Query 019727
Match_columns 336
No_of_seqs 242 out of 1373
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 06:12:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019727.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019727hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1olm_A SEC14-like protein 2; l 100.0 1.3E-49 4.4E-54 383.5 20.7 253 8-279 2-273 (403)
2 3hx3_A Retinaldehyde-binding p 100.0 1.8E-48 6E-53 363.6 20.6 237 14-255 53-306 (316)
3 3q8g_A CRAL-TRIO domain-contai 100.0 3E-48 1E-52 362.2 21.6 263 6-277 27-316 (320)
4 1r5l_A Alpha-TTP, protein (alp 100.0 4.1E-48 1.4E-52 351.9 17.1 242 12-258 2-252 (262)
5 1aua_A Phosphatidylinositol tr 100.0 3.1E-47 1E-51 352.4 20.3 231 6-243 18-268 (296)
6 3pg7_A Neurofibromin; SEC lipi 99.2 6E-12 2.1E-16 113.0 6.4 131 90-232 10-144 (256)
7 3peg_A Neurofibromin; SEC14 do 99.1 6.7E-11 2.3E-15 107.8 4.0 133 88-231 26-162 (290)
8 1wgl_A TOLL-interacting protei 85.5 2.2 7.5E-05 28.5 5.7 39 20-66 10-48 (59)
9 1ufz_A Hypothetical protein BA 83.1 4.2 0.00014 29.0 6.5 48 13-67 25-75 (83)
10 2dal_A Protein KIAA0794; FAS a 83.0 6.9 0.00024 26.2 7.5 47 8-64 5-51 (62)
11 2dam_A ETEA protein; KIAA0887, 80.8 8.8 0.0003 26.2 7.4 45 12-65 12-56 (67)
12 2dhy_A CUE domain-containing p 78.6 6.5 0.00022 26.9 6.1 42 18-67 17-58 (67)
13 1oai_A Nuclear RNA export fact 69.0 21 0.00071 23.6 6.6 47 13-69 2-48 (59)
14 2di0_A Activating signal coint 68.9 12 0.00042 25.8 5.6 45 14-66 8-52 (71)
15 2cp8_A NEXT to BRCA1 gene 1 pr 67.8 9.9 0.00034 24.8 4.6 42 16-66 5-47 (54)
16 1v92_A NSFL1 cofactor P47; 3-h 63.6 17 0.0006 22.2 5.2 37 19-64 5-41 (46)
17 2jp7_A MRNA export factor MEX6 63.3 28 0.00094 22.9 6.2 44 13-66 1-44 (57)
18 1otr_A Protein CUE2; protein-p 59.5 15 0.00052 23.4 4.3 40 20-67 5-44 (49)
19 3e21_A HFAF1, FAS-associated f 58.6 19 0.00065 22.4 4.5 36 19-63 5-41 (45)
20 2bwb_A Ubiquitin-like protein 57.0 12 0.00041 23.4 3.4 25 41-65 20-44 (46)
21 1z96_A DNA-damage, UBA-domain 56.9 13 0.00044 22.0 3.5 35 20-64 5-39 (40)
22 2dna_A Unnamed protein product 52.6 19 0.00064 24.6 4.1 45 14-67 13-58 (67)
23 2dah_A Ubiquilin-3; UBA domain 52.0 19 0.00065 23.3 3.9 39 20-67 10-48 (54)
24 1wr1_B Ubiquitin-like protein 51.3 15 0.00053 24.2 3.4 44 14-66 11-55 (58)
25 2dzl_A Protein FAM100B; UBA-li 50.6 54 0.0019 22.0 6.8 47 8-64 6-53 (66)
26 2dae_A KIAA0733 protein; mitog 49.3 36 0.0012 23.4 5.0 40 20-67 11-50 (75)
27 2knz_A Ubiquilin-4; cytoplasm, 48.4 18 0.00063 23.2 3.4 27 40-66 23-49 (53)
28 1vej_A Riken cDNA 4931431F19; 47.5 21 0.0007 24.9 3.7 38 20-66 30-67 (74)
29 2cp9_A EF-TS, EF-TSMT, elongat 46.4 46 0.0016 22.4 5.2 39 20-67 10-48 (64)
30 3lay_A Zinc resistance-associa 46.0 8.9 0.0003 31.5 1.9 62 12-74 66-129 (175)
31 1q02_A Sequestosome 1; helical 43.7 20 0.0007 23.0 2.9 22 44-65 27-48 (52)
32 1ify_A HHR23A, UV excision rep 43.2 22 0.00074 22.4 3.1 26 41-66 20-45 (49)
33 2jy5_A Ubiquilin-1; UBA, alter 42.6 26 0.0009 22.3 3.4 25 41-65 25-49 (52)
34 3o39_A Periplasmic protein rel 39.5 67 0.0023 23.9 5.8 59 12-72 16-74 (108)
35 1wji_A Tudor domain containing 39.1 39 0.0013 22.5 4.0 27 41-67 21-47 (63)
36 2g3q_A Protein YBL047C; endocy 37.6 32 0.0011 20.8 3.1 25 41-65 16-40 (43)
37 2cwb_A Chimera of immunoglobul 36.1 36 0.0012 25.5 3.8 27 40-66 78-104 (108)
38 1vdl_A Ubiquitin carboxyl-term 33.6 89 0.003 21.6 5.0 40 19-66 24-63 (80)
39 1vg5_A RSGI RUH-014, rhomboid 32.4 39 0.0013 23.4 3.2 26 41-66 41-66 (73)
40 2q3l_A Uncharacterized protein 31.7 85 0.0029 23.7 5.5 81 118-204 31-111 (126)
41 3itf_A Periplasmic adaptor pro 31.6 81 0.0028 24.8 5.4 60 12-73 44-103 (145)
42 1veg_A NEDD8 ultimate buster-1 30.9 60 0.0021 23.0 4.1 27 41-67 41-67 (83)
43 3oeo_A Spheroplast protein Y; 30.3 77 0.0026 24.6 5.1 56 12-69 32-87 (138)
44 2dak_A Ubiquitin carboxyl-term 28.7 69 0.0024 21.1 3.9 27 42-68 22-48 (63)
45 2oo3_A Protein involved in cat 28.7 28 0.00095 30.9 2.4 31 174-204 233-263 (283)
46 3ct6_A PTS-dependent dihydroxy 27.9 1E+02 0.0035 23.6 5.4 43 142-197 59-101 (131)
47 1p3q_Q VPS9P, vacuolar protein 27.0 43 0.0015 21.7 2.5 39 18-64 11-49 (54)
48 1wgn_A UBAP1, ubiquitin associ 27.0 78 0.0027 21.1 3.7 44 13-67 14-57 (63)
49 2l2l_A Transcriptional repress 26.9 54 0.0018 19.8 2.6 33 15-54 2-34 (43)
50 2d9s_A CBL E3 ubiquitin protei 26.1 1E+02 0.0035 19.8 4.1 27 41-67 21-47 (53)
51 3e7l_A Transcriptional regulat 24.7 1.5E+02 0.005 19.2 5.0 34 43-76 21-58 (63)
52 1l6x_B Minimized B-domain of p 23.8 61 0.0021 18.7 2.4 19 10-28 14-32 (34)
53 1wiv_A UBP14, ubiquitin-specif 23.7 72 0.0025 21.9 3.3 25 42-66 42-66 (73)
54 2qsf_X RAD23, UV excision repa 22.7 1.9E+02 0.0067 23.3 6.2 44 11-65 123-166 (171)
55 4dbg_B Ring finger protein 31; 22.2 61 0.0021 26.0 3.0 29 39-67 113-141 (162)
56 2ooa_A E3 ubiquitin-protein li 21.6 1.4E+02 0.0049 19.1 4.1 27 41-67 23-49 (52)
57 2lva_A Ubiquitin carboxyl-term 26.3 21 0.00071 27.4 0.0 43 17-67 16-58 (129)
58 1umq_A Photosynthetic apparatu 20.5 1.5E+02 0.0052 20.6 4.6 22 43-64 43-64 (81)
No 1
>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E*
Probab=100.00 E-value=1.3e-49 Score=383.45 Aligned_cols=253 Identities=20% Similarity=0.278 Sum_probs=220.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHhCCccCCCCCCCCHHHHHHHhhhcCCCHHHHHHHHHHHHHHhHHhCCCCccc---hhh
Q 019727 8 FGAEKSLSPEEQQAKINEVRKIIGPIADKYPVLCSDESISRYLRARNWHTKKASKMLVESVKWRLEYKPEKIVW---EDV 84 (336)
Q Consensus 8 ~g~~~~lt~e~~~~~i~elr~~l~~~~~~~~~~~~D~~LlRfLra~~~dv~~A~~~l~~~~~wR~~~~~~~i~~---~~~ 84 (336)
.|++++|| ++++++|++||+++++....++ ..+|.+|+||||||+||+++|.+||+++++||++++++.+.. ++.
T Consensus 2 ~g~~~~l~-~~q~~~l~~lr~~l~~~~~~l~-~~dD~~LlRFLrarkfdv~~A~~~l~~~l~wR~~~~~~~i~~~~~~~~ 79 (403)
T 1olm_A 2 SGRVGDLS-PRQKEALAKFRENVQDVLPALP-NPDDYFLLRWLRARSFDLQKSEAMLRKHVEFRKQKDIDNIISWQPPEV 79 (403)
T ss_dssp CSBTTBCC-HHHHHHHHHHHHHHGGGGGGSS-CCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTGGGGGGSCCCHH
T ss_pred CCCccCCC-HHHHHHHHHHHHHHHhhccCCC-CCChhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCCCcccccCCHHH
Confidence 58999999 7889999999999998743334 589999999999999999999999999999999998887643 122
Q ss_pred HHHHhhCceEeccccCCCCCcEEEEccCCCCCC------CHHHHHHHHHHHHHHHHHhcCC-------CcccEEEEEeCC
Q 019727 85 AREAETGKLYRANFCDKLGRPVLIMRPGFQNSS------STEGQIKYLVYCMENAIMNLNP-------DREQMVWLIDFQ 151 (336)
Q Consensus 85 ~~~l~~g~~~~~g~~Dk~GrpV~i~~~~~~d~~------~~~~~~~~~~~~lE~~~~~~~~-------~~~~~vvI~D~~ 151 (336)
...+.. .+++ |+|++||||+++++|++++. +.+++++++++++|.++..+.. ++.|+++|+|++
T Consensus 80 ~~~~~~--~~~~-g~Dk~GrpV~~~~~g~~d~~~l~~~~~~~~~~r~~~~~~E~~~~~~~~~s~~~g~~v~~~~~I~D~~ 156 (403)
T 1olm_A 80 IQQYLS--GGMC-GYDLDGCPVWYDIIGPLDAKGLLFSASKQDLLRTKMRECELLLQECAHQTTKLGRKVETITIIYDCE 156 (403)
T ss_dssp HHHHCC--BEEE-EECTTSCEEEEEECTTCCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCCEEEEEECT
T ss_pred HHHhCC--ceee-ccCCCcCEEEEEecCCCChHHhhccCCHHHHHHHHHHHHHHHHHHHHhhHHhhCCcccceEEEEECC
Confidence 222222 2334 48999999999999998864 6789999999999999987642 478999999999
Q ss_pred CCCCCCC---CHHHHHHHHHHHHhhcccccceEEEEcCCcchHHHHHHhhhccCcchhccEEEecCCChhhHHHHHccCC
Q 019727 152 GWTMGSV---SVKVTRETANVLQNHYPERLGLAILYNPPKVFESFWTVVKPFLEPKTYKKVRFAYSNDPQSQKIMEALFD 228 (336)
Q Consensus 152 g~s~~~~---~~~~~~~~~~~lq~~YPe~l~~i~IvN~P~~~~~~~~~vkpfL~~~t~~KI~~~~~~~~~~~~~L~~~id 228 (336)
|++++++ .++.++.++.++|++||+||+++||||+|++|.++|+++||||+++|++||+|+++ ++.+.|.++||
T Consensus 157 g~sl~~~~~~~~~~~k~~~~~lq~~YPerl~~i~iiN~P~~f~~i~~~ikpfl~~~t~~KI~~~~~---~~~~~L~~~I~ 233 (403)
T 1olm_A 157 GLGLKHLWKPAVEAYGEFLCMFEENYPETLKRLFVVKAPKLFPVAYNLIKPFLSEDTRKKIMVLGA---NWKEVLLKHIS 233 (403)
T ss_dssp TCCGGGGCHHHHHHHHHHHHHHHHHSTTCEEEEEEESCCTTHHHHHHHHGGGSCHHHHHTEEECCT---THHHHHTTTSC
T ss_pred CCCHHHHhhHHHHHHHHHHHHHHhhCcHhhCeEEEEeCCHHHHHHHHHHHhhcCHhhhceEEEECh---hHHHHHHhhcC
Confidence 9999997 36788999999999999999999999999999999999999999999999999976 35789999999
Q ss_pred cCCcchhcCCCCCCCCChHHHHhhhhhcchhhHhhhhcCCCCCCchhhhhh
Q 019727 229 INKLDSSFGGRSRVGFDYEAFGQLMRADDKKKSDLMNSGCSVPTDHLLVAS 279 (336)
Q Consensus 229 ~~~LP~~~GG~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~vp~~~~~~~~ 279 (336)
+++||++|||+++++ ++++.|.+.++.||+||++++....
T Consensus 234 ~~~LP~~yGG~~~~~-----------~~~~~c~~~i~~gg~vp~~~~~~~~ 273 (403)
T 1olm_A 234 PDQVPVEYGGTMTDP-----------DGNPKCKSKINYGGDIPRKYYVRDQ 273 (403)
T ss_dssp GGGSBGGGTSSBCCT-----------TCCTTCTTTCBCCCCCCGGGCSCSS
T ss_pred hhhCchhhCCCcCCC-----------CCCcccccccccCCCCCcccccCCC
Confidence 999999999999874 7999999999999999999876543
No 2
>3hx3_A Retinaldehyde-binding protein 1; lipid transfer protein, 11-CIS-retinal, bothnia dystrophy, acetylation, cytoplasm, disease mutation; HET: RET; 1.69A {Homo sapiens} PDB: 3hy5_A*
Probab=100.00 E-value=1.8e-48 Score=363.58 Aligned_cols=237 Identities=22% Similarity=0.308 Sum_probs=209.0
Q ss_pred CCHHHHHHHHHHHHHHhCCccCCC----------CCCCCHHHHHHHhhhcCCCHHHHHHHHHHHHHHhHHhCC--CCccc
Q 019727 14 LSPEEQQAKINEVRKIIGPIADKY----------PVLCSDESISRYLRARNWHTKKASKMLVESVKWRLEYKP--EKIVW 81 (336)
Q Consensus 14 lt~e~~~~~i~elr~~l~~~~~~~----------~~~~~D~~LlRfLra~~~dv~~A~~~l~~~~~wR~~~~~--~~i~~ 81 (336)
-+|+.++++|++||+||+++++.. ....||.+|+||||||+||+++|.+||+++++||+.++. +.+.+
T Consensus 53 E~~~~~~~~l~~LR~wi~~~p~l~~~l~~~~~~~~~~~dD~~LlRFLRarkfdv~kA~~~L~~~l~wR~~~~~~~~~~~~ 132 (316)
T 3hx3_A 53 EREETREEAVRELQEMVQAQAASGEELAVAVAERVQEKDSGFFLRFIRARKFNVGRAYELLRGYVNFRLQYPELFDSLSP 132 (316)
T ss_dssp ---CHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHTTTCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHCGGGTTTCCH
T ss_pred CChHHHHHHHHHHHHHHHhCCCccccccccccccCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCchhhcCCCH
Confidence 356788899999999999886521 145799999999999999999999999999999999862 45566
Q ss_pred hhhHHHHhhCceEeccccCCCCCcEEEEccCCCCCC--CHHHHHHHHHHHHHHHHHhcCCCcccEEEEEeCCCCCCCCC-
Q 019727 82 EDVAREAETGKLYRANFCDKLGRPVLIMRPGFQNSS--STEGQIKYLVYCMENAIMNLNPDREQMVWLIDFQGWTMGSV- 158 (336)
Q Consensus 82 ~~~~~~l~~g~~~~~g~~Dk~GrpV~i~~~~~~d~~--~~~~~~~~~~~~lE~~~~~~~~~~~~~vvI~D~~g~s~~~~- 158 (336)
+.+...+..|..++.+|+|++||||++++++++++. +..++++++++++|.++.....++.|+++|+|++|++++|+
T Consensus 133 ~~i~~~l~~g~~~~l~g~Dk~GrpVii~r~g~~d~~~~~~~~~~r~~~~~lE~~l~~~~~~v~g~v~IiD~~g~sl~~~~ 212 (316)
T 3hx3_A 133 EAVRCTIEAGYPGVLSSRDKYGRVVMLFNIENWQSQEITFDEILQAYCFILEKLLENEETQINGFCIIENFKGFTMQQAA 212 (316)
T ss_dssp HHHHHHHHTTSSEECSSCCTTSCEEEEEECTTCCTTTSCHHHHHHHHHHHHHHHTTSHHHHHHCEEEEEECTTCCHHHHH
T ss_pred HHHHHHHHcCCccccCCCCCCCCEEEEEecccCCCCCCCHHHHHHHHHHHHHHHHhcccCCcceEEEEEECCCCCHHHhc
Confidence 677777888997777679999999999999999876 47889999999999998766667799999999999999874
Q ss_pred --CHHHHHHHHHHHHhhcccccceEEEEcCCcchHHHHHHhhhccCcchhccEEEecCCChhhHHHHHccCCcCCcchhc
Q 019727 159 --SVKVTRETANVLQNHYPERLGLAILYNPPKVFESFWTVVKPFLEPKTYKKVRFAYSNDPQSQKIMEALFDINKLDSSF 236 (336)
Q Consensus 159 --~~~~~~~~~~~lq~~YPe~l~~i~IvN~P~~~~~~~~~vkpfL~~~t~~KI~~~~~~~~~~~~~L~~~id~~~LP~~~ 236 (336)
+++.++.++.++|++||++++++||||+|++|..+|+++||||+++|++||+|++++. +.|.++||+++||++|
T Consensus 213 ~~~~~~~k~~~~~lq~~YPerL~~i~iiN~P~~f~~i~~ivkpfl~~kt~~KI~~~~~~~----~~L~~~I~~~~LP~ey 288 (316)
T 3hx3_A 213 SLRTSDLRKMVDMLQDSFPAWFKAIHFIHQPWYFTTTYNVVKPFLKSKLLERVFVHGDDL----SGFYQEIDENILPSDF 288 (316)
T ss_dssp HCCHHHHHHHHHHHHTTSTTTEEEEEEESCCTTHHHHHHHHGGGCCHHHHTTEEEEETCC----HHHHHHSCGGGSBGGG
T ss_pred cCChHHHHHHHHHHHHhhhhhhceEEEEeCCHHHHHHHHHHHHhCCHHhhhheEEeCCCH----HHHHhhCCHhhCcHhh
Confidence 7889999999999999999999999999999999999999999999999999997653 6899999999999999
Q ss_pred CCCCCCCCChHHHHhhhhh
Q 019727 237 GGRSRVGFDYEAFGQLMRA 255 (336)
Q Consensus 237 GG~~~~~~~~~~~~~~~~~ 255 (336)
||++++ +|+..|++.+..
T Consensus 289 GG~~~~-~d~~~~~~~l~~ 306 (316)
T 3hx3_A 289 GGTLPK-YDGKAVAEQLFG 306 (316)
T ss_dssp TSSBCC-CCHHHHHHHHC-
T ss_pred CCCCCC-cChhHHHHHHcC
Confidence 999985 899999987654
No 3
>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A*
Probab=100.00 E-value=3e-48 Score=362.20 Aligned_cols=263 Identities=23% Similarity=0.317 Sum_probs=212.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHhCCccCCCCCCCCHHHHHHHhhhcCCCHHHHHHHHHHHHHHhHHhCCCCccchh--
Q 019727 6 RGFGAEKSLSPEEQQAKINEVRKIIGPIADKYPVLCSDESISRYLRARNWHTKKASKMLVESVKWRLEYKPEKIVWED-- 83 (336)
Q Consensus 6 ~~~g~~~~lt~e~~~~~i~elr~~l~~~~~~~~~~~~D~~LlRfLra~~~dv~~A~~~l~~~~~wR~~~~~~~i~~~~-- 83 (336)
...|+.++|| ++|+++|++||++|++.+ .+...||.+|+||||||+||+++|.+||+++++||++++++.+..+.
T Consensus 27 ~~~g~~~~lt-~~q~~~l~~lR~~l~~~~--~~~~~dD~~LLRFLRArkfdv~kA~~mL~~~l~WRk~~~vd~i~~~~~~ 103 (320)
T 3q8g_A 27 ALPGTPGNLT-KEQEEALLQFRSILLEKN--YKERLDDSTLLRFLRARKFDINASVEMFVETERWREEYGANTIIEDYEN 103 (320)
T ss_dssp SCTTSTTCCC-HHHHHHHHHHHHHHHHTT--CCSSCSHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTGGGHHHHHHH
T ss_pred CCCCCCCCCC-HHHHHHHHHHHHHHHhcC--CCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCcccccccccc
Confidence 4679999999 688999999999998875 35578999999999999999999999999999999999988775321
Q ss_pred -------hHHHH-hhCceEeccccCCCCCcEEEEccCCCCCC------CHHHHHHHHHHHHHHHHHh--------cCCCc
Q 019727 84 -------VAREA-ETGKLYRANFCDKLGRPVLIMRPGFQNSS------STEGQIKYLVYCMENAIMN--------LNPDR 141 (336)
Q Consensus 84 -------~~~~l-~~g~~~~~g~~Dk~GrpV~i~~~~~~d~~------~~~~~~~~~~~~lE~~~~~--------~~~~~ 141 (336)
....+ ..+..+++| +|++||||+|+++|++++. +.+++++++++.+|.++.. ....+
T Consensus 104 ~~~~~~~e~~~~~~~~~~~~~g-~Dk~GRpV~i~r~g~~d~~~l~~~~~~~~~lr~lv~~~E~~~~~~l~~~s~~~G~~v 182 (320)
T 3q8g_A 104 NKEAEDKERIKLAKMYPQYYHH-VDKDGRPLYFAELGGINLKKMYKITTEKQMLRNLVKEYELFATYRVPACSRRAGYLI 182 (320)
T ss_dssp THHHHHHHHHHHHTTSCEEEEE-ECTTCCEEEEEECTTCCHHHHHHHCCHHHHHHHHHHHHHHHHHTHHHHHHHHHTSCC
T ss_pred ccccchhHHHHHHHhCCceecC-CCCCcCEEEEEeccccCHHHhhccCCHHHHHHHHHHHHHHHHHHhhhHHHHhcCCCc
Confidence 11122 234455555 8999999999999999874 5678899999999998743 12346
Q ss_pred ccEEEEEeCCCCCCCCCC--HHHHHHHHHHHHhhcccccceEEEEcCCcchHHHHHHhhhccCcchhccEEEecCCChhh
Q 019727 142 EQMVWLIDFQGWTMGSVS--VKVTRETANVLQNHYPERLGLAILYNPPKVFESFWTVVKPFLEPKTYKKVRFAYSNDPQS 219 (336)
Q Consensus 142 ~~~vvI~D~~g~s~~~~~--~~~~~~~~~~lq~~YPe~l~~i~IvN~P~~~~~~~~~vkpfL~~~t~~KI~~~~~~~~~~ 219 (336)
.++++|+|++|+++++++ ++.++.++.++|++||+||+++||||+|++|+++|+++||||+++|++||+|++++ +
T Consensus 183 e~~~~IiD~~g~sl~~~~~~~~~~k~~~~~lq~~YPerl~~i~iiN~P~~f~~~~~~ikpfl~~~t~~KI~~~~~~---~ 259 (320)
T 3q8g_A 183 ETSCTVLDLKGISLSNAYHVLSYIKDVADISQNYYPERMGKFYIIHSPFGFSTMFKMVKPFLDPVTVSKIFILGSS---Y 259 (320)
T ss_dssp CCEEEEEECTTCCHHHHHHTHHHHHHHHHHHHHHSTTCEEEEEEESCCTTHHHHHTTTGGGSCHHHHHTEEECCTT---H
T ss_pred ceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHhhCchhhceEEEECCCHHHHHHHHHHHHhCCHHHhhhEEEeCCC---c
Confidence 788999999999999874 67899999999999999999999999999999999999999999999999999764 5
Q ss_pred HHHHHccCCcCCcchhcCCCCCCCCChHHHHhhhhhcchhh-HhhhhcCCCCCCchhhh
Q 019727 220 QKIMEALFDINKLDSSFGGRSRVGFDYEAFGQLMRADDKKK-SDLMNSGCSVPTDHLLV 277 (336)
Q Consensus 220 ~~~L~~~id~~~LP~~~GG~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~~vp~~~~~~ 277 (336)
.+.|.++||+++||++|||++++. +++.=.. ..+-.|.- +..+..+|++|.++...
T Consensus 260 ~~~L~~~i~~~~LP~~yGG~~~~~-~~~ggc~-~~~~gpw~~~~~~~~~~~~~~~~~~~ 316 (320)
T 3q8g_A 260 KKELLKQIPIENLPVKYGGTSVLH-NPNDKFY-YSDIGPWRDPRYIGPEGEIPNIFGKF 316 (320)
T ss_dssp HHHHHHHSCGGGSBGGGTSCBCCS-STTSCGG-GBCBSGGGCTTTCCTTCCCCCTTGGG
T ss_pred HHHHHhhCChhhCChhhCCCCCCC-CCCCCee-cCCCCCCCChhhcCCCCccCcccccC
Confidence 789999999999999999999873 1100000 01111111 24567788888876655
No 4
>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with vitamin E deficiency, transport protein; HET: MSE VIV; 1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB: 1oiz_A* 1oip_A*
Probab=100.00 E-value=4.1e-48 Score=351.90 Aligned_cols=242 Identities=20% Similarity=0.318 Sum_probs=202.9
Q ss_pred CCCCHHHHHHHHHHHHHHhCCccC-CCCCCCCHHHHHHHhhhcCCCHHHHHHHHHHHHHHhHHhCC--CCccchhhHHHH
Q 019727 12 KSLSPEEQQAKINEVRKIIGPIAD-KYPVLCSDESISRYLRARNWHTKKASKMLVESVKWRLEYKP--EKIVWEDVAREA 88 (336)
Q Consensus 12 ~~lt~e~~~~~i~elr~~l~~~~~-~~~~~~~D~~LlRfLra~~~dv~~A~~~l~~~~~wR~~~~~--~~i~~~~~~~~l 88 (336)
.+|| +.++++|+|||+++++.+. ..+..++|.+|+||||||+||+++|.++|+++++||++++. ..+.++++...+
T Consensus 2 ~~ls-~~~~~~l~~lr~~l~~~~~~~~~~~~dd~~LlRFLra~k~dv~~A~~~l~~~l~wR~~~~~i~~~~~~~~~~~~~ 80 (262)
T 1r5l_A 2 SHMS-PLLQPGLAALRRRAREAGVPLAPLPLTDSFLLRFLRARDFDLDLAWRLLKNYYKWRAECPEISADLHPRSIIGLL 80 (262)
T ss_dssp --------CTTHHHHHHHHHHHTCCCSSSCCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHCHHHHSCCCGGGTHHHH
T ss_pred CCcc-HHHHHHHHHHHHHHHhCCcccCCCCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhChHhhhcCChHHHHHHH
Confidence 3789 6888999999999987643 34667899999999999999999999999999999999841 345556677778
Q ss_pred hhCceEeccccCCCCCcEEEEccCCCCCC--CHHHHHHHHHHHHHHHHHhcCCCcccEEEEEeCCCCCCCCC---CHHHH
Q 019727 89 ETGKLYRANFCDKLGRPVLIMRPGFQNSS--STEGQIKYLVYCMENAIMNLNPDREQMVWLIDFQGWTMGSV---SVKVT 163 (336)
Q Consensus 89 ~~g~~~~~g~~Dk~GrpV~i~~~~~~d~~--~~~~~~~~~~~~lE~~~~~~~~~~~~~vvI~D~~g~s~~~~---~~~~~ 163 (336)
..|...+.+|+|++||||++++++++++. +..++.++.++++|.++...+.++.|+++|+|++|++++|+ +++.+
T Consensus 81 ~~g~~~~l~g~D~~GrpV~i~~~~~~d~~~~~~~~~~r~~~~~~E~~~~~~~~~~~g~~~I~D~~g~s~~~~~~~~~~~~ 160 (262)
T 1r5l_A 81 KAGYHGVLRSRDPTGSKVLIYRIAHWDPKVFTAYDVFRVSLITSELIVQEVETQRNGIKAIFDLEGWQFSHAFQITPSVA 160 (262)
T ss_dssp HTTCEEECSSCCTTCCEEEEEEGGGCCTTTSCHHHHHHHHHHHHHHHTTSHHHHHHCEEEEEECTTCCHHHHHHCCHHHH
T ss_pred HcCCccCCCCcCCCCCEEEEEeccccCcccCCHHHHHHHHHHHHHHHHhChhhcccceEEEEECCCCCHHHHhccCHHHH
Confidence 88887766679999999999999999886 46789999999999987766556789999999999999886 67899
Q ss_pred HHHHHHHHhhcccccceEEEEcCCcchHHHHHHhhhccCcchhccEEEecCCChhhHHHHHccCCcCCcchhcCCCCCCC
Q 019727 164 RETANVLQNHYPERLGLAILYNPPKVFESFWTVVKPFLEPKTYKKVRFAYSNDPQSQKIMEALFDINKLDSSFGGRSRVG 243 (336)
Q Consensus 164 ~~~~~~lq~~YPe~l~~i~IvN~P~~~~~~~~~vkpfL~~~t~~KI~~~~~~~~~~~~~L~~~id~~~LP~~~GG~~~~~ 243 (336)
+.++.++|++||++++++||||+|++|+++|+++||||+++|++||+|++++ +.+.|.++|| ++||++|||+++..
T Consensus 161 k~~~~~~q~~yPerl~~i~ivN~P~~f~~~~~~vkpfl~~~t~~Ki~~~~~~---~~~~L~~~i~-~~LP~~yGG~~~~~ 236 (262)
T 1r5l_A 161 KKIAAVLTDSFPLKVRGIHLINEPVIFHAVFSMIKPFLTEKIKERIHMHGNN---YKQSLLQHFP-DILPLEYGGEEFSM 236 (262)
T ss_dssp HHHHHHHHTSSSSCEEEEEEESCCGGGHHHHHHHGGGSCHHHHTTEEECCSS---CHHHHHHHST-TTSCGGGTCSSCCH
T ss_pred HHHHHHHHhhCChhhceEEEEeCCHHHHHHHHHHHHhcCHHHHhheEEeCCC---cHHHHHHHhh-hhCcHhhCCCCCCH
Confidence 9999999999999999999999999999999999999999999999999764 4688999999 99999999999865
Q ss_pred CChHH-HHhhhhhcch
Q 019727 244 FDYEA-FGQLMRADDK 258 (336)
Q Consensus 244 ~~~~~-~~~~~~~~d~ 258 (336)
.++.. |.+.+.+..+
T Consensus 237 ~~~~~~w~~~l~~~~~ 252 (262)
T 1r5l_A 237 EDICQEWTNFIMKSED 252 (262)
T ss_dssp HHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 55544 4444444433
No 5
>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding protein, peripheral golgi membrane protein, phospholipid exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae} SCOP: a.5.3.1 c.13.1.1
Probab=100.00 E-value=3.1e-47 Score=352.42 Aligned_cols=231 Identities=29% Similarity=0.406 Sum_probs=199.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHhCCccCCCCCCCCHHHHHHHhhhcCCCHHHHHHHHHHHHHHhHHhCCCCccchh--
Q 019727 6 RGFGAEKSLSPEEQQAKINEVRKIIGPIADKYPVLCSDESISRYLRARNWHTKKASKMLVESVKWRLEYKPEKIVWED-- 83 (336)
Q Consensus 6 ~~~g~~~~lt~e~~~~~i~elr~~l~~~~~~~~~~~~D~~LlRfLra~~~dv~~A~~~l~~~~~wR~~~~~~~i~~~~-- 83 (336)
...|+.++|| ++++++|++||+++++.+ ++...||.+|+||||||+||+++|.+||+++++||++++++.+..+.
T Consensus 18 ~~~~~~~~l~-~~q~~~l~~lr~~l~~~~--~~~~~dd~~LlRFLrarkfdv~~A~~~l~~~l~wR~~~~~~~i~~~~~~ 94 (296)
T 1aua_A 18 ALPGTPGNLD-SAQEKALAELRKLLEDAG--FIERLDDSTLLRFLRARKFDVQLAKEMFENCEKWRKDYGTDTILQDFHY 94 (296)
T ss_dssp SCTTSTTTCC-TTHHHHHHHHHHHHHHTT--CCSSCSHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTGGGHHHHCCC
T ss_pred cCCCCCCCCC-HHHHHHHHHHHHHHHhcC--CCCCCchHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCcchhhhcccc
Confidence 4678999999 688999999999998765 35678999999999999999999999999999999999988775321
Q ss_pred -hHHHHhh-CceEeccccCCCCCcEEEEccCCCCC------CCHHHHHHHHHHHHHHHHHhc--------CCCcccEEEE
Q 019727 84 -VAREAET-GKLYRANFCDKLGRPVLIMRPGFQNS------SSTEGQIKYLVYCMENAIMNL--------NPDREQMVWL 147 (336)
Q Consensus 84 -~~~~l~~-g~~~~~g~~Dk~GrpV~i~~~~~~d~------~~~~~~~~~~~~~lE~~~~~~--------~~~~~~~vvI 147 (336)
....+.. ...+++ |+|++||||+|+++|++++ .+.+++++++++.+|.++... ...+.++++|
T Consensus 95 ~~~~~~~~~~~~~~~-g~Dk~GrpV~i~~~g~~d~~~~~~~~~~~~~~~~~~~~~E~~~~~~~~~~s~~~g~~v~~~~~I 173 (296)
T 1aua_A 95 DEKPLIAKFYPQYYH-KTDKDGRPVYFEELGAVNLHEMNKVTSEERMLKNLVWEYESVVQYRLPACSRAAGHLVETSCTI 173 (296)
T ss_dssp TTHHHHGGGSCCEEE-EECTTSCEEEEECGGGCCHHHHTTTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHTSCCCCEEEE
T ss_pred CcHHHHHHhCCceec-ccCCCCCEEEEEeeccCChHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceeEEEE
Confidence 1122222 223444 4899999999999999875 367889999999999987642 3457899999
Q ss_pred EeCCCCCCCCCC--HHHHHHHHHHHHhhcccccceEEEEcCCcchHHHHHHhhhccCcchhccEEEecCCChhhHHHHHc
Q 019727 148 IDFQGWTMGSVS--VKVTRETANVLQNHYPERLGLAILYNPPKVFESFWTVVKPFLEPKTYKKVRFAYSNDPQSQKIMEA 225 (336)
Q Consensus 148 ~D~~g~s~~~~~--~~~~~~~~~~lq~~YPe~l~~i~IvN~P~~~~~~~~~vkpfL~~~t~~KI~~~~~~~~~~~~~L~~ 225 (336)
+|++|++++|++ ++.++.++.++|++||+||+++||||+|++|+++|+++||||+++|++||+|++++ +.+.|.+
T Consensus 174 ~D~~g~s~~~~~~~~~~~k~~~~~~q~~YPerl~~i~iiN~P~~f~~~~~iikpfl~~~t~~KI~~~~~~---~~~~L~~ 250 (296)
T 1aua_A 174 MDLKGISISSAYSVMSYVREASYISQNYYPERMGKFYIINAPFGFSTAFRLFKPFLDPVTVSKIFILGSS---YQKELLK 250 (296)
T ss_dssp EECTTCCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEEESCCHHHHHHHHHHGGGSCHHHHTTEEECCSC---CHHHHTT
T ss_pred EECCCCCHHHHHHHHHHHHHHHHHHHHhHHHhhCeEEEECchHHHHHHHHHHHhhcCHhhcceEEEeCcc---cHHHHHh
Confidence 999999999886 67899999999999999999999999999999999999999999999999999874 4788999
Q ss_pred cCCcCCcchhcCCCCCCC
Q 019727 226 LFDINKLDSSFGGRSRVG 243 (336)
Q Consensus 226 ~id~~~LP~~~GG~~~~~ 243 (336)
+||+++||++|||++++.
T Consensus 251 ~i~~~~LP~~yGG~~~~~ 268 (296)
T 1aua_A 251 QIPAENLPVKFGGKSEVD 268 (296)
T ss_dssp TSCSSSSBGGGTSCBCCC
T ss_pred hCCHhhCcHHhCCCCCCC
Confidence 999999999999999874
No 6
>3pg7_A Neurofibromin; SEC lipid binding domain, PH domain, lipid binding protein; HET: PTY; 2.19A {Homo sapiens} PDB: 2e2x_A* 3p7z_A* 2d4q_A*
Probab=99.25 E-value=6e-12 Score=112.99 Aligned_cols=131 Identities=9% Similarity=0.062 Sum_probs=102.1
Q ss_pred hCceEeccccCCCCCcEEEEccCCCCCCC--HHHHHHHHHHHHHHHHHhcCCCcccEEEEEeCCCCCCCCC-CHHHHHHH
Q 019727 90 TGKLYRANFCDKLGRPVLIMRPGFQNSSS--TEGQIKYLVYCMENAIMNLNPDREQMVWLIDFQGWTMGSV-SVKVTRET 166 (336)
Q Consensus 90 ~g~~~~~g~~Dk~GrpV~i~~~~~~d~~~--~~~~~~~~~~~lE~~~~~~~~~~~~~vvI~D~~g~s~~~~-~~~~~~~~ 166 (336)
.+.+| .+|.|++||||+++..++++... .+.++.+++..++... ...+++|+|+.|++..+. +.++++.+
T Consensus 10 ~~ify-~~G~d~dGrpViv~~~~~l~~~~~D~e~Ll~~vl~tl~~~~------~~~y~lV~d~T~~~~~n~p~~~wl~~~ 82 (256)
T 3pg7_A 10 LSIFY-QAGTSKAGNPIFYYVARRFKTGQINGDLLIYHVLLTLKPYY------AKPYEIVVDLTHTGPSNRFKTDFLSKW 82 (256)
T ss_dssp HTSEE-EEEECTTSCEEEEEEGGGCCBTTBCHHHHHHHHHHHHTTTT------TSCEEEEEECTTCCGGGCCCHHHHHHT
T ss_pred cCCEE-EcCcCCCCCEEEEEEeecCCCCCCCHHHHHHHHHHHHHHhc------CCCeEEEEECCCCCcccCCcHHHHHHH
Confidence 34455 44589999999999999987653 3334444444443222 367999999999998764 68899999
Q ss_pred HHHHHhhcccccceEEEEcCCcchHHHHHHh-hhccCcchhccEEEecCCChhhHHHHHccCCcCCc
Q 019727 167 ANVLQNHYPERLGLAILYNPPKVFESFWTVV-KPFLEPKTYKKVRFAYSNDPQSQKIMEALFDINKL 232 (336)
Q Consensus 167 ~~~lq~~YPe~l~~i~IvN~P~~~~~~~~~v-kpfL~~~t~~KI~~~~~~~~~~~~~L~~~id~~~L 232 (336)
.+++...|...|+++||+|++++|...++.+ ++|.+.+..+|++++++. .+|.++|+.++|
T Consensus 83 ~~llp~~~~kNlk~~Yivnpt~~~k~~~~~~~~~~~~~k~~~Ki~fv~sl-----~eL~~~i~~~~L 144 (256)
T 3pg7_A 83 FVVFPGFAYDNVSAVYIYNCNSWVREYTKYHERLLTGLKGSKRLVFIDCP-----GKLAEHIEHEQQ 144 (256)
T ss_dssp TTSSCHHHHHTEEEEEEESCCHHHHHHHHHTHHHHTTTTTCTTEEEESST-----TGGGGTSCGGGC
T ss_pred HHHcCHHHHhcccEEEEECCCHHHHHHHHHHhccccccccCCcEEEECCH-----HHHHhhcCHHHc
Confidence 9999999999999999999999999776654 566666888999999774 679999987755
No 7
>3peg_A Neurofibromin; SEC14 domain, pleckstrin homology domain, PH domain, phosphatidylethanolamin binding, lipid binding, lipid bindi protein; HET: PEV; 2.52A {Homo sapiens}
Probab=99.06 E-value=6.7e-11 Score=107.77 Aligned_cols=133 Identities=9% Similarity=0.052 Sum_probs=95.7
Q ss_pred HhhCceEeccccCCCCCcEEEEccCCCCCCC--HHHHHHHHHHHHHHHHHhcCCCcccEEEEEeCCCCCCCCC-CHHHHH
Q 019727 88 AETGKLYRANFCDKLGRPVLIMRPGFQNSSS--TEGQIKYLVYCMENAIMNLNPDREQMVWLIDFQGWTMGSV-SVKVTR 164 (336)
Q Consensus 88 l~~g~~~~~g~~Dk~GrpV~i~~~~~~d~~~--~~~~~~~~~~~lE~~~~~~~~~~~~~vvI~D~~g~s~~~~-~~~~~~ 164 (336)
+..+.++..+|.|++|+||+++.+++++... .+.++-+++..++... ...+++|+|+.+++..+- +.++++
T Consensus 26 i~~~~~f~~~g~d~dG~PViv~~~~~~~~~~~D~e~Lly~il~tl~~~~------~~~y~lV~D~T~~~~~n~p~~~~l~ 99 (290)
T 3peg_A 26 LKTLSIFYQAGTSKAGNPIFYYVARRFKTGQINGDLLIYHVLLTLKPYY------AKPYEIVVDLTHTGPSNRFKTDFLS 99 (290)
T ss_dssp GGGTTTEEEEEECTTSCEEEEEEGGGCCBTTBCHHHHHHHHHHHHTTTT------TSCEEEEEECTTCCGGGCCCHHHHG
T ss_pred hhcCCeEEEeccCCCCCEEEEEEeecCCccCCCHHHHHHHHHHHHHHhc------CCCeEEEEEcCCCCccCCChHHHHH
Confidence 3355566777799999999999999987643 3333333333333222 368999999999998764 688999
Q ss_pred HHHHHHHhhcccccceEEEEcCCcchHHHH-HHhhhccCcchhccEEEecCCChhhHHHHHccCCcCC
Q 019727 165 ETANVLQNHYPERLGLAILYNPPKVFESFW-TVVKPFLEPKTYKKVRFAYSNDPQSQKIMEALFDINK 231 (336)
Q Consensus 165 ~~~~~lq~~YPe~l~~i~IvN~P~~~~~~~-~~vkpfL~~~t~~KI~~~~~~~~~~~~~L~~~id~~~ 231 (336)
.+.+++...|+.+++++||+|++.+|...+ ...+++.+.+..+|+.++++- ..|..++++++
T Consensus 100 ~~~~llp~~~~kNl~~~Yi~np~~~f~~~~k~~~~~~~~~k~~~k~v~~~~~-----~~L~~~i~~~~ 162 (290)
T 3peg_A 100 KWFVVFPGFAYDNVSAVYIYNCNSWVREYTKYHERLLTGLKGSKRLVFIDCP-----GKLAEHIEHEQ 162 (290)
T ss_dssp GGGTSSCHHHHHTEEEEEEESCCHHHHHHHHHTTTTGGGGTTCTTEEEESSS-----CC---------
T ss_pred HHHHHCCHHHHhhccEEEEECCCHHHHHHHHHHHhhhhhhhcCceEEEcCCH-----HHHHhhCCHHH
Confidence 999999999999999999999999988765 467788888889999998653 33788887663
No 8
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=85.47 E-value=2.2 Score=28.51 Aligned_cols=39 Identities=15% Similarity=0.267 Sum_probs=32.3
Q ss_pred HHHHHHHHHHhCCccCCCCCCCCHHHHHHHhhhcCCCHHHHHHHHHH
Q 019727 20 QAKINEVRKIIGPIADKYPVLCSDESISRYLRARNWHTKKASKMLVE 66 (336)
Q Consensus 20 ~~~i~elr~~l~~~~~~~~~~~~D~~LlRfLra~~~dv~~A~~~l~~ 66 (336)
++.++.|++.+-. .+...+..-|+++++|++.|..+|-+
T Consensus 10 ee~l~~L~emFP~--------ld~~~I~~vL~a~~gdvd~aI~~LL~ 48 (59)
T 1wgl_A 10 EEDLKAIQDMFPN--------MDQEVIRSVLEAQRGNKDAAINSLLQ 48 (59)
T ss_dssp HHHHHHHHHHCSS--------SCHHHHHHHHTTTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCC--------CCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 4668888887732 57899999999999999999998854
No 9
>1ufz_A Hypothetical protein BAB28515; HBS1-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, translatio; NMR {Mus musculus} SCOP: a.5.9.1
Probab=83.07 E-value=4.2 Score=29.00 Aligned_cols=48 Identities=19% Similarity=0.398 Sum_probs=34.8
Q ss_pred CCCHHHHHH---HHHHHHHHhCCccCCCCCCCCHHHHHHHhhhcCCCHHHHHHHHHHH
Q 019727 13 SLSPEEQQA---KINEVRKIIGPIADKYPVLCSDESISRYLRARNWHTKKASKMLVES 67 (336)
Q Consensus 13 ~lt~e~~~~---~i~elr~~l~~~~~~~~~~~~D~~LlRfLra~~~dv~~A~~~l~~~ 67 (336)
+|++.++.+ ++.++|..++.. ..|..|.+-...++||+++|+..+-+-
T Consensus 25 ~Ls~~d~arL~SCLd~iR~VlGds-------V~e~~Lv~ailk~dfD~ekALd~vL~~ 75 (83)
T 1ufz_A 25 QLSEIDQARLYSCLDHMREVLGDA-------VPDDILTEAILKHKFDVQKALSVVLEQ 75 (83)
T ss_dssp HCCHHHHHHHHHHHHHHHHHTTTT-------SCHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHccc-------CCHHHHHHHHHHhcCCHHHHHHHHHhc
Confidence 377433322 567777777663 467888888899999999999987543
No 10
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=83.02 E-value=6.9 Score=26.21 Aligned_cols=47 Identities=21% Similarity=0.196 Sum_probs=36.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHhCCccCCCCCCCCHHHHHHHhhhcCCCHHHHHHHH
Q 019727 8 FGAEKSLSPEEQQAKINEVRKIIGPIADKYPVLCSDESISRYLRARNWHTKKASKML 64 (336)
Q Consensus 8 ~g~~~~lt~e~~~~~i~elr~~l~~~~~~~~~~~~D~~LlRfLra~~~dv~~A~~~l 64 (336)
..-...|+ ..+.++|.+|...-+ .+......||.+++||++.|+..+
T Consensus 5 ~~~~~~~s-~~~~e~i~qF~~iTg---------~~~~~A~~~Le~~~WnLe~Av~~f 51 (62)
T 2dal_A 5 SSGGSAAS-SALKGLIQQFTTITG---------ASESVGKHMLEACNNNLEMAVTMF 51 (62)
T ss_dssp CCCCCSSC-HHHHHHHHHHHHHTC---------CCHHHHHHHHHTTTSCHHHHHHHH
T ss_pred ccchhhcC-ccHHHHHHHHHHHhC---------CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 33456788 577788999886543 246788999999999999998765
No 11
>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=80.78 E-value=8.8 Score=26.16 Aligned_cols=45 Identities=22% Similarity=0.371 Sum_probs=35.7
Q ss_pred CCCCHHHHHHHHHHHHHHhCCccCCCCCCCCHHHHHHHhhhcCCCHHHHHHHHH
Q 019727 12 KSLSPEEQQAKINEVRKIIGPIADKYPVLCSDESISRYLRARNWHTKKASKMLV 65 (336)
Q Consensus 12 ~~lt~e~~~~~i~elr~~l~~~~~~~~~~~~D~~LlRfLra~~~dv~~A~~~l~ 65 (336)
..|+ ..+.++|.+|...-+- .+......||..++||++.|+..+-
T Consensus 12 ~~Ls-~~~~e~i~qF~~ITg~--------~d~~~A~~~Le~~~WnLe~Av~~ff 56 (67)
T 2dam_A 12 RDLT-QEQTEKLLQFQDLTGI--------ESMDQCRHTLEQHNWNIEAAVQDRL 56 (67)
T ss_dssp CCCC-HHHHHHHHHHHHHHCC--------SCHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred hhcC-hhHHHHHHHHHHHhCC--------CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 4789 5678899999987752 2456788999999999999987653
No 12
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=78.57 E-value=6.5 Score=26.92 Aligned_cols=42 Identities=14% Similarity=0.184 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHhCCccCCCCCCCCHHHHHHHhhhcCCCHHHHHHHHHHH
Q 019727 18 EQQAKINEVRKIIGPIADKYPVLCSDESISRYLRARNWHTKKASKMLVES 67 (336)
Q Consensus 18 ~~~~~i~elr~~l~~~~~~~~~~~~D~~LlRfLra~~~dv~~A~~~l~~~ 67 (336)
+.++++++|++.+-. .+...+..-|+++++|++.|.+.|-..
T Consensus 17 ~~~~~v~~L~~MFP~--------lD~~vI~~vL~a~~G~vd~aId~LL~m 58 (67)
T 2dhy_A 17 EFNQAMDDFKTMFPN--------MDYDIIECVLRANSGAVDATIDQLLQM 58 (67)
T ss_dssp CSHHHHHHHHHHCSS--------SCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHCCC--------CCHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 345778899988733 577899999999999999999987543
No 13
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=68.99 E-value=21 Score=23.61 Aligned_cols=47 Identities=21% Similarity=0.314 Sum_probs=37.3
Q ss_pred CCCHHHHHHHHHHHHHHhCCccCCCCCCCCHHHHHHHhhhcCCCHHHHHHHHHHHHH
Q 019727 13 SLSPEEQQAKINEVRKIIGPIADKYPVLCSDESISRYLRARNWHTKKASKMLVESVK 69 (336)
Q Consensus 13 ~lt~e~~~~~i~elr~~l~~~~~~~~~~~~D~~LlRfLra~~~dv~~A~~~l~~~~~ 69 (336)
-|| +++++.|.+|.+.-+ .+-.+-.++|...+||.++|.+.+.+...
T Consensus 2 ~ls-~~q~~mv~~~s~~Tg---------mn~~~s~~cL~~~~Wd~~~A~~~F~~l~~ 48 (59)
T 1oai_A 2 TLS-PEQQEMLQAFSTQSG---------MNLEWSQKCLQDNNWDYTRSAQAFTHLKA 48 (59)
T ss_dssp CCC-HHHHHHHHHHHHHHC---------CCHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CCC-HHHHHHHHHHHHHHC---------CCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 378 578888888886653 34579999999999999999998876543
No 14
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=68.89 E-value=12 Score=25.78 Aligned_cols=45 Identities=13% Similarity=0.228 Sum_probs=36.1
Q ss_pred CCHHHHHHHHHHHHHHhCCccCCCCCCCCHHHHHHHhhhcCCCHHHHHHHHHH
Q 019727 14 LSPEEQQAKINEVRKIIGPIADKYPVLCSDESISRYLRARNWHTKKASKMLVE 66 (336)
Q Consensus 14 lt~e~~~~~i~elr~~l~~~~~~~~~~~~D~~LlRfLra~~~dv~~A~~~l~~ 66 (336)
++..+-...|.+++..+-. +.+.++.+.|..++.|++.+...|-+
T Consensus 8 ~~~~~l~s~I~qV~DLfPd--------LG~gfi~~~L~~y~~nvE~vin~LLE 52 (71)
T 2di0_A 8 MCGVELDSLISQVKDLLPD--------LGEGFILACLEYYHYDPEQVINNILE 52 (71)
T ss_dssp CSSHHHHHHHHHHHHHCCS--------SCHHHHHHHHHHTTTCHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHHccc--------CCHHHHHHHHHHhCCCHHHHHHHHHc
Confidence 3546667788888877633 57899999999999999999988754
No 15
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=67.76 E-value=9.9 Score=24.79 Aligned_cols=42 Identities=17% Similarity=0.295 Sum_probs=31.2
Q ss_pred HHHHHH-HHHHHHHHhCCccCCCCCCCCHHHHHHHhhhcCCCHHHHHHHHHH
Q 019727 16 PEEQQA-KINEVRKIIGPIADKYPVLCSDESISRYLRARNWHTKKASKMLVE 66 (336)
Q Consensus 16 ~e~~~~-~i~elr~~l~~~~~~~~~~~~D~~LlRfLra~~~dv~~A~~~l~~ 66 (336)
||++.+ ++++|++. .++|...=.+-|+..++|+++|+..|-.
T Consensus 5 ~ee~~a~~L~~L~eM---------GF~D~~~N~~aL~~~~gnv~~aI~~Ll~ 47 (54)
T 2cp8_A 5 SSGQTAALMAHLFEM---------GFCDRQLNLRLLKKHNYNILQVVTELLQ 47 (54)
T ss_dssp SCTTHHHHHHHHHHH---------TCCCHHHHHHHHTTTTTCHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHc---------CCCcHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 344444 67777654 2567788899999999999999887754
No 16
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3
Probab=63.61 E-value=17 Score=22.22 Aligned_cols=37 Identities=16% Similarity=0.382 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHhCCccCCCCCCCCHHHHHHHhhhcCCCHHHHHHHH
Q 019727 19 QQAKINEVRKIIGPIADKYPVLCSDESISRYLRARNWHTKKASKML 64 (336)
Q Consensus 19 ~~~~i~elr~~l~~~~~~~~~~~~D~~LlRfLra~~~dv~~A~~~l 64 (336)
++++|.+|...-+ .+......||.+++||++.|+..+
T Consensus 5 ~~~~i~~F~~iTg---------~~~~~A~~~L~~~~wdle~Ai~~f 41 (46)
T 1v92_A 5 RQDALREFVAVTG---------AEEDRARFFLESAGWDLQIALASF 41 (46)
T ss_dssp HHHHHHHHHHHTC---------CCHHHHHHHHHHTTSCSHHHHHHH
T ss_pred HHHHHHHHHHHhC---------cCHHHHHHHHHHcCCCHHHHHHHH
Confidence 5567888875542 356888999999999999998765
No 17
>2jp7_A MRNA export factor MEX67; solution MEX67, UBA, translation; NMR {Saccharomyces cerevisiae} PDB: 2khh_A
Probab=63.33 E-value=28 Score=22.88 Aligned_cols=44 Identities=18% Similarity=0.133 Sum_probs=36.0
Q ss_pred CCCHHHHHHHHHHHHHHhCCccCCCCCCCCHHHHHHHhhhcCCCHHHHHHHHHH
Q 019727 13 SLSPEEQQAKINEVRKIIGPIADKYPVLCSDESISRYLRARNWHTKKASKMLVE 66 (336)
Q Consensus 13 ~lt~e~~~~~i~elr~~l~~~~~~~~~~~~D~~LlRfLra~~~dv~~A~~~l~~ 66 (336)
.|+ +.+++.|.+|...-+ .+-.+-.++|...+||.++|...+..
T Consensus 1 ~l~-~~q~~mv~~~s~~T~---------Mn~e~S~~cL~~n~Wd~~~A~~~F~~ 44 (57)
T 2jp7_A 1 RLN-PVQLELLNKLHLETK---------LNAEYTFMLAEQSNWNYEVAIKGFQS 44 (57)
T ss_dssp CCC-HHHHHHHHHHHHHHC---------SCHHHHHHHHHHTTTCSHHHHHHHHH
T ss_pred CCC-HHHHHHHHHHHHHHC---------CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 478 577788888886653 34579999999999999999999877
No 18
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=59.52 E-value=15 Score=23.37 Aligned_cols=40 Identities=13% Similarity=0.152 Sum_probs=30.4
Q ss_pred HHHHHHHHHHhCCccCCCCCCCCHHHHHHHhhhcCCCHHHHHHHHHHH
Q 019727 20 QAKINEVRKIIGPIADKYPVLCSDESISRYLRARNWHTKKASKMLVES 67 (336)
Q Consensus 20 ~~~i~elr~~l~~~~~~~~~~~~D~~LlRfLra~~~dv~~A~~~l~~~ 67 (336)
+.+++.|.+.+-. ++-..+..-|+.+++|+++|..+|-+.
T Consensus 5 e~~v~~L~EMFP~--------~~~~~ik~~L~~~~Gd~d~Ai~~LL~~ 44 (49)
T 1otr_A 5 ESKLSILMDMFPA--------ISKSKLQVHLLENNNDLDLTIGLLLKE 44 (49)
T ss_dssp HHHHHHHHHHCSS--------SCHHHHHHHHHHTTTCSHHHHHHHHHH
T ss_pred HHHHHHHHHHCCC--------CCHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 3556666666622 466789999999999999999998653
No 19
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}
Probab=58.63 E-value=19 Score=22.44 Aligned_cols=36 Identities=14% Similarity=0.270 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHhCCccCCCCCCCCH-HHHHHHhhhcCCCHHHHHHH
Q 019727 19 QQAKINEVRKIIGPIADKYPVLCSD-ESISRYLRARNWHTKKASKM 63 (336)
Q Consensus 19 ~~~~i~elr~~l~~~~~~~~~~~~D-~~LlRfLra~~~dv~~A~~~ 63 (336)
+.++|++|...-+- +| .....||.+++||++.|+..
T Consensus 5 ~de~ia~F~~iTG~---------~d~~~A~~~Lea~nWDLe~Av~~ 41 (45)
T 3e21_A 5 REMILADFQACTGI---------ENIDEAITLLEQNNWDLVAAING 41 (45)
T ss_dssp HHHHHHHHHHHHCC---------CCHHHHHHHHHHTTTCHHHHHTT
T ss_pred HHHHHHHHHHHHCC---------CCHHHHHHHHHHcCCcHHHHHHH
Confidence 56778888775433 34 67888999999999999753
No 20
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=57.02 E-value=12 Score=23.40 Aligned_cols=25 Identities=16% Similarity=0.013 Sum_probs=21.1
Q ss_pred CCHHHHHHHhhhcCCCHHHHHHHHH
Q 019727 41 CSDESISRYLRARNWHTKKASKMLV 65 (336)
Q Consensus 41 ~~D~~LlRfLra~~~dv~~A~~~l~ 65 (336)
.++...++-|++.++|+++|++.|-
T Consensus 20 ~d~~~~~~AL~~~~gnv~~Ave~L~ 44 (46)
T 2bwb_A 20 FDFDRNVAALRRSGGSVQGALDSLL 44 (46)
T ss_dssp CCHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CcHHHHHHHHHHhCCCHHHHHHHHH
Confidence 4556779999999999999998774
No 21
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=56.85 E-value=13 Score=22.00 Aligned_cols=35 Identities=23% Similarity=0.266 Sum_probs=25.3
Q ss_pred HHHHHHHHHHhCCccCCCCCCCCHHHHHHHhhhcCCCHHHHHHHH
Q 019727 20 QAKINEVRKIIGPIADKYPVLCSDESISRYLRARNWHTKKASKML 64 (336)
Q Consensus 20 ~~~i~elr~~l~~~~~~~~~~~~D~~LlRfLra~~~dv~~A~~~l 64 (336)
+++|++|... + .+.....+.|+++++|++.|...|
T Consensus 5 ~~~i~~L~~m-G---------f~~~~a~~AL~~~~~n~e~A~~~L 39 (40)
T 1z96_A 5 NSKIAQLVSM-G---------FDPLEAAQALDAANGDLDVAASFL 39 (40)
T ss_dssp HHHHHHHHHT-T---------CCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHc-C---------CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 4456666543 1 345677889999999999998765
No 22
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=52.62 E-value=19 Score=24.58 Aligned_cols=45 Identities=18% Similarity=0.122 Sum_probs=31.1
Q ss_pred CCHHHH-HHHHHHHHHHhCCccCCCCCCCCHHHHHHHhhhcCCCHHHHHHHHHHH
Q 019727 14 LSPEEQ-QAKINEVRKIIGPIADKYPVLCSDESISRYLRARNWHTKKASKMLVES 67 (336)
Q Consensus 14 lt~e~~-~~~i~elr~~l~~~~~~~~~~~~D~~LlRfLra~~~dv~~A~~~l~~~ 67 (336)
..||++ +.+|++|+..= +.++...++-|++.++|+++|++.|...
T Consensus 13 ~~pe~~y~~ql~qL~~MG---------F~d~~an~~AL~at~Gnve~Ave~L~~~ 58 (67)
T 2dna_A 13 QAPEVRFSKEMECLQAMG---------FVNYNANLQALIATDGDTNAAIYKLKSS 58 (67)
T ss_dssp CCHHHHTHHHHHHHHHHT---------CCCHHHHHHHHHHTTSCHHHHHHHHHHC
T ss_pred CChHHHHHHHHHHHHHcC---------CCcHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 344442 34666666432 3456677999999999999999888653
No 23
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=52.02 E-value=19 Score=23.29 Aligned_cols=39 Identities=21% Similarity=0.192 Sum_probs=28.4
Q ss_pred HHHHHHHHHHhCCccCCCCCCCCHHHHHHHhhhcCCCHHHHHHHHHHH
Q 019727 20 QAKINEVRKIIGPIADKYPVLCSDESISRYLRARNWHTKKASKMLVES 67 (336)
Q Consensus 20 ~~~i~elr~~l~~~~~~~~~~~~D~~LlRfLra~~~dv~~A~~~l~~~ 67 (336)
+.+|++|++.= +.++...++-|++.++|+++|++.|-..
T Consensus 10 ~~~l~~L~~MG---------F~d~~~n~~AL~~~~Gdv~~Ave~L~~~ 48 (54)
T 2dah_A 10 QVQLEQLRSMG---------FLNREANLQALIATGGDVDAAVEKLRQS 48 (54)
T ss_dssp HHHHHHHHHHT---------CCCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHcC---------CCcHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 34567666541 2345567899999999999999988653
No 24
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=51.30 E-value=15 Score=24.19 Aligned_cols=44 Identities=18% Similarity=0.222 Sum_probs=30.6
Q ss_pred CCHHH-HHHHHHHHHHHhCCccCCCCCCCCHHHHHHHhhhcCCCHHHHHHHHHH
Q 019727 14 LSPEE-QQAKINEVRKIIGPIADKYPVLCSDESISRYLRARNWHTKKASKMLVE 66 (336)
Q Consensus 14 lt~e~-~~~~i~elr~~l~~~~~~~~~~~~D~~LlRfLra~~~dv~~A~~~l~~ 66 (336)
..|++ .+.+|++|++.= +.++...++-|++.++|+++|++.|-.
T Consensus 11 ~~pe~~~~~qi~~L~~MG---------F~d~~~~~~AL~~~~gnve~Ave~L~~ 55 (58)
T 1wr1_B 11 LDPEERYEHQLRQLNDMG---------FFDFDRNVAALRRSGGSVQGALDSLLN 55 (58)
T ss_dssp GSHHHHTHHHHHHHHHHT---------CCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHcC---------CCcHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 34443 234666666541 345667799999999999999998754
No 25
>2dzl_A Protein FAM100B; UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=50.58 E-value=54 Score=22.04 Aligned_cols=47 Identities=23% Similarity=0.453 Sum_probs=33.6
Q ss_pred CCCCCCCCHH-HHHHHHHHHHHHhCCccCCCCCCCCHHHHHHHhhhcCCCHHHHHHHH
Q 019727 8 FGAEKSLSPE-EQQAKINEVRKIIGPIADKYPVLCSDESISRYLRARNWHTKKASKML 64 (336)
Q Consensus 8 ~g~~~~lt~e-~~~~~i~elr~~l~~~~~~~~~~~~D~~LlRfLra~~~dv~~A~~~l 64 (336)
.|...+++ + ..+++|.+|-..-+ .++.....||.+.+||++.|+..+
T Consensus 6 ~~~~~~m~-~~~~q~~i~qF~~iTg---------~~~~~A~~~Le~~~WdLe~Al~~f 53 (66)
T 2dzl_A 6 SGMSVNMD-ELRHQVMINQFVLAAG---------CAADQAKQLLQAAHWQFETALSTF 53 (66)
T ss_dssp CCCSCCCH-HHHHHHHHHHHHHHHC---------CCHHHHHHHHHTTTTCHHHHHHHH
T ss_pred hhhhHHhh-cCccHHHHHHHHHHcC---------CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 34445666 4 33367888885542 356788999999999999998765
No 26
>2dae_A KIAA0733 protein; mitogen-activated protein kinase kinase kinase 7 interacting protein 2, MAP3K7IP2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=49.28 E-value=36 Score=23.38 Aligned_cols=40 Identities=13% Similarity=0.230 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhCCccCCCCCCCCHHHHHHHhhhcCCCHHHHHHHHHHH
Q 019727 20 QAKINEVRKIIGPIADKYPVLCSDESISRYLRARNWHTKKASKMLVES 67 (336)
Q Consensus 20 ~~~i~elr~~l~~~~~~~~~~~~D~~LlRfLra~~~dv~~A~~~l~~~ 67 (336)
-+.+.+||+++-+. .|..+-.+++..+.|.+.+..+|.+-
T Consensus 11 ~qvfheLkQrFPEv--------Pd~VVsqc~~qN~~Nl~aC~~~L~qE 50 (75)
T 2dae_A 11 FQVLHDLRQKFPEV--------PEVVVSRCMLQNNNNLDACCAVLSQE 50 (75)
T ss_dssp HHHHHHHHHHSSSS--------CHHHHHHHHTTTTSCSHHHHHHHHHH
T ss_pred HHHHHHHHHhcccC--------cHHHHHHHHHHhccCHHHHHHHHHHh
Confidence 57799999999664 37899999999999999999999654
No 27
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=48.40 E-value=18 Score=23.18 Aligned_cols=27 Identities=19% Similarity=0.078 Sum_probs=22.9
Q ss_pred CCCHHHHHHHhhhcCCCHHHHHHHHHH
Q 019727 40 LCSDESISRYLRARNWHTKKASKMLVE 66 (336)
Q Consensus 40 ~~~D~~LlRfLra~~~dv~~A~~~l~~ 66 (336)
+.+.....+-|+++++|+++|++.|-.
T Consensus 23 F~~~~~~~~AL~~t~gnve~Ave~L~~ 49 (53)
T 2knz_A 23 FINREANLQALIATGGDINAAIERLLG 49 (53)
T ss_dssp CCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 346788899999999999999988754
No 28
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=47.54 E-value=21 Score=24.88 Aligned_cols=38 Identities=18% Similarity=0.249 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhCCccCCCCCCCCHHHHHHHhhhcCCCHHHHHHHHHH
Q 019727 20 QAKINEVRKIIGPIADKYPVLCSDESISRYLRARNWHTKKASKMLVE 66 (336)
Q Consensus 20 ~~~i~elr~~l~~~~~~~~~~~~D~~LlRfLra~~~dv~~A~~~l~~ 66 (336)
+.+|++|++.= +.++...++-|++.++|+++|++.|-.
T Consensus 30 e~qi~qL~eMG---------F~dr~~~~~AL~~t~Gnve~Ave~L~~ 67 (74)
T 1vej_A 30 QQELEELKALG---------FANRDANLQALVATDGDIHAAIEMLLG 67 (74)
T ss_dssp HHHHHHHHHHT---------CCCHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred HHHHHHHHHcC---------CCcHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 45677777541 345677899999999999999988753
No 29
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=46.37 E-value=46 Score=22.36 Aligned_cols=39 Identities=15% Similarity=0.082 Sum_probs=30.8
Q ss_pred HHHHHHHHHHhCCccCCCCCCCCHHHHHHHhhhcCCCHHHHHHHHHHH
Q 019727 20 QAKINEVRKIIGPIADKYPVLCSDESISRYLRARNWHTKKASKMLVES 67 (336)
Q Consensus 20 ~~~i~elr~~l~~~~~~~~~~~~D~~LlRfLra~~~dv~~A~~~l~~~ 67 (336)
.+.|.+||+....- -..+-+-|..+++|+++|...|++.
T Consensus 10 ~~~Vk~LRe~TGag---------~~dcKkAL~e~~GDi~~Ai~~Lr~k 48 (64)
T 2cp9_A 10 KELLMKLRRKTGYS---------FVNCKKALETCGGDLKQAEIWLHKE 48 (64)
T ss_dssp CHHHHHHHHHHCCC---------HHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC---------HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 36699999987542 2456678999999999999999865
No 30
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=45.95 E-value=8.9 Score=31.55 Aligned_cols=62 Identities=16% Similarity=0.087 Sum_probs=43.0
Q ss_pred CCCCHHHHHHHHHHHHHHhCCccCCCC--CCCCHHHHHHHhhhcCCCHHHHHHHHHHHHHHhHHh
Q 019727 12 KSLSPEEQQAKINEVRKIIGPIADKYP--VLCSDESISRYLRARNWHTKKASKMLVESVKWRLEY 74 (336)
Q Consensus 12 ~~lt~e~~~~~i~elr~~l~~~~~~~~--~~~~D~~LlRfLra~~~dv~~A~~~l~~~~~wR~~~ 74 (336)
-+|| ++|+++++++++........+. .......|..-+.+-++|-+++.+..++.-+.|.+.
T Consensus 66 LnLT-~EQq~ql~~I~~e~r~~~~~Lr~ql~akr~EL~aL~~a~~~DeakI~aL~~Ei~~Lr~qL 129 (175)
T 3lay_A 66 SPLT-TEQQATAQKIYDDYYTQTSALRQQLISKRYEYNALLTASSPDTAKINAVAKEMESLGQKL 129 (175)
T ss_dssp --CC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHH
T ss_pred ccCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHH
Confidence 4799 6888999999887654311000 111235566677789999999999999998888876
No 31
>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 2jy7_A 2jy8_A 2k0b_X 2knv_A 2rru_A 3b0f_A
Probab=43.69 E-value=20 Score=22.97 Aligned_cols=22 Identities=18% Similarity=0.326 Sum_probs=20.3
Q ss_pred HHHHHHhhhcCCCHHHHHHHHH
Q 019727 44 ESISRYLRARNWHTKKASKMLV 65 (336)
Q Consensus 44 ~~LlRfLra~~~dv~~A~~~l~ 65 (336)
.||-|.|.+.++|+.+|+..|.
T Consensus 27 GWLt~LL~~k~gDI~~aLD~lq 48 (52)
T 1q02_A 27 GWLTRLLQTKNYDIGAALDTIQ 48 (52)
T ss_dssp SHHHHHHHHTTTCHHHHHHHHT
T ss_pred cHHHHHHHHccCCHHHHHHHhh
Confidence 6999999999999999998874
No 32
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=43.21 E-value=22 Score=22.41 Aligned_cols=26 Identities=23% Similarity=0.267 Sum_probs=22.0
Q ss_pred CCHHHHHHHhhhcCCCHHHHHHHHHH
Q 019727 41 CSDESISRYLRARNWHTKKASKMLVE 66 (336)
Q Consensus 41 ~~D~~LlRfLra~~~dv~~A~~~l~~ 66 (336)
.+.....+-|+++++|+++|++.|-.
T Consensus 20 F~~~~a~~AL~~~~~n~e~A~e~L~~ 45 (49)
T 1ify_A 20 YERERVVAALRASYNNPHRAVEYLLT 45 (49)
T ss_dssp CCHHHHHHHHHTTTSCSHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 46678899999999999999987754
No 33
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=42.57 E-value=26 Score=22.34 Aligned_cols=25 Identities=20% Similarity=0.062 Sum_probs=21.4
Q ss_pred CCHHHHHHHhhhcCCCHHHHHHHHH
Q 019727 41 CSDESISRYLRARNWHTKKASKMLV 65 (336)
Q Consensus 41 ~~D~~LlRfLra~~~dv~~A~~~l~ 65 (336)
.+....++-|++.++|+++|++.|-
T Consensus 25 ~~~~~~~~AL~~t~gn~e~A~e~L~ 49 (52)
T 2jy5_A 25 LNREANLQALIATGGDINAAIERLL 49 (52)
T ss_dssp CCHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred CCHHHHHHHHHHhCCCHHHHHHHHH
Confidence 3677889999999999999998774
No 34
>3o39_A Periplasmic protein related to spheroblast format; alpha-helical, structural genomics, montreal-kingston bacter structural genomics initiative; HET: MSE; 2.60A {Escherichia coli}
Probab=39.55 E-value=67 Score=23.93 Aligned_cols=59 Identities=17% Similarity=0.231 Sum_probs=41.3
Q ss_pred CCCCHHHHHHHHHHHHHHhCCccCCCCCCCCHHHHHHHhhhcCCCHHHHHHHHHHHHHHhH
Q 019727 12 KSLSPEEQQAKINEVRKIIGPIADKYPVLCSDESISRYLRARNWHTKKASKMLVESVKWRL 72 (336)
Q Consensus 12 ~~lt~e~~~~~i~elr~~l~~~~~~~~~~~~D~~LlRfLra~~~dv~~A~~~l~~~~~wR~ 72 (336)
-+|| +++.+.|..|++........ +......-+...+.+-+||-.+|...+.+..+-..
T Consensus 16 L~LT-d~Qk~qir~L~~~~r~~~~~-~~~~~r~~m~~Li~ad~FDEaaar~l~~~~~~~~~ 74 (108)
T 3o39_A 16 LNLT-DAQKQQIREIMKGQRDQMKR-PPLEERRAMHDIIASDTFDKAKAEAQIAKMEEQRK 74 (108)
T ss_dssp SCCC-HHHHHHHHHHHHTTTTSCCC-CCHHHHHHHHHHHSSSSCCHHHHHHHHHHTHHHHH
T ss_pred CCCC-HHHHHHHHHHHHHHHHhccc-ccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHH
Confidence 3899 79999999999988765321 21112345777888999998888887765554443
No 35
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=39.07 E-value=39 Score=22.51 Aligned_cols=27 Identities=22% Similarity=0.179 Sum_probs=21.8
Q ss_pred CCHHHHHHHhhhcCCCHHHHHHHHHHH
Q 019727 41 CSDESISRYLRARNWHTKKASKMLVES 67 (336)
Q Consensus 41 ~~D~~LlRfLra~~~dv~~A~~~l~~~ 67 (336)
++.....+-|+++++|+++|+..|-.+
T Consensus 21 F~~~~a~~AL~~~~~nve~A~e~L~~~ 47 (63)
T 1wji_A 21 FSKEASRQALMDNGNNLEAALNVLLTS 47 (63)
T ss_dssp CCHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 456677889999999999998877654
No 36
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=37.61 E-value=32 Score=20.75 Aligned_cols=25 Identities=24% Similarity=0.482 Sum_probs=20.6
Q ss_pred CCHHHHHHHhhhcCCCHHHHHHHHH
Q 019727 41 CSDESISRYLRARNWHTKKASKMLV 65 (336)
Q Consensus 41 ~~D~~LlRfLra~~~dv~~A~~~l~ 65 (336)
.+.....+-|+++++|++.|...|-
T Consensus 16 F~~~~a~~AL~~~~~n~e~A~~~L~ 40 (43)
T 2g3q_A 16 FTEEEAHNALEKCNWDLEAATNFLL 40 (43)
T ss_dssp SCHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCcCHHHHHHHHH
Confidence 3567788899999999999988764
No 37
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=36.08 E-value=36 Score=25.49 Aligned_cols=27 Identities=22% Similarity=0.223 Sum_probs=22.9
Q ss_pred CCCHHHHHHHhhhcCCCHHHHHHHHHH
Q 019727 40 LCSDESISRYLRARNWHTKKASKMLVE 66 (336)
Q Consensus 40 ~~~D~~LlRfLra~~~dv~~A~~~l~~ 66 (336)
+.++...++-|++.++|+++|++.|-.
T Consensus 78 F~d~~~ni~AL~~t~Gdve~AVe~L~~ 104 (108)
T 2cwb_A 78 IQDDELSLRALQATGGDIQAALELIFA 104 (108)
T ss_dssp CCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 345678999999999999999998854
No 38
>1vdl_A Ubiquitin carboxyl-terminal hydrolase 25; UBA domain, mouse cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.5.2.1
Probab=33.64 E-value=89 Score=21.62 Aligned_cols=40 Identities=25% Similarity=0.321 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHhCCccCCCCCCCCHHHHHHHhhhcCCCHHHHHHHHHH
Q 019727 19 QQAKINEVRKIIGPIADKYPVLCSDESISRYLRARNWHTKKASKMLVE 66 (336)
Q Consensus 19 ~~~~i~elr~~l~~~~~~~~~~~~D~~LlRfLra~~~dv~~A~~~l~~ 66 (336)
.+-.|++||+.-+- .|-.+|.--|.+.++|+..|+..|..
T Consensus 24 ~q~lLnQLrEITGi--------qD~~~L~~ALkas~Gdl~~AV~~LT~ 63 (80)
T 1vdl_A 24 QQTFLNQLREITGI--------NDAQILQQALKDSNGNLELAVAFLTA 63 (80)
T ss_dssp HHHHHHHHHHHSCC--------CCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCC--------CcHHHHHHHHHhccCCHHHHHHHHhc
Confidence 44578888876543 35588999999999999999998853
No 39
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=32.42 E-value=39 Score=23.36 Aligned_cols=26 Identities=15% Similarity=0.120 Sum_probs=21.6
Q ss_pred CCHHHHHHHhhhcCCCHHHHHHHHHH
Q 019727 41 CSDESISRYLRARNWHTKKASKMLVE 66 (336)
Q Consensus 41 ~~D~~LlRfLra~~~dv~~A~~~l~~ 66 (336)
++.....+-|+++++|+++|++.|..
T Consensus 41 F~r~~a~~AL~~~~~nve~Ave~Ll~ 66 (73)
T 1vg5_A 41 FDRTQVEVALAAADDDLTVAVEILMS 66 (73)
T ss_dssp CCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred CCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 46678888999999999999887753
No 40
>2q3l_A Uncharacterized protein; SPOIIAA-like fold, structural genomics, joint center for STR genomics, JCSG, protein structure initiative; HET: MSE; 2.25A {Shewanella loihica pv-4} SCOP: c.13.2.2
Probab=31.74 E-value=85 Score=23.73 Aligned_cols=81 Identities=15% Similarity=0.156 Sum_probs=50.6
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCCcccEEEEEeCCCCCCCCCCHHHHHHHHHHHHhhcccccceEEEEcCCcchHHHHHHh
Q 019727 118 STEGQIKYLVYCMENAIMNLNPDREQMVWLIDFQGWTMGSVSVKVTRETANVLQNHYPERLGLAILYNPPKVFESFWTVV 197 (336)
Q Consensus 118 ~~~~~~~~~~~~lE~~~~~~~~~~~~~vvI~D~~g~s~~~~~~~~~~~~~~~lq~~YPe~l~~i~IvN~P~~~~~~~~~v 197 (336)
+.+++.. ++-.+|..+.... ...+.+++|+..+ ..+++..+..-++.-..|. ..+.++-||-.+.|...+.+++
T Consensus 31 t~~d~~~-l~~~l~~~l~~~~--~~~i~ll~~~~~f--~G~~~~a~~~d~k~~~~h~-~~~~RiAvV~d~~W~~~~~~~~ 104 (126)
T 2q3l_A 31 THEDYEQ-MTPLLESALAGIK--TPEIVALIDITEL--DGLSLHAAWDDLKLGLKHG-KEFKRVAIIGQGELQEWATRVA 104 (126)
T ss_dssp CHHHHHH-HHHHHHHHTTTCC--SSCEEEEEEEEEE--EEECHHHHHHHHHHHHHHG-GGEEEEEEECCSHHHHHHHHHH
T ss_pred CHHHHHH-HHHHHHHHHHhCC--CceEEEEEEecCC--CCCCHHHHHHHHHhhhhHH-hcCCEEEEEcChHHHHHHHHHH
Confidence 3455554 5555666554322 1126666665432 2233555544444333444 7889999999999999999999
Q ss_pred hhccCcc
Q 019727 198 KPFLEPK 204 (336)
Q Consensus 198 kpfL~~~ 204 (336)
.+|++..
T Consensus 105 ~~~~~~e 111 (126)
T 2q3l_A 105 NWFTPGE 111 (126)
T ss_dssp HHHCSSE
T ss_pred hhccCCc
Confidence 9997764
No 41
>3itf_A Periplasmic adaptor protein CPXP; CPXR, CPXA, cpxrap, CPX-pathway, envelope stress, transduction; HET: MSE; 1.45A {Escherichia coli str} PDB: 3qzc_A
Probab=31.61 E-value=81 Score=24.82 Aligned_cols=60 Identities=13% Similarity=0.158 Sum_probs=41.1
Q ss_pred CCCCHHHHHHHHHHHHHHhCCccCCCCCCCCHHHHHHHhhhcCCCHHHHHHHHHHHHHHhHH
Q 019727 12 KSLSPEEQQAKINEVRKIIGPIADKYPVLCSDESISRYLRARNWHTKKASKMLVESVKWRLE 73 (336)
Q Consensus 12 ~~lt~e~~~~~i~elr~~l~~~~~~~~~~~~D~~LlRfLra~~~dv~~A~~~l~~~~~wR~~ 73 (336)
-+|| +++.++|.+|++........ ........+...+.+-+||-+++.+.+.+..+-+.+
T Consensus 44 L~LT-deQkqqir~L~~~~r~~~~~-~~~~~r~~l~~Li~ad~fDeaa~ral~~~~~~~~~e 103 (145)
T 3itf_A 44 ISLT-EHQRQQMRDLMQQARHEQPP-VNVSELETMHRLVTAENFDENAVRAQAEKMANEQIA 103 (145)
T ss_dssp CCCC-HHHHHHHHHHHHHHHHHSCC-CCHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHH
T ss_pred CCCC-HHHHHHHHHHHHHHHHHhhh-ccHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHH
Confidence 3799 79999999999876554221 111123457777889999998888888766554443
No 42
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=30.94 E-value=60 Score=23.01 Aligned_cols=27 Identities=15% Similarity=0.060 Sum_probs=22.4
Q ss_pred CCHHHHHHHhhhcCCCHHHHHHHHHHH
Q 019727 41 CSDESISRYLRARNWHTKKASKMLVES 67 (336)
Q Consensus 41 ~~D~~LlRfLra~~~dv~~A~~~l~~~ 67 (336)
++.....+-|++.++|+++|++.|-.+
T Consensus 41 F~~~~A~~AL~~t~gdve~A~e~L~sh 67 (83)
T 1veg_A 41 FDTVVAEAALRVFGGNVQLAAQTLAHH 67 (83)
T ss_dssp CCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 466788889999999999998887654
No 43
>3oeo_A Spheroplast protein Y; LTXXQ, extracytoplasmic stress response-related, signaling P; 2.70A {Escherichia coli}
Probab=30.31 E-value=77 Score=24.63 Aligned_cols=56 Identities=16% Similarity=0.238 Sum_probs=39.1
Q ss_pred CCCCHHHHHHHHHHHHHHhCCccCCCCCCCCHHHHHHHhhhcCCCHHHHHHHHHHHHH
Q 019727 12 KSLSPEEQQAKINEVRKIIGPIADKYPVLCSDESISRYLRARNWHTKKASKMLVESVK 69 (336)
Q Consensus 12 ~~lt~e~~~~~i~elr~~l~~~~~~~~~~~~D~~LlRfLra~~~dv~~A~~~l~~~~~ 69 (336)
-+|| +++++.|.+|++........ +.......|..-+.+-+||-.++...+.+...
T Consensus 32 L~LT-~eQ~~qir~i~~~~r~~~~~-~~~~~r~~l~~Li~a~~fDeaav~al~~~~~~ 87 (138)
T 3oeo_A 32 LNLT-DAQKQQIREIMKGQRDQMKR-PPLEERRAMHDIITSDTFDKVKAEAQIAKMEE 87 (138)
T ss_dssp SCCC-TTHHHHHHHHHHHHSSSSCC-CCTTHHHHHHHHHTCSSCCHHHHHHHHGGGSH
T ss_pred CCCC-HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhccCCCCHHHHHHHHHHHHH
Confidence 3799 78999999999988765321 22223356777778889998887776654433
No 44
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.73 E-value=69 Score=21.13 Aligned_cols=27 Identities=22% Similarity=0.283 Sum_probs=21.8
Q ss_pred CHHHHHHHhhhcCCCHHHHHHHHHHHH
Q 019727 42 SDESISRYLRARNWHTKKASKMLVESV 68 (336)
Q Consensus 42 ~D~~LlRfLra~~~dv~~A~~~l~~~~ 68 (336)
+.....+-|+++++|+++|+..|-.+.
T Consensus 22 ~~~~a~~AL~~t~~nve~A~e~L~~~~ 48 (63)
T 2dak_A 22 SRDQALKALRATNNSLERAVDWIFSHI 48 (63)
T ss_dssp CHHHHHHHHHHTTSCSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence 456788889999999999998887653
No 45
>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59
Probab=28.69 E-value=28 Score=30.89 Aligned_cols=31 Identities=23% Similarity=0.046 Sum_probs=23.8
Q ss_pred cccccceEEEEcCCcchHHHHHHhhhccCcc
Q 019727 174 YPERLGLAILYNPPKVFESFWTVVKPFLEPK 204 (336)
Q Consensus 174 YPe~l~~i~IvN~P~~~~~~~~~vkpfL~~~ 204 (336)
+...=..++|||+||-+....+-+-|+|.+.
T Consensus 233 ~gm~gsGm~viNpP~~l~~~~~~~l~~l~~~ 263 (283)
T 2oo3_A 233 EGMTGCGLWIINPPYTFPSEIKLVLETLTTY 263 (283)
T ss_dssp CSCCEEEEEEESCCTTHHHHHHHHHHHHHHH
T ss_pred CCcCceeEEEECCchhHHHHHHHHHHHHHHH
Confidence 3444457999999999998888887777653
No 46
>3ct6_A PTS-dependent dihydroxyacetone kinase, phosphotransferase subunit DHAM; mixed alpha beta structure, glycerol metabolism; 1.10A {Lactococcus lactis} SCOP: c.54.1.2 PDB: 3cr3_C*
Probab=27.90 E-value=1e+02 Score=23.63 Aligned_cols=43 Identities=9% Similarity=0.099 Sum_probs=26.2
Q ss_pred ccEEEEEeCCCCCCCCCCHHHHHHHHHHHHhhcccccceEEEEcCCcchHHHHHHh
Q 019727 142 EQMVWLIDFQGWTMGSVSVKVTRETANVLQNHYPERLGLAILYNPPKVFESFWTVV 197 (336)
Q Consensus 142 ~~~vvI~D~~g~s~~~~~~~~~~~~~~~lq~~YPe~l~~i~IvN~P~~~~~~~~~v 197 (336)
.|++++.|+ |-+. +...+.+.. .. .++.|+|+|.+...+...+
T Consensus 59 dgVlvltDL-Ggsp-------~N~~~al~~-~~----~~v~viNlPmvega~~aa~ 101 (131)
T 3ct6_A 59 DNLLTFFDL-GSAR-------MNLDLVSEM-TD----KELTIFNVPLIEGAYTASA 101 (131)
T ss_dssp SEEEEEESS-GGGH-------HHHHHHHHT-CS----SEEEECCSCHHHHHHHHHH
T ss_pred CCEEEEEeC-CCCh-------HHHHHHHHh-cC----CCEEEEEhhHHHHHHHHHH
Confidence 799999999 5332 111111111 11 3888889999876666544
No 47
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=27.01 E-value=43 Score=21.72 Aligned_cols=39 Identities=13% Similarity=0.093 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHhCCccCCCCCCCCHHHHHHHhhhcCCCHHHHHHHH
Q 019727 18 EQQAKINEVRKIIGPIADKYPVLCSDESISRYLRARNWHTKKASKML 64 (336)
Q Consensus 18 ~~~~~i~elr~~l~~~~~~~~~~~~D~~LlRfLra~~~dv~~A~~~l 64 (336)
+.++.+++|+..+- .+|...+..-|++++++++.|+..+
T Consensus 11 e~~~~~~~L~~MFP--------~lD~evI~~Vl~a~~G~~~~~IdaL 49 (54)
T 1p3q_Q 11 ERKDTLNTLQNMFP--------DMDPSLIEDVCIAAASRIGPCVDAL 49 (54)
T ss_dssp HHHHHHHHHHHHST--------TSCHHHHHHHHHHSCC--CGGGC--
T ss_pred HHHHHHHHHHHHcc--------cCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 44556666766662 2577899999999999999887655
No 48
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=26.99 E-value=78 Score=21.08 Aligned_cols=44 Identities=18% Similarity=0.241 Sum_probs=31.1
Q ss_pred CCCHHHHHHHHHHHHHHhCCccCCCCCCCCHHHHHHHhhhcCCCHHHHHHHHHHH
Q 019727 13 SLSPEEQQAKINEVRKIIGPIADKYPVLCSDESISRYLRARNWHTKKASKMLVES 67 (336)
Q Consensus 13 ~lt~e~~~~~i~elr~~l~~~~~~~~~~~~D~~LlRfLra~~~dv~~A~~~l~~~ 67 (336)
-|+| .++++|+.|-.. -.++....+-|++++.|+++|+.-|-.+
T Consensus 14 ~ls~-se~e~V~~LvsM----------GFs~~qA~kALKat~~NvErAaDWLFSH 57 (63)
T 1wgn_A 14 MLSP-SERQCVETVVNM----------GYSYECVLRAMKKKGENIEQILDYLFAH 57 (63)
T ss_dssp TCCH-HHHHHHHHHHHH----------HCCHHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred hhCc-chHHHHHHHHHc----------CCCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 4664 445666655422 2567889999999999999998876543
No 49
>2l2l_A Transcriptional repressor P66-alpha; DNA methylation, coiled-coil, NURD, MBD2, P66alpha, transfer; NMR {Homo sapiens}
Probab=26.86 E-value=54 Score=19.77 Aligned_cols=33 Identities=21% Similarity=0.331 Sum_probs=22.3
Q ss_pred CHHHHHHHHHHHHHHhCCccCCCCCCCCHHHHHHHhhhcC
Q 019727 15 SPEEQQAKINEVRKIIGPIADKYPVLCSDESISRYLRARN 54 (336)
Q Consensus 15 t~e~~~~~i~elr~~l~~~~~~~~~~~~D~~LlRfLra~~ 54 (336)
||+++++.|.+||+-|.... ..-.|++=||...
T Consensus 2 s~~ere~~i~~LreeLR~EE-------aKLvLLKKlrqSQ 34 (43)
T 2l2l_A 2 SPEERERMIKQLKEELRLEE-------AKLVLLKKLRQSQ 34 (43)
T ss_dssp CHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Confidence 57899999999999886531 1235666555543
No 50
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=26.06 E-value=1e+02 Score=19.82 Aligned_cols=27 Identities=22% Similarity=0.163 Sum_probs=23.7
Q ss_pred CCHHHHHHHhhhcCCCHHHHHHHHHHH
Q 019727 41 CSDESISRYLRARNWHTKKASKMLVES 67 (336)
Q Consensus 41 ~~D~~LlRfLra~~~dv~~A~~~l~~~ 67 (336)
.+.....|-|...++|++.|...|.++
T Consensus 21 F~r~~ai~AL~~a~nnve~Aa~iL~ef 47 (53)
T 2d9s_A 21 YSYQDIQKALVIAHNNIEMAKNILREF 47 (53)
T ss_dssp CCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 567788999999999999999999865
No 51
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=24.74 E-value=1.5e+02 Score=19.18 Aligned_cols=34 Identities=12% Similarity=0.093 Sum_probs=25.1
Q ss_pred HHHHHHHhhhcCCCHHHHHHHH----HHHHHHhHHhCC
Q 019727 43 DESISRYLRARNWHTKKASKML----VESVKWRLEYKP 76 (336)
Q Consensus 43 D~~LlRfLra~~~dv~~A~~~l----~~~~~wR~~~~~ 76 (336)
..++.+-|..+++|+.+|++.| ...+.+.+.+++
T Consensus 21 ~~~i~~aL~~~~gn~~~aA~~LGisr~tL~rklkk~gi 58 (63)
T 3e7l_A 21 KIFIEEKLREYDYDLKRTAEEIGIDLSNLYRKIKSLNI 58 (63)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHTCCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHCcCHHHHHHHHHHhCC
Confidence 4678889999999999999998 333444455654
No 52
>1l6x_B Minimized B-domain of protein A Z34C; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: k.13.1.1 PDB: 1oqo_C* 1oqx_C* 1zdc_A 1zdd_A
Probab=23.80 E-value=61 Score=18.72 Aligned_cols=19 Identities=32% Similarity=0.580 Sum_probs=15.0
Q ss_pred CCCCCCHHHHHHHHHHHHH
Q 019727 10 AEKSLSPEEQQAKINEVRK 28 (336)
Q Consensus 10 ~~~~lt~e~~~~~i~elr~ 28 (336)
|..+||++.+..-|..||+
T Consensus 14 h~~nLtEeQrn~yI~slkd 32 (34)
T 1l6x_B 14 HDPNLNEEQRNAKIKSIRD 32 (34)
T ss_dssp HCTTCCHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHhHHHHHhc
Confidence 4578997777788888876
No 53
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=23.68 E-value=72 Score=21.86 Aligned_cols=25 Identities=16% Similarity=0.278 Sum_probs=18.7
Q ss_pred CHHHHHHHhhhcCCCHHHHHHHHHH
Q 019727 42 SDESISRYLRARNWHTKKASKMLVE 66 (336)
Q Consensus 42 ~D~~LlRfLra~~~dv~~A~~~l~~ 66 (336)
+.....+-|+++++|+++|+..|-.
T Consensus 42 ~~~~a~~AL~~t~~nve~Ave~L~~ 66 (73)
T 1wiv_A 42 AEDVARKALKASGGDIEKATDWVFN 66 (73)
T ss_dssp CHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 4566777888888888888876643
No 54
>2qsf_X RAD23, UV excision repair protein RAD23; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_X* 2qsh_X* 1x3z_B* 1x3w_B* 3esw_B*
Probab=22.72 E-value=1.9e+02 Score=23.33 Aligned_cols=44 Identities=14% Similarity=0.207 Sum_probs=32.0
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCccCCCCCCCCHHHHHHHhhhcCCCHHHHHHHHH
Q 019727 11 EKSLSPEEQQAKINEVRKIIGPIADKYPVLCSDESISRYLRARNWHTKKASKMLV 65 (336)
Q Consensus 11 ~~~lt~e~~~~~i~elr~~l~~~~~~~~~~~~D~~LlRfLra~~~dv~~A~~~l~ 65 (336)
...+||+ ++++|+.|. .. -++....++-|.+|++|.+.|...|-
T Consensus 123 ~i~~tpe-e~eaI~rL~----~m------GF~r~~viqA~~ac~knee~Aan~L~ 166 (171)
T 2qsf_X 123 QVDYTPE-DDQAISRLC----EL------GFERDLVIQVYFACDKNEEAAANILF 166 (171)
T ss_dssp CCCCCHH-HHHHHHHHH----TT------TCCHHHHHHHHHHTTTCHHHHHHHHT
T ss_pred cCCCCcc-HHHHHHHHH----Hc------CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 4689964 456676544 22 25677888899999999999988764
No 55
>4dbg_B Ring finger protein 31; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens}
Probab=22.21 E-value=61 Score=25.97 Aligned_cols=29 Identities=14% Similarity=0.020 Sum_probs=24.5
Q ss_pred CCCCHHHHHHHhhhcCCCHHHHHHHHHHH
Q 019727 39 VLCSDESISRYLRARNWHTKKASKMLVES 67 (336)
Q Consensus 39 ~~~~D~~LlRfLra~~~dv~~A~~~l~~~ 67 (336)
...+..-+++.|+.+++||+.|..-|.+.
T Consensus 113 G~~~~~~~~~aL~~~~Gdv~~Al~eLqr~ 141 (162)
T 4dbg_B 113 GFGPEEGSLQALFQHGGDVSRALTELQRQ 141 (162)
T ss_dssp TCCGGGTHHHHHHHTTTCHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 45667789999999999999999988765
No 56
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=21.60 E-value=1.4e+02 Score=19.05 Aligned_cols=27 Identities=22% Similarity=0.175 Sum_probs=23.8
Q ss_pred CCHHHHHHHhhhcCCCHHHHHHHHHHH
Q 019727 41 CSDESISRYLRARNWHTKKASKMLVES 67 (336)
Q Consensus 41 ~~D~~LlRfLra~~~dv~~A~~~l~~~ 67 (336)
.+.....+-|+..++|++.|...|.++
T Consensus 23 Fsr~~ai~AL~~a~nnve~AaniLlef 49 (52)
T 2ooa_A 23 YAFEEVKRALEIAQNNVEVARSILREF 49 (52)
T ss_dssp CCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCCCHHHHHHHHHHh
Confidence 567889999999999999999988765
No 57
>2lva_A Ubiquitin carboxyl-terminal hydrolase 28; UIM, ubiquitin interacting motif, UBA domain, NESG, northeas structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=26.25 E-value=21 Score=27.36 Aligned_cols=43 Identities=23% Similarity=0.292 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHhCCccCCCCCCCCHHHHHHHhhhcCCCHHHHHHHHHHH
Q 019727 17 EEQQAKINEVRKIIGPIADKYPVLCSDESISRYLRARNWHTKKASKMLVES 67 (336)
Q Consensus 17 e~~~~~i~elr~~l~~~~~~~~~~~~D~~LlRfLra~~~dv~~A~~~l~~~ 67 (336)
...+-.|++||+.-+-. |-.+|..-|.|+++|+.+|+.+|..-
T Consensus 16 ~~~Q~lLNQLrEITGIq--------D~~~L~~ALkAsnGdl~qAV~~LT~~ 58 (129)
T 2lva_A 16 FQGQMLLNQLREITGIQ--------DPSFLHEALKASNGDITQAVSLLTDE 58 (129)
Confidence 45566788888765442 34688889999999999999998654
No 58
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=20.51 E-value=1.5e+02 Score=20.63 Aligned_cols=22 Identities=18% Similarity=0.210 Sum_probs=19.0
Q ss_pred HHHHHHHhhhcCCCHHHHHHHH
Q 019727 43 DESISRYLRARNWHTKKASKML 64 (336)
Q Consensus 43 D~~LlRfLra~~~dv~~A~~~l 64 (336)
..++.+.|..+++|+.+|++.|
T Consensus 43 r~~I~~aL~~~~GN~s~AA~~L 64 (81)
T 1umq_A 43 WEHIQRIYEMCDRNVSETARRL 64 (81)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHh
Confidence 3567888999999999999987
Done!