Query 019724
Match_columns 336
No_of_seqs 402 out of 1585
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 04:02:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019724.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019724hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd04016 C2_Tollip C2 domain pr 99.9 6.6E-24 1.4E-28 174.1 14.9 119 3-131 1-121 (121)
2 cd08681 C2_fungal_Inn1p-like C 99.9 5E-22 1.1E-26 161.9 13.1 118 4-131 1-118 (118)
3 cd04019 C2C_MCTP_PRT_plant C2 99.9 1.6E-21 3.5E-26 166.0 14.5 129 5-137 1-137 (150)
4 cd04022 C2A_MCTP_PRT_plant C2 99.9 2.4E-21 5.1E-26 160.3 14.3 123 5-132 1-126 (127)
5 cd08682 C2_Rab11-FIP_classI C2 99.9 1.7E-21 3.8E-26 160.8 12.9 122 6-130 1-126 (126)
6 cd04051 C2_SRC2_like C2 domain 99.9 3.2E-21 7E-26 158.8 11.9 123 5-127 1-125 (125)
7 cd04042 C2A_MCTP_PRT C2 domain 99.9 8.7E-21 1.9E-25 155.5 14.3 119 5-133 1-121 (121)
8 cd08375 C2_Intersectin C2 doma 99.9 1.6E-20 3.4E-25 157.4 14.5 121 3-131 14-135 (136)
9 cd04033 C2_NEDD4_NEDD4L C2 dom 99.8 5.1E-20 1.1E-24 153.2 15.0 122 5-132 1-133 (133)
10 cd08377 C2C_MCTP_PRT C2 domain 99.8 4.9E-20 1.1E-24 150.2 14.2 117 4-132 1-119 (119)
11 cd08378 C2B_MCTP_PRT_plant C2 99.8 3.9E-20 8.4E-25 151.9 13.4 117 6-132 2-120 (121)
12 cd08379 C2D_MCTP_PRT_plant C2 99.8 2.7E-20 5.8E-25 153.8 12.3 113 5-127 1-125 (126)
13 cd08401 C2A_RasA2_RasA3 C2 dom 99.8 4.4E-20 9.6E-25 151.6 13.4 117 5-131 1-121 (121)
14 cd04046 C2_Calpain C2 domain p 99.8 4.2E-20 9.2E-25 152.7 13.2 119 3-134 2-124 (126)
15 cd04024 C2A_Synaptotagmin-like 99.8 5.1E-20 1.1E-24 151.9 13.5 122 4-131 1-128 (128)
16 cd08678 C2_C21orf25-like C2 do 99.8 8.1E-20 1.8E-24 150.9 14.0 119 6-136 1-124 (126)
17 cd08376 C2B_MCTP_PRT C2 domain 99.8 7.9E-20 1.7E-24 148.4 13.7 115 5-132 1-115 (116)
18 cd04044 C2A_Tricalbin-like C2 99.8 1.1E-19 2.3E-24 149.0 13.8 121 3-133 1-124 (124)
19 cd04025 C2B_RasA1_RasA4 C2 dom 99.8 8.8E-20 1.9E-24 149.9 13.2 117 5-130 1-123 (123)
20 KOG1030 Predicted Ca2+-depende 99.8 4E-20 8.8E-25 156.3 10.6 94 1-100 3-96 (168)
21 cd04054 C2A_Rasal1_RasA4 C2 do 99.8 2.7E-19 5.9E-24 146.8 14.0 118 5-131 1-121 (121)
22 cd08677 C2A_Synaptotagmin-13 C 99.8 1.1E-19 2.3E-24 147.7 11.3 93 2-100 12-108 (118)
23 cd04036 C2_cPLA2 C2 domain pre 99.8 2.3E-19 5.1E-24 146.6 12.8 114 6-132 2-118 (119)
24 cd08400 C2_Ras_p21A1 C2 domain 99.8 3.6E-19 7.9E-24 147.1 13.8 119 3-134 3-125 (126)
25 cd04017 C2D_Ferlin C2 domain f 99.8 9E-19 1.9E-23 146.4 15.6 127 5-134 2-134 (135)
26 cd08391 C2A_C2C_Synaptotagmin_ 99.8 3.6E-19 7.8E-24 145.3 12.8 115 4-131 1-121 (121)
27 cd04014 C2_PKC_epsilon C2 doma 99.8 7.1E-19 1.5E-23 146.4 14.7 119 1-133 1-130 (132)
28 cd04015 C2_plant_PLD C2 domain 99.8 7.9E-19 1.7E-23 150.8 14.9 120 2-132 5-158 (158)
29 cd08395 C2C_Munc13 C2 domain t 99.8 3.1E-19 6.7E-24 146.2 11.0 105 5-116 1-112 (120)
30 cd08382 C2_Smurf-like C2 domai 99.8 8.7E-19 1.9E-23 144.2 13.2 116 5-130 1-123 (123)
31 cd08381 C2B_PI3K_class_II C2 d 99.8 6.2E-19 1.3E-23 145.0 12.0 94 3-100 12-111 (122)
32 cd04027 C2B_Munc13 C2 domain s 99.8 1.8E-18 3.9E-23 143.1 13.6 113 5-129 2-127 (127)
33 cd04010 C2B_RasA3 C2 domain se 99.8 8.7E-19 1.9E-23 148.7 11.8 106 5-116 1-122 (148)
34 cd08373 C2A_Ferlin C2 domain f 99.8 2.4E-18 5.2E-23 142.2 14.1 120 10-138 2-122 (127)
35 cd08392 C2A_SLP-3 C2 domain fi 99.8 1.5E-18 3.3E-23 143.9 12.6 108 3-114 14-127 (128)
36 cd04039 C2_PSD C2 domain prese 99.8 9.6E-19 2.1E-23 140.8 11.0 93 4-100 1-97 (108)
37 cd04049 C2_putative_Elicitor-r 99.8 2.5E-18 5.4E-23 141.4 12.1 108 4-116 1-108 (124)
38 cd04041 C2A_fungal C2 domain f 99.8 2.1E-18 4.5E-23 139.4 11.2 95 4-100 1-99 (111)
39 cd04021 C2_E3_ubiquitin_ligase 99.8 6.5E-18 1.4E-22 139.4 14.1 118 4-129 2-124 (125)
40 cd08394 C2A_Munc13 C2 domain f 99.8 5.1E-18 1.1E-22 139.2 12.2 100 4-116 2-101 (127)
41 cd04028 C2B_RIM1alpha C2 domai 99.8 5.4E-18 1.2E-22 143.4 12.6 105 3-117 28-139 (146)
42 cd08691 C2_NEDL1-like C2 domai 99.8 1.1E-17 2.3E-22 140.3 14.2 116 5-129 2-136 (137)
43 cd04050 C2B_Synaptotagmin-like 99.8 3.1E-18 6.6E-23 137.0 10.5 102 5-116 1-102 (105)
44 cd08393 C2A_SLP-1_2 C2 domain 99.8 4.7E-18 1E-22 140.3 11.5 105 3-114 14-124 (125)
45 cd04043 C2_Munc13_fungal C2 do 99.8 1.3E-17 2.8E-22 137.3 13.8 119 5-134 2-123 (126)
46 cd04011 C2B_Ferlin C2 domain s 99.8 7.6E-18 1.6E-22 136.0 12.0 105 5-115 5-109 (111)
47 cd04029 C2A_SLP-4_5 C2 domain 99.8 8.9E-18 1.9E-22 138.7 12.6 96 2-100 13-114 (125)
48 cd08388 C2A_Synaptotagmin-4-11 99.8 1.2E-17 2.5E-22 138.5 12.7 107 3-114 15-126 (128)
49 cd08688 C2_KIAA0528-like C2 do 99.8 8.5E-18 1.8E-22 135.6 11.2 106 6-115 1-108 (110)
50 cd08387 C2A_Synaptotagmin-8 C2 99.8 1.3E-17 2.7E-22 137.2 12.4 106 3-115 15-123 (124)
51 cd08685 C2_RGS-like C2 domain 99.7 9E-18 2E-22 137.5 10.9 93 3-100 11-109 (119)
52 cd08385 C2A_Synaptotagmin-1-5- 99.7 1.7E-17 3.6E-22 136.4 12.6 106 3-115 15-123 (124)
53 cd08680 C2_Kibra C2 domain fou 99.7 9.6E-18 2.1E-22 138.2 10.9 95 3-100 13-113 (124)
54 cd04045 C2C_Tricalbin-like C2 99.7 2.1E-17 4.5E-22 135.5 12.7 103 4-117 1-104 (120)
55 cd04040 C2D_Tricalbin-like C2 99.7 1.6E-17 3.4E-22 134.6 11.7 113 6-127 1-114 (115)
56 cd00275 C2_PLC_like C2 domain 99.7 3.4E-17 7.5E-22 134.8 13.9 115 5-131 3-127 (128)
57 cd04009 C2B_Munc13-like C2 dom 99.7 1.3E-17 2.8E-22 139.1 10.5 97 3-100 15-118 (133)
58 cd04031 C2A_RIM1alpha C2 domai 99.7 2.3E-17 5.1E-22 135.5 11.8 105 3-114 15-124 (125)
59 cd04030 C2C_KIAA1228 C2 domain 99.7 4.3E-17 9.3E-22 134.4 12.7 105 3-114 15-126 (127)
60 cd04018 C2C_Ferlin C2 domain t 99.7 2.8E-17 6E-22 139.9 11.5 92 5-100 1-106 (151)
61 cd08386 C2A_Synaptotagmin-7 C2 99.7 4.4E-17 9.6E-22 134.0 12.2 107 3-115 15-124 (125)
62 cd08521 C2A_SLP C2 domain firs 99.7 5.2E-17 1.1E-21 133.0 11.9 95 3-100 13-113 (123)
63 cd04032 C2_Perforin C2 domain 99.7 3.5E-17 7.6E-22 135.3 10.8 93 3-100 27-119 (127)
64 cd08690 C2_Freud-1 C2 domain f 99.7 1.4E-16 3E-21 135.9 14.2 130 5-139 3-144 (155)
65 cd04038 C2_ArfGAP C2 domain pr 99.7 6E-17 1.3E-21 137.1 11.0 90 4-100 2-91 (145)
66 cd08389 C2A_Synaptotagmin-14_1 99.7 5.7E-17 1.2E-21 133.7 10.4 104 3-114 15-122 (124)
67 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.7 8.6E-17 1.9E-21 138.7 11.7 96 3-100 26-126 (162)
68 cd08390 C2A_Synaptotagmin-15-1 99.7 2E-16 4.4E-21 129.6 13.1 105 3-114 13-121 (123)
69 cd04037 C2E_Ferlin C2 domain f 99.7 9.4E-17 2E-21 132.3 10.7 118 5-133 1-120 (124)
70 cd08407 C2B_Synaptotagmin-13 C 99.7 1E-16 2.2E-21 134.5 10.7 92 3-97 14-112 (138)
71 cd08384 C2B_Rabphilin_Doc2 C2 99.7 8.7E-17 1.9E-21 133.8 10.1 105 3-116 12-121 (133)
72 cd08406 C2B_Synaptotagmin-12 C 99.7 1.2E-16 2.5E-21 133.9 10.8 92 3-97 14-110 (136)
73 cd08383 C2A_RasGAP C2 domain ( 99.7 2.5E-16 5.4E-21 127.8 12.0 113 6-131 2-117 (117)
74 cd08404 C2B_Synaptotagmin-4 C2 99.7 1.1E-16 2.3E-21 133.9 9.7 109 3-120 14-127 (136)
75 cd08408 C2B_Synaptotagmin-14_1 99.7 3.7E-16 8E-21 131.2 11.3 92 3-97 14-111 (138)
76 cd08675 C2B_RasGAP C2 domain s 99.7 3.4E-16 7.4E-21 131.3 11.0 106 6-117 1-121 (137)
77 cd04052 C2B_Tricalbin-like C2 99.7 4.4E-16 9.5E-21 125.8 10.4 103 20-134 8-111 (111)
78 cd04013 C2_SynGAP_like C2 doma 99.7 1.1E-15 2.5E-20 129.0 13.1 117 4-135 11-142 (146)
79 cd08676 C2A_Munc13-like C2 dom 99.7 5.3E-16 1.1E-20 132.3 11.1 90 2-100 26-144 (153)
80 cd08402 C2B_Synaptotagmin-1 C2 99.7 4.6E-16 1E-20 130.0 10.6 92 3-97 14-110 (136)
81 cd04026 C2_PKC_alpha_gamma C2 99.7 6.2E-16 1.3E-20 128.3 11.2 105 3-116 12-121 (131)
82 cd08410 C2B_Synaptotagmin-17 C 99.7 6.1E-16 1.3E-20 129.3 11.1 90 3-95 13-107 (135)
83 KOG0696 Serine/threonine prote 99.7 4E-17 8.8E-22 154.9 4.0 106 2-116 178-288 (683)
84 cd04048 C2A_Copine C2 domain f 99.7 1E-15 2.3E-20 125.2 11.8 99 8-115 4-113 (120)
85 cd08405 C2B_Synaptotagmin-7 C2 99.7 5.3E-16 1.2E-20 129.7 10.2 93 3-98 14-111 (136)
86 cd08403 C2B_Synaptotagmin-3-5- 99.7 6.1E-16 1.3E-20 129.0 10.5 92 2-96 12-108 (134)
87 cd08692 C2B_Tac2-N C2 domain s 99.7 6.8E-16 1.5E-20 128.3 10.6 93 3-98 13-110 (135)
88 PLN03008 Phospholipase D delta 99.7 8.2E-16 1.8E-20 158.1 12.8 126 2-138 12-183 (868)
89 cd04035 C2A_Rabphilin_Doc2 C2 99.6 1.9E-15 4.1E-20 124.0 11.8 95 3-100 14-113 (123)
90 cd08409 C2B_Synaptotagmin-15 C 99.6 1.2E-15 2.7E-20 127.9 10.8 93 3-99 14-111 (137)
91 cd04047 C2B_Copine C2 domain s 99.6 3.4E-15 7.4E-20 120.0 11.9 92 7-100 3-100 (110)
92 cd00276 C2B_Synaptotagmin C2 d 99.6 2.8E-15 6E-20 124.4 11.2 107 2-117 12-123 (134)
93 KOG1028 Ca2+-dependent phospho 99.6 3.3E-15 7.1E-20 146.9 13.4 125 3-134 166-296 (421)
94 cd08686 C2_ABR C2 domain in th 99.6 6.3E-15 1.4E-19 119.5 12.0 80 6-97 1-92 (118)
95 PLN03200 cellulose synthase-in 99.6 6.2E-15 1.4E-19 163.8 10.7 119 3-133 1979-2101(2102)
96 KOG1011 Neurotransmitter relea 99.6 4.5E-15 9.8E-20 146.3 6.8 121 4-136 295-428 (1283)
97 PF00168 C2: C2 domain; Inter 99.6 3.8E-14 8.3E-19 107.2 10.2 82 6-92 1-85 (85)
98 KOG2059 Ras GTPase-activating 99.4 2.5E-13 5.4E-18 135.6 9.5 126 4-138 5-131 (800)
99 PLN02223 phosphoinositide phos 99.4 2.2E-12 4.8E-17 128.1 13.1 117 3-131 408-536 (537)
100 cd08374 C2F_Ferlin C2 domain s 99.4 2.6E-12 5.6E-17 106.8 10.9 95 5-100 1-123 (133)
101 smart00239 C2 Protein kinase C 99.4 2.8E-12 6E-17 99.1 10.4 91 5-100 1-94 (101)
102 cd00030 C2 C2 domain. The C2 d 99.3 7.3E-12 1.6E-16 96.1 10.0 89 6-99 1-90 (102)
103 COG5038 Ca2+-dependent lipid-b 99.3 5.3E-12 1.1E-16 132.3 11.8 128 2-139 434-564 (1227)
104 PLN02952 phosphoinositide phos 99.3 9.7E-12 2.1E-16 125.8 13.1 118 3-132 469-597 (599)
105 PLN02270 phospholipase D alpha 99.3 1.5E-11 3.2E-16 126.9 13.1 124 3-136 7-152 (808)
106 KOG1028 Ca2+-dependent phospho 99.3 1E-11 2.3E-16 122.2 10.3 92 3-97 297-393 (421)
107 KOG1328 Synaptic vesicle prote 99.3 5.3E-13 1.1E-17 133.3 1.0 124 7-138 117-307 (1103)
108 cd08689 C2_fungal_Pkc1p C2 dom 99.3 6.2E-12 1.3E-16 99.1 6.6 84 6-100 1-88 (109)
109 KOG0169 Phosphoinositide-speci 99.2 3.8E-11 8.2E-16 121.7 11.6 117 5-132 617-744 (746)
110 COG5038 Ca2+-dependent lipid-b 99.2 1.6E-11 3.5E-16 128.7 8.6 127 3-138 1039-1167(1227)
111 PLN02230 phosphoinositide phos 99.2 5.1E-11 1.1E-15 120.4 11.5 117 3-131 468-597 (598)
112 PLN02222 phosphoinositide phos 99.2 1.6E-10 3.5E-15 116.7 13.4 117 3-131 451-580 (581)
113 PLN02228 Phosphoinositide phos 99.2 2.2E-10 4.8E-15 115.4 13.7 120 4-135 431-564 (567)
114 KOG1264 Phospholipase C [Lipid 99.0 1E-09 2.2E-14 111.3 10.5 120 4-136 1065-1193(1267)
115 KOG1328 Synaptic vesicle prote 98.9 3.4E-10 7.3E-15 113.6 1.7 97 3-100 946-1049(1103)
116 KOG1031 Predicted Ca2+-depende 98.9 2.6E-09 5.7E-14 105.1 7.2 129 3-134 2-138 (1169)
117 PLN02352 phospholipase D epsil 98.8 3.6E-08 7.9E-13 101.9 11.2 120 2-137 8-135 (758)
118 KOG1013 Synaptic vesicle prote 98.7 2.6E-09 5.7E-14 99.1 0.0 130 2-133 91-230 (362)
119 KOG2059 Ras GTPase-activating 98.7 3E-08 6.5E-13 99.8 6.5 122 11-136 138-280 (800)
120 KOG0905 Phosphoinositide 3-kin 98.3 4.8E-07 1E-11 95.4 5.0 106 3-115 1523-1634(1639)
121 KOG3837 Uncharacterized conser 98.3 6.2E-07 1.3E-11 85.7 3.8 129 3-136 366-507 (523)
122 KOG1011 Neurotransmitter relea 98.2 2.7E-06 5.8E-11 85.2 6.4 105 4-116 1125-1237(1283)
123 KOG1013 Synaptic vesicle prote 98.1 4E-06 8.8E-11 78.2 5.2 88 4-94 233-325 (362)
124 cd08683 C2_C2cd3 C2 domain fou 98.1 9.9E-06 2.1E-10 66.2 6.2 98 6-104 1-136 (143)
125 KOG1327 Copine [Signal transdu 98.0 1.1E-05 2.3E-10 80.4 7.1 90 9-100 141-236 (529)
126 KOG1326 Membrane-associated pr 98.0 3E-06 6.4E-11 88.5 2.8 88 5-97 614-703 (1105)
127 PLN02964 phosphatidylserine de 98.0 9.3E-06 2E-10 83.5 6.1 86 3-100 53-139 (644)
128 KOG1265 Phospholipase C [Lipid 97.9 3.5E-05 7.7E-10 79.7 8.3 109 4-131 703-822 (1189)
129 cd08684 C2A_Tac2-N C2 domain f 97.9 1.5E-05 3.2E-10 60.9 3.9 90 6-100 1-94 (103)
130 PF15627 CEP76-C2: CEP76 C2 do 97.7 0.00038 8.3E-09 59.2 10.8 130 3-135 8-153 (156)
131 PF10358 NT-C2: N-terminal C2 97.7 0.0014 2.9E-08 54.9 13.7 125 5-136 8-139 (143)
132 KOG1326 Membrane-associated pr 97.6 2.2E-05 4.7E-10 82.3 1.0 124 6-136 208-336 (1105)
133 PF12416 DUF3668: Cep120 prote 97.5 0.0021 4.5E-08 61.7 13.3 126 6-137 2-137 (340)
134 cd08693 C2_PI3K_class_I_beta_d 97.5 0.00083 1.8E-08 58.5 9.3 91 3-97 7-119 (173)
135 cd08398 C2_PI3K_class_I_alpha 97.4 0.0013 2.9E-08 56.3 9.5 89 3-97 7-105 (158)
136 KOG2060 Rab3 effector RIM1 and 97.2 0.00036 7.7E-09 66.5 3.9 105 3-116 268-379 (405)
137 cd08380 C2_PI3K_like C2 domain 97.1 0.0031 6.8E-08 53.8 9.2 91 4-97 8-106 (156)
138 cd04012 C2A_PI3K_class_II C2 d 97.1 0.0022 4.8E-08 55.7 7.7 94 3-97 7-118 (171)
139 cd08687 C2_PKN-like C2 domain 97.0 0.005 1.1E-07 47.4 8.4 84 24-131 8-92 (98)
140 cd08399 C2_PI3K_class_I_gamma 97.0 0.008 1.7E-07 52.5 10.5 73 4-79 10-87 (178)
141 PF11618 DUF3250: Protein of u 97.0 0.0027 5.9E-08 50.8 6.8 100 28-132 2-105 (107)
142 KOG1452 Predicted Rho GTPase-a 96.7 0.0034 7.3E-08 58.7 6.2 116 3-133 50-168 (442)
143 cd08397 C2_PI3K_class_III C2 d 96.4 0.011 2.4E-07 50.8 6.9 73 23-97 28-106 (159)
144 KOG1327 Copine [Signal transdu 96.3 0.01 2.3E-07 59.5 6.8 58 38-100 43-104 (529)
145 PF00792 PI3K_C2: Phosphoinosi 96.1 0.064 1.4E-06 44.9 10.2 59 39-98 23-85 (142)
146 cd08695 C2_Dock-B C2 domains f 96.1 0.069 1.5E-06 47.0 10.4 57 38-97 55-113 (189)
147 PF14429 DOCK-C2: C2 domain in 96.1 0.091 2E-06 46.0 11.1 57 38-97 61-120 (184)
148 cd08694 C2_Dock-A C2 domains f 96.0 0.084 1.8E-06 46.7 10.7 56 38-96 55-114 (196)
149 PF15625 CC2D2AN-C2: CC2D2A N- 95.5 0.17 3.8E-06 43.7 10.5 72 23-100 35-108 (168)
150 smart00142 PI3K_C2 Phosphoinos 95.0 0.13 2.8E-06 40.5 7.3 72 6-79 13-90 (100)
151 cd08679 C2_DOCK180_related C2 94.9 0.37 8.1E-06 42.0 10.9 56 38-97 55-115 (178)
152 KOG1924 RhoA GTPase effector D 94.5 0.24 5.2E-06 51.7 9.5 16 46-61 440-455 (1102)
153 KOG1924 RhoA GTPase effector D 93.4 0.41 8.8E-06 50.1 8.9 9 92-100 453-461 (1102)
154 PTZ00447 apical membrane antig 93.0 1 2.2E-05 43.0 10.3 97 24-130 73-171 (508)
155 PF06219 DUF1005: Protein of u 92.6 1.1 2.4E-05 43.9 10.1 108 24-134 35-169 (460)
156 cd08697 C2_Dock-D C2 domains f 91.7 2.3 5E-05 37.4 10.4 57 38-97 58-123 (185)
157 PF14909 SPATA6: Spermatogenes 91.0 2.6 5.6E-05 35.3 9.4 91 5-100 3-101 (140)
158 cd08696 C2_Dock-C C2 domains f 90.8 3.2 7E-05 36.3 10.4 57 38-97 56-118 (179)
159 PF09849 DUF2076: Uncharacteri 90.8 0.95 2.1E-05 41.6 7.3 24 287-310 138-161 (247)
160 PF14186 Aida_C2: Cytoskeletal 88.6 1.1 2.4E-05 37.8 5.6 91 5-100 14-114 (147)
161 KOG1329 Phospholipase D1 [Lipi 85.4 1.7 3.7E-05 46.4 5.9 101 25-135 138-243 (887)
162 PF12416 DUF3668: Cep120 prote 84.9 13 0.00027 36.0 11.2 90 5-100 193-295 (340)
163 smart00157 PRP Major prion pro 84.4 3.5 7.5E-05 36.0 6.4 30 281-310 81-110 (217)
164 PF14924 DUF4497: Protein of u 82.7 3.5 7.7E-05 33.0 5.6 80 55-134 12-106 (112)
165 KOG3543 Ca2+-dependent activat 82.4 7.2 0.00016 40.3 8.6 82 5-95 342-426 (1218)
166 KOG0694 Serine/threonine prote 80.8 0.43 9.4E-06 49.3 -0.5 97 24-135 27-124 (694)
167 PF07162 B9-C2: Ciliary basal 79.9 26 0.00057 30.0 10.5 81 6-93 4-99 (168)
168 KOG2419 Phosphatidylserine dec 65.5 0.4 8.6E-06 49.1 -4.9 37 23-61 303-339 (975)
169 KOG4269 Rac GTPase-activating 64.3 3.4 7.4E-05 44.1 1.4 65 3-79 758-827 (1112)
170 KOG0904 Phosphatidylinositol 3 64.0 17 0.00036 39.2 6.2 71 4-79 343-421 (1076)
171 COG4395 Uncharacterized protei 61.8 6.2 0.00013 36.9 2.4 24 285-309 28-51 (281)
172 COG3105 Uncharacterized protei 58.2 9.1 0.0002 31.5 2.5 19 292-310 10-28 (138)
173 PF10409 PTEN_C2: C2 domain of 57.1 1E+02 0.0022 24.9 9.1 90 4-99 4-98 (134)
174 cd05701 S1_Rrp5_repeat_hs10 S1 56.1 17 0.00037 26.2 3.3 47 26-79 13-59 (69)
175 PF12732 YtxH: YtxH-like prote 54.8 10 0.00022 27.9 2.1 19 291-309 3-21 (74)
176 KOG0906 Phosphatidylinositol 3 50.6 14 0.0003 38.5 3.0 46 50-96 77-122 (843)
177 PRK10404 hypothetical protein; 49.9 15 0.00032 29.0 2.5 16 293-308 84-99 (101)
178 KOG0905 Phosphoinositide 3-kin 46.2 19 0.00041 40.1 3.3 95 4-99 635-750 (1639)
179 COG4575 ElaB Uncharacterized c 45.5 19 0.00042 28.5 2.5 16 293-308 87-102 (104)
180 PF05957 DUF883: Bacterial pro 45.2 20 0.00043 27.6 2.5 17 292-308 76-92 (94)
181 COG3416 Uncharacterized protei 43.5 22 0.00047 31.8 2.7 25 288-312 140-164 (233)
182 KOG4027 Uncharacterized conser 41.3 2.3E+02 0.005 24.4 9.0 47 49-96 63-109 (187)
183 COG3763 Uncharacterized protei 41.2 30 0.00065 25.3 2.7 18 292-309 9-26 (71)
184 PF15084 DUF4550: Domain of un 40.4 63 0.0014 25.4 4.6 30 50-79 52-82 (99)
185 PF03672 UPF0154: Uncharacteri 39.2 31 0.00068 24.9 2.5 18 292-309 2-19 (64)
186 PRK10132 hypothetical protein; 38.4 29 0.00062 27.8 2.5 16 293-308 90-105 (108)
187 COG4395 Uncharacterized protei 36.3 25 0.00054 32.9 2.1 13 284-296 31-43 (281)
188 PF01060 DUF290: Transthyretin 35.7 50 0.0011 24.5 3.4 25 70-94 12-36 (80)
189 PF09849 DUF2076: Uncharacteri 34.3 36 0.00078 31.4 2.8 23 291-313 138-160 (247)
190 PRK11677 hypothetical protein; 33.9 39 0.00084 28.1 2.7 18 293-310 6-23 (134)
191 cd05137 RasGAP_CLA2_BUD2 CLA2/ 33.4 45 0.00098 32.9 3.5 44 87-134 1-46 (395)
192 PF06295 DUF1043: Protein of u 32.6 38 0.00083 27.8 2.5 16 294-309 3-18 (128)
193 PF04573 SPC22: Signal peptida 26.8 4.2E+02 0.0092 23.0 9.6 22 112-133 127-150 (175)
194 PRK00523 hypothetical protein; 26.6 75 0.0016 23.5 2.8 14 296-309 14-27 (72)
195 PF05818 TraT: Enterobacterial 24.7 58 0.0013 29.4 2.4 11 69-79 21-31 (215)
196 PRK01844 hypothetical protein; 24.5 77 0.0017 23.4 2.5 15 295-309 12-26 (72)
197 COG4980 GvpP Gas vesicle prote 23.6 59 0.0013 26.3 2.0 22 288-309 6-27 (115)
198 PF13441 Gly-zipper_YMGG: YMGG 23.3 74 0.0016 21.3 2.1 17 292-308 6-22 (45)
199 KOG0241 Kinesin-like protein [ 22.6 2.4E+02 0.0051 31.4 6.6 75 5-83 842-928 (1714)
200 PRK13731 conjugal transfer sur 22.6 71 0.0015 29.3 2.5 10 70-79 51-60 (243)
201 PF05660 DUF807: Coxiella burn 21.6 2.6E+02 0.0057 22.9 5.2 30 2-36 38-67 (142)
202 KOG3416 Predicted nucleic acid 21.1 2.6E+02 0.0057 23.0 5.2 21 54-79 37-57 (134)
203 PRK04081 hypothetical protein; 20.8 91 0.002 27.7 2.7 25 286-310 118-143 (207)
204 PF14472 DUF4429: Domain of un 20.4 1.8E+02 0.0039 22.3 4.1 15 86-100 22-36 (94)
205 PF01034 Syndecan: Syndecan do 20.2 34 0.00074 24.6 0.0 13 295-307 12-24 (64)
No 1
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.92 E-value=6.6e-24 Score=174.13 Aligned_cols=119 Identities=18% Similarity=0.299 Sum_probs=99.0
Q ss_pred ccEEEEEEEEecCCCCCCCCCCcceEEEEEEcCcceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeecCCC
Q 019724 3 SRALDITVVSASDLKTAGMFSKMNVYAVVTIFGESQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRSTGGC 82 (336)
Q Consensus 3 ~g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~d~~ 82 (336)
.|+|+|+|++||+|++.+ ++++||||+|+++..++||+++++++.||+|||+|.|.+... ...|.|+|||+|..
T Consensus 1 ~g~L~v~v~~Ak~l~~~~-~g~sDPYv~i~lg~~~~kT~v~~~~~~nP~WNe~F~f~v~~~-----~~~l~~~V~d~d~~ 74 (121)
T cd04016 1 VGRLSITVVQAKLVKNYG-LTRMDPYCRIRVGHAVYETPTAYNGAKNPRWNKTIQCTLPEG-----VDSIYIEIFDERAF 74 (121)
T ss_pred CcEEEEEEEEccCCCcCC-CCCCCceEEEEECCEEEEeEEccCCCCCCccCeEEEEEecCC-----CcEEEEEEEeCCCC
Confidence 479999999999998887 799999999999999999999877789999999999999653 26799999999776
Q ss_pred CCCcccEEEEEecee-eeccCCCCCCCCeeeeeeCCC-CCcceEEEEEEEE
Q 019724 83 FGNSDLGEVFVPVKE-MLLRSNGDDDKPMSYNITTPG-GRAKGVLNVSYKF 131 (336)
Q Consensus 83 ~~d~~LG~~~v~L~~-l~~~~~~~~~~~~~~~l~~~~-g~~~G~L~lsl~~ 131 (336)
.+|++||+++|+|.+ +.. +.. ...|+.|..++ .+..|+|+|+|+|
T Consensus 75 ~~dd~iG~~~i~l~~~~~~-g~~---~~~W~~L~~~~~~~~~g~i~l~l~y 121 (121)
T cd04016 75 TMDERIAWTHITIPESVFN-GET---LDDWYSLSGKQGEDKEGMINLVFSY 121 (121)
T ss_pred cCCceEEEEEEECchhccC-CCC---ccccEeCcCccCCCCceEEEEEEeC
Confidence 689999999999974 443 322 34677776533 3467999999986
No 2
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.88 E-value=5e-22 Score=161.91 Aligned_cols=118 Identities=22% Similarity=0.334 Sum_probs=99.5
Q ss_pred cEEEEEEEEecCCCCCCCCCCcceEEEEEEcCcceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeecCCCC
Q 019724 4 RALDITVVSASDLKTAGMFSKMNVYAVVTIFGESQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRSTGGCF 83 (336)
Q Consensus 4 g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~d~~~ 83 (336)
|+|+|+|++|++|+..+..+++||||+|++.....||+++++++.||+|||+|.|.+.... ...|.|+|||++. .
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~----~~~l~i~v~d~~~-~ 75 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITEDK----KPILKVAVFDDDK-R 75 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCCCCceEEEEECCCccccccccCCCCCCccCceEEEEecCCC----CCEEEEEEEeCCC-C
Confidence 6899999999999999989999999999999888999987666799999999999997642 4789999999954 4
Q ss_pred CCcccEEEEEeceeeeccCCCCCCCCeeeeeeCCCCCcceEEEEEEEE
Q 019724 84 GNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITTPGGRAKGVLNVSYKF 131 (336)
Q Consensus 84 ~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~~~g~~~G~L~lsl~~ 131 (336)
+|++||++.|+|++++.. .. ...|+.|.+ +++..|+|+|+|+|
T Consensus 76 ~~~~iG~~~~~l~~~~~~-~~---~~~w~~L~~-~~~~~G~i~l~l~f 118 (118)
T cd08681 76 KPDLIGDTEVDLSPALKE-GE---FDDWYELTL-KGRYAGEVYLELTF 118 (118)
T ss_pred CCcceEEEEEecHHHhhc-CC---CCCcEEecc-CCcEeeEEEEEEEC
Confidence 589999999999998762 21 235677764 45789999999986
No 3
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.87 E-value=1.6e-21 Score=166.02 Aligned_cols=129 Identities=16% Similarity=0.271 Sum_probs=104.9
Q ss_pred EEEEEEEEecCCCCCCCCCCcceEEEEEEcCcceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeecCCCCC
Q 019724 5 ALDITVVSASDLKTAGMFSKMNVYAVVTIFGESQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRSTGGCFG 84 (336)
Q Consensus 5 ~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~d~~~~ 84 (336)
.|+|+|++|++|...+.++++||||+|++++..+||+++++++.||+|||+|.|.+.+.. ...|.|+|||++...+
T Consensus 1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~~~~kTk~~~~~t~nP~WNE~F~f~v~~~~----~~~l~v~V~d~~~~~~ 76 (150)
T cd04019 1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEPF----EDHLILSVEDRVGPNK 76 (150)
T ss_pred CEEEEEEEeECCCCCCCCCCCCeEEEEEECCEEeeeEeccCCCCCCcccCcEEEEecCcc----CCeEEEEEEEecCCCC
Confidence 489999999999999999999999999999988999997665799999999999986532 3689999999976668
Q ss_pred CcccEEEEEeceeeeccCCCCCCCCeeeeeeCCC--------CCcceEEEEEEEEcccCCC
Q 019724 85 NSDLGEVFVPVKEMLLRSNGDDDKPMSYNITTPG--------GRAKGVLNVSYKFGPSSSA 137 (336)
Q Consensus 85 d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~~~--------g~~~G~L~lsl~~~~~~~~ 137 (336)
|++||++.|+|+++............||.|.+.. .+.+|+|+|.|.|.+....
T Consensus 77 dd~lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~~~~~~ 137 (150)
T cd04019 77 DEPLGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLDGGYHV 137 (150)
T ss_pred CCeEEEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEecCcceE
Confidence 9999999999999875211111245678887643 3567999999999975543
No 4
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.87 E-value=2.4e-21 Score=160.25 Aligned_cols=123 Identities=20% Similarity=0.271 Sum_probs=101.0
Q ss_pred EEEEEEEEecCCCCCCCCCCcceEEEEEEcCcceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeecCCCC-
Q 019724 5 ALDITVVSASDLKTAGMFSKMNVYAVVTIFGESQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRSTGGCF- 83 (336)
Q Consensus 5 ~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~d~~~- 83 (336)
+|+|+|++|++|...+..+.+||||+|++...++||+++ +++.||+|||+|.|.+.... ......|+|+|||+++..
T Consensus 1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~rT~v~-~~t~nP~Wne~f~f~~~~~~-~~~~~~l~~~V~d~~~~~~ 78 (127)
T cd04022 1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTK-PKDLNPVWNEKLVFNVSDPS-RLSNLVLEVYVYNDRRSGR 78 (127)
T ss_pred CeEEEEEEeeCCCCCCCCCCcCcEEEEEECCEEecceeE-cCCCCCccceEEEEEccCHH-HccCCeEEEEEeeCCCCcC
Confidence 589999999999988888899999999999988999995 46899999999999997542 122468999999996665
Q ss_pred CCcccEEEEEeceeeeccCCCCCCCCeeeeeeCC--CCCcceEEEEEEEEc
Q 019724 84 GNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITTP--GGRAKGVLNVSYKFG 132 (336)
Q Consensus 84 ~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~~--~g~~~G~L~lsl~~~ 132 (336)
+|++||++.|+|+++...+. ....||.|.++ .++.+|+|+|++.++
T Consensus 79 ~d~~lG~v~i~l~~l~~~~~---~~~~w~~L~~~~~~~~~~G~l~l~~~~~ 126 (127)
T cd04022 79 RRSFLGRVRISGTSFVPPSE---AVVQRYPLEKRGLFSRVRGEIGLKVYIT 126 (127)
T ss_pred CCCeeeEEEEcHHHcCCCCC---ccceEeEeeeCCCCCCccEEEEEEEEEc
Confidence 79999999999999884222 23467777753 356899999999986
No 5
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.87 E-value=1.7e-21 Score=160.83 Aligned_cols=122 Identities=17% Similarity=0.297 Sum_probs=97.5
Q ss_pred EEEEEEEecCCCCCCCCCCcceEEEEEEcCcceEEEEeeCCCCCCeeeeEEEEEecchhh-hcCCcEEEEEEeecCCCCC
Q 019724 6 LDITVVSASDLKTAGMFSKMNVYAVVTIFGESQTTSVARDCGVRPTWNHQMRFNIDEAAA-MQNNLTIVYSIRSTGGCFG 84 (336)
Q Consensus 6 L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~~~kTkv~~~~t~nP~WnE~f~F~v~~~~~-~~~~~~L~v~V~d~d~~~~ 84 (336)
|+|+|++|++|...+..+++||||+|++...++||++++ ++.||+|||+|.|.+..... +.....|+|+|||++...+
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~~~~kT~v~~-~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~~~ 79 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKE-KTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLLGL 79 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEEEECCeeeeeeeec-CCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccccCC
Confidence 589999999999988889999999999998889999965 47999999999999976311 1234789999999966667
Q ss_pred CcccEEEEEeceeeeccCCCCCCCCeeeeeeCC---CCCcceEEEEEEE
Q 019724 85 NSDLGEVFVPVKEMLLRSNGDDDKPMSYNITTP---GGRAKGVLNVSYK 130 (336)
Q Consensus 85 d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~~---~g~~~G~L~lsl~ 130 (336)
|++||++.|+|+++...... ....||.|..+ ..+.+|+|+|+|+
T Consensus 80 d~~iG~~~i~l~~l~~~~~~--~~~~W~~L~~~~~~~~~~~Gei~l~~~ 126 (126)
T cd08682 80 DKFLGQVSIPLNDLDEDKGR--RRTRWFKLESKPGKDDKERGEIEVDIQ 126 (126)
T ss_pred CceeEEEEEEHHHhhccCCC--cccEEEECcCCCCCCccccceEEEEeC
Confidence 99999999999998741121 24478888743 2356899999874
No 6
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.86 E-value=3.2e-21 Score=158.77 Aligned_cols=123 Identities=40% Similarity=0.666 Sum_probs=102.7
Q ss_pred EEEEEEEEecCCCCCCCCCCcceEEEEEEcC-cceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeecCCCC
Q 019724 5 ALDITVVSASDLKTAGMFSKMNVYAVVTIFG-ESQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRSTGGCF 83 (336)
Q Consensus 5 ~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~-~~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~d~~~ 83 (336)
+|+|+|++|++|+..+..+++||||+|++.. ..++|+++++++.||+|||+|.|.+....+......|.|+|||+++..
T Consensus 1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~~~ 80 (125)
T cd04051 1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERPSL 80 (125)
T ss_pred CEEEEEEEcccCCCCCcccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCCCC
Confidence 5899999999999988889999999999988 679999976678999999999999976532223578999999996667
Q ss_pred CCcccEEEEEeceeeeccCCCC-CCCCeeeeeeCCCCCcceEEEE
Q 019724 84 GNSDLGEVFVPVKEMLLRSNGD-DDKPMSYNITTPGGRAKGVLNV 127 (336)
Q Consensus 84 ~d~~LG~~~v~L~~l~~~~~~~-~~~~~~~~l~~~~g~~~G~L~l 127 (336)
+|++||++.|+|.+++...... .....||.|++.+++.+|+|+|
T Consensus 81 ~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~g~~~G~~~~ 125 (125)
T cd04051 81 GDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPSGKPQGVLNF 125 (125)
T ss_pred CCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCCCCcCeEEeC
Confidence 8999999999999998733321 1245789999988999999985
No 7
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.86 E-value=8.7e-21 Score=155.49 Aligned_cols=119 Identities=13% Similarity=0.288 Sum_probs=99.4
Q ss_pred EEEEEEEEecCCCCCCCCCCcceEEEEEEcCc-ceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeecCCCC
Q 019724 5 ALDITVVSASDLKTAGMFSKMNVYAVVTIFGE-SQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRSTGGCF 83 (336)
Q Consensus 5 ~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~-~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~d~~~ 83 (336)
.|+|+|++|++|...+..+++||||+|++.+. .+||++++ ++.||+|||+|.|.+... ...|.|+|||+|...
T Consensus 1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~kT~~~~-~t~nP~Wne~f~f~v~~~-----~~~l~~~v~D~d~~~ 74 (121)
T cd04042 1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIY-KNLNPVWDEKFTLPIEDV-----TQPLYIKVFDYDRGL 74 (121)
T ss_pred CeEEEEEEeeCCCCcCCCCCCCCeEEEEECCEEEEEeeecc-CCCCCccceeEEEEecCC-----CCeEEEEEEeCCCCC
Confidence 38999999999999998899999999999873 58999865 589999999999998653 368999999997766
Q ss_pred CCcccEEEEEeceeeeccCCCCCCCCeeeeeeCCC-CCcceEEEEEEEEcc
Q 019724 84 GNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITTPG-GRAKGVLNVSYKFGP 133 (336)
Q Consensus 84 ~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~~~-g~~~G~L~lsl~~~~ 133 (336)
+|++||++.++|.++.. +.. ...|+.|.... .+..|+|+|+++|.+
T Consensus 75 ~~~~iG~~~~~l~~l~~-~~~---~~~~~~L~~~~~~~~~G~l~l~~~~~~ 121 (121)
T cd04042 75 TDDFMGSAFVDLSTLEL-NKP---TEVKLKLEDPNSDEDLGYISLVVTLTP 121 (121)
T ss_pred CCcceEEEEEEHHHcCC-CCC---eEEEEECCCCCCccCceEEEEEEEECC
Confidence 89999999999999886 221 33678887644 367899999999864
No 8
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.85 E-value=1.6e-20 Score=157.38 Aligned_cols=121 Identities=17% Similarity=0.246 Sum_probs=98.5
Q ss_pred ccEEEEEEEEecCCCCCCCCCCcceEEEEEEcCcceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeecCCC
Q 019724 3 SRALDITVVSASDLKTAGMFSKMNVYAVVTIFGESQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRSTGGC 82 (336)
Q Consensus 3 ~g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~d~~ 82 (336)
.|+|+|+|++|++|...+..+++||||+|+++...+||++++ ++.||+|||+|.|.+.... ...|.|+|||+|..
T Consensus 14 ~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~~~~kT~vi~-~t~nP~Wne~f~f~v~~~~----~~~l~i~V~D~d~~ 88 (136)
T cd08375 14 IGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVS-DTLNPKWNSSMQFFVKDLE----QDVLCITVFDRDFF 88 (136)
T ss_pred cEEEEEEEEEeeCCCCCCCCCCcCcEEEEEECCEeeeccccC-CCCCCccCceEEEEecCcc----CCEEEEEEEECCCC
Confidence 579999999999999998889999999999998889999955 5899999999999996532 36899999999766
Q ss_pred CCCcccEEEEEeceeeeccCCCCCC-CCeeeeeeCCCCCcceEEEEEEEE
Q 019724 83 FGNSDLGEVFVPVKEMLLRSNGDDD-KPMSYNITTPGGRAKGVLNVSYKF 131 (336)
Q Consensus 83 ~~d~~LG~~~v~L~~l~~~~~~~~~-~~~~~~l~~~~g~~~G~L~lsl~~ 131 (336)
..|++||+++|+|.+++........ .+.++.+ +...+|+|+|+|+|
T Consensus 89 ~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~---~~~~~g~i~l~~~~ 135 (136)
T cd08375 89 SPDDFLGRTEIRVADILKETKESKGPITKRLLL---HEVPTGEVVVKLDL 135 (136)
T ss_pred CCCCeeEEEEEEHHHhccccccCCCcEEEEecc---ccccceeEEEEEEe
Confidence 6899999999999999862211111 2233333 36678999999987
No 9
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.84 E-value=5.1e-20 Score=153.15 Aligned_cols=122 Identities=19% Similarity=0.380 Sum_probs=99.0
Q ss_pred EEEEEEEEecCCCCCCCCCCcceEEEEEEcCc-------ceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEe
Q 019724 5 ALDITVVSASDLKTAGMFSKMNVYAVVTIFGE-------SQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIR 77 (336)
Q Consensus 5 ~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~-------~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~ 77 (336)
.|+|+|++|++|...+..+++||||+|++.+. ..+|+++ +++.||+|||+|.|.+... ...|.|+||
T Consensus 1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~-~~t~nP~Wne~f~f~~~~~-----~~~l~~~v~ 74 (133)
T cd04033 1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTI-KKTLNPKWNEEFFFRVNPR-----EHRLLFEVF 74 (133)
T ss_pred CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEE-cCCCCCcEeeEEEEEEcCC-----CCEEEEEEE
Confidence 48999999999999998899999999999765 3789985 4689999999999998653 267999999
Q ss_pred ecCCCCCCcccEEEEEeceeeeccCCCC--CCCCeeeeeeC--CCCCcceEEEEEEEEc
Q 019724 78 STGGCFGNSDLGEVFVPVKEMLLRSNGD--DDKPMSYNITT--PGGRAKGVLNVSYKFG 132 (336)
Q Consensus 78 d~d~~~~d~~LG~~~v~L~~l~~~~~~~--~~~~~~~~l~~--~~g~~~G~L~lsl~~~ 132 (336)
|++...+|++||++.|+|.++....... .....||.|++ ..++.+|+|+|+++|.
T Consensus 75 d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~G~l~~~~~~~ 133 (133)
T cd04033 75 DENRLTRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSKSRVKGHLRLYMAYL 133 (133)
T ss_pred ECCCCCCCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCCCcceeEEEEEEeeC
Confidence 9966668999999999999998733221 11345677764 3467899999999984
No 10
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.84 E-value=4.9e-20 Score=150.19 Aligned_cols=117 Identities=20% Similarity=0.273 Sum_probs=98.4
Q ss_pred cEEEEEEEEecCCCCCCCCCCcceEEEEEEcCcceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeecCCCC
Q 019724 4 RALDITVVSASDLKTAGMFSKMNVYAVVTIFGESQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRSTGGCF 83 (336)
Q Consensus 4 g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~d~~~ 83 (336)
|.|+|+|++|++|...+..+++||||+|.+.....||++++ ++.||+|||+|.|.+... ...|.|+|||++...
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~~T~~~~-~t~nP~W~e~f~~~~~~~-----~~~l~~~v~d~~~~~ 74 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVNARLQTHTIY-KTLNPEWNKIFTFPIKDI-----HDVLEVTVYDEDKDK 74 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECCEeeecceec-CCcCCccCcEEEEEecCc-----CCEEEEEEEECCCCC
Confidence 68999999999999999889999999999988889999965 579999999999998653 378999999996656
Q ss_pred CCcccEEEEEeceeeeccCCCCCCCCeeeeeeCC--CCCcceEEEEEEEEc
Q 019724 84 GNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITTP--GGRAKGVLNVSYKFG 132 (336)
Q Consensus 84 ~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~~--~g~~~G~L~lsl~~~ 132 (336)
++++||++.++|.++.. . ...|+.|.+. +.+.+|+|.|+++|.
T Consensus 75 ~~~~iG~~~~~l~~~~~-~-----~~~~~~l~~~~~~~~~~G~i~l~~~~~ 119 (119)
T cd08377 75 KPEFLGKVAIPLLSIKN-G-----ERKWYALKDKKLRTRAKGSILLEMDVI 119 (119)
T ss_pred CCceeeEEEEEHHHCCC-C-----CceEEECcccCCCCceeeEEEEEEEeC
Confidence 89999999999999864 1 1256777653 456799999999873
No 11
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.84 E-value=3.9e-20 Score=151.93 Aligned_cols=117 Identities=24% Similarity=0.294 Sum_probs=95.2
Q ss_pred EEEEEEEecCCCCCCCCCCcceEEEEEEcCcceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeecCCCCCC
Q 019724 6 LDITVVSASDLKTAGMFSKMNVYAVVTIFGESQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRSTGGCFGN 85 (336)
Q Consensus 6 L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~d~~~~d 85 (336)
|+|+|++|++|... ++||||+|++.....||++++ ++.||+|||+|.|.+... ....|+|+|||+|. .+|
T Consensus 2 L~V~Vi~a~~L~~~----~~Dpyv~v~l~~~~~kT~v~~-~t~nP~Wne~F~f~~~~~----~~~~L~~~v~d~d~-~~~ 71 (121)
T cd08378 2 LYVRVVKARGLPAN----SNDPVVEVKLGNYKGSTKAIE-RTSNPEWNQVFAFSKDRL----QGSTLEVSVWDKDK-AKD 71 (121)
T ss_pred EEEEEEEecCCCcc----cCCCEEEEEECCccccccccC-CCCCCccceEEEEEcCCC----cCCEEEEEEEeCCC-CcC
Confidence 89999999999876 689999999998889999954 579999999999998653 24789999999954 489
Q ss_pred cccEEEEEeceeeeccCCCC-CCCCeeeeeeCCC-CCcceEEEEEEEEc
Q 019724 86 SDLGEVFVPVKEMLLRSNGD-DDKPMSYNITTPG-GRAKGVLNVSYKFG 132 (336)
Q Consensus 86 ~~LG~~~v~L~~l~~~~~~~-~~~~~~~~l~~~~-g~~~G~L~lsl~~~ 132 (336)
++||++.|+|+++..+.... .....||.|.... .+.+|+|+|+|+|.
T Consensus 72 ~~lG~~~i~l~~l~~~~~~~~~~~~~W~~L~~~~~~~~~G~i~l~~~~~ 120 (121)
T cd08378 72 DFLGGVCFDLSEVPTRVPPDSPLAPQWYRLEDKKGGRVGGELMLAVWFG 120 (121)
T ss_pred ceeeeEEEEhHhCcCCCCCCCCCCcceEEccCCCCCccceEEEEEEEec
Confidence 99999999999987632211 1134678887633 57899999999985
No 12
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.84 E-value=2.7e-20 Score=153.75 Aligned_cols=113 Identities=15% Similarity=0.234 Sum_probs=92.9
Q ss_pred EEEEEEEEecC---CCCCCCCCCcceEEEEEEcCcceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeecCC
Q 019724 5 ALDITVVSASD---LKTAGMFSKMNVYAVVTIFGESQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRSTGG 81 (336)
Q Consensus 5 ~L~V~vi~Ak~---L~~~d~~g~~dPYv~v~l~~~~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~d~ 81 (336)
.|+|+|++|++ |...+..+++||||+|+++.++.||++++ +++||+|||+|.|.+.... ..|+|+|||++.
T Consensus 1 ~L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~~~~rTk~~~-~~~nP~WnE~f~f~v~~~~-----~~l~v~V~d~d~ 74 (126)
T cd08379 1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKWVRTRTVE-DSSNPRWNEQYTWPVYDPC-----TVLTVGVFDNSQ 74 (126)
T ss_pred CeEEEEEEeECCccccccccCCCCCeeEEEEECCEEeEcCccc-CCCCCcceeEEEEEecCCC-----CEEEEEEEECCC
Confidence 38999999999 88889899999999999999999999965 5799999999999996542 589999999966
Q ss_pred CC------CCcccEEEEEeceeeeccCCCCCCCCeeeeeeCC---CCCcceEEEE
Q 019724 82 CF------GNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITTP---GGRAKGVLNV 127 (336)
Q Consensus 82 ~~------~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~~---~g~~~G~L~l 127 (336)
.+ +|++||++.|+|.++.. +. . ...||.|+.. ..+..|+|++
T Consensus 75 ~~~~~~~~~dd~lG~~~i~l~~l~~-~~-~--~~~~~~L~~~~~~~~~~~g~l~~ 125 (126)
T cd08379 75 SHWKEAVQPDVLIGKVRIRLSTLED-DR-V--YAHSYPLLSLNPSGVKKMGELEC 125 (126)
T ss_pred ccccccCCCCceEEEEEEEHHHccC-CC-E--EeeEEEeEeCCCCCccCCcEEEe
Confidence 53 89999999999999886 22 1 2367787753 2456777765
No 13
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.84 E-value=4.4e-20 Score=151.60 Aligned_cols=117 Identities=15% Similarity=0.208 Sum_probs=94.6
Q ss_pred EEEEEEEEecCCCCCC-CCCCcceEEEEEEcCcc-eEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeecCCC
Q 019724 5 ALDITVVSASDLKTAG-MFSKMNVYAVVTIFGES-QTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRSTGGC 82 (336)
Q Consensus 5 ~L~V~vi~Ak~L~~~d-~~g~~dPYv~v~l~~~~-~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~d~~ 82 (336)
.|+|+|++|++|+..+ ..+.+||||+|.+.... .||++++ ++.||+|||+|.|.+.+. ...|.|+|||+++.
T Consensus 1 ~l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~~~~kT~v~~-kt~~P~WnE~F~f~v~~~-----~~~l~~~v~d~~~~ 74 (121)
T cd08401 1 SLKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEEVFRTKTVE-KSLCPFFGEDFYFEIPRT-----FRHLSFYIYDRDVL 74 (121)
T ss_pred CeEEEEEEccCCCCCCCCCCCcCcEEEEEECCccEEEeeEEE-CCCCCccCCeEEEEcCCC-----CCEEEEEEEECCCC
Confidence 3789999999999864 35789999999997654 7999955 589999999999999754 26899999999777
Q ss_pred CCCcccEEEEEeceeeeccCCCCCCCCeeeeeeC--CCCCcceEEEEEEEE
Q 019724 83 FGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITT--PGGRAKGVLNVSYKF 131 (336)
Q Consensus 83 ~~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~--~~g~~~G~L~lsl~~ 131 (336)
.+|++||++.|+|+++.. ... ...||.|.. .+++.+|+|+|+++|
T Consensus 75 ~~~~~iG~~~i~l~~l~~--~~~--~~~w~~L~~~~~~~~~~G~i~l~~~~ 121 (121)
T cd08401 75 RRDSVIGKVAIKKEDLHK--YYG--KDTWFPLQPVDADSEVQGKVHLELRL 121 (121)
T ss_pred CCCceEEEEEEEHHHccC--CCC--cEeeEEEEccCCCCcccEEEEEEEEC
Confidence 789999999999999876 222 235667664 345568999999875
No 14
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.84 E-value=4.2e-20 Score=152.68 Aligned_cols=119 Identities=15% Similarity=0.188 Sum_probs=98.4
Q ss_pred ccEEEEEEEEecCCCCCCCCCCcceEEEEEEcCcceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeecCCC
Q 019724 3 SRALDITVVSASDLKTAGMFSKMNVYAVVTIFGESQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRSTGGC 82 (336)
Q Consensus 3 ~g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~d~~ 82 (336)
+.+|+|+|++|++|...+.++++||||+|++....+||+++ +++.||+|||+|.|.+... ...|+|+|||+ +.
T Consensus 2 ~~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~~~~kT~v~-~~t~nP~Wne~f~f~~~~~-----~~~l~i~V~d~-~~ 74 (126)
T cd04046 2 QVVTQVHVHSAEGLSKQDSGGGADPYVIIKCEGESVRSPVQ-KDTLSPEFDTQAIFYRKKP-----RSPIKIQVWNS-NL 74 (126)
T ss_pred cEEEEEEEEeCcCCCCCCCCCCcCccEEEEECCEEEEeCcc-CCCCCCcccceEEEEecCC-----CCEEEEEEEEC-CC
Confidence 56899999999999999888999999999999989999995 4579999999999988654 47899999999 45
Q ss_pred CCCcccEEEEEeceeeeccCCCCCCCCeeeeee----CCCCCcceEEEEEEEEccc
Q 019724 83 FGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNIT----TPGGRAKGVLNVSYKFGPS 134 (336)
Q Consensus 83 ~~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~----~~~g~~~G~L~lsl~~~~~ 134 (336)
.+|++||++++.+.++.. . ...+|.|. +.+++..|+|.|++++...
T Consensus 75 ~~d~~lG~~~~~l~~~~~--~----~~~~~~l~~~~~~~~~~~~G~i~~~~~~~~~ 124 (126)
T cd04046 75 LCDEFLGQATLSADPNDS--Q----TLRTLPLRKRGRDAAGEVPGTISVKVTSSDD 124 (126)
T ss_pred CCCCceEEEEEecccCCC--c----CceEEEcccCCCCCCCCCCCEEEEEEEEccc
Confidence 578999999999987543 1 12345553 2567889999999988654
No 15
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.83 E-value=5.1e-20 Score=151.86 Aligned_cols=122 Identities=19% Similarity=0.293 Sum_probs=98.9
Q ss_pred cEEEEEEEEecCCCCCCC--CCCcceEEEEEEcCcceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeecCC
Q 019724 4 RALDITVVSASDLKTAGM--FSKMNVYAVVTIFGESQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRSTGG 81 (336)
Q Consensus 4 g~L~V~vi~Ak~L~~~d~--~g~~dPYv~v~l~~~~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~d~ 81 (336)
|+|+|+|++|++|...+. .+++||||+|.+....+||++++ ++.||+|||+|.|.+... ....|+|+|||++.
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~~~~kT~~~~-~t~~P~Wne~f~~~~~~~----~~~~l~i~v~d~~~ 75 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIP-NTLNPKWNYWCEFPIFSA----QNQLLKLILWDKDR 75 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEECCEEEecceec-CCcCCccCCcEEEEecCC----CCCEEEEEEEECCC
Confidence 689999999999998887 88999999999988889999965 589999999999999752 24789999999976
Q ss_pred CCCCcccEEEEEeceeeeccCCCCCCCCeeeeeeCC----CCCcceEEEEEEEE
Q 019724 82 CFGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITTP----GGRAKGVLNVSYKF 131 (336)
Q Consensus 82 ~~~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~~----~g~~~G~L~lsl~~ 131 (336)
...|++||+++|+|.++...... .....||.|... +....|+|+|+++|
T Consensus 76 ~~~~~~lG~~~i~l~~~~~~~~~-~~~~~w~~L~~~~~~~~~~~~G~i~l~~~~ 128 (128)
T cd04024 76 FAGKDYLGEFDIALEEVFADGKT-GQSDKWITLKSTRPGKTSVVSGEIHLQFSW 128 (128)
T ss_pred CCCCCcceEEEEEHHHhhccccc-CccceeEEccCcccCccccccceEEEEEEC
Confidence 66899999999999998742111 113356777643 23479999999875
No 16
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.83 E-value=8.1e-20 Score=150.90 Aligned_cols=119 Identities=17% Similarity=0.323 Sum_probs=96.7
Q ss_pred EEEEEEEecCCCCCCCCCCcceEEEEEEcC--cceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeecCCCC
Q 019724 6 LDITVVSASDLKTAGMFSKMNVYAVVTIFG--ESQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRSTGGCF 83 (336)
Q Consensus 6 L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~--~~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~d~~~ 83 (336)
|.|+|++|++|.. ..+++||||++++.. ..+||++++ ++.||+|||+|.|.+... ...|.|+|||++...
T Consensus 1 l~v~v~~A~~L~~--~~g~~dpyv~v~~~~~~~~~kT~v~~-~t~nP~Wne~f~f~~~~~-----~~~l~~~v~d~~~~~ 72 (126)
T cd08678 1 LLVKNIKANGLSE--AAGSSNPYCVLEMDEPPQKYQSSTQK-NTSNPFWDEHFLFELSPN-----SKELLFEVYDNGKKS 72 (126)
T ss_pred CEEEEEEecCCCC--CCCCcCCEEEEEECCCCcEEEeEEEe-cCCCCccCceEEEEeCCC-----CCEEEEEEEECCCCC
Confidence 6899999999987 678999999999974 348999965 579999999999999543 368999999997777
Q ss_pred CCcccEEEEEeceeeeccCCCCCCCCeeeeeeCC---CCCcceEEEEEEEEcccCC
Q 019724 84 GNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITTP---GGRAKGVLNVSYKFGPSSS 136 (336)
Q Consensus 84 ~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~~---~g~~~G~L~lsl~~~~~~~ 136 (336)
+|++||++.|+|.+|..... ...|+.|..+ +....|+|+|+|.|.+..+
T Consensus 73 ~~~~lG~~~i~l~~l~~~~~----~~~~~~L~~~~~~~~~~~G~l~l~~~~~~~~~ 124 (126)
T cd08678 73 DSKFLGLAIVPFDELRKNPS----GRQIFPLQGRPYEGDSVSGSITVEFLFMEPAE 124 (126)
T ss_pred CCceEEEEEEeHHHhccCCc----eeEEEEecCCCCCCCCcceEEEEEEEEecccc
Confidence 89999999999999986222 2256777643 3567999999999977653
No 17
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.83 E-value=7.9e-20 Score=148.44 Aligned_cols=115 Identities=10% Similarity=0.183 Sum_probs=97.0
Q ss_pred EEEEEEEEecCCCCCCCCCCcceEEEEEEcCcceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeecCCCCC
Q 019724 5 ALDITVVSASDLKTAGMFSKMNVYAVVTIFGESQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRSTGGCFG 84 (336)
Q Consensus 5 ~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~d~~~~ 84 (336)
+|+|+|++|++|+..+..+++||||+|++.+...||++++ ++.||+|||+|.|.+.... ...|.|+|||++....
T Consensus 1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~v~~-~t~nP~Wne~f~f~~~~~~----~~~l~v~v~d~~~~~~ 75 (116)
T cd08376 1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCS-KTLNPQWLEQFDLHLFDDQ----SQILEIEVWDKDTGKK 75 (116)
T ss_pred CEEEEEEEEECCCCCCCCCCCCcEEEEEECCEeEeccccc-CCCCCceeEEEEEEecCCC----CCEEEEEEEECCCCCC
Confidence 4899999999999998889999999999988889999954 5899999999999986542 4789999999976668
Q ss_pred CcccEEEEEeceeeeccCCCCCCCCeeeeeeCCCCCcceEEEEEEEEc
Q 019724 85 NSDLGEVFVPVKEMLLRSNGDDDKPMSYNITTPGGRAKGVLNVSYKFG 132 (336)
Q Consensus 85 d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~~~g~~~G~L~lsl~~~ 132 (336)
|++||++.++|+++.. +. ....|+.|.. ..|+|+|.|+|.
T Consensus 76 ~~~iG~~~~~l~~l~~-~~---~~~~w~~L~~----~~G~~~~~~~~~ 115 (116)
T cd08376 76 DEFIGRCEIDLSALPR-EQ---THSLELELED----GEGSLLLLLTLT 115 (116)
T ss_pred CCeEEEEEEeHHHCCC-CC---ceEEEEEccC----CCcEEEEEEEec
Confidence 9999999999999876 22 2347788863 269999999875
No 18
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.83 E-value=1.1e-19 Score=149.02 Aligned_cols=121 Identities=19% Similarity=0.292 Sum_probs=96.8
Q ss_pred ccEEEEEEEEecCCCCCCC-CCCcceEEEEEEcC--cceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeec
Q 019724 3 SRALDITVVSASDLKTAGM-FSKMNVYAVVTIFG--ESQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRST 79 (336)
Q Consensus 3 ~g~L~V~vi~Ak~L~~~d~-~g~~dPYv~v~l~~--~~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~ 79 (336)
.|+|+|+|++|++|+..+. .+.+||||+|++.. ...||++++ ++.||+|||+|.|.+... ...|.|+|||+
T Consensus 1 ~g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~~~~~kT~~~~-~~~~P~Wne~~~~~v~~~-----~~~l~~~v~d~ 74 (124)
T cd04044 1 IGVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKK-DTSNPVWNETKYILVNSL-----TEPLNLTVYDF 74 (124)
T ss_pred CeEEEEEEEcccCCCcccccCCCCCCeEEEEECCCCcceEeeeec-CCCCCcceEEEEEEeCCC-----CCEEEEEEEec
Confidence 4789999999999996553 46789999999988 569999964 589999999999998732 47899999999
Q ss_pred CCCCCCcccEEEEEeceeeeccCCCCCCCCeeeeeeCCCCCcceEEEEEEEEcc
Q 019724 80 GGCFGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITTPGGRAKGVLNVSYKFGP 133 (336)
Q Consensus 80 d~~~~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~~~g~~~G~L~lsl~~~~ 133 (336)
+...+|++||+++++|.++..... . ...++.+. .+++.+|+|+|+|+|.+
T Consensus 75 ~~~~~d~~iG~~~~~l~~l~~~~~--~-~~~~~~~~-~~~k~~G~i~~~l~~~p 124 (124)
T cd04044 75 NDKRKDKLIGTAEFDLSSLLQNPE--Q-ENLTKNLL-RNGKPVGELNYDLRFFP 124 (124)
T ss_pred CCCCCCceeEEEEEEHHHhccCcc--c-cCcchhhh-cCCccceEEEEEEEeCC
Confidence 766689999999999999987222 1 11233333 46778999999999964
No 19
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.83 E-value=8.8e-20 Score=149.87 Aligned_cols=117 Identities=20% Similarity=0.275 Sum_probs=96.6
Q ss_pred EEEEEEEEecCCCCCCCCCCcceEEEEEEcCcceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeecCCCCC
Q 019724 5 ALDITVVSASDLKTAGMFSKMNVYAVVTIFGESQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRSTGGCFG 84 (336)
Q Consensus 5 ~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~d~~~~ 84 (336)
+|+|+|++|++|...+..+.+||||+|++.....+|++++ ++.||+|||+|.|.+.... ...|.|+|||++....
T Consensus 1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~~~~kT~v~~-~t~nP~Wne~f~f~~~~~~----~~~l~~~v~d~~~~~~ 75 (123)
T cd04025 1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVK-KSCYPRWNEVFEFELMEGA----DSPLSVEVWDWDLVSK 75 (123)
T ss_pred CEEEEEEEeeCCCCCCCCCCcCceEEEEECCEEEeceeec-CCCCCccCcEEEEEcCCCC----CCEEEEEEEECCCCCC
Confidence 5899999999999988888999999999988889999965 5799999999999997642 4689999999966668
Q ss_pred CcccEEEEEeceeeeccCCCCCCCCeeeeeeC------CCCCcceEEEEEEE
Q 019724 85 NSDLGEVFVPVKEMLLRSNGDDDKPMSYNITT------PGGRAKGVLNVSYK 130 (336)
Q Consensus 85 d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~------~~g~~~G~L~lsl~ 130 (336)
+++||++.++|.++.. ... ...||.|.. ++++..|.|+|.|+
T Consensus 76 ~~~iG~~~~~l~~l~~--~~~--~~~w~~L~~~~~~~~~~~~~~G~l~~~~~ 123 (123)
T cd04025 76 NDFLGKVVFSIQTLQQ--AKQ--EEGWFRLLPDPRAEEESGGNLGSLRLKVR 123 (123)
T ss_pred CcEeEEEEEEHHHccc--CCC--CCCEEECCCCCCCCccccCceEEEEEEeC
Confidence 9999999999999875 222 235666654 35667899999874
No 20
>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=99.82 E-value=4e-20 Score=156.29 Aligned_cols=94 Identities=19% Similarity=0.362 Sum_probs=86.6
Q ss_pred CCccEEEEEEEEecCCCCCCCCCCcceEEEEEEcCcceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeecC
Q 019724 1 MGSRALDITVVSASDLKTAGMFSKMNVYAVVTIFGESQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRSTG 80 (336)
Q Consensus 1 m~~g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~d 80 (336)
|..|.|+|+|+++++|..+|+.+++||||++.+++++.||+++ ++++||+|||+|+|.|.+. +..|+|+|||+|
T Consensus 3 ~~vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~q~lkT~~v-~~n~NPeWNe~ltf~v~d~-----~~~lkv~VyD~D 76 (168)
T KOG1030|consen 3 MLVGLLRVRVKRGKNLAIRDFLGSSDPYVVLELGNQKLKTRVV-YKNLNPEWNEELTFTVKDP-----NTPLKVTVYDKD 76 (168)
T ss_pred ccceEEEEEEEeecCeeeeccccCCCCeEEEEECCeeeeeeee-cCCCCCcccceEEEEecCC-----CceEEEEEEeCC
Confidence 4578999999999999999988999999999999999999985 5679999999999999876 489999999998
Q ss_pred CCCCCcccEEEEEeceeeec
Q 019724 81 GCFGNSDLGEVFVPVKEMLL 100 (336)
Q Consensus 81 ~~~~d~~LG~~~v~L~~l~~ 100 (336)
...+||+||+++|+|..+++
T Consensus 77 ~fs~dD~mG~A~I~l~p~~~ 96 (168)
T KOG1030|consen 77 TFSSDDFMGEATIPLKPLLE 96 (168)
T ss_pred CCCcccccceeeeccHHHHH
Confidence 88899999999999999887
No 21
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.82 E-value=2.7e-19 Score=146.78 Aligned_cols=118 Identities=14% Similarity=0.241 Sum_probs=95.5
Q ss_pred EEEEEEEEecCCCCCCCCCCcceEEEEEEcCcc-eEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeecCCCC
Q 019724 5 ALDITVVSASDLKTAGMFSKMNVYAVVTIFGES-QTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRSTGGCF 83 (336)
Q Consensus 5 ~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~~-~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~d~~~ 83 (336)
.|.|+|++|++|...+..+++||||+|.+.+.. .||+++++ ++||+|||+|.|.+... ...|.|+|||++...
T Consensus 1 ~l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~v~~~-t~nP~Wne~f~~~~~~~-----~~~l~v~v~d~~~~~ 74 (121)
T cd04054 1 SLYIRIVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVWK-TLNPFWGEEYTVHLPPG-----FHTVSFYVLDEDTLS 74 (121)
T ss_pred CEEEEEEEeeCCcCCCCCCCCCceEEEEECCEeeeeeeeEcC-CCCCcccceEEEeeCCC-----CCEEEEEEEECCCCC
Confidence 389999999999999999999999999998754 69999655 79999999999998653 268999999997777
Q ss_pred CCcccEEEEEeceeeeccCCCCCCCCeeeeeeC--CCCCcceEEEEEEEE
Q 019724 84 GNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITT--PGGRAKGVLNVSYKF 131 (336)
Q Consensus 84 ~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~--~~g~~~G~L~lsl~~ 131 (336)
.|++||++.+.+.++.. ..... ..|+.|+. ...+..|+|+|++++
T Consensus 75 ~d~~iG~~~~~~~~~~~-~~~~~--~~W~~L~~~~~~~~~~G~i~l~~~~ 121 (121)
T cd04054 75 RDDVIGKVSLTREVISA-HPRGI--DGWMNLTEVDPDEEVQGEIHLELSV 121 (121)
T ss_pred CCCEEEEEEEcHHHhcc-CCCCC--CcEEECeeeCCCCccccEEEEEEEC
Confidence 89999999999988764 22222 24666643 455678999998863
No 22
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.82 E-value=1.1e-19 Score=147.66 Aligned_cols=93 Identities=14% Similarity=0.302 Sum_probs=79.8
Q ss_pred CccEEEEEEEEecCCCCCCCCCCcceEEEEEEcC----cceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEe
Q 019724 2 GSRALDITVVSASDLKTAGMFSKMNVYAVVTIFG----ESQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIR 77 (336)
Q Consensus 2 ~~g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~----~~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~ 77 (336)
..++|+|+|++|++|+ ..+.+||||+|+|.. .+++|+| +++|+||+|||+|.|+|..+. ..+.+|.|+||
T Consensus 12 ~~~~L~V~vikA~~L~---~~g~sDPYVKv~L~~~~k~~k~kT~v-~rktlnPvfnE~f~F~v~~~~--l~~~tL~~~V~ 85 (118)
T cd08677 12 QKAELHVNILEAENIS---VDAGCECYISGCVSVSEGQKEAQTAL-KKLALHTQWEEELVFPLPEEE--SLDGTLTLTLR 85 (118)
T ss_pred cCCEEEEEEEEecCCC---CCCCCCeEEEEEEcCCcCccEEEcce-ecCCCCCccccEEEEeCCHHH--hCCcEEEEEEE
Confidence 3579999999999998 246699999999975 2488998 556899999999999998764 35688999999
Q ss_pred ecCCCCCCcccEEEEEeceeeec
Q 019724 78 STGGCFGNSDLGEVFVPVKEMLL 100 (336)
Q Consensus 78 d~d~~~~d~~LG~~~v~L~~l~~ 100 (336)
|+|+..++++||++.++|+++..
T Consensus 86 d~Drfs~~d~IG~v~l~l~~~~~ 108 (118)
T cd08677 86 CCDRFSRHSTLGELRLKLADVSM 108 (118)
T ss_pred eCCCCCCCceEEEEEEccccccC
Confidence 99998899999999999998744
No 23
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.81 E-value=2.3e-19 Score=146.56 Aligned_cols=114 Identities=18% Similarity=0.387 Sum_probs=93.8
Q ss_pred EEEEEEEecCCCCCCCCCCcceEEEEEEcC---cceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeecCCC
Q 019724 6 LDITVVSASDLKTAGMFSKMNVYAVVTIFG---ESQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRSTGGC 82 (336)
Q Consensus 6 L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~---~~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~d~~ 82 (336)
|+|+|++|++|+..+..+++||||+|++.. ..+||++++ ++.||+|||+|.|.+.... ...|+|+|||+|..
T Consensus 2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~-~t~nP~Wne~f~f~i~~~~----~~~l~v~v~d~d~~ 76 (119)
T cd04036 2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIK-NSINPVWNETFEFRIQSQV----KNVLELTVMDEDYV 76 (119)
T ss_pred eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceec-CCCCCccceEEEEEeCccc----CCEEEEEEEECCCC
Confidence 789999999999988889999999999864 348999965 5799999999999986542 36799999999666
Q ss_pred CCCcccEEEEEeceeeeccCCCCCCCCeeeeeeCCCCCcceEEEEEEEEc
Q 019724 83 FGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITTPGGRAKGVLNVSYKFG 132 (336)
Q Consensus 83 ~~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~~~g~~~G~L~lsl~~~ 132 (336)
+|++||++.++|.++.. +. ....|+.|.. ..+|+|+|+|.+.
T Consensus 77 -~~~~iG~~~~~l~~l~~-g~---~~~~~~~L~~---~~~g~l~~~~~~~ 118 (119)
T cd04036 77 -MDDHLGTVLFDVSKLKL-GE---KVRVTFSLNP---QGKEELEVEFLLE 118 (119)
T ss_pred -CCcccEEEEEEHHHCCC-CC---cEEEEEECCC---CCCceEEEEEEee
Confidence 89999999999999875 22 1346788763 3589999988874
No 24
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.81 E-value=3.6e-19 Score=147.14 Aligned_cols=119 Identities=19% Similarity=0.341 Sum_probs=94.9
Q ss_pred ccEEEEEEEEecCCCCCCCCCCcceEEEEEEcCcc-eEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeecCC
Q 019724 3 SRALDITVVSASDLKTAGMFSKMNVYAVVTIFGES-QTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRSTGG 81 (336)
Q Consensus 3 ~g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~~-~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~d~ 81 (336)
.+.|+|+|++|++|+.. +.+||||+|++.+.. .||++ ++ +.||.|||+|.|.+.... ...|+|+|||+++
T Consensus 3 ~~~L~V~Vi~A~~L~~~---~~~DPYv~v~l~~~~~~kT~v-~~-~~nP~WnE~f~f~~~~~~----~~~l~v~v~d~~~ 73 (126)
T cd08400 3 VRSLQLNVLEAHKLPVK---HVPHPYCVISLNEVKVARTKV-RE-GPNPVWSEEFVFDDLPPD----VNSFTISLSNKAK 73 (126)
T ss_pred eeEEEEEEEEeeCCCCC---CCCCeeEEEEECCEeEEEeec-CC-CCCCccCCEEEEecCCCC----cCEEEEEEEECCC
Confidence 46899999999999875 368999999998754 68887 44 799999999999864432 2578999999977
Q ss_pred CCCCcccEEEEEeceeeeccCCCCCCCCeeeeeeCC---CCCcceEEEEEEEEccc
Q 019724 82 CFGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITTP---GGRAKGVLNVSYKFGPS 134 (336)
Q Consensus 82 ~~~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~~---~g~~~G~L~lsl~~~~~ 134 (336)
..+|++||++.|+|.++.. +. . ...||.|... ..+..|+|+|+|+|.+.
T Consensus 74 ~~~d~~iG~v~i~l~~l~~-~~-~--~~~W~~L~~~~~~~~~~~G~i~l~l~~~~~ 125 (126)
T cd08400 74 RSKDSEIAEVTVQLSKLQN-GQ-E--TDEWYPLSSASPLKGGEWGSLRIRARYSHE 125 (126)
T ss_pred CCCCCeEEEEEEEHhHccC-CC-c--ccEeEEcccCCCCCCCcCcEEEEEEEEEcc
Confidence 7789999999999999876 22 1 3467777653 24567999999999864
No 25
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.81 E-value=9e-19 Score=146.44 Aligned_cols=127 Identities=23% Similarity=0.287 Sum_probs=98.5
Q ss_pred EEEEEEEEecCCCCCCCCCCcceEEEEEEcCcceEEEEeeCCCCCCeeeeEEEEEecchh-----hhcCCcEEEEEEeec
Q 019724 5 ALDITVVSASDLKTAGMFSKMNVYAVVTIFGESQTTSVARDCGVRPTWNHQMRFNIDEAA-----AMQNNLTIVYSIRST 79 (336)
Q Consensus 5 ~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~~~kTkv~~~~t~nP~WnE~f~F~v~~~~-----~~~~~~~L~v~V~d~ 79 (336)
.|+|+|++|++|...+..+++||||+|++....+||++++ ++.||+|||+|.|.+.... ...+...|.|+|||+
T Consensus 2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~v~~-~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~ 80 (135)
T cd04017 2 QLRAYIYQARDLLAADKSGLSDPFARVSFLNQSQETEVIK-ETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQ 80 (135)
T ss_pred EEEEEEEEeecCcCCCCCCCCCCEEEEEECCeeeEeeeEc-CCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeC
Confidence 5899999999999999899999999999998889999964 5899999999999854321 111235799999999
Q ss_pred CCCCCCcccEEEEE-eceeeeccCCCCCCCCeeeeeeCCCCCcceEEEEEEEEccc
Q 019724 80 GGCFGNSDLGEVFV-PVKEMLLRSNGDDDKPMSYNITTPGGRAKGVLNVSYKFGPS 134 (336)
Q Consensus 80 d~~~~d~~LG~~~v-~L~~l~~~~~~~~~~~~~~~l~~~~g~~~G~L~lsl~~~~~ 134 (336)
|+..+|++||++.+ ++..+.. .........|+.|.+ .+..+|+|.|++++.+.
T Consensus 81 d~~~~d~~iG~~~i~~~~~~~~-~~~~~~~~~W~~L~~-~~~~~Geil~~~~~~~~ 134 (135)
T cd04017 81 DSVGKDEFLGRSVAKPLVKLDL-EEDFPPKLQWFPIYK-GGQSAGELLAAFELIEV 134 (135)
T ss_pred cCCCCCccceEEEeeeeeeccc-CCCCCCCceEEEeec-CCCchhheeEEeEEEEe
Confidence 77778999999987 4444433 111222457888864 45689999999998764
No 26
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.81 E-value=3.6e-19 Score=145.26 Aligned_cols=115 Identities=17% Similarity=0.248 Sum_probs=95.0
Q ss_pred cEEEEEEEEecCCCCCCC------CCCcceEEEEEEcCcceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEe
Q 019724 4 RALDITVVSASDLKTAGM------FSKMNVYAVVTIFGESQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIR 77 (336)
Q Consensus 4 g~L~V~vi~Ak~L~~~d~------~g~~dPYv~v~l~~~~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~ 77 (336)
|+|+|+|++|++|...+. .+++||||+|++....+||++++ ++.||+|||+|.|.+.... ...|+|+||
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~~~kT~~~~-~t~~P~W~e~f~~~v~~~~----~~~l~i~v~ 75 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIK-ENLNPKWNEVYEAVVDEVP----GQELEIELF 75 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCEeEEccccC-CCCCCcccceEEEEeCCCC----CCEEEEEEE
Confidence 679999999999998764 36799999999998889999954 5899999999999986532 478999999
Q ss_pred ecCCCCCCcccEEEEEeceeeeccCCCCCCCCeeeeeeCCCCCcceEEEEEEEE
Q 019724 78 STGGCFGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITTPGGRAKGVLNVSYKF 131 (336)
Q Consensus 78 d~d~~~~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~~~g~~~G~L~lsl~~ 131 (336)
|++.. +|++||++.|+|.++.. .+. ...||.|.. ...|+|+|+++|
T Consensus 76 d~~~~-~~~~iG~~~i~l~~l~~--~~~--~~~w~~L~~---~~~G~~~~~~~~ 121 (121)
T cd08391 76 DEDPD-KDDFLGRLSIDLGSVEK--KGF--IDEWLPLED---VKSGRLHLKLEW 121 (121)
T ss_pred ecCCC-CCCcEEEEEEEHHHhcc--cCc--cceEEECcC---CCCceEEEEEeC
Confidence 99655 89999999999999986 222 346788763 367999999875
No 27
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.81 E-value=7.1e-19 Score=146.35 Aligned_cols=119 Identities=15% Similarity=0.262 Sum_probs=97.3
Q ss_pred CCccEEEEEEEEecCCCCCCCC----------CCcceEEEEEEcCcc-eEEEEeeCCCCCCeeeeEEEEEecchhhhcCC
Q 019724 1 MGSRALDITVVSASDLKTAGMF----------SKMNVYAVVTIFGES-QTTSVARDCGVRPTWNHQMRFNIDEAAAMQNN 69 (336)
Q Consensus 1 m~~g~L~V~vi~Ak~L~~~d~~----------g~~dPYv~v~l~~~~-~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~ 69 (336)
|..|.|+|+|++|++|...+.. +.+||||+|++.+.. .||+++ +++.||+|||+|.|.+.. .
T Consensus 1 ~~~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~-~~t~~P~Wne~f~~~v~~------~ 73 (132)
T cd04014 1 MFTGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTK-PKTNSPVWNEEFTTEVHN------G 73 (132)
T ss_pred CcceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEc-CCCCCCCcceeEEEEcCC------C
Confidence 6789999999999999887752 578999999998766 688884 568999999999999963 3
Q ss_pred cEEEEEEeecCCCCCCcccEEEEEeceeeeccCCCCCCCCeeeeeeCCCCCcceEEEEEEEEcc
Q 019724 70 LTIVYSIRSTGGCFGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITTPGGRAKGVLNVSYKFGP 133 (336)
Q Consensus 70 ~~L~v~V~d~d~~~~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~~~g~~~G~L~lsl~~~~ 133 (336)
..|.|+|||++....|++||++.|+|+++...... ....|+.|. ..|+|+|+|+|..
T Consensus 74 ~~l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~--~~~~w~~L~-----~~G~l~l~~~~~~ 130 (132)
T cd04014 74 RNLELTVFHDAAIGPDDFVANCTISFEDLIQRGSG--SFDLWVDLE-----PQGKLHVKIELKG 130 (132)
T ss_pred CEEEEEEEeCCCCCCCceEEEEEEEhHHhcccCCC--cccEEEEcc-----CCcEEEEEEEEec
Confidence 68999999986666789999999999998862111 234678875 4699999999865
No 28
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.81 E-value=7.9e-19 Score=150.76 Aligned_cols=120 Identities=22% Similarity=0.382 Sum_probs=96.0
Q ss_pred CccEEEEEEEEecCCCCCCC------------------------------CCCcceEEEEEEcCcc-eEEEEeeCCCCCC
Q 019724 2 GSRALDITVVSASDLKTAGM------------------------------FSKMNVYAVVTIFGES-QTTSVARDCGVRP 50 (336)
Q Consensus 2 ~~g~L~V~vi~Ak~L~~~d~------------------------------~g~~dPYv~v~l~~~~-~kTkv~~~~t~nP 50 (336)
-+|+|+|+|++|++|..+|. .+++||||+|++.+.. .||++++ ++.||
T Consensus 5 lhG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~-~~~nP 83 (158)
T cd04015 5 LHGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIE-NSENP 83 (158)
T ss_pred EeeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeC-CCCCC
Confidence 37899999999999998762 4568999999998765 6999965 57999
Q ss_pred eeeeEEEEEecchhhhcCCcEEEEEEeecCCCCCCcccEEEEEeceeeeccCCCCCCCCeeeeeeCCCC---CcceEEEE
Q 019724 51 TWNHQMRFNIDEAAAMQNNLTIVYSIRSTGGCFGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITTPGG---RAKGVLNV 127 (336)
Q Consensus 51 ~WnE~f~F~v~~~~~~~~~~~L~v~V~d~d~~~~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~~~g---~~~G~L~l 127 (336)
+|||+|.|.+.... ..|+|+|||+ +.+++++||++.|+|+++.. +.. ...|+.|.+..+ +..++|+|
T Consensus 84 ~WnE~F~~~~~~~~-----~~l~~~V~d~-d~~~~~~IG~~~i~l~~l~~-g~~---~~~w~~L~~~~~~~~~~~~~l~v 153 (158)
T cd04015 84 VWNESFHIYCAHYA-----SHVEFTVKDN-DVVGAQLIGRAYIPVEDLLS-GEP---VEGWLPILDSNGKPPKPGAKIRV 153 (158)
T ss_pred ccceEEEEEccCCC-----CEEEEEEEeC-CCcCCcEEEEEEEEhHHccC-CCC---cceEEECcCCCCCCCCCCCEEEE
Confidence 99999999986542 6799999999 45578899999999999886 222 346788876322 33589999
Q ss_pred EEEEc
Q 019724 128 SYKFG 132 (336)
Q Consensus 128 sl~~~ 132 (336)
+++|.
T Consensus 154 ~~~f~ 158 (158)
T cd04015 154 SLQFT 158 (158)
T ss_pred EEEEC
Confidence 99984
No 29
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.80 E-value=3.1e-19 Score=146.16 Aligned_cols=105 Identities=13% Similarity=0.238 Sum_probs=83.4
Q ss_pred EEEEEEEEecCCCCCCCCCCcceEEEEEEcC----c---ceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEe
Q 019724 5 ALDITVVSASDLKTAGMFSKMNVYAVVTIFG----E---SQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIR 77 (336)
Q Consensus 5 ~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~----~---~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~ 77 (336)
+|+|+|++|++|+..+ .+++||||+|+|.+ . ++||++ +++++||+|||+|.|.|.... ......|.|+||
T Consensus 1 kL~V~Vi~A~~L~~~d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv-~~~tlnPvwNE~f~F~v~~~~-~~~~~~L~~~V~ 77 (120)
T cd08395 1 KVTVKVVAANDLKWQT-TGMFRPFVEVNLIGPHLSDKKRKFATKS-KNNNWSPKYNETFQFILGNED-DPESYELHICVK 77 (120)
T ss_pred CEEEEEEECcCCCccc-CCCCCCEEEEEEecCCCcccccEeeeEE-ecCCCCCccCcEEEEEeeCcC-CCceeEEEEEEE
Confidence 5899999999999887 48999999999842 2 267888 467899999999999997542 234567999999
Q ss_pred ecCCCCCCcccEEEEEeceeeeccCCCCCCCCeeeeeeC
Q 019724 78 STGGCFGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITT 116 (336)
Q Consensus 78 d~d~~~~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~ 116 (336)
|+|...+|++||++.|+|+++.. .+. ...|+.|..
T Consensus 78 D~d~~~~dd~IG~~~l~l~~~~~--~~~--~~~w~~L~~ 112 (120)
T cd08395 78 DYCFARDDRLVGVTVLQLRDIAQ--AGS--CACWLPLGR 112 (120)
T ss_pred EecccCCCCEEEEEEEEHHHCcC--CCc--EEEEEECcC
Confidence 99655579999999999999986 222 346777754
No 30
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.80 E-value=8.7e-19 Score=144.20 Aligned_cols=116 Identities=20% Similarity=0.304 Sum_probs=93.0
Q ss_pred EEEEEEEEecCCCCCCCCCCcceEEEEEEc-CcceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeecCCCC
Q 019724 5 ALDITVVSASDLKTAGMFSKMNVYAVVTIF-GESQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRSTGGCF 83 (336)
Q Consensus 5 ~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~-~~~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~d~~~ 83 (336)
+|+|+|++|++|...+.++++||||+|++. ...+||++++ ++.||+|||+|.|.+.. ...|.|+|||++...
T Consensus 1 ~l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~~kT~v~~-~t~nP~Wne~f~~~~~~------~~~l~i~V~d~~~~~ 73 (123)
T cd08382 1 KVRLTVLCADGLAKRDLFRLPDPFAVITVDGGQTHSTDVAK-KTLDPKWNEHFDLTVGP------SSIITIQVFDQKKFK 73 (123)
T ss_pred CeEEEEEEecCCCccCCCCCCCcEEEEEECCccceEccEEc-CCCCCcccceEEEEeCC------CCEEEEEEEECCCCC
Confidence 489999999999999988999999999997 4558999954 57999999999999965 368999999995554
Q ss_pred C--CcccEEEEEeceeeeccCCCCCCCCeeeeeeCC----CCCcceEEEEEEE
Q 019724 84 G--NSDLGEVFVPVKEMLLRSNGDDDKPMSYNITTP----GGRAKGVLNVSYK 130 (336)
Q Consensus 84 ~--d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~~----~g~~~G~L~lsl~ 130 (336)
. |++||++.|+|.+|+..... ...|+.|++. .+...|+|.++++
T Consensus 74 ~~~d~~lG~~~i~l~~l~~~~~~---~~~~~~l~~~~~~~~~~~~G~v~~~~~ 123 (123)
T cd08382 74 KKDQGFLGCVRIRANAVLPLKDT---GYQRLDLRKLKKSDNLSVRGKIVVSLS 123 (123)
T ss_pred CCCCceEeEEEEEHHHccccCCC---ccceeEeecCCCCCCceEeeEEEEEeC
Confidence 3 57999999999999863322 1246666542 3556899988763
No 31
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.80 E-value=6.2e-19 Score=145.01 Aligned_cols=94 Identities=22% Similarity=0.273 Sum_probs=80.4
Q ss_pred ccEEEEEEEEecCCCCCCCCCCcceEEEEEEcCc-----ceEEEEeeCCCCCCeeeeEEEEEe-cchhhhcCCcEEEEEE
Q 019724 3 SRALDITVVSASDLKTAGMFSKMNVYAVVTIFGE-----SQTTSVARDCGVRPTWNHQMRFNI-DEAAAMQNNLTIVYSI 76 (336)
Q Consensus 3 ~g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~-----~~kTkv~~~~t~nP~WnE~f~F~v-~~~~~~~~~~~L~v~V 76 (336)
.++|+|+|++|++|...+ .+.+||||+|++... ++||++++ +++||+|||+|.|.+ .... .....|+|+|
T Consensus 12 ~~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~-~~~nP~wnE~F~f~~~~~~~--l~~~~L~~~V 87 (122)
T cd08381 12 NGTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVR-KTRNPTFNEMLVYDGLPVED--LQQRVLQVSV 87 (122)
T ss_pred CCEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccC-CCCCCCcccEEEEecCChHH--hCCCEEEEEE
Confidence 468999999999999998 889999999999742 48899955 579999999999997 3332 2457899999
Q ss_pred eecCCCCCCcccEEEEEeceeeec
Q 019724 77 RSTGGCFGNSDLGEVFVPVKEMLL 100 (336)
Q Consensus 77 ~d~d~~~~d~~LG~~~v~L~~l~~ 100 (336)
||+|...++++||++.|+|+++..
T Consensus 88 ~d~d~~~~~~~lG~~~i~l~~l~~ 111 (122)
T cd08381 88 WSHDSLVENEFLGGVCIPLKKLDL 111 (122)
T ss_pred EeCCCCcCCcEEEEEEEecccccc
Confidence 999777789999999999999886
No 32
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.79 E-value=1.8e-18 Score=143.12 Aligned_cols=113 Identities=18% Similarity=0.285 Sum_probs=92.5
Q ss_pred EEEEEEEEecCCCCCCCCCCcceEEEEEEcCcceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeecCCC--
Q 019724 5 ALDITVVSASDLKTAGMFSKMNVYAVVTIFGESQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRSTGGC-- 82 (336)
Q Consensus 5 ~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~d~~-- 82 (336)
+|+|+|++|++|...+..+++||||+|.+.....+|++++ ++.||+|||+|.|.+... ...|.|+|||+|..
T Consensus 2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~v~-~t~~P~Wne~f~f~~~~~-----~~~l~i~v~d~d~~~~ 75 (127)
T cd04027 2 KISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIP-QNLNPVWNEKFHFECHNS-----SDRIKVRVWDEDDDIK 75 (127)
T ss_pred eEEEEEEECcCCcCCCCCCCcCcEEEEEECCEeeecceec-CCCCCccceEEEEEecCC-----CCEEEEEEEECCCCcc
Confidence 6999999999999999889999999999988789999954 589999999999988543 25799999999642
Q ss_pred ---------CCCcccEEEEEeceeeeccCCCCCCCCeeeeeeCC--CCCcceEEEEEE
Q 019724 83 ---------FGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITTP--GGRAKGVLNVSY 129 (336)
Q Consensus 83 ---------~~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~~--~g~~~G~L~lsl 129 (336)
..|++||++.|+|.++.. . ...||.|.++ ....+|+|+|+|
T Consensus 76 ~~~~~~~~~~~~~~iG~~~i~l~~~~~--~----~~~w~~L~~~~~~~~~~G~i~~~~ 127 (127)
T cd04027 76 SRLKQKFTRESDDFLGQTIIEVRTLSG--E----MDVWYNLEKRTDKSAVSGAIRLHI 127 (127)
T ss_pred cccceeccccCCCcceEEEEEhHHccC--C----CCeEEECccCCCCCcEeEEEEEEC
Confidence 258999999999988653 1 2367777653 345799999875
No 33
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.79 E-value=8.7e-19 Score=148.74 Aligned_cols=106 Identities=22% Similarity=0.333 Sum_probs=82.7
Q ss_pred EEEEEEEEecCCCCCCCCCCcceEEEEEEcC-----cceEEEEeeCCCCCCeeeeEEEEEecch-----------hhhcC
Q 019724 5 ALDITVVSASDLKTAGMFSKMNVYAVVTIFG-----ESQTTSVARDCGVRPTWNHQMRFNIDEA-----------AAMQN 68 (336)
Q Consensus 5 ~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~-----~~~kTkv~~~~t~nP~WnE~f~F~v~~~-----------~~~~~ 68 (336)
+|+|+|++|++|.. ..+.+||||+|++.. .++||++++ +++||+|||+|.|.+... ..+..
T Consensus 1 kL~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~~~k~~~~kT~v~~-~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~ 77 (148)
T cd04010 1 KLSVRVIECSDLAL--KNGTCDPYASVTLIYSNKKQDTKRTKVKK-KTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAE 77 (148)
T ss_pred CEEEEEEeCcCCCC--CCCCCCceEEEEEeCCcccCcccCCccEe-CCCCCccceEEEEEEecccccccccccCCccccc
Confidence 58999999999987 468899999999987 458999955 589999999999999511 10112
Q ss_pred CcEEEEEEeecCCCCCCcccEEEEEeceeeeccCCCCCCCCeeeeeeC
Q 019724 69 NLTIVYSIRSTGGCFGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITT 116 (336)
Q Consensus 69 ~~~L~v~V~d~d~~~~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~ 116 (336)
...|.|+|||++...+|+|||++.|+|.+|... ... ...||.|..
T Consensus 78 ~~~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~-~~~--~~~W~~L~~ 122 (148)
T cd04010 78 KLELRVDLWHASMGGGDVFLGEVRIPLRGLDLQ-AGS--HQAWYFLQP 122 (148)
T ss_pred EEEEEEEEEcCCCCCCCceeEEEEEeccccccc-CCc--CcceeecCC
Confidence 367999999996666899999999999998862 111 346777754
No 34
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.79 E-value=2.4e-18 Score=142.17 Aligned_cols=120 Identities=18% Similarity=0.302 Sum_probs=98.1
Q ss_pred EEEecCCCCCCCCCCcceEEEEEEcCcceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeecCCCCCCcccE
Q 019724 10 VVSASDLKTAGMFSKMNVYAVVTIFGESQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRSTGGCFGNSDLG 89 (336)
Q Consensus 10 vi~Ak~L~~~d~~g~~dPYv~v~l~~~~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~d~~~~d~~LG 89 (336)
|++|++|.. ..+++||||+|++....+||++++ ++.||+|||+|.|.+.... .....|+|+|||++...+|++||
T Consensus 2 vi~a~~L~~--~~g~~Dpyv~v~~~~~~~kT~v~~-~~~nP~Wne~f~f~~~~~~--~~~~~l~~~v~d~~~~~~d~~iG 76 (127)
T cd08373 2 VVSLKNLPG--LKGKGDRIAKVTFRGVKKKTRVLE-NELNPVWNETFEWPLAGSP--DPDESLEIVVKDYEKVGRNRLIG 76 (127)
T ss_pred eEEeeCCcc--cCCCCCCEEEEEECCEeeecceeC-CCcCCcccceEEEEeCCCc--CCCCEEEEEEEECCCCCCCceEE
Confidence 789999988 678999999999998889999965 5799999999999996542 23578999999997766899999
Q ss_pred EEEEeceeeeccCCCCCCCCeeeeeeCCCCC-cceEEEEEEEEcccCCCC
Q 019724 90 EVFVPVKEMLLRSNGDDDKPMSYNITTPGGR-AKGVLNVSYKFGPSSSAN 138 (336)
Q Consensus 90 ~~~v~L~~l~~~~~~~~~~~~~~~l~~~~g~-~~G~L~lsl~~~~~~~~~ 138 (336)
++.++|.++.. ... ...|+.|.+.+++ ..|+|+|+++|.+.....
T Consensus 77 ~~~~~l~~l~~--~~~--~~~~~~L~~~~~~~~~~~l~l~~~~~~~~~~~ 122 (127)
T cd08373 77 SATVSLQDLVS--EGL--LEVTEPLLDSNGRPTGATISLEVSYQPPDGAV 122 (127)
T ss_pred EEEEEhhHccc--CCc--eEEEEeCcCCCCCcccEEEEEEEEEeCCCCcc
Confidence 99999999986 221 3467888754444 479999999999876544
No 35
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.79 E-value=1.5e-18 Score=143.88 Aligned_cols=108 Identities=19% Similarity=0.337 Sum_probs=87.2
Q ss_pred ccEEEEEEEEecCCCCCCCC-CCcceEEEEEEcCc-----ceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEE
Q 019724 3 SRALDITVVSASDLKTAGMF-SKMNVYAVVTIFGE-----SQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSI 76 (336)
Q Consensus 3 ~g~L~V~vi~Ak~L~~~d~~-g~~dPYv~v~l~~~-----~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V 76 (336)
.++|+|+|++|+||...+.. +.+||||+|++... ++||+++ +++.||+|||+|.|.|....+ ....|.|+|
T Consensus 14 ~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~-~~t~nPvfNE~F~f~v~~~~l--~~~~L~v~V 90 (128)
T cd08392 14 TSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVK-KGTVNPVFNETLKYVVEADLL--SSRQLQVSV 90 (128)
T ss_pred CCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccc-cCCCCCccceEEEEEcCHHHh--CCcEEEEEE
Confidence 57899999999999988865 89999999999753 3789985 558999999999999876532 457899999
Q ss_pred eecCCCCCCcccEEEEEeceeeeccCCCCCCCCeeeee
Q 019724 77 RSTGGCFGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNI 114 (336)
Q Consensus 77 ~d~d~~~~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l 114 (336)
||+++..++++||++.|+|+++... +...+...||.|
T Consensus 91 ~~~~~~~~~~~lG~~~i~L~~~~~~-~~~~~~~~W~~l 127 (128)
T cd08392 91 WHSRTLKRRVFLGEVLIPLADWDFE-DTDSQRFLWYPL 127 (128)
T ss_pred EeCCCCcCcceEEEEEEEcCCcccC-CCCccccceEEC
Confidence 9997767899999999999998552 222234567765
No 36
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.79 E-value=9.6e-19 Score=140.83 Aligned_cols=93 Identities=17% Similarity=0.235 Sum_probs=80.2
Q ss_pred cEEEEEEEEecCCCCCCCC----CCcceEEEEEEcCcceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeec
Q 019724 4 RALDITVVSASDLKTAGMF----SKMNVYAVVTIFGESQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRST 79 (336)
Q Consensus 4 g~L~V~vi~Ak~L~~~d~~----g~~dPYv~v~l~~~~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~ 79 (336)
|+|.|+|++|++|+..+.. .++||||+|++....+||++++ ++.||+|||+|.|.+.... ....|.|+|||+
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~~kT~v~~-~t~nPvWne~f~f~v~~~~---~~~~L~~~V~D~ 76 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRVFRTSWRR-HTLNPVFNERLAFEVYPHE---KNFDIQFKVLDK 76 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECCEeEeeeeec-CCCCCcccceEEEEEeCcc---CCCEEEEEEEEC
Confidence 6899999999999987643 3489999999988889999965 5799999999999986542 236899999999
Q ss_pred CCCCCCcccEEEEEeceeeec
Q 019724 80 GGCFGNSDLGEVFVPVKEMLL 100 (336)
Q Consensus 80 d~~~~d~~LG~~~v~L~~l~~ 100 (336)
|+..+|++||++.|+|++|+.
T Consensus 77 d~~~~dd~IG~~~l~L~~l~~ 97 (108)
T cd04039 77 DKFSFNDYVATGSLSVQELLN 97 (108)
T ss_pred CCCCCCcceEEEEEEHHHHHh
Confidence 777789999999999999987
No 37
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.78 E-value=2.5e-18 Score=141.39 Aligned_cols=108 Identities=18% Similarity=0.419 Sum_probs=88.8
Q ss_pred cEEEEEEEEecCCCCCCCCCCcceEEEEEEcCcceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeecCCCC
Q 019724 4 RALDITVVSASDLKTAGMFSKMNVYAVVTIFGESQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRSTGGCF 83 (336)
Q Consensus 4 g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~d~~~ 83 (336)
|+|+|+|++|++|+..+..+++||||+|++....++|+++++++.||+|||+|.|.+..... .....|.|+|||++...
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~-~~~~~l~v~V~d~~~~~ 79 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGW-GGDTKLILRIMDKDNFS 79 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCCcCceEEEEECCEeeeeeEcCCCCCCCcccceEEEEecCccc-CCCCEEEEEEEECccCC
Confidence 68999999999999988889999999999988888999866568999999999999976521 12468999999996666
Q ss_pred CCcccEEEEEeceeeeccCCCCCCCCeeeeeeC
Q 019724 84 GNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITT 116 (336)
Q Consensus 84 ~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~ 116 (336)
+|++||++.|+|.+++. .+.. ..|+.|+.
T Consensus 80 ~d~~iG~~~i~l~~l~~--~~~~--~~~~~l~p 108 (124)
T cd04049 80 DDDFIGEATIHLKGLFE--EGVE--PGTAELVP 108 (124)
T ss_pred CCCeEEEEEEEhHHhhh--CCCC--cCceEeec
Confidence 89999999999999987 2222 34566554
No 38
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.77 E-value=2.1e-18 Score=139.38 Aligned_cols=95 Identities=17% Similarity=0.252 Sum_probs=80.6
Q ss_pred cEEEEEEEEecCCCCCCCC-CCcceEEEEEEcCc---ceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeec
Q 019724 4 RALDITVVSASDLKTAGMF-SKMNVYAVVTIFGE---SQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRST 79 (336)
Q Consensus 4 g~L~V~vi~Ak~L~~~d~~-g~~dPYv~v~l~~~---~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~ 79 (336)
|+|+|+|++|++|...+.. +++||||+|++... ..||++++ ++.||+|||+|.|.+....+ .....|+|+|||+
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~-~t~nP~Wne~f~f~~~~~~~-~~~~~l~~~V~d~ 78 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIR-KDLNPVWEETWFVLVTPDEV-KAGERLSCRLWDS 78 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeEC-CCCCCccceeEEEEeCchhc-cCCCEEEEEEEeC
Confidence 6899999999999998887 89999999998543 38999955 57999999999998865421 1246899999999
Q ss_pred CCCCCCcccEEEEEeceeeec
Q 019724 80 GGCFGNSDLGEVFVPVKEMLL 100 (336)
Q Consensus 80 d~~~~d~~LG~~~v~L~~l~~ 100 (336)
|+..+|++||+++|+|.+|+.
T Consensus 79 d~~~~dd~lG~~~i~l~~l~~ 99 (111)
T cd04041 79 DRFTADDRLGRVEIDLKELIE 99 (111)
T ss_pred CCCCCCCcceEEEEEHHHHhc
Confidence 777789999999999999985
No 39
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.77 E-value=6.5e-18 Score=139.45 Aligned_cols=118 Identities=25% Similarity=0.350 Sum_probs=94.7
Q ss_pred cEEEEEEEEecCCCCCCCCCCcceEEEEEEcCc-ceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeecCCC
Q 019724 4 RALDITVVSASDLKTAGMFSKMNVYAVVTIFGE-SQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRSTGGC 82 (336)
Q Consensus 4 g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~-~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~d~~ 82 (336)
..|+|+|++|+ |...+..+++||||+|++.+. ..||+++ +++.||+|||+|.|.+.. ...|.|+|||++..
T Consensus 2 ~~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~~~~~~kT~v~-~~t~~P~Wne~f~~~~~~------~~~l~~~V~d~~~~ 73 (125)
T cd04021 2 SQLQITVESAK-LKSNSKSFKPDPYVEVTVDGQPPKKTEVS-KKTSNPKWNEHFTVLVTP------QSTLEFKVWSHHTL 73 (125)
T ss_pred ceEEEEEEeeE-CCCCCcCCCCCeEEEEEECCcccEEeeee-CCCCCCccccEEEEEeCC------CCEEEEEEEeCCCC
Confidence 47999999999 555555788999999999877 6899985 568999999999999854 26899999999776
Q ss_pred CCCcccEEEEEeceeeeccCCCCCC-CCeeeeeeCCC---CCcceEEEEEE
Q 019724 83 FGNSDLGEVFVPVKEMLLRSNGDDD-KPMSYNITTPG---GRAKGVLNVSY 129 (336)
Q Consensus 83 ~~d~~LG~~~v~L~~l~~~~~~~~~-~~~~~~l~~~~---g~~~G~L~lsl 129 (336)
..|++||+++++|.+++....+..+ .+.|+.+.+.+ +...|+|++++
T Consensus 74 ~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 124 (125)
T cd04021 74 KADVLLGEASLDLSDILKNHNGKLENVKLTLNLSSENKGSSVKVGELTVIL 124 (125)
T ss_pred CCCcEEEEEEEEHHHhHhhcCCCccceEEEEEEEccCCCcceeeeeEEEEe
Confidence 6899999999999999874443332 33578887533 36789998876
No 40
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.77 E-value=5.1e-18 Score=139.24 Aligned_cols=100 Identities=19% Similarity=0.337 Sum_probs=81.2
Q ss_pred cEEEEEEEEecCCCCCCCCCCcceEEEEEEcCcceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeecCCCC
Q 019724 4 RALDITVVSASDLKTAGMFSKMNVYAVVTIFGESQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRSTGGCF 83 (336)
Q Consensus 4 g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~d~~~ 83 (336)
+.|.|+|++||+|...+ ..||||+|.+++.+.+|+++++ .||+|||+|.|.+.+. ...|+|+|||+ +.+
T Consensus 2 ~~L~V~Vv~Ar~L~~~~---~~dPYV~Ik~g~~k~kT~v~~~--~nP~WnE~F~F~~~~~-----~~~L~v~V~dk-d~~ 70 (127)
T cd08394 2 SLLCVLVKKAKLDGAPD---KFNTYVTLKVQNVKSTTIAVRG--SQPCWEQDFMFEINRL-----DLGLVIELWNK-GLI 70 (127)
T ss_pred ceEEEEEEEeeCCCCCC---CCCCeEEEEECCEEeEeeECCC--CCCceeeEEEEEEcCC-----CCEEEEEEEeC-CCc
Confidence 58999999999997655 4589999999998889998543 5999999999999654 25599999999 466
Q ss_pred CCcccEEEEEeceeeeccCCCCCCCCeeeeeeC
Q 019724 84 GNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITT 116 (336)
Q Consensus 84 ~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~ 116 (336)
+||+||+++|+|+++..+... -...||.|..
T Consensus 71 ~DD~lG~v~i~L~~v~~~~~~--~~~~Wy~L~~ 101 (127)
T cd08394 71 WDTLVGTVWIPLSTIRQSNEE--GPGEWLTLDS 101 (127)
T ss_pred CCCceEEEEEEhHHcccCCCC--CCCccEecCh
Confidence 999999999999999874321 1246777764
No 41
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.77 E-value=5.4e-18 Score=143.35 Aligned_cols=105 Identities=17% Similarity=0.193 Sum_probs=84.5
Q ss_pred ccEEEEEEEEecCCCCCC-CCCCcceEEEEEEcCc-----ceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEE
Q 019724 3 SRALDITVVSASDLKTAG-MFSKMNVYAVVTIFGE-----SQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSI 76 (336)
Q Consensus 3 ~g~L~V~vi~Ak~L~~~d-~~g~~dPYv~v~l~~~-----~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V 76 (336)
.++|+|+|++|+||...+ ..+.+||||+++|... ++||+++ ++++||+|||+|.|.+. . .+..|.|+|
T Consensus 28 ~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~-kktlnPvfNE~F~f~v~-l----~~~~L~v~V 101 (146)
T cd04028 28 KGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIA-RKTLDPLYQQQLVFDVS-P----TGKTLQVIV 101 (146)
T ss_pred CCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceec-CCCCCCccCCeEEEEEc-C----CCCEEEEEE
Confidence 578999999999998764 5678999999999753 4799995 56899999999999997 2 357899999
Q ss_pred e-ecCCCCCCcccEEEEEeceeeeccCCCCCCCCeeeeeeCC
Q 019724 77 R-STGGCFGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITTP 117 (336)
Q Consensus 77 ~-d~d~~~~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~~ 117 (336)
| |+++..++++||++.|+|+++.. .. ....||.|...
T Consensus 102 ~~d~~~~~~~~~iG~~~i~L~~l~~-~~---~~~~Wy~L~~~ 139 (146)
T cd04028 102 WGDYGRMDKKVFMGVAQILLDDLDL-SN---LVIGWYKLFPT 139 (146)
T ss_pred EeCCCCCCCCceEEEEEEEcccccC-CC---CceeEEecCCc
Confidence 9 56555588999999999999754 12 13468888753
No 42
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.76 E-value=1.1e-17 Score=140.28 Aligned_cols=116 Identities=22% Similarity=0.377 Sum_probs=90.9
Q ss_pred EEEEEEEEecCCCCCCCCCCcceEEEEEEcC-------------cceEEEEeeCCCCCCee-eeEEEEEecchhhhcCCc
Q 019724 5 ALDITVVSASDLKTAGMFSKMNVYAVVTIFG-------------ESQTTSVARDCGVRPTW-NHQMRFNIDEAAAMQNNL 70 (336)
Q Consensus 5 ~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~-------------~~~kTkv~~~~t~nP~W-nE~f~F~v~~~~~~~~~~ 70 (336)
++.|++++|++|+ .+.++++||||+|++.. +.+||+++ ++++||+| ||+|.|.+... .
T Consensus 2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~-~~tlnP~W~nE~f~f~v~~~------~ 73 (137)
T cd08691 2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIV-ENTINPVWHREQFVFVGLPT------D 73 (137)
T ss_pred EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeE-cCCCCCceEceEEEEEcCCC------C
Confidence 5789999999998 67789999999999963 24899985 56899999 99999998532 5
Q ss_pred EEEEEEeecCCCC---CCcccEEEEEeceeeeccCCCCCCCCeeeeeeC--CCCCcceEEEEEE
Q 019724 71 TIVYSIRSTGGCF---GNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITT--PGGRAKGVLNVSY 129 (336)
Q Consensus 71 ~L~v~V~d~d~~~---~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~--~~g~~~G~L~lsl 129 (336)
.|+|+|||++... .|++||++.|+|.+|+..... .+...++.|.+ ..+.+.|+|.|.+
T Consensus 74 ~L~v~V~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~-~~~~~~~~l~k~~~~s~v~G~~~l~~ 136 (137)
T cd08691 74 VLEIEVKDKFAKSRPIIRRFLGKLSIPVQRLLERHAI-GDQELSYTLGRRTPTDHVSGQLTFRF 136 (137)
T ss_pred EEEEEEEecCCCCCccCCceEEEEEEEHHHhcccccC-CceEEEEECCcCCCCCcEEEEEEEEe
Confidence 7999999984433 279999999999999873322 22445677765 3456789998876
No 43
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.76 E-value=3.1e-18 Score=136.97 Aligned_cols=102 Identities=19% Similarity=0.300 Sum_probs=85.2
Q ss_pred EEEEEEEEecCCCCCCCCCCcceEEEEEEcCcceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeecCCCCC
Q 019724 5 ALDITVVSASDLKTAGMFSKMNVYAVVTIFGESQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRSTGGCFG 84 (336)
Q Consensus 5 ~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~d~~~~ 84 (336)
.|.|+|++|++|+..+..+.+||||+|++.+..+||+++ +++.||+|||+|.|.+.... ...|+|+|||++.
T Consensus 1 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~v~-~~t~nP~Wne~f~f~v~~~~----~~~l~v~v~d~~~--- 72 (105)
T cd04050 1 LLFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVK-ERTNNPVWEEGFTFLVRNPE----NQELEIEVKDDKT--- 72 (105)
T ss_pred CEEEEEeeecCCCCcccCCCCCcEEEEEECCEEEeCccc-cCCCCCcccceEEEEeCCCC----CCEEEEEEEECCC---
Confidence 389999999999998888999999999999988999995 46899999999999997642 3689999999843
Q ss_pred CcccEEEEEeceeeeccCCCCCCCCeeeeeeC
Q 019724 85 NSDLGEVFVPVKEMLLRSNGDDDKPMSYNITT 116 (336)
Q Consensus 85 d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~ 116 (336)
|++||++.|+|.+|.... ......||.|.+
T Consensus 73 ~~~iG~~~i~l~~l~~~~--~~~~~~w~~L~~ 102 (105)
T cd04050 73 GKSLGSLTLPLSELLKEP--DLTLDQPFPLDN 102 (105)
T ss_pred CCccEEEEEEHHHhhccc--cceeeeeEecCC
Confidence 889999999999998632 122346788764
No 44
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.76 E-value=4.7e-18 Score=140.31 Aligned_cols=105 Identities=23% Similarity=0.327 Sum_probs=85.5
Q ss_pred ccEEEEEEEEecCCCCCCCC-CCcceEEEEEEcCc-----ceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEE
Q 019724 3 SRALDITVVSASDLKTAGMF-SKMNVYAVVTIFGE-----SQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSI 76 (336)
Q Consensus 3 ~g~L~V~vi~Ak~L~~~d~~-g~~dPYv~v~l~~~-----~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V 76 (336)
.++|+|+|++|+||...+.. +.+||||+|++... ++||+++ +++.||+|||+|.|.+....+ ....|.|+|
T Consensus 14 ~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~-~~t~nP~~nE~f~f~v~~~~l--~~~~L~~~V 90 (125)
T cd08393 14 LRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVK-KKTLNPVFNETLRYKVEREEL--PTRVLNLSV 90 (125)
T ss_pred CCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccC-cCCCCCccCceEEEECCHHHh--CCCEEEEEE
Confidence 46899999999999998875 78999999999643 3799995 557999999999999876532 457899999
Q ss_pred eecCCCCCCcccEEEEEeceeeeccCCCCCCCCeeeee
Q 019724 77 RSTGGCFGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNI 114 (336)
Q Consensus 77 ~d~d~~~~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l 114 (336)
||+|+..++++||++.|+|.++... . . ...||.|
T Consensus 91 ~d~~~~~~~~~iG~~~i~L~~~~~~-~-~--~~~W~~L 124 (125)
T cd08393 91 WHRDSLGRNSFLGEVEVDLGSWDWS-N-T--QPTWYPL 124 (125)
T ss_pred EeCCCCCCCcEeEEEEEecCccccC-C-C--CcceEEC
Confidence 9997777899999999999998652 2 1 3356665
No 45
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.76 E-value=1.3e-17 Score=137.34 Aligned_cols=119 Identities=13% Similarity=0.179 Sum_probs=95.0
Q ss_pred EEEEEEEEecCCCCCCCCCCcceEEEEEEcCc---ceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeecCC
Q 019724 5 ALDITVVSASDLKTAGMFSKMNVYAVVTIFGE---SQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRSTGG 81 (336)
Q Consensus 5 ~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~---~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~d~ 81 (336)
.|+|+|++|++|+..+..+++||||+|.+... ..||++++ ++.||+|||+|.|.+.... ...|.|+|||++.
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~-~t~~P~Wne~f~f~i~~~~----~~~L~i~v~d~d~ 76 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIY-DTLNPRWDEEFELEVPAGE----PLWISATVWDRSF 76 (126)
T ss_pred EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEec-CCCCCcccceEEEEcCCCC----CCEEEEEEEECCC
Confidence 58999999999999988899999999998754 37999965 5799999999999997642 4689999999966
Q ss_pred CCCCcccEEEEEeceeeeccCCCCCCCCeeeeeeCCCCCcceEEEEEEEEccc
Q 019724 82 CFGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITTPGGRAKGVLNVSYKFGPS 134 (336)
Q Consensus 82 ~~~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~~~g~~~G~L~lsl~~~~~ 134 (336)
...+++||+++|.|.++....++. ....|+.|.. .|+|+|.|.+...
T Consensus 77 ~~~~~~iG~~~i~l~~~~~~~~~~-~~~~w~~l~~-----~g~i~l~~~~~~~ 123 (126)
T cd04043 77 VGKHDLCGRASLKLDPKRFGDDGL-PREIWLDLDT-----QGRLLLRVSMEGE 123 (126)
T ss_pred CCCCceEEEEEEecCHHHcCCCCC-CceEEEEcCC-----CCeEEEEEEEeee
Confidence 668999999999998865422122 2346778752 6899999888653
No 46
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.76 E-value=7.6e-18 Score=135.98 Aligned_cols=105 Identities=17% Similarity=0.142 Sum_probs=83.9
Q ss_pred EEEEEEEEecCCCCCCCCCCcceEEEEEEcCcceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeecCCCCC
Q 019724 5 ALDITVVSASDLKTAGMFSKMNVYAVVTIFGESQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRSTGGCFG 84 (336)
Q Consensus 5 ~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~d~~~~ 84 (336)
.|+|+|++|++|. .+++||||+|++.++++||+++ +++.||+|||+|.|.+.....+..+..|+|+|||++...+
T Consensus 5 ~l~V~v~~a~~L~----~~~~dpyv~v~~~~~~~kT~~~-~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~~~~ 79 (111)
T cd04011 5 QVRVRVIEARQLV----GGNIDPVVKVEVGGQKKYTSVK-KGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRSLRS 79 (111)
T ss_pred EEEEEEEEcccCC----CCCCCCEEEEEECCEeeeeeEE-eccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCccccc
Confidence 5899999999998 4679999999999988999995 4579999999999998554323335689999999966668
Q ss_pred CcccEEEEEeceeeeccCCCCCCCCeeeeee
Q 019724 85 NSDLGEVFVPVKEMLLRSNGDDDKPMSYNIT 115 (336)
Q Consensus 85 d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~ 115 (336)
|++||+++|+|+++...... .....|+.|.
T Consensus 80 ~~~iG~~~i~l~~v~~~~~~-~~~~~w~~L~ 109 (111)
T cd04011 80 DTLIGSFKLDVGTVYDQPDH-AFLRKWLLLT 109 (111)
T ss_pred CCccEEEEECCccccCCCCC-cceEEEEEee
Confidence 99999999999999763221 1134577775
No 47
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.76 E-value=8.9e-18 Score=138.67 Aligned_cols=96 Identities=19% Similarity=0.306 Sum_probs=80.7
Q ss_pred CccEEEEEEEEecCCCCCCC-CCCcceEEEEEEcCc-----ceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEE
Q 019724 2 GSRALDITVVSASDLKTAGM-FSKMNVYAVVTIFGE-----SQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYS 75 (336)
Q Consensus 2 ~~g~L~V~vi~Ak~L~~~d~-~g~~dPYv~v~l~~~-----~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~ 75 (336)
..++|+|+|++|++|...+. .+++||||+|++... ++||+++ ++++||+|||+|.|.|....+ .+..|.|+
T Consensus 13 ~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~-~~t~nP~wnE~f~f~i~~~~l--~~~~L~~~ 89 (125)
T cd04029 13 KTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIK-RNTTNPVYNETLKYSISHSQL--ETRTLQLS 89 (125)
T ss_pred CCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeee-eCCCCCcccceEEEECCHHHh--CCCEEEEE
Confidence 35789999999999987764 478999999999642 3789985 458999999999999976532 34689999
Q ss_pred EeecCCCCCCcccEEEEEeceeeec
Q 019724 76 IRSTGGCFGNSDLGEVFVPVKEMLL 100 (336)
Q Consensus 76 V~d~d~~~~d~~LG~~~v~L~~l~~ 100 (336)
|||+|...++++||++.|+|.++..
T Consensus 90 V~d~~~~~~~~~lG~~~i~l~~~~~ 114 (125)
T cd04029 90 VWHYDRFGRNTFLGEVEIPLDSWNF 114 (125)
T ss_pred EEECCCCCCCcEEEEEEEeCCcccc
Confidence 9999777789999999999999876
No 48
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.75 E-value=1.2e-17 Score=138.53 Aligned_cols=107 Identities=21% Similarity=0.324 Sum_probs=83.8
Q ss_pred ccEEEEEEEEecCCCCCCCC-CCcceEEEEEEcCc---ceEEEEeeCCCCCCeeeeEEEE-EecchhhhcCCcEEEEEEe
Q 019724 3 SRALDITVVSASDLKTAGMF-SKMNVYAVVTIFGE---SQTTSVARDCGVRPTWNHQMRF-NIDEAAAMQNNLTIVYSIR 77 (336)
Q Consensus 3 ~g~L~V~vi~Ak~L~~~d~~-g~~dPYv~v~l~~~---~~kTkv~~~~t~nP~WnE~f~F-~v~~~~~~~~~~~L~v~V~ 77 (336)
..+|+|+|++|++|+..+.. +.+||||+|++... +.||++++ ++.||+|||+|.| .+.... .....|+|+||
T Consensus 15 ~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~-~t~nP~wnE~F~f~~~~~~~--~~~~~L~~~V~ 91 (128)
T cd08388 15 KKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLR-KTRNPVYDETFTFYGIPYNQ--LQDLSLHFAVL 91 (128)
T ss_pred CCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEc-CCCCCceeeEEEEcccCHHH--hCCCEEEEEEE
Confidence 46899999999999988876 88999999998643 37999955 5899999999999 454332 23467999999
Q ss_pred ecCCCCCCcccEEEEEeceeeeccCCCCCCCCeeeee
Q 019724 78 STGGCFGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNI 114 (336)
Q Consensus 78 d~d~~~~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l 114 (336)
|+|+..+|++||++.|+|+++...+.+ +..+|+.+
T Consensus 92 d~d~~~~d~~lG~~~i~L~~l~~~~~~--~~~~~~~~ 126 (128)
T cd08388 92 SFDRYSRDDVIGEVVCPLAGADLLNEG--ELLVSREI 126 (128)
T ss_pred EcCCCCCCceeEEEEEeccccCCCCCc--eEEEEEec
Confidence 997777899999999999998652222 23455554
No 49
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.75 E-value=8.5e-18 Score=135.57 Aligned_cols=106 Identities=19% Similarity=0.357 Sum_probs=86.4
Q ss_pred EEEEEEEecCCCCCCC-CCCcceEEEEEEcCcceEEEEeeCCCCCCee-eeEEEEEecchhhhcCCcEEEEEEeecCCCC
Q 019724 6 LDITVVSASDLKTAGM-FSKMNVYAVVTIFGESQTTSVARDCGVRPTW-NHQMRFNIDEAAAMQNNLTIVYSIRSTGGCF 83 (336)
Q Consensus 6 L~V~vi~Ak~L~~~d~-~g~~dPYv~v~l~~~~~kTkv~~~~t~nP~W-nE~f~F~v~~~~~~~~~~~L~v~V~d~d~~~ 83 (336)
|+|+|++|++|+..+. .+.+||||+|++....+||++++ +++||+| ||+|.|.+....+ .+..|+|+|||++...
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~kT~v~~-~~~nP~W~ne~f~f~i~~~~l--~~~~l~i~V~d~d~~~ 77 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGSTTYKTDVVK-KSLNPVWNSEWFRFEVDDEEL--QDEPLQIRVMDHDTYS 77 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEECCeeEecceec-CCCCCcccCcEEEEEcChHHc--CCCeEEEEEEeCCCCC
Confidence 6899999999998874 67899999999998889999965 5799999 9999999976532 2468999999997666
Q ss_pred CCcccEEEEEeceeeeccCCCCCCCCeeeeee
Q 019724 84 GNSDLGEVFVPVKEMLLRSNGDDDKPMSYNIT 115 (336)
Q Consensus 84 ~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~ 115 (336)
+|++||++.++|.+|..+.... ....||.|.
T Consensus 78 ~~~~iG~~~~~l~~l~~~~~~~-~~~~w~~l~ 108 (110)
T cd08688 78 ANDAIGKVYIDLNPLLLKDSVS-QISGWFPIY 108 (110)
T ss_pred CCCceEEEEEeHHHhcccCCcc-ccCCeEEcc
Confidence 8899999999999998732111 134677775
No 50
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.75 E-value=1.3e-17 Score=137.22 Aligned_cols=106 Identities=13% Similarity=0.253 Sum_probs=87.1
Q ss_pred ccEEEEEEEEecCCCCCCCCCCcceEEEEEEcCc---ceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeec
Q 019724 3 SRALDITVVSASDLKTAGMFSKMNVYAVVTIFGE---SQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRST 79 (336)
Q Consensus 3 ~g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~---~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~ 79 (336)
.++|+|+|++|++|...+..+.+||||+|.+... .+||++++ ++.||+|||+|.|.+....+ ....|.|+|||+
T Consensus 15 ~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~-~t~~P~wne~f~f~v~~~~l--~~~~l~i~V~d~ 91 (124)
T cd08387 15 MGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHK-KTLNPEFDESFVFEVPPQEL--PKRTLEVLLYDF 91 (124)
T ss_pred CCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEc-CCCCCCcccEEEEeCCHHHh--CCCEEEEEEEEC
Confidence 4789999999999999998899999999999532 38999954 58999999999999876532 346899999999
Q ss_pred CCCCCCcccEEEEEeceeeeccCCCCCCCCeeeeee
Q 019724 80 GGCFGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNIT 115 (336)
Q Consensus 80 d~~~~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~ 115 (336)
|...+|++||++.|+|+++... . . ...||.|+
T Consensus 92 ~~~~~~~~iG~~~i~l~~~~~~-~-~--~~~W~~l~ 123 (124)
T cd08387 92 DQFSRDECIGVVELPLAEVDLS-E-K--LDLWRKIQ 123 (124)
T ss_pred CCCCCCceeEEEEEecccccCC-C-C--cceEEECc
Confidence 6666899999999999999862 2 2 34677764
No 51
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.75 E-value=9e-18 Score=137.49 Aligned_cols=93 Identities=18% Similarity=0.286 Sum_probs=78.7
Q ss_pred ccEEEEEEEEecCCCCCCCCCCcceEEEEEEcCc-----ceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEe
Q 019724 3 SRALDITVVSASDLKTAGMFSKMNVYAVVTIFGE-----SQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIR 77 (336)
Q Consensus 3 ~g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~-----~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~ 77 (336)
.++|+|+|++|+||...+ .+.+||||+|+|... ++||+++ +++.||+|||+|.|.+..... ...|.|+||
T Consensus 11 ~~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~~~~~~~kT~v~-~~t~~P~~nE~F~f~v~~~~~---~~~l~v~V~ 85 (119)
T cd08685 11 NRKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVRFRQKTSTV-PDSANPLFHETFSFDVNERDY---QKRLLVTVW 85 (119)
T ss_pred CCEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCCCCcceEeCccc-cCCCCCccccEEEEEcChHHh---CCEEEEEEE
Confidence 578999999999999888 788999999999863 3689985 458999999999999876532 346889999
Q ss_pred ecCCCC-CCcccEEEEEeceeeec
Q 019724 78 STGGCF-GNSDLGEVFVPVKEMLL 100 (336)
Q Consensus 78 d~d~~~-~d~~LG~~~v~L~~l~~ 100 (336)
|+++.. ++++||++.|+|.++..
T Consensus 86 ~~~~~~~~~~~lG~~~i~l~~~~~ 109 (119)
T cd08685 86 NKLSKSRDSGLLGCMSFGVKSIVN 109 (119)
T ss_pred CCCCCcCCCEEEEEEEecHHHhcc
Confidence 996655 47899999999999975
No 52
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.75 E-value=1.7e-17 Score=136.41 Aligned_cols=106 Identities=22% Similarity=0.297 Sum_probs=86.1
Q ss_pred ccEEEEEEEEecCCCCCCCCCCcceEEEEEEcCc---ceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeec
Q 019724 3 SRALDITVVSASDLKTAGMFSKMNVYAVVTIFGE---SQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRST 79 (336)
Q Consensus 3 ~g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~---~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~ 79 (336)
.++|+|+|++|++|...+..+++||||+|.+... .+||+++ +++.||+|||+|.|.+....+ ....|+|+|||+
T Consensus 15 ~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~-~~t~nP~wne~f~f~i~~~~l--~~~~l~~~V~d~ 91 (124)
T cd08385 15 SNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVH-RKTLNPVFNETFTFKVPYSEL--GNKTLVFSVYDF 91 (124)
T ss_pred CCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccC-cCCCCCceeeeEEEeCCHHHh--CCCEEEEEEEeC
Confidence 5789999999999999888889999999998753 3789985 457999999999999875432 246899999999
Q ss_pred CCCCCCcccEEEEEeceeeeccCCCCCCCCeeeeee
Q 019724 80 GGCFGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNIT 115 (336)
Q Consensus 80 d~~~~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~ 115 (336)
|+..+|++||++.|+|+++.. +.. ...|+.|.
T Consensus 92 d~~~~~~~lG~~~i~l~~~~~-~~~---~~~W~~l~ 123 (124)
T cd08385 92 DRFSKHDLIGEVRVPLLTVDL-GHV---TEEWRDLE 123 (124)
T ss_pred CCCCCCceeEEEEEecCcccC-CCC---cceEEEcc
Confidence 776689999999999999865 222 33566653
No 53
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.75 E-value=9.6e-18 Score=138.24 Aligned_cols=95 Identities=18% Similarity=0.191 Sum_probs=81.7
Q ss_pred ccEEEEEEEEecCCCCCCCCCCcceEEEEEEcCc------ceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEE
Q 019724 3 SRALDITVVSASDLKTAGMFSKMNVYAVVTIFGE------SQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSI 76 (336)
Q Consensus 3 ~g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~------~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V 76 (336)
.++|+|+|++|+||...+..+.+||||+++|... ++||++++ ++.||+|||+|.|.|....+ .+..|.|+|
T Consensus 13 ~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~-~t~nPvfnE~F~f~v~~~~L--~~~~L~~~V 89 (124)
T cd08680 13 DSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALE-DQDKPVFNEVFRVPISSTKL--YQKTLQVDV 89 (124)
T ss_pred CCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccC-CCCCCccccEEEEECCHHHh--hcCEEEEEE
Confidence 5789999999999998887788999999998742 38899854 58999999999999976543 468999999
Q ss_pred eecCCCCCCcccEEEEEeceeeec
Q 019724 77 RSTGGCFGNSDLGEVFVPVKEMLL 100 (336)
Q Consensus 77 ~d~d~~~~d~~LG~~~v~L~~l~~ 100 (336)
||+++..++++||++.|.|+++..
T Consensus 90 ~~~~~~~~~~~lG~~~i~L~~~~~ 113 (124)
T cd08680 90 CSVGPDQQEECLGGAQISLADFES 113 (124)
T ss_pred EeCCCCCceeEEEEEEEEhhhccC
Confidence 999777789999999999999854
No 54
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.74 E-value=2.1e-17 Score=135.51 Aligned_cols=103 Identities=18% Similarity=0.276 Sum_probs=86.9
Q ss_pred cEEEEEEEEecCCCCCCCCCCcceEEEEEEcCc-ceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeecCCC
Q 019724 4 RALDITVVSASDLKTAGMFSKMNVYAVVTIFGE-SQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRSTGGC 82 (336)
Q Consensus 4 g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~-~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~d~~ 82 (336)
|+|+|+|++|++|+..+..+++||||+|++... ..+|+++ +++.||+|||+|.|.+... ...|.|+|||++..
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~~~-~~t~~P~Wne~f~~~v~~~-----~~~L~v~v~d~~~~ 74 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTI-SNTLNPVWDEVLYVPVTSP-----NQKITLEVMDYEKV 74 (120)
T ss_pred CeEEEEEEeeECCCCccCCCCcCCEEEEEECCEEeeceeEE-CCCcCCccCceEEEEecCC-----CCEEEEEEEECCCC
Confidence 689999999999999988899999999999764 4888885 5689999999999988654 36899999999766
Q ss_pred CCCcccEEEEEeceeeeccCCCCCCCCeeeeeeCC
Q 019724 83 FGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITTP 117 (336)
Q Consensus 83 ~~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~~ 117 (336)
.+|++||+++++|.+++.. . ...||.+.+.
T Consensus 75 ~~d~~IG~~~~~l~~l~~~--~---~~~~~~~~~~ 104 (120)
T cd04045 75 GKDRSLGSVEINVSDLIKK--N---EDGKYVEYDD 104 (120)
T ss_pred CCCCeeeEEEEeHHHhhCC--C---CCceEEecCC
Confidence 6889999999999999872 1 3467777753
No 55
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.74 E-value=1.6e-17 Score=134.63 Aligned_cols=113 Identities=16% Similarity=0.276 Sum_probs=92.7
Q ss_pred EEEEEEEecCCCCCCCCCCcceEEEEEEcCcc-eEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeecCCCCC
Q 019724 6 LDITVVSASDLKTAGMFSKMNVYAVVTIFGES-QTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRSTGGCFG 84 (336)
Q Consensus 6 L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~~-~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~d~~~~ 84 (336)
|+|+|++|++|...+..+++||||+|.+.+.. ++|+++ +++.||+|||+|.|.+... ....|.|+|||++...+
T Consensus 1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~~~~~T~v~-~~~~~P~Wne~f~~~~~~~----~~~~l~~~v~d~~~~~~ 75 (115)
T cd04040 1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTI-KKTLNPVWNESFEVPVPSR----VRAVLKVEVYDWDRGGK 75 (115)
T ss_pred CEEEEEeeeCCCCCCCCCCCCCeEEEEECCCcceeecee-cCCCCCcccccEEEEeccC----CCCEEEEEEEeCCCCCC
Confidence 68999999999988888899999999997644 799985 5689999999999998654 24789999999966668
Q ss_pred CcccEEEEEeceeeeccCCCCCCCCeeeeeeCCCCCcceEEEE
Q 019724 85 NSDLGEVFVPVKEMLLRSNGDDDKPMSYNITTPGGRAKGVLNV 127 (336)
Q Consensus 85 d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~~~g~~~G~L~l 127 (336)
+++||++.++|.++.. +. . ...|+.|..+.+...|+|.|
T Consensus 76 ~~~iG~~~~~l~~l~~-~~-~--~~~~~~L~~~g~~~~~~~~~ 114 (115)
T cd04040 76 DDLLGSAYIDLSDLEP-EE-T--TELTLPLDGQGGGKLGAVFL 114 (115)
T ss_pred CCceEEEEEEHHHcCC-CC-c--EEEEEECcCCCCccCceEEc
Confidence 9999999999999876 21 1 34677887666777777754
No 56
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.74 E-value=3.4e-17 Score=134.83 Aligned_cols=115 Identities=18% Similarity=0.299 Sum_probs=92.9
Q ss_pred EEEEEEEEecCCCCCC--CCCCcceEEEEEEc------CcceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEE
Q 019724 5 ALDITVVSASDLKTAG--MFSKMNVYAVVTIF------GESQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSI 76 (336)
Q Consensus 5 ~L~V~vi~Ak~L~~~d--~~g~~dPYv~v~l~------~~~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V 76 (336)
.|+|+|++|++|+..+ ..+..||||+|++. ...+||+++.+++.||+|||+|.|.+.... ...|.|+|
T Consensus 3 ~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~----~~~l~~~V 78 (128)
T cd00275 3 TLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPE----LAFLRFVV 78 (128)
T ss_pred EEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCC----eEEEEEEE
Confidence 6999999999999877 57889999999995 344899996665559999999999987442 35799999
Q ss_pred eecCCCCCCcccEEEEEeceeeeccCCCCCCCCeeeeeeCCCC--CcceEEEEEEEE
Q 019724 77 RSTGGCFGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITTPGG--RAKGVLNVSYKF 131 (336)
Q Consensus 77 ~d~d~~~~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~~~g--~~~G~L~lsl~~ 131 (336)
||++.. +|++||++.++|++|.. ...++.|++.++ ...|.|.+++++
T Consensus 79 ~d~~~~-~~~~iG~~~~~l~~l~~-------g~~~~~l~~~~~~~~~~~~l~v~~~~ 127 (128)
T cd00275 79 YDEDSG-DDDFLGQACLPLDSLRQ-------GYRHVPLLDSKGEPLELSTLFVHIDI 127 (128)
T ss_pred EeCCCC-CCcEeEEEEEEhHHhcC-------ceEEEEecCCCCCCCcceeEEEEEEE
Confidence 999655 89999999999999854 234678876555 457889888876
No 57
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.74 E-value=1.3e-17 Score=139.10 Aligned_cols=97 Identities=14% Similarity=0.287 Sum_probs=82.4
Q ss_pred ccEEEEEEEEecCCCCCCCCCCcceEEEEEEcC-------cceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEE
Q 019724 3 SRALDITVVSASDLKTAGMFSKMNVYAVVTIFG-------ESQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYS 75 (336)
Q Consensus 3 ~g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~-------~~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~ 75 (336)
..+|+|+|++|++|...+..+++||||+|++.. ..+||++++ ++.||+|||+|.|.+...........|.|+
T Consensus 15 ~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~-~t~nP~wnE~f~f~i~~~~~~~~~~~l~~~ 93 (133)
T cd04009 15 EQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKK-KTLFPLFDESFEFNVPPEQCSVEGALLLFT 93 (133)
T ss_pred CCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCc-CCCCCccCCEEEEEechhhcccCCCEEEEE
Confidence 468999999999999988889999999999863 348999954 579999999999999764333345789999
Q ss_pred EeecCCCCCCcccEEEEEeceeeec
Q 019724 76 IRSTGGCFGNSDLGEVFVPVKEMLL 100 (336)
Q Consensus 76 V~d~d~~~~d~~LG~~~v~L~~l~~ 100 (336)
|||+++..+|++||++.|+|++|..
T Consensus 94 V~d~d~~~~d~~iG~~~i~l~~l~~ 118 (133)
T cd04009 94 VKDYDLLGSNDFEGEAFLPLNDIPG 118 (133)
T ss_pred EEecCCCCCCcEeEEEEEeHHHCCc
Confidence 9999766679999999999999885
No 58
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.74 E-value=2.3e-17 Score=135.47 Aligned_cols=105 Identities=23% Similarity=0.305 Sum_probs=83.7
Q ss_pred ccEEEEEEEEecCCCCCCCCCCcceEEEEEEcC-----cceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEe
Q 019724 3 SRALDITVVSASDLKTAGMFSKMNVYAVVTIFG-----ESQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIR 77 (336)
Q Consensus 3 ~g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~-----~~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~ 77 (336)
.++|+|+|++|++|...+..+.+||||+|++.. ..+||+++ +++.||+|||+|.|.+.... +.....|.|+||
T Consensus 15 ~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~-~~t~nP~wne~f~f~~~~~~-~l~~~~l~~~V~ 92 (125)
T cd04031 15 TSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTV-KKTLNPEWNQTFEYSNVRRE-TLKERTLEVTVW 92 (125)
T ss_pred CCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCcccccccccc-CCCCCCccccEEEEcccCHH-HhCCCEEEEEEE
Confidence 578999999999999988888999999999975 34789985 45899999999999864421 123478999999
Q ss_pred ecCCCCCCcccEEEEEeceeeeccCCCCCCCCeeeee
Q 019724 78 STGGCFGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNI 114 (336)
Q Consensus 78 d~d~~~~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l 114 (336)
|+++..+|++||++.|+|++... .. ...||.|
T Consensus 93 d~~~~~~~~~iG~~~i~l~~~~~--~~---~~~W~~L 124 (125)
T cd04031 93 DYDRDGENDFLGEVVIDLADALL--DD---EPHWYPL 124 (125)
T ss_pred eCCCCCCCcEeeEEEEecccccc--cC---CcceEEC
Confidence 99766689999999999998433 22 2356665
No 59
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.73 E-value=4.3e-17 Score=134.36 Aligned_cols=105 Identities=16% Similarity=0.272 Sum_probs=85.0
Q ss_pred ccEEEEEEEEecCCCCCCCCCCcceEEEEEEcC-----cceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEe
Q 019724 3 SRALDITVVSASDLKTAGMFSKMNVYAVVTIFG-----ESQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIR 77 (336)
Q Consensus 3 ~g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~-----~~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~ 77 (336)
.++|+|+|++|++|...+..+.+||||+|.+.. ..+||++++ ++.||+|||+|.|.+....+ ....|.|+||
T Consensus 15 ~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~-~~~nP~wne~f~f~i~~~~l--~~~~l~i~v~ 91 (127)
T cd04030 15 RQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKK-DNLNPVFDETFEFPVSLEEL--KRRTLDVAVK 91 (127)
T ss_pred CCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEeccccc-CCCCCEECeEEEEecCHHHh--cCCEEEEEEE
Confidence 478999999999999999889999999999964 348999955 57999999999999876532 3468999999
Q ss_pred ecCCC--CCCcccEEEEEeceeeeccCCCCCCCCeeeee
Q 019724 78 STGGC--FGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNI 114 (336)
Q Consensus 78 d~d~~--~~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l 114 (336)
|++.. .+|++||++.|+|.+|.. .. . ...||.|
T Consensus 92 ~~~~~~~~~~~~iG~~~i~l~~l~~-~~-~--~~~W~~L 126 (127)
T cd04030 92 NSKSFLSREKKLLGQVLIDLSDLDL-SK-G--FTQWYDL 126 (127)
T ss_pred ECCcccCCCCceEEEEEEecccccc-cC-C--ccceEEC
Confidence 99654 478999999999999865 22 1 2356665
No 60
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.73 E-value=2.8e-17 Score=139.89 Aligned_cols=92 Identities=21% Similarity=0.241 Sum_probs=79.3
Q ss_pred EEEEEEEEecCCCCCCCCC--------------CcceEEEEEEcCcceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCc
Q 019724 5 ALDITVVSASDLKTAGMFS--------------KMNVYAVVTIFGESQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNL 70 (336)
Q Consensus 5 ~L~V~vi~Ak~L~~~d~~g--------------~~dPYv~v~l~~~~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~ 70 (336)
+|+|+|++|++|+.++..+ .+||||+|++.+.+.||++++ ++.||+|||+|.|.+..... ..
T Consensus 1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~~kT~v~~-~t~nPvWNE~f~f~v~~p~~---~~ 76 (151)
T cd04018 1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKVKTSVKK-NSYNPEWNEQIVFPEMFPPL---CE 76 (151)
T ss_pred CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEeeecceEc-CCCCCCcceEEEEEeeCCCc---CC
Confidence 4899999999999887443 689999999999999999965 57999999999999754321 36
Q ss_pred EEEEEEeecCCCCCCcccEEEEEeceeeec
Q 019724 71 TIVYSIRSTGGCFGNSDLGEVFVPVKEMLL 100 (336)
Q Consensus 71 ~L~v~V~d~d~~~~d~~LG~~~v~L~~l~~ 100 (336)
.|+|+|||+|...+|++||++.|+|.+|..
T Consensus 77 ~l~~~v~D~d~~~~dd~iG~~~l~l~~l~~ 106 (151)
T cd04018 77 RIKIQIRDWDRVGNDDVIGTHFIDLSKISN 106 (151)
T ss_pred EEEEEEEECCCCCCCCEEEEEEEeHHHhcc
Confidence 899999999777799999999999999887
No 61
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.73 E-value=4.4e-17 Score=133.99 Aligned_cols=107 Identities=15% Similarity=0.267 Sum_probs=84.7
Q ss_pred ccEEEEEEEEecCCCCCCCCCCcceEEEEEEcC---cceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeec
Q 019724 3 SRALDITVVSASDLKTAGMFSKMNVYAVVTIFG---ESQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRST 79 (336)
Q Consensus 3 ~g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~---~~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~ 79 (336)
.++|+|+|++|++|+..+..+++||||+|.+.. ...||++++ ++.||+|||+|.|.+.... ......|+|+|||+
T Consensus 15 ~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~-~t~~P~Wne~f~f~~~~~~-~l~~~~l~~~v~d~ 92 (125)
T cd08386 15 ESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKR-KNLNPHWNETFLFEGFPYE-KLQQRVLYLQVLDY 92 (125)
T ss_pred CCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeec-CCCCCccceeEEEcccCHH-HhCCCEEEEEEEeC
Confidence 568999999999999988889999999999843 348999954 5899999999999853321 12346799999999
Q ss_pred CCCCCCcccEEEEEeceeeeccCCCCCCCCeeeeee
Q 019724 80 GGCFGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNIT 115 (336)
Q Consensus 80 d~~~~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~ 115 (336)
|+..++++||++.|+|+++.. ... ...|+.|.
T Consensus 93 d~~~~~~~iG~~~i~l~~l~~-~~~---~~~W~~l~ 124 (125)
T cd08386 93 DRFSRNDPIGEVSLPLNKVDL-TEE---QTFWKDLK 124 (125)
T ss_pred CCCcCCcEeeEEEEecccccC-CCC---cceEEecC
Confidence 776689999999999999875 221 33566653
No 62
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.72 E-value=5.2e-17 Score=133.02 Aligned_cols=95 Identities=22% Similarity=0.351 Sum_probs=80.5
Q ss_pred ccEEEEEEEEecCCCCCC-CCCCcceEEEEEEcCc-----ceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEE
Q 019724 3 SRALDITVVSASDLKTAG-MFSKMNVYAVVTIFGE-----SQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSI 76 (336)
Q Consensus 3 ~g~L~V~vi~Ak~L~~~d-~~g~~dPYv~v~l~~~-----~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V 76 (336)
.++|+|+|++|++|...+ ..+.+||||+|++... ..||++ ++++.||+|||+|.|.+....+ ....|.|+|
T Consensus 13 ~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v-~~~t~~P~wne~f~f~i~~~~l--~~~~l~i~v 89 (123)
T cd08521 13 TGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSV-KKNTTNPVFNETLKYHISKSQL--ETRTLQLSV 89 (123)
T ss_pred CCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccc-cCCCCCCcccceEEEeCCHHHh--CCCEEEEEE
Confidence 578999999999999888 6789999999998532 378998 4568999999999999876532 346899999
Q ss_pred eecCCCCCCcccEEEEEeceeeec
Q 019724 77 RSTGGCFGNSDLGEVFVPVKEMLL 100 (336)
Q Consensus 77 ~d~d~~~~d~~LG~~~v~L~~l~~ 100 (336)
||++...++++||++.|+|.++..
T Consensus 90 ~d~~~~~~~~~iG~~~i~l~~l~~ 113 (123)
T cd08521 90 WHHDRFGRNTFLGEVEIPLDSWDL 113 (123)
T ss_pred EeCCCCcCCceeeEEEEecccccc
Confidence 999766788999999999999864
No 63
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.72 E-value=3.5e-17 Score=135.34 Aligned_cols=93 Identities=20% Similarity=0.279 Sum_probs=79.1
Q ss_pred ccEEEEEEEEecCCCCCCCCCCcceEEEEEEcCcceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeecCCC
Q 019724 3 SRALDITVVSASDLKTAGMFSKMNVYAVVTIFGESQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRSTGGC 82 (336)
Q Consensus 3 ~g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~d~~ 82 (336)
.++|+|+|++|++|.. +..+++||||+|++.+..+||++++ ++.||+|||+|.|.+.... ....|+|+|||+|..
T Consensus 27 ~~~L~V~V~~A~~L~~-d~~g~~DPYVkV~~~~~~~kT~vi~-~t~nPvWNE~F~f~~~~~~---~~~~L~v~V~D~d~~ 101 (127)
T cd04032 27 LATLTVTVLRATGLWG-DYFTSTDGYVKVFFGGQEKRTEVIW-NNNNPRWNATFDFGSVELS---PGGKLRFEVWDRDNG 101 (127)
T ss_pred cEEEEEEEEECCCCCc-CcCCCCCeEEEEEECCccccCceec-CCCCCcCCCEEEEecccCC---CCCEEEEEEEeCCCC
Confidence 4789999999999984 6678899999999998889999965 5799999999999753321 247899999999776
Q ss_pred CCCcccEEEEEeceeeec
Q 019724 83 FGNSDLGEVFVPVKEMLL 100 (336)
Q Consensus 83 ~~d~~LG~~~v~L~~l~~ 100 (336)
.+|++||++.++|.....
T Consensus 102 s~dd~IG~~~i~l~~~~~ 119 (127)
T cd04032 102 WDDDLLGTCSVVPEAGVH 119 (127)
T ss_pred CCCCeeEEEEEEecCCce
Confidence 699999999999987664
No 64
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.72 E-value=1.4e-16 Score=135.86 Aligned_cols=130 Identities=15% Similarity=0.257 Sum_probs=97.0
Q ss_pred EEEEEEEEecC--CCCCCCCCCcceEEEEEEc-----CcceEEEEeeCCCCCCeeeeEEEEEecchhh----hcCCcEEE
Q 019724 5 ALDITVVSASD--LKTAGMFSKMNVYAVVTIF-----GESQTTSVARDCGVRPTWNHQMRFNIDEAAA----MQNNLTIV 73 (336)
Q Consensus 5 ~L~V~vi~Ak~--L~~~d~~g~~dPYv~v~l~-----~~~~kTkv~~~~t~nP~WnE~f~F~v~~~~~----~~~~~~L~ 73 (336)
.++|+|+.|++ |...+..+.+||||++++. ..+.||+++ ++|+||+|||+|.|.|..... ...+..|+
T Consensus 3 ~~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~-k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~ 81 (155)
T cd08690 3 SIELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTI-KDTNSPEYNESFKLNINRKHRSFQRVFKRHGLK 81 (155)
T ss_pred ceEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcc-cCCCCCcccceEEEEeccccchhhhhccCCcEE
Confidence 35566666666 6666666789999999972 134899995 568999999999999965410 12346799
Q ss_pred EEEeecCCCC-CCcccEEEEEeceeeeccCCCCCCCCeeeeeeCCCCCcceEEEEEEEEcccCCCCC
Q 019724 74 YSIRSTGGCF-GNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITTPGGRAKGVLNVSYKFGPSSSANN 139 (336)
Q Consensus 74 v~V~d~d~~~-~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~~~g~~~G~L~lsl~~~~~~~~~~ 139 (336)
|+|||++..+ +|++||++.|+|..+.... . ...++.|++.+....|+|+|+|++++.....+
T Consensus 82 ~~V~d~~~f~~~D~~iG~~~i~L~~l~~~~--~--~~~~~~L~~~~k~~Gg~l~v~ir~r~p~~~~~ 144 (155)
T cd08690 82 FEVYHKGGFLRSDKLLGTAQVKLEPLETKC--E--IHESVDLMDGRKATGGKLEVKVRLREPLTGKQ 144 (155)
T ss_pred EEEEeCCCcccCCCeeEEEEEEcccccccC--c--ceEEEEhhhCCCCcCCEEEEEEEecCCCccce
Confidence 9999996554 6999999999999987622 1 23578887655677899999999998665443
No 65
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.71 E-value=6e-17 Score=137.07 Aligned_cols=90 Identities=16% Similarity=0.340 Sum_probs=81.1
Q ss_pred cEEEEEEEEecCCCCCCCCCCcceEEEEEEcCcceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeecCCCC
Q 019724 4 RALDITVVSASDLKTAGMFSKMNVYAVVTIFGESQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRSTGGCF 83 (336)
Q Consensus 4 g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~d~~~ 83 (336)
|.|+|+|++|++|...+. +++||||+|+++....||++++ ++.||+|||+|.|.+... ...|+|+|||++...
T Consensus 2 G~L~V~Vi~a~nL~~~d~-~~sDPYV~v~~g~~~~kT~vvk-~t~nP~WnE~f~f~i~~~-----~~~l~~~V~D~d~~~ 74 (145)
T cd04038 2 GLLKVRVVRGTNLAVRDF-TSSDPYVVLTLGNQKVKTRVIK-KNLNPVWNEELTLSVPNP-----MAPLKLEVFDKDTFS 74 (145)
T ss_pred eEEEEEEEeeECCCCCCC-CCcCcEEEEEECCEEEEeeeEc-CCCCCeecccEEEEecCC-----CCEEEEEEEECCCCC
Confidence 789999999999998887 8899999999999889999965 589999999999999764 378999999997666
Q ss_pred CCcccEEEEEeceeeec
Q 019724 84 GNSDLGEVFVPVKEMLL 100 (336)
Q Consensus 84 ~d~~LG~~~v~L~~l~~ 100 (336)
+|++||+++++|.+|+.
T Consensus 75 ~dd~iG~a~i~l~~l~~ 91 (145)
T cd04038 75 KDDSMGEAEIDLEPLVE 91 (145)
T ss_pred CCCEEEEEEEEHHHhhh
Confidence 89999999999999876
No 66
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.71 E-value=5.7e-17 Score=133.66 Aligned_cols=104 Identities=18% Similarity=0.314 Sum_probs=83.9
Q ss_pred ccEEEEEEEEecCCCCCCCCCCcceEEEEEEcCc---ceEEEEeeCCCCCCeeeeEEEEE-ecchhhhcCCcEEEEEEee
Q 019724 3 SRALDITVVSASDLKTAGMFSKMNVYAVVTIFGE---SQTTSVARDCGVRPTWNHQMRFN-IDEAAAMQNNLTIVYSIRS 78 (336)
Q Consensus 3 ~g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~---~~kTkv~~~~t~nP~WnE~f~F~-v~~~~~~~~~~~L~v~V~d 78 (336)
.++|+|+|++|+||...+..+.+|+||++.+... ++||+++ ++ .||+|||+|.|. +.... ..+.+|.|+|||
T Consensus 15 ~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~-~~-~nP~fnE~F~f~~i~~~~--l~~~~L~~~V~~ 90 (124)
T cd08389 15 ARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQ-RG-PNPVFNETFTFSRVEPEE--LNNMALRFRLYG 90 (124)
T ss_pred CCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccc-cC-CCCcccCEEEECCCCHHH--hccCEEEEEEEE
Confidence 4689999999999999888888999999887654 3788884 44 899999999998 65543 346789999999
Q ss_pred cCCCCCCcccEEEEEeceeeeccCCCCCCCCeeeee
Q 019724 79 TGGCFGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNI 114 (336)
Q Consensus 79 ~d~~~~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l 114 (336)
+++..++++||++.|+|+++.. .. ....|+.|
T Consensus 91 ~~~~~~~~~lG~~~i~L~~l~~-~~---~~~~w~~L 122 (124)
T cd08389 91 VERMRKERLIGEKVVPLSQLNL-EG---ETTVWLTL 122 (124)
T ss_pred CCCcccCceEEEEEEeccccCC-CC---CceEEEeC
Confidence 9776689999999999999865 22 13456665
No 67
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.71 E-value=8.6e-17 Score=138.68 Aligned_cols=96 Identities=17% Similarity=0.189 Sum_probs=80.0
Q ss_pred ccEEEEEEEEecCCCCCCCCCCcceEEEEEEcC-----cceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEe
Q 019724 3 SRALDITVVSASDLKTAGMFSKMNVYAVVTIFG-----ESQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIR 77 (336)
Q Consensus 3 ~g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~-----~~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~ 77 (336)
.++|+|+|++|++|...+..+.+||||+|++.. ..+||++++ ++.||+|||+|.|.+.... +.....|+|+||
T Consensus 26 ~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~-~t~nP~WnE~f~f~~~~~~-~l~~~~L~i~V~ 103 (162)
T cd04020 26 TGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVK-KSVNPVWNHTFVYDGVSPE-DLSQACLELTVW 103 (162)
T ss_pred CceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccC-CCCCCCCCCEEEEecCCHH-HhCCCEEEEEEE
Confidence 578999999999999998889999999999853 348999955 5799999999999864321 123468999999
Q ss_pred ecCCCCCCcccEEEEEeceeeec
Q 019724 78 STGGCFGNSDLGEVFVPVKEMLL 100 (336)
Q Consensus 78 d~d~~~~d~~LG~~~v~L~~l~~ 100 (336)
|+|...+|++||++.|.|.++..
T Consensus 104 d~d~~~~d~~lG~v~i~l~~~~~ 126 (162)
T cd04020 104 DHDKLSSNDFLGGVRLGLGTGKS 126 (162)
T ss_pred eCCCCCCCceEEEEEEeCCcccc
Confidence 99776679999999999999875
No 68
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.70 E-value=2e-16 Score=129.61 Aligned_cols=105 Identities=14% Similarity=0.239 Sum_probs=84.4
Q ss_pred ccEEEEEEEEecCCCCCC-CCCCcceEEEEEEcC---cceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEee
Q 019724 3 SRALDITVVSASDLKTAG-MFSKMNVYAVVTIFG---ESQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRS 78 (336)
Q Consensus 3 ~g~L~V~vi~Ak~L~~~d-~~g~~dPYv~v~l~~---~~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d 78 (336)
.++|+|+|++|++|...+ ..+.+||||+|++.. ...||+++ +++.||+|||+|.|++....+ ....|.|+|||
T Consensus 13 ~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~-~~~~~P~wne~f~f~i~~~~l--~~~~l~i~v~d 89 (123)
T cd08390 13 EEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVK-RKTQNPNFDETFVFQVSFKEL--QRRTLRLSVYD 89 (123)
T ss_pred CCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeE-cCCCCCccceEEEEEcCHHHh--cccEEEEEEEE
Confidence 568999999999999887 578899999999853 23788884 568999999999999876532 23689999999
Q ss_pred cCCCCCCcccEEEEEeceeeeccCCCCCCCCeeeee
Q 019724 79 TGGCFGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNI 114 (336)
Q Consensus 79 ~d~~~~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l 114 (336)
++...++++||++.|+|.++.. ... ...|+.|
T Consensus 90 ~~~~~~~~~iG~~~i~L~~l~~--~~~--~~~w~~L 121 (123)
T cd08390 90 VDRFSRHCIIGHVLFPLKDLDL--VKG--GVVWRDL 121 (123)
T ss_pred CCcCCCCcEEEEEEEeccceec--CCC--ceEEEeC
Confidence 9766679999999999999887 222 2356665
No 69
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.70 E-value=9.4e-17 Score=132.34 Aligned_cols=118 Identities=12% Similarity=0.170 Sum_probs=89.3
Q ss_pred EEEEEEEEecCCCCCCCCCCcceEEEEEEcCcc--eEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeecCCC
Q 019724 5 ALDITVVSASDLKTAGMFSKMNVYAVVTIFGES--QTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRSTGGC 82 (336)
Q Consensus 5 ~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~~--~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~d~~ 82 (336)
+|+|+|++|++|...+..+++||||+|++.... .||+++++ +.||+|||+|.|.+.... ...|+|+|||+|..
T Consensus 1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~~kT~~v~~-t~nP~Wne~f~f~~~~~~----~~~L~~~V~d~d~~ 75 (124)
T cd04037 1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPN-TLNPVFGKMFELEATLPG----NSILKISVMDYDLL 75 (124)
T ss_pred CEEEEEEECcCCCCCCCCCCCCcEEEEEECCeeccceeeEEEC-CCCCccceEEEEEecCCC----CCEEEEEEEECCCC
Confidence 489999999999999988999999999998765 57887554 899999999999875432 47899999999776
Q ss_pred CCCcccEEEEEeceeeeccCCCCCCCCeeeeeeCCCCCcceEEEEEEEEcc
Q 019724 83 FGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITTPGGRAKGVLNVSYKFGP 133 (336)
Q Consensus 83 ~~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~~~g~~~G~L~lsl~~~~ 133 (336)
.+|++||++.|+|.+.... ..|.+.- ...+....|.|++...+.+
T Consensus 76 ~~dd~iG~~~i~l~~~~~~-----~~~~~~~-~~~~~~~~~~~~~~~~~~~ 120 (124)
T cd04037 76 GSDDLIGETVIDLEDRFFS-----KHRATCG-LPPTYEESGPNQWRDSLKP 120 (124)
T ss_pred CCCceeEEEEEeecccccc-----hHHHhcc-CCCcccccCceecCcccCc
Confidence 7899999999999987641 1122211 2223335666666655543
No 70
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.70 E-value=1e-16 Score=134.47 Aligned_cols=92 Identities=16% Similarity=0.270 Sum_probs=77.7
Q ss_pred ccEEEEEEEEecCCCCCCC--CCCcceEEEEEEcCcc-----eEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEE
Q 019724 3 SRALDITVVSASDLKTAGM--FSKMNVYAVVTIFGES-----QTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYS 75 (336)
Q Consensus 3 ~g~L~V~vi~Ak~L~~~d~--~g~~dPYv~v~l~~~~-----~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~ 75 (336)
.++|+|+|++|+||...+. .+.+||||+|+|.... +||+++ ++++||+|||+|.|.|.... .++..|.|+
T Consensus 14 ~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~-k~t~nPvfNE~f~F~v~~~~--L~~~~L~~~ 90 (138)
T cd08407 14 ANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRA-KHKINPVWNEMIMFELPSEL--LAASSVELE 90 (138)
T ss_pred CCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceecccee-eCCCCCccccEEEEECCHHH--hCccEEEEE
Confidence 5789999999999998873 3458999999988643 689985 56899999999999998654 345789999
Q ss_pred EeecCCCCCCcccEEEEEecee
Q 019724 76 IRSTGGCFGNSDLGEVFVPVKE 97 (336)
Q Consensus 76 V~d~d~~~~d~~LG~~~v~L~~ 97 (336)
|||+|+..++++||++.|.+..
T Consensus 91 V~d~d~~~~~d~iG~v~lg~~~ 112 (138)
T cd08407 91 VLNQDSPGQSLPLGRCSLGLHT 112 (138)
T ss_pred EEeCCCCcCcceeceEEecCcC
Confidence 9999887789999999999864
No 71
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.70 E-value=8.7e-17 Score=133.80 Aligned_cols=105 Identities=10% Similarity=0.167 Sum_probs=84.4
Q ss_pred ccEEEEEEEEecCCCCCCCCCCcceEEEEEEcCc-----ceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEe
Q 019724 3 SRALDITVVSASDLKTAGMFSKMNVYAVVTIFGE-----SQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIR 77 (336)
Q Consensus 3 ~g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~-----~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~ 77 (336)
.+.|.|+|++|++|...+..+.+||||+|++... .+||++++ ++.||+|||+|.|.+....+ ....|.|+||
T Consensus 12 ~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~-~t~nP~wne~f~f~~~~~~l--~~~~l~~~V~ 88 (133)
T cd08384 12 RRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKK-KTLNPEFNEEFFYDIKHSDL--AKKTLEITVW 88 (133)
T ss_pred CCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEe-ccCCCCcccEEEEECCHHHh--CCCEEEEEEE
Confidence 5789999999999999998899999999999642 37999955 58999999999999876432 3468999999
Q ss_pred ecCCCCCCcccEEEEEeceeeeccCCCCCCCCeeeeeeC
Q 019724 78 STGGCFGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITT 116 (336)
Q Consensus 78 d~d~~~~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~ 116 (336)
|+|...+|++||++.|+|.+. ++ ....|+.+++
T Consensus 89 d~d~~~~~~~lG~~~i~l~~~---~~---~~~~W~~~l~ 121 (133)
T cd08384 89 DKDIGKSNDYIGGLQLGINAK---GE---RLRHWLDCLK 121 (133)
T ss_pred eCCCCCCccEEEEEEEecCCC---Cc---hHHHHHHHHh
Confidence 997666899999999999752 12 1335666654
No 72
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.70 E-value=1.2e-16 Score=133.93 Aligned_cols=92 Identities=17% Similarity=0.266 Sum_probs=78.5
Q ss_pred ccEEEEEEEEecCCCCCCCCCCcceEEEEEEcCc-----ceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEe
Q 019724 3 SRALDITVVSASDLKTAGMFSKMNVYAVVTIFGE-----SQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIR 77 (336)
Q Consensus 3 ~g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~-----~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~ 77 (336)
..+|+|+|++|+||...+..+.+||||+|+|... ++||+|+ ++++||+|||+|.|.|.... ..+..|+|+||
T Consensus 14 ~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~-k~t~nP~~nE~f~F~v~~~~--l~~~~l~~~V~ 90 (136)
T cd08406 14 AERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVK-RDDTNPIFNEAMIFSVPAIV--LQDLSLRVTVA 90 (136)
T ss_pred CCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccc-cCCCCCeeceeEEEECCHHH--hCCcEEEEEEE
Confidence 4689999999999999888889999999999653 3688884 56899999999999997653 34688999999
Q ss_pred ecCCCCCCcccEEEEEecee
Q 019724 78 STGGCFGNSDLGEVFVPVKE 97 (336)
Q Consensus 78 d~d~~~~d~~LG~~~v~L~~ 97 (336)
|+|+..++++||++.|....
T Consensus 91 ~~d~~~~~~~iG~v~lg~~~ 110 (136)
T cd08406 91 ESTEDGKTPNVGHVIIGPAA 110 (136)
T ss_pred eCCCCCCCCeeEEEEECCCC
Confidence 99877789999999997653
No 73
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.69 E-value=2.5e-16 Score=127.76 Aligned_cols=113 Identities=15% Similarity=0.293 Sum_probs=82.8
Q ss_pred EEEEEEEecCCCCCCCCCCcceEEEEEEcCcc-eEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeecCCCCC
Q 019724 6 LDITVVSASDLKTAGMFSKMNVYAVVTIFGES-QTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRSTGGCFG 84 (336)
Q Consensus 6 L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~~-~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~d~~~~ 84 (336)
|+|+|++|++|+.. +.+||||+|++.... +||++++ + .||+|||+|.|.+.... .....|.|.|||++....
T Consensus 2 L~v~vi~a~~l~~~---~~~dpyv~v~~~~~~~~kT~~~~-~-~~P~Wne~f~f~v~~~~--~~~~~l~i~v~d~~~~~~ 74 (117)
T cd08383 2 LRLRILEAKNLPSK---GTRDPYCTVSLDQVEVARTKTVE-K-LNPFWGEEFVFDDPPPD--VTFFTLSFYNKDKRSKDR 74 (117)
T ss_pred eEEEEEEecCCCcC---CCCCceEEEEECCEEeEecceEE-C-CCCcccceEEEecCCcc--ccEEEEEEEEEecccCCC
Confidence 88999999999876 789999999998754 7999854 4 89999999999997642 123678899999854435
Q ss_pred CcccEEEEEeceeeeccCCCCCCCCeeeeeeCC--CCCcceEEEEEEEE
Q 019724 85 NSDLGEVFVPVKEMLLRSNGDDDKPMSYNITTP--GGRAKGVLNVSYKF 131 (336)
Q Consensus 85 d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~~--~g~~~G~L~lsl~~ 131 (336)
+.++|++.| .++.. +.. ...||.|... .....|+|+|+++|
T Consensus 75 ~~~~g~v~l--~~~~~-~~~---~~~w~~L~~~~~~~~~~G~l~l~~~~ 117 (117)
T cd08383 75 DIVIGKVAL--SKLDL-GQG---KDEWFPLTPVDPDSEVQGSVRLRARY 117 (117)
T ss_pred eeEEEEEEe--cCcCC-CCc---ceeEEECccCCCCCCcCceEEEEEEC
Confidence 556666554 44433 121 3367777643 34568999999986
No 74
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.69 E-value=1.1e-16 Score=133.93 Aligned_cols=109 Identities=17% Similarity=0.326 Sum_probs=85.7
Q ss_pred ccEEEEEEEEecCCCCCCCCCCcceEEEEEEcCc-----ceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEe
Q 019724 3 SRALDITVVSASDLKTAGMFSKMNVYAVVTIFGE-----SQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIR 77 (336)
Q Consensus 3 ~g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~-----~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~ 77 (336)
.++|+|+|++|++|...+..+++||||+|.+... +.||+++ +++.||+|||+|.|.+....+ ....|+|+||
T Consensus 14 ~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~-k~t~nP~w~e~F~f~v~~~~~--~~~~l~~~v~ 90 (136)
T cd08404 14 TNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVK-KCTLNPVFNESFVFDIPSEEL--EDISVEFLVL 90 (136)
T ss_pred CCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccc-cCCCCCccCceEEEECCHHHh--CCCEEEEEEE
Confidence 5689999999999999998899999999998642 2678884 568999999999999875432 4568999999
Q ss_pred ecCCCCCCcccEEEEEeceeeeccCCCCCCCCeeeeeeCCCCC
Q 019724 78 STGGCFGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITTPGGR 120 (336)
Q Consensus 78 d~d~~~~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~~~g~ 120 (336)
|+|+..++++||++.|.+.+ .. .. ...|+.+.+..++
T Consensus 91 d~d~~~~~~~iG~~~~~~~~-~~--~~---~~~w~~l~~~~~~ 127 (136)
T cd08404 91 DSDRVTKNEVIGRLVLGPKA-SG--SG---GHHWKEVCNPPRR 127 (136)
T ss_pred ECCCCCCCccEEEEEECCcC-CC--ch---HHHHHHHHhCCCC
Confidence 99777789999999999987 22 21 3356666543333
No 75
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.67 E-value=3.7e-16 Score=131.25 Aligned_cols=92 Identities=15% Similarity=0.271 Sum_probs=79.1
Q ss_pred ccEEEEEEEEecCCCCCCCCCCcceEEEEEEcCc------ceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEE
Q 019724 3 SRALDITVVSASDLKTAGMFSKMNVYAVVTIFGE------SQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSI 76 (336)
Q Consensus 3 ~g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~------~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V 76 (336)
.++|.|+|++|+||...+..+.+||||+|++... ++||+++ +++.||+|||+|.|.|.... ..+..|.|+|
T Consensus 14 ~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~-~~t~nPvfnEtF~f~i~~~~--l~~~~L~~~V 90 (138)
T cd08408 14 TGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIR-RGQPDPEFKETFVFQVALFQ--LSEVTLMFSV 90 (138)
T ss_pred CCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceee-cCCCCCcEeeeEEEECCHHH--hCccEEEEEE
Confidence 5789999999999999888889999999999642 2689985 56899999999999997653 3457899999
Q ss_pred eecCCCCCCcccEEEEEecee
Q 019724 77 RSTGGCFGNSDLGEVFVPVKE 97 (336)
Q Consensus 77 ~d~d~~~~d~~LG~~~v~L~~ 97 (336)
||.++..++++||++.|.+..
T Consensus 91 ~~~~~~~~~~~iG~v~l~~~~ 111 (138)
T cd08408 91 YNKRKMKRKEMIGWFSLGLNS 111 (138)
T ss_pred EECCCCCCCcEEEEEEECCcC
Confidence 999777789999999998864
No 76
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.67 E-value=3.4e-16 Score=131.29 Aligned_cols=106 Identities=18% Similarity=0.272 Sum_probs=84.9
Q ss_pred EEEEEEEecCCCCCCCCCCcceEEEEEEc----CcceEEEEeeCCCCCCeeeeEEEEEecchhh-----------hcCCc
Q 019724 6 LDITVVSASDLKTAGMFSKMNVYAVVTIF----GESQTTSVARDCGVRPTWNHQMRFNIDEAAA-----------MQNNL 70 (336)
Q Consensus 6 L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~----~~~~kTkv~~~~t~nP~WnE~f~F~v~~~~~-----------~~~~~ 70 (336)
|+|+|++|++|... ..+++||||+|++. ...+||++++ ++.||+|||+|.|.+..... +....
T Consensus 1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~~~~~~~rT~vv~-~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~ 78 (137)
T cd08675 1 LSVRVLECRDLALK-SNGTCDPFARVTLNYSSKTDTKRTKVKK-KTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKS 78 (137)
T ss_pred CEEEEEEccCCCcc-cCCCCCcEEEEEEecCCcCCeeccceee-CCCCCCcceEEEEEcccccccccccccccccccccc
Confidence 68999999999988 77899999999998 5559999965 48999999999999876421 11356
Q ss_pred EEEEEEeecCCCCCCcccEEEEEeceeeeccCCCCCCCCeeeeeeCC
Q 019724 71 TIVYSIRSTGGCFGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITTP 117 (336)
Q Consensus 71 ~L~v~V~d~d~~~~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~~ 117 (336)
.|+|+|||++...+++|||++.|+|.++.. .+. ...||.|..+
T Consensus 79 ~l~i~V~d~~~~~~~~~IG~~~i~l~~l~~--~~~--~~~W~~L~~~ 121 (137)
T cd08675 79 ELRVELWHASMVSGDDFLGEVRIPLQGLQQ--AGS--HQAWYFLQPR 121 (137)
T ss_pred EEEEEEEcCCcCcCCcEEEEEEEehhhccC--CCc--ccceEecCCc
Confidence 899999999666589999999999999885 222 2357777653
No 77
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.67 E-value=4.4e-16 Score=125.80 Aligned_cols=103 Identities=16% Similarity=0.300 Sum_probs=82.1
Q ss_pred CCCCCcceEEEEEEcCcc-eEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeecCCCCCCcccEEEEEeceee
Q 019724 20 GMFSKMNVYAVVTIFGES-QTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRSTGGCFGNSDLGEVFVPVKEM 98 (336)
Q Consensus 20 d~~g~~dPYv~v~l~~~~-~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~d~~~~d~~LG~~~v~L~~l 98 (336)
.++|++||||+|.+++.. .||++++ ++.||+|||+|.|.+.+.. ...|.|+|||++.. +|++||++.|+|+++
T Consensus 8 ~~~G~~dPYv~v~v~~~~~~kT~v~~-~t~nP~Wne~f~f~v~~~~----~~~l~i~v~d~~~~-~d~~iG~~~v~L~~l 81 (111)
T cd04052 8 SKTGLLSPYAELYLNGKLVYTTRVKK-KTNNPSWNASTEFLVTDRR----KSRVTVVVKDDRDR-HDPVLGSVSISLNDL 81 (111)
T ss_pred ccCCCCCceEEEEECCEEEEEEeeec-cCCCCccCCceEEEecCcC----CCEEEEEEEECCCC-CCCeEEEEEecHHHH
Confidence 356889999999998754 7889854 5899999999999986542 47799999999655 899999999999999
Q ss_pred eccCCCCCCCCeeeeeeCCCCCcceEEEEEEEEccc
Q 019724 99 LLRSNGDDDKPMSYNITTPGGRAKGVLNVSYKFGPS 134 (336)
Q Consensus 99 ~~~~~~~~~~~~~~~l~~~~g~~~G~L~lsl~~~~~ 134 (336)
+.... . ...||.|.. ...|+|+|++.|.+.
T Consensus 82 ~~~~~-~--~~~w~~L~~---~~~G~i~~~~~~~p~ 111 (111)
T cd04052 82 IDATS-V--GQQWFPLSG---NGQGRIRISALWKPV 111 (111)
T ss_pred Hhhhh-c--cceeEECCC---CCCCEEEEEEEEecC
Confidence 76222 1 236777753 468999999999763
No 78
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.66 E-value=1.1e-15 Score=128.99 Aligned_cols=117 Identities=14% Similarity=0.192 Sum_probs=92.0
Q ss_pred cEEEEEEEEecCCCCCCCCCCcceEEEEEEcCcc-eEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeecCCC
Q 019724 4 RALDITVVSASDLKTAGMFSKMNVYAVVTIFGES-QTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRSTGGC 82 (336)
Q Consensus 4 g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~~-~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~d~~ 82 (336)
..|.|.|++||+|+.++ ++||+|.|+... .||+++ .++.||.|+|.|.|...... ..|+|.||+.++.
T Consensus 11 ~sL~v~V~EAk~Lp~~~-----~~Y~~i~Ld~~~vaRT~v~-~~~~nP~W~E~F~f~~~~~~-----~~l~v~v~k~~~~ 79 (146)
T cd04013 11 NSLKLWIIEAKGLPPKK-----RYYCELCLDKTLYARTTSK-LKTDTLFWGEHFEFSNLPPV-----SVITVNLYRESDK 79 (146)
T ss_pred EEEEEEEEEccCCCCcC-----CceEEEEECCEEEEEEEEE-cCCCCCcceeeEEecCCCcc-----cEEEEEEEEccCc
Confidence 47899999999998654 899999999988 599995 55789999999999764432 6799999876444
Q ss_pred C----CCcccEEEEEeceeeeccCCCCCCCCeeeeeeCCCCC----------cceEEEEEEEEcccC
Q 019724 83 F----GNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITTPGGR----------AKGVLNVSYKFGPSS 135 (336)
Q Consensus 83 ~----~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~~~g~----------~~G~L~lsl~~~~~~ 135 (336)
. ++++||++.|++.+|.. +.. ...||.|...++. ..++|+|+++|....
T Consensus 80 ~~~~~~~~~IG~V~Ip~~~l~~-~~~---ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~~~ 142 (146)
T cd04013 80 KKKKDKSQLIGTVNIPVTDVSS-RQF---VEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQSTR 142 (146)
T ss_pred cccccCCcEEEEEEEEHHHhcC-CCc---ccEEEEeecCCCCCccccccccCCCCEEEEEEEEEEee
Confidence 3 57899999999999885 222 3468888764433 347999999998754
No 79
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.66 E-value=5.3e-16 Score=132.28 Aligned_cols=90 Identities=23% Similarity=0.382 Sum_probs=77.1
Q ss_pred CccEEEEEEEEecCCCCCCCCCCcceEEEEEEcCc-----------------------------ceEEEEeeCCCCCCee
Q 019724 2 GSRALDITVVSASDLKTAGMFSKMNVYAVVTIFGE-----------------------------SQTTSVARDCGVRPTW 52 (336)
Q Consensus 2 ~~g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~-----------------------------~~kTkv~~~~t~nP~W 52 (336)
...+|+|+|++|++|...+.++++||||+|.+... ..+|+++ ++++||+|
T Consensus 26 ~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~-~~tlnP~W 104 (153)
T cd08676 26 PIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVK-PQTLNPVW 104 (153)
T ss_pred CeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEeccee-cCCCCCcc
Confidence 35689999999999999999999999999998632 2688884 56899999
Q ss_pred eeEEEEEecchhhhcCCcEEEEEEeecCCCCCCcccEEEEEeceeeec
Q 019724 53 NHQMRFNIDEAAAMQNNLTIVYSIRSTGGCFGNSDLGEVFVPVKEMLL 100 (336)
Q Consensus 53 nE~f~F~v~~~~~~~~~~~L~v~V~d~d~~~~d~~LG~~~v~L~~l~~ 100 (336)
||+|.|.+.... ...|+|+|||++ |++||+++|+|++|..
T Consensus 105 nE~F~f~v~~~~----~~~L~i~V~D~d----d~~IG~v~i~l~~l~~ 144 (153)
T cd08676 105 NETFRFEVEDVS----NDQLHLDIWDHD----DDFLGCVNIPLKDLPS 144 (153)
T ss_pred ccEEEEEeccCC----CCEEEEEEEecC----CCeEEEEEEEHHHhCC
Confidence 999999996542 478999999994 8999999999999884
No 80
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.66 E-value=4.6e-16 Score=130.04 Aligned_cols=92 Identities=13% Similarity=0.297 Sum_probs=77.6
Q ss_pred ccEEEEEEEEecCCCCCCCCCCcceEEEEEEcC-----cceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEe
Q 019724 3 SRALDITVVSASDLKTAGMFSKMNVYAVVTIFG-----ESQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIR 77 (336)
Q Consensus 3 ~g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~-----~~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~ 77 (336)
.++|+|+|++|++|...+..+++||||+|++.. ..++|++ ++++.||+|||+|.|.+....+ ....|.|+||
T Consensus 14 ~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v-~~~t~nP~wne~f~f~i~~~~l--~~~~l~~~v~ 90 (136)
T cd08402 14 AGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTI-KKRTLNPYYNESFSFEVPFEQI--QKVHLIVTVL 90 (136)
T ss_pred CCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccc-eeCCCCCcccceEEEECCHHHh--CCCEEEEEEE
Confidence 578999999999999998889999999999863 2367887 4568999999999999865432 2358999999
Q ss_pred ecCCCCCCcccEEEEEecee
Q 019724 78 STGGCFGNSDLGEVFVPVKE 97 (336)
Q Consensus 78 d~d~~~~d~~LG~~~v~L~~ 97 (336)
|+++..+|++||++.|++..
T Consensus 91 d~~~~~~~~~iG~~~i~~~~ 110 (136)
T cd08402 91 DYDRIGKNDPIGKVVLGCNA 110 (136)
T ss_pred eCCCCCCCceeEEEEECCcc
Confidence 99776789999999999975
No 81
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.66 E-value=6.2e-16 Score=128.33 Aligned_cols=105 Identities=16% Similarity=0.245 Sum_probs=86.9
Q ss_pred ccEEEEEEEEecCCCCCCCCCCcceEEEEEEcC-----cceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEe
Q 019724 3 SRALDITVVSASDLKTAGMFSKMNVYAVVTIFG-----ESQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIR 77 (336)
Q Consensus 3 ~g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~-----~~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~ 77 (336)
.++|+|+|++|++|...+..+.+||||+|.+.. ..+||++++ ++.||+|||+|.|.+.... ....|.|+||
T Consensus 12 ~~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~-~~~~P~wne~f~~~~~~~~---~~~~l~v~v~ 87 (131)
T cd04026 12 DNKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIK-KTLNPVWNETFTFDLKPAD---KDRRLSIEVW 87 (131)
T ss_pred CCEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeec-CCCCCCccceEEEeCCchh---cCCEEEEEEE
Confidence 468999999999999888788999999999974 348999954 5799999999999986542 2468999999
Q ss_pred ecCCCCCCcccEEEEEeceeeeccCCCCCCCCeeeeeeC
Q 019724 78 STGGCFGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITT 116 (336)
Q Consensus 78 d~d~~~~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~ 116 (336)
|++...++++||+++++|+++... ....||.|.+
T Consensus 88 d~~~~~~~~~iG~~~~~l~~l~~~-----~~~~w~~L~~ 121 (131)
T cd04026 88 DWDRTTRNDFMGSLSFGVSELIKM-----PVDGWYKLLN 121 (131)
T ss_pred ECCCCCCcceeEEEEEeHHHhCcC-----ccCceEECcC
Confidence 996666899999999999999862 1346788875
No 82
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.66 E-value=6.1e-16 Score=129.34 Aligned_cols=90 Identities=14% Similarity=0.320 Sum_probs=75.5
Q ss_pred ccEEEEEEEEecCCCCCCCCCCcceEEEEEEcCc-----ceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEe
Q 019724 3 SRALDITVVSASDLKTAGMFSKMNVYAVVTIFGE-----SQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIR 77 (336)
Q Consensus 3 ~g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~-----~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~ 77 (336)
.+.|+|+|++|++|...+..+++||||+|++... .+||++ ++++.||+|||+|.|.+....+ ....|.|+||
T Consensus 13 ~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v-~~~t~nP~wnE~F~f~i~~~~l--~~~~l~~~V~ 89 (135)
T cd08410 13 AGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSC-MRGTIDPFYNESFSFKVPQEEL--ENVSLVFTVY 89 (135)
T ss_pred CCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCcc-ccCCCCCccceeEEEeCCHHHh--CCCEEEEEEE
Confidence 5789999999999999998899999999998432 278888 4568999999999999965432 2357999999
Q ss_pred ecCCCCCCcccEEEEEec
Q 019724 78 STGGCFGNSDLGEVFVPV 95 (336)
Q Consensus 78 d~d~~~~d~~LG~~~v~L 95 (336)
|+|...+|++||++.|..
T Consensus 90 d~d~~~~~~~iG~~~l~~ 107 (135)
T cd08410 90 GHNVKSSNDFIGRIVIGQ 107 (135)
T ss_pred eCCCCCCCcEEEEEEEcC
Confidence 997777899999998665
No 83
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=99.66 E-value=4e-17 Score=154.94 Aligned_cols=106 Identities=14% Similarity=0.240 Sum_probs=90.4
Q ss_pred CccEEEEEEEEecCCCCCCCCCCcceEEEEEEcCcc-----eEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEE
Q 019724 2 GSRALDITVVSASDLKTAGMFSKMNVYAVVTIFGES-----QTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSI 76 (336)
Q Consensus 2 ~~g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~~-----~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V 76 (336)
+...|+|+|.+|+||..+|.++.+||||++.|..+. +||++++ +++||+|||+|+|.+...+ +++.|.|||
T Consensus 178 ~~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik-~~LNP~wNEtftf~Lkp~D---kdrRlsiEv 253 (683)
T KOG0696|consen 178 KRDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIK-ATLNPVWNETFTFKLKPSD---KDRRLSIEV 253 (683)
T ss_pred cCceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhh-hhcCccccceeEEeccccc---ccceeEEEE
Confidence 345799999999999999999999999999997643 8999965 5899999999999997754 568899999
Q ss_pred eecCCCCCCcccEEEEEeceeeeccCCCCCCCCeeeeeeC
Q 019724 77 RSTGGCFGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITT 116 (336)
Q Consensus 77 ~d~d~~~~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~ 116 (336)
||||+.+++||+|+..+.+++|.. +.. .-||.|.+
T Consensus 254 WDWDrTsRNDFMGslSFgisEl~K--~p~---~GWyKlLs 288 (683)
T KOG0696|consen 254 WDWDRTSRNDFMGSLSFGISELQK--APV---DGWYKLLS 288 (683)
T ss_pred ecccccccccccceecccHHHHhh--cch---hhHHHHhh
Confidence 999999999999999999999987 322 24666654
No 84
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.66 E-value=1e-15 Score=125.16 Aligned_cols=99 Identities=15% Similarity=0.214 Sum_probs=80.1
Q ss_pred EEEEEecCCCCCCCCCCcceEEEEEEcCcc-------eEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeecC
Q 019724 8 ITVVSASDLKTAGMFSKMNVYAVVTIFGES-------QTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRSTG 80 (336)
Q Consensus 8 V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~~-------~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~d 80 (336)
...++|++|...+..+++||||+|++.... +||++++ ++.||+|||+|.|.+.... ...|+|+|||+|
T Consensus 4 ~~~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~-~t~nP~wne~f~f~~~~~~----~~~l~~~V~d~d 78 (120)
T cd04048 4 ELSISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIK-NNLNPDFVTTFTVDYYFEE----VQKLRFEVYDVD 78 (120)
T ss_pred EEEEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeC-CCCCCCceEEEEEEEEeEe----eeEEEEEEEEec
Confidence 356899999999989999999999998764 8999965 5799999999999865432 368999999996
Q ss_pred C----CCCCcccEEEEEeceeeeccCCCCCCCCeeeeee
Q 019724 81 G----CFGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNIT 115 (336)
Q Consensus 81 ~----~~~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~ 115 (336)
. ..+|++||+++++|.+|+. ... ...++.|.
T Consensus 79 ~~~~~~~~~d~iG~~~i~l~~l~~-~~~---~~~~~~l~ 113 (120)
T cd04048 79 SKSKDLSDHDFLGEAECTLGEIVS-SPG---QKLTLPLK 113 (120)
T ss_pred CCcCCCCCCcEEEEEEEEHHHHhc-CCC---cEEEEEcc
Confidence 5 5589999999999999986 221 33566664
No 85
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.66 E-value=5.3e-16 Score=129.66 Aligned_cols=93 Identities=17% Similarity=0.314 Sum_probs=78.1
Q ss_pred ccEEEEEEEEecCCCCCCCCCCcceEEEEEEcC-----cceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEe
Q 019724 3 SRALDITVVSASDLKTAGMFSKMNVYAVVTIFG-----ESQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIR 77 (336)
Q Consensus 3 ~g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~-----~~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~ 77 (336)
.++|+|+|++|++|...+..+++||||+|++.. ...||++++ ++.||+|||+|.|.+....+ ....|.|+||
T Consensus 14 ~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~-~t~~P~wne~F~f~i~~~~~--~~~~l~~~v~ 90 (136)
T cd08405 14 ANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKK-RTLNPVFNESFIFNIPLERL--RETTLIITVM 90 (136)
T ss_pred CCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCccee-CCCCCcccceEEEeCCHHHh--CCCEEEEEEE
Confidence 478999999999999988889999999999843 137899854 58999999999999865432 2468999999
Q ss_pred ecCCCCCCcccEEEEEeceee
Q 019724 78 STGGCFGNSDLGEVFVPVKEM 98 (336)
Q Consensus 78 d~d~~~~d~~LG~~~v~L~~l 98 (336)
|+++..+|++||++.|++.+.
T Consensus 91 d~~~~~~~~~lG~~~i~~~~~ 111 (136)
T cd08405 91 DKDRLSRNDLIGKIYLGWKSG 111 (136)
T ss_pred ECCCCCCCcEeEEEEECCccC
Confidence 997766899999999999875
No 86
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.66 E-value=6.1e-16 Score=129.00 Aligned_cols=92 Identities=21% Similarity=0.342 Sum_probs=77.5
Q ss_pred CccEEEEEEEEecCCCCCCCCCCcceEEEEEEcCc-----ceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEE
Q 019724 2 GSRALDITVVSASDLKTAGMFSKMNVYAVVTIFGE-----SQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSI 76 (336)
Q Consensus 2 ~~g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~-----~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V 76 (336)
..++|+|+|++|++|...+..+++||||+|++... ..||++ ++++.||+|||+|.|.+..... ....|.|+|
T Consensus 12 ~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v-~~~t~nP~wne~f~f~i~~~~~--~~~~l~~~v 88 (134)
T cd08403 12 TAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSV-KKNTLNPTYNEALVFDVPPENV--DNVSLIIAV 88 (134)
T ss_pred CCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCc-ccCCCCCcccceEEEECCHHHh--CCCEEEEEE
Confidence 36799999999999999998999999999998532 368887 4568999999999999865432 235799999
Q ss_pred eecCCCCCCcccEEEEEece
Q 019724 77 RSTGGCFGNSDLGEVFVPVK 96 (336)
Q Consensus 77 ~d~d~~~~d~~LG~~~v~L~ 96 (336)
||++...+|++||++.|++.
T Consensus 89 ~d~~~~~~~~~IG~~~l~~~ 108 (134)
T cd08403 89 VDYDRVGHNELIGVCRVGPN 108 (134)
T ss_pred EECCCCCCCceeEEEEECCC
Confidence 99977678999999999876
No 87
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.66 E-value=6.8e-16 Score=128.34 Aligned_cols=93 Identities=13% Similarity=0.335 Sum_probs=76.3
Q ss_pred ccEEEEEEEEecCCCCCCCCCCcceEEEEEEcCc-----ceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEe
Q 019724 3 SRALDITVVSASDLKTAGMFSKMNVYAVVTIFGE-----SQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIR 77 (336)
Q Consensus 3 ~g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~-----~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~ 77 (336)
.++|+|+|++|+||+..+.....||||+|+|... ++||++++++..||+|||+|.|+|.... .+..|.|+||
T Consensus 13 ~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~---~~v~l~v~v~ 89 (135)
T cd08692 13 NSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQE---HGIQFLIKLY 89 (135)
T ss_pred CCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchh---heeEEEEEEE
Confidence 5789999999999998755566799999998753 2888885543257999999999998653 2478999999
Q ss_pred ecCCCCCCcccEEEEEeceee
Q 019724 78 STGGCFGNSDLGEVFVPVKEM 98 (336)
Q Consensus 78 d~d~~~~d~~LG~~~v~L~~l 98 (336)
|+|+..++++||++.|.+++.
T Consensus 90 d~~~~~~n~~IG~v~lG~~~~ 110 (135)
T cd08692 90 SRSSVRRKHFLGQVWISSDSS 110 (135)
T ss_pred eCCCCcCCceEEEEEECCccC
Confidence 997777999999999998764
No 88
>PLN03008 Phospholipase D delta
Probab=99.65 E-value=8.2e-16 Score=158.06 Aligned_cols=126 Identities=18% Similarity=0.357 Sum_probs=100.0
Q ss_pred CccEEEEEEEEecCCCCCCC------------------------------------------CCCcceEEEEEEcCcc-e
Q 019724 2 GSRALDITVVSASDLKTAGM------------------------------------------FSKMNVYAVVTIFGES-Q 38 (336)
Q Consensus 2 ~~g~L~V~vi~Ak~L~~~d~------------------------------------------~g~~dPYv~v~l~~~~-~ 38 (336)
-+|+|.|+|++|++|+.+|+ .+++||||+|.|...+ .
T Consensus 12 lhg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~I~Lg~~rv~ 91 (868)
T PLN03008 12 LHGDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVTVVVPQATLA 91 (868)
T ss_pred eecccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEEEEECCccee
Confidence 37899999999999875221 2367999999998765 6
Q ss_pred EEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeecCCCCCCcccEEEEEeceeeeccCCCCCCCCeeeeeeCCC
Q 019724 39 TTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRSTGGCFGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITTPG 118 (336)
Q Consensus 39 kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~d~~~~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~~~ 118 (336)
||+|+ +++.||+|||+|.|.+.... ..|+|+|||+ +.+++++||++.|+|++|.. ++. ...|+.|.+.+
T Consensus 92 RTrVi-~n~~NPvWNE~F~f~vah~~-----s~L~f~VkD~-D~~gaD~IG~a~IPL~~L~~-Ge~---vd~Wl~Ll~~~ 160 (868)
T PLN03008 92 RTRVL-KNSQEPLWDEKFNISIAHPF-----AYLEFQVKDD-DVFGAQIIGTAKIPVRDIAS-GER---ISGWFPVLGAS 160 (868)
T ss_pred eEEeC-CCCCCCCcceeEEEEecCCC-----ceEEEEEEcC-CccCCceeEEEEEEHHHcCC-CCc---eEEEEEccccC
Confidence 99995 56799999999999997643 6899999998 55578999999999999886 322 34688887744
Q ss_pred CC---cceEEEEEEEEcccCCCC
Q 019724 119 GR---AKGVLNVSYKFGPSSSAN 138 (336)
Q Consensus 119 g~---~~G~L~lsl~~~~~~~~~ 138 (336)
++ ..++|+|+|+|.+..+..
T Consensus 161 ~kp~k~~~kl~v~lqf~pv~~~~ 183 (868)
T PLN03008 161 GKPPKAETAIFIDMKFTPFDQIH 183 (868)
T ss_pred CCCCCCCcEEEEEEEEEEccccc
Confidence 33 357999999999877643
No 89
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.64 E-value=1.9e-15 Score=124.04 Aligned_cols=95 Identities=19% Similarity=0.235 Sum_probs=78.4
Q ss_pred ccEEEEEEEEecCCCCCCCCCCcceEEEEEEcC-----cceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEe
Q 019724 3 SRALDITVVSASDLKTAGMFSKMNVYAVVTIFG-----ESQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIR 77 (336)
Q Consensus 3 ~g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~-----~~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~ 77 (336)
.++|+|+|++|++|...+..+++||||+|.+.. ...||++++ ++.||+|||+|.|...... +..+..|.|+||
T Consensus 14 ~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~-~~~~P~Wne~f~f~~~~~~-~~~~~~l~~~v~ 91 (123)
T cd04035 14 NSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVH-KTRNPEFNETLTYYGITEE-DIQRKTLRLLVL 91 (123)
T ss_pred CCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeec-CCCCCCccceEEEcCCCHH-HhCCCEEEEEEE
Confidence 568999999999999888888999999999853 238999965 5799999999999633221 223468999999
Q ss_pred ecCCCCCCcccEEEEEeceeeec
Q 019724 78 STGGCFGNSDLGEVFVPVKEMLL 100 (336)
Q Consensus 78 d~d~~~~d~~LG~~~v~L~~l~~ 100 (336)
|++.. ++++||++.|+|++|..
T Consensus 92 d~~~~-~~~~iG~~~i~l~~l~~ 113 (123)
T cd04035 92 DEDRF-GNDFLGETRIPLKKLKP 113 (123)
T ss_pred EcCCc-CCeeEEEEEEEcccCCC
Confidence 99666 89999999999999986
No 90
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.64 E-value=1.2e-15 Score=127.88 Aligned_cols=93 Identities=20% Similarity=0.340 Sum_probs=78.2
Q ss_pred ccEEEEEEEEecCCCCCCCCCCcceEEEEEEcCc-----ceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEe
Q 019724 3 SRALDITVVSASDLKTAGMFSKMNVYAVVTIFGE-----SQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIR 77 (336)
Q Consensus 3 ~g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~-----~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~ 77 (336)
.++|+|+|++|+||...+ .+.+|+||+|++... ++||++ ++++.||+|||+|.|.|....+ ....|.|+||
T Consensus 14 ~~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~~~~~kT~v-~~~~~nP~fnE~F~f~i~~~~l--~~~~L~~~V~ 89 (137)
T cd08409 14 LNRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEV-VDGAASPSFNESFSFKVTSRQL--DTASLSLSVM 89 (137)
T ss_pred CCeEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEEeeeeeccc-EeCCCCCcccceEEEECCHHHh--CccEEEEEEE
Confidence 468999999999999888 788999999998753 378888 4568999999999999976543 3478999999
Q ss_pred ecCCCCCCcccEEEEEeceeee
Q 019724 78 STGGCFGNSDLGEVFVPVKEML 99 (336)
Q Consensus 78 d~d~~~~d~~LG~~~v~L~~l~ 99 (336)
|++...++++||++.|....+.
T Consensus 90 ~~~~~~~~~~lG~v~ig~~~~~ 111 (137)
T cd08409 90 QSGGVRKSKLLGRVVLGPFMYA 111 (137)
T ss_pred eCCCCCCcceEEEEEECCcccC
Confidence 9977778999999999865443
No 91
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.63 E-value=3.4e-15 Score=120.04 Aligned_cols=92 Identities=15% Similarity=0.212 Sum_probs=75.0
Q ss_pred EEEEEEecCCCCCCCCCCcceEEEEEEcCc------ceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeecC
Q 019724 7 DITVVSASDLKTAGMFSKMNVYAVVTIFGE------SQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRSTG 80 (336)
Q Consensus 7 ~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~------~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~d 80 (336)
.+.+++|++|...+.++++||||+|++... .+||++++ ++.||+|| +|.|.+......+....|.|+|||++
T Consensus 3 ~~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~-~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d 80 (110)
T cd04047 3 VELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIK-NTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYD 80 (110)
T ss_pred EEEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEec-cCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeC
Confidence 456779999999999999999999998754 28999965 57999999 68777654322222578999999997
Q ss_pred CCCCCcccEEEEEeceeeec
Q 019724 81 GCFGNSDLGEVFVPVKEMLL 100 (336)
Q Consensus 81 ~~~~d~~LG~~~v~L~~l~~ 100 (336)
...+|++||+++++|++|+.
T Consensus 81 ~~~~d~~iG~~~~~l~~l~~ 100 (110)
T cd04047 81 SSGKHDLIGEFETTLDELLK 100 (110)
T ss_pred CCCCCcEEEEEEEEHHHHhc
Confidence 76689999999999999985
No 92
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.63 E-value=2.8e-15 Score=124.41 Aligned_cols=107 Identities=15% Similarity=0.228 Sum_probs=86.3
Q ss_pred CccEEEEEEEEecCCCCCCCCCCcceEEEEEEcCc-----ceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEE
Q 019724 2 GSRALDITVVSASDLKTAGMFSKMNVYAVVTIFGE-----SQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSI 76 (336)
Q Consensus 2 ~~g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~-----~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V 76 (336)
..++|+|+|++|++|...+..+.+||||+|++... .++|++++ ++.||+|||+|.|.+....+ ....|.|+|
T Consensus 12 ~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~-~~~~P~wne~f~f~i~~~~l--~~~~l~~~v 88 (134)
T cd00276 12 TAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKK-GTLNPVFNEAFSFDVPAEQL--EEVSLVITV 88 (134)
T ss_pred CCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCccee-cCCCCeeeeeEEEECCHHHh--CCcEEEEEE
Confidence 45799999999999998888889999999999764 36888854 57999999999999876532 347899999
Q ss_pred eecCCCCCCcccEEEEEeceeeeccCCCCCCCCeeeeeeCC
Q 019724 77 RSTGGCFGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITTP 117 (336)
Q Consensus 77 ~d~d~~~~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~~ 117 (336)
||++...++++||+++|+|++ .. .. ...|+.|.+.
T Consensus 89 ~d~~~~~~~~~lG~~~i~l~~-~~--~~---~~~W~~l~~~ 123 (134)
T cd00276 89 VDKDSVGRNEVIGQVVLGPDS-GG--EE---LEHWNEMLAS 123 (134)
T ss_pred EecCCCCCCceeEEEEECCCC-CC--cH---HHHHHHHHhC
Confidence 999666689999999999998 22 22 3356777653
No 93
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.62 E-value=3.3e-15 Score=146.93 Aligned_cols=125 Identities=21% Similarity=0.269 Sum_probs=100.7
Q ss_pred ccEEEEEEEEecCCCCCCCCCCcceEEEEEEcCcc---eEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeec
Q 019724 3 SRALDITVVSASDLKTAGMFSKMNVYAVVTIFGES---QTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRST 79 (336)
Q Consensus 3 ~g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~~---~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~ 79 (336)
...|+|+|++|++|...+..+.+||||+++|..++ ++|+|+ ++++||+|||+|.|.|.... ....+|.|.|||.
T Consensus 166 ~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~-r~tlnP~fnEtf~f~v~~~~--l~~~~L~l~V~~~ 242 (421)
T KOG1028|consen 166 LNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVH-RKTLNPVFNETFRFEVPYEE--LSNRVLHLSVYDF 242 (421)
T ss_pred CCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeee-ecCcCCccccceEeecCHHH--hccCEEEEEEEec
Confidence 46899999999999999866789999999999765 899995 56899999999999976653 3568999999999
Q ss_pred CCCCCCcccEEEEEeceeeeccCCCCCCCCeeeeeeCC---CCCcceEEEEEEEEccc
Q 019724 80 GGCFGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITTP---GGRAKGVLNVSYKFGPS 134 (336)
Q Consensus 80 d~~~~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~~---~g~~~G~L~lsl~~~~~ 134 (336)
|+..+|++||++.|+|.++..... ...|+.+... .....|+|.|+|+|.+.
T Consensus 243 drfsr~~~iGev~~~l~~~~~~~~----~~~w~~l~~~~~~~~~~~gel~~sL~Y~p~ 296 (421)
T KOG1028|consen 243 DRFSRHDFIGEVILPLGEVDLLST----TLFWKDLQPSSTDSEELAGELLLSLCYLPT 296 (421)
T ss_pred CCcccccEEEEEEecCcccccccc----ceeeeccccccCCcccccceEEEEEEeecC
Confidence 888899999999999988776211 1245555542 22334899999999875
No 94
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.62 E-value=6.3e-15 Score=119.49 Aligned_cols=80 Identities=20% Similarity=0.317 Sum_probs=65.4
Q ss_pred EEEEEEEecCCCCCCCCCCcceEEEEEEcCc-----ceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeecC
Q 019724 6 LDITVVSASDLKTAGMFSKMNVYAVVTIFGE-----SQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRSTG 80 (336)
Q Consensus 6 L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~-----~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~d 80 (336)
|+|+|++|++|+ +.+||||+|.+... ..||++++ +++||+|||+|.|++.. ...|.|.|||++
T Consensus 1 L~V~V~~A~~L~-----~~sDPYV~l~v~~~~~~~~~~KTk~i~-~TlnPvWnE~F~i~l~~------s~~L~~~v~d~~ 68 (118)
T cd08686 1 LNVIVHSAQGFK-----QSANLYCTLEVDSFGYFVKKAKTRVCR-DTTEPNWNEEFEIELEG------SQTLRILCYEKC 68 (118)
T ss_pred CEEEEEeCCCCC-----CCCCCEEEEEEcCccccceeeeeeeec-CCCCCccceEEEEEeCC------CCEEEEEEEEcc
Confidence 689999999996 45899999998642 38999964 58999999999999963 269999999982
Q ss_pred -------CCCCCcccEEEEEecee
Q 019724 81 -------GCFGNSDLGEVFVPVKE 97 (336)
Q Consensus 81 -------~~~~d~~LG~~~v~L~~ 97 (336)
....|++||++.|.|+-
T Consensus 69 ~~~~~~d~~~~d~~~G~g~i~Ld~ 92 (118)
T cd08686 69 YSKVKLDGEGTDAIMGKGQIQLDP 92 (118)
T ss_pred cccccccccCcccEEEEEEEEECH
Confidence 33478999888877753
No 95
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.57 E-value=6.2e-15 Score=163.80 Aligned_cols=119 Identities=19% Similarity=0.441 Sum_probs=96.6
Q ss_pred ccEEEEEEEEecCCCCCCCCCCcceEEEEEEcCc-ceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeecCC
Q 019724 3 SRALDITVVSASDLKTAGMFSKMNVYAVVTIFGE-SQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRSTGG 81 (336)
Q Consensus 3 ~g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~-~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~d~ 81 (336)
-|.|+|+|++|+||. +.++++||||+|++++. +.|||+++ +++||+|||+|+|.+++.. .+..|+|+|||+|
T Consensus 1979 ~G~L~V~V~~a~nl~--~~~~~sdPyv~l~~g~~~~~kTkvvk-~~~nP~Wne~f~~~~~~p~---~~~~l~iev~d~d- 2051 (2102)
T PLN03200 1979 PGSLTVTIKRGNNLK--QSMGNTNAFCKLTLGNGPPRQTKVVS-HSSSPEWKEGFTWAFDSPP---KGQKLHISCKSKN- 2051 (2102)
T ss_pred CcceEEEEeeccccc--cccCCCCCeEEEEECCCCcccccccC-CCCCCCcccceeeeecCCC---CCCceEEEEEecC-
Confidence 378999999999998 45789999999999966 68899955 5799999999998887653 2467999999994
Q ss_pred CCCCcccEEEEEeceeeeccCCCCCCCCeeeeeeCCCCCcceE---EEEEEEEcc
Q 019724 82 CFGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITTPGGRAKGV---LNVSYKFGP 133 (336)
Q Consensus 82 ~~~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~~~g~~~G~---L~lsl~~~~ 133 (336)
.++++.||.++|+|.+++. ++. ...||+|.. +++..|+ |.|+|+|..
T Consensus 2052 ~f~kd~~G~~~i~l~~vv~--~~~--~~~~~~L~~-~~~k~G~~~~~~~e~~w~~ 2101 (2102)
T PLN03200 2052 TFGKSSLGKVTIQIDRVVM--EGT--YSGEYSLNP-ESNKDGSSRTLEIEFQWSN 2101 (2102)
T ss_pred ccCCCCCceEEEEHHHHhc--Cce--eeeeeecCc-ccccCCCcceEEEEEEecC
Confidence 5677799999999999997 332 235788874 3455777 999999864
No 96
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.56 E-value=4.5e-15 Score=146.27 Aligned_cols=121 Identities=15% Similarity=0.267 Sum_probs=99.8
Q ss_pred cEEEEEEEEecCCCCCCCCCCcceEEEEEEcCcceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeecCCCC
Q 019724 4 RALDITVVSASDLKTAGMFSKMNVYAVVTIFGESQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRSTGGCF 83 (336)
Q Consensus 4 g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~d~~~ 83 (336)
.+|+++|++|.+|..+|..|++||||.+.++..++||+++. ..+||+|||.|.|+..+.. ..|+|.|||+|+..
T Consensus 295 akitltvlcaqgl~akdktg~sdpyvt~qv~ktkrrtrti~-~~lnpvw~ekfhfechnst-----drikvrvwded~dl 368 (1283)
T KOG1011|consen 295 AKITLTVLCAQGLIAKDKTGKSDPYVTAQVGKTKRRTRTIH-QELNPVWNEKFHFECHNST-----DRIKVRVWDEDNDL 368 (1283)
T ss_pred eeeEEeeeecccceecccCCCCCCcEEEeecccchhhHhhh-hccchhhhhheeeeecCCC-----ceeEEEEecCcccH
Confidence 47899999999999999999999999999999999999965 5799999999999998875 78999999997653
Q ss_pred -----------CCcccEEEEEeceeeeccCCCCCCCCeeeeeeC--CCCCcceEEEEEEEEcccCC
Q 019724 84 -----------GNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITT--PGGRAKGVLNVSYKFGPSSS 136 (336)
Q Consensus 84 -----------~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~--~~g~~~G~L~lsl~~~~~~~ 136 (336)
+|||||+..|.+..|.. +..+||.|.+ .+..+.|.|+|.|.+.-+.+
T Consensus 369 ksklrqkl~resddflgqtvievrtlsg------emdvwynlekrtdksavsgairlhisveikge 428 (1283)
T KOG1011|consen 369 KSKLRQKLTRESDDFLGQTVIEVRTLSG------EMDVWYNLEKRTDKSAVSGAIRLHISVEIKGE 428 (1283)
T ss_pred HHHHHHHhhhcccccccceeEEEEeccc------chhhhcchhhccchhhccceEEEEEEEEEcCc
Confidence 48999999998888764 2346777765 33456788777777665443
No 97
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.55 E-value=3.8e-14 Score=107.19 Aligned_cols=82 Identities=23% Similarity=0.382 Sum_probs=70.0
Q ss_pred EEEEEEEecCCCCCCCCCCcceEEEEEEcC---cceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeecCCC
Q 019724 6 LDITVVSASDLKTAGMFSKMNVYAVVTIFG---ESQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRSTGGC 82 (336)
Q Consensus 6 L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~---~~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~d~~ 82 (336)
|+|+|++|++|...+..++.|+||++++.. ..++|+++ +++.+|.|||+|.|.+..... ..|.|+|||++..
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~-~~~~~P~w~e~~~~~~~~~~~----~~l~~~V~~~~~~ 75 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVK-KNTSNPVWNEEFEFPLDDPDL----DSLSFEVWDKDSF 75 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCB-SSBSSEEEEEEEEEEESHGCG----TEEEEEEEEETSS
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeee-eccccceeeeeeeeeeecccc----cceEEEEEECCCC
Confidence 789999999999888788999999999998 44899985 557999999999999766542 4599999999555
Q ss_pred CCCcccEEEE
Q 019724 83 FGNSDLGEVF 92 (336)
Q Consensus 83 ~~d~~LG~~~ 92 (336)
..|++||+++
T Consensus 76 ~~~~~iG~~~ 85 (85)
T PF00168_consen 76 GKDELIGEVK 85 (85)
T ss_dssp SSEEEEEEEE
T ss_pred CCCCEEEEEC
Confidence 5699999975
No 98
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=99.45 E-value=2.5e-13 Score=135.60 Aligned_cols=126 Identities=14% Similarity=0.253 Sum_probs=106.7
Q ss_pred cEEEEEEEEecCCCCCCCCCCcceEEEEEEcCcc-eEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeecCCC
Q 019724 4 RALDITVVSASDLKTAGMFSKMNVYAVVTIFGES-QTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRSTGGC 82 (336)
Q Consensus 4 g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~~-~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~d~~ 82 (336)
..|.|+|.+||||+..+..+..||||.|.++.+. +||.++. +++.|.|.|.|.|+|.... ..|.|-|||+| .
T Consensus 5 ~sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E~v~RT~tv~-ksL~PF~gEe~~~~iP~~F-----~~l~fYv~D~d-~ 77 (800)
T KOG2059|consen 5 QSLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQEEVCRTATVE-KSLCPFFGEEFYFEIPRTF-----RYLSFYVWDRD-L 77 (800)
T ss_pred cceeEEEeecccCCCCCCCCCcCcceEEeecchhhhhhhhhh-hhcCCccccceEEecCcce-----eeEEEEEeccc-c
Confidence 4689999999999999999999999999999877 8999965 5899999999999998765 78999999996 7
Q ss_pred CCCcccEEEEEeceeeeccCCCCCCCCeeeeeeCCCCCcceEEEEEEEEcccCCCC
Q 019724 83 FGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITTPGGRAKGVLNVSYKFGPSSSAN 138 (336)
Q Consensus 83 ~~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~~~g~~~G~L~lsl~~~~~~~~~ 138 (336)
.+|+.||++.|.=.+|.. ..+.+ .|..++-.+.+.+++|+|+|+|++.+.....
T Consensus 78 ~~D~~IGKvai~re~l~~-~~~~d-~W~~L~~VD~dsEVQG~v~l~l~~~e~~~~~ 131 (800)
T KOG2059|consen 78 KRDDIIGKVAIKREDLHM-YPGKD-TWFSLQPVDPDSEVQGKVHLELALTEAIQSS 131 (800)
T ss_pred ccccccceeeeeHHHHhh-CCCCc-cceeccccCCChhhceeEEEEEEeccccCCC
Confidence 799999999998888876 33433 4555555557788999999999999877644
No 99
>PLN02223 phosphoinositide phospholipase C
Probab=99.41 E-value=2.2e-12 Score=128.06 Aligned_cols=117 Identities=19% Similarity=0.349 Sum_probs=87.9
Q ss_pred ccEEEEEEEEecCCC-----CCCCCCCcceEEEEEEcCcc-----eEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEE
Q 019724 3 SRALDITVVSASDLK-----TAGMFSKMNVYAVVTIFGES-----QTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTI 72 (336)
Q Consensus 3 ~g~L~V~vi~Ak~L~-----~~d~~g~~dPYv~v~l~~~~-----~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L 72 (336)
..+|+|+|+++.+|. ..+.....|+||+|.|.+.. +||+| ++++.||+|||+|.|.|....+ ..|
T Consensus 408 ~~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v-~nNg~nPvWne~F~F~i~~PEL----AlL 482 (537)
T PLN02223 408 VKILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTV-KNNEWKPTWGEEFTFPLTYPDL----ALI 482 (537)
T ss_pred ceEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEe-CCCCcCceecceeEEEEEccCc----eEE
Confidence 357999999999874 11234568999999998643 67765 7889999999999999977653 679
Q ss_pred EEEEeecCCCCCCcccEEEEEeceeeeccCCCCCCCCeeeeeeCCCCCcce--EEEEEEEE
Q 019724 73 VYSIRSTGGCFGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITTPGGRAKG--VLNVSYKF 131 (336)
Q Consensus 73 ~v~V~d~d~~~~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~~~g~~~G--~L~lsl~~ 131 (336)
.|+|+|+|....|+|||+++|+|..|.. + ..++.|.++.++..- +|.+.++|
T Consensus 483 rf~V~D~D~~~~ddfiGQ~~LPv~~Lr~-G------yR~VpL~~~~g~~l~~~~Ll~~f~~ 536 (537)
T PLN02223 483 SFEVYDYEVSTADAFCGQTCLPVSELIE-G------IRAVPLYDERGKACSSTMLLTRFKW 536 (537)
T ss_pred EEEEEecCCCCCCcEEEEEecchHHhcC-C------ceeEeccCCCcCCCCCceEEEEEEe
Confidence 9999999666689999999999999886 1 245677766665433 44444443
No 100
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.40 E-value=2.6e-12 Score=106.78 Aligned_cols=95 Identities=15% Similarity=0.161 Sum_probs=76.6
Q ss_pred EEEEEEEEecCCCC--CCCCCC--cceEEEEEEcCc---ceEEEEeeCCCCC--CeeeeEEEEEecchhhh---------
Q 019724 5 ALDITVVSASDLKT--AGMFSK--MNVYAVVTIFGE---SQTTSVARDCGVR--PTWNHQMRFNIDEAAAM--------- 66 (336)
Q Consensus 5 ~L~V~vi~Ak~L~~--~d~~g~--~dPYv~v~l~~~---~~kTkv~~~~t~n--P~WnE~f~F~v~~~~~~--------- 66 (336)
.|+|.|.+|+++.. .+..++ +|+||+++|... +++|.|+.+ ++| ++||+.|.|.+.....+
T Consensus 1 eLRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyr-slnG~~~FNwRfvF~~~~~~~~~~~~~~~~~ 79 (133)
T cd08374 1 ELRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYR-SLDGEGNFNWRFVFPFDYLPAEKKIVVIKKE 79 (133)
T ss_pred CEEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEe-cCCCCcEEeEEEEEeeecCCccceeEEEeec
Confidence 48999999999553 344564 999999999874 399999765 688 99999999988762211
Q ss_pred ----------cCCcEEEEEEeecCCCCCCcccEEEEEeceeeec
Q 019724 67 ----------QNNLTIVYSIRSTGGCFGNSDLGEVFVPVKEMLL 100 (336)
Q Consensus 67 ----------~~~~~L~v~V~d~d~~~~d~~LG~~~v~L~~l~~ 100 (336)
.....|.|+|||.|....|++||+++|+|..+..
T Consensus 80 ~~~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~ 123 (133)
T cd08374 80 HFWSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPR 123 (133)
T ss_pred cccccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhccc
Confidence 2357899999999877789999999999998876
No 101
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=99.40 E-value=2.8e-12 Score=99.14 Aligned_cols=91 Identities=21% Similarity=0.422 Sum_probs=77.0
Q ss_pred EEEEEEEEecCCCCCCCCCCcceEEEEEEcCc---ceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeecCC
Q 019724 5 ALDITVVSASDLKTAGMFSKMNVYAVVTIFGE---SQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRSTGG 81 (336)
Q Consensus 5 ~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~---~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~d~ 81 (336)
+|.|+|+++++|.........++||++++... ..+|+++. ++.||.|||+|.|.+.... ...|+|+|||++.
T Consensus 1 ~l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~-~~~~P~w~e~~~~~~~~~~----~~~l~i~v~~~~~ 75 (101)
T smart00239 1 TLTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVK-NTLNPVWNETFEFEVPPPE----LAELEIEVYDKDR 75 (101)
T ss_pred CeEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEec-CCCCCcccceEEEEecCcc----cCEEEEEEEecCC
Confidence 47899999999988776567899999999876 58999855 4579999999999997653 4789999999955
Q ss_pred CCCCcccEEEEEeceeeec
Q 019724 82 CFGNSDLGEVFVPVKEMLL 100 (336)
Q Consensus 82 ~~~d~~LG~~~v~L~~l~~ 100 (336)
...+.+||.+.++|.++..
T Consensus 76 ~~~~~~~G~~~~~l~~~~~ 94 (101)
T smart00239 76 FGRDDFIGQVTIPLSDLLL 94 (101)
T ss_pred ccCCceeEEEEEEHHHccc
Confidence 4468999999999998876
No 102
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=99.35 E-value=7.3e-12 Score=96.15 Aligned_cols=89 Identities=26% Similarity=0.446 Sum_probs=75.8
Q ss_pred EEEEEEEecCCCCCCCCCCcceEEEEEEcC-cceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeecCCCCC
Q 019724 6 LDITVVSASDLKTAGMFSKMNVYAVVTIFG-ESQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRSTGGCFG 84 (336)
Q Consensus 6 L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~-~~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~d~~~~ 84 (336)
|+|+|++|++|.........|+||++++.. ...+|+++. .+.||.|||+|.|.+... ....|.|+||+++....
T Consensus 1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~~~~~~T~~~~-~~~~P~w~~~~~~~~~~~----~~~~l~i~v~~~~~~~~ 75 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVK-NTLNPVWNETFEFPVLDP----ESDTLTVEVWDKDRFSK 75 (102)
T ss_pred CEEEEEeeeCCCCcCCCCCCCcEEEEEeccCceEecceeC-CCCCCcccceEEEEccCC----CCCEEEEEEEecCCCCC
Confidence 579999999998766667899999999998 668998854 468999999999999762 24789999999965556
Q ss_pred CcccEEEEEeceeee
Q 019724 85 NSDLGEVFVPVKEML 99 (336)
Q Consensus 85 d~~LG~~~v~L~~l~ 99 (336)
+++||++.+.+.++.
T Consensus 76 ~~~ig~~~~~l~~l~ 90 (102)
T cd00030 76 DDFLGEVEIPLSELL 90 (102)
T ss_pred CceeEEEEEeHHHhh
Confidence 899999999999988
No 103
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.34 E-value=5.3e-12 Score=132.34 Aligned_cols=128 Identities=16% Similarity=0.235 Sum_probs=103.2
Q ss_pred CccEEEEEEEEecCCCCCC--CCCCcceEEEEEEcCcc-eEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEee
Q 019724 2 GSRALDITVVSASDLKTAG--MFSKMNVYAVVTIFGES-QTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRS 78 (336)
Q Consensus 2 ~~g~L~V~vi~Ak~L~~~d--~~g~~dPYv~v~l~~~~-~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d 78 (336)
+.|+|.|+|.+|++|+..+ +.+..|+|+++.+.... -||++ ++++.||+|||+|.+.|.... ..|.|+|||
T Consensus 434 aIGVv~vkI~sa~~lk~~d~~i~~~vDpyit~~~~~r~~gkT~v-~~nt~nPvwNEt~Yi~lns~~-----d~L~LslyD 507 (1227)
T COG5038 434 AIGVVEVKIKSAEGLKKSDSTINGTVDPYITVTFSDRVIGKTRV-KKNTLNPVWNETFYILLNSFT-----DPLNLSLYD 507 (1227)
T ss_pred eeEEEEEEEeeccCcccccccccCCCCceEEEEeccccCCccce-eeccCCccccceEEEEecccC-----CceeEEEEe
Confidence 4689999999999999888 56889999999976543 79999 567899999999999987653 789999999
Q ss_pred cCCCCCCcccEEEEEeceeeeccCCCCCCCCeeeeeeCCCCCcceEEEEEEEEcccCCCCC
Q 019724 79 TGGCFGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITTPGGRAKGVLNVSYKFGPSSSANN 139 (336)
Q Consensus 79 ~d~~~~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~~~g~~~G~L~lsl~~~~~~~~~~ 139 (336)
+++..+|+++|++.++|..|..+... ....++++ .+.+..|+|+..++|.+....+.
T Consensus 508 ~n~~~sd~vvG~~~l~L~~L~~~~~~---~ne~~e~~-~~~k~vGrL~yDl~ffp~~e~k~ 564 (1227)
T COG5038 508 FNSFKSDKVVGSTQLDLALLHQNPVK---KNELYEFL-RNTKNVGRLTYDLRFFPVIEDKK 564 (1227)
T ss_pred ccccCCcceeeeEEechHHhhhcccc---ccceeeee-ccCccceEEEEeeeeecccCCcc
Confidence 86777999999999999998873221 12234544 35677899999999998765543
No 104
>PLN02952 phosphoinositide phospholipase C
Probab=99.34 E-value=9.7e-12 Score=125.79 Aligned_cols=118 Identities=17% Similarity=0.255 Sum_probs=90.5
Q ss_pred ccEEEEEEEEecCCCC------CCCCCCcceEEEEEEcCc-----ceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcE
Q 019724 3 SRALDITVVSASDLKT------AGMFSKMNVYAVVTIFGE-----SQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLT 71 (336)
Q Consensus 3 ~g~L~V~vi~Ak~L~~------~d~~g~~dPYv~v~l~~~-----~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~ 71 (336)
..+|+|+|+++.+|.. .+.....|+||+|.+.+. ++||+++.+ +.||+|||+|.|.+.... -..
T Consensus 469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~n-N~nPvWnE~F~F~i~~PE----LAl 543 (599)
T PLN02952 469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIED-NWYPAWNEEFSFPLTVPE----LAL 543 (599)
T ss_pred cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccC-CCCcccCCeeEEEEEcCC----ccE
Confidence 3579999999988742 122234589999998763 289999665 599999999999987654 367
Q ss_pred EEEEEeecCCCCCCcccEEEEEeceeeeccCCCCCCCCeeeeeeCCCCCcceEEEEEEEEc
Q 019724 72 IVYSIRSTGGCFGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITTPGGRAKGVLNVSYKFG 132 (336)
Q Consensus 72 L~v~V~d~d~~~~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~~~g~~~G~L~lsl~~~ 132 (336)
|+|+|||+|....|+|||+++|+|..|.. + ..++.|++..++..+.++|-|+|.
T Consensus 544 lrf~V~D~D~~~~ddfiGq~~lPv~~Lr~-G------yR~VpL~~~~G~~l~~a~Llv~f~ 597 (599)
T PLN02952 544 LRIEVREYDMSEKDDFGGQTCLPVSELRP-G------IRSVPLHDKKGEKLKNVRLLMRFI 597 (599)
T ss_pred EEEEEEecCCCCCCCeEEEEEcchhHhcC-C------ceeEeCcCCCCCCCCCEEEEEEEE
Confidence 99999999776789999999999999986 2 246788877777766666666653
No 105
>PLN02270 phospholipase D alpha
Probab=99.32 E-value=1.5e-11 Score=126.91 Aligned_cols=124 Identities=15% Similarity=0.281 Sum_probs=100.2
Q ss_pred ccEEEEEEEEecCCCCCC------------------CCCCcceEEEEEEcCcc-eEEEEeeCCCCCCeeeeEEEEEecch
Q 019724 3 SRALDITVVSASDLKTAG------------------MFSKMNVYAVVTIFGES-QTTSVARDCGVRPTWNHQMRFNIDEA 63 (336)
Q Consensus 3 ~g~L~V~vi~Ak~L~~~d------------------~~g~~dPYv~v~l~~~~-~kTkv~~~~t~nP~WnE~f~F~v~~~ 63 (336)
+|+|+|+|++|++|++.+ ..+++|+||.|.|...+ .||+++.+...||+|||+|.+.+...
T Consensus 7 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~~ah~ 86 (808)
T PLN02270 7 HGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYCAHM 86 (808)
T ss_pred ecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEeeccC
Confidence 789999999999997521 01357999999999877 79999766557999999999999776
Q ss_pred hhhcCCcEEEEEEeecCCCCCCcccEEEEEeceeeeccCCCCCCCCeeeeeeCCCCCcc---eEEEEEEEEcccCC
Q 019724 64 AAMQNNLTIVYSIRSTGGCFGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITTPGGRAK---GVLNVSYKFGPSSS 136 (336)
Q Consensus 64 ~~~~~~~~L~v~V~d~d~~~~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~~~g~~~---G~L~lsl~~~~~~~ 136 (336)
. ..|+|.|+|. +.++..+||.+.|++.+|+. ++. ...|+.+...++++. -+|+|+|+|.+...
T Consensus 87 ~-----~~v~f~vkd~-~~~g~~~ig~~~~p~~~~~~-g~~---i~~~~~~~~~~~~p~~~~~~~~~~~~f~~~~~ 152 (808)
T PLN02270 87 A-----SNIIFTVKDD-NPIGATLIGRAYIPVEEILD-GEE---VDRWVEILDNDKNPIHGGSKIHVKLQYFEVTK 152 (808)
T ss_pred c-----ceEEEEEecC-CccCceEEEEEEEEHHHhcC-CCc---cccEEeccCCCCCcCCCCCEEEEEEEEEEccc
Confidence 4 7899999998 77788899999999999987 332 335788887665542 48999999998654
No 106
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.30 E-value=1e-11 Score=122.24 Aligned_cols=92 Identities=17% Similarity=0.304 Sum_probs=79.0
Q ss_pred ccEEEEEEEEecCCCCCCCCCCcceEEEEEEcCcc-----eEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEe
Q 019724 3 SRALDITVVSASDLKTAGMFSKMNVYAVVTIFGES-----QTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIR 77 (336)
Q Consensus 3 ~g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~~-----~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~ 77 (336)
.++|+|.|++||+|+..+..+..|+||++++.... +||.+ +++++||+|||+|+|.|....+ .+..|.|+||
T Consensus 297 ~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~~~~kkkT~~-~~~~~npv~nesf~F~vp~~~l--~~~~l~l~V~ 373 (421)
T KOG1028|consen 297 AGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDKRLSKKKTSV-KKKTLNPVFNETFVFDVPPEQL--AEVSLELTVW 373 (421)
T ss_pred CCeEEEEEEEecCCCcccCCCCCCccEEEEEecCCceeeeeeeec-ccCCCCCcccccEEEeCCHHHh--heeEEEEEEE
Confidence 58999999999999999999999999999987543 77777 6779999999999999987654 3478999999
Q ss_pred ecCCCCCCcccEEEEEecee
Q 019724 78 STGGCFGNSDLGEVFVPVKE 97 (336)
Q Consensus 78 d~d~~~~d~~LG~~~v~L~~ 97 (336)
|+|+...+++||.|.+-...
T Consensus 374 d~d~~~~~~~iG~~~lG~~~ 393 (421)
T KOG1028|consen 374 DHDTLGSNDLIGRCILGSDS 393 (421)
T ss_pred EcccccccceeeEEEecCCC
Confidence 99888788899998887654
No 107
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=99.29 E-value=5.3e-13 Score=133.32 Aligned_cols=124 Identities=16% Similarity=0.316 Sum_probs=97.7
Q ss_pred EEEEEEecCCCCCCCCCCcceEEEEEEcCcc-------------------------------eEEEEeeCCCCCCeeeeE
Q 019724 7 DITVVSASDLKTAGMFSKMNVYAVVTIFGES-------------------------------QTTSVARDCGVRPTWNHQ 55 (336)
Q Consensus 7 ~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~~-------------------------------~kTkv~~~~t~nP~WnE~ 55 (336)
.|.+..|++|..++.+|.+||||++.+.... +-|+| ++.|+||+|+|+
T Consensus 117 ~is~~~ak~l~akd~ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlIkatsv-k~~TLnPkW~Ek 195 (1103)
T KOG1328|consen 117 NISLLEAKDLIAKDVNGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLIKATSV-KKKTLNPKWSEK 195 (1103)
T ss_pred HHHHHHhcCccccCCCCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHhhhccc-ccccCCcchhhh
Confidence 4556789999999999999999998765321 34555 777999999999
Q ss_pred EEEEecchhhhcCCcEEEEEEeecCCC------------------------------------CCCcccEEEEEeceeee
Q 019724 56 MRFNIDEAAAMQNNLTIVYSIRSTGGC------------------------------------FGNSDLGEVFVPVKEML 99 (336)
Q Consensus 56 f~F~v~~~~~~~~~~~L~v~V~d~d~~------------------------------------~~d~~LG~~~v~L~~l~ 99 (336)
|.|+|++.. ...+.+.|||+|+. ..|||||++.|+|.+|-
T Consensus 196 F~F~IeDv~----tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFLGciNipl~EiP 271 (1103)
T KOG1328|consen 196 FQFTIEDVQ----TDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGCINIPLAEIP 271 (1103)
T ss_pred eeeehhccc----cceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccccccccccchhcCC
Confidence 999997653 57899999999742 13899999999999997
Q ss_pred ccCCCCCCCCeeeeeeCCCCCcceEEEEEEEEcccCCCC
Q 019724 100 LRSNGDDDKPMSYNITTPGGRAKGVLNVSYKFGPSSSAN 138 (336)
Q Consensus 100 ~~~~~~~~~~~~~~l~~~~g~~~G~L~lsl~~~~~~~~~ 138 (336)
. .+-+ .|..++.++...+++|.++|+|++..+....
T Consensus 272 ~--~Gld-~WFkLepRS~~S~VqG~~~LklwLsT~e~~~ 307 (1103)
T KOG1328|consen 272 P--DGLD-QWFKLEPRSDKSKVQGQVKLKLWLSTKEEGR 307 (1103)
T ss_pred c--chHH-HHhccCcccccccccceEEEEEEEeeecccc
Confidence 6 4433 5666666767788999999999998765433
No 108
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.29 E-value=6.2e-12 Score=99.10 Aligned_cols=84 Identities=15% Similarity=0.260 Sum_probs=70.8
Q ss_pred EEEEEEEecCCCCCC---CCCCcceEEEEEEcCc-ceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeecCC
Q 019724 6 LDITVVSASDLKTAG---MFSKMNVYAVVTIFGE-SQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRSTGG 81 (336)
Q Consensus 6 L~V~vi~Ak~L~~~d---~~g~~dPYv~v~l~~~-~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~d~ 81 (336)
|+|+|.+||+|.... +.+++|+||+|.+.+. +.||++ ++|+.|||+|.|+|.. ..+|+|.|||+ .
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~kaRTr~----srnd~WnE~F~i~Vdk------~nEiel~VyDk-~ 69 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVERARTKP----SRNDRWNEDFEIPVEK------NNEEEVIVYDK-G 69 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEECCEEEEeccC----CCCCcccceEEEEecC------CcEEEEEEEeC-C
Confidence 689999999999877 6688999999999987 588887 4799999999999954 37899999998 3
Q ss_pred CCCCcccEEEEEeceeeec
Q 019724 82 CFGNSDLGEVFVPVKEMLL 100 (336)
Q Consensus 82 ~~~d~~LG~~~v~L~~l~~ 100 (336)
....-.||...|.|++|.+
T Consensus 70 ~~~~~Pi~llW~~~sdi~E 88 (109)
T cd08689 70 GDQPVPVGLLWLRLSDIAE 88 (109)
T ss_pred CCeecceeeehhhHHHHHH
Confidence 3344469999999999876
No 109
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=99.25 E-value=3.8e-11 Score=121.73 Aligned_cols=117 Identities=21% Similarity=0.296 Sum_probs=91.2
Q ss_pred EEEEEEEEecCCC-CCC---CCCCcceEEEEEEcCcc-----eEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEE
Q 019724 5 ALDITVVSASDLK-TAG---MFSKMNVYAVVTIFGES-----QTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYS 75 (336)
Q Consensus 5 ~L~V~vi~Ak~L~-~~d---~~g~~dPYv~v~l~~~~-----~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~ 75 (336)
+|.|+|+++.++. +.+ +....||||.|.+.+.. .+|+++++++.||.|+|+|.|.|...++ ..|+|+
T Consensus 617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPEL----AliRF~ 692 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPEL----ALIRFE 692 (746)
T ss_pred eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccce----eEEEEE
Confidence 7999999999554 322 22457999999987643 9999889999999999999999987754 789999
Q ss_pred EeecCCCCCCcccEEEEEeceeeeccCCCCCCCCeeeeeeCCCCCc--ceEEEEEEEEc
Q 019724 76 IRSTGGCFGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITTPGGRA--KGVLNVSYKFG 132 (336)
Q Consensus 76 V~d~d~~~~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~~~g~~--~G~L~lsl~~~ 132 (336)
|+|+|-..+|||+|+.+||+.+|.. + ...+.|.++.++. .-+|.|.|++.
T Consensus 693 V~d~d~~~~ddF~GQ~tlP~~~L~~---G----yRhVpL~~~~G~~~~~asLfv~i~~~ 744 (746)
T KOG0169|consen 693 VHDYDYIGKDDFIGQTTLPVSELRQ---G----YRHVPLLSREGEALSSASLFVRIAIV 744 (746)
T ss_pred EEecCCCCcccccceeeccHHHhhC---c----eeeeeecCCCCccccceeEEEEEEEe
Confidence 9999666679999999999999886 1 2345666655554 35666666664
No 110
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.24 E-value=1.6e-11 Score=128.73 Aligned_cols=127 Identities=15% Similarity=0.210 Sum_probs=100.0
Q ss_pred ccEEEEEEEEecCCCCCCCCCCcceEEEEEEcCcc-eEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeecCC
Q 019724 3 SRALDITVVSASDLKTAGMFSKMNVYAVVTIFGES-QTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRSTGG 81 (336)
Q Consensus 3 ~g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~~-~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~d~ 81 (336)
.|.|+|.++++.||+..|.++.+||||++.+..++ +||++++ +++||+|||+|.++|.+.. ...|+|.|+|+|.
T Consensus 1039 sG~l~I~~~~~~nl~~~d~ng~sDpfv~~~ln~k~vyktkv~K-ktlNPvwNEe~~i~v~~r~----~D~~~i~v~Dwd~ 1113 (1227)
T COG5038 1039 SGYLTIMLRSGENLPSSDENGYSDPFVKLFLNEKSVYKTKVVK-KTLNPVWNEEFTIEVLNRV----KDVLTINVNDWDS 1113 (1227)
T ss_pred cCcEEEEEeccCCCcccccCCCCCceEEEEecceecccccchh-ccCCCCccccceEeeeccc----cceEEEEEeeccc
Confidence 57899999999999999999999999999999885 9999965 5799999999999997654 4789999999977
Q ss_pred CCCCcccEEEEEeceeeeccCCCCCCCCeeeeeeCCC-CCcceEEEEEEEEcccCCCC
Q 019724 82 CFGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITTPG-GRAKGVLNVSYKFGPSSSAN 138 (336)
Q Consensus 82 ~~~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~~~-g~~~G~L~lsl~~~~~~~~~ 138 (336)
..++|+||.+.|+|..|.. +.... ....|..+. ....|.+++...|+.+...+
T Consensus 1114 ~~knd~lg~~~idL~~l~~--~~~~n--~~i~ldgk~~~~~~g~~~~~~~~r~~~~~n 1167 (1227)
T COG5038 1114 GEKNDLLGTAEIDLSKLEP--GGTTN--SNIPLDGKTFIVLDGTLHPGFNFRSKYALN 1167 (1227)
T ss_pred CCCccccccccccHhhcCc--CCccc--eeeeccCcceEecccEeecceecchhhhhc
Confidence 7799999999999999876 22211 122322211 24567777777777665544
No 111
>PLN02230 phosphoinositide phospholipase C 4
Probab=99.23 E-value=5.1e-11 Score=120.44 Aligned_cols=117 Identities=15% Similarity=0.229 Sum_probs=87.8
Q ss_pred ccEEEEEEEEecCCC----CC--CCCCCcceEEEEEEcCcc-----eEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcE
Q 019724 3 SRALDITVVSASDLK----TA--GMFSKMNVYAVVTIFGES-----QTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLT 71 (336)
Q Consensus 3 ~g~L~V~vi~Ak~L~----~~--d~~g~~dPYv~v~l~~~~-----~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~ 71 (336)
..+|.|+|+++.++. .. +.....|+||+|.|.+.. .||+| .+++.||+|||+|.|.+....+ ..
T Consensus 468 ~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v-~~n~~nP~Wneef~F~l~vPEL----Al 542 (598)
T PLN02230 468 KKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKI-EYDTWTPIWNKEFIFPLAVPEL----AL 542 (598)
T ss_pred CcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceec-cCCCCCCccCCeeEEEEEcCce----eE
Confidence 358999999999863 11 223457999999987632 78887 5678999999999999876543 78
Q ss_pred EEEEEeecCCCCCCcccEEEEEeceeeeccCCCCCCCCeeeeeeCCCCCc--ceEEEEEEEE
Q 019724 72 IVYSIRSTGGCFGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITTPGGRA--KGVLNVSYKF 131 (336)
Q Consensus 72 L~v~V~d~d~~~~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~~~g~~--~G~L~lsl~~ 131 (336)
|+|+|+|+|....|+|||+.+|+|..|.. + ...+.|.++++.. .-+|.+.++|
T Consensus 543 lRf~V~d~d~~~~ddfiGQ~~lPv~~Lr~-G------yR~V~L~~~~G~~l~~~~Ll~~f~~ 597 (598)
T PLN02230 543 LRVEVHEHDINEKDDFGGQTCLPVSEIRQ-G------IHAVPLFNRKGVKYSSTRLLMRFEF 597 (598)
T ss_pred EEEEEEECCCCCCCCEEEEEEcchHHhhC-c------cceEeccCCCcCCCCCCeeEEEEEe
Confidence 99999999666789999999999999886 1 2346777655543 2356665554
No 112
>PLN02222 phosphoinositide phospholipase C 2
Probab=99.20 E-value=1.6e-10 Score=116.65 Aligned_cols=117 Identities=17% Similarity=0.237 Sum_probs=86.7
Q ss_pred ccEEEEEEEEecCCC----C--CCCCCCcceEEEEEEcCc-----ceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcE
Q 019724 3 SRALDITVVSASDLK----T--AGMFSKMNVYAVVTIFGE-----SQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLT 71 (336)
Q Consensus 3 ~g~L~V~vi~Ak~L~----~--~d~~g~~dPYv~v~l~~~-----~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~ 71 (336)
..+|+|+|+++.++. . .+.....|+||+|.|.+. ++||+++.+ +.||+|||+|.|.|....+ ..
T Consensus 451 ~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~n-n~nP~W~e~f~F~i~~PeL----Al 525 (581)
T PLN02222 451 KTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLED-NWIPAWDEVFEFPLTVPEL----AL 525 (581)
T ss_pred cceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCC-CCCcccCCeeEEEEEcCce----eE
Confidence 357999999998742 2 122345799999999743 289999765 4899999999999876543 78
Q ss_pred EEEEEeecCCCCCCcccEEEEEeceeeeccCCCCCCCCeeeeeeCCCCCc--ceEEEEEEEE
Q 019724 72 IVYSIRSTGGCFGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITTPGGRA--KGVLNVSYKF 131 (336)
Q Consensus 72 L~v~V~d~d~~~~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~~~g~~--~G~L~lsl~~ 131 (336)
|+|+|||+|....|+|||+.+|+|..|.. + ...+.|++..+.. .-+|.+.++|
T Consensus 526 lRf~V~d~D~~~~ddfigq~~lPv~~Lr~-G------yR~V~L~~~~g~~l~~a~Lfv~~~~ 580 (581)
T PLN02222 526 LRLEVHEYDMSEKDDFGGQTCLPVWELSQ-G------IRAFPLHSRKGEKYKSVKLLVKVEF 580 (581)
T ss_pred EEEEEEECCCCCCCcEEEEEEcchhhhhC-c------cceEEccCCCcCCCCCeeEEEEEEe
Confidence 99999999666689999999999999886 1 2356777655443 3456666554
No 113
>PLN02228 Phosphoinositide phospholipase C
Probab=99.19 E-value=2.2e-10 Score=115.35 Aligned_cols=120 Identities=17% Similarity=0.280 Sum_probs=90.8
Q ss_pred cEEEEEEEEecCCC----CC--CCCCCcceEEEEEEcCcc-----eEEEEeeCCCCCCee-eeEEEEEecchhhhcCCcE
Q 019724 4 RALDITVVSASDLK----TA--GMFSKMNVYAVVTIFGES-----QTTSVARDCGVRPTW-NHQMRFNIDEAAAMQNNLT 71 (336)
Q Consensus 4 g~L~V~vi~Ak~L~----~~--d~~g~~dPYv~v~l~~~~-----~kTkv~~~~t~nP~W-nE~f~F~v~~~~~~~~~~~ 71 (336)
.+|+|+|+++.+|. .. +.....|+||+|.+.+.. +||+++. ++.||+| ||+|.|.+....+ ..
T Consensus 431 ~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~-n~~nP~W~~e~f~F~~~~pEL----A~ 505 (567)
T PLN02228 431 TTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAV-DQWFPIWGNDEFLFQLRVPEL----AL 505 (567)
T ss_pred ceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccC-CCCCceECCCeEEEEEEcCce----eE
Confidence 47999999999872 11 223457999999987532 7999865 4689999 9999999876543 78
Q ss_pred EEEEEeecCCCCCCcccEEEEEeceeeeccCCCCCCCCeeeeeeCCCCCc--ceEEEEEEEEcccC
Q 019724 72 IVYSIRSTGGCFGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITTPGGRA--KGVLNVSYKFGPSS 135 (336)
Q Consensus 72 L~v~V~d~d~~~~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~~~g~~--~G~L~lsl~~~~~~ 135 (336)
|+|+|+|+|....|+|||+++|+|+.|.. -...+.|.+..++. ..+|.+.+++....
T Consensus 506 lRf~V~D~d~~~~d~figq~~lPv~~Lr~-------GYR~VpL~~~~G~~l~~atLfv~~~~~~~~ 564 (567)
T PLN02228 506 LWFKVQDYDNDTQNDFAGQTCLPLPELKS-------GVRAVRLHDRAGKAYKNTRLLVSFALDPPY 564 (567)
T ss_pred EEEEEEeCCCCCCCCEEEEEEcchhHhhC-------CeeEEEccCCCCCCCCCeEEEEEEEEcCcc
Confidence 99999999666689999999999999876 23456777655554 45688888876543
No 114
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=99.04 E-value=1e-09 Score=111.28 Aligned_cols=120 Identities=23% Similarity=0.285 Sum_probs=90.3
Q ss_pred cEEEEEEEEecCCCCCCCCCCcceEEEEEEcCcc-----eEEEEeeCCCCCCeee-eEEEEEecchhhhcCCcEEEEEEe
Q 019724 4 RALDITVVSASDLKTAGMFSKMNVYAVVTIFGES-----QTTSVARDCGVRPTWN-HQMRFNIDEAAAMQNNLTIVYSIR 77 (336)
Q Consensus 4 g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~~-----~kTkv~~~~t~nP~Wn-E~f~F~v~~~~~~~~~~~L~v~V~ 77 (336)
-+|.|.|+.||.|.+.. -+...|||+|.|.+.. ++|+++.++++||+|| |+|+|+|.+... ..|+|.|+
T Consensus 1065 ~~lsv~vigaRHL~k~g-r~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~----A~lRF~V~ 1139 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPKLG-RSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEF----AFLRFVVY 1139 (1267)
T ss_pred eEEEEEEeeccccccCC-CCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCce----EEEEEEEe
Confidence 36889999999998654 3456799999987643 7888878999999999 999999988753 78999999
Q ss_pred ecCCCC-CCcccEEEEEeceeeeccCCCCCCCCeeeeeeCCC--CCcceEEEEEEEEcccCC
Q 019724 78 STGGCF-GNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITTPG--GRAKGVLNVSYKFGPSSS 136 (336)
Q Consensus 78 d~d~~~-~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~~~--g~~~G~L~lsl~~~~~~~ 136 (336)
|+ +++ ...||++++.|+..|.. ...+..|++.- .-...+|.|.|+..++..
T Consensus 1140 ee-Dmfs~~~FiaqA~yPv~~ik~-------GfRsVpLkN~ySEdlELaSLLv~i~m~~~~~ 1193 (1267)
T KOG1264|consen 1140 EE-DMFSDPNFLAQATYPVKAIKS-------GFRSVPLKNGYSEDLELASLLVFIEMRPVLE 1193 (1267)
T ss_pred cc-cccCCcceeeeeecchhhhhc-------cceeeecccCchhhhhhhhheeeeEeccccC
Confidence 99 555 45699999999988775 22345555421 223456777777766544
No 115
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.91 E-value=3.4e-10 Score=113.61 Aligned_cols=97 Identities=14% Similarity=0.254 Sum_probs=84.4
Q ss_pred ccEEEEEEEEecCCCCCCCCCCcceEEEEEEcCcc-------eEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEE
Q 019724 3 SRALDITVVSASDLKTAGMFSKMNVYAVVTIFGES-------QTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYS 75 (336)
Q Consensus 3 ~g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~~-------~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~ 75 (336)
..+|.|.|+-|+++...|.+|.+||||+|.|.... +||+|+ ++|+||+|+|+|.|.|..+.+..+...|.|+
T Consensus 946 ~q~L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~-~rtLnPVfDE~FeFsVp~e~c~te~Am~~FT 1024 (1103)
T KOG1328|consen 946 AQTLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVV-SRTLNPVFDETFEFSVPPEPCSTETAMLHFT 1024 (1103)
T ss_pred ccchhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhh-hccccchhhhheeeecCccccccccceEEEE
Confidence 45788889999999999999999999999999764 999995 5689999999999999887666667889999
Q ss_pred EeecCCCCCCcccEEEEEeceeeec
Q 019724 76 IRSTGGCFGNSDLGEVFVPVKEMLL 100 (336)
Q Consensus 76 V~d~d~~~~d~~LG~~~v~L~~l~~ 100 (336)
|+|+|=...+||-|++.+-|.++-.
T Consensus 1025 VMDHD~L~sNDFaGEA~L~Lg~vpG 1049 (1103)
T KOG1328|consen 1025 VMDHDYLRSNDFAGEAFLELGDVPG 1049 (1103)
T ss_pred eeccceecccccchHHHHhhCCCCC
Confidence 9999666689999999999888753
No 116
>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=98.90 E-value=2.6e-09 Score=105.08 Aligned_cols=129 Identities=16% Similarity=0.237 Sum_probs=99.5
Q ss_pred ccEEEEEEEEecCCCCCCCC-CCcceEEEEEEcCcceEEEEeeCCCCCCeeeeE-EEEEecchhhhcCCcEEEEEEeecC
Q 019724 3 SRALDITVVSASDLKTAGMF-SKMNVYAVVTIFGESQTTSVARDCGVRPTWNHQ-MRFNIDEAAAMQNNLTIVYSIRSTG 80 (336)
Q Consensus 3 ~g~L~V~vi~Ak~L~~~d~~-g~~dPYv~v~l~~~~~kTkv~~~~t~nP~WnE~-f~F~v~~~~~~~~~~~L~v~V~d~d 80 (336)
-|+|-|+|+.||+|+.+|.. ...|.||+|.+.+..+||.|.. +++||.||.. |+|+|++.++ .+..|.|+|.|+|
T Consensus 2 pgkl~vki~a~r~lpvmdkasd~tdafveik~~n~t~ktdvf~-kslnp~wnsdwfkfevddadl--qdeplqi~lld~d 78 (1169)
T KOG1031|consen 2 PGKLGVKIKAARHLPVMDKASDLTDAFVEIKFANTTFKTDVFL-KSLNPQWNSDWFKFEVDDADL--QDEPLQIRLLDHD 78 (1169)
T ss_pred CCcceeEEEeccCCcccccccccchheeEEEecccceehhhhh-hhcCCcccccceEEecChhhh--ccCCeeEEEeccc
Confidence 37899999999999988764 3568999999999999999965 4899999955 8999988754 3467999999997
Q ss_pred CCCCCcccEEEEEeceeeeccCCC-----CC-CCCeeeeeeCCCCCcceEEEEEEEEccc
Q 019724 81 GCFGNSDLGEVFVPVKEMLLRSNG-----DD-DKPMSYNITTPGGRAKGVLNVSYKFGPS 134 (336)
Q Consensus 81 ~~~~d~~LG~~~v~L~~l~~~~~~-----~~-~~~~~~~l~~~~g~~~G~L~lsl~~~~~ 134 (336)
....+|-||++.|.++-|+..... .. ...-|+.+.+.-...+|+|.+.+++.-.
T Consensus 79 tysandaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdtihgirgeinvivkvdlf 138 (1169)
T KOG1031|consen 79 TYSANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTIHGIRGEINVIVKVDLF 138 (1169)
T ss_pred ccccccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceecccccceeEEEEEEeeh
Confidence 777899999999999987652211 11 1334677765334568999888886543
No 117
>PLN02352 phospholipase D epsilon
Probab=98.78 E-value=3.6e-08 Score=101.86 Aligned_cols=120 Identities=15% Similarity=0.229 Sum_probs=88.4
Q ss_pred CccEEEEEEEEecCCCCC----CCC-CCcceEEEEEEcCcc-eEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEE
Q 019724 2 GSRALDITVVSASDLKTA----GMF-SKMNVYAVVTIFGES-QTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYS 75 (336)
Q Consensus 2 ~~g~L~V~vi~Ak~L~~~----d~~-g~~dPYv~v~l~~~~-~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~ 75 (336)
-+|+|.++|.+|+-+... +.. ...|+||.|.|...+ .|| ++..||+|||+|.+.+.... ...|+|.
T Consensus 8 lhg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v~rt----~~~~~p~w~e~f~i~~ah~~----~~~~~f~ 79 (758)
T PLN02352 8 FHGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKVAKT----SHEYDRVWNQTFQILCAHPL----DSTITIT 79 (758)
T ss_pred cccceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEEecC----CCCCCCccccceeEEeeeec----CCcEEEE
Confidence 478999999999854332 111 123999999998866 566 23469999999999987653 2469999
Q ss_pred EeecCCCCCCcccEEEEEeceeeeccCCCCCCCCeeeeeeCCCCCc-c-eEEEEEEEEcccCCC
Q 019724 76 IRSTGGCFGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITTPGGRA-K-GVLNVSYKFGPSSSA 137 (336)
Q Consensus 76 V~d~d~~~~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~~~g~~-~-G~L~lsl~~~~~~~~ 137 (336)
|+|. ..+||.+.|++.+|+. ++. ....|+.+...++++ . .+|+|+|+|.+....
T Consensus 80 vk~~-----~~~ig~~~~p~~~~~~-g~~--~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 135 (758)
T PLN02352 80 LKTK-----CSILGRFHIQAHQIVT-EAS--FINGFFPLIMENGKPNPELKLRFMLWFRPAELE 135 (758)
T ss_pred EecC-----CeEEEEEEEEHHHhhC-CCc--ccceEEEcccCCCCCCCCCEEEEEEEEEEhhhC
Confidence 9883 6799999999999987 322 134678888765554 3 489999999987654
No 118
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.70 E-value=2.6e-09 Score=99.09 Aligned_cols=130 Identities=15% Similarity=0.174 Sum_probs=94.2
Q ss_pred CccEEEEEEEEecCCCCCCCCCCcceEEEEEEcCcc-----eEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEE
Q 019724 2 GSRALDITVVSASDLKTAGMFSKMNVYAVVTIFGES-----QTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSI 76 (336)
Q Consensus 2 ~~g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~~-----~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V 76 (336)
+++++.++|..|++|+.+++.+..|+|+++.+.... .||++ ..+++|++|||+........+ ......+.+.|
T Consensus 91 ~~~~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t-~~n~lN~~w~etev~~~i~~~-~~~~K~~Rk~v 168 (362)
T KOG1013|consen 91 ESRMLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKT-TRNTLNPEWNETEVYEGITDD-DTHLKVLRKVV 168 (362)
T ss_pred hhhhcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHh-hccCcCcceeccceecccccc-hhhhhhhheee
Confidence 356889999999999999999999999999988643 77777 456899999999876643221 12345678888
Q ss_pred eecCCCCCCcccEEEEEeceeeeccCCCCCCCCeeeeeeC-----CCCCcceEEEEEEEEcc
Q 019724 77 RSTGGCFGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITT-----PGGRAKGVLNVSYKFGP 133 (336)
Q Consensus 77 ~d~d~~~~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~-----~~g~~~G~L~lsl~~~~ 133 (336)
+|++.+.+++++|+.+|.|..|..+.......|+.+.+-. .+.+.+|+|.++|.|..
T Consensus 169 cdn~~~~~~~sqGq~r~~lkKl~p~q~k~f~~cl~~~lp~~rad~~~~E~rg~i~isl~~~s 230 (362)
T KOG1013|consen 169 CDNDKKTHNESQGQSRVSLKKLKPLQRKSFNICLEKSLPSERADRDEDEERGAILISLAYSS 230 (362)
T ss_pred ccCcccccccCcccchhhhhccChhhcchhhhhhhccCCcccccccchhhccceeeeeccCc
Confidence 8987777899999999999888653222112333333321 12356899999988764
No 119
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=98.68 E-value=3e-08 Score=99.81 Aligned_cols=122 Identities=17% Similarity=0.213 Sum_probs=83.3
Q ss_pred EEecCCCCCCCCCCcceEEEEEEcCcc----eEEEEeeCCCCCCeeeeEEEEEecchh-----------hhcCCcEEEEE
Q 019724 11 VSASDLKTAGMFSKMNVYAVVTIFGES----QTTSVARDCGVRPTWNHQMRFNIDEAA-----------AMQNNLTIVYS 75 (336)
Q Consensus 11 i~Ak~L~~~d~~g~~dPYv~v~l~~~~----~kTkv~~~~t~nP~WnE~f~F~v~~~~-----------~~~~~~~L~v~ 75 (336)
++++++-... ++.+||||++++.+.. .+|++.+ .|.+|.|||.|.|++.... .+++...|+|+
T Consensus 138 L~~r~~~P~~-~~~~dp~~~v~~~g~~~~~~~~T~~~k-kt~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~irv~ 215 (800)
T KOG2059|consen 138 LKTRQGLPII-NGQCDPFARVTLCGPSKLKEKKTKVKK-KTTNPQFDEVFYFEVTREESYSKKSLFMPEEEDDMLEIRVD 215 (800)
T ss_pred hhhcccCcee-CCCCCcceEEeecccchhhccccceee-eccCcchhhheeeeeccccccccchhcCcccCCceeeEEEe
Confidence 4444443332 4569999999987654 5999854 5899999999999987651 11235679999
Q ss_pred EeecCCCC-CCcccEEEEEeceeeeccCCCCCCCCeeeeeeC-----CCCCcceEEEEEEEEcccCC
Q 019724 76 IRSTGGCF-GNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITT-----PGGRAKGVLNVSYKFGPSSS 136 (336)
Q Consensus 76 V~d~d~~~-~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~-----~~g~~~G~L~lsl~~~~~~~ 136 (336)
+|++.+.. .++|+|++.|++..+... .. .+.|..++.+. .++...|.++|+++|.....
T Consensus 216 lW~~~~~~~~~~FlGevrv~v~~~~~~-s~-p~~W~~Lqp~~~g~~~~~~~~lGslrl~v~y~~D~V 280 (800)
T KOG2059|consen 216 LWNDLNLVINDVFLGEVRVPVDVLRQK-SS-PAAWYYLQPRPNGEKSSDGGDLGSLRLNVTYTEDHV 280 (800)
T ss_pred eccchhhhhhhhhceeEEeehhhhhhc-cC-ccceEEEecCCCcccCCCCCCccceeeeEEeeecee
Confidence 99943433 699999999999988741 22 22344333332 12445789999999987543
No 120
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=98.33 E-value=4.8e-07 Score=95.42 Aligned_cols=106 Identities=23% Similarity=0.297 Sum_probs=82.4
Q ss_pred ccEEEEEEEEecCCCCCCCCCCcceEEEEEEcCcc-----eEEEEeeCCCCCCeeeeEEEEE-ecchhhhcCCcEEEEEE
Q 019724 3 SRALDITVVSASDLKTAGMFSKMNVYAVVTIFGES-----QTTSVARDCGVRPTWNHQMRFN-IDEAAAMQNNLTIVYSI 76 (336)
Q Consensus 3 ~g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~~-----~kTkv~~~~t~nP~WnE~f~F~-v~~~~~~~~~~~L~v~V 76 (336)
+++|+|.|.-+|+|.-..-....||||++.|.... +||+|+++ ++||+|||.+.++ +..+. ...++|.+.|
T Consensus 1523 ~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrk-t~~PTfnE~LvY~g~p~~~--l~qReLQ~sV 1599 (1639)
T KOG0905|consen 1523 NGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRK-TRNPTFNEMLVYDGFPKEI--LQQRELQVSV 1599 (1639)
T ss_pred CceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccc-cCCCchhhheeecCCchhh--hhhheeeeee
Confidence 67999999999999544434568999999998643 89999665 7999999999887 44332 2347899999
Q ss_pred eecCCCCCCcccEEEEEeceeeeccCCCCCCCCeeeeee
Q 019724 77 RSTGGCFGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNIT 115 (336)
Q Consensus 77 ~d~d~~~~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~ 115 (336)
|..+....+.|||.+.|+|.++....+ ...||.|.
T Consensus 1600 ls~~~~~en~~lg~v~i~L~~~~l~kE----~~~Wy~lg 1634 (1639)
T KOG0905|consen 1600 LSNGGLLENVFLGGVNIPLLKVDLLKE----SVGWYNLG 1634 (1639)
T ss_pred ecccceeeeeeeeeeecchhhcchhhh----hcceeecc
Confidence 999666688999999999998765222 34677775
No 121
>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]
Probab=98.27 E-value=6.2e-07 Score=85.65 Aligned_cols=129 Identities=12% Similarity=0.169 Sum_probs=91.1
Q ss_pred ccEEEEEEEEecCCCCCCCCCCcceEEEEEEc--C---cceEEEEeeCCCCCCeeeeEEEEEecchhh-------hcCCc
Q 019724 3 SRALDITVVSASDLKTAGMFSKMNVYAVVTIF--G---ESQTTSVARDCGVRPTWNHQMRFNIDEAAA-------MQNNL 70 (336)
Q Consensus 3 ~g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~--~---~~~kTkv~~~~t~nP~WnE~f~F~v~~~~~-------~~~~~ 70 (336)
...|++.|+++.++..-.-.-..|-||++.+- + .+.+|.|++ .+.+|.|+|.|.+.+..... .-.+.
T Consensus 366 d~elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik-~t~SPdfde~fklni~rg~~~nr~fqR~fkr~ 444 (523)
T KOG3837|consen 366 DQELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIK-VTPSPDFDEDFKLNIRRGPGLNREFQRRFKRL 444 (523)
T ss_pred hhHhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceee-CCCCCCcccceeeeccCCCcccHHHHHHHHhc
Confidence 44677788888777643322235678887643 2 237888865 58999999999999876210 11356
Q ss_pred EEEEEEeecCCCC-CCcccEEEEEeceeeeccCCCCCCCCeeeeeeCCCCCcceEEEEEEEEcccCC
Q 019724 71 TIVYSIRSTGGCF-GNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITTPGGRAKGVLNVSYKFGPSSS 136 (336)
Q Consensus 71 ~L~v~V~d~d~~~-~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~~~g~~~G~L~lsl~~~~~~~ 136 (336)
.++|+||++...+ +|+|+|++.|.|..|.+ ... .+..+.|++.+..+.|.|.++++++..+.
T Consensus 445 g~kfeifhkggf~rSdkl~gt~nikle~Len--~ce--i~e~~~l~DGRK~vGGkLevKvRiR~Pi~ 507 (523)
T KOG3837|consen 445 GKKFEIFHKGGFNRSDKLTGTGNIKLEILEN--MCE--ICEYLPLKDGRKAVGGKLEVKVRIRQPIG 507 (523)
T ss_pred CeeEEEeeccccccccceeceeeeeehhhhc--ccc--hhhceeccccccccCCeeEEEEEEecccc
Confidence 7999999995554 79999999999987765 332 34567888766667899999999987543
No 122
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.19 E-value=2.7e-06 Score=85.20 Aligned_cols=105 Identities=14% Similarity=0.241 Sum_probs=80.8
Q ss_pred cEEEEEEEEecCCCCCCCCCCcceEEEEEEcCcc-------eEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEE
Q 019724 4 RALDITVVSASDLKTAGMFSKMNVYAVVTIFGES-------QTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSI 76 (336)
Q Consensus 4 g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~~-------~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V 76 (336)
.+++|+|+.|.+|+ ....+...|||+|.+.+.. +.|++ +.++..|.+||+|.|-+.++. +.+..+|.|.|
T Consensus 1125 hkvtvkvvaandlk-wqtsgmFrPFVEV~ivGP~lsDKKRK~~TKt-KsnnWaPKyNEtF~f~Lg~e~-~Pe~YEL~~~V 1201 (1283)
T KOG1011|consen 1125 HKVTVKVVAANDLK-WQTSGMFRPFVEVHIVGPHLSDKKRKFSTKT-KSNNWAPKYNETFHFFLGNEG-GPEHYELQFCV 1201 (1283)
T ss_pred ceEEEEEEeccccc-chhccccccceEEEEecCcccchhhhccccc-cCCCcCcccCceeEEEeccCC-CCceEEEEEee
Confidence 36889999999997 3456778999999986522 67777 667899999999999997753 45567899999
Q ss_pred eecCCCC-CCcccEEEEEeceeeeccCCCCCCCCeeeeeeC
Q 019724 77 RSTGGCF-GNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITT 116 (336)
Q Consensus 77 ~d~d~~~-~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~ 116 (336)
.|+ -.. .|+.||.+.+.|.++..+ ++- -+|+.|.+
T Consensus 1202 KDY-CFAReDRvvGl~VlqL~~va~k--GS~--a~W~pLgr 1237 (1283)
T KOG1011|consen 1202 KDY-CFAREDRVVGLAVLQLRSVADK--GSC--ACWVPLGR 1237 (1283)
T ss_pred hhh-eeecccceeeeeeeehhhHhhc--Cce--eEeeeccc
Confidence 887 333 577899999999999874 332 36777754
No 123
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.09 E-value=4e-06 Score=78.19 Aligned_cols=88 Identities=13% Similarity=0.207 Sum_probs=72.7
Q ss_pred cEEEEEEEEecCCCCCCCCCCcceEEEEEEcCcc-----eEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEee
Q 019724 4 RALDITVVSASDLKTAGMFSKMNVYAVVTIFGES-----QTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRS 78 (336)
Q Consensus 4 g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~~-----~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d 78 (336)
.-|.|+++.|..|...|.++-+|+||.+++.... .||++ ++++++|+||+.|.|++...++ ....+.|.|||
T Consensus 233 ~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~-~K~t~~p~fd~~~~~~i~pgdL--a~~kv~lsvgd 309 (362)
T KOG1013|consen 233 PGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQ-KKKTLNPEFDEEFFYDIGPGDL--AYKKVALSVGD 309 (362)
T ss_pred CceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcc-hhccCCccccccccccCCccch--hcceEEEeecc
Confidence 3588999999999999999999999999988543 78888 5678999999999999987754 45779999999
Q ss_pred cCCCCCCcccEEEEEe
Q 019724 79 TGGCFGNSDLGEVFVP 94 (336)
Q Consensus 79 ~d~~~~d~~LG~~~v~ 94 (336)
.+.-.+.+++|-+.+-
T Consensus 310 ~~~G~s~d~~GG~~~g 325 (362)
T KOG1013|consen 310 YDIGKSNDSIGGSMLG 325 (362)
T ss_pred cCCCcCccCCCccccc
Confidence 9555578888865543
No 124
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=98.06 E-value=9.9e-06 Score=66.25 Aligned_cols=98 Identities=23% Similarity=0.404 Sum_probs=67.9
Q ss_pred EEEEEEEecCCCCC---------CCC----CCcceEEEEEEcC--c--ceEEEEeeCCCCCCeeeeEEEEEec-------
Q 019724 6 LDITVVSASDLKTA---------GMF----SKMNVYAVVTIFG--E--SQTTSVARDCGVRPTWNHQMRFNID------- 61 (336)
Q Consensus 6 L~V~vi~Ak~L~~~---------d~~----g~~dPYv~v~l~~--~--~~kTkv~~~~t~nP~WnE~f~F~v~------- 61 (336)
|.|.|++|.+|+.. ++. --.|.||++.+.. + .++|+++. ++..|+||..+.|.+.
T Consensus 1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVA-rSFcPeF~Hh~Efpc~lv~~~~~ 79 (143)
T cd08683 1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVA-RSFCPEFNHHVEFPCNLVVQRNS 79 (143)
T ss_pred CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchh-hhcCCCccceEEEecccEEEcCC
Confidence 57888998888621 111 1258999999653 2 28888855 5899999999999875
Q ss_pred -ch-hh--hcCCcEEEEEEeecCCCC----------CCcccEEEEEeceeeeccCCC
Q 019724 62 -EA-AA--MQNNLTIVYSIRSTGGCF----------GNSDLGEVFVPVKEMLLRSNG 104 (336)
Q Consensus 62 -~~-~~--~~~~~~L~v~V~d~d~~~----------~d~~LG~~~v~L~~l~~~~~~ 104 (336)
+. ++ -.+..+|.|+||+.+..+ +|-+||.++|++.+|+.+..+
T Consensus 80 Ge~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~rsG 136 (143)
T cd08683 80 GEAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKRSG 136 (143)
T ss_pred CccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcccC
Confidence 10 00 114577999999873222 355799999999999984444
No 125
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=98.03 E-value=1.1e-05 Score=80.35 Aligned_cols=90 Identities=17% Similarity=0.181 Sum_probs=70.6
Q ss_pred EEEEecCCCCCCCCCCcceEEEEEEcC--cc----eEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeecCCC
Q 019724 9 TVVSASDLKTAGMFSKMNVYAVVTIFG--ES----QTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRSTGGC 82 (336)
Q Consensus 9 ~vi~Ak~L~~~d~~g~~dPYv~v~l~~--~~----~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~d~~ 82 (336)
..++|++|..+++++++|+|..+.-.. .. +||+++ +++++|.| ..|.+.+...+..+.+..|.|++||++..
T Consensus 141 ~~~~~~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~-~n~l~p~w-~~~~i~~~~l~~~~~~~~~~i~~~d~~~~ 218 (529)
T KOG1327|consen 141 FSFRAKNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVV-KNTLNPQW-APFSISLQSLCSKDGNRPIQIECYDYDSN 218 (529)
T ss_pred eeeeeeecCcccccccCCcceEEEEecCCCceeecccccee-ccCCCCcc-cccccchhhhcccCCCCceEEEEeccCCC
Confidence 346678999999999999999987542 22 899995 45899999 45666666665445568899999999666
Q ss_pred CCCcccEEEEEeceeeec
Q 019724 83 FGNSDLGEVFVPVKEMLL 100 (336)
Q Consensus 83 ~~d~~LG~~~v~L~~l~~ 100 (336)
.++++||++...+.++..
T Consensus 219 ~~~~~ig~~~tt~~~~~~ 236 (529)
T KOG1327|consen 219 GKHDLIGKFQTTLSELQE 236 (529)
T ss_pred CCcCceeEecccHHHhcc
Confidence 678999999999988863
No 126
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=98.00 E-value=3e-06 Score=88.51 Aligned_cols=88 Identities=9% Similarity=0.118 Sum_probs=73.0
Q ss_pred EEEEEEEEecCCCCCCCCCCcceEEEEEEcCcc--eEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeecCCC
Q 019724 5 ALDITVVSASDLKTAGMFSKMNVYAVVTIFGES--QTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRSTGGC 82 (336)
Q Consensus 5 ~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~~--~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~d~~ 82 (336)
.++|+|++|.+|...|.++++||||+|.++.+. -++.- ..+++||+|.+.|.+...-.. ...|+|+|||+|..
T Consensus 614 LvrVyvv~A~~L~p~D~ng~adpYv~l~lGk~~~~d~~~y-ip~tlnPVfgkmfel~~~lp~----ek~l~v~vyd~D~~ 688 (1105)
T KOG1326|consen 614 LVRVYVVEAFSLQPSDGNGDADPYVKLLLGKKRTLDRAHY-IPNTLNPVFGKMFELECLLPF----EKDLIVEVYDHDLE 688 (1105)
T ss_pred eEEEEEEEeeeccccCCCCCcCceeeeeeccchhhhhhhc-CcCCCCcHHHHHHHhhcccch----hhcceeEEEEeecc
Confidence 467999999999999999999999999999876 44444 346899999998877654432 36799999999777
Q ss_pred CCCcccEEEEEecee
Q 019724 83 FGNSDLGEVFVPVKE 97 (336)
Q Consensus 83 ~~d~~LG~~~v~L~~ 97 (336)
..|+.||+.+|.|+.
T Consensus 689 ~~d~~iget~iDLEn 703 (1105)
T KOG1326|consen 689 AQDEKIGETTIDLEN 703 (1105)
T ss_pred cccchhhceehhhhh
Confidence 789999999999865
No 127
>PLN02964 phosphatidylserine decarboxylase
Probab=97.99 E-value=9.3e-06 Score=83.52 Aligned_cols=86 Identities=17% Similarity=0.193 Sum_probs=69.3
Q ss_pred ccEEEEEEEEecCCCCCCCCCCcce-EEEEEEcCcceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeecCC
Q 019724 3 SRALDITVVSASDLKTAGMFSKMNV-YAVVTIFGESQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRSTGG 81 (336)
Q Consensus 3 ~g~L~V~vi~Ak~L~~~d~~g~~dP-Yv~v~l~~~~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~d~ 81 (336)
.|.+.|+|++|+ +++ .|. |++++++.+.+||.+ ++.|.||+|||...|.|.... ....+|.|||+++
T Consensus 53 ~~~~~~~~~~~~----~~~---~~~~~~~~~~g~~~f~t~~-~~~~~~p~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 120 (644)
T PLN02964 53 SGIALLTLVGAE----MKF---KDKWLACVSFGEQTFRTET-SDSTDKPVWNSEKKLLLEKNG----PHLARISVFETNR 120 (644)
T ss_pred cCeEEEEeehhh----hcc---CCcEEEEEEecceeeeecc-ccccCCcccchhhceEeccCC----cceEEEEEEecCC
Confidence 467888899887 222 365 566777778899999 566899999999999987654 2557999999988
Q ss_pred CCCCcccEEEEEeceeeec
Q 019724 82 CFGNSDLGEVFVPVKEMLL 100 (336)
Q Consensus 82 ~~~d~~LG~~~v~L~~l~~ 100 (336)
...+++++.|+++|.++..
T Consensus 121 ~s~n~lv~~~e~~~t~f~~ 139 (644)
T PLN02964 121 LSKNTLVGYCELDLFDFVT 139 (644)
T ss_pred CCHHHhhhheeecHhhccH
Confidence 8889999999999888776
No 128
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=97.90 E-value=3.5e-05 Score=79.73 Aligned_cols=109 Identities=17% Similarity=0.275 Sum_probs=78.6
Q ss_pred cEEEEEEEEecCCCCCCCCCCcceEEEEEEcCcc-------eEEEEeeCCCCCCeeeeE-EEEE-ecchhhhcCCcEEEE
Q 019724 4 RALDITVVSASDLKTAGMFSKMNVYAVVTIFGES-------QTTSVARDCGVRPTWNHQ-MRFN-IDEAAAMQNNLTIVY 74 (336)
Q Consensus 4 g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~~-------~kTkv~~~~t~nP~WnE~-f~F~-v~~~~~~~~~~~L~v 74 (336)
.+|.|+||++.-|.++. ...||.|.+-+.. +||+++..++.||+|||. |+|. |.-.. -..|.|
T Consensus 703 ~t~sV~VISgqFLSdrk----vgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpe----LA~lRi 774 (1189)
T KOG1265|consen 703 ATLSVTVISGQFLSDRK----VGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPE----LASLRI 774 (1189)
T ss_pred eeEEEEEEeeeeccccc----cCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccc----hhheee
Confidence 57899999999887654 5689999987632 899999999999999865 8886 32222 268999
Q ss_pred EEeecCCCCCCcccEEEEEeceeeeccCCCCCCCCeeeeeeCCCCCcce--EEEEEEEE
Q 019724 75 SIRSTGGCFGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITTPGGRAKG--VLNVSYKF 131 (336)
Q Consensus 75 ~V~d~d~~~~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~~~g~~~G--~L~lsl~~ 131 (336)
.||++ +.+|||.-.++|..|.. + ...+.|++..+...+ .|.|.|.+
T Consensus 775 avyeE----ggK~ig~RIlpvd~l~~---G----Yrhv~LRse~Nqpl~lp~Lfv~i~~ 822 (1189)
T KOG1265|consen 775 AVYEE----GGKFIGQRILPVDGLNA---G----YRHVCLRSESNQPLTLPALFVYIVL 822 (1189)
T ss_pred eeecc----CCceeeeeccchhcccC---c----ceeEEecCCCCCccccceeEEEEEe
Confidence 99998 67899999999987765 1 233455654444332 34444443
No 129
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=97.88 E-value=1.5e-05 Score=60.92 Aligned_cols=90 Identities=14% Similarity=0.201 Sum_probs=64.4
Q ss_pred EEEEEEEecCCCCCCCCC-CcceEEEEEEcCc---ceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeecCC
Q 019724 6 LDITVVSASDLKTAGMFS-KMNVYAVVTIFGE---SQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRSTGG 81 (336)
Q Consensus 6 L~V~vi~Ak~L~~~d~~g-~~dPYv~v~l~~~---~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~d~ 81 (336)
+.++|+.|++|.--...+ ...-|++--+.-. .+||.+ +++..||+|+|+|.|.+....+ .+..|.|.|++.
T Consensus 1 iwitv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~-rrgs~d~~f~ETFVFqi~l~qL--~~V~L~fsv~~~-- 75 (103)
T cd08684 1 IWITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSA-KEGSNDIEFMETFVFAIKLQNL--QTVRLVFKIQTQ-- 75 (103)
T ss_pred CEEEEEEecccccccccCcCCeeEEEEEEecCCCccccchh-hcCCCChhHHHHHHHHHHHhhc--cceEEEEEeecc--
Confidence 358899999996433222 2345665333322 288887 7788999999999999865433 346788899884
Q ss_pred CCCCcccEEEEEeceeeec
Q 019724 82 CFGNSDLGEVFVPVKEMLL 100 (336)
Q Consensus 82 ~~~d~~LG~~~v~L~~l~~ 100 (336)
+.+.+.||+|.+.|+++-+
T Consensus 76 ~~RKe~iG~~sL~l~s~ge 94 (103)
T cd08684 76 TPRKRTIGECSLSLRTLST 94 (103)
T ss_pred CCccceeeEEEeecccCCH
Confidence 5577889999999988765
No 130
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=97.74 E-value=0.00038 Score=59.20 Aligned_cols=130 Identities=15% Similarity=0.229 Sum_probs=87.8
Q ss_pred ccEEEEEEEEecCCCCCCCC--CCcc--eEEEEEEcCcceEEEEeeCCCCCCeeeeEEEEEecchhhh---------cCC
Q 019724 3 SRALDITVVSASDLKTAGMF--SKMN--VYAVVTIFGESQTTSVARDCGVRPTWNHQMRFNIDEAAAM---------QNN 69 (336)
Q Consensus 3 ~g~L~V~vi~Ak~L~~~d~~--g~~d--PYv~v~l~~~~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~---------~~~ 69 (336)
..-|+|+|+.+|-....... +..+ -.+-+.+.++.++|+.+ .++.+|.|+|.|.|++...... .-.
T Consensus 8 ~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QRF~S~~V-p~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~~ 86 (156)
T PF15627_consen 8 RRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQRFRSKPV-PCACEPDFNEEFLFELPRDSFGAGSTATTLLSIS 86 (156)
T ss_pred ceEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCceEecCCc-ccccCCCCCCcEEEEecccccccccchhHhhcCC
Confidence 35688999998865432110 2333 34455667888999984 5789999999999999765311 123
Q ss_pred cEEEEEEeecCCCCCCcccEEEEEeceeeeccCCCCCCCCeeeeeeCCCCC---cceEEEEEEEEcccC
Q 019724 70 LTIVYSIRSTGGCFGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITTPGGR---AKGVLNVSYKFGPSS 135 (336)
Q Consensus 70 ~~L~v~V~d~d~~~~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~~~g~---~~G~L~lsl~~~~~~ 135 (336)
..|++.|...|......++|+-.+.-..++...... .+...+|...... ..|.|.|+|++.+..
T Consensus 87 ~pihivli~~d~~~~~~Lv~s~~ldWR~vL~s~~~~--~~~~vEL~G~~~e~kv~~GiL~l~lELlP~~ 153 (156)
T PF15627_consen 87 DPIHIVLIRTDPSGETTLVGSHFLDWRKVLCSGNGS--TSFTVELCGVGPESKVPVGILDLRLELLPNL 153 (156)
T ss_pred CceEEEEEEecCCCceEeeeeceehHHHHhccCCCc--cceeEEEeccCCCCccceeEEEEEEEeecCC
Confidence 457777776645445588999999888887744332 2455666553333 689999999998754
No 131
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=97.71 E-value=0.0014 Score=54.86 Aligned_cols=125 Identities=17% Similarity=0.184 Sum_probs=78.6
Q ss_pred EEEEEEEEecCCCCCCCCCCcceEEEEEEcCcc---eEEEEeeCCCCCCeeeeEEEEEecchh----hhcCCcEEEEEEe
Q 019724 5 ALDITVVSASDLKTAGMFSKMNVYAVVTIFGES---QTTSVARDCGVRPTWNHQMRFNIDEAA----AMQNNLTIVYSIR 77 (336)
Q Consensus 5 ~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~~---~kTkv~~~~t~nP~WnE~f~F~v~~~~----~~~~~~~L~v~V~ 77 (336)
.+.|+|++..+++. .....+|+....... .+|+.....+..-.|||+|.|.+.-.. ..-....|+|.|+
T Consensus 8 ~~~l~i~~l~~~p~----~~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~v~ 83 (143)
T PF10358_consen 8 QFDLTIHELENLPS----SNGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFSVF 83 (143)
T ss_pred EEEEEEEEeECcCC----CCCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEEEE
Confidence 46788889888875 224456666555543 455554555667899999988764321 1123456888888
Q ss_pred ecCCCCCCcccEEEEEeceeeeccCCCCCCCCeeeeeeCCCCCcceEEEEEEEEcccCC
Q 019724 78 STGGCFGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITTPGGRAKGVLNVSYKFGPSSS 136 (336)
Q Consensus 78 d~d~~~~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~~~g~~~G~L~lsl~~~~~~~ 136 (336)
..........||++.|+|+++..... ......+.|... ......|+|+|.+.....
T Consensus 84 ~~~~~~~k~~lG~~~inLaey~~~~~--~~~~~~~~l~~~-~~~~a~L~isi~~~~~~~ 139 (143)
T PF10358_consen 84 EVDGSGKKKVLGKVSINLAEYANEDE--EPITVRLLLKKC-KKSNATLSISISLSELRE 139 (143)
T ss_pred EecCCCccceEEEEEEEHHHhhCcCC--CcEEEEEeCccC-CCCCcEEEEEEEEEECcc
Confidence 76322222589999999999987321 112344555432 355678888888776543
No 132
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=97.58 E-value=2.2e-05 Score=82.27 Aligned_cols=124 Identities=17% Similarity=0.116 Sum_probs=90.3
Q ss_pred EEEEEEEecCCCCCCCCCCcceEEEEEEcCcceEEEEeeCCCCCCeeeeEEEEEecch-----hhhcCCcEEEEEEeecC
Q 019724 6 LDITVVSASDLKTAGMFSKMNVYAVVTIFGESQTTSVARDCGVRPTWNHQMRFNIDEA-----AAMQNNLTIVYSIRSTG 80 (336)
Q Consensus 6 L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~~~kTkv~~~~t~nP~WnE~f~F~v~~~-----~~~~~~~~L~v~V~d~d 80 (336)
|++.|.+|+.|...+..+.+|+|+.|.+.+..++|.++ .+|+||.||.+++|.-.+. ....+-..++|+|||.|
T Consensus 208 lR~yiyQar~L~a~dk~~~sdp~a~v~f~~qs~~T~~v-~~tl~ptwdq~~~f~~~ei~ge~~~~~~~ppi~v~e~yd~d 286 (1105)
T KOG1326|consen 208 LRSYIYQARALGAPDKDDESDPDAAVEFCGQSKETEVV-PGTLNPTWDQTIIFDEVEIYGEAHLVLKNPPIRVFEVYDLD 286 (1105)
T ss_pred hHHHHHHHHhhcCCCcccCCCchhhhhcccccceeEee-cCcCCCCccceeeccceeecCccchhhcCCCeEEEEeehhh
Confidence 45566788899888888889999999999999999995 5689999999999863221 11223466899999998
Q ss_pred CCCCCcccEEEEEeceeeeccCCCCCCCCeeeeeeCCCCCcceEEEEEEEEcccCC
Q 019724 81 GCFGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITTPGGRAKGVLNVSYKFGPSSS 136 (336)
Q Consensus 81 ~~~~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~~~g~~~G~L~lsl~~~~~~~ 136 (336)
+...++|+|++.+....++. .+ ...|+++.+ .+...|++.++.++.....
T Consensus 287 r~g~~ef~gr~~~~p~V~~~--~p---~lkw~p~~r-g~~l~gd~l~a~eliq~~~ 336 (1105)
T KOG1326|consen 287 RSGINEFKGRKKQRPYVMVQ--CP---ALKWVPTMR-GAFLDGDVLIAAELIQIGK 336 (1105)
T ss_pred hhchHHhhcccccceEEEec--CC---ccceEEeec-ccccccchhHHHHHHhhcC
Confidence 88899999998877665554 22 234566653 4555677766665544433
No 133
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=97.50 E-value=0.0021 Score=61.69 Aligned_cols=126 Identities=14% Similarity=0.215 Sum_probs=93.6
Q ss_pred EEEEEEEecCCCCCCCCCCcceEEEEEEcCcceEEEEeeCCCCCCeeeeEEEEEecchhhh---cCCcEEEEEEeecC-C
Q 019724 6 LDITVVSASDLKTAGMFSKMNVYAVVTIFGESQTTSVARDCGVRPTWNHQMRFNIDEAAAM---QNNLTIVYSIRSTG-G 81 (336)
Q Consensus 6 L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~---~~~~~L~v~V~d~d-~ 81 (336)
+.|.|+++|+.... -+..-.|..+++++...|..+ ..+-.|.||..+.|+++...+. ..+.-|+|++|..| .
T Consensus 2 ivl~i~egr~F~~~---~~~~~vv~a~~ng~~l~TDpv-~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~~ 77 (340)
T PF12416_consen 2 IVLSILEGRNFPQR---PRHPIVVEAKFNGESLETDPV-PHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDGS 77 (340)
T ss_pred EEEEEecccCCCCC---CCccEEEEEEeCCceeeecCC-CCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEecCC
Confidence 67899999998765 245678888999999889874 4578999999999999765432 34677999999986 3
Q ss_pred CCCCcccEEEEEeceee---eccCCCCCCCCeeeeeeCCC---CCcceEEEEEEEEcccCCC
Q 019724 82 CFGNSDLGEVFVPVKEM---LLRSNGDDDKPMSYNITTPG---GRAKGVLNVSYKFGPSSSA 137 (336)
Q Consensus 82 ~~~d~~LG~~~v~L~~l---~~~~~~~~~~~~~~~l~~~~---g~~~G~L~lsl~~~~~~~~ 137 (336)
....+.||.+.++|..+ ..+.. ..+..||.|...+ .+.+=+|.|+|.+..+...
T Consensus 78 ~~~re~iGyv~LdLRsa~~~~~~~~--~~~~~W~~LL~~~~~y~~~KPEl~l~l~ie~~~~~ 137 (340)
T PF12416_consen 78 TGKRESIGYVVLDLRSAVVPQEKNQ--KQKPKWYKLLSSSSKYKKHKPELLLSLSIEDDSKP 137 (340)
T ss_pred CCcceeccEEEEEcccccccccccc--ccCCCeeEccccccccccCCccEEEEEEEeccccc
Confidence 44677899999999988 33111 1255788887642 2246689999998877654
No 134
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=97.46 E-value=0.00083 Score=58.51 Aligned_cols=91 Identities=22% Similarity=0.275 Sum_probs=58.9
Q ss_pred ccEEEEEEEEecCCCCCCCCCCcceEEEEEEcC--cc----eEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEE
Q 019724 3 SRALDITVVSASDLKTAGMFSKMNVYAVVTIFG--ES----QTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSI 76 (336)
Q Consensus 3 ~g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~--~~----~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V 76 (336)
...++|+|+++.+|... ....+.||++.|-. +. .+|+.+. ...++.|||.+.|+|.-..+ .....|.|.|
T Consensus 7 ~~~f~i~i~~~~~~~~~--~~~~~l~V~~~lyhG~~~L~~p~~T~~~~-~~~~~~Wnewl~F~I~i~dL-Pr~ArLciti 82 (173)
T cd08693 7 EEKFSITLHKISNLNAA--ERTMKVGVQAGLFHGGESLCKTVKTSEVS-GKNDPVWNETLEFDINVCDL-PRMARLCFAI 82 (173)
T ss_pred CCCEEEEEEEeccCccC--CCCceEEEEEEEEECCEEccCceEccccC-CCCccccceeEEcccchhcC-ChhHeEEEEE
Confidence 35789999999998752 23467788876543 22 4555422 24679999999998754322 2457899999
Q ss_pred eecCCCC----------------CCcccEEEEEecee
Q 019724 77 RSTGGCF----------------GNSDLGEVFVPVKE 97 (336)
Q Consensus 77 ~d~d~~~----------------~d~~LG~~~v~L~~ 97 (336)
|+..... .+..||.+.+.|-+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd 119 (173)
T cd08693 83 YEVSKKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFD 119 (173)
T ss_pred EEecccccccccccccccccccCcceEEEEEeEEEEc
Confidence 9863221 13457777776654
No 135
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=97.38 E-value=0.0013 Score=56.31 Aligned_cols=89 Identities=17% Similarity=0.225 Sum_probs=59.9
Q ss_pred ccEEEEEEEEecCCCCCCCCCCcceEEEEEEcCcc------eEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEE
Q 019724 3 SRALDITVVSASDLKTAGMFSKMNVYAVVTIFGES------QTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSI 76 (336)
Q Consensus 3 ~g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~~------~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V 76 (336)
.+.|+|+|++++++...+ ..|-||++.|-... ..|+-+. ..++.|||-++|+|.-..+ .....|.|+|
T Consensus 7 ~~~~~v~i~~~~~~~~~~---~~~l~V~v~l~~g~~~L~~pv~T~~v~--~~~~~WnEwL~fpI~i~dL-Pr~ArL~iti 80 (158)
T cd08398 7 NSNLRIKILCATYVNVND---IDKIYVRTGIYHGGEPLCDNVNTQRVP--CSNPRWNEWLDYDIYIPDL-PRSARLCLSI 80 (158)
T ss_pred CCCeEEEEEeeccCCCCC---cCeEEEEEEEEECCEEccCeeEecccC--CCCCccceeEEcccchhcC-ChhheEEEEE
Confidence 357899999999887543 35788888765432 3444322 2679999999998754332 2457899999
Q ss_pred eecCCCC----CCcccEEEEEecee
Q 019724 77 RSTGGCF----GNSDLGEVFVPVKE 97 (336)
Q Consensus 77 ~d~d~~~----~d~~LG~~~v~L~~ 97 (336)
|+..... ....||.+.+.|=+
T Consensus 81 ~~~~~~~~~k~~~~~iG~~ni~LFd 105 (158)
T cd08398 81 CSVKGRKGAKEEHCPLAWGNINLFD 105 (158)
T ss_pred EEEecccCCCCceEEEEEEEEEEEC
Confidence 9973321 12358998888765
No 136
>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.17 E-value=0.00036 Score=66.45 Aligned_cols=105 Identities=18% Similarity=0.187 Sum_probs=74.8
Q ss_pred ccEEEEEEEEecCCCCCCC-CCCcceEEEEEEcCcc-----eEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEE
Q 019724 3 SRALDITVVSASDLKTAGM-FSKMNVYAVVTIFGES-----QTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSI 76 (336)
Q Consensus 3 ~g~L~V~vi~Ak~L~~~d~-~g~~dPYv~v~l~~~~-----~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V 76 (336)
++.|+|.|++|++|..+.- ...+++||+|.+.... .+|+..+ ++.+|.+-..+.|+-... ...|.+.|
T Consensus 268 ~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~-kT~~plyqq~l~f~~sp~-----~k~Lq~tv 341 (405)
T KOG2060|consen 268 KGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSAR-KTLDPLYQQQLSFDQSPP-----GKYLQGTV 341 (405)
T ss_pred cCceeEEEEecccccccCCcccccCceeEEEEcCCCceeccccccccc-ccCchhhhhhhhhccCCC-----ccEEEEEE
Confidence 6789999999999975432 2368899999988654 7788755 467777767777776544 37899999
Q ss_pred ee-cCCCCCCcccEEEEEeceeeeccCCCCCCCCeeeeeeC
Q 019724 77 RS-TGGCFGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITT 116 (336)
Q Consensus 77 ~d-~d~~~~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~ 116 (336)
|. +.++-++.|+|.++|-|.+|-..... ...||.|.-
T Consensus 342 ~gdygRmd~k~fmg~aqi~l~eL~ls~~~---~igwyKlfg 379 (405)
T KOG2060|consen 342 WGDYGRMDHKSFMGVAQIMLDELNLSSSP---VIGWYKLFG 379 (405)
T ss_pred eccccccchHHHhhHHHHHhhhhcccccc---ceeeeeccC
Confidence 95 43444678999999988887652211 235676653
No 137
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=97.14 E-value=0.0031 Score=53.75 Aligned_cols=91 Identities=20% Similarity=0.264 Sum_probs=59.5
Q ss_pred cEEEEEEEEecCCCCCCCCCCcceEEEEEEcCcc------eEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEe
Q 019724 4 RALDITVVSASDLKTAGMFSKMNVYAVVTIFGES------QTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIR 77 (336)
Q Consensus 4 g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~~------~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~ 77 (336)
..++|+|....++...+ ....+.||++.|-... ..|+. .....+..|||.+.|++.-..+ .....|.|.||
T Consensus 8 ~~~~i~i~~~~~~~~~~-~~~~~l~V~~~l~~g~~~l~~~~~t~~-~~~~~~~~Wne~l~F~i~~~~L-P~~arL~itl~ 84 (156)
T cd08380 8 FNLRIKIHGITNINLLD-SEDLKLYVRVQLYHGGEPLCPPQSTKK-VPFSTSVTWNEWLTFDILISDL-PREARLCLSIY 84 (156)
T ss_pred CCeEEEEEeeccccccC-CCceeEEEEEEEEECCEEccCceeccC-CcCCCCCcccceeEccchhhcC-ChhheEEEEEE
Confidence 46788888887775411 2346778887665322 34443 2223679999999998654332 23578999999
Q ss_pred ecCCCC--CCcccEEEEEecee
Q 019724 78 STGGCF--GNSDLGEVFVPVKE 97 (336)
Q Consensus 78 d~d~~~--~d~~LG~~~v~L~~ 97 (336)
+.+... .+..||.+.++|=+
T Consensus 85 ~~~~~~~~~~~~iG~~~~~lFd 106 (156)
T cd08380 85 AVSEPGSKKEVPLGWVNVPLFD 106 (156)
T ss_pred EEecCCCCcceEEEEEeEEeEc
Confidence 874332 35789999998765
No 138
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=97.07 E-value=0.0022 Score=55.68 Aligned_cols=94 Identities=20% Similarity=0.282 Sum_probs=61.2
Q ss_pred ccEEEEEEEEecCCCCCCCCCCcceEEEEEEcCcc------eEEEEee---CCCCCCeeeeEEEEEecchhhhcCCcEEE
Q 019724 3 SRALDITVVSASDLKTAGMFSKMNVYAVVTIFGES------QTTSVAR---DCGVRPTWNHQMRFNIDEAAAMQNNLTIV 73 (336)
Q Consensus 3 ~g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~~------~kTkv~~---~~t~nP~WnE~f~F~v~~~~~~~~~~~L~ 73 (336)
...|.|+|.++.++.........|-||.+.|-... ..|+... .-..+..|||.+.|++.-..+ .....|.
T Consensus 7 ~~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~L-PrearL~ 85 (171)
T cd04012 7 TDLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQL-PRESRLV 85 (171)
T ss_pred cccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcC-ChhHEEE
Confidence 34688999999998765543457788888765422 3444211 112357799999998754332 3457899
Q ss_pred EEEeecCCCC---------CCcccEEEEEecee
Q 019724 74 YSIRSTGGCF---------GNSDLGEVFVPVKE 97 (336)
Q Consensus 74 v~V~d~d~~~---------~d~~LG~~~v~L~~ 97 (336)
|.||+..... .+..||.+.++|=+
T Consensus 86 itl~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd 118 (171)
T cd04012 86 LTLYGTTSSPDGGSNKQRMGPEELGWVSLPLFD 118 (171)
T ss_pred EEEEEEecCCccccccccccceEEEEEeEeeEc
Confidence 9999863322 24568888887655
No 139
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=97.05 E-value=0.005 Score=47.43 Aligned_cols=84 Identities=11% Similarity=0.142 Sum_probs=58.9
Q ss_pred CcceEEEEEEcCcc-eEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeecCCCCCCcccEEEEEeceeeeccC
Q 019724 24 KMNVYAVVTIFGES-QTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRSTGGCFGNSDLGEVFVPVKEMLLRS 102 (336)
Q Consensus 24 ~~dPYv~v~l~~~~-~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~d~~~~d~~LG~~~v~L~~l~~~~ 102 (336)
..+..+++.+++.. ..|.- +. -.+-.|+++|.|+++.. ++|+|.||-+|- ..+.|...+.|.+...
T Consensus 8 ~~eV~avLklDn~~VgqT~W-k~-~s~q~WDQ~Fti~LdRs------RELEI~VywrD~---RslCav~~lrLEd~~~-- 74 (98)
T cd08687 8 CSEVSAVLKLDNTVVGQTQW-KP-KSNQAWDQSFTLELERS------RELEIAVYWRDW---RSLCAVKFLKLEDERH-- 74 (98)
T ss_pred ccceEEEEEEcCeEEeeccc-cc-cccccccceeEEEeecc------cEEEEEEEEecc---hhhhhheeeEhhhhcc--
Confidence 36788999999865 55554 32 35889999999999764 799999998732 4567777888877432
Q ss_pred CCCCCCCeeeeeeCCCCCcceEEEEEEEE
Q 019724 103 NGDDDKPMSYNITTPGGRAKGVLNVSYKF 131 (336)
Q Consensus 103 ~~~~~~~~~~~l~~~~g~~~G~L~lsl~~ 131 (336)
. ..+. -.++|.|...++|
T Consensus 75 ~------~~~~-----lepqg~l~~ev~f 92 (98)
T cd08687 75 E------VQLD-----MEPQLCLVAELTF 92 (98)
T ss_pred c------ceec-----cccccEEEEEEEe
Confidence 1 1222 3457888888777
No 140
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=97.01 E-value=0.008 Score=52.50 Aligned_cols=73 Identities=14% Similarity=0.162 Sum_probs=46.7
Q ss_pred cEEEEEEEEecCCCCCCCCCCcceEEEEEEcCcc-----eEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEee
Q 019724 4 RALDITVVSASDLKTAGMFSKMNVYAVVTIFGES-----QTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRS 78 (336)
Q Consensus 4 g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~~-----~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d 78 (336)
..++|+|+++..+. .+.......||++.|-... .+|+... -+.++.|||-+.|+|.-..+ .....|+|.||+
T Consensus 10 ~~friki~~~~~~~-~~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~-~~~~~~WnEwL~f~I~~~dL-P~~arLc~ti~~ 86 (178)
T cd08399 10 RKFRVKILGIDIPV-LPRNTDLTVFVEANIQHGQQVLCQRRTSPKP-FTEEVLWNTWLEFDIKIKDL-PKGALLNLQIYC 86 (178)
T ss_pred CCEEEEEEeecccC-cCCCCceEEEEEEEEEECCeecccceeeccC-CCCCccccccEECccccccC-ChhhEEEEEEEE
Confidence 46888888887432 2223334577777654322 3555433 35679999999998754432 235789999998
Q ss_pred c
Q 019724 79 T 79 (336)
Q Consensus 79 ~ 79 (336)
.
T Consensus 87 ~ 87 (178)
T cd08399 87 G 87 (178)
T ss_pred E
Confidence 6
No 141
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=96.98 E-value=0.0027 Score=50.80 Aligned_cols=100 Identities=14% Similarity=0.231 Sum_probs=55.1
Q ss_pred EEEEEEcC-cceEEEEeeCCCCCCeeeeEEEEEecchhhh---cCCcEEEEEEeecCCCCCCcccEEEEEeceeeeccCC
Q 019724 28 YAVVTIFG-ESQTTSVARDCGVRPTWNHQMRFNIDEAAAM---QNNLTIVYSIRSTGGCFGNSDLGEVFVPVKEMLLRSN 103 (336)
Q Consensus 28 Yv~v~l~~-~~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~---~~~~~L~v~V~d~d~~~~d~~LG~~~v~L~~l~~~~~ 103 (336)
||.+.+.. +.+.|.++. +.+|.+|.+..|.|....+- .....|.|||+.. .....+.||.++|+|.+++++..
T Consensus 2 Fct~dFydfEtq~Tpvv~--G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa-~g~d~~tla~~~i~l~~ll~~~~ 78 (107)
T PF11618_consen 2 FCTYDFYDFETQTTPVVR--GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQA-LGSDFETLAAGQISLRPLLESNG 78 (107)
T ss_dssp EEEE-STT---EE---EE--SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE--SS-EEEEEEEEE--SHHHH--S
T ss_pred EEEEEeeceeeeccccee--CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEee-ccCCeEEEEEEEeechhhhcCCC
Confidence 66666554 448888865 68999999998888654321 1246799999987 43346679999999999996322
Q ss_pred CCCCCCeeeeeeCCCCCcceEEEEEEEEc
Q 019724 104 GDDDKPMSYNITTPGGRAKGVLNVSYKFG 132 (336)
Q Consensus 104 ~~~~~~~~~~l~~~~g~~~G~L~lsl~~~ 132 (336)
. ....+..+...+++.-|.|.+.+++.
T Consensus 79 ~--~i~~~~~l~g~~~~~~g~l~y~~rl~ 105 (107)
T PF11618_consen 79 E--RIHGSATLVGVSGEDFGTLEYWIRLR 105 (107)
T ss_dssp ----EEEEEEE-BSSS-TSEEEEEEEEEE
T ss_pred c--eEEEEEEEeccCCCeEEEEEEEEEec
Confidence 1 12345666666777899999988875
No 142
>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=96.73 E-value=0.0034 Score=58.66 Aligned_cols=116 Identities=11% Similarity=0.074 Sum_probs=73.8
Q ss_pred ccEEEEEEEEecCCCCCCC--CCCcceEEEEEEcCcc-eEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeec
Q 019724 3 SRALDITVVSASDLKTAGM--FSKMNVYAVVTIFGES-QTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRST 79 (336)
Q Consensus 3 ~g~L~V~vi~Ak~L~~~d~--~g~~dPYv~v~l~~~~-~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~ 79 (336)
.|.|.|++..+|+|+-... .-..+-||++.++.+. .||.| +..+..=.|.|+|..+|.+. ..|.+-||.|
T Consensus 50 tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~drqh~aRt~v-rs~~~~f~w~e~F~~Dvv~~------~vl~~lvySW 122 (442)
T KOG1452|consen 50 TGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDRQHPARTRV-RSSGPGFAWAEDFKHDVVNI------EVLHYLVYSW 122 (442)
T ss_pred cceEEEEEecccccccChhccCceeeeeeeeeecccCcccccc-ccCCCCccchhhceeecccc------eeeeEEEeec
Confidence 5789999999999975432 2345789999988765 66766 54455668999999988654 5789999999
Q ss_pred CCCCCCcccEEEEEeceeeeccCCCCCCCCeeeeeeCCCCCcceEEEEEEEEcc
Q 019724 80 GGCFGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITTPGGRAKGVLNVSYKFGP 133 (336)
Q Consensus 80 d~~~~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~~~g~~~G~L~lsl~~~~ 133 (336)
+.-.++++.=.--|.+..+.+. +. + + .+.|. -+++|.+-|.|.+..
T Consensus 123 ~pq~RHKLC~~g~l~~~~v~rq-sp-d-~--~~Al~---lePrgq~~~r~~~~D 168 (442)
T KOG1452|consen 123 PPQRRHKLCHLGLLEAFVVDRQ-SP-D-R--VVALY---LEPRGQPPLRLPLAD 168 (442)
T ss_pred Cchhhccccccchhhhhhhhhc-CC-c-c--eeeee---cccCCCCceecccCC
Confidence 6666777632223333333331 11 1 1 12222 245666666666553
No 143
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=96.40 E-value=0.011 Score=50.79 Aligned_cols=73 Identities=15% Similarity=0.281 Sum_probs=50.2
Q ss_pred CCcceEEEEEEcCcc------eEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeecCCCCCCcccEEEEEece
Q 019724 23 SKMNVYAVVTIFGES------QTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRSTGGCFGNSDLGEVFVPVK 96 (336)
Q Consensus 23 g~~dPYv~v~l~~~~------~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~d~~~~d~~LG~~~v~L~ 96 (336)
...|-||++.|-... .+|+. +.-+....|||-+.|.|.-..+ ..+..|+|+||+.+.......||.++++|=
T Consensus 28 ~~~~l~V~~~l~~~~~~L~~pv~T~~-~~f~~~~~WnEwl~fpI~i~dL-P~~a~L~iti~~~~~~~~~~~vg~~~~~lF 105 (159)
T cd08397 28 PNSDLFVTCQVFDDGKPLTLPVQTSY-KPFKNRRNWNEWLTLPIKYSDL-PRNSQLAITIWDVSGTGKAVPFGGTTLSLF 105 (159)
T ss_pred CCCCEEEEEEEEECCEeccCcEEccc-cCCCCCcccceeEEcccchhcC-ChhheEEEEEEEecCCCCceEEEEEEEeeE
Confidence 347888888765432 45554 2234678899999998765432 235789999999844335668999998875
Q ss_pred e
Q 019724 97 E 97 (336)
Q Consensus 97 ~ 97 (336)
+
T Consensus 106 d 106 (159)
T cd08397 106 N 106 (159)
T ss_pred C
Confidence 4
No 144
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=96.26 E-value=0.01 Score=59.49 Aligned_cols=58 Identities=10% Similarity=0.147 Sum_probs=46.1
Q ss_pred eEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeecCCCC----CCcccEEEEEeceeeec
Q 019724 38 QTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRSTGGCF----GNSDLGEVFVPVKEMLL 100 (336)
Q Consensus 38 ~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~d~~~----~d~~LG~~~v~L~~l~~ 100 (336)
.||.+++. .+||.|.++|.+....+. ...|+++++|.++.. .++|+|++.+.|..++.
T Consensus 43 ~rte~i~~-~~~p~f~~~~~l~y~fE~----vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs 104 (529)
T KOG1327|consen 43 GRTEVIRN-VLNPFFTKKFLLQYRFEK----VQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVS 104 (529)
T ss_pred cceeeeec-cCCccceeeechhheeee----eeeEEEEEeecCCccCCcchhcccceeeeehhhhhh
Confidence 58888665 599999999887765543 478999999976542 57899999999998876
No 145
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=96.14 E-value=0.064 Score=44.91 Aligned_cols=59 Identities=19% Similarity=0.278 Sum_probs=38.5
Q ss_pred EEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeecCCCCCC----cccEEEEEeceee
Q 019724 39 TTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRSTGGCFGN----SDLGEVFVPVKEM 98 (336)
Q Consensus 39 kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~d~~~~d----~~LG~~~v~L~~l 98 (336)
+|+.+..+..++.|||.+.|+|.-..+ .....|+|.||+.+....+ ..||.+.++|=+.
T Consensus 23 ~T~~~~~~~~~~~W~e~l~F~i~i~~L-Pr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~lFd~ 85 (142)
T PF00792_consen 23 STSYVPFSFSRPKWDEWLTFPIPISDL-PREARLCFTLYGVDSKKKSKKKKVPLGWVNLPLFDY 85 (142)
T ss_dssp E-S-EESS-SSEEEEEEEEEEEEGGGS--TTEEEEEEEEEEECSTTT--EEEEEEEEEEESB-T
T ss_pred eccccccccccceEeeEEEeecChHHC-ChhHeEEEEEEEecCCCccccceeEEEEEEEEeECC
Confidence 555433222689999999998754332 3457899999997444444 6899999987653
No 146
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=96.10 E-value=0.069 Score=47.05 Aligned_cols=57 Identities=19% Similarity=0.300 Sum_probs=40.9
Q ss_pred eEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeecCCCC-C-CcccEEEEEecee
Q 019724 38 QTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRSTGGCF-G-NSDLGEVFVPVKE 97 (336)
Q Consensus 38 ~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~d~~~-~-d~~LG~~~v~L~~ 97 (336)
++|-|.. .+.+|.|+|++++.|..... ....|.|++++..... . .+.+|.+.++|-+
T Consensus 55 ~~S~V~y-H~~~P~W~EtiKi~lP~~~~--~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL~~ 113 (189)
T cd08695 55 YRSFVLY-HNNSPRWNETIKLPIPIDKF--RGSHLRFEFRHCSTKDKGEKKLFGFSFVPLMR 113 (189)
T ss_pred EEEEEEE-cCCCCCCceeEEEecChhhC--CCeeEEEEEEEeeeccCCCCCceEEEEEeecc
Confidence 7888754 46899999999999977642 4567888887752211 1 2679999999843
No 147
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=96.05 E-value=0.091 Score=46.02 Aligned_cols=57 Identities=12% Similarity=0.247 Sum_probs=34.7
Q ss_pred eEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeecCCCC-C--CcccEEEEEecee
Q 019724 38 QTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRSTGGCF-G--NSDLGEVFVPVKE 97 (336)
Q Consensus 38 ~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~d~~~-~--d~~LG~~~v~L~~ 97 (336)
++|.|. ..+.+|.|+|+|++.|.... .++..|.|++++..... + +..+|.+.++|.+
T Consensus 61 ~~S~v~-yh~k~P~f~deiKi~LP~~l--~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 61 YYSSVY-YHNKNPQFNDEIKIQLPPDL--FPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD 120 (184)
T ss_dssp EE-----TT-SS-EEEEEEEEEE-CCC--CTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred EEEEEE-ecCCCCCccEEEEEEcCchh--cccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence 556663 44689999999999997653 34578999999863322 2 2689999999987
No 148
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=96.04 E-value=0.084 Score=46.69 Aligned_cols=56 Identities=9% Similarity=0.160 Sum_probs=40.5
Q ss_pred eEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeecCCCC-C---CcccEEEEEece
Q 019724 38 QTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRSTGGCF-G---NSDLGEVFVPVK 96 (336)
Q Consensus 38 ~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~d~~~-~---d~~LG~~~v~L~ 96 (336)
++|-|.. ...+|.|+|++++.|..... ....|.|++++..... + +..+|.+.++|-
T Consensus 55 ~~S~V~Y-h~~~P~W~EtIKl~lP~~~~--~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~ 114 (196)
T cd08694 55 YKSVIYY-QVDKPKWFETFKVAIPIEDF--KSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM 114 (196)
T ss_pred EEEEEEe-ecCCCCCceeEEEecChhhC--CCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence 7777743 35899999999999976642 4577889988752111 2 356999999985
No 149
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=95.50 E-value=0.17 Score=43.70 Aligned_cols=72 Identities=21% Similarity=0.218 Sum_probs=52.8
Q ss_pred CCcceEEEEEEcCcc-eEEEEee-CCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeecCCCCCCcccEEEEEeceeeec
Q 019724 23 SKMNVYAVVTIFGES-QTTSVAR-DCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRSTGGCFGNSDLGEVFVPVKEMLL 100 (336)
Q Consensus 23 g~~dPYv~v~l~~~~-~kTkv~~-~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~d~~~~d~~LG~~~v~L~~l~~ 100 (336)
.+..-|++|.+.++. .+|+... .....-.+||.|.+.|.... ..|.|+||.. ....+.+|+++.|+|-....
T Consensus 35 ~~~~~~ikl~~N~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~~P-----esi~l~i~E~-~~~~~~~la~v~vpvP~~~~ 108 (168)
T PF15625_consen 35 QKTRYYIKLFFNDKEVSRTRSRPLWSDFRVHFNEIFNVQITRWP-----ESIKLEIYEK-SGLSDRLLAEVFVPVPGSTV 108 (168)
T ss_pred hheeEEEEEEECCEEEEeeeeEecCCCeEEeccCEEEEEEecCC-----CEEEEEEEEc-cCccceEEEEEEeeCCCCcc
Confidence 346789999999876 5565522 12334556888988886643 7899999998 44788999999999876544
No 150
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=94.96 E-value=0.13 Score=40.53 Aligned_cols=72 Identities=15% Similarity=0.204 Sum_probs=45.2
Q ss_pred EEEEEEEecCCCCCCCCCCcceEEEEEEcCcc------eEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeec
Q 019724 6 LDITVVSASDLKTAGMFSKMNVYAVVTIFGES------QTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRST 79 (336)
Q Consensus 6 L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~~------~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~ 79 (336)
+.+++...+++.........+.||++.|-... ..|+. +.-..+..|||-+.|++.-..+ .....|.|.||+.
T Consensus 13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~-~~~~~~~~Wnewl~f~i~i~~L-Pr~a~L~~~i~~~ 90 (100)
T smart00142 13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSY-KPFFPSVKWNEWLTFPIQISDL-PREARLCITIYEV 90 (100)
T ss_pred eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecc-cCCCCCcccceeEEccCchhcC-ChhhEEEEEEEEe
Confidence 55666666666543322224788888765422 35554 3334568999999998654322 2357899999986
No 151
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=94.90 E-value=0.37 Score=41.96 Aligned_cols=56 Identities=13% Similarity=0.304 Sum_probs=40.0
Q ss_pred eEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeecCCC-----CCCcccEEEEEecee
Q 019724 38 QTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRSTGGC-----FGNSDLGEVFVPVKE 97 (336)
Q Consensus 38 ~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~d~~-----~~d~~LG~~~v~L~~ 97 (336)
++|-+ ..+ .+|.|+|+|++.|.... .....|.|++++.+.. .....+|.+.++|.+
T Consensus 55 ~~sv~-~~~-k~p~f~deiKi~LP~~l--~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~ 115 (178)
T cd08679 55 YTSVV-YYH-KNPVFNDEIKIQLPADL--TPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD 115 (178)
T ss_pred EEEEE-EcC-CCCCCceeEEEecCCcc--CCCeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence 44444 444 79999999999995542 2457899999986322 235679999999876
No 152
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=94.46 E-value=0.24 Score=51.74 Aligned_cols=16 Identities=31% Similarity=0.789 Sum_probs=9.1
Q ss_pred CCCCCeeeeEEEEEec
Q 019724 46 CGVRPTWNHQMRFNID 61 (336)
Q Consensus 46 ~t~nP~WnE~f~F~v~ 61 (336)
++.+|.|+..|+|+|+
T Consensus 440 ~~~DPdf~yr~~l~id 455 (1102)
T KOG1924|consen 440 TGMDPDFKYRFRLDID 455 (1102)
T ss_pred CCCCCCcchhhcccCc
Confidence 3456666665555553
No 153
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=93.39 E-value=0.41 Score=50.09 Aligned_cols=9 Identities=11% Similarity=0.187 Sum_probs=4.0
Q ss_pred EEeceeeec
Q 019724 92 FVPVKEMLL 100 (336)
Q Consensus 92 ~v~L~~l~~ 100 (336)
.|++..|++
T Consensus 453 ~id~~~liD 461 (1102)
T KOG1924|consen 453 DIDLTELID 461 (1102)
T ss_pred cCcHHHHHH
Confidence 344444443
No 154
>PTZ00447 apical membrane antigen 1-like protein; Provisional
Probab=93.01 E-value=1 Score=43.00 Aligned_cols=97 Identities=11% Similarity=0.129 Sum_probs=64.3
Q ss_pred CcceEEEEEEcCcceEEEEeeCCCCCC-eeeeEEEEEecchhhhcCCcEEEEEEeecCCCCCCcccEEEEEecee-eecc
Q 019724 24 KMNVYAVVTIFGESQTTSVARDCGVRP-TWNHQMRFNIDEAAAMQNNLTIVYSIRSTGGCFGNSDLGEVFVPVKE-MLLR 101 (336)
Q Consensus 24 ~~dPYv~v~l~~~~~kTkv~~~~t~nP-~WnE~f~F~v~~~~~~~~~~~L~v~V~d~d~~~~d~~LG~~~v~L~~-l~~~ 101 (336)
...-|++++.+....+|..+..+-.+- .-.+...+.+..- +.+|+|.||.. ...+...||.+.|.+++ ++.+
T Consensus 73 ~khiyIef~~Gr~d~TT~~IpTsKK~RI~IqqRV~IkIRQc-----DnTLkI~lfKK-kLvkk~hIgdI~InIn~dIIdk 146 (508)
T PTZ00447 73 YKHIYIIFSTDKYDFTTDEIPTNKKNRIHIDQRVDIKIRQC-----DETLRVDLFTT-KLTKKVHIGQIKIDINASVISK 146 (508)
T ss_pred ceeEEEEEEcCceEEEccccccCcCceEEEeeeeeeeeeec-----CceEEEEEEec-cccceeEEEEEEecccHHHHhc
Confidence 457899999888887775543321222 2234444444332 47899999998 66788889999999875 4542
Q ss_pred CCCCCCCCeeeeeeCCCCCcceEEEEEEE
Q 019724 102 SNGDDDKPMSYNITTPGGRAKGVLNVSYK 130 (336)
Q Consensus 102 ~~~~~~~~~~~~l~~~~g~~~G~L~lsl~ 130 (336)
. -.+..||.+. +++...+.|.||+.
T Consensus 147 ~---FPKnkWy~c~-kDGq~~cRIqLSFh 171 (508)
T PTZ00447 147 S---FPKNEWFVCF-KDGQEICKVQMSFY 171 (508)
T ss_pred c---CCccceEEEe-cCCceeeeEEEEeh
Confidence 2 2255678875 56777888887765
No 155
>PF06219 DUF1005: Protein of unknown function (DUF1005); InterPro: IPR010410 This is a family of plant proteins with undetermined function.
Probab=92.60 E-value=1.1 Score=43.86 Aligned_cols=108 Identities=14% Similarity=0.147 Sum_probs=59.6
Q ss_pred CcceEEEEEEcCcceEEEEee---CCCCC-Ce-eeeEEEEEecchhhhc---------CCcEEEEEEeecCCC-------
Q 019724 24 KMNVYAVVTIFGESQTTSVAR---DCGVR-PT-WNHQMRFNIDEAAAMQ---------NNLTIVYSIRSTGGC------- 82 (336)
Q Consensus 24 ~~dPYv~v~l~~~~~kTkv~~---~~t~n-P~-WnE~f~F~v~~~~~~~---------~~~~L~v~V~d~d~~------- 82 (336)
...+||+|+|.+-..+|..+- ..+.+ |. -+-.-.|.+++..++. ....|+|.||.- +.
T Consensus 35 sspCfC~IrL~~fP~Qta~vPLi~~~~~~~p~~~~~Aa~F~Ld~s~l~~l~~~~~f~~~~~~L~i~VY~G-r~G~tCGv~ 113 (460)
T PF06219_consen 35 SSPCFCEIRLKGFPSQTAPVPLISSSEPEPPDSHSLAASFHLDKSDLRRLLAKPCFYSPRPCLEISVYTG-RRGSTCGVG 113 (460)
T ss_pred CCCeEEEEecCCCCccceeeeeccCCCCCCCCcCCcceEEecCHHHHHHHhCCCccccCCceEEEEEEEC-CCCCccccc
Confidence 457899999998664444321 11111 11 1223456665543321 125799999984 32
Q ss_pred CCCcccEEEEEeceeeeccCCCCCC--CCeeeeeeCCC----CCcceEEEEEEEEccc
Q 019724 83 FGNSDLGEVFVPVKEMLLRSNGDDD--KPMSYNITTPG----GRAKGVLNVSYKFGPS 134 (336)
Q Consensus 83 ~~d~~LG~~~v~L~~l~~~~~~~~~--~~~~~~l~~~~----g~~~G~L~lsl~~~~~ 134 (336)
.+.++||+++|+|.--.. ++... ..-|+.+-+.+ ....-+|||.++.+++
T Consensus 114 ~~~klLG~v~vpldl~~a--e~kp~v~hnGWi~iGk~~~~~~~~~~aeLHl~Vr~EpD 169 (460)
T PF06219_consen 114 NSGKLLGKVRVPLDLKWA--EGKPVVFHNGWISIGKNKQGSGKSPSAELHLVVRAEPD 169 (460)
T ss_pred ccceEEEEEEEEeccccc--cCCeeEEEccceecCCCCCCCCCCCcceEEEEEeccCC
Confidence 246899999999873221 22111 22344544321 1235789999887653
No 156
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=91.71 E-value=2.3 Score=37.39 Aligned_cols=57 Identities=7% Similarity=0.250 Sum_probs=40.7
Q ss_pred eEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeecCCC------C---CCcccEEEEEecee
Q 019724 38 QTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRSTGGC------F---GNSDLGEVFVPVKE 97 (336)
Q Consensus 38 ~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~d~~------~---~d~~LG~~~v~L~~ 97 (336)
.+|.|... +.+|.|+|++.+.|.... .....|.|++++.+.. . .+..+|-+.++|-+
T Consensus 58 ~~s~V~yh-~k~P~f~dEiKI~LP~~l--~~~hHLlFtFyHvsc~~~~k~~~~~~~e~~~Gys~lPLl~ 123 (185)
T cd08697 58 AYAAVLHH-NQNPEFYDEIKIELPTQL--HEKHHLLFTFYHVSCDINKKGKKKDGVETPVGYAWLPLLK 123 (185)
T ss_pred EEEEEEEc-CCCCccceeEEEecCCcC--CCCeeEEEEEEeeccccccccccCCCccceEEEEEEeeec
Confidence 66777555 589999999999987653 2356788888886311 1 13569999999865
No 157
>PF14909 SPATA6: Spermatogenesis-assoc protein 6
Probab=91.05 E-value=2.6 Score=35.28 Aligned_cols=91 Identities=18% Similarity=0.185 Sum_probs=62.0
Q ss_pred EEEEEEEEecCCCCCCCCCCcceEEEEEEcCcceEEEEeeCCCCCCeeeeEEEEEecch-hh-------hcCCcEEEEEE
Q 019724 5 ALDITVVSASDLKTAGMFSKMNVYAVVTIFGESQTTSVARDCGVRPTWNHQMRFNIDEA-AA-------MQNNLTIVYSI 76 (336)
Q Consensus 5 ~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~~~kTkv~~~~t~nP~WnE~f~F~v~~~-~~-------~~~~~~L~v~V 76 (336)
.|+|+.+.|-+.- +..+-|.|+.|++.+.-+||+... ...-=.++|+|+|+-... .. ..+...+.||+
T Consensus 3 eL~i~aVTCPGv~---L~~~~~vyL~v~~lg~~~~T~~~p-pvFPllfhek~~FeK~F~~~~dp~~l~~~Le~e~~~iEL 78 (140)
T PF14909_consen 3 ELEIHAVTCPGVW---LCDKGDVYLSVCILGQYKRTRCLP-PVFPLLFHEKFRFEKVFPNAVDPAQLADLLEDETVYIEL 78 (140)
T ss_pred EEEEEEEecCCeE---eCCCCCEEEEEEEcccEeecccCC-CcCCeeEeeEEEeEEEecCCCCHHHHHHHhhcCcEEEEE
Confidence 4666667765543 334679999999999999998732 223335699999974221 11 12467788999
Q ss_pred eecCCCCCCcccEEEEEeceeeec
Q 019724 77 RSTGGCFGNSDLGEVFVPVKEMLL 100 (336)
Q Consensus 77 ~d~d~~~~d~~LG~~~v~L~~l~~ 100 (336)
+..... ..+.|+..+-.++|++-
T Consensus 79 iQl~~~-~g~iLA~ye~n~rDfLf 101 (140)
T PF14909_consen 79 IQLVPP-AGEILAYYEENTRDFLF 101 (140)
T ss_pred EEEeCC-CCcEEEEEeccccceEc
Confidence 887333 36789998888888875
No 158
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=90.84 E-value=3.2 Score=36.28 Aligned_cols=57 Identities=11% Similarity=0.273 Sum_probs=39.8
Q ss_pred eEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeecCCCC------CCcccEEEEEecee
Q 019724 38 QTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRSTGGCF------GNSDLGEVFVPVKE 97 (336)
Q Consensus 38 ~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~d~~~------~d~~LG~~~v~L~~ 97 (336)
.+|.|... +.+|.|+|++.+.|.... .....|.|++++.+-.. ....+|-+.++|-+
T Consensus 56 ~~S~V~yH-nk~P~f~DEiKi~LP~~l--~~~hHLlFtF~Hvs~~~k~~~~~~e~~~Gys~lPL~~ 118 (179)
T cd08696 56 AYTAVTYH-NKSPDFYDEIKIKLPADL--TDNHHLLFTFYHISCQKKQEGGSVETPIGYTWLPLLR 118 (179)
T ss_pred EEEEEEEe-CCCCcccceEEEEcCCCC--CCCeEEEEEEEEeeccccccCCCccceEEEEEEeeec
Confidence 66776544 589999999999987653 23567888888752211 13569999888864
No 159
>PF09849 DUF2076: Uncharacterized protein conserved in bacteria (DUF2076); InterPro: IPR018648 This family of hypothetical prokaryotic proteins has no known function but includes putative perimplasmic ligand-binding sensor proteins.
Probab=90.78 E-value=0.95 Score=41.62 Aligned_cols=24 Identities=21% Similarity=0.256 Sum_probs=18.7
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHh
Q 019724 287 AGLGLGMGAGLLGGLAGGLTLAAA 310 (336)
Q Consensus 287 ~~~~~~~~~g~~~g~~~g~~~~~~ 310 (336)
.+.++..++||+||+|++.+|.++
T Consensus 138 Lg~A~~TAAGVAGG~lL~n~i~~l 161 (247)
T PF09849_consen 138 LGGAAQTAAGVAGGMLLANGIESL 161 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566888999999988888876
No 160
>PF14186 Aida_C2: Cytoskeletal adhesion; PDB: 2QZQ_A 2QZ5_A.
Probab=88.63 E-value=1.1 Score=37.79 Aligned_cols=91 Identities=15% Similarity=0.161 Sum_probs=46.4
Q ss_pred EEEEEEEEecCCCCCCCCCCcceEEEEEEcCcc-------eEEEEeeCC-CCCCeeeeEEEEEecchhhhcCCcEEEEEE
Q 019724 5 ALDITVVSASDLKTAGMFSKMNVYAVVTIFGES-------QTTSVARDC-GVRPTWNHQMRFNIDEAAAMQNNLTIVYSI 76 (336)
Q Consensus 5 ~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~~-------~kTkv~~~~-t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V 76 (336)
.|+|+|.+.. |++.. .-.|||+.|++.+.. +.|.+.... +..=.||.+..+...-+.+ .+...|.||+
T Consensus 14 ~l~v~Iekig-lkda~--~~~~P~~tVSV~D~~G~~ve~~QdTpv~~~~~~~yv~f~~~v~lqtple~l-p~Gaai~fE~ 89 (147)
T PF14186_consen 14 YLSVFIEKIG-LKDAS--QYIDPYFTVSVKDGNGKDVEPPQDTPVGSRREDNYVHFNNTVHLQTPLEKL-PKGAAIFFEF 89 (147)
T ss_dssp EEEEEEEEEE--TTGG--G-EEEEEEEEEE-TTS-BSS--EE--S-SEEETTEEEEEEEEE-SS-GGGS--TT-EEEEEE
T ss_pred eEEEEEEEEE-ECChH--HccCCeEEEEEECCCCCCccccccCCCcccccCCEEEEcccEEEcCCHHHC-CCceEEEEEE
Confidence 4666666654 65432 347999999987643 666654221 2234455544443332222 2456789999
Q ss_pred eecCCCCC--CcccEEEEEeceeeec
Q 019724 77 RSTGGCFG--NSDLGEVFVPVKEMLL 100 (336)
Q Consensus 77 ~d~d~~~~--d~~LG~~~v~L~~l~~ 100 (336)
+++ +..+ -...+.+.+.+++|..
T Consensus 90 kH~-K~kk~k~S~kcw~fme~dei~~ 114 (147)
T PF14186_consen 90 KHY-KPKKKKTSTKCWAFMELDEIKP 114 (147)
T ss_dssp EEE-ETTTTCEEEEEEEEEEGGG--S
T ss_pred Eee-eccceeeeeeEEEEEEhhhccC
Confidence 987 3332 2336777777777665
No 161
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=85.39 E-value=1.7 Score=46.40 Aligned_cols=101 Identities=13% Similarity=0.226 Sum_probs=63.4
Q ss_pred cceEEEEEEcCcc-eEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeecCCCCC-CcccEEEEEeceeeeccC
Q 019724 25 MNVYAVVTIFGES-QTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRSTGGCFG-NSDLGEVFVPVKEMLLRS 102 (336)
Q Consensus 25 ~dPYv~v~l~~~~-~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~d~~~~-d~~LG~~~v~L~~l~~~~ 102 (336)
++.|+.+.|.... .+|....+.=.++.|+++|...+.... ..+++.|.+. +..+ ..++|.+++++..++. +
T Consensus 138 ~e~Ylt~~l~~~~~~~t~~~~~f~e~s~~~f~~~~~~~h~~-----g~v~~~~~~~-~~~G~s~~w~~v~~s~~~~~~-~ 210 (887)
T KOG1329|consen 138 LENYLTVVLHKARYRRTHVIYEFLENSRWSFSFDIGFAHKA-----GYVIFRVKGA-RVPGWSKRWGRVKISFLQYCS-G 210 (887)
T ss_pred ccchheeeechhhhhchhhhhcccccchhhhhccccccccc-----cEEEEeecCC-ccccceeEEEEeccchhhhhc-c
Confidence 4788888887655 556554432268999988876665443 6788888877 5555 8899999999998887 2
Q ss_pred CCCCCCCeeeeeeCCCCCc---ceEEEEEEEEcccC
Q 019724 103 NGDDDKPMSYNITTPGGRA---KGVLNVSYKFGPSS 135 (336)
Q Consensus 103 ~~~~~~~~~~~l~~~~g~~---~G~L~lsl~~~~~~ 135 (336)
.. ...++.+...+++. .-.+++++.|+...
T Consensus 211 ~~---~~~~~~Il~~d~~~~~~~~~~~~~~~~~~~~ 243 (887)
T KOG1329|consen 211 HR---IGGWFPILDNDGKPHQKGSNESLRLGFTPME 243 (887)
T ss_pred cc---ccceeeeeccCCccccCCcccceEEeeEeec
Confidence 22 12344544433222 22355556655543
No 162
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=84.86 E-value=13 Score=35.98 Aligned_cols=90 Identities=18% Similarity=0.251 Sum_probs=59.5
Q ss_pred EEEEEEEEecCCCCCC---CC---CCcceEEEEEEcCcceEEEEeeCCCCCCee--eeEEEEEecchhhh-----cCCcE
Q 019724 5 ALDITVVSASDLKTAG---MF---SKMNVYAVVTIFGESQTTSVARDCGVRPTW--NHQMRFNIDEAAAM-----QNNLT 71 (336)
Q Consensus 5 ~L~V~vi~Ak~L~~~d---~~---g~~dPYv~v~l~~~~~kTkv~~~~t~nP~W--nE~f~F~v~~~~~~-----~~~~~ 71 (336)
+|.|+|..|++|...- .. +....|...+|.+....|.. .+...+|.+ ++...|.|...... .....
T Consensus 193 vLsvti~~a~nL~~Lip~~l~~~~~~~~f~f~YsllGn~Vt~~~-F~~l~~~~f~~er~s~vRirSS~~~L~~yf~~~~~ 271 (340)
T PF12416_consen 193 VLSVTIKFAENLEQLIPSSLPEEQNHSGFFFYYSLLGNDVTTEP-FKSLSSPSFPPERASGVRIRSSLRVLRRYFQQIPK 271 (340)
T ss_pred EEEEehhhhhhHHhhccccccccCCCccEEEEEEecCcEeEeee-ccccCCCCcCeeeeeEEeecccHHHHHHHHhhCCC
Confidence 5778888999886541 11 23567888888888777776 344577766 33333665432110 12346
Q ss_pred EEEEEeecCCCCCCcccEEEEEeceeeec
Q 019724 72 IVYSIRSTGGCFGNSDLGEVFVPVKEMLL 100 (336)
Q Consensus 72 L~v~V~d~d~~~~d~~LG~~~v~L~~l~~ 100 (336)
|.|.++.. +..||.+.|+|..++.
T Consensus 272 L~I~Lc~g-----~~~Lg~~~v~l~~Ll~ 295 (340)
T PF12416_consen 272 LQIHLCCG-----NQSLGSTSVPLQPLLP 295 (340)
T ss_pred eEEEEeeC-----CcEEEEEEEEhhhccC
Confidence 77777764 6789999999999986
No 163
>smart00157 PRP Major prion protein. The prion protein is a major component of scrapie-associated fibrils in Creutzfeldt-Jakob disease, kuru, Gerstmann-Straussler syndrome and bovine spongiform encephalopathy.
Probab=84.37 E-value=3.5 Score=36.04 Aligned_cols=30 Identities=30% Similarity=0.292 Sum_probs=21.0
Q ss_pred cccCCCCCCchhhHHHHHHHHHHHHHHHHh
Q 019724 281 KKKGMAAGLGLGMGAGLLGGLAGGLTLAAA 310 (336)
Q Consensus 281 ~~~~~~~~~~~~~~~g~~~g~~~g~~~~~~ 310 (336)
|++.....+.+++++|+++|+|+|.+|+.|
T Consensus 81 KP~~~~k~~~~aAgagAv~g~~~GY~lG~~ 110 (217)
T smart00157 81 KPKTNMKHVAGAAAAGAVVGGLGGYMLGSA 110 (217)
T ss_pred CCCcchHHHHHhhhcchhhhhccccccccc
Confidence 444334456666778888888888888886
No 164
>PF14924 DUF4497: Protein of unknown function (DUF4497)
Probab=82.71 E-value=3.5 Score=32.99 Aligned_cols=80 Identities=8% Similarity=0.115 Sum_probs=48.9
Q ss_pred EEEEEecchhhh--cCCcEEEEEEeecCC---CCCCcccEEEEEeceeeeccC-----C-----CCCCCCeeeeeeCCCC
Q 019724 55 QMRFNIDEAAAM--QNNLTIVYSIRSTGG---CFGNSDLGEVFVPVKEMLLRS-----N-----GDDDKPMSYNITTPGG 119 (336)
Q Consensus 55 ~f~F~v~~~~~~--~~~~~L~v~V~d~d~---~~~d~~LG~~~v~L~~l~~~~-----~-----~~~~~~~~~~l~~~~g 119 (336)
+..|.+....+. .....|.+.+|+.-. .....+||++.|+|.+++.+- + ........|.|.+..+
T Consensus 12 ScLF~~~~~~L~~~l~~~pl~i~~~~~~~~~~~~~~~liG~~~i~l~~~~~~i~~~~~~~~~~p~s~~~k~~f~L~~~~~ 91 (112)
T PF14924_consen 12 SCLFALTPEDLQQSLSSFPLYIVVKKVPPGFPTPPPMLIGSCPISLAEAFNRILKDSAECNGQPSSKTIKGTFPLFDENG 91 (112)
T ss_pred EEEEEcCHHHHHHHhhCCceEEEEEecCCCCCCCccceeeEEEecHHHHHHHHHHHHHhhccCCCchhhcceeEeecCCC
Confidence 445555444332 123456666655312 234568999999998876311 0 0111334688888777
Q ss_pred CcceEEEEEEEEccc
Q 019724 120 RAKGVLNVSYKFGPS 134 (336)
Q Consensus 120 ~~~G~L~lsl~~~~~ 134 (336)
...|+|.|.+++.-.
T Consensus 92 ~~~G~I~l~iRLscl 106 (112)
T PF14924_consen 92 NPVGEISLYIRLSCL 106 (112)
T ss_pred ceeeeEEEEEEEecC
Confidence 889999999998754
No 165
>KOG3543 consensus Ca2+-dependent activator protein [Signal transduction mechanisms]
Probab=82.37 E-value=7.2 Score=40.26 Aligned_cols=82 Identities=20% Similarity=0.383 Sum_probs=58.4
Q ss_pred EEEEEEEEecCCCCCCCCCCcceEEEEEEcCcceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeecCCC--
Q 019724 5 ALDITVVSASDLKTAGMFSKMNVYAVVTIFGESQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRSTGGC-- 82 (336)
Q Consensus 5 ~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~d~~-- 82 (336)
.|+|.|.+..+|+...- ..=.||.+.+.+.+..|.-. . ...|.|...=.|...... ..++|.+|.+...
T Consensus 342 smevvvmevqglksvap--nrivyctmevegeklqtdqa-e-askp~wgtqgdfstthpl-----pvvkvklftestgvl 412 (1218)
T KOG3543|consen 342 SMEVVVMEVQGLKSVAP--NRIVYCTMEVEGEKLQTDQA-E-ASKPKWGTQGDFSTTHPL-----PVVKVKLFTESTGVL 412 (1218)
T ss_pred eeeEEEeeeccccccCC--CeeEEEEEEecccccccchh-h-hcCCCCCcCCCcccCCCC-----ceeEEEEEeecceeE
Confidence 46778888888876542 22379999999988777753 2 367999887777765543 6788999887322
Q ss_pred -CCCcccEEEEEec
Q 019724 83 -FGNSDLGEVFVPV 95 (336)
Q Consensus 83 -~~d~~LG~~~v~L 95 (336)
+.|+-||++.+--
T Consensus 413 aledkelgrvil~p 426 (1218)
T KOG3543|consen 413 ALEDKELGRVILQP 426 (1218)
T ss_pred EeechhhCeEEEec
Confidence 2688899987654
No 166
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=80.78 E-value=0.43 Score=49.33 Aligned_cols=97 Identities=7% Similarity=-0.065 Sum_probs=55.9
Q ss_pred CcceEEEEEEcCcce-EEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeecCCCCCCcccEEEEEeceeeeccC
Q 019724 24 KMNVYAVVTIFGESQ-TTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRSTGGCFGNSDLGEVFVPVKEMLLRS 102 (336)
Q Consensus 24 ~~dPYv~v~l~~~~~-kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~d~~~~d~~LG~~~v~L~~l~~~~ 102 (336)
..++|+.|.+..... .+.+ +..+..|.|+|+|+++|... ..+.|.|+.+.....+.+...+++-.+++.. .
T Consensus 27 al~~y~~v~vk~~~~~~~~~-~~~~~~~~~~~~F~~~v~~~------~~~~i~v~~~~~~~~~~~~a~~~~~~e~~k~-~ 98 (694)
T KOG0694|consen 27 ALQPYLAVELKVKQGAENMT-KVELRIPELRETFHVEVVAG------GAKNIIVLLKSPDPKALSEAQLSLQEESQKL-L 98 (694)
T ss_pred hhhhhheeccceeecccccC-CCCCCCchhhhheeeeeecC------CceEEEEEecCCcchhhHHHhHHHHHHHHHH-H
Confidence 468899888876552 3333 55689999999999998654 5788888887211122333333333333332 1
Q ss_pred CCCCCCCeeeeeeCCCCCcceEEEEEEEEcccC
Q 019724 103 NGDDDKPMSYNITTPGGRAKGVLNVSYKFGPSS 135 (336)
Q Consensus 103 ~~~~~~~~~~~l~~~~g~~~G~L~lsl~~~~~~ 135 (336)
+.. ...|..+ +..|+|.+.+.+....
T Consensus 99 ~~~--~~~w~~~-----~~~g~~~~~~~~~~~~ 124 (694)
T KOG0694|consen 99 ALE--QRLWVLI-----EELGTLLKPAALTGTL 124 (694)
T ss_pred hhh--hhhcccc-----ccccceeeeecccCcC
Confidence 111 1223332 3357777777766543
No 167
>PF07162 B9-C2: Ciliary basal body-associated, B9 protein; InterPro: IPR010796 Proteins in this entry include the MSK1 protein (Q9NXB0 from SWISSPROT) and other known or predicted flagellar basal body proteome components [] or cilia-containing species. Although the function is unknown, a cilia-specific role has been suggested for the poorly characterised B9 domain [, , ]. Mutations in MSK1 have been shown to cause Meckel syndrome type 1, a severe foetal development disorder that has been reported in most populations.
Probab=79.94 E-value=26 Score=30.05 Aligned_cols=81 Identities=15% Similarity=0.172 Sum_probs=49.8
Q ss_pred EEEEEEEecCCCCCCCCCCcceEEEEEEcC----------c-ceEEEEeeCC----CCCCeeeeEEEEEecchhhhcCCc
Q 019724 6 LDITVVSASDLKTAGMFSKMNVYAVVTIFG----------E-SQTTSVARDC----GVRPTWNHQMRFNIDEAAAMQNNL 70 (336)
Q Consensus 6 L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~----------~-~~kTkv~~~~----t~nP~WnE~f~F~v~~~~~~~~~~ 70 (336)
+.-.|.+|++.. ..+-||+..+.- . ...|.+.+.. +..-.||.-|.+.+..... ..=-
T Consensus 4 v~G~I~~a~~f~------~~~l~~~y~~~~g~~W~~~~g~~~~G~Tq~~~~~~~~~~~~~~f~~P~d~~~~~~~~-~gwP 76 (168)
T PF07162_consen 4 VIGEIESAEGFE------EDNLYCRYQLVHGPDWKLISGLSLEGQTQISKSSSYGNDDVAVFNHPFDLHFKSTNP-QGWP 76 (168)
T ss_pred EEEEEEEEECCC------CCCEEEEEEEEeCCCeEECCCCcceEEcceeecCcccCCCceEEeccEEEEEEeCCC-CCCc
Confidence 344678888654 346688766542 1 2455554322 3457899888877755431 1225
Q ss_pred EEEEEEeecCCCCCCcccEEEEE
Q 019724 71 TIVYSIRSTGGCFGNSDLGEVFV 93 (336)
Q Consensus 71 ~L~v~V~d~d~~~~d~~LG~~~v 93 (336)
.|.|+||..|...++.+.|-..+
T Consensus 77 ~L~l~V~~~D~~gr~~~~GYG~~ 99 (168)
T PF07162_consen 77 QLVLQVYSLDSWGRDRVEGYGFC 99 (168)
T ss_pred eEEEEEEEEcccCCeEEeEEeEE
Confidence 79999999966667777664433
No 168
>KOG2419 consensus Phosphatidylserine decarboxylase [Lipid transport and metabolism]
Probab=65.54 E-value=0.4 Score=49.12 Aligned_cols=37 Identities=16% Similarity=0.156 Sum_probs=29.6
Q ss_pred CCcceEEEEEEcCcceEEEEeeCCCCCCeeeeEEEEEec
Q 019724 23 SKMNVYAVVTIFGESQTTSVARDCGVRPTWNHQMRFNID 61 (336)
Q Consensus 23 g~~dPYv~v~l~~~~~kTkv~~~~t~nP~WnE~f~F~v~ 61 (336)
-+.+++++.+++.+.+||+.. +.+.+|+|||. .|++.
T Consensus 303 f~~~~~~itsf~~~~frt~~~-~~~e~piyNe~-~~E~~ 339 (975)
T KOG2419|consen 303 FKDKWLAITSFGEQTFRTEIS-DDTEKPIYNED-EREDS 339 (975)
T ss_pred cCCCchheeecchhhhhhhhh-ccccccccccc-ccccc
Confidence 457889999999999999984 55799999997 44443
No 169
>KOG4269 consensus Rac GTPase-activating protein BCR/ABR [Signal transduction mechanisms]
Probab=64.32 E-value=3.4 Score=44.12 Aligned_cols=65 Identities=23% Similarity=0.296 Sum_probs=45.2
Q ss_pred ccEEEEEEEEecCCCCCCCCCCcceEEEEEEcC-----cceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEe
Q 019724 3 SRALDITVVSASDLKTAGMFSKMNVYAVVTIFG-----ESQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIR 77 (336)
Q Consensus 3 ~g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~-----~~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~ 77 (336)
.|.|++.+.+|..|+.. .+.||...+.. .+-+|+++++ +..|.||++|+++|... ..+.|+.+
T Consensus 758 ygflh~~vhsat~lkqs-----~~lY~Td~v~e~~~~~s~~st~~iad-T~~~~~npe~hv~~~~s------qS~r~~~~ 825 (1112)
T KOG4269|consen 758 YGFLHVIVHSATGLKQS-----RNLYCTDEVDEFGYFVSKASTRVIAD-TAEPQWNPEKHVPVIES------QSSRLEKT 825 (1112)
T ss_pred ccceeeeeccccccccc-----cceeeehhhhhhccccccccceeeec-ccCCCCChhcccchhhc------cccchhhh
Confidence 46788888999887632 46677766543 3378888765 79999999999887543 34445554
Q ss_pred ec
Q 019724 78 ST 79 (336)
Q Consensus 78 d~ 79 (336)
++
T Consensus 826 ek 827 (1112)
T KOG4269|consen 826 EK 827 (1112)
T ss_pred cc
Confidence 43
No 170
>KOG0904 consensus Phosphatidylinositol 3-kinase catalytic subunit (p110) [Signal transduction mechanisms]
Probab=64.02 E-value=17 Score=39.19 Aligned_cols=71 Identities=20% Similarity=0.304 Sum_probs=39.4
Q ss_pred cEEEEEEEEecCCCCCCCCCCcc--eEEEEEEcC--cc-e---EEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEE
Q 019724 4 RALDITVVSASDLKTAGMFSKMN--VYAVVTIFG--ES-Q---TTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYS 75 (336)
Q Consensus 4 g~L~V~vi~Ak~L~~~d~~g~~d--PYv~v~l~~--~~-~---kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~ 75 (336)
+.++|+++++.++. +..+.| .+|++.+-. +. + +|.. +....++.||+.+.|+|.-.++ .+...|+|.
T Consensus 343 ~~frI~l~~is~~n---~~~t~~~kV~V~~~lyhG~e~Lc~~~sTs~-v~~~~~~~Wn~~leFDI~i~DL-Pr~ArLc~~ 417 (1076)
T KOG0904|consen 343 RPFRIKLVGISKVN---LPETVDLKVFVEAGLYHGTEVLCKTRSTSE-VPGCSFPLWNEWLEFDIYIKDL-PRMARLCLA 417 (1076)
T ss_pred CceEEEEeeccccC---CCcccceEEEEEEEEEECCeehhcccccCC-CCCccchhccceeEeeeecCCC-Chhhhheee
Confidence 45778888876543 223334 455544432 22 2 2222 2335789999999998754321 223456777
Q ss_pred Eeec
Q 019724 76 IRST 79 (336)
Q Consensus 76 V~d~ 79 (336)
||.-
T Consensus 418 i~~v 421 (1076)
T KOG0904|consen 418 IYAV 421 (1076)
T ss_pred eeEe
Confidence 7653
No 171
>COG4395 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=61.82 E-value=6.2 Score=36.85 Aligned_cols=24 Identities=29% Similarity=0.535 Sum_probs=12.9
Q ss_pred CCCCCchhhHHHHHHHHHHHHHHHH
Q 019724 285 MAAGLGLGMGAGLLGGLAGGLTLAA 309 (336)
Q Consensus 285 ~~~~~~~~~~~g~~~g~~~g~~~~~ 309 (336)
..+||+.||++||+.| |++++++.
T Consensus 28 ~~~~~~g~l~ggl~~g-l~~~~~~~ 51 (281)
T COG4395 28 FFSGMLGGLAGGLLMG-LSGMFFGG 51 (281)
T ss_pred hhhhhhhHHHHHHHHh-HHHHHHHH
Confidence 3555555666666666 44444433
No 172
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=58.18 E-value=9.1 Score=31.46 Aligned_cols=19 Identities=26% Similarity=0.191 Sum_probs=15.3
Q ss_pred hhHHHHHHHHHHHHHHHHh
Q 019724 292 GMGAGLLGGLAGGLTLAAA 310 (336)
Q Consensus 292 ~~~~g~~~g~~~g~~~~~~ 310 (336)
..++||+.|+++|+||+-.
T Consensus 10 ~a~igLvvGi~IG~li~Rl 28 (138)
T COG3105 10 YALIGLVVGIIIGALIARL 28 (138)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3678899999999998753
No 173
>PF10409 PTEN_C2: C2 domain of PTEN tumour-suppressor protein; InterPro: IPR014020 Tensins constitute an eukaryotic family of lipid phosphatases that are defined by the presence of two adjacent domains: a lipid phosphatase domain and a C2-like domain. The tensin-type C2 domain has a structure similar to the classical C2 domain (see IPR000008 from INTERPRO) that mediates the Ca2+-dependent membrane recruitment of several signalling proteins. However the tensin-type C2 domain lacks two of the three conserved loops that bind Ca2+, and in this respect it is similar to the C2 domains of PKC-type [, ]. The tensin-type C2 domain can bind phopholipid membranes in a Ca2+ independent manner []. In the tumour suppressor protein PTEN, the best characterised member of the family, the lipid phosphatase domain was shown to specifically dephosphorylate the D3 position of the inositol ring of the lipid second messenger, phosphatydilinositol-3-4-5-triphosphate (PIP3). The lipid phosphatase domain contains the signature motif HCXXGXXR present in the active sites of protein tyrosine phosphatases (PTPs) and dual specificity phosphatases (DSPs). Furthermore, two invariant lysines are found only in the tensin-type phosphatase motif (HCKXGKXR) and are suspected to interact with the phosphate group at position D1 and D5 of the inositol ring [, ]. The C2 domain is found at the C terminus of the tumour suppressor protein PTEN (phosphatidyl-inositol triphosphate phosphatase). This domain may include a CBR3 loop, indicating a central role in membrane binding. This domain associates across an extensive interface with the N-terminal phosphatase domain DSPc suggesting that the C2 domain productively positions the catalytic part of the protein on the membrane. The crystal structure of the PTEN tumour suppressor has been solved []. The lipid phosphatase domain has a structure similar to the dual specificity phosphatase (see IPR000387 from INTERPRO). However, PTEN has a larger active site pocket that could be important to accommodate PI(3,4,5)P3. Proteins known to contain a phosphatase and a C2 tensin-type domain are listed below: Tensin, a focal-adhesion molecule that binds to actin filaments. It may be involved in cell migration, cartilage development and in linking signal transduction pathways to the cytoskeleton. Phosphatase and tensin homologue deleted on chromosome 10 protein (PTEN). It antagonizes PI 3-kinase signalling by dephosphorylating the 3-position of the inositol ring of PI(3,4,5)P3 and thus inactivates downstream signalling. It plays major roles both during development and in the adult to control cell size, growth, and survival. Auxilin. It binds clathrin heavy chain and promotes its assembly into regular cages. Cyclin G-associated kinase or auxilin-2. It is a potential regulator of clathrin-mediated membrane trafficking. ; GO: 0005515 protein binding; PDB: 3N0A_A 1D5R_A 3V0D_B 3V0H_B 3V0G_A 3V0F_B 3V0J_A 3V0I_A 3AWE_B 3AWG_C ....
Probab=57.07 E-value=1e+02 Score=24.89 Aligned_cols=90 Identities=7% Similarity=0.007 Sum_probs=49.6
Q ss_pred cEEEEEEEEecCCCCCCCCCCcceEEEEEEcCcce-EEEEeeCCCCCCeee---eEEEEEecchhhhcCCcEEEEEEeec
Q 019724 4 RALDITVVSASDLKTAGMFSKMNVYAVVTIFGESQ-TTSVARDCGVRPTWN---HQMRFNIDEAAAMQNNLTIVYSIRST 79 (336)
Q Consensus 4 g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~~~-kTkv~~~~t~nP~Wn---E~f~F~v~~~~~~~~~~~L~v~V~d~ 79 (336)
..|.|+-+.-..++..+..+.++||++|.-..... .|.. . .+-..+ +.+.|.+..... -...+.|++|+.
T Consensus 4 ~~l~L~~I~l~~iP~f~~~~gc~p~i~I~~~~~~v~~~~~-~---~~~~~~~~~~~~~~~~~~~~~--l~GDV~i~~~~~ 77 (134)
T PF10409_consen 4 RPLFLKSIILHGIPNFNSGGGCRPYIEIYNGGKKVFSTSK-S---YEDPKSYEQDSVIIELPKNLP--LRGDVLIKFYHK 77 (134)
T ss_dssp -EEEEEEEEEES-TTSTTSSCCTEEEEEEETTEEEEETCC-T---CCCCCEEETTCEEEEEEEEEE--EESEEEEEEEEC
T ss_pred eeEEEEEEEEECCCccCCCCCEEEEEEEECCCccEEEecc-c---eeccccccceeEEEEeCCCCe--EeCCEEEEEEeC
Confidence 45666666667777665566789999999776553 2222 1 111111 223343332110 024578888887
Q ss_pred CC-CCCCcccEEEEEeceeee
Q 019724 80 GG-CFGNSDLGEVFVPVKEML 99 (336)
Q Consensus 80 d~-~~~d~~LG~~~v~L~~l~ 99 (336)
.. ...++.+.++++...-+.
T Consensus 78 ~~~~~~~~~~f~~~FnT~Fi~ 98 (134)
T PF10409_consen 78 RSSSMSKEKMFRFWFNTGFIE 98 (134)
T ss_dssp ETTECCCEEEEEEEEEGGGSB
T ss_pred CCcccccCeEEEEEEeeeeee
Confidence 32 335677888887765554
No 174
>cd05701 S1_Rrp5_repeat_hs10 S1_Rrp5_repeat_hs10: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 10 (hs10). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=56.10 E-value=17 Score=26.19 Aligned_cols=47 Identities=13% Similarity=0.310 Sum_probs=32.2
Q ss_pred ceEEEEEEcCcceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeec
Q 019724 26 NVYAVVTIFGESQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRST 79 (336)
Q Consensus 26 dPYv~v~l~~~~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~ 79 (336)
.-|++|+|.....-|-+ ...+..|.+|+|+-.+... ..+|.++|.+-
T Consensus 13 kdfAvvSL~~t~~L~a~----p~~sHLNdtfrf~seklkv---G~~l~v~lk~~ 59 (69)
T cd05701 13 KDFAIVSLATTGDLAAF----PTRSHLNDTFRFDSEKLSV---GQCLDVTLKDP 59 (69)
T ss_pred hceEEEEeeccccEEEE----Echhhccccccccceeeec---cceEEEEEecC
Confidence 34888998877655544 2456778888887655442 46788888775
No 175
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=54.81 E-value=10 Score=27.92 Aligned_cols=19 Identities=47% Similarity=0.653 Sum_probs=12.9
Q ss_pred hhhHHHHHHHHHHHHHHHH
Q 019724 291 LGMGAGLLGGLAGGLTLAA 309 (336)
Q Consensus 291 ~~~~~g~~~g~~~g~~~~~ 309 (336)
+|+.+|++.|+++|+|++-
T Consensus 3 ~g~l~Ga~~Ga~~glL~aP 21 (74)
T PF12732_consen 3 LGFLAGAAAGAAAGLLFAP 21 (74)
T ss_pred HHHHHHHHHHHHHHHHhCC
Confidence 4666777777777777653
No 176
>KOG0906 consensus Phosphatidylinositol 3-kinase VPS34, involved in signal transduction [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=50.58 E-value=14 Score=38.51 Aligned_cols=46 Identities=15% Similarity=0.210 Sum_probs=34.0
Q ss_pred CeeeeEEEEEecchhhhcCCcEEEEEEeecCCCCCCcccEEEEEece
Q 019724 50 PTWNHQMRFNIDEAAAMQNNLTIVYSIRSTGGCFGNSDLGEVFVPVK 96 (336)
Q Consensus 50 P~WnE~f~F~v~~~~~~~~~~~L~v~V~d~d~~~~d~~LG~~~v~L~ 96 (336)
-.|||=+++.+...++ ..+..|.|++||.+......|+|..++.|-
T Consensus 77 ~~wnewLtlpvky~dL-t~~a~l~itiW~~n~~~~~~~vg~~t~~lf 122 (843)
T KOG0906|consen 77 INWNEWLTLPVKYSDL-TRNAQLAITIWDVNGPKKAVFVGGTTVSLF 122 (843)
T ss_pred cchhhhhccccccccc-cccceEEEEEEecCCCceeeeccceEEEee
Confidence 4599988888765443 246789999999866667778888777653
No 177
>PRK10404 hypothetical protein; Provisional
Probab=49.89 E-value=15 Score=29.01 Aligned_cols=16 Identities=50% Similarity=0.669 Sum_probs=9.7
Q ss_pred hHHHHHHHHHHHHHHH
Q 019724 293 MGAGLLGGLAGGLTLA 308 (336)
Q Consensus 293 ~~~g~~~g~~~g~~~~ 308 (336)
+|++++.|+|+|+||+
T Consensus 84 vGiaagvGlllG~Ll~ 99 (101)
T PRK10404 84 IGVGAAVGLVLGLLLA 99 (101)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 4444556777777764
No 178
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=46.20 E-value=19 Score=40.08 Aligned_cols=95 Identities=14% Similarity=0.182 Sum_probs=56.6
Q ss_pred cEEEEEEEEecCCCCCCCCCCcceEEEEEEcCcc-------eEEEEeeCCCCCC--eeeeEEEEEecchhhhcCCcEEEE
Q 019724 4 RALDITVVSASDLKTAGMFSKMNVYAVVTIFGES-------QTTSVARDCGVRP--TWNHQMRFNIDEAAAMQNNLTIVY 74 (336)
Q Consensus 4 g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~~-------~kTkv~~~~t~nP--~WnE~f~F~v~~~~~~~~~~~L~v 74 (336)
.-|.++|..+.++...-...-.|-|..++|.... +.-+++..+..=| .|++-+.|.+. .+--.+...|+|
T Consensus 635 ~~L~ftv~a~H~ip~~W~s~yedfyl~~~l~hg~k~l~~p~~t~k~~~~~~~F~ri~~d~~i~Fp~~-i~~lPREt~L~~ 713 (1639)
T KOG0905|consen 635 DFLQFTVYAAHRIPENWVSQYEDFYLSCSLSHGTKDLDKPNQTPKTITSKHFFPRIPWDLYIKFPRQ-ICQLPRETRLTV 713 (1639)
T ss_pred cceeeeeecccCCChHhhhhhhhheEEEeeecCceeccccccccccccccccccccchhhhhcchHH-HhhCChhheEEE
Confidence 3578888888888765544556788888776532 2222323333334 58888888765 221223467888
Q ss_pred EEeecCCCC--C----------CcccEEEEEeceeee
Q 019724 75 SIRSTGGCF--G----------NSDLGEVFVPVKEML 99 (336)
Q Consensus 75 ~V~d~d~~~--~----------d~~LG~~~v~L~~l~ 99 (336)
.++-..+.. . -..||.|.++|-+..
T Consensus 714 tL~G~~~~s~gan~d~n~err~~~~LGw~slpLfdf~ 750 (1639)
T KOG0905|consen 714 TLFGIVRASAGANADQNKERRVPEALGWCSLPLFDFR 750 (1639)
T ss_pred EEeeeecCCCCCCchhcccccchhhhheeeccccchh
Confidence 888642222 1 145888888876644
No 179
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=45.49 E-value=19 Score=28.45 Aligned_cols=16 Identities=38% Similarity=0.470 Sum_probs=9.1
Q ss_pred hHHHHHHHHHHHHHHH
Q 019724 293 MGAGLLGGLAGGLTLA 308 (336)
Q Consensus 293 ~~~g~~~g~~~g~~~~ 308 (336)
+|.+.+.|+|+|+||+
T Consensus 87 VGvaAaVGlllGlLls 102 (104)
T COG4575 87 VGVAAAVGLLLGLLLS 102 (104)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3444445666666664
No 180
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=45.21 E-value=20 Score=27.57 Aligned_cols=17 Identities=29% Similarity=0.298 Sum_probs=11.5
Q ss_pred hhHHHHHHHHHHHHHHH
Q 019724 292 GMGAGLLGGLAGGLTLA 308 (336)
Q Consensus 292 ~~~~g~~~g~~~g~~~~ 308 (336)
.++++++.|+|+|+||+
T Consensus 76 svgiAagvG~llG~Ll~ 92 (94)
T PF05957_consen 76 SVGIAAGVGFLLGLLLR 92 (94)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 35556667788888775
No 181
>COG3416 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=43.52 E-value=22 Score=31.78 Aligned_cols=25 Identities=28% Similarity=0.263 Sum_probs=18.9
Q ss_pred CCchhhHHHHHHHHHHHHHHHHhcC
Q 019724 288 GLGLGMGAGLLGGLAGGLTLAAAGG 312 (336)
Q Consensus 288 ~~~~~~~~g~~~g~~~g~~~~~~~~ 312 (336)
|..+.-++||+||||.+.+|..+++
T Consensus 140 G~AlqTAAGVAGGMlL~n~L~~mF~ 164 (233)
T COG3416 140 GGALQTAAGVAGGMLLANGLEGMFR 164 (233)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHhc
Confidence 4455577888889888888888744
No 182
>KOG4027 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.28 E-value=2.3e+02 Score=24.36 Aligned_cols=47 Identities=9% Similarity=0.040 Sum_probs=28.3
Q ss_pred CCeeeeEEEEEecchhhhcCCcEEEEEEeecCCCCCCcccEEEEEece
Q 019724 49 RPTWNHQMRFNIDEAAAMQNNLTIVYSIRSTGGCFGNSDLGEVFVPVK 96 (336)
Q Consensus 49 nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~d~~~~d~~LG~~~v~L~ 96 (336)
--+||--|...+..... -.=..|.|.||.+|...+|.++|-..|.|-
T Consensus 63 ~iv~n~Pievt~KstsP-ygWPqivl~vfg~d~~G~d~v~GYg~~hiP 109 (187)
T KOG4027|consen 63 QIVINLPIEVTLKSTSP-YGWPQIVLNVFGKDHSGKDCVTGYGMLHIP 109 (187)
T ss_pred ceEEecceEEEeccCCC-CCCceEEEEEecCCcCCcceeeeeeeEecC
Confidence 34677666555543211 112458899999966557777777666543
No 183
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.25 E-value=30 Score=25.34 Aligned_cols=18 Identities=39% Similarity=0.556 Sum_probs=13.1
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 019724 292 GMGAGLLGGLAGGLTLAA 309 (336)
Q Consensus 292 ~~~~g~~~g~~~g~~~~~ 309 (336)
.+.+.|++|+++|..|+-
T Consensus 9 ~ivl~ll~G~~~G~fiar 26 (71)
T COG3763 9 LIVLALLAGLIGGFFIAR 26 (71)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455677888888887764
No 184
>PF15084 DUF4550: Domain of unknown function (DUF4550)
Probab=40.44 E-value=63 Score=25.41 Aligned_cols=30 Identities=20% Similarity=0.326 Sum_probs=23.1
Q ss_pred CeeeeEEEEEecchhh-hcCCcEEEEEEeec
Q 019724 50 PTWNHQMRFNIDEAAA-MQNNLTIVYSIRST 79 (336)
Q Consensus 50 P~WnE~f~F~v~~~~~-~~~~~~L~v~V~d~ 79 (336)
..|.++|.+.|..+.+ ......|+|.|||.
T Consensus 52 v~W~~~~~i~vt~e~l~kl~~h~i~~kiwDt 82 (99)
T PF15084_consen 52 VSWTHTFNINVTKELLKKLYFHKITLKIWDT 82 (99)
T ss_pred EEEEEEEEeccCHHHHHHHHcCeEEEEEEcc
Confidence 6789999999877543 23467899999997
No 185
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=39.24 E-value=31 Score=24.86 Aligned_cols=18 Identities=22% Similarity=0.157 Sum_probs=12.9
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 019724 292 GMGAGLLGGLAGGLTLAA 309 (336)
Q Consensus 292 ~~~~g~~~g~~~g~~~~~ 309 (336)
.+.++|++|+++|+.++-
T Consensus 2 ~iilali~G~~~Gff~ar 19 (64)
T PF03672_consen 2 LIILALIVGAVIGFFIAR 19 (64)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 345677888888877754
No 186
>PRK10132 hypothetical protein; Provisional
Probab=38.37 E-value=29 Score=27.76 Aligned_cols=16 Identities=25% Similarity=0.322 Sum_probs=9.5
Q ss_pred hHHHHHHHHHHHHHHH
Q 019724 293 MGAGLLGGLAGGLTLA 308 (336)
Q Consensus 293 ~~~g~~~g~~~g~~~~ 308 (336)
+|++++.|+|+|+||+
T Consensus 90 vgiaagvG~llG~Ll~ 105 (108)
T PRK10132 90 VGTAAAVGIFIGALLS 105 (108)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 4444555677777764
No 187
>COG4395 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.29 E-value=25 Score=32.89 Aligned_cols=13 Identities=46% Similarity=0.713 Sum_probs=7.1
Q ss_pred CCCCCCchhhHHH
Q 019724 284 GMAAGLGLGMGAG 296 (336)
Q Consensus 284 ~~~~~~~~~~~~g 296 (336)
++.+++..|+++|
T Consensus 31 ~~~g~l~ggl~~g 43 (281)
T COG4395 31 GMLGGLAGGLLMG 43 (281)
T ss_pred hhhhHHHHHHHHh
Confidence 3455555556666
No 188
>PF01060 DUF290: Transthyretin-like family; InterPro: IPR001534 This new apparently nematode-specific protein family has been called family 2 []. The proteins show weak similarity to transthyretin (formerly called prealbumin) which transports thyroid hormones. The specific function of this protein is unknown.; GO: 0005615 extracellular space
Probab=35.71 E-value=50 Score=24.53 Aligned_cols=25 Identities=8% Similarity=-0.106 Sum_probs=19.2
Q ss_pred cEEEEEEeecCCCCCCcccEEEEEe
Q 019724 70 LTIVYSIRSTGGCFGNSDLGEVFVP 94 (336)
Q Consensus 70 ~~L~v~V~d~d~~~~d~~LG~~~v~ 94 (336)
...+|+||++|....|++|+++...
T Consensus 12 ~~~~V~L~e~d~~~~Ddll~~~~Td 36 (80)
T PF01060_consen 12 KNVKVKLWEDDYFDPDDLLDETKTD 36 (80)
T ss_pred CCCEEEEEECCCCCCCceeEEEEEC
Confidence 4467999999765689999887664
No 189
>PF09849 DUF2076: Uncharacterized protein conserved in bacteria (DUF2076); InterPro: IPR018648 This family of hypothetical prokaryotic proteins has no known function but includes putative perimplasmic ligand-binding sensor proteins.
Probab=34.30 E-value=36 Score=31.37 Aligned_cols=23 Identities=39% Similarity=0.497 Sum_probs=13.3
Q ss_pred hhhHHHHHHHHHHHHHHHHhcCC
Q 019724 291 LGMGAGLLGGLAGGLTLAAAGGG 313 (336)
Q Consensus 291 ~~~~~g~~~g~~~g~~~~~~~~~ 313 (336)
|+-++..++|+.||+||++++..
T Consensus 138 Lg~A~~TAAGVAGG~lL~n~i~~ 160 (247)
T PF09849_consen 138 LGGAAQTAAGVAGGMLLANGIES 160 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455556666666666666544
No 190
>PRK11677 hypothetical protein; Provisional
Probab=33.85 E-value=39 Score=28.12 Aligned_cols=18 Identities=22% Similarity=0.148 Sum_probs=12.5
Q ss_pred hHHHHHHHHHHHHHHHHh
Q 019724 293 MGAGLLGGLAGGLTLAAA 310 (336)
Q Consensus 293 ~~~g~~~g~~~g~~~~~~ 310 (336)
+.+||+.|+|+|++|+-.
T Consensus 6 a~i~livG~iiG~~~~R~ 23 (134)
T PRK11677 6 ALIGLVVGIIIGAVAMRF 23 (134)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 446777788888777653
No 191
>cd05137 RasGAP_CLA2_BUD2 CLA2/BUD2 functions as a GTPase-activating protein (GAP) for BUD1/RSR1 and is necessary for proper bud-site selection in yeast. BUD2 has sequence similarity to the catalytic domain of RasGAPs, and stimulates the hydrolysis of BUD1-GTP to BUD1-GDP. Elimination of Bud2p activity by mutation causes a random budding pattern with no growth defect. Overproduction of Bud2p also alters the budding pattern.
Probab=33.42 E-value=45 Score=32.93 Aligned_cols=44 Identities=14% Similarity=0.198 Sum_probs=28.4
Q ss_pred ccEEEEEeceeeeccCCCCCCCCeeeeeeCCCCCc--ceEEEEEEEEccc
Q 019724 87 DLGEVFVPVKEMLLRSNGDDDKPMSYNITTPGGRA--KGVLNVSYKFGPS 134 (336)
Q Consensus 87 ~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~~~g~~--~G~L~lsl~~~~~ 134 (336)
+||++.|++..+++++.. ...||++.+..... .|.| |++++.+.
T Consensus 1 ~~G~v~i~~~~~~~~~~~---~e~w~~i~~~~~~~~~~~~l-lk~~~~~~ 46 (395)
T cd05137 1 LVGRIDITLEMILDRGLD---KETWLPIFDVDNKSVGEGLI-IKVSSEEN 46 (395)
T ss_pred CeeEEEeehhhhccCCCC---ceeeeccccCCCCCcCcceE-EEEEeeec
Confidence 489999999997763322 33678887643333 3555 67777654
No 192
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=32.60 E-value=38 Score=27.78 Aligned_cols=16 Identities=31% Similarity=0.399 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 019724 294 GAGLLGGLAGGLTLAA 309 (336)
Q Consensus 294 ~~g~~~g~~~g~~~~~ 309 (336)
.+||+.|+|+|.+++-
T Consensus 3 ~i~lvvG~iiG~~~~r 18 (128)
T PF06295_consen 3 IIGLVVGLIIGFLIGR 18 (128)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4566667777766654
No 193
>PF04573 SPC22: Signal peptidase subunit; InterPro: IPR007653 Translocation of polypeptide chains across the endoplasmic reticulum membrane is triggered by signal sequences. During translocation of the nascent chain through the membrane, the signal sequence of most secretory and membrane proteins is cleaved off. Cleavage occurs by the signal peptidase complex (SPC), which consists of four subunits in yeast and five in mammals. This family is is described as similar to microsomal signal peptidase 23 kDa subunit. Found in eukaryotes [, ].; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=26.83 E-value=4.2e+02 Score=22.97 Aligned_cols=22 Identities=14% Similarity=0.365 Sum_probs=11.4
Q ss_pred eeeeCCCCCcce--EEEEEEEEcc
Q 019724 112 YNITTPGGRAKG--VLNVSYKFGP 133 (336)
Q Consensus 112 ~~l~~~~g~~~G--~L~lsl~~~~ 133 (336)
|.+.+.....+| .|.|+|+|.-
T Consensus 127 Y~~~d~~~~l~~~~~v~l~l~wnv 150 (175)
T PF04573_consen 127 YPFWDDGNGLRGNKNVTLTLHWNV 150 (175)
T ss_pred eeeECCCCcccCCceEEEEEEEEe
Confidence 555553333333 4666666653
No 194
>PRK00523 hypothetical protein; Provisional
Probab=26.62 E-value=75 Score=23.46 Aligned_cols=14 Identities=21% Similarity=0.071 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHH
Q 019724 296 GLLGGLAGGLTLAA 309 (336)
Q Consensus 296 g~~~g~~~g~~~~~ 309 (336)
+|++|+++|+.++-
T Consensus 14 ~li~G~~~Gffiar 27 (72)
T PRK00523 14 LLIVGGIIGYFVSK 27 (72)
T ss_pred HHHHHHHHHHHHHH
Confidence 36667777776654
No 195
>PF05818 TraT: Enterobacterial TraT complement resistance protein; InterPro: IPR008874 The traT gene is one of the F factor transfer genes and encodes an outer membrane protein which is involved in interactions between Escherichia coli and its surroundings []. The protein plays a role in preventing unproductive conjugation between bacteria carrying like plasmids.; GO: 0046999 regulation of conjugation, 0019867 outer membrane
Probab=24.71 E-value=58 Score=29.35 Aligned_cols=11 Identities=27% Similarity=0.404 Sum_probs=8.1
Q ss_pred CcEEEEEEeec
Q 019724 69 NLTIVYSIRST 79 (336)
Q Consensus 69 ~~~L~v~V~d~ 79 (336)
.+++.|+|.+-
T Consensus 21 ~rtVyv~vrNT 31 (215)
T PF05818_consen 21 QRTVYVQVRNT 31 (215)
T ss_pred cceEEEEEecC
Confidence 47788888765
No 196
>PRK01844 hypothetical protein; Provisional
Probab=24.48 E-value=77 Score=23.41 Aligned_cols=15 Identities=33% Similarity=0.541 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHH
Q 019724 295 AGLLGGLAGGLTLAA 309 (336)
Q Consensus 295 ~g~~~g~~~g~~~~~ 309 (336)
++|++|+++|+.++-
T Consensus 12 ~~li~G~~~Gff~ar 26 (72)
T PRK01844 12 VALVAGVALGFFIAR 26 (72)
T ss_pred HHHHHHHHHHHHHHH
Confidence 557778888877764
No 197
>COG4980 GvpP Gas vesicle protein [General function prediction only]
Probab=23.63 E-value=59 Score=26.33 Aligned_cols=22 Identities=27% Similarity=0.309 Sum_probs=13.0
Q ss_pred CCchhhHHHHHHHHHHHHHHHH
Q 019724 288 GLGLGMGAGLLGGLAGGLTLAA 309 (336)
Q Consensus 288 ~~~~~~~~g~~~g~~~g~~~~~ 309 (336)
.+-.|+.+|.+.|++.++|++.
T Consensus 6 ~~l~G~liGgiiGa~aaLL~AP 27 (115)
T COG4980 6 DFLFGILIGGIIGAAAALLFAP 27 (115)
T ss_pred hHHHHHHHHHHHHHHHHHHhCC
Confidence 3445566666666666666654
No 198
>PF13441 Gly-zipper_YMGG: YMGG-like Gly-zipper
Probab=23.30 E-value=74 Score=21.26 Aligned_cols=17 Identities=24% Similarity=0.382 Sum_probs=9.9
Q ss_pred hhHHHHHHHHHHHHHHH
Q 019724 292 GMGAGLLGGLAGGLTLA 308 (336)
Q Consensus 292 ~~~~g~~~g~~~g~~~~ 308 (336)
+.++|.+.|+++|.++.
T Consensus 6 GA~iGA~~GA~iG~~~g 22 (45)
T PF13441_consen 6 GAAIGAAAGAVIGAIIG 22 (45)
T ss_pred HHHHHHHHHHHHHHhhC
Confidence 44555566666666555
No 199
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=22.61 E-value=2.4e+02 Score=31.37 Aligned_cols=75 Identities=13% Similarity=0.161 Sum_probs=38.0
Q ss_pred EEEEEEEEecCCCCCCCCCCcceEEEEEEcCcceEE---------EEeeCCCCCCeeeeE--EEEEecchhhh-cCCcEE
Q 019724 5 ALDITVVSASDLKTAGMFSKMNVYAVVTIFGESQTT---------SVARDCGVRPTWNHQ--MRFNIDEAAAM-QNNLTI 72 (336)
Q Consensus 5 ~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~~~kT---------kv~~~~t~nP~WnE~--f~F~v~~~~~~-~~~~~L 72 (336)
+.+|+|.+|.+|+..- ..=.||..++-+..-.| .+.+++..-=+|+.+ |.+.|.++.++ ..+..|
T Consensus 842 tCrVkIk~AtGLP~~L---SnFVFCqYtFw~~~E~~vvaP~vd~ss~~~~~~~~v~FeH~~df~V~vtEeFlE~~~dgAL 918 (1714)
T KOG0241|consen 842 TCRVKIKEATGLPLNL---SNFVFCQYTFWDQQESTVVAPVVDPSSQSKDAQYTVIFEHCKDFVVNVTEEFLEHISDGAL 918 (1714)
T ss_pred EEEEEEeeccCCcccc---cceEEEEeeecccccceeeeeccccccccCCCCeEEEeecccceEEeehHHHHHHhhcCce
Confidence 5678889999987432 11246665554432111 111111112233333 44445544332 134679
Q ss_pred EEEEeecCCCC
Q 019724 73 VYSIRSTGGCF 83 (336)
Q Consensus 73 ~v~V~d~d~~~ 83 (336)
.|+||-+ +..
T Consensus 919 aIEVwGH-r~~ 928 (1714)
T KOG0241|consen 919 AIEVWGH-RIA 928 (1714)
T ss_pred EEEEeec-ccc
Confidence 9999987 554
No 200
>PRK13731 conjugal transfer surface exclusion protein TraT; Provisional
Probab=22.57 E-value=71 Score=29.26 Aligned_cols=10 Identities=30% Similarity=0.461 Sum_probs=7.2
Q ss_pred cEEEEEEeec
Q 019724 70 LTIVYSIRST 79 (336)
Q Consensus 70 ~~L~v~V~d~ 79 (336)
+++-|+|.+-
T Consensus 51 ktVyv~vrNT 60 (243)
T PRK13731 51 RTVFLQIKNT 60 (243)
T ss_pred ceEEEEEeeC
Confidence 6777777765
No 201
>PF05660 DUF807: Coxiella burnetii protein of unknown function (DUF807); InterPro: IPR008525 This family consists of several proteins of unknown function from Coxiella burnetii (the causative agent of a zoonotic disease called Q fever).
Probab=21.58 E-value=2.6e+02 Score=22.89 Aligned_cols=30 Identities=13% Similarity=0.303 Sum_probs=21.1
Q ss_pred CccEEEEEEEEecCCCCCCCCCCcceEEEEEEcCc
Q 019724 2 GSRALDITVVSASDLKTAGMFSKMNVYAVVTIFGE 36 (336)
Q Consensus 2 ~~g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~ 36 (336)
+.|+.+|+++++|++... .-+.|.+++.++
T Consensus 38 aTGeytItfls~r~vqet-----Qp~~vhi~v~d~ 67 (142)
T PF05660_consen 38 ATGEYTITFLSARNVQET-----QPAVVHISVMDD 67 (142)
T ss_pred ccCceEEEEEeccchhhc-----CCceEEEEEEec
Confidence 567888999999988743 345666776543
No 202
>KOG3416 consensus Predicted nucleic acid binding protein [General function prediction only]
Probab=21.11 E-value=2.6e+02 Score=23.03 Aligned_cols=21 Identities=10% Similarity=0.088 Sum_probs=15.6
Q ss_pred eEEEEEecchhhhcCCcEEEEEEeec
Q 019724 54 HQMRFNIDEAAAMQNNLTIVYSIRST 79 (336)
Q Consensus 54 E~f~F~v~~~~~~~~~~~L~v~V~d~ 79 (336)
|...+.|.+.. ..|++.|||+
T Consensus 37 ~v~~~kVaD~T-----gsI~isvW~e 57 (134)
T KOG3416|consen 37 EVRSCKVADET-----GSINISVWDE 57 (134)
T ss_pred EEEEEEEeccc-----ceEEEEEecC
Confidence 45566776553 7899999995
No 203
>PRK04081 hypothetical protein; Provisional
Probab=20.80 E-value=91 Score=27.67 Aligned_cols=25 Identities=24% Similarity=0.314 Sum_probs=14.8
Q ss_pred CCCCchh-hHHHHHHHHHHHHHHHHh
Q 019724 286 AAGLGLG-MGAGLLGGLAGGLTLAAA 310 (336)
Q Consensus 286 ~~~~~~~-~~~g~~~g~~~g~~~~~~ 310 (336)
++||+|| +.+.-++|+|+|-.|++.
T Consensus 118 s~G~gLg~~lLasaAGaiLGswIGnk 143 (207)
T PRK04081 118 SGGMGLGGTILASAAGAILGSWIGNK 143 (207)
T ss_pred cccccHHHHHHHHHHHHHHhhhhhHh
Confidence 3455554 445556677777667664
No 204
>PF14472 DUF4429: Domain of unknown function (DUF4429)
Probab=20.37 E-value=1.8e+02 Score=22.32 Aligned_cols=15 Identities=27% Similarity=0.410 Sum_probs=12.5
Q ss_pred cccEEEEEeceeeec
Q 019724 86 SDLGEVFVPVKEMLL 100 (336)
Q Consensus 86 ~~LG~~~v~L~~l~~ 100 (336)
.-+|+.+|+|++|..
T Consensus 22 ~~~G~~~ipl~~i~g 36 (94)
T PF14472_consen 22 RALGEKTIPLSAISG 36 (94)
T ss_pred ccCCCEEEEHHHcce
Confidence 348999999999875
No 205
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=20.22 E-value=34 Score=24.62 Aligned_cols=13 Identities=31% Similarity=0.470 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHH
Q 019724 295 AGLLGGLAGGLTL 307 (336)
Q Consensus 295 ~g~~~g~~~g~~~ 307 (336)
+|+++|++.|+++
T Consensus 12 aavIaG~Vvgll~ 24 (64)
T PF01034_consen 12 AAVIAGGVVGLLF 24 (64)
T ss_dssp -------------
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444433
Done!