 233456889999999999999999999999866688999999999999999999999999999999
Q ss_pred ChhhhhcCceec
Q 019721 324 DYTEAILGTSME 335 (336)
Q Consensus 324 ~l~eALlG~~~~ 335 (336)
+|+|||||++++
T Consensus 102 sl~eAllG~~i~ 113 (180)
T 2q2g_A 102 PLVRALTGFTCP 113 (180)
T ss_dssp EHHHHHHCEEEE
T ss_pred CHHHHhCCCEEE
Confidence 999999999874
No 5
>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A
Probab=99.90 E-value=4.6e-25 Score=174.42 Aligned_cols=97 Identities=42% Similarity=0.710 Sum_probs=69.7
Q ss_pred ccCcceecccCCCCCHHHHHHHHHHHHHHhCCCCCC-CcchHHHHHHHHHHHHHhchhcccccccccCCCCcCCcccCCC
Q 019721 43 GTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINK-SPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLS 121 (336)
Q Consensus 43 ~~d~Y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~-~~~~~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~g~~~~~~~~~ 121 (336)
..|||+||||+++|+.+|||+|||+|+++||||+++ ++.+.++|++|++||++|+||.+|+.||++|++++..+..+++
T Consensus 2 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~~~~~~~~~ 81 (103)
T 1bq0_A 2 KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHAAFEQGGMGGG 81 (103)
T ss_dssp CCCSTTTTSSCSSCCHHHHHHHHHHHHTTTCTTTCTTTCTHHHHHHHHTTTTTSTTCSHHHHHTTTSTTTSSCSCC----
T ss_pred CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHHhhhhhcccCcCCC
Confidence 579999999999999999999999999999999998 4778999999999999999999999999999988764321111
Q ss_pred CCCCCCCchhhhccccCC
Q 019721 122 NTSQGVDPFELYSAFFGG 139 (336)
Q Consensus 122 ~~~~~~d~~~~f~~ffg~ 139 (336)
+...+.+..++|+.||+.
T Consensus 82 ~~~~~~~~~~~f~~~f~~ 99 (103)
T 1bq0_A 82 GFGGGADFSDIFGDVFGD 99 (103)
T ss_dssp ------------------
T ss_pred CCCCCCCHHHHHHHHHHh
Confidence 111123445667777754
No 6
>1c3g_A Heat shock protein 40; beta sheets, short helices, chaperone; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 PDB: 2b26_A
Probab=99.89 E-value=3.7e-23 Score=177.85 Aligned_cols=107 Identities=18% Similarity=0.405 Sum_probs=95.3
Q ss_pred cceEEEEeecceeeeeceEEEEEeeeeeeCCCCCCCCccCCCCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCcc
Q 019721 165 LDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDG 244 (336)
Q Consensus 165 ~di~~~l~vslee~~~G~~~~v~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G 244 (336)
.|+.++|.|||+|||+|+++++.+.+.. + .|
T Consensus 1 ~d~~~~l~islee~~~G~~k~i~~~~~~----~-------------------~G-------------------------- 31 (170)
T 1c3g_A 1 ETVQVNLPVSLEDLFVGKKKSFKIGRKG----P-------------------HG-------------------------- 31 (170)
T ss_dssp CEEEEEEEECHHHHHHTCEEEEEEEEEE----T-------------------TT--------------------------
T ss_pred CCEEEEEEeEHHHhhCCcEEEEEEEEec----C-------------------CC--------------------------
Confidence 3789999999999999999999987641 0 01
Q ss_pred eEEeeeeeecCCceEEeeeeEEEEEeCCCCCCCcEEEEccCCCCCCCCCCCccEEEEEEEecCCCccccccceeeecccC
Q 019721 245 KIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVD 324 (336)
Q Consensus 245 ~~~~~~C~~C~g~g~~~~~~~l~V~Ip~G~~~G~~i~l~G~G~~~~~~g~~GDL~v~i~v~~~~~f~r~g~dL~~~~~I~ 324 (336)
.+ ..++++|+||||+++|++|+|+|+|++..+++.+|||||+|++++|+.|+|+|+||+++++|+
T Consensus 32 --------------~~-~~~~l~V~Ip~G~~~G~~ir~~g~G~~~~~gg~~GDl~v~i~v~~h~~F~R~G~DL~~~~~Is 96 (170)
T 1c3g_A 32 --------------AS-EKTQIDIQLKPGWKAGTKITYKNQGDYNPQTGRRKTLQFVIQEKSHPNFKRDGDDLIYTLPLS 96 (170)
T ss_dssp --------------EE-EEEEEEEECCTTCCTTCEEEESSCSSBCSSSSCBCEEEEEEEECCCSSEEEETTEEEEEECCB
T ss_pred --------------cE-EeEEEEEEeCCCccCCCEEEEeccccCCCCCCccccEEEEEEEccCCccEEeCCcEeEEEEcC
Confidence 12 467899999999999999999999998778889999999999999999999999999999999
Q ss_pred hhhhhcCceec
Q 019721 325 YTEAILGTSME 335 (336)
Q Consensus 325 l~eALlG~~~~ 335 (336)
|+|||||++++
T Consensus 97 l~eAllG~~~~ 107 (170)
T 1c3g_A 97 FKESLLGFSKT 107 (170)
T ss_dssp HHHHHHCEEEE
T ss_pred HHHHhCCCeEE
Confidence 99999999874
No 7
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.88 E-value=1.8e-23 Score=156.52 Aligned_cols=72 Identities=58% Similarity=1.025 Sum_probs=69.1
Q ss_pred ccCcceecccCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhchhcccccccccCCCCcC
Q 019721 43 GTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGIT 114 (336)
Q Consensus 43 ~~d~Y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~~~~~~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~g~~ 114 (336)
..|||+||||+++|+.+|||+|||+|+++||||+++++.+.+.|++|++||++|+||.+|+.||++|.+++.
T Consensus 2 ~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~ 73 (77)
T 1hdj_A 2 GKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREIFDRYGEEGLK 73 (77)
T ss_dssp CCCSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCCTTHHHHHHHHHHHHHHTTCHHHHHHHHHTCGGGCC
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCHHHHHHHHHHcccccc
Confidence 579999999999999999999999999999999998888999999999999999999999999999988765
No 8
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.87 E-value=6.1e-23 Score=157.53 Aligned_cols=74 Identities=49% Similarity=0.818 Sum_probs=69.5
Q ss_pred cccCcceecccCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhchhcccccccccCCCCcCC
Q 019721 42 AGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITG 115 (336)
Q Consensus 42 ~~~d~Y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~~~~~~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~g~~~ 115 (336)
...|||+||||+++|+.+|||+|||+|+++||||+++++.+.++|++|++||++|+||.+|+.||.+|.+++..
T Consensus 5 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~~ 78 (88)
T 2ctr_A 5 SSGSYYDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDANRRKEYDTLGHSAFTS 78 (88)
T ss_dssp CCCSHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCCSHHHHHHHHHHHHHHHHHHSSHHHHHHHHTCHHHHTC
T ss_pred CCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCChHHHHHHHHHHHHHHHHCCHHHHHHHHHhCcccccc
Confidence 45799999999999999999999999999999999988889999999999999999999999999999876653
No 9
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}
Probab=99.86 E-value=1.7e-22 Score=154.99 Aligned_cols=74 Identities=49% Similarity=0.850 Sum_probs=69.2
Q ss_pred ccccccCcceecccCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhchhcccccccccCCCC
Q 019721 39 IRAAGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAG 112 (336)
Q Consensus 39 ~~~~~~d~Y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~~~~~~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~g 112 (336)
+.....|||+||||+++|+.+|||+|||+|+++||||+++++.+.++|++|++||++|+||.+|+.||++|+.+
T Consensus 12 ~~~~~~d~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~ 85 (88)
T 2cug_A 12 LSALDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQISKAYEILSNEEKRTNYDHYGSGP 85 (88)
T ss_dssp CCSSSSCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCCSTTHHHHHHHHHHHHHHHHSHHHHHHHHHHTTCC
T ss_pred hccCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHHCCHHHHHHHHHcCCCC
Confidence 34457899999999999999999999999999999999988889999999999999999999999999999764
No 10
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=1.3e-22 Score=152.18 Aligned_cols=72 Identities=49% Similarity=0.846 Sum_probs=68.1
Q ss_pred cccCcceecccCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhchhcccccccccCCCCc
Q 019721 42 AGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGI 113 (336)
Q Consensus 42 ~~~d~Y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~~~~~~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~g~ 113 (336)
...|||+||||+++|+.+|||+|||+|+++||||+++.+.+.++|++|++||++|+||.+|+.||++|.++.
T Consensus 5 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~ 76 (78)
T 2ctp_A 5 SSGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEKRKQYDQFGSGPS 76 (78)
T ss_dssp CSCCHHHHHTCCTTCCHHHHHHHHHHHHTTSCTTTCSSHHHHHHHHHHHHHHHHHTSHHHHHHHHHTCSCSC
T ss_pred CCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCHHHHHHHHHcCcccc
Confidence 457999999999999999999999999999999999888899999999999999999999999999997653
No 11
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.86 E-value=2.4e-22 Score=151.12 Aligned_cols=72 Identities=51% Similarity=0.866 Sum_probs=67.3
Q ss_pred cccCcceecccCCCCCHHHHHHHHHHHHHHhCCCCCC-CcchHHHHHHHHHHHHHhchhcccccccccCCCCc
Q 019721 42 AGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINK-SPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGI 113 (336)
Q Consensus 42 ~~~d~Y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~-~~~~~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~g~ 113 (336)
...|||+||||+++|+.+|||+|||+|+++||||+++ ++.+.++|++|++||++|+||.+|+.||++|..+.
T Consensus 5 ~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~~ 77 (79)
T 2dn9_A 5 SSGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRKQYDAYGSGPS 77 (79)
T ss_dssp CCSCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCSSCTTHHHHHHHHHHHHHHHHSHHHHHHHHHSCCCCS
T ss_pred CCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhccCcCC
Confidence 4679999999999999999999999999999999997 57889999999999999999999999999997653
No 12
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Probab=99.85 E-value=3.7e-22 Score=147.74 Aligned_cols=70 Identities=50% Similarity=0.823 Sum_probs=62.6
Q ss_pred cccccCcceecccCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhchhcccccccccCCC
Q 019721 40 RAAGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEA 111 (336)
Q Consensus 40 ~~~~~d~Y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~~~~~~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~ 111 (336)
|....|||+||||+++|+.++||+|||+|+++||||+++. +.++|++|++||++|+||.+|+.||++|++
T Consensus 4 m~~~~~~y~iLgl~~~a~~~eIk~ayr~l~~~~HPD~~~~--~~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~ 73 (73)
T 2och_A 4 MVKETGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPD--GAEQFKQISQAYEVLSDEKKRQIYDQGGEE 73 (73)
T ss_dssp --CCCCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCTT--CHHHHHHHHHHHHHHTSHHHHHHHHHTC--
T ss_pred ccCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCcC--HHHHHHHHHHHHHHHCCHHHHHHHHhcCCC
Confidence 4567899999999999999999999999999999999853 468999999999999999999999999864
No 13
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}
Probab=99.85 E-value=1.9e-22 Score=156.04 Aligned_cols=74 Identities=45% Similarity=0.700 Sum_probs=67.3
Q ss_pred cccccCcceecccCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhchhcccccccccCCCCcCC
Q 019721 40 RAAGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITG 115 (336)
Q Consensus 40 ~~~~~d~Y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~~~~~~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~g~~~ 115 (336)
|.+..|||+||||+++|+.+|||+|||+|+++||||+++. ..++|++|++||++|+||.+|+.||++|++++..
T Consensus 4 m~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~--~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~~~ 77 (92)
T 2o37_A 4 MVKETKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTG--DTEKFKEISEAFEILNDPQKREIYDQYGLEAARS 77 (92)
T ss_dssp CCSCCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTSTTC--CHHHHHHHHHHHHHHTSHHHHHHHHHHCHHHHHT
T ss_pred cccCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC--hHHHHHHHHHHHHHHCCHHHHHHHHHHCHHHhhc
Confidence 3467899999999999999999999999999999999853 4679999999999999999999999999887653
No 14
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=4.1e-22 Score=150.84 Aligned_cols=71 Identities=49% Similarity=0.831 Sum_probs=66.2
Q ss_pred ccCcceecccCCCCCHHHHHHHHHHHHHHhCCCCCCCc--chHHHHHHHHHHHHHhchhcccccccccCCCCc
Q 019721 43 GTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSP--GAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGI 113 (336)
Q Consensus 43 ~~d~Y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~~~--~~~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~g~ 113 (336)
..|||+||||+++|+.+|||+|||+|+++||||+++.. .+.++|++|++||++|+||.+|+.||++|+.++
T Consensus 8 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~~ 80 (82)
T 2ej7_A 8 MVDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKRDIYDRYGSGPS 80 (82)
T ss_dssp SCCHHHHTTCCTTCCHHHHHHHHHHHHTTSCTTTCSTTHHHHHHHHHHHHHHHHHHSSTTHHHHHHHTCCCSC
T ss_pred CcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHHCCHHHHHHHHHcCcccc
Confidence 46999999999999999999999999999999998753 578899999999999999999999999998765
No 15
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.84 E-value=4.7e-22 Score=158.58 Aligned_cols=80 Identities=46% Similarity=0.809 Sum_probs=72.1
Q ss_pred ccccccccccCcceecccCCCCCHHHHHHHHHHHHHHhCCCCCC-CcchHHHHHHHHHHHHHhchhcccccccccCCCCc
Q 019721 35 RRGMIRAAGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINK-SPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGI 113 (336)
Q Consensus 35 ~~~~~~~~~~d~Y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~-~~~~~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~g~ 113 (336)
+...+.+...|||+||||+++|+.+|||+|||+|+++||||+++ ++.+.++|++|++||++|+||.+|+.||++|..++
T Consensus 8 ~~r~~~~~~~~~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~g~~~~ 87 (109)
T 2ctw_A 8 RQRSLSTSGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRNIYDKYGSLGL 87 (109)
T ss_dssp CCCCTTSCSCCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTSTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHTCHHHH
T ss_pred CCcccCCCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHhccccc
Confidence 33445567789999999999999999999999999999999997 46789999999999999999999999999998765
Q ss_pred C
Q 019721 114 T 114 (336)
Q Consensus 114 ~ 114 (336)
.
T Consensus 88 ~ 88 (109)
T 2ctw_A 88 Y 88 (109)
T ss_dssp H
T ss_pred c
Confidence 3
No 16
>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=7.4e-22 Score=158.25 Aligned_cols=75 Identities=27% Similarity=0.548 Sum_probs=69.7
Q ss_pred cccccCcceecccCCCCCHHHHHHHHHHHHHHhCCCCCC-CcchHHHHHHHHHHHHHhchhcccccccccCCCCcC
Q 019721 40 RAAGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINK-SPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGIT 114 (336)
Q Consensus 40 ~~~~~d~Y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~-~~~~~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~g~~ 114 (336)
++...|||+||||+++|+.+|||+|||+|+++||||+++ ++.+.++|++|++||++|+||.+|+.||++|.+++.
T Consensus 16 ~~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~~~~ 91 (112)
T 2ctq_A 16 SEDTEDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRARYDHWRRSQMS 91 (112)
T ss_dssp CCCCCCHHHHTTCCTTSCHHHHHHHHHHHHHTTCTTTCTTCSTHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHTCS
T ss_pred ccCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHhhhhccC
Confidence 345689999999999999999999999999999999998 678999999999999999999999999999987654
No 17
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=1.1e-21 Score=151.76 Aligned_cols=73 Identities=49% Similarity=0.760 Sum_probs=67.3
Q ss_pred ccCcceecccCCCCCHHHHHHHHHHHHHHhCCCCCCCc--chHHHHHHHHHHHHHhchhcccccccccCCCCcCC
Q 019721 43 GTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSP--GAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITG 115 (336)
Q Consensus 43 ~~d~Y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~~~--~~~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~g~~~ 115 (336)
..|||+||||+++|+.+|||+|||+|+++||||+++.. .+.++|++|++||++|+||.+|+.||++|.+++..
T Consensus 8 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~~ 82 (92)
T 2dmx_A 8 MANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKRSLYDRAGCDSWRA 82 (92)
T ss_dssp CCCHHHHHTCCTTCCTTHHHHHHHHHHHHTCTTTCSSCSHHHHHHHHHHHHHHHHHHSHHHHHHHHHHCSCSSCC
T ss_pred CcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCcccccC
Confidence 46999999999999999999999999999999998743 67899999999999999999999999999887653
No 18
>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}
Probab=99.84 E-value=7.4e-22 Score=154.63 Aligned_cols=72 Identities=50% Similarity=0.886 Sum_probs=64.3
Q ss_pred cCcceecccCCCCCHHHHHHHHHHHHHHhCCCCCCCc--chHHHHHHHHHHHHHhchhcccccccccCCCCcCC
Q 019721 44 TDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSP--GAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITG 115 (336)
Q Consensus 44 ~d~Y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~~~--~~~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~g~~~ 115 (336)
.|||+||||+++|+.+|||+|||+|+++||||+++.. .+.++|++|++||++|+||.+|+.||.+|.+++.+
T Consensus 2 ~d~Y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~~a~~~f~~I~~AY~vL~d~~~R~~YD~~g~~~~~~ 75 (99)
T 2lgw_A 2 ASYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKREIYDRYGREGLTG 75 (99)
T ss_dssp CCHHHHSSSCTTSCHHHHHHHHHHHHHHTSTTTCCSCCHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHC----
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCcccccC
Confidence 5999999999999999999999999999999998753 47899999999999999999999999999887653
No 19
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=2.3e-21 Score=151.98 Aligned_cols=68 Identities=41% Similarity=0.547 Sum_probs=64.0
Q ss_pred ccccCcceecccCCCCCHHHHHHHHHHHHHHhCCCCCC-CcchHHHHHHHHHHHHHhchhccccccccc
Q 019721 41 AAGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINK-SPGAEEKFKEISSAYEVLSDDEKRSVYDRF 108 (336)
Q Consensus 41 ~~~~d~Y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~-~~~~~~~f~~i~~Ay~vL~d~~~r~~YD~~ 108 (336)
+...|||+||||+++|+.+|||+|||+|+++||||+++ ++.+.++|++|++||++|+||.+|+.||++
T Consensus 14 ~~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~ 82 (99)
T 2yua_A 14 YSRTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRRKYDRG 82 (99)
T ss_dssp SCSSHHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCSSCSHHHHHHHHHHHHHHHTTSHHHHHHHHHT
T ss_pred CCccCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHh
Confidence 45689999999999999999999999999999999996 577899999999999999999999999984
No 20
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=2e-21 Score=153.71 Aligned_cols=102 Identities=29% Similarity=0.608 Sum_probs=91.6
Q ss_pred cceEEEEeecceeeeeceEEEEEeeeeeeCCCCCCCCccCCCCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCcc
Q 019721 165 LDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDG 244 (336)
Q Consensus 165 ~di~~~l~vslee~~~G~~~~v~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G 244 (336)
.|+.++|.|||+|||+|.++++.+++.+.|+.|+|+|..+.....+|+.|+|+|.+...+ |++++..+|+.|+|+|
T Consensus 2 ~~~~~~l~vslee~~~G~~~~i~~~~~~~C~~C~G~G~~~g~~~~~C~~C~G~G~~~~~~----G~~~~~~~C~~C~G~G 77 (104)
T 2ctt_A 2 SSGSSGMELTFNQAAKGVNKEFTVNIMDTCERCNGKGNEPGTKVQHCHYCGGSGMETINT----GPFVMRSTCRRCGGRG 77 (104)
T ss_dssp CCCCCCCCCCCSSCCSSSCTTCCSSCCEECSSSSSSSSCTTCCCEECSSSSSSCEEEEEE----TTEEEEEECSSSSSSS
T ss_pred CceEEEEEEEHHHHcCCCEEEEEeeeeeECCCCcCCccCCCCCCccCCCCCCCEEEEEEe----CCEEEEEECCcCCCcc
Confidence 567788999999999999999999999999999999999888889999999999876543 4566678999999999
Q ss_pred eEEeeeeeecCCceEEeeeeEEEEEe
Q 019721 245 KIIIDHCRRCGGNGEVQSKRSMKVVI 270 (336)
Q Consensus 245 ~~~~~~C~~C~g~g~~~~~~~l~V~I 270 (336)
+++.++|+.|+|.+.+.+.++|+|.+
T Consensus 78 ~~i~~~C~~C~G~G~v~~~k~l~V~~ 103 (104)
T 2ctt_A 78 SIIISPCVVCRGAGQAKQKKRSGPSS 103 (104)
T ss_dssp EECSSCCSSSSSCSEECCCCSSCCSC
T ss_pred eECCCcCCCCCCeeEEEEEEEEEEEc
Confidence 99999999999999998888777754
No 21
>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1
Probab=99.80 E-value=1.1e-20 Score=146.75 Aligned_cols=70 Identities=31% Similarity=0.575 Sum_probs=64.1
Q ss_pred ccccCcceecccCCCCCHHHHHHHHHHHHHHhCCCCCCC-------cchHHHHHHHHHHHHHhchhcccccccccCC
Q 019721 41 AAGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKS-------PGAEEKFKEISSAYEVLSDDEKRSVYDRFGE 110 (336)
Q Consensus 41 ~~~~d~Y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~~-------~~~~~~f~~i~~Ay~vL~d~~~r~~YD~~G~ 110 (336)
+...|||+||||+++|+.+|||+|||+|+++||||+++. +.+.++|++|++||++|+||.+|+.||.+..
T Consensus 13 ~~~~~~y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~ 89 (94)
T 1wjz_A 13 TLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQRS 89 (94)
T ss_dssp SSCSCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHSC
T ss_pred CCCCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCChhhhHHHHHHHHHHHHHHHHHCCHHHHHHHHHHcc
Confidence 346899999999999999999999999999999999863 4578999999999999999999999998654
No 22
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Probab=99.79 E-value=3.1e-20 Score=164.25 Aligned_cols=89 Identities=38% Similarity=0.712 Sum_probs=75.5
Q ss_pred cCcceecccCCCCCHHHHHHHHHHHHHHhCCCCCC-CcchHHHHHHHHHHHHHhchhcccccccccCCCCcCCcccCCCC
Q 019721 44 TDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINK-SPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSN 122 (336)
Q Consensus 44 ~d~Y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~-~~~~~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~g~~~~~~~~~~ 122 (336)
.|||+||||+++|+.+|||+|||+||++||||+++ ++++.++|++|++||++|+||.+|+.||++|++++....
T Consensus 2 ~~~y~~l~~~~~a~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~~~~~~----- 76 (210)
T 3apq_A 2 QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKGLEDNQ----- 76 (210)
T ss_dssp CCHHHHHTCCTTCCHHHHHHHHHHHHHHHCGGGCTTCTTHHHHHHHHHHHHHHHTSHHHHHHHHHHTTTTCCTTC-----
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHhccccccccc-----
Confidence 58999999999999999999999999999999996 678999999999999999999999999999998775432
Q ss_pred CCCCCCchhhhccccC
Q 019721 123 TSQGVDPFELYSAFFG 138 (336)
Q Consensus 123 ~~~~~d~~~~f~~ffg 138 (336)
......+.+|...|+
T Consensus 77 -~~~~~~~~~~~~~fg 91 (210)
T 3apq_A 77 -GGQYESWSYYRYDFG 91 (210)
T ss_dssp -SCCCCCHHHHHHSSS
T ss_pred -ccccccccccccccc
Confidence 122344555655554
No 23
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=4e-20 Score=142.31 Aligned_cols=65 Identities=32% Similarity=0.495 Sum_probs=61.1
Q ss_pred cccccCcceecccCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhchhccccc
Q 019721 40 RAAGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSV 104 (336)
Q Consensus 40 ~~~~~d~Y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~~~~~~~~f~~i~~Ay~vL~d~~~r~~ 104 (336)
+....|||+||||+++|+.+|||+|||+|+++||||+++++.+.++|++|++||++|+|+.+|+.
T Consensus 23 ~~~~~~~y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~ 87 (90)
T 2ys8_A 23 IRNSKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPGSEDAFKAVVNARTALLKNIKSGP 87 (90)
T ss_dssp HHTCSSHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHHHHHHHHHCCSC
T ss_pred HhcCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCcccccC
Confidence 34568999999999999999999999999999999999988999999999999999999999874
No 24
>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}
Probab=99.78 E-value=2.7e-20 Score=148.41 Aligned_cols=71 Identities=39% Similarity=0.614 Sum_probs=65.7
Q ss_pred ccccCcceecccCCCC-CHHHHHHHHHHHHHHhCCCCCCC----cchHHHHHHHHHHHHHhchhcccccccccCCC
Q 019721 41 AAGTDYYSTLNVRQNA-TLQEIKTSYRKLARKYHPDINKS----PGAEEKFKEISSAYEVLSDDEKRSVYDRFGEA 111 (336)
Q Consensus 41 ~~~~d~Y~iLgv~~~a-~~~eIk~ayr~la~~~hPd~~~~----~~~~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~ 111 (336)
....|||+||||+++| +.+|||+|||+|+++||||+++. +.+.++|++|++||++|+||.+|+.||+++..
T Consensus 12 ~~~~~~y~iLgv~~~a~s~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~AY~~L~d~~~R~~YD~~~~~ 87 (109)
T 2qsa_A 12 CGLENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEAKTNYDYYLDH 87 (109)
T ss_dssp TTTSCHHHHTTCCGGGCCHHHHHHHHHHHHHHTCGGGCCSHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHC
T ss_pred cCCCCHHHHcCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccccHHHHHHHHHHHHHHHHHCCHHHHHHHHHhccC
Confidence 4568999999999999 99999999999999999999875 56889999999999999999999999998753
No 25
>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1
Probab=99.74 E-value=1.7e-19 Score=144.35 Aligned_cols=65 Identities=25% Similarity=0.422 Sum_probs=60.9
Q ss_pred ccCcceecccCCCCCH--HHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhchhcccccccccCC
Q 019721 43 GTDYYSTLNVRQNATL--QEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGE 110 (336)
Q Consensus 43 ~~d~Y~iLgv~~~a~~--~eIk~ayr~la~~~hPd~~~~~~~~~~f~~i~~Ay~vL~d~~~r~~YD~~G~ 110 (336)
..+||+||||+++|+. ++||+|||+||+++|||++++ .++|++|++||+||+||.+|+.||.+|.
T Consensus 7 ~~~~Y~iLgv~~~as~~~~eIk~aYr~la~~~HPDk~~~---~e~f~~I~~AYevL~d~~~R~~~~~~~~ 73 (114)
T 1gh6_A 7 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD---EEKMKKMNTLYKKMEDGVKYAHQPDFGG 73 (114)
T ss_dssp HHHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCT---TTTTHHHHHHHHHHHHHHHSCCSSCCSC
T ss_pred hhhHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCCCCCcc---HHHHHHHHHHHHHHCCHHHHHHhhhccc
Confidence 4699999999999999 999999999999999999865 4799999999999999999999999875
No 26
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}
Probab=99.73 E-value=9.3e-19 Score=148.18 Aligned_cols=70 Identities=31% Similarity=0.551 Sum_probs=63.4
Q ss_pred ccccCcceecccCCCCCHHHHHHHHHHHHHHhCCCCCCCcc-------hHHHHHHHHHHHHHhchhcccccccccCC
Q 019721 41 AAGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPG-------AEEKFKEISSAYEVLSDDEKRSVYDRFGE 110 (336)
Q Consensus 41 ~~~~d~Y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~~~~-------~~~~f~~i~~Ay~vL~d~~~r~~YD~~G~ 110 (336)
+...|||+||||+++|+.++||+|||+|++++|||+++... +.++|++|++||++|+||.+|+.||..+.
T Consensus 7 ~~~~~~y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~Yd~~~~ 83 (155)
T 2l6l_A 7 MPKKDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNEETKREYDLQRC 83 (155)
T ss_dssp CCCSHHHHHHTCCTTCCHHHHHHHHHHHHHHHSCCCCCCCCTTHHHHHHHHHHHHHHHHHHHSSSHHHHCHHHHHHH
T ss_pred CCCCChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCchhHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 34579999999999999999999999999999999987542 57899999999999999999999998653
No 27
>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.72 E-value=1.3e-18 Score=132.89 Aligned_cols=68 Identities=22% Similarity=0.156 Sum_probs=59.6
Q ss_pred ccccccccCcceecccCCCCCHHHHHHHHHHHHHHhCCCCCCC--cchHHHHHHHHHHHHHhchhccccc
Q 019721 37 GMIRAAGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKS--PGAEEKFKEISSAYEVLSDDEKRSV 104 (336)
Q Consensus 37 ~~~~~~~~d~Y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~~--~~~~~~f~~i~~Ay~vL~d~~~r~~ 104 (336)
+...+...++|+||||+++|+.+|||+|||+||++||||++++ +.+.++|++|++||++|+|...|..
T Consensus 9 ~~~~~~~~~~y~vLgv~~~as~~eIKkaYrkla~~~HPDk~~~~~~~a~~~F~~I~~AYevL~~~~~r~~ 78 (88)
T 1iur_A 9 VPRGSILKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEKQAFLDQ 78 (88)
T ss_dssp CCSSSCHHHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHHHHHHHHHHHTTCSS
T ss_pred CCCCccHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHHHHhhccccc
Confidence 3344556799999999999999999999999999999999975 3478999999999999999888743
No 28
>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1
Probab=99.72 E-value=1.6e-18 Score=129.94 Aligned_cols=66 Identities=14% Similarity=0.296 Sum_probs=59.6
Q ss_pred ccCcceecccCCC--CCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhchhcccccccccCCCC
Q 019721 43 GTDYYSTLNVRQN--ATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAG 112 (336)
Q Consensus 43 ~~d~Y~iLgv~~~--a~~~eIk~ayr~la~~~hPd~~~~~~~~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~g 112 (336)
..++|+||||+++ |+.+|||+|||+||++||||++. +.++|++|++||++|+|+.+|.. |.||.++
T Consensus 10 ~~~~y~iLgl~~~~~a~~~eIk~aYr~la~~~HPDk~~---~~~~f~~i~~AYe~L~~~~~r~~-~~~g~~~ 77 (79)
T 1faf_A 10 KERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGG---SHALMQELNSLWGTFKTEVYNLR-MNLGGTG 77 (79)
T ss_dssp HHHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSC---CHHHHHHHHHHHHHHHHHHHHHT-TCCSSCC
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCC---CHHHHHHHHHHHHHHhhHHHHHH-HhcCCcc
Confidence 4689999999999 99999999999999999999974 46899999999999999999987 5677654
No 29
>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C
Probab=99.72 E-value=2.3e-19 Score=153.35 Aligned_cols=66 Identities=24% Similarity=0.452 Sum_probs=58.7
Q ss_pred cccCcceecccCCCCC--HHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhchhcccccccccCC
Q 019721 42 AGTDYYSTLNVRQNAT--LQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGE 110 (336)
Q Consensus 42 ~~~d~Y~iLgv~~~a~--~~eIk~ayr~la~~~hPd~~~~~~~~~~f~~i~~Ay~vL~d~~~r~~YD~~G~ 110 (336)
...|||+||||+++|+ .+|||+|||+||+++|||++++ +++|++|++||++|+||.+|+.||++|.
T Consensus 9 ~~~d~Y~vLGl~~~as~~~~eIKkAYRkLa~~~HPDk~~~---~e~F~~I~~AYevLsdp~kR~~YD~~G~ 76 (174)
T 2pf4_E 9 ESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD---EEKMKKMNTLYKKMEDGVKYAHQPDFGG 76 (174)
T ss_dssp HHHHHHHTTTCCGGGTTCHHHHHHHHHHHGGGCSCC---C---CTTTTHHHHHHHHHHHHHHHHTSCGGGG
T ss_pred ccccHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCcCCCCC---HHHHHHHHHHHHHhCCHHHHHHHhccCC
Confidence 3479999999999999 6999999999999999999865 3789999999999999999999999995
No 30
>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J
Probab=99.68 E-value=1.6e-17 Score=142.74 Aligned_cols=62 Identities=21% Similarity=0.393 Sum_probs=58.4
Q ss_pred cCcceecccCCCCCHHHHHHHHHHHHHHhCCCCCCCcc----hHHHHHHHHHHHHHhchhcccccc
Q 019721 44 TDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPG----AEEKFKEISSAYEVLSDDEKRSVY 105 (336)
Q Consensus 44 ~d~Y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~~~~----~~~~f~~i~~Ay~vL~d~~~r~~Y 105 (336)
.|||++|||+++|+.+|||+|||+|+++||||+++... ++++|++|++||++|+|+.+|+.|
T Consensus 117 ~d~Y~vLgv~~~As~~eIKkAYRklal~~HPDK~~~~~~e~~A~~~F~~I~eAYevLsD~~kR~~Y 182 (182)
T 1n4c_A 117 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPLY 182 (182)
T ss_dssp CCCCCCCCGGGGSSHHHHHHHHHHHHHHTCGGGGSSCTTHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred cchhhcCCCCCCCCHHHHHHHHHHHHHHHCcCcCCCcchHHHHHHHHHHHHHHHHHHCCHHhhhhC
Confidence 69999999999999999999999999999999987543 789999999999999999999988
No 31
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304, center for structural genomics of infectious diseases, CSGI; 2.15A {Vibrio cholerae}
Probab=99.68 E-value=1.3e-17 Score=143.51 Aligned_cols=67 Identities=21% Similarity=0.397 Sum_probs=60.3
Q ss_pred cccCcceecccCCCCC--HHHHHHHHHHHHHHhCCCCCCCcc------hHHHHHHHHHHHHHhchhccccccccc
Q 019721 42 AGTDYYSTLNVRQNAT--LQEIKTSYRKLARKYHPDINKSPG------AEEKFKEISSAYEVLSDDEKRSVYDRF 108 (336)
Q Consensus 42 ~~~d~Y~iLgv~~~a~--~~eIk~ayr~la~~~hPd~~~~~~------~~~~f~~i~~Ay~vL~d~~~r~~YD~~ 108 (336)
...|||+||||+++++ .++||+|||+|+++||||+++... +.++|+.|++||++|+||.+|+.||..
T Consensus 2 ~~~d~Y~iLgl~~~a~id~~eIk~aYr~l~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~ 76 (174)
T 3hho_A 2 NAMNYFELFGLPIQFELDGSLLSSQFRALQKRFHPDNFATASERDRLMAVQQAAQINDAYQTLKDPLRRAEYLLS 76 (174)
T ss_dssp --CCHHHHTTCCSSSCCCHHHHHHHHHHHHHHHCGGGSTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHH
T ss_pred CCCCHHHHcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHH
Confidence 3579999999999998 999999999999999999987543 668999999999999999999999973
No 32
>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A
Probab=99.67 E-value=2.1e-17 Score=126.76 Aligned_cols=55 Identities=20% Similarity=0.294 Sum_probs=50.7
Q ss_pred cCcceecccCCCCCHHHHHHHHHHHHHHhCCCCCCCc----chHHHHHHHHHHHHHhch
Q 019721 44 TDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSP----GAEEKFKEISSAYEVLSD 98 (336)
Q Consensus 44 ~d~Y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~~~----~~~~~f~~i~~Ay~vL~d 98 (336)
.++|++|||++.||.+|||+|||++|++||||++++. .++++|++|++||+||.+
T Consensus 33 ~~~y~~Lgv~~~as~~eIKkAYRklal~~HPDK~~~~~~~~~A~~~F~~i~eAyevL~~ 91 (92)
T 2qwo_B 33 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFEN 91 (92)
T ss_dssp CCSCCCCCGGGSSSHHHHHHHHHHHHHHTCHHHHTTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCeecCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHhHHHHHHHHHHHHHHHHHh
Confidence 5899999999999999999999999999999998743 278899999999999975
No 33
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}
Probab=99.66 E-value=6.8e-18 Score=176.42 Aligned_cols=79 Identities=39% Similarity=0.720 Sum_probs=40.9
Q ss_pred cccccccCcceecccCCCCCHHHHHHHHHHHHHHhCCCCCC-CcchHHHHHHHHHHHHHhchhcccccccccCCCCcCCc
Q 019721 38 MIRAAGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINK-SPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGE 116 (336)
Q Consensus 38 ~~~~~~~d~Y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~-~~~~~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~g~~~~ 116 (336)
.....+.|||++|||+++||.+|||+|||+||++||||+++ ++.+.++|++|++||++|+||.+|+.||+||++++...
T Consensus 15 ~~~~~~~~~y~~lg~~~~a~~~~i~~ay~~l~~~~hpd~~~~~~~~~~~f~~i~~ay~~L~~~~~r~~yd~~~~~~~~~~ 94 (780)
T 3apo_A 15 IEGRHDQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKGLEDN 94 (780)
T ss_dssp --------CHHHHTCCTTCCHHHHHHHHCC-----------------------CTHHHHHHSHHHHHHHTTC--------
T ss_pred CCCCCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHHcChHHHHHHHhhcccccccC
Confidence 34456789999999999999999999999999999999996 67789999999999999999999999999999887643
No 34
>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana}
Probab=99.65 E-value=3.3e-17 Score=129.46 Aligned_cols=59 Identities=17% Similarity=0.256 Sum_probs=52.4
Q ss_pred cccCcceecccCCCCCHHHHHHHHHHHHHHhCCCCCCCc--------chHHHHHHHHHHHHHhchhcc
Q 019721 42 AGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSP--------GAEEKFKEISSAYEVLSDDEK 101 (336)
Q Consensus 42 ~~~d~Y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~~~--------~~~~~f~~i~~Ay~vL~d~~~ 101 (336)
.+.|||++|+++. ||.+|||+|||+||++||||+++++ .|+++|++|++||++|+|+..
T Consensus 39 ~~~d~Y~vl~~~~-As~~eIKkAYRklal~~HPDK~~~~~~~~e~~~~A~~~F~~I~~AYevLsd~~~ 105 (106)
T 3ag7_A 39 SGSGWKPVPLMDM-IEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFNTLGP 105 (106)
T ss_dssp TTSCCCCCCGGGS-CSHHHHHHHHHHHHHHHCHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred ccCCHHHHcCCCC-CCHHHHHHHHHHHHHHHCcCcCCCcccchhhHHHHHHHHHHHHHHHHHHcCccc
Confidence 3579999999996 9999999999999999999998632 358899999999999999863
No 35
>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=99.64 E-value=7.1e-17 Score=118.49 Aligned_cols=58 Identities=22% Similarity=0.284 Sum_probs=52.6
Q ss_pred ccCcceecccCC-CCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhchhcccc
Q 019721 43 GTDYYSTLNVRQ-NATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRS 103 (336)
Q Consensus 43 ~~d~Y~iLgv~~-~a~~~eIk~ayr~la~~~hPd~~~~~~~~~~f~~i~~Ay~vL~d~~~r~ 103 (336)
..++|+||||++ +|+.+|||+|||+|+++||||++ ++.++|++|++||++|+|+..|+
T Consensus 13 ~~~~y~iLgl~~~~a~~~eIk~ayr~l~~~~HPDk~---g~~~~f~~i~~Aye~L~~~~~rk 71 (71)
T 2guz_A 13 SKEALQILNLTENTLTKKKLKEVHRKIMLANHPDKG---GSPFLATKINEAKDFLEKRGISK 71 (71)
T ss_dssp HHHHHHHTTCCTTTCCHHHHHHHHHHHHHHHCGGGT---CCHHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHCCCCC---CCHHHHHHHHHHHHHHhhhhhcC
Confidence 469999999999 79999999999999999999996 34579999999999999987763
No 36
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=99.64 E-value=7e-17 Score=142.51 Aligned_cols=66 Identities=23% Similarity=0.428 Sum_probs=59.5
Q ss_pred cccCcceecccCCC--CCHHHHHHHHHHHHHHhCCCCCCCcc------hHHHHHHHHHHHHHhchhcccccccc
Q 019721 42 AGTDYYSTLNVRQN--ATLQEIKTSYRKLARKYHPDINKSPG------AEEKFKEISSAYEVLSDDEKRSVYDR 107 (336)
Q Consensus 42 ~~~d~Y~iLgv~~~--a~~~eIk~ayr~la~~~hPd~~~~~~------~~~~f~~i~~Ay~vL~d~~~r~~YD~ 107 (336)
...|||++|||+++ ++.++||+|||+|+++||||++++.. +.++|++|++||++|+||.+|+.||.
T Consensus 41 ~~~d~y~lLgv~~~~~a~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vLsdp~~R~~Yd~ 114 (207)
T 3bvo_A 41 PTRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLAPLSRGLYLL 114 (207)
T ss_dssp TTCCHHHHTTSCSCSCCCHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHH
T ss_pred CCCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Confidence 36799999999997 79999999999999999999987432 56789999999999999999999995
No 37
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Probab=99.63 E-value=5.7e-17 Score=139.14 Aligned_cols=65 Identities=25% Similarity=0.369 Sum_probs=59.8
Q ss_pred CcceecccCCCC--CHHHHHHHHHHHHHHhCCCCCCCcc------hHHHHHHHHHHHHHhchhcccccccccC
Q 019721 45 DYYSTLNVRQNA--TLQEIKTSYRKLARKYHPDINKSPG------AEEKFKEISSAYEVLSDDEKRSVYDRFG 109 (336)
Q Consensus 45 d~Y~iLgv~~~a--~~~eIk~ayr~la~~~hPd~~~~~~------~~~~f~~i~~Ay~vL~d~~~r~~YD~~G 109 (336)
|||++|||++++ +.++||+|||+|+++||||++++.. +.++|+.|++||++|+||.+|+.||..-
T Consensus 2 d~y~lLgl~~~a~i~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~l 74 (171)
T 1fpo_A 2 DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSL 74 (171)
T ss_dssp HHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHT
T ss_pred CHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHh
Confidence 899999999999 9999999999999999999987532 4579999999999999999999999853
No 38
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Probab=99.59 E-value=1.9e-16 Score=136.93 Aligned_cols=64 Identities=23% Similarity=0.456 Sum_probs=58.7
Q ss_pred ccCcceec------ccCC-CCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhchhccccccccc
Q 019721 43 GTDYYSTL------NVRQ-NATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRF 108 (336)
Q Consensus 43 ~~d~Y~iL------gv~~-~a~~~eIk~ayr~la~~~hPd~~~~~~~~~~f~~i~~Ay~vL~d~~~r~~YD~~ 108 (336)
..|||++| |+++ +|+.++||+|||+|+++||||++++ +.++|++|++||++|+||.+|+.||..
T Consensus 10 ~~d~y~ll~~~~p~~~~~~~a~~~eIk~aYr~la~~~HPDk~~~--a~~~f~~i~~AY~vL~dp~~R~~Yd~~ 80 (181)
T 3uo3_A 10 TSTFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQ--GSEQSSTLNQAYHTLKDPLRRSQYMLK 80 (181)
T ss_dssp SCCTGGGCTTTCTTCSCCSCCCHHHHHHHHHHHHHTCCTTSCCS--CSSGGGSHHHHHHHHHSHHHHHHHHHH
T ss_pred CCCHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHhCcCCCcc--HHHHHHHHHHHHHHHcChHHHHHHHHH
Confidence 47999999 4665 8999999999999999999999865 778999999999999999999999983
No 39
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1
Probab=99.50 E-value=1.3e-14 Score=131.70 Aligned_cols=117 Identities=23% Similarity=0.472 Sum_probs=78.0
Q ss_pred eeCCCCCCCCccC---------CCCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCcceEEee-------------
Q 019721 192 ETCDSCGGTGAKS---------SNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIID------------- 249 (336)
Q Consensus 192 ~~C~~C~G~G~~~---------~~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~~~~------------- 249 (336)
..|+.|+|+|... .....+|+.|+|+|.++.. ..+|+.|+|.|.+...
T Consensus 55 ~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~i~~----------~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~ 124 (248)
T 1nlt_A 55 KKCTSCNGQGIKFVTRQMGPMIQRFQTECDVCHGTGDIIDP----------KDRCKSCNGKKVENERKILEVHVEPGMKD 124 (248)
T ss_dssp CCCTTSSSSSCEEEEEESSSEEEEEECSCTTCSSSSSCCCT----------TSBCSSSTTSCEEEEEEEEEEEECTTCCT
T ss_pred ccCCCCCCCcEEEEEEecCceEEEEEEcCCCCCCcCEEecc----------CCCCcccCCCceEeeeEEEEEEECCCccC
Confidence 6799999998642 1245789999999976521 1679999998876430
Q ss_pred ------------------------------------------------eeeecCCceEEee--eeEEEEEeCCC--CCCC
Q 019721 250 ------------------------------------------------HCRRCGGNGEVQS--KRSMKVVIPPG--VSNG 277 (336)
Q Consensus 250 ------------------------------------------------~C~~C~g~g~~~~--~~~l~V~Ip~G--~~~G 277 (336)
.=..+++...+.. .+.++|+|||| +++|
T Consensus 125 G~~ir~~g~G~~~~~g~~GDl~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~i~v~tldG~~~~i~ip~g~vt~~g 204 (248)
T 1nlt_A 125 GQRIVFKGEADQAPDVIPGDVVFIVSERPHKSFKRDGDDLVYEAEIDLLTAIAGGEFALEHVSGDWLKVGIVPGEVIAPG 204 (248)
T ss_dssp TCEEEETTCSCCCTTCBCCCEEEEEEECCCSSCEEETTEEEEEEEEEHHHHHHCBCCEEECSSSCEEECCBCTTTTCSTT
T ss_pred CCEEEEeeeecCCCCCCcceEEEEEEEecCccceeeCCEEEEEEEeCHHHHhcCCEEEEeCCCCCEEEEEeCCCCeeCCC
Confidence 0112333333332 33679999999 9999
Q ss_pred cEEEEccCCCCCCCCCCCccEEEEEEEecCCC--cccccccee
Q 019721 278 ATMQIRGEGNFDRRRSLAGDLFVALHVDEKQG--IHRDGLNLF 318 (336)
Q Consensus 278 ~~i~l~G~G~~~~~~g~~GDL~v~i~v~~~~~--f~r~g~dL~ 318 (336)
++++|+|+|++...+..+|||||+|+|..|.. ++.++.+|+
T Consensus 205 ~~~rl~g~Gmp~~~~~~~GDL~V~~~V~~P~~~~Ls~~q~~~l 247 (248)
T 1nlt_A 205 MRKVIEGKGMPIPKYGGYGNLIIKFTIKDPENHFTSEENLKKL 247 (248)
T ss_dssp CEEEETTCSCBCSSSCSBCCEEEEEEEECCC------------
T ss_pred eEEEEcCCCCccCCCCCcCCEEEEEEEECCCCCCCCHHHHHhh
Confidence 99999999999654446799999999999988 887776664
No 40
>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1
Probab=99.43 E-value=5.6e-14 Score=105.10 Aligned_cols=78 Identities=38% Similarity=0.856 Sum_probs=67.1
Q ss_pred ceEEEEEeeeeeeCCCCCCCCccCCCCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCcceEEeeeeeecCCceEE
Q 019721 181 GGQRGIEVSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEV 260 (336)
Q Consensus 181 G~~~~v~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~~ 260 (336)
|.+++|.+++.+.|+.|+|+|........+|+.|+|+|.++..+ ++++...+|+.|+|.|+++.+.|+.|+|.+.+
T Consensus 1 G~~~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~----g~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~~ 76 (79)
T 1exk_A 1 GVTKEIRIPTLEECDVCHGSGAKPGTQPQTCPTCHGSGQVQMRQ----GFFAVQQTCPHCQGRGTLIKDPCNKCHGHGRV 76 (79)
T ss_dssp CTTTSCCCCCEEECGGGTTTSBCSSSCCEECTTTTTSSEEEEEE----TTEEEEEECTTTTTSSEECSSBCGGGTTSSEE
T ss_pred CcEEEEEcccceECCCCcccccCCCccCCCCCCCcCeEEEEEEc----CCCEEeeECcCCCCccEECCCcCCCCCCeEEE
Confidence 45567788999999999999998877778999999999987644 56666689999999999999999999999987
Q ss_pred ee
Q 019721 261 QS 262 (336)
Q Consensus 261 ~~ 262 (336)
.+
T Consensus 77 ~~ 78 (79)
T 1exk_A 77 ER 78 (79)
T ss_dssp EC
T ss_pred ee
Confidence 53
No 41
>3i38_A Putative chaperone DNAJ; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Klebsiella pneumoniae subsp}
Probab=99.34 E-value=5e-13 Score=106.04 Aligned_cols=86 Identities=22% Similarity=0.435 Sum_probs=72.5
Q ss_pred CCCCcceEEEEeecceeeeeceEEEEEeeeeeeCCCCCCCCccCCCCcccCCCCCCccEEEEeeecCCcceeeeecCCCC
Q 019721 161 GNFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKC 240 (336)
Q Consensus 161 ~~~g~di~~~l~vslee~~~G~~~~v~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C 240 (336)
.+.|.|+.+++.|||.||+.|++++|...
T Consensus 8 ~R~G~DL~~~~~Isl~eAl~G~~i~v~tl--------------------------------------------------- 36 (109)
T 3i38_A 8 DIVGHNLEIVLPLAPWEAALGAKVTVPTL--------------------------------------------------- 36 (109)
T ss_dssp EEETTEEEEEEEECHHHHHHCEEEEECCS---------------------------------------------------
T ss_pred EEECCEEEEEEEcCHHHHhCCCEEEEEcC---------------------------------------------------
Confidence 35689999999999999999998776421
Q ss_pred CCcceEEeeeeeecCCceEEeeeeEEEEEeCCCCCCCcEEEEccCCCCCCCCCCCccEEEEEEEecCCCccccccceeee
Q 019721 241 GGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSK 320 (336)
Q Consensus 241 ~G~G~~~~~~C~~C~g~g~~~~~~~l~V~Ip~G~~~G~~i~l~G~G~~~~~~g~~GDL~v~i~v~~~~~f~r~g~dL~~~ 320 (336)
...++|+||+|+++|++++|+|+|++. + +.+|||||+|+|..|..++.++.+++..
T Consensus 37 ----------------------dG~~~v~ip~g~~~G~~~rl~G~G~p~-~-~~~GDL~v~~~V~~P~~Ls~~q~~~l~~ 92 (109)
T 3i38_A 37 ----------------------KESILLTVPPGSQAGQRLRIKGKGLVS-K-THTGDLFAVIKIVMPTKPDEKARELWQQ 92 (109)
T ss_dssp ----------------------SSCEEEEECTTCCTTCEEEETTCSCBC-S-SCBCCEEEEEEECCCSSCCHHHHHHHHH
T ss_pred ----------------------CCCEEEeeCCCcCcCeEEEECCccCCC-C-CCCcCEEEEEEEECCCCCCHHHHHHHHH
Confidence 114689999999999999999999997 3 3789999999999999998888777655
Q ss_pred c
Q 019721 321 I 321 (336)
Q Consensus 321 ~ 321 (336)
+
T Consensus 93 l 93 (109)
T 3i38_A 93 L 93 (109)
T ss_dssp H
T ss_pred H
Confidence 3
No 42
>1xao_A YDJ1, mitochondrial protein import protein MAS5; beta sheets, chaperone; 2.07A {Saccharomyces cerevisiae}
Probab=99.29 E-value=1.7e-12 Score=104.98 Aligned_cols=88 Identities=24% Similarity=0.363 Sum_probs=70.1
Q ss_pred CCCcceEEEEeecceeeeeceEEEEEeeeeeeCCCCCCCCccCCCCcccCCCCCCccEEEEeeecCCcceeeeecCCCCC
Q 019721 162 NFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCG 241 (336)
Q Consensus 162 ~~g~di~~~l~vslee~~~G~~~~v~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~ 241 (336)
++|.|+.+++.|||.||+.|+++.+...
T Consensus 4 R~G~DL~~~~~Isl~eAllG~~i~v~tl---------------------------------------------------- 31 (121)
T 1xao_A 4 RDGDDLVYEAEIDLLTAIAGGEFALEHV---------------------------------------------------- 31 (121)
T ss_dssp EETTEEEEEEEEEHHHHHHCEEEEEECT----------------------------------------------------
T ss_pred EECCeEEEEEEcCHHHHhCCCEEEEecC----------------------------------------------------
Confidence 4689999999999999999998776421
Q ss_pred CcceEEeeeeeecCCceEEeeeeEEEEEeCCC--CCCCcEEEEccCCCCCCCCCCCccEEEEEEEecCCC--ccccccce
Q 019721 242 GDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPG--VSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQG--IHRDGLNL 317 (336)
Q Consensus 242 G~G~~~~~~C~~C~g~g~~~~~~~l~V~Ip~G--~~~G~~i~l~G~G~~~~~~g~~GDL~v~i~v~~~~~--f~r~g~dL 317 (336)
+.+.++|+||+| +++|++++|+|+|++...+..+|||||+|+|..|.. ++.++.++
T Consensus 32 --------------------dG~~~~v~ip~g~v~~~G~~~rl~G~Gmp~~~~~~~GDL~V~~~V~~P~~~~ls~~q~~~ 91 (121)
T 1xao_A 32 --------------------SGDWLKVGIVPGEVIAPGMRKVIEGKGMPIPKYGGYGNLIIKFTIKFPENHFTSEENLKK 91 (121)
T ss_dssp --------------------TSCEEEEEECTTSCCCTTCEEEETTCSCC------CCCEEEEEEEECCCTTCSCHHHHHH
T ss_pred --------------------CCCEEEEEeCCCCeeCCCcEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCCCHHHHHH
Confidence 124578999999 999999999999999654446899999999999988 88877777
Q ss_pred eeec
Q 019721 318 FSKI 321 (336)
Q Consensus 318 ~~~~ 321 (336)
+..+
T Consensus 92 l~~l 95 (121)
T 1xao_A 92 LEEI 95 (121)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6554
No 43
>2q2g_A HSP40 protein, heat shock 40 kDa protein, putative (fragment); malaria, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum iowa II}
Probab=99.08 E-value=7.3e-11 Score=101.91 Aligned_cols=87 Identities=11% Similarity=0.159 Sum_probs=72.2
Q ss_pred CCCCcceEEEEeecceeeeeceEEEEEeeeeeeCCCCCCCCccCCCCcccCCCCCCccEEEEeeecCCcceeeeecCCCC
Q 019721 161 GNFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKC 240 (336)
Q Consensus 161 ~~~g~di~~~l~vslee~~~G~~~~v~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C 240 (336)
.+.|.|+.+++.|||.||+.|+++.+...
T Consensus 89 ~R~G~DL~~~~~Isl~eAllG~~i~v~tl--------------------------------------------------- 117 (180)
T 2q2g_A 89 TRDDCHLIMKVTIPLVRALTGFTCPVTTL--------------------------------------------------- 117 (180)
T ss_dssp EEETTEEEEEEEEEHHHHHHCEEEEEECT---------------------------------------------------
T ss_pred EEcCCEEEEEEEcCHHHHhCCCEEEeeCC---------------------------------------------------
Confidence 45789999999999999999998776532
Q ss_pred CCcceEEeeeeeecCCceEEeeeeEEEEEeCCCCCCCcEEEEccCCCCCCCC-CCCccEEEEEEEecCCCccccccceee
Q 019721 241 GGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRR-SLAGDLFVALHVDEKQGIHRDGLNLFS 319 (336)
Q Consensus 241 ~G~G~~~~~~C~~C~g~g~~~~~~~l~V~Ip~G~~~G~~i~l~G~G~~~~~~-g~~GDL~v~i~v~~~~~f~r~g~dL~~ 319 (336)
+...++|.||+|+++|++++++|+|++...+ +.+|||||+|+|..|..++.++.+++.
T Consensus 118 ---------------------dG~~v~i~ip~~t~~g~~~rl~g~Gmp~~~~~~~~GDL~V~~~V~~P~~Ls~~q~~~l~ 176 (180)
T 2q2g_A 118 ---------------------DNRNLQIPIKEIVNPKTRKIVPNEGMPIKNQPGQKGDLILEFDICFPKSLTPEQKKLIK 176 (180)
T ss_dssp ---------------------TCCEEEEEECSCCCTTCEEEETTCSCBCSSSTTCBCCEEEEEEEECCSCCCHHHHHHHH
T ss_pred ---------------------CCCEEEEECCCccCCCEEEEECCcCCCcCCCCCCcCCEEEEEEEECCCCCCHHHHHHHH
Confidence 1235788999999999999999999996533 568999999999999988877766643
No 44
>3agx_A DNAJ homolog subfamily B member 1; chaperone; 1.85A {Homo sapiens} PDB: 3agy_A 3agz_A 2qld_A
Probab=99.07 E-value=8.1e-11 Score=101.68 Aligned_cols=87 Identities=21% Similarity=0.301 Sum_probs=72.4
Q ss_pred CCCCcceEEEEeecceeeeeceEEEEEeeeeeeCCCCCCCCccCCCCcccCCCCCCccEEEEeeecCCcceeeeecCCCC
Q 019721 161 GNFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKC 240 (336)
Q Consensus 161 ~~~g~di~~~l~vslee~~~G~~~~v~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C 240 (336)
.+.|.|+.+++.|||.||+.|+++.+...
T Consensus 89 ~R~G~DL~~~~~Isl~eAllG~~i~v~tl--------------------------------------------------- 117 (181)
T 3agx_A 89 KRDGSDVIYPARISLREALCGCTVNVPTL--------------------------------------------------- 117 (181)
T ss_dssp EEETTEEEEEEEEEHHHHHHCEEEEEECT---------------------------------------------------
T ss_pred eeeCCcEEEEEEcCHHHHhCCCEEEeECC---------------------------------------------------
Confidence 45789999999999999999998876532
Q ss_pred CCcceEEeeeeeecCCceEEeeeeEEEEEeCCCCCCCcEEEEccCCCCCCC-CCCCccEEEEEEEecCCCccccccceee
Q 019721 241 GGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRR-RSLAGDLFVALHVDEKQGIHRDGLNLFS 319 (336)
Q Consensus 241 ~G~G~~~~~~C~~C~g~g~~~~~~~l~V~Ip~G~~~G~~i~l~G~G~~~~~-~g~~GDL~v~i~v~~~~~f~r~g~dL~~ 319 (336)
+.+.++|.||+|+++|++++|+|+|++... .+.+|||||+|+|..|..++.++.+++.
T Consensus 118 ---------------------dG~~~~i~i~~~t~~g~~~rl~g~Gmp~~~~~~~~GDL~V~~~V~~P~~ls~~q~~~l~ 176 (181)
T 3agx_A 118 ---------------------DGRTIPVVFKDVIRPGMRRKVPGEGLPLPKTPEKRGDLIIEFEVIFPERIPQTSRTVLE 176 (181)
T ss_dssp ---------------------TSCEEEEEECSCCCTTCEEEETTCSCBCSSSTTSBCCEEEEEEEECCSCCCHHHHHHHH
T ss_pred ---------------------CCCEEEEECCCccCCCcEEEECCcCCCcCCCCCCcCCEEEEEEEECCCCCCHHHHHHHH
Confidence 123577899999999999999999999654 3568999999999999988877776654
No 45
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.04 E-value=1.1e-10 Score=111.55 Aligned_cols=65 Identities=49% Similarity=0.716 Sum_probs=56.1
Q ss_pred ccCcceecccCCCCCHHHHHHHHHHHHHHhCCCCCCCcc----hHHHHHHHHHHHHHhchhcccccccc
Q 019721 43 GTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPG----AEEKFKEISSAYEVLSDDEKRSVYDR 107 (336)
Q Consensus 43 ~~d~Y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~~~~----~~~~f~~i~~Ay~vL~d~~~r~~YD~ 107 (336)
..++|++||+.+.++.++|+++|+++++++|||+.+.+. +.++|++|.+||++|+|+++|+.||+
T Consensus 381 ~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~~yd~ 449 (450)
T 2y4t_A 381 KRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKKFDD 449 (450)
T ss_dssp SCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC-----
T ss_pred chhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHHhccC
Confidence 459999999999999999999999999999999987643 88999999999999999999999996
No 46
>1c3g_A Heat shock protein 40; beta sheets, short helices, chaperone; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 PDB: 2b26_A
Probab=99.03 E-value=1.4e-10 Score=99.15 Aligned_cols=86 Identities=26% Similarity=0.320 Sum_probs=71.1
Q ss_pred CCCCcceEEEEeecceeeeeceEEEEEeeeeeeCCCCCCCCccCCCCcccCCCCCCccEEEEeeecCCcceeeeecCCCC
Q 019721 161 GNFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKC 240 (336)
Q Consensus 161 ~~~g~di~~~l~vslee~~~G~~~~v~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C 240 (336)
.+.|.|+.+++.|||.||+.|+++.+...
T Consensus 83 ~R~G~DL~~~~~Isl~eAllG~~~~v~tl--------------------------------------------------- 111 (170)
T 1c3g_A 83 KRDGDDLIYTLPLSFKESLLGFSKTIQTI--------------------------------------------------- 111 (170)
T ss_dssp EEETTEEEEEECCBHHHHHHCEEEEEECS---------------------------------------------------
T ss_pred EEeCCcEeEEEEcCHHHHhCCCeEEeeCC---------------------------------------------------
Confidence 45689999999999999999998876532
Q ss_pred CCcceEEeeeeeecCCceEEeeeeEEEEEeCCCCCCCcEEEEccCCCCCCCC-CCCccEEEEEEEecCCCcccccccee
Q 019721 241 GGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRR-SLAGDLFVALHVDEKQGIHRDGLNLF 318 (336)
Q Consensus 241 ~G~G~~~~~~C~~C~g~g~~~~~~~l~V~Ip~G~~~G~~i~l~G~G~~~~~~-g~~GDL~v~i~v~~~~~f~r~g~dL~ 318 (336)
+...++|+||+|+++|++++++|+|++...+ +.+|||||+|+|..|..++.++.+|+
T Consensus 112 ---------------------dG~~~~i~i~~~t~~g~~~rl~g~G~p~~~~~~~~GDL~V~~~V~~P~~Ls~~q~~~l 169 (170)
T 1c3g_A 112 ---------------------DGRTLPLSRVQPVQPSQTSTYPGQGMPTPKNPSQRGNLIVKYKVDYPISLNDAQKRAI 169 (170)
T ss_dssp ---------------------SSCEEEEEESSCCCTTCEEECTTCSCBCSSCTTSBCCEEEEECCBCCSSCCTTHHHHT
T ss_pred ---------------------CCCEEEEECCCccCCCcEEEEeCCCCCcCCCCCCCCCEEEEEEEECCCCCCHHHHHhh
Confidence 1235788999999999999999999996433 46799999999999998887776553
No 47
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A
Probab=98.91 E-value=5.7e-10 Score=105.00 Aligned_cols=86 Identities=22% Similarity=0.435 Sum_probs=72.5
Q ss_pred CCCCcceEEEEeecceeeeeceEEEEEeeeeeeCCCCCCCCccCCCCcccCCCCCCccEEEEeeecCCcceeeeecCCCC
Q 019721 161 GNFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKC 240 (336)
Q Consensus 161 ~~~g~di~~~l~vslee~~~G~~~~v~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C 240 (336)
.+.|.||.+++.|+|.||+.|+++.|...
T Consensus 228 ~R~G~DL~~~~~Isl~eAllG~~v~VptL--------------------------------------------------- 256 (329)
T 3lz8_A 228 DIVGHNLEIVLPLAPWEAALGAKVTVPTL--------------------------------------------------- 256 (329)
T ss_dssp EEETTEEEEEEEECHHHHHHCEEEEECCS---------------------------------------------------
T ss_pred EEcCCcEEEEEECCHHHHcCCCeEEEECC---------------------------------------------------
Confidence 45689999999999999999998776432
Q ss_pred CCcceEEeeeeeecCCceEEeeeeEEEEEeCCCCCCCcEEEEccCCCCCCCCCCCccEEEEEEEecCCCccccccceeee
Q 019721 241 GGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSK 320 (336)
Q Consensus 241 ~G~G~~~~~~C~~C~g~g~~~~~~~l~V~Ip~G~~~G~~i~l~G~G~~~~~~g~~GDL~v~i~v~~~~~f~r~g~dL~~~ 320 (336)
...++|+||+|+++|++++|+|+|+|.. +.+|||||+|+|..|..++.++..|+..
T Consensus 257 ----------------------dG~v~l~ip~gt~~g~~~rl~G~GmP~~--~~rGDL~v~~~V~~P~~l~~~q~~~l~~ 312 (329)
T 3lz8_A 257 ----------------------KESILLTVPPGSQAGQRLRIKGKGLVSK--THTGDLFAVIKIVMPTKPDEKARELWQQ 312 (329)
T ss_dssp ----------------------SSCEEEEECTTCCTTCEEEETTCSCBCS--SCBCCEEEEEEECCCSSCCHHHHHHHHH
T ss_pred ----------------------CCCEEEEECCCCCCCCEEEEcCCCCCCC--CCCCCEEEEEEEECCCCCCHHHHHHHHH
Confidence 1125799999999999999999999964 4689999999999999998888777655
Q ss_pred c
Q 019721 321 I 321 (336)
Q Consensus 321 ~ 321 (336)
+
T Consensus 313 ~ 313 (329)
T 3lz8_A 313 L 313 (329)
T ss_dssp H
T ss_pred H
Confidence 3
No 48
>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=98.82 E-value=2.3e-09 Score=76.46 Aligned_cols=52 Identities=15% Similarity=0.183 Sum_probs=45.7
Q ss_pred CcceecccCCC---CCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhchh
Q 019721 45 DYYSTLNVRQN---ATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDD 99 (336)
Q Consensus 45 d~Y~iLgv~~~---a~~~eIk~ayr~la~~~hPd~~~~~~~~~~f~~i~~Ay~vL~d~ 99 (336)
+=|.||||+++ ++.++|+++||+|....|||+. +.......|++|++.|...
T Consensus 5 EA~~ILgv~~~~~~a~~~~Ik~~yr~Lm~~nhPDkG---GS~yl~~ki~~Ake~l~~~ 59 (65)
T 2guz_B 5 ESCKILNIEESKGDLNMDKINNRFNYLFEVNDKEKG---GSFYLQSKVYRAAERLKWE 59 (65)
T ss_dssp HHHHHTTCCGGGTCCSHHHHHHHHHHHHHHTCGGGT---CCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCcCcCCHHHHHHHHHHHHHHhCCCCC---CCHHHHHHHHHHHHHHHHH
Confidence 45789999999 9999999999999999999996 4556777999999998643
No 49
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.69 E-value=9.8e-06 Score=63.20 Aligned_cols=46 Identities=33% Similarity=0.826 Sum_probs=37.1
Q ss_pred eeeCCCCCCCCccC-----CCCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCcceEEe
Q 019721 191 FETCDSCGGTGAKS-----SNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIII 248 (336)
Q Consensus 191 ~~~C~~C~G~G~~~-----~~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~~~ 248 (336)
...|+.|+|+|... .....+|+.|+|+|.++. .+|+.|+|.|.+..
T Consensus 45 ~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i~------------~~C~~C~G~G~v~~ 95 (104)
T 2ctt_A 45 VQHCHYCGGSGMETINTGPFVMRSTCRRCGGRGSIII------------SPCVVCRGAGQAKQ 95 (104)
T ss_dssp CEECSSSSSSCEEEEEETTEEEEEECSSSSSSSEECS------------SCCSSSSSCSEECC
T ss_pred CccCCCCCCCEEEEEEeCCEEEEEECCcCCCcceECC------------CcCCCCCCeeEEEE
Confidence 46799999999752 224579999999998764 68999999998754
No 50
>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1
Probab=97.66 E-value=1.1e-05 Score=59.61 Aligned_cols=45 Identities=38% Similarity=0.910 Sum_probs=36.0
Q ss_pred eeeCCCCCCCCccCC-----CCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCcceEE
Q 019721 191 FETCDSCGGTGAKSS-----NCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKII 247 (336)
Q Consensus 191 ~~~C~~C~G~G~~~~-----~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~~ 247 (336)
...|+.|+|+|.... ....+|+.|+|+|.++. .+|+.|+|.|.+.
T Consensus 28 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~G~~~ 77 (79)
T 1exk_A 28 PQTCPTCHGSGQVQMRQGFFAVQQTCPHCQGRGTLIK------------DPCNKCHGHGRVE 77 (79)
T ss_dssp CEECTTTTTSSEEEEEETTEEEEEECTTTTTSSEECS------------SBCGGGTTSSEEE
T ss_pred CCCCCCCcCeEEEEEEcCCCEEeeECcCCCCccEECC------------CcCCCCCCeEEEe
Confidence 468999999997532 12469999999998753 6899999999875
No 51
>3pmq_A Decaheme cytochrome C MTRF; greek KEY, C type cytochrome, outer membrane, electron trans; HET: HEC; 3.20A {Shewanella oneidensis}
Probab=97.43 E-value=4.5e-06 Score=84.68 Aligned_cols=78 Identities=18% Similarity=0.320 Sum_probs=57.9
Q ss_pred EEEEeecceeeeeceEEEEEeeeeeeCCCCCCCCccCCC---CcccCCCCCCccEEEEee--------ecCCcce-eeee
Q 019721 168 RYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSN---CIQSCKACWGRGGVLKTQ--------RTPFGLI-SQVS 235 (336)
Q Consensus 168 ~~~l~vslee~~~G~~~~v~~~~~~~C~~C~G~G~~~~~---~~~~C~~C~G~G~~~~~~--------~~~~~~~-~~~~ 235 (336)
.+++.|+|+|+++|.++++.+.+...|..|+|+|...+. ...+|+.|+|+....... .+-.|.+ +...
T Consensus 168 ~~~l~i~feeA~~G~~k~i~v~~~~~C~tCHGsGA~~Gt~~~~~~tC~tCHGs~~~~~~~~~~~~~iH~iH~G~fP~~~~ 247 (669)
T 3pmq_A 168 ITNQHYDWQSSGNMLAYTRNLVSIDTCNSCHSNLAFHGGRYNQVETCVTCHNSKKVSNAADIFPQMIHSKHLTGFPQSIS 247 (669)
T ss_dssp SCCCEEEEECSSSSCCCCCCCCCSHHHHHHHSSCCTTTTTSCSSSCSTTTSSTTTCCCSSCSHHHHHHHHTTSSCSSCTT
T ss_pred eEEEEEEhHHhhCCCceEEEeccCCcCCCCCCCCCcCCccCcCCccCCCCCCCcccCCccccccceeeeeeccCCCCccC
Confidence 357888999999999999999999999999999998876 578999999994221110 0001222 2235
Q ss_pred cCCCCCCcce
Q 019721 236 TCSKCGGDGK 245 (336)
Q Consensus 236 ~C~~C~G~G~ 245 (336)
.|..|+..+.
T Consensus 248 ~C~~CH~~~~ 257 (669)
T 3pmq_A 248 NCQTCHADNP 257 (669)
T ss_dssp CCTTTSCCCT
T ss_pred cchhhcCCcc
Confidence 7999998764
No 52
>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*
Probab=97.38 E-value=2.1e-05 Score=53.51 Aligned_cols=38 Identities=32% Similarity=0.594 Sum_probs=26.5
Q ss_pred eeeCCCCCCCCccCCCCcccCCCCCCccEEEEee-ecCCcce
Q 019721 191 FETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQ-RTPFGLI 231 (336)
Q Consensus 191 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~-~~~~~~~ 231 (336)
...|+.|+|+|... ..+|+.|+|.|.++..+ +..++++
T Consensus 9 ~~~C~~C~GsG~~~---~~~C~~C~G~G~v~~~qG~~~~g~~ 47 (53)
T 2bx9_A 9 EVACPKCERAGEIE---GTPCPACSGKGVILTAQGYTLLDFI 47 (53)
T ss_dssp EEECTTTTTSSEET---TEECTTTTTSSEEECHHHHHHHHHH
T ss_pred cccCCCCcceeccC---CCCCccCCCCccEEEEecccHHHHH
Confidence 46788888888874 36788888888877655 4444433
No 53
>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A
Probab=97.06 E-value=0.00014 Score=49.40 Aligned_cols=28 Identities=32% Similarity=0.882 Sum_probs=18.0
Q ss_pred ecCCCCCCcceEEeeeeeecCCceEEee
Q 019721 235 STCSKCGGDGKIIIDHCRRCGGNGEVQS 262 (336)
Q Consensus 235 ~~C~~C~G~G~~~~~~C~~C~g~g~~~~ 262 (336)
.+|+.|+|+|.++.++|+.|+|.|.+..
T Consensus 10 ~~C~~C~GsG~~i~~~C~~C~G~G~v~~ 37 (53)
T 3lcz_A 10 TTCPNCNGSGREEPEPCPKCLGKGVILT 37 (53)
T ss_dssp EECTTTTTSCEETTEECTTTTTSSEEEC
T ss_pred ccCcCCcccccCCCCcCCCCCCcEEEEE
Confidence 5666666666666666666666665543
No 54
>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A
Probab=97.03 E-value=0.00019 Score=48.72 Aligned_cols=25 Identities=36% Similarity=1.038 Sum_probs=11.3
Q ss_pred eeCCCCCCCCccCCCCcccCCCCCCccE
Q 019721 192 ETCDSCGGTGAKSSNCIQSCKACWGRGG 219 (336)
Q Consensus 192 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~ 219 (336)
..|+.|+|+|.... .+|+.|+|+|.
T Consensus 10 ~~C~~C~GsG~~i~---~~C~~C~G~G~ 34 (53)
T 3lcz_A 10 TTCPNCNGSGREEP---EPCPKCLGKGV 34 (53)
T ss_dssp EECTTTTTSCEETT---EECTTTTTSSE
T ss_pred ccCcCCcccccCCC---CcCCCCCCcEE
Confidence 34555555554321 34444444443
No 55
>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*
Probab=96.79 E-value=0.00038 Score=47.16 Aligned_cols=28 Identities=29% Similarity=0.736 Sum_probs=18.3
Q ss_pred cccCCCCCCccEEEEeeecCCcceeeeecCCCCCCcceEE
Q 019721 208 IQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKII 247 (336)
Q Consensus 208 ~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~~ 247 (336)
..+|+.|+|+|.++. .+|+.|+|.|.++
T Consensus 9 ~~~C~~C~GsG~~~~------------~~C~~C~G~G~v~ 36 (53)
T 2bx9_A 9 EVACPKCERAGEIEG------------TPCPACSGKGVIL 36 (53)
T ss_dssp EEECTTTTTSSEETT------------EECTTTTTSSEEE
T ss_pred cccCCCCcceeccCC------------CCCccCCCCccEE
Confidence 356777777776531 5677777777655
No 56
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=91.80 E-value=0.092 Score=53.42 Aligned_cols=49 Identities=16% Similarity=0.180 Sum_probs=39.4
Q ss_pred cccccCcceecccCCCCCH--HHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHH
Q 019721 40 RAAGTDYYSTLNVRQNATL--QEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEV 95 (336)
Q Consensus 40 ~~~~~d~Y~iLgv~~~a~~--~eIk~ayr~la~~~hPd~~~~~~~~~~f~~i~~Ay~v 95 (336)
.....|||.+||++.++.. .+|++|||+||+..+++ .+++..+..|+.|
T Consensus 625 ~~~~~~~~~~lG~~~~~~~lr~~~~~ayr~la~~~~~~-------~~r~~lvd~a~~v 675 (681)
T 2pzi_A 625 KDNKASTNHILGFPFTSHGLRLGVEASLRSLARVAPTQ-------RHRYTLVDMANKV 675 (681)
T ss_dssp TSCCCSSSEETTEESSHHHHHHHHHHHHHHHHHHCSSH-------HHHHHHHHHHHHH
T ss_pred HccCCCCcccCCCCCChHHHHHHHHHHHHHHHHhCCCh-------HHHHHHHHHhccc
Confidence 4556789999999776655 67999999999965543 5789999999887
No 57
>2qkd_A Zinc finger protein ZPR1; helical hairpins, beta helix, anti-parrallel beta sheet, double straded anti-parallel beta helix, metal binding protein; 2.00A {Mus musculus}
Probab=46.66 E-value=25 Score=33.31 Aligned_cols=19 Identities=16% Similarity=0.289 Sum_probs=14.4
Q ss_pred EEEEeCCCCCCCcEEEEcc
Q 019721 266 MKVVIPPGVSNGATMQIRG 284 (336)
Q Consensus 266 l~V~Ip~G~~~G~~i~l~G 284 (336)
|.+.||||...|..-++.|
T Consensus 302 L~lei~pg~~~G~~TTVEG 320 (404)
T 2qkd_A 302 LEFELGMAVLGGKFTTLEG 320 (404)
T ss_dssp GTEEECTTTTCSEEEEHHH
T ss_pred eeEEecCCCCCceEEeHHH
Confidence 3688889988887777755
No 58
>2qkd_A Zinc finger protein ZPR1; helical hairpins, beta helix, anti-parrallel beta sheet, double straded anti-parallel beta helix, metal binding protein; 2.00A {Mus musculus}
Probab=45.55 E-value=35 Score=32.27 Aligned_cols=78 Identities=22% Similarity=0.362 Sum_probs=42.1
Q ss_pred CcccCCCCCCccEEEE-eeecC-Ccce-eeeecCCCCCCcceEEee-------------eeee--cCCceEEe------e
Q 019721 207 CIQSCKACWGRGGVLK-TQRTP-FGLI-SQVSTCSKCGGDGKIIID-------------HCRR--CGGNGEVQ------S 262 (336)
Q Consensus 207 ~~~~C~~C~G~G~~~~-~~~~~-~~~~-~~~~~C~~C~G~G~~~~~-------------~C~~--C~g~g~~~------~ 262 (336)
....|+.|+..|.... ...+| |+-+ .....|+.|+-+-.-+.. .... =-.+-++. .
T Consensus 11 ~~s~Cp~C~~~g~t~~~~~~IP~F~eVii~Sf~C~~CGyrn~ev~~~g~~~pkG~r~tL~V~~~~DLnr~VvKS~tati~ 90 (404)
T 2qkd_A 11 IESLCMNCYRNGTTRLLLTKIPFFREIIVSSFSCEHCGWNNTEIQSAGRIQDQGVRYTLTVRSQEDMNREVVKTDSATTR 90 (404)
T ss_dssp CEEECTTTSSEEEEEEEEEEETTTEEEEEEEEECTTTCCEEEEEEEEESSCSSEEEEEEEECSHHHHTCEEEECTTCEEE
T ss_pred ccccCCCCCCCceEEEEEEcCCCCceEEEEEEECCCCCCchheeeECcccCCCcEEEEEEECChhcccceEEEcCCcEEE
Confidence 3567888888776432 23455 3433 334789999876544321 0000 00000000 0
Q ss_pred eeEEEEEeCCCCCCCcEEEEcc
Q 019721 263 KRSMKVVIPPGVSNGATMQIRG 284 (336)
Q Consensus 263 ~~~l~V~Ip~G~~~G~~i~l~G 284 (336)
--+|.+.||||...|..-++.|
T Consensus 91 IPEL~~eI~pg~~~G~iTTVEG 112 (404)
T 2qkd_A 91 IPELDFEIPAFSQKGALTTVEG 112 (404)
T ss_dssp EGGGTEEECTTSSCCEEEEHHH
T ss_pred eeeeeEEecCccCCceEEeHHH
Confidence 1134688899998888777765
No 59
>1uzc_A Hypothetical protein FLJ21157; nuclear protein, structure, transcription, phosphopeptide recognition, RNA polymerase II carboxyl- terminal domain; NMR {Homo sapiens} SCOP: a.159.2.1 PDB: 2kzg_A 2lks_A 2l9v_A
Probab=34.06 E-value=16 Score=25.67 Aligned_cols=53 Identities=23% Similarity=0.387 Sum_probs=31.0
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHH--HHHHhch-hccccccccc
Q 019721 54 QNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISS--AYEVLSD-DEKRSVYDRF 108 (336)
Q Consensus 54 ~~a~~~eIk~ayr~la~~~hPd~~~~~~~~~~f~~i~~--Ay~vL~d-~~~r~~YD~~ 108 (336)
.-+|.+|.+++|++|....+-+... .=++....|.. -|.+|.+ .+++++|+.|
T Consensus 10 ~~~t~eea~~~F~~LL~e~~V~~~~--tWe~~~~~i~~DpRY~al~~~~eRk~~F~ey 65 (71)
T 1uzc_A 10 TWNTKEEAKQAFKELLKEKRVPSNA--SWEQAMKMIINDPRYSALAKLSEKKQAFNAY 65 (71)
T ss_dssp CCCSHHHHHHHHHHHHHHTTCCTTC--CHHHHHHHHHTSGGGGGCSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHcCcCCCC--CHHHHHHHHccCccccccCCHHHHHHHHHHH
Confidence 3579999999999999887643321 11111222222 4666665 3555566554
No 60
>3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=32.53 E-value=26 Score=25.35 Aligned_cols=53 Identities=19% Similarity=0.335 Sum_probs=27.4
Q ss_pred eeeCCCCCCCCccCCCCc--ccCCCCCCccEEEEeeecCCcceeeeecCCCCCCcceEE
Q 019721 191 FETCDSCGGTGAKSSNCI--QSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKII 247 (336)
Q Consensus 191 ~~~C~~C~G~G~~~~~~~--~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~~ 247 (336)
.+.|..|...|=...... ..|..|...|.+.+....+ .....|-.|...|++.
T Consensus 5 ~~~C~~Cg~~GH~~~~Cp~~~rcY~c~~~gh~~~~c~~p----~~~~~CYnCG~~GH~~ 59 (83)
T 3nyb_B 5 KVQCTLCKSKKHSKERCPSIWRAYILVDDNEKAKPKVLP----FHTIYCYNCGGKGHFG 59 (83)
T ss_dssp --CCSSSCCSSSCGGGCGGGTCCCCBC-----------------CCCBCSSSSCBSSCG
T ss_pred cCCCCCCCCCCCccccCCCcccccccccCCcccccccCC----CCCCeecccCCCCcCc
Confidence 467999988886654432 3688898888754322111 1235799999888754
No 61
>2cqn_A Formin-binding protein 3; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=32.49 E-value=28 Score=24.79 Aligned_cols=53 Identities=15% Similarity=0.426 Sum_probs=36.7
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCCCc---chHHHHHHHHHHHHHhch-hcccccccccC
Q 019721 56 ATLQEIKTSYRKLARKYHPDINKSP---GAEEKFKEISSAYEVLSD-DEKRSVYDRFG 109 (336)
Q Consensus 56 a~~~eIk~ayr~la~~~hPd~~~~~---~~~~~f~~i~~Ay~vL~d-~~~r~~YD~~G 109 (336)
.-+..++.+|+.+.+...|...... .+..+|..-. +|..+.+ .+++.+|+.|-
T Consensus 6 ~r~rrl~~~F~~mLk~~~p~I~~~s~We~vr~~~e~~~-~fkav~~E~eR~~lFeeYi 62 (77)
T 2cqn_A 6 SGMKRKESAFKSMLKQAAPPIELDAVWEDIRERFVKEP-AFEDITLESERKRIFKDFM 62 (77)
T ss_dssp CSHHHHHHHHHHHHHTCSSCCCTTCCHHHHHHHHTTSH-HHHTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHccCH-HHHhcCCHHHHHHHHHHHH
Confidence 3456788999998888878766532 3455555444 7998865 57778888764
No 62
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Probab=31.48 E-value=52 Score=29.18 Aligned_cols=33 Identities=30% Similarity=0.699 Sum_probs=19.9
Q ss_pred ccCCCCCCccEEEEeeecCCcceeeeecCCCCCCcce
Q 019721 209 QSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGK 245 (336)
Q Consensus 209 ~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~ 245 (336)
-.|..|+-...+. . ..+.+.....|+.|.++|.
T Consensus 135 f~C~~C~~~~~v~---~-~~~~~~~P~~Cp~C~~~~f 167 (279)
T 1ltl_A 135 FECRGCMRHHAVT---Q-STNMITEPSLCSECGGRSF 167 (279)
T ss_dssp EEETTTCCEEEEE---C-SSSSCCCCSCCTTTCCCCE
T ss_pred EEcCCCCCEEEEE---e-cCCcccCCCcCCCCCCCCc
Confidence 4899998553221 1 1233333468999999883
No 63
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Probab=30.16 E-value=2.3e+02 Score=24.79 Aligned_cols=30 Identities=23% Similarity=0.357 Sum_probs=19.7
Q ss_pred eeeCCCCCCCCccCC-----CCcccCCCCCCccEE
Q 019721 191 FETCDSCGGTGAKSS-----NCIQSCKACWGRGGV 220 (336)
Q Consensus 191 ~~~C~~C~G~G~~~~-----~~~~~C~~C~G~G~~ 220 (336)
.-.|..|+....... .....|+.|.++|..
T Consensus 134 ~f~C~~C~~~~~v~~~~~~~~~P~~Cp~C~~~~f~ 168 (279)
T 1ltl_A 134 VFECRGCMRHHAVTQSTNMITEPSLCSECGGRSFR 168 (279)
T ss_dssp EEEETTTCCEEEEECSSSSCCCCSCCTTTCCCCEE
T ss_pred EEEcCCCCCEEEEEecCCcccCCCcCCCCCCCCcE
Confidence 457999975543221 235689999999843
No 64
>3u5e_X 60S ribosomal protein L25; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_K 2ww9_K 3izc_X 3izs_X 2wwb_K 3o5h_W 3o58_W 3u5i_X 4b6a_X 1s1i_T 3jyw_T
Probab=25.80 E-value=52 Score=26.38 Aligned_cols=10 Identities=20% Similarity=0.395 Sum_probs=5.3
Q ss_pred cccCcceecc
Q 019721 42 AGTDYYSTLN 51 (336)
Q Consensus 42 ~~~d~Y~iLg 51 (336)
...|+|+|+-
T Consensus 55 ~kld~~~IIk 64 (142)
T 3u5e_X 55 NRLDSYKVIE 64 (142)
T ss_dssp CTTCHHHHEE
T ss_pred CCCCHHHhhh
Confidence 3446666554
No 65
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=25.31 E-value=67 Score=21.04 Aligned_cols=15 Identities=13% Similarity=0.262 Sum_probs=8.1
Q ss_pred ccCCCCCCccEEEEe
Q 019721 209 QSCKACWGRGGVLKT 223 (336)
Q Consensus 209 ~~C~~C~G~G~~~~~ 223 (336)
.+|+.|+.....+.+
T Consensus 16 ~~Cp~Cg~~~~~~~q 30 (57)
T 1qyp_A 16 ITCPKCGNDTAYWWE 30 (57)
T ss_dssp CCCTTTCCSEEEEEE
T ss_pred eECCCCCCCEEEEEE
Confidence 456666664444443
No 66
>1tfi_A Transcriptional elongation factor SII; transcription regulation; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=23.98 E-value=91 Score=20.05 Aligned_cols=34 Identities=18% Similarity=0.507 Sum_probs=17.6
Q ss_pred cccCCCCCCccEEEEeeecCCc--ceeeeecCCCCC
Q 019721 208 IQSCKACWGRGGVLKTQRTPFG--LISQVSTCSKCG 241 (336)
Q Consensus 208 ~~~C~~C~G~G~~~~~~~~~~~--~~~~~~~C~~C~ 241 (336)
...|+.|+....+..+.++... .+.....|..|+
T Consensus 9 ~~~Cp~Cg~~~a~f~q~Q~RsaDE~mT~Fy~C~~Cg 44 (50)
T 1tfi_A 9 LFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECG 44 (50)
T ss_dssp CSCCSSSCSSCEEEEEECSSSSSSCCEEEEEESSSC
T ss_pred ccCCCCCCCCEEEEEEecCcCCCCCceEEEEcCCCC
Confidence 3468888777766554433211 233334565553
No 67
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=23.71 E-value=45 Score=22.53 Aligned_cols=48 Identities=13% Similarity=0.316 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHhCCCCCCCcchHHHHHHH-H--HHHHHhch-hc-cccccccc
Q 019721 59 QEIKTSYRKLARKYHPDINKSPGAEEKFKEI-S--SAYEVLSD-DE-KRSVYDRF 108 (336)
Q Consensus 59 ~eIk~ayr~la~~~hPd~~~~~~~~~~f~~i-~--~Ay~vL~d-~~-~r~~YD~~ 108 (336)
+|..+||.+|.+...=|.+ -.=++..+.| . --|.+|.| |. ++++|+.|
T Consensus 3 eEae~aF~~lL~~~~V~s~--wsweqamr~i~i~DPrY~al~d~~~eRK~~Fe~Y 55 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDST--WSFSRIISELGTRDPRYWMVDDDPLWKKEMFEKY 55 (59)
T ss_dssp THHHHHHHHHHHHTTCCSS--CCHHHHHHHHHHHCTHHHHSCCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCC--CcHHHHHHHhccCCCccccccCCHHHHHHHHHHH
Confidence 6788999999887654432 2234455666 3 37999997 54 66778776
No 68
>3iz5_X 60S ribosomal protein L23A (L23P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_X 2go5_4 2j37_4
Probab=20.09 E-value=62 Score=26.22 Aligned_cols=11 Identities=27% Similarity=0.347 Sum_probs=6.6
Q ss_pred cccCcceeccc
Q 019721 42 AGTDYYSTLNV 52 (336)
Q Consensus 42 ~~~d~Y~iLgv 52 (336)
...|+|+|+--
T Consensus 65 ~kmd~~~IIk~ 75 (152)
T 3iz5_X 65 NKLDQYQILKY 75 (152)
T ss_dssp CCCCCCCSEEE
T ss_pred CcCcHHHHHhh
Confidence 44577777643
Done!