Query 019731
Match_columns 336
No_of_seqs 167 out of 762
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 06:16:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019731.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019731hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lwt_X Phosphoinositide phosph 100.0 1E-84 3.5E-89 656.4 31.1 303 17-335 8-323 (505)
2 2hzm_A RNA polymerase II media 23.3 49 0.0017 29.0 2.9 75 247-335 133-210 (212)
3 2rbg_A Putative uncharacterize 22.1 1.6E+02 0.0054 23.4 5.3 57 278-334 1-60 (126)
4 1cmb_A Met APO-repressor; DNA- 17.4 55 0.0019 24.7 1.7 14 322-335 52-65 (104)
5 1zrx_A Stomoxyn; helical pepti 14.2 61 0.0021 20.3 1.0 11 296-306 3-13 (42)
6 3cui_A EXO-beta-1,4-glucanase; 10.9 73 0.0025 29.0 0.9 27 291-317 99-126 (315)
7 1m5a_B Insulin B chain; alpha 10.9 1.8E+02 0.0062 17.4 2.3 20 126-145 10-29 (30)
8 1ta3_B Endo-1,4-beta-xylanase; 9.6 86 0.0029 28.6 0.9 49 263-316 78-128 (303)
9 2krb_A Eukaryotic translation 8.8 4E+02 0.014 18.0 4.1 25 296-320 20-44 (81)
10 3r45_C Holliday junction recog 8.3 1.4E+02 0.0049 21.7 1.4 19 292-310 26-44 (81)
No 1
>3lwt_X Phosphoinositide phosphatase SAC1; SAC3/FIG4, lipid metabol endoplasmic reticulum, hydrolase, membrane, transmembrane; 1.96A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-84 Score=656.39 Aligned_cols=303 Identities=30% Similarity=0.499 Sum_probs=270.0
Q ss_pred EEEECCEEEEEeCCC--CCcceEEEECCCCceeeecCCCccccCCCceeeEEEEEEEEEEecCceEEEEEeceEEeeeeC
Q 019731 17 LWEFPDQFVVEPTDG--SSGSALAISRADGSMNLIHEVPECSILRVPKIRTIFGVVGVLKLLAGSYLIVITERECVGSYL 94 (336)
Q Consensus 17 L~~t~d~~ii~~~~~--~~~~~L~Idr~~g~i~~~~~~~~~~~~~~~~~~~~~GilG~i~l~~~~yL~vIt~~~~vg~i~ 94 (336)
..++||+|+|+|.++ ..+.+|.|||.+|++++.+..+. .....+..++||+|+|++.++.||+|||+++.||.|+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~l~i~r~~~~~~~~~~~~~---~~~~~~~~i~GilG~i~l~~~~YlivIT~~~~vg~i~ 84 (505)
T 3lwt_X 8 YVQNADGIFFKLAEGKGTNDAVIHLANQDQGVRVLGAEEF---PVQGEVVKIASLMGFIKLKLNRYAIIANTVEETGRFN 84 (505)
T ss_dssp EEEETTEEEEEESSCCSSCCCEEEEETTTCCEEEECGGGS---CSSSCCEEESEEEEEEEETTEEEEEEEEEEEEEEEET
T ss_pred EEECCCEEEEEECCCCCCCcceEEEEcCCCeEEecccccC---CCcCceeEEEEEEEEEEECCCcEEEEEEccEEEEEEC
Confidence 345999999999763 24678999999999998763221 1223478999999999999999999999999999999
Q ss_pred CccEEEEEeEEEEeCCCCCCCCchhhhhhhHHHHHHHHhhhcCCceEEecCCCccchhhhhcccCCCCCCCcccCCCCCc
Q 019731 95 GHPIYKVASLKILPCDHSLNNSSAEQKKVEAEFSCLLKLAERTPGLYFSYDTNLTLSVQRLNTLGDESKLLPLWRQAEPR 174 (336)
Q Consensus 95 g~~Iy~I~~v~~ipl~~~~~~~~~~~~~~E~~~~~llk~~~~~~~fYfS~~~DLT~s~q~~~~~~~~~~~~~~~~~~d~r 174 (336)
||.||+|++++|||++.+. ...++|.+|+++|+.++++++|||||+||||+++|++..... .+.|+.+|++
T Consensus 85 gh~Iy~I~~~~~ipl~~~~-----~~~~~E~~yl~ll~~~l~s~~FYfS~~yDLT~slQ~~~~~~~----~~~~~~~d~~ 155 (505)
T 3lwt_X 85 GHVFYRVLQHSIVSTKFNS-----RIDSEEAEYIKLLELHLKNSTFYFSYTYDLTNSLQRNEKVGP----AASWKTADER 155 (505)
T ss_dssp TEEEEEEEEEEEEESCTTC-----CCCHHHHHHHHHHHHHHHHCCCEECSSSCTTSCHHHHHHHCS----CCCGGGSCTT
T ss_pred CeEEEEEEEEEEEEecCcc-----ccChhHHHHHHHHHHHhcCCCEEEeCCcCCCcchhhccccCc----cccccCCCCc
Confidence 9999999999999998542 245688899999999999999999999999999999875432 3789999999
Q ss_pred eeecHHhhHHHHhCC-----CCCcchheeecceeEEEEEEcCceEEEEEEEeeeccCCCcccccccCCCCCceeeeEEEE
Q 019731 175 FLWNNYLMEALIDNK-----LDPFLLPVIQGSFHHFQTAIGRDIIDVTLIARRCTRRNGTRMWRRGADSDGYVANFVETE 249 (336)
Q Consensus 175 F~WN~~l~~~~~~~~-----~~~~~~piI~Gfv~~~~~~~~~~~~~~~LISRRS~~raGtRy~~RGiD~~G~vANfVETE 249 (336)
|+||++|+++|++.. .+.|++|+|||||++..+.++++++.++||||||++||||||++||||++||||||||||
T Consensus 156 F~WN~~l~~~l~~~~~~~~~~~~~~~piI~Gfv~~~~~~~~~~~~~~tLISRRS~~raGtRy~~RGidd~G~VANfVETE 235 (505)
T 3lwt_X 156 FFWNHYLTEDLRNFAHQDPRIDSFIQPVIYGYAKTVDAVLNATPIVLGLITRRSIFRAGTRYFRRGVDKDGNVGNFNETE 235 (505)
T ss_dssp TCTTTGGGHHHHHHHTTCGGGGGGCCCCBSSEEEEEEEEETTEEEEEEEEEEECCCCCSSSCCSSSBCTTSCCSCEEEEE
T ss_pred eechHHHHHHHHHhcccCcchhhhhhHhhcCceEEEEEEECCceEEEEEEEEEecccCCccccccCcCCCCCccceeeEE
Confidence 999999999999853 347999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeCC------eeEEEEEeecCcceeeEEccCCcccceEEEecCCCcHHHHHHHHHHHHHhcCCeEEEEcccCCCCch
Q 019731 250 QVVQMNG------FMASFVQVRGSIPFLWEQTVDLTYKPKFEILRAEEAPRVVERHFLDLRKKYGNVLAVDLVNKYQLSY 323 (336)
Q Consensus 250 qIv~~~~------~~~SfvQiRGSVPlfW~Q~~~l~~kP~i~i~~~~~~~~a~~~HF~~l~~~YG~v~~VNLl~~kg~e~ 323 (336)
||++.++ .++||||+||||||||+|.++++|||+|.+.. ++.+||++||++|.++||+++|||||++||+|
T Consensus 236 qIv~~~~~~~~~~~~~SfvQiRGSVPlfW~Q~~~l~~kP~i~i~~--~~~~a~~kHF~~L~~~YG~~~iVNLl~~k~~E- 312 (505)
T 3lwt_X 236 QILLAENPESEKIHVFSFLQTRGSVPIYWAEINNLKYKPNLVLGE--NSLDATKKHFDQQKELYGDNYLVNLVNQKGHE- 312 (505)
T ss_dssp EEEEEECTTTCCEEEEEEEEEEECCCSBSCCCCCSSSCCCCCCCH--HHHHHHHHHHHHHHHHHSEEEEEEECCCSSCC-
T ss_pred EEEEeCCCCCCCccEEEEEEeccccCceeeecCCcCcCCCeeecC--chHHHHHHHHHHHHHHhCCcEEEecccCCCch-
Confidence 9999877 89999999999999999999999999998863 38899999999999999999999999998865
Q ss_pred hHHHHHHHHhhh
Q 019731 324 SSLLCHLLLSAW 335 (336)
Q Consensus 324 ~~~l~~~~~~~~ 335 (336)
..|.++|-.|+
T Consensus 313 -~~L~~~y~~~v 323 (505)
T 3lwt_X 313 -LPVKEGYESVV 323 (505)
T ss_dssp -CHHHHHHHHHH
T ss_pred -hHHHHHHHHHH
Confidence 67888888776
No 2
>2hzm_A RNA polymerase II mediator complex subunit 20; beta barrel, channel, transcription; 2.40A {Saccharomyces cerevisiae} PDB: 3rj1_F 2hzs_A
Probab=23.33 E-value=49 Score=29.03 Aligned_cols=75 Identities=8% Similarity=-0.121 Sum_probs=51.8
Q ss_pred EEEEEEeeCCeeEEEEEeecCcceeeEEccCCcccceEEEecCCCcHHHHHHHHHHHHHhcCC---eEEEEcccCCCCch
Q 019731 247 ETEQVVQMNGFMASFVQVRGSIPFLWEQTVDLTYKPKFEILRAEEAPRVVERHFLDLRKKYGN---VLAVDLVNKYQLSY 323 (336)
Q Consensus 247 ETEqIv~~~~~~~SfvQiRGSVPlfW~Q~~~l~~kP~i~i~~~~~~~~a~~~HF~~l~~~YG~---v~~VNLl~~kg~e~ 323 (336)
|++-.+..-+.++++-..||=.. | +-|.| ++.......||+.+++.||- -++-|-|+.+....
T Consensus 133 ~~~df~VR~~Nvf~~~~fKGlLi----E---iEy~~-------~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~~~~~ 198 (212)
T 2hzm_A 133 ILDGLTVRLVNLFSSTGFKGLLI----E---LQADE-------AGEFETKIAGIEGHLAEIRAKEYKTSSDSLGPDTSNE 198 (212)
T ss_dssp EETTEEEEEEEEEETTEEEEEEE----E---EEESC-------GGGHHHHHHHHHHHHHHTTCCCCEEECCCSSTTCCCH
T ss_pred EecCEEEEEeeEEEcCcceeEEE----E---EEecC-------cchhHHHHHHHHHHHHHcCCCcceeehhhcCCcchhH
Confidence 55555555566777766677431 1 12323 33345567899999999994 35778888888888
Q ss_pred hHHHHHHHHhhh
Q 019731 324 SSLLCHLLLSAW 335 (336)
Q Consensus 324 ~~~l~~~~~~~~ 335 (336)
-..||-.|.+|.
T Consensus 199 ~~dL~~Qy~~~L 210 (212)
T 2hzm_A 199 ICDLAYQYVRAL 210 (212)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 899999999885
No 3
>2rbg_A Putative uncharacterized protein ST0493; hypothetical protein, structural genomics, unknown function, NPPSFA; 1.75A {Sulfolobus tokodaii}
Probab=22.05 E-value=1.6e+02 Score=23.37 Aligned_cols=57 Identities=18% Similarity=0.360 Sum_probs=39.2
Q ss_pred CcccceEEEec-CCCc-HHHHHHHHHHHHHhcCCeEEEEcccCCCC-chhHHHHHHHHhh
Q 019731 278 LTYKPKFEILR-AEEA-PRVVERHFLDLRKKYGNVLAVDLVNKYQL-SYSSLLCHLLLSA 334 (336)
Q Consensus 278 l~~kP~i~i~~-~~~~-~~a~~~HF~~l~~~YG~v~~VNLl~~kg~-e~~~~l~~~~~~~ 334 (336)
+.|||-+.+.+ .+++ ...|++-|.+....=+.-++||.+..-.+ |.-...-||+||-
T Consensus 1 l~~k~i~~lv~v~~E~l~n~fRk~fkD~R~~GskKvviNvis~~~y~e~v~~~REAiLDN 60 (126)
T 2rbg_A 1 MPYKNILTLISVNNDNFENYFRKIFLDVRSSGSKKTTINVFTEIQYQELVTLIREALLEN 60 (126)
T ss_dssp --CCSEEEEEECCGGGHHHHHHHHHHHHHHHTCSEEEEEEECSSCHHHHHHHTHHHHHHT
T ss_pred CCCCceEEEEecchhhHHHHHHHHHHHHHhcCCceEEEEEecCCcHHHHHHHHHHHHHhc
Confidence 35788888765 3344 46789999998777667889999987654 4445555667664
No 4
>1cmb_A Met APO-repressor; DNA-binding regulatory protein; 1.80A {Escherichia coli} SCOP: a.43.1.5 PDB: 1cma_A 1cmc_A* 1mjl_A* 1mj2_A 1mjk_A* 1mjm_A 1mjo_A* 1mjp_A 1mjq_A*
Probab=17.45 E-value=55 Score=24.74 Aligned_cols=14 Identities=43% Similarity=0.785 Sum_probs=10.9
Q ss_pred chhHHHHHHHHhhh
Q 019731 322 SYSSLLCHLLLSAW 335 (336)
Q Consensus 322 e~~~~l~~~~~~~~ 335 (336)
.-+.+||+|||-|.
T Consensus 52 TNSELLCEAFLHA~ 65 (104)
T 1cmb_A 52 TNSELLCEAFLHAF 65 (104)
T ss_dssp SHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHh
Confidence 34578999999884
No 5
>1zrx_A Stomoxyn; helical peptide in TFE, antimicrobial protein, antibiotic; NMR {Synthetic}
Probab=14.25 E-value=61 Score=20.30 Aligned_cols=11 Identities=45% Similarity=0.670 Sum_probs=9.2
Q ss_pred HHHHHHHHHHh
Q 019731 296 VERHFLDLRKK 306 (336)
Q Consensus 296 ~~~HF~~l~~~ 306 (336)
|++||+.+.++
T Consensus 3 frk~fn~~ikk 13 (42)
T 1zrx_A 3 FRKHFNKLVKK 13 (42)
T ss_dssp CHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 68999998875
No 6
>3cui_A EXO-beta-1,4-glucanase; CEX, xylanase, isofagomine inhibitor, TIM barrel, cellulose degradation, glycosidase, hydrolase; HET: X4S; 1.50A {Cellulomonas fimi} PDB: 3cug_A* 3cuh_A* 3cuf_A* 3cuj_A* 1fh9_A* 1fh7_A 1fh8_A 1exp_A* 1fhd_A* 1j01_A* 2exo_A 2xyl_A 2his_A*
Probab=10.91 E-value=73 Score=29.04 Aligned_cols=27 Identities=19% Similarity=0.295 Sum_probs=19.9
Q ss_pred CcHHHHHHHHHHHHHhcCC-eEEEEccc
Q 019731 291 EAPRVVERHFLDLRKKYGN-VLAVDLVN 317 (336)
Q Consensus 291 ~~~~a~~~HF~~l~~~YG~-v~~VNLl~ 317 (336)
+...++.+|...+.++|+. +.....+|
T Consensus 99 ~~~~~~~~~i~~v~~ry~g~v~~WdV~N 126 (315)
T 3cui_A 99 AFESAMVNHVTKVADHFEGKVASWDVVN 126 (315)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCCEEEEEE
T ss_pred HHHHHHHHHHHHHHHHcCCceEEEEeec
Confidence 4457899999999999975 55444444
No 7
>1m5a_B Insulin B chain; alpha helices, beta sheets, 3(10) helices, disulphide bridge hormone-growth factor complex; 1.20A {Sus scrofa} SCOP: g.1.1.1 PDB: 1aph_B 1b18_B 1b19_B 1b2a_B 1b2b_B 1b2c_B 1b2d_B 1b2e_B 1b2f_B 1b2g_B 1bph_B 1cph_B 1dph_B 1b17_B 1mpj_B 1wav_B 1zni_B 2a3g_B 2bn1_B 2bn3_B ...
Probab=10.89 E-value=1.8e+02 Score=17.41 Aligned_cols=20 Identities=15% Similarity=0.267 Sum_probs=13.9
Q ss_pred HHHHHHHhhhcCCceEEecC
Q 019731 126 EFSCLLKLAERTPGLYFSYD 145 (336)
Q Consensus 126 ~~~~llk~~~~~~~fYfS~~ 145 (336)
++.+.|..+--..+||||..
T Consensus 10 ~LVdaL~~vCgdRGF~~~p~ 29 (30)
T 1m5a_B 10 HLVEALYLVCGERGFFYTPK 29 (30)
T ss_dssp HHHHHHHHHHGGGCEEECCC
T ss_pred HHHHHHHHHhccCccccCCC
Confidence 34555666667899999863
No 8
>1ta3_B Endo-1,4-beta-xylanase; beta alpha barrel (XIP-I), beta alpha barrel (xylanase), HYD inhibitor-hydrolase complex; HET: NAG; 1.70A {Emericella nidulans} SCOP: c.1.8.3
Probab=9.59 E-value=86 Score=28.62 Aligned_cols=49 Identities=22% Similarity=0.375 Sum_probs=28.8
Q ss_pred EeecCcceee-EEccCCcccceEEEecCCCcHHHHHHHHHHHHHhcCC-eEEEEcc
Q 019731 263 QVRGSIPFLW-EQTVDLTYKPKFEILRAEEAPRVVERHFLDLRKKYGN-VLAVDLV 316 (336)
Q Consensus 263 QiRGSVPlfW-~Q~~~l~~kP~i~i~~~~~~~~a~~~HF~~l~~~YG~-v~~VNLl 316 (336)
.+||-.++ | +|.|..-..+. ..++-..++.+|...+.++|+. +...+.+
T Consensus 78 ~v~ghtlv-W~~q~P~W~~~~~----~~~~~~~~~~~~i~~v~~rY~g~v~~Wdv~ 128 (303)
T 1ta3_B 78 KVRGHTLV-WHSQLPSWVSSIG----DANTLRSVMTNHINEVVGRYKGKIMHWDVV 128 (303)
T ss_dssp EEEEEEEE-CSSSCCHHHHTCC----CHHHHHHHHHHHHHHHHHHTTTSCSEEEEE
T ss_pred EEEEeecc-ccCCCChhhhcCC----CHHHHHHHHHHHHHHHHHhcCCcceEEEee
Confidence 47888776 6 45443211110 1122347899999999999975 5443443
No 9
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=8.78 E-value=4e+02 Score=18.04 Aligned_cols=25 Identities=8% Similarity=0.094 Sum_probs=18.2
Q ss_pred HHHHHHHHHHhcCCeEEEEcccCCC
Q 019731 296 VERHFLDLRKKYGNVLAVDLVNKYQ 320 (336)
Q Consensus 296 ~~~HF~~l~~~YG~v~~VNLl~~kg 320 (336)
....+.++.+.||.+.-|.+.+..|
T Consensus 20 t~~~l~~~F~~~G~i~~v~i~~~~g 44 (81)
T 2krb_A 20 LKNVIHKIFSKFGKITNDFYPEEDG 44 (81)
T ss_dssp HHHHHHHHHHTTCCEEEEECCCBTT
T ss_pred HHHHHHHHHhhcCCeEEEEecCCCC
Confidence 4556666778999998888885544
No 10
>3r45_C Holliday junction recognition protein; histone fold, centromere, CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens}
Probab=8.29 E-value=1.4e+02 Score=21.68 Aligned_cols=19 Identities=26% Similarity=0.401 Sum_probs=15.7
Q ss_pred cHHHHHHHHHHHHHhcCCe
Q 019731 292 APRVVERHFLDLRKKYGNV 310 (336)
Q Consensus 292 ~~~a~~~HF~~l~~~YG~v 310 (336)
+..-|++|...|+++|+..
T Consensus 26 sr~RFQ~~Mq~lieKYn~P 44 (81)
T 3r45_C 26 SRRRFQRRMQRLIEKYNQP 44 (81)
T ss_dssp HHHHHHHHHHHHHHHHCSC
T ss_pred HHHHHHHHHHHHHHHcCCC
Confidence 3467999999999999853
Done!