BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 019724
         (336 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1WFJ|A Chain A, C2 Domain-Containing Protein From Putative Elicitor-
           Responsive Gene
          Length = 136

 Score = 41.2 bits (95), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/130 (24%), Positives = 55/130 (42%), Gaps = 13/130 (10%)

Query: 6   LDITVVSASDLKTAGMFSKMNVYAVVTIFGESQTTSVARDCGVRPTWNHQMRFNIDEAAA 65
           L++ +VSA  L+ A   + M+ Y  +T   + Q ++VA   G  P WN    F + E   
Sbjct: 12  LEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEG-- 69

Query: 66  MQNNLTIVYSIRSTGGCFGNSD--LGEVFVPVKEMLLRSNGDDDKPMSYNITTPGGRAKG 123
                T     +      G  D  +GE  +P++ + +  +     P +YN+       KG
Sbjct: 70  -----TTELKAKIFDKDVGTEDDAVGEATIPLEPVFVEGS---IPPTAYNVVK-DEEYKG 120

Query: 124 VLNVSYKFGP 133
            + V+  F P
Sbjct: 121 EIWVALSFKP 130


>pdb|3JZY|A Chain A, Crystal Structure Of Human Intersectin 2 C2 Domain
          Length = 510

 Score = 30.8 bits (68), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 29/110 (26%), Positives = 50/110 (45%), Gaps = 9/110 (8%)

Query: 6   LDITVVSASDLKTAGMFSKMNVYAVVTIFGESQTTSVARDCGVRPTWNHQMRFNIDEAAA 65
           L + V+ A++LK      K N Y  +++  +S TT   +D  + P WN   +F I +   
Sbjct: 389 LMVHVIEATELKACKPNGKSNPYCEISMGSQSYTTRTIQD-TLNPKWNFNCQFFIKD--L 445

Query: 66  MQNNLTIVYSIRSTGGCFGNSD-LGEVFVPVKEMLLRSNGDDDKPMSYNI 114
            Q+ L +    R     F   D LG   +PV +  +R+  +   PM+  +
Sbjct: 446 YQDVLCLTLFDRDQ---FSPDDFLGRTEIPVAK--IRTEQESKGPMTRRL 490


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.315    0.134    0.403 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,302,479
Number of Sequences: 62578
Number of extensions: 180295
Number of successful extensions: 272
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 271
Number of HSP's gapped (non-prelim): 2
length of query: 336
length of database: 14,973,337
effective HSP length: 99
effective length of query: 237
effective length of database: 8,778,115
effective search space: 2080413255
effective search space used: 2080413255
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 52 (24.6 bits)