Query 019730
Match_columns 336
No_of_seqs 214 out of 1760
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 06:15:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019730.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019730hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1okc_A ADP, ATP carrier protei 100.0 1.2E-53 4.1E-58 382.9 26.0 270 57-329 4-297 (297)
2 2lck_A Mitochondrial uncouplin 100.0 1.4E-53 4.9E-58 383.3 25.5 263 63-331 4-288 (303)
3 1okc_A ADP, ATP carrier protei 100.0 2.3E-37 7.9E-42 277.1 19.8 189 143-331 5-203 (297)
4 2lck_A Mitochondrial uncouplin 100.0 7.5E-37 2.6E-41 274.4 17.3 184 148-333 4-196 (303)
5 3tgu_G UQCRQ, mitochondrial ub 30.4 29 0.00098 23.5 2.1 37 296-332 33-69 (81)
6 3tgu_G UQCRQ, mitochondrial ub 20.7 1.4E+02 0.0047 20.1 4.1 41 196-236 32-72 (81)
7 1y9i_A Low temperature require 18.5 1.4E+02 0.0048 23.4 4.3 43 214-256 111-158 (178)
8 1pp9_G Ubiquinol-cytochrome C 15.7 2.1E+02 0.0073 19.1 4.1 41 196-236 32-72 (81)
9 3cx5_H Cytochrome B-C1 complex 14.5 85 0.0029 21.8 1.9 37 295-331 42-78 (93)
10 2bnk_A Early protein GP16.7; D 13.6 1.8E+02 0.006 18.0 2.9 46 256-304 20-65 (67)
No 1
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=1.2e-53 Score=382.87 Aligned_cols=270 Identities=28% Similarity=0.496 Sum_probs=222.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHcCCCccc-ccccccchHHHHHHHHHHhhchhHhhhhhH---------
Q 019730 57 QIGTVQQLLAGGIAGAFSKTCTAPLARLTILFQVQGMHSD-LAALSKPSILREASRIANEEGFRAFWKGNL--------- 126 (336)
Q Consensus 57 ~~~~~~~~~ag~~a~~~~~~~~~Pld~vk~r~Q~~~~~~~-~~~~~~~~~~~~~~~i~~~eG~~gly~G~~--------- 126 (336)
.++.+.++++|++|++++.++++|+|+||+|+|++..... .....+++.++++++++++||++|||||+.
T Consensus 4 ~~~~~~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~ 83 (297)
T 1okc_A 4 ALSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPT 83 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSSCCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhcccccccccccccccHHHHHHHHHhccchhheecccHHHHHHHHHH
Confidence 4567889999999999999999999999999999864221 112356889999999999999999999986
Q ss_pred ------HHHHhhh-ccccCC---ccccchHHHHHHHHHHHHHHHHhhccHHHHHHHHHhccC----ccccccHHHHHHHH
Q 019730 127 ------FLQSVLG-LDNHRE---SASVNLGVHFVGGGLAGMTAASATYPLDLVRTRLAAQRQ----AIYYKGIWHSFQTI 192 (336)
Q Consensus 127 ------~~~~~~~-~~~~~~---~~~~~~~~~~~ag~~ag~~~~~v~~Pld~ik~r~q~~~~----~~~~~~~~~~~~~i 192 (336)
.++.... ...... .........+++|++||+++.++++|+|+||+|+|++.. ...|+++++++++|
T Consensus 84 ~~~~f~~ye~~k~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~~i 163 (297)
T 1okc_A 84 QALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKI 163 (297)
T ss_dssp HHHHHHHHHHHHHHHHTTCCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTCSCSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCCCcCcCCCCHHHHHHHH
Confidence 2222222 111111 111234668899999999999999999999999999843 34689999999999
Q ss_pred HHhhchhHhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHhccCCCCChhHHHhHHHHHHHHHHHhccchHHHHHHHHHhcC
Q 019730 193 CREEGFLGLYKGLGATLLGVGPSIAISFSVYESLRSFWQSYRPNDPTVMVSLACGSLSGIASSTATFPIDLVRRRMQLEG 272 (336)
Q Consensus 193 ~~~~G~~~lyrG~~~~ll~~~~~~~~~~~~y~~lk~~~~~~~~~~~~~~~~~~~g~~ag~~~~~~t~P~dvvktr~q~~~ 272 (336)
+++||+++||||+.+++++++++.+++|.+||.+|+.+.+. .+.+....+++|++||++++++++|+||||+|+|.+.
T Consensus 164 ~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~--~~~~~~~~~~~g~~ag~~a~~~t~P~dvvktr~q~~~ 241 (297)
T 1okc_A 164 FKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDP--KNVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQS 241 (297)
T ss_dssp HHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCGG--GCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhccC--CCccHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhcC
Confidence 99999999999999999999999999999999999977543 2345677899999999999999999999999999986
Q ss_pred CCCCcccccCCHHHHHHHHHHhhcccccccchHHHHhhhhhchhhHHHHHHHHHHHh
Q 019730 273 AGGRARVYNNGLLGTFRYIIQSEGLRGLYRGILPEYYKVVPGVGIVFMTYETLKMLL 329 (336)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~i~~~eG~~~lyrG~~~~~~~~~~~~~i~~~~ye~~~~~l 329 (336)
........|.++++|+++|+++||++|||||+.|+++|. +.++++|.+||.+|+++
T Consensus 242 ~~~~~~~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~-~~~~~~f~~ye~~k~~l 297 (297)
T 1okc_A 242 GRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRG-MGGAFVLVLYDEIKKFV 297 (297)
T ss_dssp TCCGGGCSCSSHHHHHHHHHHHHCGGGGGTTHHHHHHHH-HHHHHHHHHHHTC----
T ss_pred CCCCCCCCCCCHHHHHHHHHHHcCcCeEecchHHHHHhh-ccceeeehHHHHHHhhC
Confidence 543333345999999999999999999999999999996 56789999999998764
No 2
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=1.4e-53 Score=383.26 Aligned_cols=263 Identities=22% Similarity=0.373 Sum_probs=227.6
Q ss_pred HHHHHHHHHHHHHHhhCcHHHHHHHHHcCCCccc----ccccccchHHHHHHHHHHhhchhHhhhhhH------------
Q 019730 63 QLLAGGIAGAFSKTCTAPLARLTILFQVQGMHSD----LAALSKPSILREASRIANEEGFRAFWKGNL------------ 126 (336)
Q Consensus 63 ~~~ag~~a~~~~~~~~~Pld~vk~r~Q~~~~~~~----~~~~~~~~~~~~~~~i~~~eG~~gly~G~~------------ 126 (336)
++++|++|++++.++++|+|+||+|+|++..... .....+++.++++++|+++||+++||||+.
T Consensus 4 ~~~aG~~ag~~~~~~~~Pld~iKtrlQ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i 83 (303)
T 2lck_A 4 KFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFASV 83 (303)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHSSCCTTCCSHHHHCSCSSCSCHHHHHHHHHHHHCHHHHHSSHHHHHHHHHHHHHH
T ss_pred hHHhHHHHHHHHHHHcCcHHHHHHHHHhhhccccccccccCCCCCCHHHHHHHHHHhhCHHHHHcCCHHHHHHHHHHHHH
Confidence 7899999999999999999999999999865321 012356789999999999999999999987
Q ss_pred ---HHHHhhhccccCCccccchHHHHHHHHHHHHHHHHhhccHHHHHHHHHhccC---ccccccHHHHHHHHHHhhchhH
Q 019730 127 ---FLQSVLGLDNHRESASVNLGVHFVGGGLAGMTAASATYPLDLVRTRLAAQRQ---AIYYKGIWHSFQTICREEGFLG 200 (336)
Q Consensus 127 ---~~~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~v~~Pld~ik~r~q~~~~---~~~~~~~~~~~~~i~~~~G~~~ 200 (336)
.+........... ...+....+++|++||+++.++++|+|++|+|+|++.. ...|+++++++++|++++|+++
T Consensus 84 ~f~~ye~~k~~~~~~~-~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~i~~~eG~~g 162 (303)
T 2lck_A 84 RIGLYDSVKQFYTKGS-EHAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRG 162 (303)
T ss_dssp TTTHHHHHHHHHSCCC-SSCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSCCCSSSCCCHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHHhcCC-cCCcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhcccccCCCCCCCCHHHHHHHHHHhcChhh
Confidence 2232222211111 13567789999999999999999999999999999853 3478999999999999999999
Q ss_pred hhhhhhhhhhhhhhhhhHHHHHHHHHHHHHhccCCCCChhHHHhHHHHHHHHHHHhccchHHHHHHHHHhcCCCCCcccc
Q 019730 201 LYKGLGATLLGVGPSIAISFSVYESLRSFWQSYRPNDPTVMVSLACGSLSGIASSTATFPIDLVRRRMQLEGAGGRARVY 280 (336)
Q Consensus 201 lyrG~~~~ll~~~~~~~~~~~~y~~lk~~~~~~~~~~~~~~~~~~~g~~ag~~~~~~t~P~dvvktr~q~~~~~~~~~~~ 280 (336)
||||+.+++++++++.+++|.+||.+|+.+.+......+....+++|++||++++++++|+||||+|+|.+... .
T Consensus 163 lyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~~~~~~~~~~~~~~~g~~ag~~~~~~~~P~dvvktrlq~~~~~-----~ 237 (303)
T 2lck_A 163 LWKGTSPNVARNAIVNCAELVTYDLIKDTLLKANLMTDDLPCHFTSAFGAGFCTTVIASPVDVVKTRYMNSALG-----Q 237 (303)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSS-----S
T ss_pred hhCCccHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhcccc-----c
Confidence 99999999999999999999999999998876544455677889999999999999999999999999998642 2
Q ss_pred cCCHHHHHHHHHHhhcccccccchHHHHhhhhhchhhHHHHHHHHHHHhhc
Q 019730 281 NNGLLGTFRYIIQSEGLRGLYRGILPEYYKVVPGVGIVFMTYETLKMLLSS 331 (336)
Q Consensus 281 ~~~~~~~~~~i~~~eG~~~lyrG~~~~~~~~~~~~~i~~~~ye~~~~~l~~ 331 (336)
|.++++|+++|+++||++|||||+.|+++|.+|.++++|.+||.+|+++.+
T Consensus 238 y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~~p~~~i~f~~ye~~k~~l~~ 288 (303)
T 2lck_A 238 YHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRALMA 288 (303)
T ss_dssp CCSHHHHHHHHHHSSCTHHHHSCCHHHHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred cCCHHHHHHHHHHHcChHHhhccHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 489999999999999999999999999999999999999999999988764
No 3
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=2.3e-37 Score=277.07 Aligned_cols=189 Identities=26% Similarity=0.422 Sum_probs=166.0
Q ss_pred cchHHHHHHHHHHHHHHHHhhccHHHHHHHHHhccC------ccccccHHHHHHHHHHhhchhHhhhhhhhhhhhhhhhh
Q 019730 143 VNLGVHFVGGGLAGMTAASATYPLDLVRTRLAAQRQ------AIYYKGIWHSFQTICREEGFLGLYKGLGATLLGVGPSI 216 (336)
Q Consensus 143 ~~~~~~~~ag~~ag~~~~~v~~Pld~ik~r~q~~~~------~~~~~~~~~~~~~i~~~~G~~~lyrG~~~~ll~~~~~~ 216 (336)
.+....+++|++||+++.++++|+|++|+|+|++.. ...|+++++++++|+++||+++||||+.+++++++++.
T Consensus 5 ~~~~~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~ 84 (297)
T 1okc_A 5 LSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQ 84 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSSCCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhcccccccccccccccHHHHHHHHHhccchhheecccHHHHHHHHHHH
Confidence 345678999999999999999999999999999853 34689999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhcc-CCCCC---hhHHHhHHHHHHHHHHHhccchHHHHHHHHHhcCCCCCcccccCCHHHHHHHHH
Q 019730 217 AISFSVYESLRSFWQSY-RPNDP---TVMVSLACGSLSGIASSTATFPIDLVRRRMQLEGAGGRARVYNNGLLGTFRYII 292 (336)
Q Consensus 217 ~~~~~~y~~lk~~~~~~-~~~~~---~~~~~~~~g~~ag~~~~~~t~P~dvvktr~q~~~~~~~~~~~~~~~~~~~~~i~ 292 (336)
+++|.+||.+|+.+... ...+. .....+++|++||++++++++|+|+||+|+|.+.........|.++++|+++|+
T Consensus 85 ~~~f~~ye~~k~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~~i~ 164 (297)
T 1okc_A 85 ALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIF 164 (297)
T ss_dssp HHHHHHHHHHHHHHHTTCCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTCSCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCCCcCcCCCCHHHHHHHHH
Confidence 99999999999964332 22221 346788999999999999999999999999998653332334589999999999
Q ss_pred HhhcccccccchHHHHhhhhhchhhHHHHHHHHHHHhhc
Q 019730 293 QSEGLRGLYRGILPEYYKVVPGVGIVFMTYETLKMLLSS 331 (336)
Q Consensus 293 ~~eG~~~lyrG~~~~~~~~~~~~~i~~~~ye~~~~~l~~ 331 (336)
++||+++||||+.++++|.+|.++++|.+||.+|+.+.+
T Consensus 165 ~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~ 203 (297)
T 1okc_A 165 KSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPD 203 (297)
T ss_dssp HHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCG
T ss_pred HhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999998754
No 4
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=7.5e-37 Score=274.42 Aligned_cols=184 Identities=27% Similarity=0.449 Sum_probs=166.4
Q ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHhccC---------ccccccHHHHHHHHHHhhchhHhhhhhhhhhhhhhhhhhH
Q 019730 148 HFVGGGLAGMTAASATYPLDLVRTRLAAQRQ---------AIYYKGIWHSFQTICREEGFLGLYKGLGATLLGVGPSIAI 218 (336)
Q Consensus 148 ~~~ag~~ag~~~~~v~~Pld~ik~r~q~~~~---------~~~~~~~~~~~~~i~~~~G~~~lyrG~~~~ll~~~~~~~~ 218 (336)
.+++|++||+++.++++|+|++|+|+|++.. ..+|+++++++++|+++||+++||||+.+++++.+++.++
T Consensus 4 ~~~aG~~ag~~~~~~~~Pld~iKtrlQ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i 83 (303)
T 2lck_A 4 KFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFASV 83 (303)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHSSCCTTCCSHHHHCSCSSCSCHHHHHHHHHHHHCHHHHHSSHHHHHHHHHHHHHH
T ss_pred hHHhHHHHHHHHHHHcCcHHHHHHHHHhhhccccccccccCCCCCCHHHHHHHHHHhhCHHHHHcCCHHHHHHHHHHHHH
Confidence 6899999999999999999999999999854 2468999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCCCCChhHHHhHHHHHHHHHHHhccchHHHHHHHHHhcCCCCCcccccCCHHHHHHHHHHhhccc
Q 019730 219 SFSVYESLRSFWQSYRPNDPTVMVSLACGSLSGIASSTATFPIDLVRRRMQLEGAGGRARVYNNGLLGTFRYIIQSEGLR 298 (336)
Q Consensus 219 ~~~~y~~lk~~~~~~~~~~~~~~~~~~~g~~ag~~~~~~t~P~dvvktr~q~~~~~~~~~~~~~~~~~~~~~i~~~eG~~ 298 (336)
+|.+||.+|+.+.+... ..+....+++|++||++++++++|+|+||+|+|.+...+... .|.+.++|+++|+++||++
T Consensus 84 ~f~~ye~~k~~~~~~~~-~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~-~~~~~~~~~~~i~~~eG~~ 161 (303)
T 2lck_A 84 RIGLYDSVKQFYTKGSE-HAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGR-RYQSTVEAYKTIAREEGIR 161 (303)
T ss_dssp TTTHHHHHHHHHSCCCS-SCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSCCCSS-SCCCHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHhcCCc-CCcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhcccccCCCC-CCCCHHHHHHHHHHhcChh
Confidence 99999999999865422 356778899999999999999999999999999987542222 3489999999999999999
Q ss_pred ccccchHHHHhhhhhchhhHHHHHHHHHHHhhcCC
Q 019730 299 GLYRGILPEYYKVVPGVGIVFMTYETLKMLLSSVP 333 (336)
Q Consensus 299 ~lyrG~~~~~~~~~~~~~i~~~~ye~~~~~l~~~~ 333 (336)
+||||+.++++|.+|.++++|.+||.+|+.+.+..
T Consensus 162 glyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~~~ 196 (303)
T 2lck_A 162 GLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKAN 196 (303)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTT
T ss_pred hhhCCccHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999987643
No 5
>3tgu_G UQCRQ, mitochondrial ubiquinol-cytochrome C reductase UB binding protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_G* 3h1i_G* 3h1h_G* 3h1k_G* 3h1l_G* 3h1j_G* 3l71_G* 3l72_G* 3l73_G* 3l74_G* 3l75_G* 3l70_G*
Probab=30.44 E-value=29 Score=23.49 Aligned_cols=37 Identities=16% Similarity=0.266 Sum_probs=28.9
Q ss_pred cccccccchHHHHhhhhhchhhHHHHHHHHHHHhhcC
Q 019730 296 GLRGLYRGILPEYYKVVPGVGIVFMTYETLKMLLSSV 332 (336)
Q Consensus 296 G~~~lyrG~~~~~~~~~~~~~i~~~~ye~~~~~l~~~ 332 (336)
|+...+|-+...++..+|..++...+|++.++..+..
T Consensus 33 ~i~N~~RR~~~q~l~v~pPfi~~Y~i~~Wa~~~ne~l 69 (81)
T 3tgu_G 33 ALPNVWRRFSSQVFKVAPPFLGAYLLYSWGTQEFERL 69 (81)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHH
Confidence 4555556667778889999999999999998876544
No 6
>3tgu_G UQCRQ, mitochondrial ubiquinol-cytochrome C reductase UB binding protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_G* 3h1i_G* 3h1h_G* 3h1k_G* 3h1l_G* 3h1j_G* 3l71_G* 3l72_G* 3l73_G* 3l74_G* 3l75_G* 3l70_G*
Probab=20.65 E-value=1.4e+02 Score=20.06 Aligned_cols=41 Identities=7% Similarity=0.280 Sum_probs=30.8
Q ss_pred hchhHhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHhccCCC
Q 019730 196 EGFLGLYKGLGATLLGVGPSIAISFSVYESLRSFWQSYRPN 236 (336)
Q Consensus 196 ~G~~~lyrG~~~~ll~~~~~~~~~~~~y~~lk~~~~~~~~~ 236 (336)
+|+...+|-+...++..+|..++.+.+|++.++.......+
T Consensus 32 ~~i~N~~RR~~~q~l~v~pPfi~~Y~i~~Wa~~~ne~l~rK 72 (81)
T 3tgu_G 32 DALPNVWRRFSSQVFKVAPPFLGAYLLYSWGTQEFERLKRK 72 (81)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred hhhhHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHhCC
Confidence 45556666677788888999999999999999876544333
No 7
>1y9i_A Low temperature requirement C protein; structural genomics, protein structure initiative, PSI; 1.80A {Listeria monocytogenes} SCOP: a.195.1.1
Probab=18.50 E-value=1.4e+02 Score=23.39 Aligned_cols=43 Identities=7% Similarity=-0.074 Sum_probs=26.5
Q ss_pred hhhhHHHHHHHHHHHHHhccC-----CCCChhHHHhHHHHHHHHHHHh
Q 019730 214 PSIAISFSVYESLRSFWQSYR-----PNDPTVMVSLACGSLSGIASST 256 (336)
Q Consensus 214 ~~~~~~~~~y~~lk~~~~~~~-----~~~~~~~~~~~~g~~ag~~~~~ 256 (336)
....+.|..||..|....... ..-..+..++++|+.|+++..+
T Consensus 111 ~~gf~~Fr~fDi~KPgpI~~ld~~~~gg~gimlDDivAgi~A~~~~~l 158 (178)
T 1y9i_A 111 SIGFTNYGYIDKVKPGILAKLNEHDGIAVHTFLDDIVGAIAAAAASRL 158 (178)
T ss_dssp GGGHHHHHHHHHHCCTHHHHTTCCCSSCCCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccchhHHhhhcccCCCCcchHHHHHHHHHHHHHHHH
Confidence 355567777888775432211 1223578899999888776543
No 8
>1pp9_G Ubiquinol-cytochrome C reductase complex ubiquino protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.23.13.1 PDB: 1bgy_G* 1be3_G* 1l0n_G* 1ntk_G* 1ntm_G* 1ntz_G* 1nu1_G* 1l0l_G* 1ppj_G* 1sqb_G* 1sqp_G* 1sqq_G* 1sqv_G* 1sqx_G* 2a06_G* 2fyu_G* 2ybb_G* 1bcc_G* 2bcc_G* 3bcc_G* ...
Probab=15.71 E-value=2.1e+02 Score=19.09 Aligned_cols=41 Identities=17% Similarity=0.276 Sum_probs=30.7
Q ss_pred hchhHhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHhccCCC
Q 019730 196 EGFLGLYKGLGATLLGVGPSIAISFSVYESLRSFWQSYRPN 236 (336)
Q Consensus 196 ~G~~~lyrG~~~~ll~~~~~~~~~~~~y~~lk~~~~~~~~~ 236 (336)
+|+...+|-+.-.++..+|..++.+.+|+..++.......+
T Consensus 32 ~~i~n~~RR~~~~~l~v~pPfv~~Y~i~~Wa~~~~e~~~rK 72 (81)
T 1pp9_G 32 KGIPNVLRRTRACILRVAPPFVAFYLVYTWGTQEFEKSKRK 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS
T ss_pred hhhhHHHHHHHhcceeeehhHHHHHHHHHHHHHHHHHHhCC
Confidence 45566677777778888899999999999998876544333
No 9
>3cx5_H Cytochrome B-C1 complex subunit 8; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: f.23.13.1 PDB: 1kb9_H* 1kyo_H* 1p84_H* 1ezv_G* 3cxh_H* 2ibz_G*
Probab=14.46 E-value=85 Score=21.76 Aligned_cols=37 Identities=11% Similarity=0.148 Sum_probs=31.2
Q ss_pred hcccccccchHHHHhhhhhchhhHHHHHHHHHHHhhc
Q 019730 295 EGLRGLYRGILPEYYKVVPGVGIVFMTYETLKMLLSS 331 (336)
Q Consensus 295 eG~~~lyrG~~~~~~~~~~~~~i~~~~ye~~~~~l~~ 331 (336)
.|+...+|-+.-+++..+|..++...+|+..++..+.
T Consensus 42 ~~i~N~~RR~~~q~l~v~pPfv~~Y~i~~Wa~~~~e~ 78 (93)
T 3cx5_H 42 NAVFNSFRRFKSQFLYVLIPAGIYWYWWKNGNEYNEF 78 (93)
T ss_dssp TTSSSCSHHHHTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcchHHHHHHHhcceEEechHhHHHHHHHHHHHHHHH
Confidence 4777788888888899999999999999998887654
No 10
>2bnk_A Early protein GP16.7; DNA-binding protein; 2.9A {Bacillus phage PHI29} SCOP: a.251.1.1 PDB: 2c5r_A 1zae_A
Probab=13.65 E-value=1.8e+02 Score=18.05 Aligned_cols=46 Identities=22% Similarity=0.296 Sum_probs=30.9
Q ss_pred hccchHHHHHHHHHhcCCCCCcccccCCHHHHHHHHHHhhcccccccch
Q 019730 256 TATFPIDLVRRRMQLEGAGGRARVYNNGLLGTFRYIIQSEGLRGLYRGI 304 (336)
Q Consensus 256 ~~t~P~dvvktr~q~~~~~~~~~~~~~~~~~~~~~i~~~eG~~~lyrG~ 304 (336)
-+--|+|+|---. .+........ .++...-|.-|+-|--+-+|||.
T Consensus 20 nIrIP~DIIEdl~-~~~L~te~EV--mnYiEnqR~~WKLEN~KKly~g~ 65 (67)
T 2bnk_A 20 NIRIPSDIIEDLV-NQRLQSEQEV--LNYIETQRTYWKLENQKKLYRGS 65 (67)
T ss_dssp TCCCCHHHHHHHH-TTCCCCSHHH--HHHHHHHHHHHHHHTTSCCCCSC
T ss_pred CCcCcHHHHHHHH-HHhhhhHHHH--HHHHHhhHhHHhhhhhHHHHhcc
Confidence 3567888887654 3333322222 45677778889999999999995
Done!