BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019730
(336 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1OKC|A Chain A, Structure Of Mitochondrial AdpATP CARRIER IN COMPLEX WITH
Carboxyatractyloside
pdb|2C3E|A Chain A, The Bovine Mitochondrial Adp-Atp Carrier
Length = 297
Score = 118 bits (296), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 86/299 (28%), Positives = 140/299 (46%), Gaps = 39/299 (13%)
Query: 61 VQQLLAGGIAGAFSKTCTAPLARLTILFQVQGMHSDLAALSK-PSILREASRIANEEGFR 119
++ LAGG+A A SKT AP+ R+ +L QVQ ++A + I+ RI E+GF
Sbjct: 8 LKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFL 67
Query: 120 AFWKGNL-------------------FLQSVL-GLDNHRESASVNLGVHFVGGGLAGMTA 159
+FW+GNL + Q L G+D H++ G + GG AG T+
Sbjct: 68 SFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAG-NLASGGAAGATS 126
Query: 160 ASATYPLDLVRTRL-------AAQRQAIYYKGIWHSFQTICREEGFLGLYKGLGATLLGV 212
YPLD RTRL AAQR+ + G+ + I + +G GLY+G ++ G+
Sbjct: 127 LCFVYPLDFARTRLAADVGKGAAQRE---FTGLGNCITKIFKSDGLRGLYQGFNVSVQGI 183
Query: 213 GPSIAISFSVYESLRSFWQSYRPNDPTVMVSLACGSLSGIASSTATFPIDLVRRRMQLEG 272
A F VY++ + P + ++VS + ++P D VRRRM ++
Sbjct: 184 IIYRAAYFGVYDTAKGMLPD--PKNVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQS 241
Query: 273 AGGRARVYNNGLLGTFRYIIQSEGLRGLYRGILPEYYKVVPGVG--IVFMTYETLKMLL 329
A + G + +R I + EG + ++G + V+ G+G V + Y+ +K +
Sbjct: 242 GRKGADIMYTGTVDCWRKIAKDEGPKAFFKG---AWSNVLRGMGGAFVLVLYDEIKKFV 297
>pdb|2LCK|A Chain A, Structure Of The Mitochondrial Uncoupling Protein 2
Determined By Nmr Molecular Fragment Replacement
Length = 303
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 70/302 (23%), Positives = 117/302 (38%), Gaps = 54/302 (17%)
Query: 63 QLLAGGIAGAFSKTCTAPLARLTILFQVQGMHSDL----AALSKPSILREASRIANEEGF 118
+ L G A + T PL + Q+QG L A+ +L + EG
Sbjct: 4 KFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGP 63
Query: 119 RAFWKGNLFLQSVLGLDNHRESASVNLGVH-------------------FVGGGLAGMTA 159
R+ + G V GL ASV +G++ + G G A
Sbjct: 64 RSLYNG-----LVAGLQRQMSFASVRIGLYDSVKQFYTKGSEHAGIGSRLLAGSTTGALA 118
Query: 160 ASATYPLDLVRTRLAAQRQA---IYYKGIWHSFQTICREEGFLGLYKGLGATLLGVGPSI 216
+ P D+V+ R AQ +A Y+ +++TI REEG GL+KG +
Sbjct: 119 VAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVN 178
Query: 217 AISFSVYESLRS--FWQSYRPNDPTVMVSLACGSLSGIASSTATFPIDLVRRRMQLEGAG 274
Y+ ++ + +D + A G+ G ++ P+D+V+ R
Sbjct: 179 CAELVTYDLIKDTLLKANLMTDDLPCHFTSAFGA--GFCTTVIASPVDVVKTR------- 229
Query: 275 GRARVYNNGLLGTFR-------YIIQSEGLRGLYRGILPEYYKVVPGVGIVFMTYETLKM 327
Y N LG + +++ EG R Y+G +P + ++ ++F+TYE LK
Sbjct: 230 -----YMNSALGQYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKR 284
Query: 328 LL 329
L
Sbjct: 285 AL 286
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 88/194 (45%), Gaps = 11/194 (5%)
Query: 145 LGVHFVGGGLAGMTAASATYPLDLVRTRLAAQRQ---------AIYYKGIWHSFQTICRE 195
+ V F+G G A A T+PLD + RL Q + + Y+G+ + T+ R
Sbjct: 1 MTVKFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRT 60
Query: 196 EGFLGLYKGLGATLLGVGPSIAISFSVYESLRSFWQSYRPNDPTVMVSLACGSLSGIASS 255
EG LY GL A L ++ +Y+S++ F+ + + L GS +G +
Sbjct: 61 EGPRSLYNGLVAGLQRQMSFASVRIGLYDSVKQFY-TKGSEHAGIGSRLLAGSTTGALAV 119
Query: 256 TATFPIDLVRRRMQLEGAGGRARVYNNGLLGTFRYIIQSEGLRGLYRGILPEYYKVVPGV 315
P D+V+ R Q + G R Y + + ++ I + EG+RGL++G P +
Sbjct: 120 AVAQPTDVVKVRFQAQARAGGGRRYQS-TVEAYKTIAREEGIRGLWKGTSPNVARNAIVN 178
Query: 316 GIVFMTYETLKMLL 329
+TY+ +K L
Sbjct: 179 CAELVTYDLIKDTL 192
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 80/200 (40%), Gaps = 21/200 (10%)
Query: 54 HQAQIGTVQQLLAGGIAGAFSKTCTAPLARLTILFQVQGMHSDLAALSKPSILREASRIA 113
A IG+ +LLAG GA + P + + FQ Q S + IA
Sbjct: 100 EHAGIGS--RLLAGSTTGALAVAVAQPTDVVKVRFQAQARAG--GGRRYQSTVEAYKTIA 155
Query: 114 NEEGFRAFWKG---NLFLQSVLGL------DNHRES------ASVNLGVHFVGGGLAGMT 158
EEG R WKG N+ +++ D +++ + +L HF AG
Sbjct: 156 REEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKANLMTDDLPCHFTSAFGAGFC 215
Query: 159 AASATYPLDLVRTRLAAQRQAIYYKGIWHSFQTICREEGFLGLYKGLGATLLGVGPSIAI 218
P+D+V+TR Y+ H T+ R+EG YKG + L +G +
Sbjct: 216 TTVIASPVDVVKTRYMNSALGQYHSA-GHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVV 274
Query: 219 SFSVYESL-RSFWQSYRPND 237
F YE L R+ +Y+ +
Sbjct: 275 MFVTYEQLKRALMAAYQSRE 294
>pdb|3HW3|A Chain A, The Crystal Structure Of Avian Influenza Virus Pa_n In
Complex With Ump
pdb|3HW3|B Chain B, The Crystal Structure Of Avian Influenza Virus Pa_n In
Complex With Ump
pdb|3HW3|C Chain C, The Crystal Structure Of Avian Influenza Virus Pa_n In
Complex With Ump
pdb|3HW3|D Chain D, The Crystal Structure Of Avian Influenza Virus Pa_n In
Complex With Ump
pdb|3HW5|A Chain A, Crystal Structure Of Avian Influenza Virus Pa_n In Complex
With Amp
pdb|3HW5|B Chain B, Crystal Structure Of Avian Influenza Virus Pa_n In Complex
With Amp
pdb|3HW5|C Chain C, Crystal Structure Of Avian Influenza Virus Pa_n In Complex
With Amp
pdb|3HW5|D Chain D, Crystal Structure Of Avian Influenza Virus Pa_n In Complex
With Amp
pdb|3HW6|A Chain A, Crystal Structure Of Avian Influenza Virus Pa_n In Complex
With Mn
pdb|3HW6|B Chain B, Crystal Structure Of Avian Influenza Virus Pa_n In Complex
With Mn
pdb|3HW6|C Chain C, Crystal Structure Of Avian Influenza Virus Pa_n In Complex
With Mn
pdb|3HW6|D Chain D, Crystal Structure Of Avian Influenza Virus Pa_n In Complex
With Mn
pdb|3HW4|A Chain A, Crystal Structure Of Avian Influenza A Virus In Complex
With Tmp
pdb|3HW4|B Chain B, Crystal Structure Of Avian Influenza A Virus In Complex
With Tmp
pdb|3HW4|C Chain C, Crystal Structure Of Avian Influenza A Virus In Complex
With Tmp
pdb|3HW4|D Chain D, Crystal Structure Of Avian Influenza A Virus In Complex
With Tmp
Length = 261
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 6/84 (7%)
Query: 159 AASATYPLD-----LVRTRLAAQRQAIYYKGIWHSFQTICR-EEGFLGLYKGLGATLLGV 212
A A Y LD ++TRL RQ + +G+W SF+ R EE ++ G
Sbjct: 161 ATKADYTLDEESRARIKTRLFTIRQEMASRGLWDSFRQSERGEETIEERFEITGTMCRLA 220
Query: 213 GPSIAISFSVYESLRSFWQSYRPN 236
S+ +FS E R++ + PN
Sbjct: 221 DQSLPPNFSSLEKFRAYVDGFEPN 244
>pdb|3EBJ|A Chain A, Crystal Structure Of An Avian Influenza Virus Protein
pdb|3EBJ|B Chain B, Crystal Structure Of An Avian Influenza Virus Protein
pdb|3EBJ|C Chain C, Crystal Structure Of An Avian Influenza Virus Protein
pdb|3EBJ|D Chain D, Crystal Structure Of An Avian Influenza Virus Protein
Length = 259
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 6/84 (7%)
Query: 159 AASATYPLD-----LVRTRLAAQRQAIYYKGIWHSFQTICR-EEGFLGLYKGLGATLLGV 212
A A Y LD ++TRL RQ + +G+W SF+ R EE ++ G
Sbjct: 159 ATKADYTLDEESRARIKTRLFTIRQEMASRGLWDSFRQSERGEETIEERFEITGTMCRLA 218
Query: 213 GPSIAISFSVYESLRSFWQSYRPN 236
S+ +FS E R++ + PN
Sbjct: 219 DQSLPPNFSSLEKFRAYVDGFEPN 242
>pdb|2I3O|A Chain A, Crystal Structure Of Gamma-Glutamyl Transferase Related
Protein From Thermoplasma Acidophilum
pdb|2I3O|B Chain B, Crystal Structure Of Gamma-Glutamyl Transferase Related
Protein From Thermoplasma Acidophilum
pdb|2I3O|C Chain C, Crystal Structure Of Gamma-Glutamyl Transferase Related
Protein From Thermoplasma Acidophilum
pdb|2I3O|D Chain D, Crystal Structure Of Gamma-Glutamyl Transferase Related
Protein From Thermoplasma Acidophilum
Length = 516
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Query: 100 LSKPSILREASRIANEEGFRAFWKGNLFLQSVLGLD 135
L +P L E+ R+ +EEGFR+F+ G+L + GL+
Sbjct: 183 LKQPD-LAESFRLXSEEGFRSFYDGSLADIIIAGLE 217
>pdb|1J0M|A Chain A, Crystal Structure Of Bacillus Sp. Gl1 Xanthan Lyase That
Acts On Side Chains Of Xanthan
pdb|1J0N|A Chain A, Crystal Structure Of Bacillus Sp. Gl1 Xanthan Lyase That
Acts On Side Chains Of Xanthan
Length = 752
Score = 27.7 bits (60), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 250 SGIASSTATFPIDLVRRRMQLEGAGGRARVYNNGLLGT 287
SGI SSTA PI+ V +L GAG A N L T
Sbjct: 498 SGI-SSTAGIPIETVVDNRKLNGAGDNAWTANGAALST 534
>pdb|2E24|A Chain A, Crystal Structure Of A Mutant (R612a) Of Xanthan Lyase
Length = 752
Score = 27.7 bits (60), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 250 SGIASSTATFPIDLVRRRMQLEGAGGRARVYNNGLLGT 287
SGI SSTA PI+ V +L GAG A N L T
Sbjct: 498 SGI-SSTAGIPIETVVDNRKLNGAGDNAWTANGAALST 534
>pdb|1X1H|A Chain A, Crystal Structure Of Xanthan Lyase (N194a)
pdb|1X1I|A Chain A, Crystal Structure Of Xanthan Lyase (N194a) Complexed With
A Product
pdb|1X1J|A Chain A, Crystal Structure Of Xanthan Lyase (N194a) With A
Substrate
Length = 752
Score = 27.7 bits (60), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 250 SGIASSTATFPIDLVRRRMQLEGAGGRARVYNNGLLGT 287
SGI SSTA PI+ V +L GAG A N L T
Sbjct: 498 SGI-SSTAGIPIETVVDNRKLNGAGDNAWTANGAALST 534
>pdb|2E22|A Chain A, Crystal Structure Of Xanthan Lyase In Complex With Mannose
Length = 752
Score = 27.7 bits (60), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 250 SGIASSTATFPIDLVRRRMQLEGAGGRARVYNNGLLGT 287
SGI SSTA PI+ V +L GAG A N L T
Sbjct: 498 SGI-SSTAGIPIETVVDNRKLNGAGDNAWTANGAALST 534
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,127,238
Number of Sequences: 62578
Number of extensions: 355291
Number of successful extensions: 888
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 866
Number of HSP's gapped (non-prelim): 16
length of query: 336
length of database: 14,973,337
effective HSP length: 99
effective length of query: 237
effective length of database: 8,778,115
effective search space: 2080413255
effective search space used: 2080413255
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)