Query 019729
Match_columns 336
No_of_seqs 268 out of 1835
Neff 10.3
Searched_HMMs 29240
Date Mon Mar 25 06:14:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019729.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019729hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 100.0 1E-30 3.4E-35 242.8 28.8 273 44-322 6-316 (491)
2 3o7q_A L-fucose-proton symport 100.0 1.9E-26 6.4E-31 210.8 24.4 245 50-330 26-307 (438)
3 1pw4_A Glycerol-3-phosphate tr 99.9 1.2E-26 4.1E-31 212.8 16.4 265 46-329 24-299 (451)
4 2gfp_A EMRD, multidrug resista 99.9 4.9E-25 1.7E-29 197.5 11.9 235 55-328 5-245 (375)
5 4aps_A DI-OR tripeptide H+ sym 99.9 3E-20 1E-24 172.2 24.3 139 80-218 49-194 (491)
6 2xut_A Proton/peptide symporte 99.8 2.6E-17 9E-22 153.7 18.2 146 74-219 37-197 (524)
7 1pw4_A Glycerol-3-phosphate tr 99.6 1.6E-14 5.3E-19 132.0 17.9 152 69-220 271-433 (451)
8 2cfq_A Lactose permease; trans 99.6 8.8E-17 3E-21 146.0 1.6 153 70-222 27-189 (417)
9 4gc0_A D-xylose-proton symport 99.5 1.6E-14 5.5E-19 133.6 9.9 156 69-224 296-467 (491)
10 2cfq_A Lactose permease; trans 99.5 1.4E-13 4.7E-18 124.9 13.8 141 84-224 258-404 (417)
11 3o7q_A L-fucose-proton symport 99.5 1.5E-12 5E-17 118.5 18.3 147 71-220 279-432 (438)
12 4aps_A DI-OR tripeptide H+ sym 99.4 1.6E-12 5.5E-17 120.2 12.4 151 72-222 305-474 (491)
13 2gfp_A EMRD, multidrug resista 99.1 7.2E-11 2.5E-15 105.1 4.7 131 72-205 221-361 (375)
14 2xut_A Proton/peptide symporte 99.0 2.6E-09 9E-14 99.4 10.9 133 86-218 336-500 (524)
15 2g9p_A Antimicrobial peptide l 70.9 2.6 8.9E-05 19.8 1.7 14 104-117 2-15 (26)
16 4aw6_A CAAX prenyl protease 1 39.6 1.3E+02 0.0043 27.2 8.5 15 136-150 193-207 (482)
17 3arc_T Photosystem II reaction 34.0 44 0.0015 17.3 2.6 12 214-225 17-28 (32)
18 4dve_A Biotin transporter BIOY 30.1 1.4E+02 0.0047 23.2 6.3 24 92-115 100-123 (198)
19 3hd6_A Ammonium transporter RH 20.3 2.5E+02 0.0085 25.3 6.8 31 164-194 334-364 (490)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=100.00 E-value=1e-30 Score=242.78 Aligned_cols=273 Identities=30% Similarity=0.439 Sum_probs=218.0
Q ss_pred CChhhHHHHHHHHHhhhhhhccccccchhhHhHhhhccC--------CchhHHHHHHHHHHHHHHHHHHHHHHHhhhchh
Q 019729 44 GSVSVVFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKL--------TISEFSIFGSLANVGAMVGAIASGQIAEYIGRK 115 (336)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--------s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr 115 (336)
+++..+.+.++++++.+..|++.+.++..+|.+.++++. +....+++.+++.+|..+|++++|+++||+|||
T Consensus 6 ~~~y~~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk 85 (491)
T 4gc0_A 6 NSSYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRR 85 (491)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHH
T ss_pred ChHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 345677788888899999999999999999988877643 234578999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHH------------------hhcchhHHHHHHHHHHHHhhhhhhhHhHHHHhccCCCcchhHHh
Q 019729 116 GSLMIAAVPNIIGWLIIS------------------FSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGS 177 (336)
Q Consensus 116 ~~l~~~~~~~~~~~~~~~------------------~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~ 177 (336)
++++++.+++.++.++++ +++++++++++|+++|++.|+..+..+.+++|+.|+++|++..+
T Consensus 86 ~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~ 165 (491)
T 4gc0_A 86 DSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVS 165 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHH
Confidence 999999999999999998 47899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccc------------hhHHHHHHhHHHHHHHHHHhhcccCchhHHHHcCChHHHHHHHHHHhC
Q 019729 178 VNQLSVTIGIMLAYLLGLFV------------NWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRG 245 (336)
Q Consensus 178 ~~~~~~~~g~~~~~~~~~~~------------~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 245 (336)
+.+.+..+|.++++.++... .||+.+.+..+..++.++..+++||||+|+..+++.+++.+.+++.+.
T Consensus 166 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~ 245 (491)
T 4gc0_A 166 FNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMG 245 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhcC
Confidence 99999999999888876432 588888888888888888889999999999999999999998887765
Q ss_pred CChhhHHHHHHHHHHhhhhchhhhhhHHHHhcccchHHHHHHHHHHHHHHhhchHHHHHhHHHHHHhcCCCCcchhH
Q 019729 246 FDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGKINISLDV 322 (336)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~ 322 (336)
++...++.. +.++..++ .++....... ...++..+......+.++.+.+.+.+|.+.+.+..+.+......
T Consensus 246 ~~~~~~~~~-~~~~~~~~--~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (491)
T 4gc0_A 246 NTLATQAVQ-EIKHSLDH--GRKTGGRLLM---FGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALL 316 (491)
T ss_dssp HHHHHHHHH-HHHHHHHH--HHHHTTHHHH---SCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred CchhHHHHH-HHHHHHHh--hhhhhhHHHH---hcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhh
Confidence 432221111 11111111 1111111112 22345566677778888889999999999999988877655433
No 2
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.95 E-value=1.9e-26 Score=210.77 Aligned_cols=245 Identities=11% Similarity=0.090 Sum_probs=191.7
Q ss_pred HHHHHHHHhhhhhhccccccchhhHhHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHH
Q 019729 50 FCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGW 129 (336)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~ 129 (336)
.....+++..+..++......+..|.+.+++|++..+.+++.+++.++..++++++|+++||+|||++++++.++.+++.
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~ 105 (438)
T 3o7q_A 26 IPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGA 105 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 34444555566667777788889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHH---HhhcchhHHHHHHHHHHHHhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhhccch--------
Q 019729 130 LII---SFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFVN-------- 198 (336)
Q Consensus 130 ~~~---~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~-------- 198 (336)
+++ +++++++.+++.|++.|++.+...+...++++|++|+++|+++.++.+.+..+|.++++.+++.+.
T Consensus 106 ~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~ 185 (438)
T 3o7q_A 106 ALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQS 185 (438)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCC
T ss_pred HHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 999 888999999999999999999999999999999999999999999999999999999999987652
Q ss_pred ----------------------hHHHHHHhHHHHHHHHHHhhc--ccCchhHHHHcCChHHHHHHHHHHhCCChhhHHHH
Q 019729 199 ----------------------WRVLAVLGVLPCTLLIPGLFF--IPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEV 254 (336)
Q Consensus 199 ----------------------w~~~~~~~~~~~~~~~~~~~~--~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (336)
||+.|++.++..++..+..++ .||+++. ++ +
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~---~~---------------~------- 240 (438)
T 3o7q_A 186 QDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSD---NH---------------S------- 240 (438)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTT---CC---------------C-------
T ss_pred ccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCccccc---cc---------------c-------
Confidence 999998777665555443333 4554320 00 0
Q ss_pred HHHHHHhhhhchhhhhhHHHHhcccchHHHHHHHHHHHHHHhhchHHHHHhHHHH-HHhc-CCCCcchhHHHHHHHHh
Q 019729 255 NEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNI-FANA-GKINISLDVILPIVEAL 330 (336)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-g~s~~~~~~~~~~~~~~ 330 (336)
++++++.+..++++++++..+...+...+... ....+..|.|.+ +++. |++..+++.+.++..+.
T Consensus 241 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 307 (438)
T 3o7q_A 241 -------DAKQGSFSASLSRLARIRHWRWAVLAQFCYVG----AQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVC 307 (438)
T ss_dssp -------CSSTTSHHHHHHHHTTCSHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHH
T ss_pred -------cccccchhhhHHHHHhChHHHHHHHHHHHHHH----HHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHH
Confidence 00112233456677777665555444333332 345677888888 8887 99988888776655443
No 3
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.94 E-value=1.2e-26 Score=212.78 Aligned_cols=265 Identities=12% Similarity=0.052 Sum_probs=196.3
Q ss_pred hhhHHHHHHHHHhhhhhhccccccchhhHhHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHH
Q 019729 46 VSVVFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPN 125 (336)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~ 125 (336)
+..+......+++.+..++......+..|.+.+++ .+..+.+++.+++.++..++++++|+++||+|||++++++.++.
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~ 102 (451)
T 1pw4_A 24 RLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILA 102 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHH
Confidence 34455666666777777788888888999999999 99999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh----hcchhHHHHHHHHHHHHhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhhccc----
Q 019729 126 IIGWLIISF----SKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV---- 197 (336)
Q Consensus 126 ~~~~~~~~~----~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~---- 197 (336)
+++.+++++ +++++.++++|++.|++.+...+...+++.|++|+++|++++++.+.+..+|.+++|.+++.+
T Consensus 103 ~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~ 182 (451)
T 1pw4_A 103 AAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWF 182 (451)
T ss_dssp HHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHT
T ss_pred HHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999 999999999999999999999999999999999999999999999999999999999988654
Q ss_pred h-hHHHHHHhHHHHHHHH-HHhhcccCchhHHHHcCChHHHHHHHHHHhCCChhhHHHHHHHHHHhhhhchhhhhhHHHH
Q 019729 198 N-WRVLAVLGVLPCTLLI-PGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAEL 275 (336)
Q Consensus 198 ~-w~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (336)
+ ||+.|++.+++.++.. +.++++||+|+....++..+. .. +... +.++..++.....+...++.
T Consensus 183 g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~-~~~~---~~~~~~~~~~~~~~~~~~~~ 248 (451)
T 1pw4_A 183 NDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEY----------KN-DYPD---DYNEKAEQELTAKQIFMQYV 248 (451)
T ss_dssp CCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTT----------CC-C----------------CCTHHHHHHT
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhh----------cc-cccc---cchhhhhcccccccchHHHH
Confidence 7 9999999888776654 445678888753211111000 00 0000 00000000111111223455
Q ss_pred hcccchHHHHHHHHHHHHHHhhchHHHHHhHHHHHHh-cCCCCcchhHHHHHHHH
Q 019729 276 KRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFAN-AGKINISLDVILPIVEA 329 (336)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~~ 329 (336)
++++..+... +..+....+.+.+..|.|.++++ .|+++.+++.+.+...+
T Consensus 249 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 299 (451)
T 1pw4_A 249 LPNKLLWYIA----IANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEY 299 (451)
T ss_dssp SSCHHHHHHH----HHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHH
T ss_pred HcCHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 5554433332 23333333456788889999988 59998888777655544
No 4
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.92 E-value=4.9e-25 Score=197.52 Aligned_cols=235 Identities=14% Similarity=0.195 Sum_probs=185.2
Q ss_pred HHHhhhhhhccccccchhhHhHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHh
Q 019729 55 VALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISF 134 (336)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~ 134 (336)
+++..+..++......+..|.+.+++|.+..+.+++.++..++..+++++.|+++||+|||+++.++.++.+++.+++++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~ 84 (375)
T 2gfp_A 5 LVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVT 84 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHH
Confidence 34445555667777788899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcchhHHHHHHHHHHHHhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhhccc----hhHHHHHHhHHHH
Q 019729 135 SKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPC 210 (336)
Q Consensus 135 ~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~w~~~~~~~~~~~ 210 (336)
+++++.+++.|++.|++.+...+...+++.|++|+++|+++.++.+.+..+|..++|.+++.+ +||+.+++.++..
T Consensus 85 ~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 164 (375)
T 2gfp_A 85 TSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLC 164 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999998765 8999999888877
Q ss_pred HHHHH-HhhcccCchhHHHHcCChHHHHHHHHHHhCCChhhHHHHHHHHHHhhhhchhhhhhHHHHhcccchHHHHHHHH
Q 019729 211 TLLIP-GLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIG 289 (336)
Q Consensus 211 ~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (336)
++..+ ..+++||+++.. ++ +++....+++.++++..+...+..
T Consensus 165 ~~~~~~~~~~~~~~~~~~---~~--------------------------------~~~~~~~~~~~~~~~~~~~~~~~~- 208 (375)
T 2gfp_A 165 AGVTFSMARWMPETRPVD---AP--------------------------------RTRLLTSYKTLFGNSGFNCYLLML- 208 (375)
T ss_dssp HHHHCCCCCSSCCCSTTT---CC--------------------------------CCCTTTCSTHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHCcccCCCC---cc--------------------------------cccHHHHHHHHhcCcchHHHHHHH-
Confidence 77665 556678875410 00 001122334455554433333332
Q ss_pred HHHHHHhhchHHHHHhHHHHHHh-cCCCCcchhHHHHHHH
Q 019729 290 LLVLQQLSGINGVLFYSSNIFAN-AGKINISLDVILPIVE 328 (336)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~ 328 (336)
+....+.+.+..+.|.++++ .|.++.+++.+.+...
T Consensus 209 ---~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~ 245 (375)
T 2gfp_A 209 ---IGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPI 245 (375)
T ss_dssp ---HHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHH
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 22333345677777888776 5888777776655443
No 5
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.87 E-value=3e-20 Score=172.22 Aligned_cols=139 Identities=16% Similarity=0.224 Sum_probs=128.0
Q ss_pred ccCCchhHHHHHHHHHHHHHHHHHHHHHHHhh-hchhHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhhh
Q 019729 80 LKLTISEFSIFGSLANVGAMVGAIASGQIAEY-IGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYT 158 (336)
Q Consensus 80 ~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~ 158 (336)
+|.+..+.+++.+++.++..++++++|+++|| +|||+++.++.++.+++.++++++++++.++++|++.|++.+...+.
T Consensus 49 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~ 128 (491)
T 4aps_A 49 LHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPN 128 (491)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccch
Confidence 99999999999999999999999999999999 89999999999999999999999999999999999999999999999
Q ss_pred HhHHHHhccCCCc--chhHHhHHHHHHHHHHHHHHHhhccc----hhHHHHHHhHHHHHHHHHHhh
Q 019729 159 VPVYIAEIAPQNM--RGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPGLF 218 (336)
Q Consensus 159 ~~~~~~~~~~~~~--r~~~~~~~~~~~~~g~~~~~~~~~~~----~w~~~~~~~~~~~~~~~~~~~ 218 (336)
..++++|++|+++ |+.+.++++.+..+|..++|.+++.+ +||+.|++.++..++..+..+
T Consensus 129 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~ 194 (491)
T 4aps_A 129 VSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYY 194 (491)
T ss_dssp HHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999988 77788889999999999999988765 899999998777666655443
No 6
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.75 E-value=2.6e-17 Score=153.72 Aligned_cols=146 Identities=13% Similarity=0.127 Sum_probs=131.2
Q ss_pred HhHhhhcc------CCchhHHHHHHHHHHHHHHHHHHHHHHHhhh-chhHHHHHHHHHHHHHHHHHHhhc-chhHHHHHH
Q 019729 74 AEIISDLK------LTISEFSIFGSLANVGAMVGAIASGQIAEYI-GRKGSLMIAAVPNIIGWLIISFSK-DSSFLFMGR 145 (336)
Q Consensus 74 ~~~~~~~g------~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-Grr~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~r 145 (336)
+.+.+++| ++..+.+++.+++.++..++.+++|+++||+ |||+++.++.++.+++.+++++++ +++.+++.|
T Consensus 37 ~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (524)
T 2xut_A 37 PFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGL 116 (524)
T ss_dssp HHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHH
T ss_pred HHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 34667889 9999999999999999999999999999999 999999999999999999999998 999999999
Q ss_pred HHHHHHhhhhhhhHhHHHHhccCCCcchhHHhH---HHHHHHHHHHHHHHhhccc----hhHHHHHHhHHHHHHHHHHhh
Q 019729 146 LLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSV---NQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPGLF 218 (336)
Q Consensus 146 ~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~---~~~~~~~g~~~~~~~~~~~----~w~~~~~~~~~~~~~~~~~~~ 218 (336)
++.|++.+...+...+++.|++|+++|+++.+. .+.+..+|.+++|.+++.+ +||+.|++.+++.++..+..+
T Consensus 117 ~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~ 196 (524)
T 2xut_A 117 FLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFW 196 (524)
T ss_dssp HHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999877666 8889999999999988755 899999998877766655444
Q ss_pred c
Q 019729 219 F 219 (336)
Q Consensus 219 ~ 219 (336)
+
T Consensus 197 ~ 197 (524)
T 2xut_A 197 L 197 (524)
T ss_dssp S
T ss_pred H
Confidence 3
No 7
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.62 E-value=1.6e-14 Score=132.04 Aligned_cols=152 Identities=13% Similarity=0.155 Sum_probs=127.5
Q ss_pred cchhhHhHhhh-ccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhh--chhHHHHHHHHHHH-HHHHHHHhhc--chhHHH
Q 019729 69 SSPTQAEIISD-LKLTISEFSIFGSLANVGAMVGAIASGQIAEYI--GRKGSLMIAAVPNI-IGWLIISFSK--DSSFLF 142 (336)
Q Consensus 69 ~~~~~~~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~--Grr~~l~~~~~~~~-~~~~~~~~~~--~~~~~~ 142 (336)
.....|.+.++ +|.+..+.+++.++..++..++.++.|++.||+ |||+.+.++..+.. ++.++..+.+ +.+.+.
T Consensus 271 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (451)
T 1pw4_A 271 ILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDM 350 (451)
T ss_dssp HHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHH
Confidence 33455656555 899999999999999999999999999999999 99999888877766 6666666653 667777
Q ss_pred HHHHHHHHHhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHH-HHHHHHHhhccc----hhHHHHHHhHHHHHHHHHHh
Q 019729 143 MGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTI-GIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPGL 217 (336)
Q Consensus 143 ~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~~~~~~----~w~~~~~~~~~~~~~~~~~~ 217 (336)
+..++.|++.+...+....++.|.+|+++|+++.++.+....+ |..++|.+.+.+ +|+..|++.+++.++..+..
T Consensus 351 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~ 430 (451)
T 1pw4_A 351 ICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILL 430 (451)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence 8888999998888999999999999999999999999999999 999999888665 78999998888777776655
Q ss_pred hcc
Q 019729 218 FFI 220 (336)
Q Consensus 218 ~~~ 220 (336)
+++
T Consensus 431 ~~~ 433 (451)
T 1pw4_A 431 IVV 433 (451)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 8
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.61 E-value=8.8e-17 Score=146.02 Aligned_cols=153 Identities=13% Similarity=0.083 Sum_probs=101.8
Q ss_pred chhhHh-HhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHH---HHHHhhcch-hHHHHH
Q 019729 70 SPTQAE-IISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGW---LIISFSKDS-SFLFMG 144 (336)
Q Consensus 70 ~~~~~~-~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~---~~~~~~~~~-~~~~~~ 144 (336)
.+.+|. +++++|++..+.+++.++..++..++++++|+++||+|||++++++..+.+++. +...+.+.. ..++..
T Consensus 27 ~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (417)
T 2cfq_A 27 FPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVG 106 (417)
T ss_dssp TTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555 456689999999999999999999999999999999999999998887765432 111222211 112334
Q ss_pred HHHHHHHhhhhhhhHhHHHHhccCC--CcchhHHhHHHHHHHHHHHHHHHhhccc---hhHHHHHHhHHHHHHHHHHhhc
Q 019729 145 RLLEGFGVGVISYTVPVYIAEIAPQ--NMRGSLGSVNQLSVTIGIMLAYLLGLFV---NWRVLAVLGVLPCTLLIPGLFF 219 (336)
Q Consensus 145 r~l~G~~~g~~~~~~~~~~~~~~~~--~~r~~~~~~~~~~~~~g~~~~~~~~~~~---~w~~~~~~~~~~~~~~~~~~~~ 219 (336)
+.+.|++.|..++.....+.++.++ ++|+...+....+..+|..++|.+++.+ +||+.|++.++..++..+..++
T Consensus 107 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~~~~f~~~~~~~~~~~~~~~~ 186 (417)
T 2cfq_A 107 SIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLFF 186 (417)
T ss_dssp HHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHHHCSHHHHTTTTTTTTTHHHHSCS
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHH
Confidence 5555554444444444444444432 3556666776666777777888777655 7999998877765555555444
Q ss_pred ccC
Q 019729 220 IPE 222 (336)
Q Consensus 220 ~~e 222 (336)
.+|
T Consensus 187 ~~~ 189 (417)
T 2cfq_A 187 AKT 189 (417)
T ss_dssp SCC
T ss_pred cCc
Confidence 443
No 9
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.54 E-value=1.6e-14 Score=133.60 Aligned_cols=156 Identities=13% Similarity=0.032 Sum_probs=112.2
Q ss_pred cchhhHhHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhc----chhHHHHH
Q 019729 69 SSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSK----DSSFLFMG 144 (336)
Q Consensus 69 ~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~----~~~~~~~~ 144 (336)
.....+.+.+..+.+.........+..+...++.++.+++.||+|||+.++.+....+++.+..+... +....++.
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 375 (491)
T 4gc0_A 296 VLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLS 375 (491)
T ss_dssp HHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHH
Confidence 33455667778888887777888888899999999999999999999999999888887776655421 11222222
Q ss_pred HHH-HHHHhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhhccc----------hhHHHHHHhHHHHHHH
Q 019729 145 RLL-EGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----------NWRVLAVLGVLPCTLL 213 (336)
Q Consensus 145 r~l-~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----------~w~~~~~~~~~~~~~~ 213 (336)
-++ .+....+..++.+.+.+|.+|++.|+++.|+......+|.++++.+...+ ++.+.|++.++++++.
T Consensus 376 ~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~ 455 (491)
T 4gc0_A 376 MLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLA 455 (491)
T ss_dssp HHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 222 22222344567789999999999999999999988888888776654322 3345666666666666
Q ss_pred HH-HhhcccCch
Q 019729 214 IP-GLFFIPESP 224 (336)
Q Consensus 214 ~~-~~~~~~e~~ 224 (336)
.+ .++++|||+
T Consensus 456 ~i~~~~~~PETk 467 (491)
T 4gc0_A 456 ALFMWKFVPETK 467 (491)
T ss_dssp HHHHHHHCCCCT
T ss_pred HHHHHheecCCC
Confidence 44 567899995
No 10
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.51 E-value=1.4e-13 Score=124.92 Aligned_cols=141 Identities=13% Similarity=0.070 Sum_probs=116.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhhhHhHHH
Q 019729 84 ISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYI 163 (336)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~ 163 (336)
....+++.++..++..++.++.|+++||+|||+++..+.++.+++.++.++.++.+.+++..++.+++.+...+....++
T Consensus 258 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 337 (417)
T 2cfq_A 258 TRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYI 337 (417)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567888888888999999999999999999999998888888877777777877787888888888777777788999
Q ss_pred HhccCCCcchhHHhH-HHHHHHHHHHHHHHhhccc----hhHHHHHHhHHHHHHHHHH-hhcccCch
Q 019729 164 AEIAPQNMRGSLGSV-NQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPG-LFFIPESP 224 (336)
Q Consensus 164 ~~~~~~~~r~~~~~~-~~~~~~~g~~~~~~~~~~~----~w~~~~~~~~~~~~~~~~~-~~~~~e~~ 224 (336)
+|.+|++.|+++.++ ++....+|.+++|.+++.+ +++..|.+.+++++++.+. +...||++
T Consensus 338 ~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~ 404 (417)
T 2cfq_A 338 TSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp HHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred HHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 999999999999998 5778888988898888755 6778888888777776554 44566654
No 11
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.48 E-value=1.5e-12 Score=118.50 Aligned_cols=147 Identities=13% Similarity=-0.043 Sum_probs=117.7
Q ss_pred hhhHhH-h-hhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHH
Q 019729 71 PTQAEI-I-SDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLE 148 (336)
Q Consensus 71 ~~~~~~-~-~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~ 148 (336)
...|.+ . +.+|.+..+.+++.++..++..++.++.|+++||+|||+.+.++.++.+++.++..+.++.+.++. -++.
T Consensus 279 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 357 (438)
T 3o7q_A 279 SYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIA-LTLC 357 (438)
T ss_dssp HHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH-HHHH
T ss_pred HHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHHHHH-HHHH
Confidence 344444 4 445999999999999999999999999999999999999999999999999888888877765444 4888
Q ss_pred HHHhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhhccc----h-hHHHHHHhHHHHHHHHHHhhcc
Q 019729 149 GFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----N-WRVLAVLGVLPCTLLIPGLFFI 220 (336)
Q Consensus 149 G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~-w~~~~~~~~~~~~~~~~~~~~~ 220 (336)
|++.+..++...++..|.+|++ |+.+.++.. ...+|..++|.+.+.+ + ++..|++.+++.++.++..++.
T Consensus 358 g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 432 (438)
T 3o7q_A 358 SAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIFARFR 432 (438)
T ss_dssp HHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999966 888888766 4558888888887665 6 8878877666555544443333
No 12
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.40 E-value=1.6e-12 Score=120.18 Aligned_cols=151 Identities=16% Similarity=0.053 Sum_probs=115.3
Q ss_pred hhHhH-hhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHH-----HHHHHHHHHHHHHHhhc---------
Q 019729 72 TQAEI-ISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLM-----IAAVPNIIGWLIISFSK--------- 136 (336)
Q Consensus 72 ~~~~~-~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~-----~~~~~~~~~~~~~~~~~--------- 136 (336)
..+.+ .+.++.+..+.+++.+...++..++.++.+++.||+|||+... .+.++.+++.++..+..
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (491)
T 4aps_A 305 VLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKV 384 (491)
T ss_dssp HHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTC
T ss_pred HHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 33434 4446766567788888888999999999999999999987655 66777777766665532
Q ss_pred chhHHHHHHHHHHHHhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhhccc---hhHHHHHHhHHHHHHH
Q 019729 137 DSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV---NWRVLAVLGVLPCTLL 213 (336)
Q Consensus 137 ~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~---~w~~~~~~~~~~~~~~ 213 (336)
+.+.+++.-++.|++.+...+....++.|.+|+++|+++.++.+....+|..+++.+.+.+ ++.+.|++.+++.++.
T Consensus 385 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (491)
T 4aps_A 385 SPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAKSEVAYFSYFGLGSVVL 464 (491)
T ss_dssp CTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGSSTTHHHHHTHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 6677778889999999998999999999999999999999999999999999999998776 5566777777666665
Q ss_pred HHHh-hcccC
Q 019729 214 IPGL-FFIPE 222 (336)
Q Consensus 214 ~~~~-~~~~e 222 (336)
.+.. ++.++
T Consensus 465 ~~~~~~~~~~ 474 (491)
T 4aps_A 465 GIVLVFLSKR 474 (491)
T ss_dssp HHHHHHC---
T ss_pred HHHHHHHHHH
Confidence 4443 34443
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.07 E-value=7.2e-11 Score=105.13 Aligned_cols=131 Identities=18% Similarity=0.116 Sum_probs=100.2
Q ss_pred hhHhH-hhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHH-HHHHHH--HHHh--hcchhHHHHHH
Q 019729 72 TQAEI-ISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVP-NIIGWL--IISF--SKDSSFLFMGR 145 (336)
Q Consensus 72 ~~~~~-~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~-~~~~~~--~~~~--~~~~~~~~~~r 145 (336)
..|.+ ++.+|.++.+.+++.+...++..++.++.+++.||+|++. ..+..+ ...+.. .... .++.+.+++..
T Consensus 221 ~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (375)
T 2gfp_A 221 CSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLM--WQSVICCLLAGLLMWIPDWFGVMNVWTLLVPA 298 (375)
T ss_dssp HCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHHH--HHHHHHHHHTSSSSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhhccccHHHHHHHH
Confidence 33444 4448999999999999999999999999999999999833 223222 222222 2222 23566677788
Q ss_pred HHHHHHhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhhccc----hhHHHHHH
Q 019729 146 LLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVL 205 (336)
Q Consensus 146 ~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~w~~~~~~ 205 (336)
++.|++.+...+....++.|.+| ++|+++.++.+....+|..++|.+.+.+ +|+..+++
T Consensus 299 ~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~ 361 (375)
T 2gfp_A 299 ALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLM 361 (375)
T ss_dssp HHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHH
Confidence 89999999999999999999998 8999999999999999999998888766 45555544
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.96 E-value=2.6e-09 Score=99.38 Aligned_cols=133 Identities=18% Similarity=0.145 Sum_probs=96.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH----hhhch----hHHHHHHHHHHHHHHHHHHhh---------cchhHHHHHHHHH
Q 019729 86 EFSIFGSLANVGAMVGAIASGQIA----EYIGR----KGSLMIAAVPNIIGWLIISFS---------KDSSFLFMGRLLE 148 (336)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~g~l~----dr~Gr----r~~l~~~~~~~~~~~~~~~~~---------~~~~~~~~~r~l~ 148 (336)
..+++.+...++..++.++.+++. ||.|+ ++.+.++.++.+++.++.++. .+.+.+++..++.
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 415 (524)
T 2xut_A 336 EPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALL 415 (524)
T ss_dssp CHHHHHTTSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHH
Confidence 356666666677777777766654 55543 346667777777777766653 3566777888999
Q ss_pred HHHhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhhccc------hh---------HHHHHHhHHHHHHH
Q 019729 149 GFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV------NW---------RVLAVLGVLPCTLL 213 (336)
Q Consensus 149 G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~------~w---------~~~~~~~~~~~~~~ 213 (336)
|++.+...+....++.|.+|+++|++++|+.+....+|..++|.+.+.+ +| +..|++.+.+.++.
T Consensus 416 g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (524)
T 2xut_A 416 TFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFAILA 495 (524)
T ss_dssp HHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999988665 24 33356666655555
Q ss_pred HHHhh
Q 019729 214 IPGLF 218 (336)
Q Consensus 214 ~~~~~ 218 (336)
.+..+
T Consensus 496 ~~~~~ 500 (524)
T 2xut_A 496 AIVFA 500 (524)
T ss_dssp HHHHC
T ss_pred HHHHH
Confidence 44433
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=70.93 E-value=2.6 Score=19.81 Aligned_cols=14 Identities=29% Similarity=0.463 Sum_probs=11.4
Q ss_pred HHHHHHhhhchhHH
Q 019729 104 ASGQIAEYIGRKGS 117 (336)
Q Consensus 104 ~~g~l~dr~Grr~~ 117 (336)
++|.+..+||||.+
T Consensus 2 lfgklikkfgrkai 15 (26)
T 2g9p_A 2 LFGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHHTSHHH
T ss_pred cHHHHHHHHhHHHH
Confidence 46889999999864
No 16
>4aw6_A CAAX prenyl protease 1 homolog; hydrolase, M48 peptidase, integral membrane protein, prelami processing, ageing, progeria; HET: PC1; 3.40A {Homo sapiens} PDB: 2ypt_A
Probab=39.59 E-value=1.3e+02 Score=27.20 Aligned_cols=15 Identities=13% Similarity=0.038 Sum_probs=7.2
Q ss_pred cchhHHHHHHHHHHH
Q 019729 136 KDSSFLFMGRLLEGF 150 (336)
Q Consensus 136 ~~~~~~~~~r~l~G~ 150 (336)
.+++++.+.-+..++
T Consensus 193 g~~~wl~~w~~~~~~ 207 (482)
T 4aw6_A 193 GDYFFIYAWLFTLVV 207 (482)
T ss_dssp CSSHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHH
Confidence 445555544444444
No 17
>3arc_T Photosystem II reaction center protein T; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_T* 2axt_T* 3bz1_T* 3bz2_T* 3kzi_T* 3prq_T* 3prr_T* 3a0b_T* 3a0h_T*
Probab=34.01 E-value=44 Score=17.35 Aligned_cols=12 Identities=33% Similarity=0.423 Sum_probs=7.8
Q ss_pred HHHhhcccCchh
Q 019729 214 IPGLFFIPESPR 225 (336)
Q Consensus 214 ~~~~~~~~e~~~ 225 (336)
+....+++|+|+
T Consensus 17 iFFAI~FRePPr 28 (32)
T 3arc_T 17 FFFAIFFREPPR 28 (32)
T ss_dssp HHHHHHTSCCCC
T ss_pred HHHhhhhcCCCC
Confidence 344556788875
No 18
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=30.12 E-value=1.4e+02 Score=23.22 Aligned_cols=24 Identities=4% Similarity=-0.046 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhchh
Q 019729 92 SLANVGAMVGAIASGQIAEYIGRK 115 (336)
Q Consensus 92 ~~~~~~~~~~~~~~g~l~dr~Grr 115 (336)
.-+.+|..++..+.|++.||..++
T Consensus 100 gGYLiGF~~aA~v~G~l~~~~~~~ 123 (198)
T 4dve_A 100 GGYRIAWLFTPFLIGFFLKKLKIT 123 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTGG
T ss_pred hHHHHHHHHHHHHHHHHHHHcccc
Confidence 445677888889999999987543
No 19
>3hd6_A Ammonium transporter RH type C; ammonia, channel, rhesus, glycoprotein, membran structural genomics, PSI-2, protein structure initiative; HET: BOG; 2.10A {Homo sapiens}
Probab=20.27 E-value=2.5e+02 Score=25.32 Aligned_cols=31 Identities=6% Similarity=0.052 Sum_probs=18.1
Q ss_pred HhccCCCcchhHHhHHHHHHHHHHHHHHHhh
Q 019729 164 AEIAPQNMRGSLGSVNQLSVTIGIMLAYLLG 194 (336)
Q Consensus 164 ~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~ 194 (336)
.+...-+.---+.++...+..+|.++..+++
T Consensus 334 ~~kl~iDD~lgv~~vHGv~Gi~G~l~~glfa 364 (490)
T 3hd6_A 334 ESRLHIQDTCGINNLHGIPGIIGGIVGAVTA 364 (490)
T ss_dssp HHHHCCCCTTCHHHHTHHHHHHHHHHHHHHH
T ss_pred HHHCCCCccccchHHhhHHHHHHHHHHHHHh
Confidence 3444445545566677777777766655443
Done!