BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 019724
         (336 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|O15162|PLS1_HUMAN Phospholipid scramblase 1 OS=Homo sapiens GN=PLSCR1 PE=1 SV=1
          Length = 318

 Score = 33.1 bits (74), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 38/113 (33%), Positives = 47/113 (41%), Gaps = 20/113 (17%)

Query: 141 NNNNNNNNANQSNDNPGMAYAPQPPPPMPQGYANPTAYPAPQKDVYPPPPDAHKAALAYP 200
           +  N+  NA+    N  + Y PQ PP   QG    + YP PQ   YPPPP  H       
Sbjct: 2   DKQNSQMNASHPETNLPVGYPPQYPPTAFQGPPGYSGYPGPQVS-YPPPPAGHSG----- 55

Query: 201 APGYPPQPQAYPLPGG--YPPPGY-----AAGAPAPPHPGGYAPVQGPGGMNY 246
                P P  +P+P    Y  P Y     AAG P  P P    P+  P G+ Y
Sbjct: 56  -----PGPAGFPVPNQPVYNQPVYNQPVGAAGVPWMPAPQ--PPLNCPPGLEY 101


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.311    0.133    0.408 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 165,139,108
Number of Sequences: 539616
Number of extensions: 9653926
Number of successful extensions: 189843
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 2033
Number of HSP's successfully gapped in prelim test: 3052
Number of HSP's that attempted gapping in prelim test: 53137
Number of HSP's gapped (non-prelim): 65817
length of query: 336
length of database: 191,569,459
effective HSP length: 118
effective length of query: 218
effective length of database: 127,894,771
effective search space: 27881060078
effective search space used: 27881060078
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 61 (28.1 bits)