BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019733
(336 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|B9DHD7|VAP22_ARATH Vesicle-associated protein 2-2 OS=Arabidopsis thaliana GN=PVA22
PE=1 SV=1
Length = 386
Score = 216 bits (551), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 144/358 (40%), Positives = 200/358 (55%), Gaps = 54/358 (15%)
Query: 1 MAEELLDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKP 60
M LLDIQP L+F ++KKQ++CV+QL N + VAFKVKTTSPKKYCVRPNV ++ P
Sbjct: 1 MNMPLLDIQPRTLQFAVDLKKQTSCVVQLTNTTHHYVAFKVKTTSPKKYCVRPNVGVVAP 60
Query: 61 KAISDFTVTMQAQRVAPPDLQCKDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKL 120
K+ +FTV MQA + PPD+ CKDKFLIQ V T+DEDIT+ MF+K GK++EE KL
Sbjct: 61 KSTCEFTVIMQAFKEPPPDMVCKDKFLIQSTAVSAETTDEDITASMFSKAEGKHIEENKL 120
Query: 121 RVILMSPPQSPVLLPRNGELKQDSSPETSLQKDRALSGVENIPP----GDGV-------- 168
RV L+ P SP L P N KQ + E S+ KDR S E + P G+ V
Sbjct: 121 RVTLVPPSDSPELSPINTP-KQGAVFEDSILKDRLYSQSETLAPPQYEGEIVKEPRMVGH 179
Query: 169 -----AANAEVFETAKF-----------ADELTETKD------------LQWLENAKERD 200
A NA+ +T K A++L TKD + + K+ D
Sbjct: 180 DELKAADNAKELKTPKMATVDFVEDRYTANDLKATKDSYDSSRMAKETGFDPIRSHKDAD 239
Query: 201 ESRAAKDVQMFGTTNVTNKLREAKDV---QTFESSKDIDE--LISAAEDEQSRPAEDASE 255
+ RA K TTN+ +++A D+ Q F + +D IS D D
Sbjct: 240 DGRAIK-----ATTNLDAPMKKAMDLPRDQGFTNGIAVDSEPKISKERDVVQLQKTDGQN 294
Query: 256 LKPAKDILELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHEL 313
+ + + ELKL KD EE+KLK++ ++S+L++A+ TI KLME R ++++ + L+HEL
Sbjct: 295 V---RGLDELKLVKDIEEMKLKVDALESKLKQADSTISKLMEERSISSQHRQSLQHEL 349
>sp|Q9SHC8|VAP12_ARATH Vesicle-associated protein 1-2 OS=Arabidopsis thaliana GN=PVA12
PE=1 SV=1
Length = 239
Score = 171 bits (433), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 90/191 (47%), Positives = 125/191 (65%), Gaps = 4/191 (2%)
Query: 1 MAEELLDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKP 60
M+ ELL I P++L+F FE+KKQ +C + LGNK+D VAFKVKTT+PKKYCVRPN ++ P
Sbjct: 1 MSNELLTIDPVDLQFPFELKKQISCSLYLGNKTDNYVAFKVKTTNPKKYCVRPNTGVVHP 60
Query: 61 KAISDFTVTMQAQRVAPPDLQCKDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKL 120
++ S+ VTMQAQ+ AP DLQCKDKFL+Q +V G + +D+T +MF+K++G VEE KL
Sbjct: 61 RSSSEVLVTMQAQKEAPADLQCKDKFLLQCVVASPGATPKDVTHEMFSKEAGHRVEETKL 120
Query: 121 RVILMSPPQSPVLLPRNGELKQDSSPETSLQKDRALSGVENIP--PGDGVAANAEVFETA 178
RV+ ++PP+ P + R G ++ SSP S+ + S P D V A E
Sbjct: 121 RVVYVAPPRPPSPV-REGS-EEGSSPRASVSDNGNASDFTAAPRFSADRVDAQDNSSEAR 178
Query: 179 KFADELTETKD 189
+LTE K+
Sbjct: 179 ALVTKLTEEKN 189
>sp|Q8VZ95|VAP11_ARATH Vesicle-associated protein 1-1 OS=Arabidopsis thaliana GN=PVA11
PE=1 SV=1
Length = 256
Score = 160 bits (406), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 74/147 (50%), Positives = 107/147 (72%), Gaps = 2/147 (1%)
Query: 4 ELLDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKAI 63
ELL ++PL+L+F FE+KKQ +C + L NK+D VAFKVKTT+PKKYCVRPN ++ P++
Sbjct: 21 ELLTVEPLDLQFPFELKKQISCSLYLTNKTDNNVAFKVKTTNPKKYCVRPNTGVVLPRST 80
Query: 64 SDFTVTMQAQRVAPPDLQCKDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVI 123
+ VTMQAQ+ AP D+QCKDKFL+QG++ G + +++T +MF+K++G VEE KLRV
Sbjct: 81 CEVLVTMQAQKEAPSDMQCKDKFLLQGVIASPGVTAKEVTPEMFSKEAGHRVEETKLRVT 140
Query: 124 LMSPPQSPVLLPRNGELKQDSSPETSL 150
++PP+ P + E + SSP S+
Sbjct: 141 YVAPPRPPSPVHEGSE--EGSSPRASV 165
>sp|Q84WW5|VAP13_ARATH Vesicle-associated protein 1-3 OS=Arabidopsis thaliana GN=PVA13
PE=2 SV=1
Length = 239
Score = 155 bits (392), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 76/148 (51%), Positives = 108/148 (72%), Gaps = 4/148 (2%)
Query: 4 ELLDIQPLELKFTFEVKKQSTCVIQLGNKSD-QCVAFKVKTTSPKKYCVRPNVSIIKPKA 62
+L++I P ELKF FE+KKQS+C +QL NK+ QCVAFKVKTT+P+KYCVRPN ++ P
Sbjct: 5 DLVNIHPTELKFPFELKKQSSCSMQLTNKTTTQCVAFKVKTTNPRKYCVRPNTGVVLPGD 64
Query: 63 ISDFTVTMQAQRVAPPDLQCKDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRV 122
+ TVTMQAQ+ AP D+QCKDKFL+Q +VV GT+ +++ ++MF K++G+ +E+ KLRV
Sbjct: 65 SCNVTVTMQAQKEAPLDMQCKDKFLVQTVVVSDGTTSKEVLAEMFNKEAGRVIEDFKLRV 124
Query: 123 ILMSPPQSPVLLPRNGELKQDSSPETSL 150
+ + P P +P E + +SP SL
Sbjct: 125 VYI-PANPPSPVPEGSE--EGNSPMASL 149
>sp|Q9LVU1|VAP21_ARATH Vesicle-associated protein 2-1 OS=Arabidopsis thaliana GN=PVA21
PE=2 SV=1
Length = 220
Score = 138 bits (347), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 67/124 (54%), Positives = 89/124 (71%)
Query: 4 ELLDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKAI 63
+L+ IQP ELKF FE++KQS C +++ NK++ VAFKVKTTSPKKY VRPN +I+P
Sbjct: 8 QLISIQPDELKFLFELEKQSYCDLKVANKTENYVAFKVKTTSPKKYFVRPNTGVIQPWDS 67
Query: 64 SDFTVTMQAQRVAPPDLQCKDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVI 123
VT+QAQR PPD+QCKDKFL+Q +VP T +++ D F KDSGK + E KL+V
Sbjct: 68 CIIRVTLQAQREYPPDMQCKDKFLLQSTIVPPHTDVDELPQDTFTKDSGKTLTECKLKVS 127
Query: 124 LMSP 127
++P
Sbjct: 128 YITP 131
>sp|O82213|VAP31_ARATH Vesicle-associated protein 3-1 OS=Arabidopsis thaliana GN=PVA31
PE=3 SV=1
Length = 149
Score = 129 bits (323), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 61/119 (51%), Positives = 85/119 (71%)
Query: 4 ELLDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKAI 63
ELL+I+P+ L+F FE+KKQ +C + L NK+D VAFKVKTT+ YCVRPN +I PK+
Sbjct: 5 ELLEIEPMYLQFPFELKKQMSCSLYLTNKTDNNVAFKVKTTNRNNYCVRPNYGLILPKST 64
Query: 64 SDFTVTMQAQRVAPPDLQCKDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRV 122
VTMQAQ+ P D+Q +KF+IQ ++ G + +++T +MF+K+SG VEE KLRV
Sbjct: 65 CKVLVTMQAQKEVPSDMQSFEKFMIQSVLASPGVTAKEVTREMFSKESGHVVEETKLRV 123
>sp|Q9SYC9|VAP14_ARATH Vesicle-associated protein 1-4 OS=Arabidopsis thaliana GN=PVA14
PE=2 SV=1
Length = 571
Score = 128 bits (322), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 65/153 (42%), Positives = 102/153 (66%), Gaps = 2/153 (1%)
Query: 1 MAEELLDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKP 60
M++ELL I P++++F E+ K+ +C + L NK++ VAFK KTT+ KKY VRPNV ++ P
Sbjct: 172 MSDELLIIDPVDVQFPIELNKKVSCSLNLTNKTENYVAFKAKTTNAKKYYVRPNVGVVLP 231
Query: 61 KAISDFTVTMQAQRVAPPDLQCKDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKL 120
++ + V MQA + AP D+QC+DK L Q VV T+ +D+TS+MF+K++G EE +L
Sbjct: 232 RSSCEVLVIMQALKEAPADMQCRDKLLFQCKVVEPETTAKDVTSEMFSKEAGHPAEETRL 291
Query: 121 RVILMSPPQSPVLLPRNGELKQDSSPETSLQKD 153
+V+ ++PPQ P P ++ SSP S+ +
Sbjct: 292 KVMYVTPPQPPS--PVQEGTEEGSSPRASVSDN 322
Score = 128 bits (322), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 70/169 (41%), Positives = 106/169 (62%), Gaps = 7/169 (4%)
Query: 3 EELLDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKA 62
+ELL ++++F E+ KQ +C + L NK+D VAFK +TT PK YCV+P+V ++ P++
Sbjct: 4 DELLTFDHVDIRFPIELNKQGSCSLNLTNKTDNYVAFKAQTTKPKMYCVKPSVGVVLPRS 63
Query: 63 ISDFTVTMQAQRVAPPDLQCKDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRV 122
+ V MQA + AP D QCKDK L Q VV GT D+++TS+MF+K++G VEE ++
Sbjct: 64 SCEVLVVMQALKEAPADRQCKDKLLFQCKVVEPGTMDKEVTSEMFSKEAGHRVEETIFKI 123
Query: 123 ILMSP--PQSPVLLPRNGELKQDSSPETSLQKDRALSGVENIPPGDGVA 169
I ++P PQSPV + G L+ SSP S+ D+ + + P G+
Sbjct: 124 IYVAPPQPQSPV---QEG-LEDGSSPSASVS-DKGNASEVFVGPSVGIV 167
>sp|O60119|YH75_SCHPO Vesicle-associated membrane protein-associated protein C16G5.05c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC16G5.05c PE=1 SV=1
Length = 383
Score = 76.3 bits (186), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 84/166 (50%), Gaps = 13/166 (7%)
Query: 12 ELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKAISDFTVTMQ 71
EL F S +I + N + + V FKVKTT+PK YCVRPN I+PK+ + V +Q
Sbjct: 8 ELFFYPPFTTMSKELISVHNPNPEPVIFKVKTTAPKHYCVRPNSGKIEPKSTVNVQVLLQ 67
Query: 72 AQRVAP-PDLQCKDKFLIQGIVVPFGTSDEDITSDMF-----AKDSGKYVEEKKLRVILM 125
A + P PD +C+DKFLIQ + + G +D + + G+ + ++K+R +
Sbjct: 68 AMKEEPAPDFKCRDKFLIQSMAI--GDADTSNVENYHEFWTEMEKQGRSIFDRKIRCVYS 125
Query: 126 S--PPQSPVLLPRNGELKQDSSPETSLQKDRALSGVENIPPGDGVA 169
+ PPQS + E S+P S++ L+ P GV+
Sbjct: 126 TKQPPQS---ADKQVENTSTSNPPVSVEGSENLASSVGGPTAVGVS 168
>sp|P40075|SCS2_YEAST Vesicle-associated membrane protein-associated protein SCS2
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=SCS2 PE=1 SV=3
Length = 244
Score = 73.2 bits (178), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/127 (36%), Positives = 71/127 (55%), Gaps = 6/127 (4%)
Query: 6 LDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKAISD 65
++I P L + + +QST + N SDQ +AFKVKTT+PK YCVRPN +++ P
Sbjct: 4 VEISPDVLVYKSPLTEQSTEYASISNNSDQTIAFKVKTTAPKFYCVRPNAAVVAPGETIQ 63
Query: 66 FTVTMQAQRVAP-PDLQCKDKFLIQGIVVPF---GTSDEDITSDMFAKDSGKYVEEKKLR 121
V P D +C+DKFL+ + P+ G + D+ SD+ A+ + + KK++
Sbjct: 64 VQVIFLGLTEEPAADFKCRDKFLVITLPSPYDLNGKAVADVWSDLEAEFKQQAI-SKKIK 122
Query: 122 V-ILMSP 127
V L+SP
Sbjct: 123 VKYLISP 129
>sp|A2VDZ9|VAPB_BOVIN Vesicle-associated membrane protein-associated protein B OS=Bos
taurus GN=VAPB PE=2 SV=1
Length = 243
Score = 71.6 bits (174), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 40/99 (40%), Positives = 59/99 (59%), Gaps = 2/99 (2%)
Query: 2 AEELLDIQP-LELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKP 60
E++L ++P ELKF T ++LGN +D+ V FKVKTT+P++YCVRPN II
Sbjct: 4 VEQVLSLEPQHELKFRGPFTDVVTTNLKLGNPTDRNVCFKVKTTAPRRYCVRPNSGIIDA 63
Query: 61 KAISDFTVTMQAQRVAPPDLQCKDKFLIQGIVVPFGTSD 99
A + +V +Q P + + K KF++Q + P TSD
Sbjct: 64 GASINVSVMLQPFDYDPNE-KSKHKFMVQSMFAPTDTSD 101
>sp|A5GFS8|VAPB_PIG Vesicle-associated membrane protein-associated protein B OS=Sus
scrofa GN=VAPB PE=3 SV=1
Length = 243
Score = 71.2 bits (173), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 40/99 (40%), Positives = 59/99 (59%), Gaps = 2/99 (2%)
Query: 2 AEELLDIQP-LELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKP 60
E++L ++P ELKF T ++LGN +D+ V FKVKTT+P++YCVRPN II
Sbjct: 4 VEQVLSLEPQHELKFRGPFTDVVTTNLKLGNPTDRNVCFKVKTTAPRRYCVRPNSGIIDA 63
Query: 61 KAISDFTVTMQAQRVAPPDLQCKDKFLIQGIVVPFGTSD 99
A + +V +Q P + + K KF++Q + P TSD
Sbjct: 64 GASINVSVMLQPFDYDPNE-KSKHKFMVQSMFAPADTSD 101
>sp|O95292|VAPB_HUMAN Vesicle-associated membrane protein-associated protein B/C OS=Homo
sapiens GN=VAPB PE=1 SV=3
Length = 243
Score = 70.9 bits (172), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/99 (40%), Positives = 59/99 (59%), Gaps = 2/99 (2%)
Query: 2 AEELLDIQP-LELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKP 60
E++L ++P ELKF T ++LGN +D+ V FKVKTT+P++YCVRPN II
Sbjct: 4 VEQVLSLEPQHELKFRGPFTDVVTTNLKLGNPTDRNVCFKVKTTAPRRYCVRPNSGIIDA 63
Query: 61 KAISDFTVTMQAQRVAPPDLQCKDKFLIQGIVVPFGTSD 99
A + +V +Q P + + K KF++Q + P TSD
Sbjct: 64 GASINVSVMLQPFDYDPNE-KSKHKFMVQSMFAPTDTSD 101
>sp|Q9Z269|VAPB_RAT Vesicle-associated membrane protein-associated protein B OS=Rattus
norvegicus GN=Vapb PE=1 SV=3
Length = 243
Score = 70.5 bits (171), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 59/98 (60%), Gaps = 2/98 (2%)
Query: 3 EELLDIQP-LELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPK 61
E++L ++P ELKF T ++LGN +D+ V FKVKTT+P++YCVRPN +I
Sbjct: 5 EQVLSLEPQHELKFRGPFTDVVTTNLKLGNPTDRNVCFKVKTTAPRRYCVRPNSGVIDAG 64
Query: 62 AISDFTVTMQAQRVAPPDLQCKDKFLIQGIVVPFGTSD 99
A + +V +Q P + + K KF++Q + P TSD
Sbjct: 65 ASLNVSVMLQPFDYDPNE-KSKHKFMVQSMFAPPDTSD 101
>sp|Q5R601|VAPA_PONAB Vesicle-associated membrane protein-associated protein A OS=Pongo
abelii GN=VAPA PE=2 SV=2
Length = 249
Score = 69.7 bits (169), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/90 (42%), Positives = 52/90 (57%), Gaps = 1/90 (1%)
Query: 10 PLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKAISDFTVT 69
P +LKF T ++L N SD+ V FKVKTT+P++YCVRPN II P + +V
Sbjct: 20 PTDLKFKGPFTDVVTTNLKLRNPSDRKVCFKVKTTAPRRYCVRPNSGIIDPGSTVTVSVM 79
Query: 70 MQAQRVAPPDLQCKDKFLIQGIVVPFGTSD 99
+Q P+ + K KF++Q I P TSD
Sbjct: 80 LQPFDYD-PNEKSKHKFMVQTIFAPPNTSD 108
>sp|Q9P0L0|VAPA_HUMAN Vesicle-associated membrane protein-associated protein A OS=Homo
sapiens GN=VAPA PE=1 SV=3
Length = 249
Score = 69.7 bits (169), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/90 (42%), Positives = 52/90 (57%), Gaps = 1/90 (1%)
Query: 10 PLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKAISDFTVT 69
P +LKF T ++L N SD+ V FKVKTT+P++YCVRPN II P + +V
Sbjct: 20 PTDLKFKGPFTDVVTTNLKLRNPSDRKVCFKVKTTAPRRYCVRPNSGIIDPGSTVTVSVM 79
Query: 70 MQAQRVAPPDLQCKDKFLIQGIVVPFGTSD 99
+Q P+ + K KF++Q I P TSD
Sbjct: 80 LQPFDYD-PNEKSKHKFMVQTIFAPPNTSD 108
>sp|Q9QY76|VAPB_MOUSE Vesicle-associated membrane protein-associated protein B OS=Mus
musculus GN=Vapb PE=2 SV=3
Length = 243
Score = 68.9 bits (167), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 58/98 (59%), Gaps = 2/98 (2%)
Query: 3 EELLDIQP-LELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPK 61
E++L ++P ELKF T ++LGN +D+ V FKVKTT P++YCVRPN +I
Sbjct: 5 EQVLSLEPQHELKFRGPFTDVVTTNLKLGNPTDRNVCFKVKTTVPRRYCVRPNSGVIDAG 64
Query: 62 AISDFTVTMQAQRVAPPDLQCKDKFLIQGIVVPFGTSD 99
A + +V +Q P + + K KF++Q + P TSD
Sbjct: 65 ASLNVSVMLQPFDYDPNE-KSKHKFMVQSMFAPPDTSD 101
>sp|Q9WV55|VAPA_MOUSE Vesicle-associated membrane protein-associated protein A OS=Mus
musculus GN=Vapa PE=1 SV=2
Length = 249
Score = 68.9 bits (167), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 38/90 (42%), Positives = 52/90 (57%), Gaps = 1/90 (1%)
Query: 10 PLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKAISDFTVT 69
P +LKF T ++L N SD+ V FKVKTT+P++YCVRPN II P +I +V
Sbjct: 20 PSDLKFKGPFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGIIDPGSIVTVSVM 79
Query: 70 MQAQRVAPPDLQCKDKFLIQGIVVPFGTSD 99
+Q P+ + K KF++Q I P SD
Sbjct: 80 LQPFDYD-PNEKSKHKFMVQTIFAPPNISD 108
>sp|Q9Z270|VAPA_RAT Vesicle-associated membrane protein-associated protein A OS=Rattus
norvegicus GN=Vapa PE=1 SV=3
Length = 249
Score = 68.6 bits (166), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 37/90 (41%), Positives = 52/90 (57%), Gaps = 1/90 (1%)
Query: 10 PLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKAISDFTVT 69
P +LKF T ++L N SD+ V FKVKTT+P++YCVRPN +I P +I +V
Sbjct: 20 PSDLKFKGPFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGVIDPGSIVTVSVM 79
Query: 70 MQAQRVAPPDLQCKDKFLIQGIVVPFGTSD 99
+Q P+ + K KF++Q I P SD
Sbjct: 80 LQPFDYD-PNEKSKHKFMVQTIFAPPNISD 108
>sp|Q0VCY1|VAPA_BOVIN Vesicle-associated membrane protein-associated protein A OS=Bos
taurus GN=VAPA PE=2 SV=1
Length = 249
Score = 65.9 bits (159), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/90 (41%), Positives = 50/90 (55%), Gaps = 1/90 (1%)
Query: 10 PLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKAISDFTVT 69
P +LKF T ++L N SD+ V FKVKTT+P++YCVRPN II P +V
Sbjct: 20 PTDLKFKGPFTDVVTTNLKLRNPSDRKVCFKVKTTAPRRYCVRPNSGIIDPGLTVTVSVM 79
Query: 70 MQAQRVAPPDLQCKDKFLIQGIVVPFGTSD 99
+Q P+ + K KF++Q I P SD
Sbjct: 80 LQPFDYD-PNEKSKHKFMVQTIFAPPNISD 108
>sp|Q16943|VP33_APLCA Vesicle-associated membrane protein/synaptobrevin-binding protein
OS=Aplysia californica PE=2 SV=1
Length = 260
Score = 63.5 bits (153), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 54/93 (58%), Gaps = 2/93 (2%)
Query: 3 EELLDIQPL-ELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPK 61
E+ L ++P EL+F T ++L N +D+ + FKVKTT+PK+YCVRPN I++PK
Sbjct: 5 EQALILEPAGELRFKGPFTDVVTADLKLSNPTDRRICFKVKTTAPKRYCVRPNSGILEPK 64
Query: 62 AISDFTVTMQAQRVAPPDLQCKDKFLIQGIVVP 94
V +Q P+ + K KF++Q + P
Sbjct: 65 TSIAVAVMLQPFNYD-PNEKNKHKFMVQSMYAP 96
>sp|Q10484|YDFC_SCHPO Uncharacterized protein C17C9.12 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC17C9.12 PE=1 SV=2
Length = 319
Score = 62.0 bits (149), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 58/107 (54%), Gaps = 2/107 (1%)
Query: 25 CVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKAISDFTVTMQAQRVAP-PDLQCK 83
C ++L N + + FKVKTT+PK+YCVRPN I+ + V +Q P P +C+
Sbjct: 21 CDLELRNTAPYPIGFKVKTTAPKQYCVRPNGGRIEANSAVSVEVILQPLDHEPAPGTKCR 80
Query: 84 DKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVILMSPPQS 130
DKFL+Q + DI +D++ + S + E+K+R + P +
Sbjct: 81 DKFLVQSTELKPELQGMDI-ADIWTQVSKANISERKIRCVYSEGPST 126
>sp|Q6Q595|SCS22_YEAST Vesicle-associated membrane protein-associated protein SCS22
OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=SCS22 PE=1 SV=2
Length = 175
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 53/96 (55%), Gaps = 11/96 (11%)
Query: 6 LDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKAISD 65
+ I P +L F + KQST I+L N ++ V FKV+T++P KYCVRPNV+II
Sbjct: 1 MRIVPEKLVFKAPLNKQSTEYIKLENDGEKRVIFKVRTSAPTKYCVRPNVAIIGAHE--- 57
Query: 66 FTVTMQAQRVAPPDL-------QCKDKFLIQGIVVP 94
+V +Q + P Q +DKFLI + +P
Sbjct: 58 -SVNVQIVFLGLPKSTADDEMDQKRDKFLIVTLPIP 92
>sp|Q8VYN2|VAP42_ARATH Vesicle-associated protein 4-2 OS=Arabidopsis thaliana GN=PVA42
PE=1 SV=1
Length = 295
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 62/133 (46%), Gaps = 14/133 (10%)
Query: 6 LDIQPLE-LKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKAIS 64
L + P E L F +E KQ I++ N S VAFK +TT+PK +RP +I+ P
Sbjct: 108 LKLDPSEKLYFPYEPGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAP---G 164
Query: 65 DFTVTMQAQRVAPP-------DLQCKDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEE 117
+ + + V PP D + + KF I + V D ++F + +E
Sbjct: 165 ETIIATVFKFVEPPENNEKPMDQRSRVKFKIMSLKV---KGPMDYVPELFDEQKDDVSKE 221
Query: 118 KKLRVILMSPPQS 130
+ LRVI + P +S
Sbjct: 222 QILRVIFLDPERS 234
>sp|Q7V9F9|RS6_PROMA 30S ribosomal protein S6 OS=Prochlorococcus marinus (strain SARG /
CCMP1375 / SS120) GN=rpsF PE=3 SV=1
Length = 210
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 55/93 (59%), Gaps = 9/93 (9%)
Query: 183 ELTETKDLQWLENAKERDESRAAKDVQMFGTTNVTNKLREAKDVQTFESSKDIDELISAA 242
E+ E KD + ++ AK+ E + AKD T +++EAKD + + +KD E+ A
Sbjct: 124 EVKEAKDTKEVKEAKDTKEVKEAKD---------TKEVKEAKDTKEVKEAKDTKEVKEAK 174
Query: 243 EDEQSRPAEDASELKPAKDILELKLAKDFEELK 275
+ ++ + A+D E+K AKD E+K AKD +E+K
Sbjct: 175 DTKEVKEAKDTKEVKEAKDTKEVKEAKDTKEVK 207
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 47/81 (58%)
Query: 195 NAKERDESRAAKDVQMFGTTNVTNKLREAKDVQTFESSKDIDELISAAEDEQSRPAEDAS 254
N + E + AKD + T +++EAKD + + +KD E+ A + ++ + A+D
Sbjct: 118 NENDTKEVKEAKDTKEVKEAKDTKEVKEAKDTKEVKEAKDTKEVKEAKDTKEVKEAKDTK 177
Query: 255 ELKPAKDILELKLAKDFEELK 275
E+K AKD E+K AKD +E+K
Sbjct: 178 EVKEAKDTKEVKEAKDTKEVK 198
Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 42/70 (60%)
Query: 206 KDVQMFGTTNVTNKLREAKDVQTFESSKDIDELISAAEDEQSRPAEDASELKPAKDILEL 265
K+ N T +++EAKD + + +KD E+ A + ++ + A+D E+K AKD E+
Sbjct: 111 KEASTTNNENDTKEVKEAKDTKEVKEAKDTKEVKEAKDTKEVKEAKDTKEVKEAKDTKEV 170
Query: 266 KLAKDFEELK 275
K AKD +E+K
Sbjct: 171 KEAKDTKEVK 180
Score = 39.3 bits (90), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 47/89 (52%), Gaps = 9/89 (10%)
Query: 178 AKFADELTETKDLQWLENAKERDESRAAKDVQMFGTTNVTNKLREAKDVQTFESSKDIDE 237
AK E+ E KD + ++ AK+ E + AKD + T +++EAKD + + +KD E
Sbjct: 128 AKDTKEVKEAKDTKEVKEAKDTKEVKEAKDTKEVKEAKDTKEVKEAKDTKEVKEAKDTKE 187
Query: 238 LISAAEDEQSRPAEDASELKPAKDILELK 266
+ + A+D E+K AKD E+K
Sbjct: 188 V---------KEAKDTKEVKEAKDTKEVK 207
>sp|Q8NHP6|MSPD2_HUMAN Motile sperm domain-containing protein 2 OS=Homo sapiens GN=MOSPD2
PE=1 SV=1
Length = 518
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 43/87 (49%), Gaps = 5/87 (5%)
Query: 5 LLDIQPLE-LKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKAI 63
LL I P E L F + +I L N + VAFKV+TT+P+KY V+P+ S P A
Sbjct: 327 LLHISPAEELYFGSTESGEKKTLIVLTNVTKNIVAFKVRTTAPEKYRVKPSNSSCDPGAS 386
Query: 64 SDFTVTMQAQRVAPPDLQCKDKFLIQG 90
D V+ + +D+FLI
Sbjct: 387 VDIVVSPHGGLT----VSAQDRFLIMA 409
>sp|Q9CWP6|MSPD2_MOUSE Motile sperm domain-containing protein 2 OS=Mus musculus GN=Mospd2
PE=1 SV=2
Length = 518
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 43/87 (49%), Gaps = 5/87 (5%)
Query: 5 LLDIQPLE-LKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKAI 63
LL I P E L F + +I L N + VAFKV+TT+P+KY V+P+ S P A
Sbjct: 327 LLHISPAEELYFGSIESGEKKTLIVLTNVTKNIVAFKVRTTAPEKYRVKPSNSSCDPGAS 386
Query: 64 SDFTVTMQAQRVAPPDLQCKDKFLIQG 90
D V+ + +D+FLI
Sbjct: 387 IDIIVSPHGGLT----VSAQDRFLIMA 409
>sp|Q8LPQ7|VAP43_ARATH Vesicle-associated protein 4-3 OS=Arabidopsis thaliana GN=PVA43
PE=2 SV=1
Length = 287
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 56/123 (45%), Gaps = 13/123 (10%)
Query: 12 ELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKAISDFTVTMQ 71
+L F +E KQ I++ N S VAFK +TT PK +RP +I+ P + +
Sbjct: 107 KLYFPYEPGKQVRSAIKIKNTSKSHVAFKFQTTVPKSCFMRPAGAILAP---GEEIIATV 163
Query: 72 AQRVAPPDLQCKD-------KFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVIL 124
+ V PP+ K KF I + + T D ++F + EE+ +RV+
Sbjct: 164 FKFVEPPENNEKPMEQKSGVKFKIMSLKMKVPT---DYMPELFEEQKDHVSEEQVMRVVF 220
Query: 125 MSP 127
+ P
Sbjct: 221 LDP 223
>sp|Q1ECE0|VAP41_ARATH Vesicle-associated protein 4-1 OS=Arabidopsis thaliana GN=PVA41
PE=2 SV=1
Length = 266
Score = 42.0 bits (97), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 52/118 (44%), Gaps = 8/118 (6%)
Query: 13 LKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKP-----KAISDFT 67
L F +E KQ I+L N S AFK +TT+PK +RP ++ P + F
Sbjct: 85 LYFPYEPGKQVRSAIKLKNTSKSHTAFKFQTTAPKSCYMRPPGGVLAPGESVFATVFKFV 144
Query: 68 VTMQAQRVAPPDLQCKDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVILM 125
+ P + + K KF I + V G + ++F + + E+ LRVI +
Sbjct: 145 EHPENNEKQPLNQKSKVKFKIMSLKVKPGV---EYVPELFDEQKDQVAVEQVLRVIFI 199
>sp|Q7MUZ8|FTHS_PORGI Formate--tetrahydrofolate ligase OS=Porphyromonas gingivalis
(strain ATCC BAA-308 / W83) GN=fhs PE=3 SV=1
Length = 555
Score = 33.5 bits (75), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 40/69 (57%), Gaps = 3/69 (4%)
Query: 249 PAEDASELKPAKDILE-LKLAKDFEELKLKL-NVMDSQLRE-AEHTIRKLMEARKLATRE 305
P + ++ PA +I+ L LAKDFE+L+ +L N++ +E A T++ L A +A
Sbjct: 188 PRQTGFDITPASEIMAILCLAKDFEDLRSRLENILLGYTKEGAPFTVKDLGIAGSIAVLL 247
Query: 306 KDMLKHELM 314
KD +K L+
Sbjct: 248 KDAIKPNLV 256
>sp|Q9UTL9|YIV5_SCHPO Uncharacterized ATP-dependent helicase C144.05
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAC144.05 PE=3 SV=1
Length = 1375
Score = 33.1 bits (74), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 5/74 (6%)
Query: 182 DELTETKDLQWLENAKERDESRAAKDVQMFGTTNVTNKLREAKDVQT--FESSKDIDEL- 238
D+ E +D ++L +ER+E+R D Q N+ ++L +A + T FE+SK+++E
Sbjct: 877 DKQAEERDKKYLLYFEEREEARPKAD-QYGSLINIVSRLLDASNRSTSSFETSKNMEEYE 935
Query: 239 -ISAAEDEQSRPAE 251
I A EQSR +
Sbjct: 936 RIDAMAKEQSRICQ 949
>sp|Q0WPJ7|RF298_ARATH Putative E3 ubiquitin-protein ligase RF298 OS=Arabidopsis thaliana
GN=RF298 PE=2 SV=1
Length = 814
Score = 32.7 bits (73), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 31/57 (54%)
Query: 251 EDASELKPAKDILELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKD 307
E+A E + K +LE K E++L LN +QL +TIR+L + L RE++
Sbjct: 515 EEAEEFRKEKQLLEENTIKRRSEMELALNNATNQLERTNNTIRRLELEQSLLKRERE 571
>sp|P04146|COPIA_DROME Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3
Length = 1409
Score = 31.6 bits (70), Expect = 8.1, Method: Composition-based stats.
Identities = 29/128 (22%), Positives = 55/128 (42%), Gaps = 23/128 (17%)
Query: 147 ETSLQKDRALSGVENIPPGDGVAANAEVFETAKFADELTETKDLQWLENAKERDESRAAK 206
ET KD S +N P + ++ +T +F +E E ++Q+L+++KE +
Sbjct: 717 ETVFLKDSKESENKNFPND-----SRKIIQT-EFPNESKECDNIQFLKDSKESENKNFPN 770
Query: 207 DVQMFGTTNVTNKLREAKDVQTFESSKD-----------------IDELISAAEDEQSRP 249
D + T N+ +E ++Q + SK+ ++E + +SR
Sbjct: 771 DSRKIIQTEFPNESKECDNIQFLKDSKESNKYFLNESKKRKRDDHLNESKGSGNPNESRE 830
Query: 250 AEDASELK 257
+E A LK
Sbjct: 831 SETAEHLK 838
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.129 0.350
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 121,910,386
Number of Sequences: 539616
Number of extensions: 5104958
Number of successful extensions: 15276
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 346
Number of HSP's that attempted gapping in prelim test: 14900
Number of HSP's gapped (non-prelim): 693
length of query: 336
length of database: 191,569,459
effective HSP length: 118
effective length of query: 218
effective length of database: 127,894,771
effective search space: 27881060078
effective search space used: 27881060078
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 61 (28.1 bits)