BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019727
(336 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FMM|A Chain A, Dimeric Sec14 Family Homolog 3 From Saccharomyces
Cerevisiae Presents Some Novel Features Of Structure
That Lead To A Surprising "dimer- Monomer" State Change
Induced By Substrate Binding
pdb|4FMM|B Chain B, Dimeric Sec14 Family Homolog 3 From Saccharomyces
Cerevisiae Presents Some Novel Features Of Structure
That Lead To A Surprising "dimer- Monomer" State Change
Induced By Substrate Binding
Length = 360
Score = 104 bits (259), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 68/249 (27%), Positives = 129/249 (51%), Gaps = 25/249 (10%)
Query: 30 IGPIADKYPVLCSDESISRYLRARNWHTKKASKMLVESVKWRLEY--------KPEKIVW 81
+ P+ ++ + E RYLRA W K + ++ WR E+ +KI
Sbjct: 74 LKPLEEEEKAWLTRECFLRYLRATKWVLKDCIDRITMTLAWRREFGISHLGEEHGDKITA 133
Query: 82 EDVAREAETGKLYRANFCDKLGRPVLIMRPGFQNSSSTEGQIKYLVYCMENAIMNLNPDR 141
+ VA E E+GK + + RP+L ++PG QN+ ++ Q+++LV+ +E I + +
Sbjct: 134 DLVAVENESGKQVILGYEND-ARPILYLKPGRQNTKTSHRQVQHLVFMLERVIDFMPAGQ 192
Query: 142 EQMVWLIDFQGW-----TMGSVSVK---VTRETANVLQNHYPERLGLAILYNPPKVFESF 193
+ + LIDF+ + G+ + V +E ++LQ HYPERLG A+L N P + +F
Sbjct: 193 DSLALLIDFKDYPDVPKVPGNSKIPPIGVGKEVLHILQTHYPERLGKALLTNIPWLAWTF 252
Query: 194 WTVVKPFLEPKTYKKVRFAYSNDPQSQKIMEALFDINKLDSSFGGRSRVGFDYEAFGQLM 253
++ PF++P T +K+ F ++P + + + N+LDS +GG + ++++ + +
Sbjct: 253 LKLIHPFIDPLTREKLVF---DEPFVKYVPK-----NELDSLYGGDLKFKYNHDVYWPAL 304
Query: 254 RADDKKKSD 262
++K D
Sbjct: 305 VETAREKRD 313
>pdb|1AUA|A Chain A, Phosphatidylinositol Transfer Protein Sec14p From
Saccharomyces Cerevisiae
Length = 296
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 67/243 (27%), Positives = 108/243 (44%), Gaps = 24/243 (9%)
Query: 19 QQAKINEVRKIIGPIADKYPVLCSDESISRYLRARNWHTKKASKMLVESVKWRLEYKPEK 78
Q+ + E+RK++ + D ++ R+LRAR + + A +M KWR +Y +
Sbjct: 30 QEKALAELRKLLEDAG--FIERLDDSTLLRFLRARKFDVQLAKEMFENCEKWRKDYGTDT 87
Query: 79 IVWEDVAREAE-TGKLYRANF--CDKLGRPVLIMRPGFQN------SSSTEGQIKYLVYC 129
I+ + E K Y + DK GRPV G N +S E +K LV+
Sbjct: 88 ILQDFHYDEKPLIAKFYPQYYHKTDKDGRPVYFEELGAVNLHEMNKVTSEERMLKNLVWE 147
Query: 130 MENAIMNLNPD--------REQMVWLIDFQGWTMGSVS--VKVTRETANVLQNHYPERLG 179
E+ + P E ++D +G ++ S + RE + + QN+YPER+G
Sbjct: 148 YESVVQYRLPACSRAAGHLVETSCTIMDLKGISISSAYSVMSYVREASYISQNYYPERMG 207
Query: 180 LAILYNPPKVFESFWTVVKPFLEPKTYKKVRFAYSNDPQSQKIMEALFDINKLDSSFGGR 239
+ N P F + + + KPFL+P T K+ S+ QK + L FGG+
Sbjct: 208 KFYIINAPFGFSTAFRLFKPFLDPVTVSKIFILGSS---YQKELLKQIPAENLPVKFGGK 264
Query: 240 SRV 242
S V
Sbjct: 265 SEV 267
>pdb|3Q8G|A Chain A, Resurrection Of A Functional Phosphatidylinositol Transfer
Protein From A Pseudo-Sec14 Scaffold By Directed
Evolution
Length = 320
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 67/258 (25%), Positives = 117/258 (45%), Gaps = 33/258 (12%)
Query: 9 GAEKSLSPEEQQAKINEVRKIIGPIADKYPVLCSDESISRYLRARNWHTKKASKMLVESV 68
G +L+ E+++A + + R I+ + Y D ++ R+LRAR + + +M VE+
Sbjct: 30 GTPGNLTKEQEEALL-QFRSIL--LEKNYKERLDDSTLLRFLRARKFDINASVEMFVETE 86
Query: 69 KWRLEYKPEKIVWEDVA--REAE------TGKLYRANF--CDKLGRPVLIMRPGFQN--- 115
+WR EY I+ ED +EAE K+Y + DK GRP+ G N
Sbjct: 87 RWREEYGANTII-EDYENNKEAEDKERIKLAKMYPQYYHHVDKDGRPLYFAELGGINLKK 145
Query: 116 --SSSTEGQIK---------YLVYCMENAIMNLNPDREQMVWLIDFQGWTMGSVS--VKV 162
+TE Q+ + Y + E ++D +G ++ + +
Sbjct: 146 MYKITTEKQMLRNLVKEYELFATYRVPACSRRAGYLIETSCTVLDLKGISLSNAYHVLSY 205
Query: 163 TRETANVLQNHYPERLGLAILYNPPKVFESFWTVVKPFLEPKTYKKVRFAYSNDPQSQKI 222
++ A++ QN+YPER+G + + P F + + +VKPFL+P T K+ S+ +K
Sbjct: 206 IKDVADISQNYYPERMGKFYIIHSPFGFSTMFKMVKPFLDPVTVSKIFILGSS---YKKE 262
Query: 223 MEALFDINKLDSSFGGRS 240
+ I L +GG S
Sbjct: 263 LLKQIPIENLPVKYGGTS 280
>pdb|3B74|A Chain A, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex
With Phosphatidylethanolamine
pdb|3B7N|A Chain A, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex
With Phosphatidylinositol
pdb|3B7Q|A Chain A, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex
With Phosphatidylcholine
pdb|3B7Q|B Chain B, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex
With Phosphatidylcholine
pdb|3B7Z|A Chain A, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex
With Phosphatidylcholine Or Phosphatidylinositol
Length = 320
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 67/258 (25%), Positives = 117/258 (45%), Gaps = 33/258 (12%)
Query: 9 GAEKSLSPEEQQAKINEVRKIIGPIADKYPVLCSDESISRYLRARNWHTKKASKMLVESV 68
G +L+ E+++A + + R I+ + Y D ++ R+LRAR + + +M VE+
Sbjct: 30 GTPGNLTKEQEEALL-QFRSIL--LEKNYKERLDDSTLLRFLRARKFDINASVEMFVETE 86
Query: 69 KWRLEYKPEKIVWEDVA--REAE------TGKLYRANF--CDKLGRPVLIMRPGFQN--- 115
+WR EY I+ ED +EAE K+Y + DK GRP+ G N
Sbjct: 87 RWREEYGANTII-EDYENNKEAEDKERIKLAKMYPQYYHHVDKDGRPLYFEELGGINLKK 145
Query: 116 --SSSTEGQIK---------YLVYCMENAIMNLNPDREQMVWLIDFQGWTMGSVS--VKV 162
+TE Q+ + Y + E ++D +G ++ + +
Sbjct: 146 MYKITTEKQMLRNLVKEYELFATYRVPACSRRAGYLIETSCTVLDLKGISLSNAYHVLSY 205
Query: 163 TRETANVLQNHYPERLGLAILYNPPKVFESFWTVVKPFLEPKTYKKVRFAYSNDPQSQKI 222
++ A++ QN+YPER+G + + P F + + +VKPFL+P T K+ S+ +K
Sbjct: 206 IKDVADISQNYYPERMGKFYIIHSPFGFSTMFKMVKPFLDPVTVSKIFILGSS---YKKE 262
Query: 223 MEALFDINKLDSSFGGRS 240
+ I L +GG S
Sbjct: 263 LLKQIPIENLPVKYGGTS 280
>pdb|3HY5|A Chain A, Crystal Structure Of Cralbp
Length = 316
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 59/205 (28%), Positives = 100/205 (48%), Gaps = 25/205 (12%)
Query: 48 RYLRARNWHTKKASKMLVESVKWRLEYKPEKIVWEDVAREA-----ETGKLYRANFCDKL 102
R++RAR ++ +A ++L V +RL+Y PE +++ ++ EA E G + DK
Sbjct: 97 RFIRARKFNVGRAYELLRGYVNFRLQY-PE--LFDSLSPEAVRCTIEAGYPGVLSSRDKY 153
Query: 103 GRPVLIMRPGFQNSSSTEGQIKYLV--YC--MENAIMNLNPDREQMVWLIDFQGWTM--- 155
GR V++ +N S E ++ YC +E + N + +F+G+TM
Sbjct: 154 GRVVMLF--NIENWQSQEITFDEILQAYCFILEKLLENEETQINGFCIIENFKGFTMQQA 211
Query: 156 GSVSVKVTRETANVLQNHYPERLGLAILYNPPKVFESFWTVVKPFLEPKTYKKVRFAYSN 215
S+ R+ ++LQ+ +P R + P F + + VVKPFL+ K ++V F + +
Sbjct: 212 ASLRTSDLRKMVDMLQDSFPARFKAIHFIHQPWYFTTTYNVVKPFLKSKLLERV-FVHGD 270
Query: 216 DPQS--QKIMEALFDINKLDSSFGG 238
D Q+I D N L S FGG
Sbjct: 271 DLSGFYQEI-----DENILPSDFGG 290
>pdb|1OIP|A Chain A, The Molecular Basis Of Vitamin E Retention: Structure Of
Human Alpha-tocopherol Transfer Protein
pdb|1OIZ|A Chain A, The Molecular Basis Of Vitamin E Retention: Structure Of
Human Alpha-Tocopherol Transfer Protein
pdb|1OIZ|B Chain B, The Molecular Basis Of Vitamin E Retention: Structure Of
Human Alpha-Tocopherol Transfer Protein
Length = 278
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 53/212 (25%), Positives = 97/212 (45%), Gaps = 19/212 (8%)
Query: 38 PVLCSDESISRYLRARNWHTKKASKMLVESVKWRLEYKPEKIVWEDVAREAETGKLYRAN 97
P+ +D + R+LRAR++ A ++L KWR E PE + D+ + G L +A
Sbjct: 44 PLPLTDSFLLRFLRARDFDLDLAWRLLKNYYKWRAEC-PE--ISADLHPRSIIG-LLKAG 99
Query: 98 FC------DKLGRPVLIMRPGFQNSSSTEGQIKYLVYCM--ENAIMNLNPDREQMVWLID 149
+ D G VLI R + + V + E + + R + + D
Sbjct: 100 YHGVLRSRDPTGSKVLIYRIAHWDPKVFTAYDVFRVSLITSELIVQEVETQRNGIKAIFD 159
Query: 150 FQGWTMGS---VSVKVTRETANVLQNHYPERLGLAILYNPPKVFESFWTVVKPFLEPKTY 206
+GW ++ V ++ A VL + +P ++ L N P +F + ++++KPFL K
Sbjct: 160 LEGWQFSHAFQITPSVAKKIAAVLTDSFPLKVRGIHLINEPVIFHAVFSMIKPFLTEKIK 219
Query: 207 KKVRFAYSNDPQSQKIMEALFDINKLDSSFGG 238
+++ +N QS +++ DI L+ +GG
Sbjct: 220 ERIHMHGNNYKQS--LLQHFPDILPLE--YGG 247
>pdb|1R5L|A Chain A, Crystal Structure Of Human Alpha-tocopherol Transfer
Protein Bound To Its Ligand
Length = 262
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/212 (25%), Positives = 96/212 (45%), Gaps = 19/212 (8%)
Query: 38 PVLCSDESISRYLRARNWHTKKASKMLVESVKWRLEYKPEKIVWEDVAREAETGKLYRAN 97
P+ +D + R+LRAR++ A ++L KWR E PE + D+ + G L +A
Sbjct: 28 PLPLTDSFLLRFLRARDFDLDLAWRLLKNYYKWRAEC-PE--ISADLHPRSIIG-LLKAG 83
Query: 98 FC------DKLGRPVLIMRPGFQNSSSTEGQIKYLVYCM--ENAIMNLNPDREQMVWLID 149
+ D G VLI R + + V + E + + R + + D
Sbjct: 84 YHGVLRSRDPTGSKVLIYRIAHWDPKVFTAYDVFRVSLITSELIVQEVETQRNGIKAIFD 143
Query: 150 FQGWTMGS---VSVKVTRETANVLQNHYPERLGLAILYNPPKVFESFWTVVKPFLEPKTY 206
+GW ++ V ++ A VL + +P ++ L N P +F + ++ +KPFL K
Sbjct: 144 LEGWQFSHAFQITPSVAKKIAAVLTDSFPLKVRGIHLINEPVIFHAVFSXIKPFLTEKIK 203
Query: 207 KKVRFAYSNDPQSQKIMEALFDINKLDSSFGG 238
+++ +N QS +++ DI L+ +GG
Sbjct: 204 ERIHXHGNNYKQS--LLQHFPDILPLE--YGG 231
>pdb|3HX3|A Chain A, Crystal Structure Of Cralbp Mutant R234w
Length = 316
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 57/205 (27%), Positives = 96/205 (46%), Gaps = 25/205 (12%)
Query: 48 RYLRARNWHTKKASKMLVESVKWRLEYKPEKIVWEDVAREA-----ETGKLYRANFCDKL 102
R++RAR ++ +A ++L V +RL+Y PE +++ ++ EA E G + DK
Sbjct: 97 RFIRARKFNVGRAYELLRGYVNFRLQY-PE--LFDSLSPEAVRCTIEAGYPGVLSSRDKY 153
Query: 103 GRPVLIMRPGFQNSSSTEGQIKYLV--YC--MENAIMNLNPDREQMVWLIDFQGWTM--- 155
GR V + +N S E ++ YC +E + N + +F+G+T
Sbjct: 154 GRVVXLF--NIENWQSQEITFDEILQAYCFILEKLLENEETQINGFCIIENFKGFTXQQA 211
Query: 156 GSVSVKVTRETANVLQNHYPERLGLAILYNPPKVFESFWTVVKPFLEPKTYKKVRFAYSN 215
S+ R+ + LQ+ +P + P F + + VVKPFL+ K ++V F + +
Sbjct: 212 ASLRTSDLRKXVDXLQDSFPAWFKAIHFIHQPWYFTTTYNVVKPFLKSKLLERV-FVHGD 270
Query: 216 DPQS--QKIMEALFDINKLDSSFGG 238
D Q+I D N L S FGG
Sbjct: 271 DLSGFYQEI-----DENILPSDFGG 290
>pdb|1OLM|A Chain A, Supernatant Protein Factor In Complex With
Rrr-Alpha-Tocopherylquinone: A Link Between Oxidized
Vitamin E And Cholesterol Biosynthesis
pdb|1OLM|C Chain C, Supernatant Protein Factor In Complex With
Rrr-Alpha-Tocopherylquinone: A Link Between Oxidized
Vitamin E And Cholesterol Biosynthesis
Length = 403
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 56/230 (24%), Positives = 104/230 (45%), Gaps = 32/230 (13%)
Query: 9 GAEKSLSPEEQQAKINEVRKIIGPIADKYPVLCS--DESISRYLRARNWHTKKASKMLVE 66
G LSP +++A + K + D P L + D + R+LRAR++ +K+ ML +
Sbjct: 3 GRVGDLSPRQKEA----LAKFRENVQDVLPALPNPDDYFLLRWLRARSFDLQKSEAMLRK 58
Query: 67 SVKWRLEYKPEKIV-WE--DVAREAETGKLYRANFC--DKLGRPVL--IMRP----GFQN 115
V++R + + I+ W+ +V ++ +G + C D G PV I+ P G
Sbjct: 59 HVEFRKQKDIDNIISWQPPEVIQQYLSGGM-----CGYDLDGCPVWYDIIGPLDAKGLLF 113
Query: 116 SSSTEGQIK-------YLVYCMENAIMNLNPDREQMVWLIDFQGWTMGSV---SVKVTRE 165
S+S + ++ L+ + L E + + D +G + + +V+ E
Sbjct: 114 SASKQDLLRTKMRECELLLQECAHQTTKLGRKVETITIIYDCEGLGLKHLWKPAVEAYGE 173
Query: 166 TANVLQNHYPERLGLAILYNPPKVFESFWTVVKPFLEPKTYKKVRFAYSN 215
+ + +YPE L + PK+F + ++KPFL T KK+ +N
Sbjct: 174 FLCMFEENYPETLKRLFVVKAPKLFPVAYNLIKPFLSEDTRKKIMVLGAN 223
>pdb|1OLM|E Chain E, Supernatant Protein Factor In Complex With
Rrr-Alpha-Tocopherylquinone: A Link Between Oxidized
Vitamin E And Cholesterol Biosynthesis
Length = 403
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 56/230 (24%), Positives = 104/230 (45%), Gaps = 32/230 (13%)
Query: 9 GAEKSLSPEEQQAKINEVRKIIGPIADKYPVLCS--DESISRYLRARNWHTKKASKMLVE 66
G LSP +++A + K + D P L + D + R+LRAR++ +K+ ML +
Sbjct: 3 GRVGDLSPRQKEA----LAKFRENVQDVLPALPNPDDYFLLRWLRARSFDLQKSEAMLRK 58
Query: 67 SVKWRLEYKPEKIV-WE--DVAREAETGKLYRANFC--DKLGRPVL--IMRP----GFQN 115
V++R + + I+ W+ +V ++ +G + C D G PV I+ P G
Sbjct: 59 HVEFRKQKDIDNIISWQPPEVIQQYLSGGM-----CGYDLDGCPVWYDIIGPLDAKGLLF 113
Query: 116 SSSTEGQIK-------YLVYCMENAIMNLNPDREQMVWLIDFQGWTMGSV---SVKVTRE 165
S+S + ++ L+ + L E + + D +G + + +V+ E
Sbjct: 114 SASKQDLLRTKMRECELLLQECAHQTTKLGRKVETITIIYDCEGLGLKHLWKPAVEAYGE 173
Query: 166 TANVLQNHYPERLGLAILYNPPKVFESFWTVVKPFLEPKTYKKVRFAYSN 215
+ + +YPE L + PK+F + ++KPFL T KK+ +N
Sbjct: 174 FLCMFEENYPETLKRLFVVKAPKLFPVAYNLIKPFLSEDTRKKIMVLGAN 223
>pdb|1O6U|A Chain A, The Crystal Structure Of Human Supernatant Protein Factor
pdb|1O6U|C Chain C, The Crystal Structure Of Human Supernatant Protein Factor
pdb|1O6U|E Chain E, The Crystal Structure Of Human Supernatant Protein Factor
Length = 403
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 55/230 (23%), Positives = 101/230 (43%), Gaps = 32/230 (13%)
Query: 9 GAEKSLSPEEQQAKINEVRKIIGPIADKYPVLCS--DESISRYLRARNWHTKKASKMLVE 66
G LSP +++A + K + D P L + D + R+LRAR++ +K+ L +
Sbjct: 3 GRVGDLSPRQKEA----LAKFRENVQDVLPALPNPDDYFLLRWLRARSFDLQKSEAXLRK 58
Query: 67 SVKWRLEYKPEKIV-WE--DVAREAETGKLYRANFC--DKLGRPVL--IMRP----GFQN 115
V++R + + I+ W+ +V ++ +G C D G PV I+ P G
Sbjct: 59 HVEFRKQKDIDNIISWQPPEVIQQYLSG-----GXCGYDLDGCPVWYDIIGPLDAKGLLF 113
Query: 116 SSSTEGQIK-------YLVYCMENAIMNLNPDREQMVWLIDFQGWTMGSV---SVKVTRE 165
S+S + ++ L+ + L E + + D +G + + +V+ E
Sbjct: 114 SASKQDLLRTKXRECELLLQECAHQTTKLGRKVETITIIYDCEGLGLKHLWKPAVEAYGE 173
Query: 166 TANVLQNHYPERLGLAILYNPPKVFESFWTVVKPFLEPKTYKKVRFAYSN 215
+ +YPE L + PK+F + ++KPFL T KK+ +N
Sbjct: 174 FLCXFEENYPETLKRLFVVKAPKLFPVAYNLIKPFLSEDTRKKIXVLGAN 223
>pdb|3P0L|A Chain A, Human Steroidogenic Acute Regulatory Protein
pdb|3P0L|B Chain B, Human Steroidogenic Acute Regulatory Protein
pdb|3P0L|C Chain C, Human Steroidogenic Acute Regulatory Protein
pdb|3P0L|D Chain D, Human Steroidogenic Acute Regulatory Protein
Length = 221
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 4/74 (5%)
Query: 109 MRPGFQNSSSTEGQIK--YLVYCMENAIMNLNPDREQMVWL--IDFQGWTMGSVSVKVTR 164
M F N +G I+ + CM + +P + ++ WL ID +GW S+ +V
Sbjct: 139 MATDFGNMPEQKGVIRAEHGPTCMVLHPLAGSPSKTKLTWLLSIDLKGWLPKSIINQVLS 198
Query: 165 ETANVLQNHYPERL 178
+T NH +RL
Sbjct: 199 QTQVDFANHLRKRL 212
>pdb|4GOX|A Chain A, Sulfotransferase Domain From The Synechococcus Pcc 7002
Olefin Synthase
Length = 313
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 20/35 (57%)
Query: 6 RGFGAEKSLSPEEQQAKINEVRKIIGPIADKYPVL 40
R ++L+PE QAK+N+ K PIAD Y L
Sbjct: 82 RALMDLENLTPEASQAKVNQWVKANTPIADIYAYL 116
>pdb|1ASH|A Chain A, The Structure Of Ascaris Hemoglobin Domain I At 2.2
Angstroms Resolution: Molecular Features Of Oxygen
Avidity
Length = 150
Score = 27.7 bits (60), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 21/42 (50%)
Query: 164 RETANVLQNHYPERLGLAILYNPPKVFESFWTVVKPFLEPKT 205
RET N +R ++ PP+V+ FW + + +L KT
Sbjct: 83 RETFNAYTRELLDRHARDHVHMPPEVWTDFWKLFEEYLGKKT 124
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,831,196
Number of Sequences: 62578
Number of extensions: 390263
Number of successful extensions: 1010
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 984
Number of HSP's gapped (non-prelim): 17
length of query: 336
length of database: 14,973,337
effective HSP length: 99
effective length of query: 237
effective length of database: 8,778,115
effective search space: 2080413255
effective search space used: 2080413255
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)