Query 019733
Match_columns 336
No_of_seqs 153 out of 671
Neff 4.6
Searched_HMMs 46136
Date Fri Mar 29 04:06:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019733.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019733hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5066 SCS2 VAMP-associated p 99.9 1.8E-24 3.9E-29 198.6 12.9 121 6-128 3-124 (242)
2 KOG0439 VAMP-associated protei 99.9 9.3E-24 2E-28 191.8 14.7 128 3-132 6-136 (218)
3 PF00635 Motile_Sperm: MSP (Ma 99.9 1.2E-21 2.6E-26 158.3 13.1 105 6-111 2-108 (109)
4 PF14874 PapD-like: Flagellar- 98.4 4E-06 8.8E-11 67.4 11.2 70 4-73 2-74 (102)
5 PF00345 PapD_N: Pili and flag 96.2 0.061 1.3E-06 44.8 9.9 83 6-95 2-93 (122)
6 PF14646 MYCBPAP: MYCBP-associ 92.6 0.64 1.4E-05 47.2 9.1 63 12-74 238-313 (426)
7 PRK09918 putative fimbrial cha 91.0 3.8 8.2E-05 38.5 11.7 83 6-95 26-113 (230)
8 PRK09926 putative chaperone pr 89.9 4.7 0.0001 38.3 11.4 86 5-95 26-121 (246)
9 PF07610 DUF1573: Protein of u 88.8 1.9 4E-05 30.6 6.0 43 27-70 2-45 (45)
10 PRK15249 fimbrial chaperone pr 88.0 4.3 9.4E-05 38.8 9.8 85 6-95 30-125 (253)
11 PRK15246 fimbrial assembly cha 87.3 10 0.00022 36.0 11.8 85 6-95 12-106 (233)
12 PF11614 FixG_C: IG-like fold 85.4 3.5 7.6E-05 34.2 6.8 53 22-74 32-86 (118)
13 PRK11385 putativi pili assembl 83.1 10 0.00022 36.1 9.7 85 6-95 28-124 (236)
14 PRK15295 fimbrial assembly cha 82.0 14 0.00031 34.7 10.1 84 6-95 21-111 (226)
15 PRK15299 fimbrial chaperone pr 81.2 16 0.00034 34.4 10.1 84 6-95 24-115 (227)
16 PRK15211 fimbrial chaperone pr 80.5 17 0.00036 34.5 10.1 84 6-95 24-113 (229)
17 PRK15290 lfpB fimbrial chapero 77.2 23 0.0005 33.9 10.0 85 6-95 39-131 (243)
18 PF14197 Cep57_CLD_2: Centroso 76.3 12 0.00026 29.3 6.5 51 267-317 3-60 (69)
19 PRK15208 long polar fimbrial c 74.9 28 0.00061 32.7 9.8 85 5-95 22-112 (228)
20 PF06280 DUF1034: Fn3-like dom 74.5 9.2 0.0002 31.4 5.8 54 20-73 7-81 (112)
21 PRK10884 SH3 domain-containing 73.9 13 0.00028 34.8 7.2 44 269-312 125-168 (206)
22 COG3121 FimC P pilus assembly 73.8 50 0.0011 31.2 11.3 111 6-128 29-146 (235)
23 PRK15254 fimbrial chaperone pr 71.5 43 0.00093 32.0 10.2 85 6-95 18-110 (239)
24 PF08912 Rho_Binding: Rho Bind 70.9 19 0.00041 28.6 6.4 33 267-299 1-33 (69)
25 PRK04406 hypothetical protein; 70.6 17 0.00036 29.0 6.1 48 269-316 4-51 (75)
26 PRK15188 fimbrial chaperone pr 69.9 46 0.001 31.6 10.0 84 6-95 29-118 (228)
27 PRK15192 fimbrial chaperone Bc 69.4 43 0.00094 31.9 9.8 82 6-95 24-119 (234)
28 PF04102 SlyX: SlyX; InterPro 68.8 16 0.00035 28.2 5.6 44 274-317 2-45 (69)
29 PRK15195 fimbrial chaperone pr 67.4 58 0.0012 30.8 10.1 84 6-95 27-116 (229)
30 PF05546 She9_MDM33: She9 / Md 66.1 18 0.00039 34.2 6.3 52 265-316 26-79 (207)
31 PRK00846 hypothetical protein; 65.4 21 0.00044 28.8 5.7 46 272-317 9-54 (77)
32 TIGR03079 CH4_NH3mon_ox_B meth 65.1 16 0.00035 37.5 6.2 57 19-75 280-357 (399)
33 PF07795 DUF1635: Protein of u 64.2 16 0.00035 34.7 5.7 48 270-317 2-60 (214)
34 PRK04325 hypothetical protein; 64.2 20 0.00043 28.3 5.4 47 270-316 3-49 (74)
35 PRK15233 putative fimbrial cha 63.5 1.3E+02 0.0028 29.1 11.8 79 11-95 47-130 (246)
36 PF04508 Pox_A_type_inc: Viral 63.5 8 0.00017 24.6 2.4 20 270-289 2-21 (23)
37 PRK02119 hypothetical protein; 61.5 30 0.00064 27.3 5.9 46 271-316 4-49 (73)
38 PF00927 Transglut_C: Transglu 61.0 29 0.00063 28.1 6.1 57 19-75 13-79 (107)
39 PRK15218 fimbrial chaperone pr 59.7 1.5E+02 0.0032 28.1 11.3 82 8-95 22-113 (226)
40 PF10633 NPCBM_assoc: NPCBM-as 59.6 19 0.00041 27.7 4.5 55 20-74 4-62 (78)
41 smart00809 Alpha_adaptinC2 Ada 58.9 69 0.0015 25.4 7.8 53 20-72 17-73 (104)
42 COG3883 Uncharacterized protei 58.6 32 0.00069 33.7 6.7 66 249-314 25-90 (265)
43 PF04728 LPP: Lipoprotein leuc 57.8 36 0.00078 26.0 5.5 36 263-298 4-39 (56)
44 PF12325 TMF_TATA_bd: TATA ele 56.3 54 0.0012 28.3 7.1 54 263-316 24-80 (120)
45 PF13870 DUF4201: Domain of un 56.2 53 0.0011 29.3 7.4 55 262-316 77-131 (177)
46 PF12777 MT: Microtubule-bindi 55.7 24 0.00052 35.0 5.5 51 265-315 224-274 (344)
47 PF05506 DUF756: Domain of unk 53.9 51 0.0011 26.1 6.2 45 23-70 20-65 (89)
48 PF08606 Prp19: Prp19/Pso4-lik 53.7 58 0.0013 26.0 6.3 46 263-315 23-68 (70)
49 PF07926 TPR_MLP1_2: TPR/MLP1/ 53.7 48 0.001 28.4 6.5 57 256-315 52-109 (132)
50 PRK15274 putative periplasmic 53.1 2.2E+02 0.0048 27.6 11.6 80 11-95 33-120 (257)
51 KOG2685 Cystoskeletal protein 52.8 40 0.00086 35.1 6.6 53 258-317 340-392 (421)
52 PF02883 Alpha_adaptinC2: Adap 52.2 1.3E+02 0.0027 24.5 9.1 74 20-93 23-101 (115)
53 PF05064 Nsp1_C: Nsp1-like C-t 51.9 21 0.00046 30.3 3.9 66 251-316 18-83 (116)
54 PRK15224 pili assembly chapero 51.7 2.2E+02 0.0047 27.3 11.1 79 9-95 33-118 (237)
55 PF06030 DUF916: Bacterial pro 51.0 1.5E+02 0.0032 25.4 8.9 29 14-42 20-48 (121)
56 KOG2077 JNK/SAPK-associated pr 50.6 38 0.00083 36.9 6.3 63 254-316 314-376 (832)
57 PRK15253 putative fimbrial ass 48.2 2.6E+02 0.0056 26.8 11.3 79 11-95 40-128 (242)
58 PF11611 DUF4352: Domain of un 47.9 77 0.0017 25.5 6.6 52 21-72 36-101 (123)
59 PF10498 IFT57: Intra-flagella 47.6 67 0.0015 32.6 7.3 54 263-316 267-320 (359)
60 PF02753 PapD_C: Pili assembly 47.1 18 0.00038 27.1 2.4 44 27-70 1-45 (68)
61 PF13851 GAS: Growth-arrest sp 47.0 86 0.0019 29.1 7.4 52 264-315 29-80 (201)
62 PF11559 ADIP: Afadin- and alp 46.9 97 0.0021 26.8 7.4 35 265-299 69-103 (151)
63 PF08826 DMPK_coil: DMPK coile 46.6 1E+02 0.0022 23.8 6.5 34 267-300 16-49 (61)
64 PRK02793 phi X174 lysis protei 46.4 65 0.0014 25.3 5.6 44 273-316 5-48 (72)
65 PF03962 Mnd1: Mnd1 family; I 46.4 44 0.00096 30.7 5.4 46 269-314 69-120 (188)
66 PRK00295 hypothetical protein; 45.9 65 0.0014 25.0 5.5 42 275-316 4-45 (68)
67 PF13815 Dzip-like_N: Iguana/D 45.8 61 0.0013 27.4 5.8 41 273-313 77-117 (118)
68 PRK00736 hypothetical protein; 45.7 66 0.0014 25.0 5.5 41 276-316 5-45 (68)
69 TIGR03185 DNA_S_dndD DNA sulfu 44.9 66 0.0014 34.5 7.2 60 265-324 219-296 (650)
70 PRK15308 putative fimbrial pro 44.8 2.6E+02 0.0057 26.7 10.5 86 3-96 15-118 (234)
71 PF04744 Monooxygenase_B: Mono 43.5 1.3E+02 0.0029 31.0 8.6 66 6-73 249-336 (381)
72 PRK15285 putative fimbrial cha 43.4 3.1E+02 0.0067 26.4 11.8 80 11-95 32-119 (250)
73 PF10473 CENP-F_leu_zip: Leuci 42.7 1E+02 0.0023 27.4 6.9 47 266-312 42-88 (140)
74 PF00038 Filament: Intermediat 42.1 1.1E+02 0.0023 29.3 7.6 51 263-313 76-126 (312)
75 PF12690 BsuPI: Intracellular 40.8 1.2E+02 0.0025 24.2 6.4 20 24-43 3-22 (82)
76 COG5185 HEC1 Protein involved 40.8 77 0.0017 33.9 6.6 49 263-311 265-316 (622)
77 PRK14148 heat shock protein Gr 40.3 80 0.0017 29.5 6.1 48 265-312 36-87 (195)
78 PRK10884 SH3 domain-containing 40.1 97 0.0021 29.0 6.7 27 287-313 129-155 (206)
79 PF12761 End3: Actin cytoskele 37.4 41 0.00089 31.6 3.7 23 273-295 100-122 (195)
80 PF03962 Mnd1: Mnd1 family; I 37.1 90 0.002 28.7 5.9 52 263-314 70-127 (188)
81 PRK14160 heat shock protein Gr 36.6 1.3E+02 0.0027 28.6 6.8 57 256-312 48-108 (211)
82 PF03173 CHB_HEX: Putative car 36.3 41 0.0009 30.4 3.5 34 39-72 69-104 (164)
83 PF08317 Spc7: Spc7 kinetochor 36.2 1.3E+02 0.0029 29.5 7.3 15 302-316 274-288 (325)
84 PF05377 FlaC_arch: Flagella a 35.8 1E+02 0.0022 23.6 4.9 35 265-299 3-37 (55)
85 PF04977 DivIC: Septum formati 35.0 1.3E+02 0.0029 22.5 5.7 31 265-295 20-50 (80)
86 KOG3564 GTPase-activating prot 34.8 92 0.002 33.4 6.1 40 276-315 63-102 (604)
87 PF13870 DUF4201: Domain of un 34.2 1.6E+02 0.0035 26.1 7.0 54 264-317 86-139 (177)
88 PF05008 V-SNARE: Vesicle tran 33.8 1.5E+02 0.0033 22.6 5.9 26 275-300 24-49 (79)
89 PF06428 Sec2p: GDP/GTP exchan 33.7 1.9E+02 0.0041 24.3 6.8 50 265-314 11-61 (100)
90 PF05008 V-SNARE: Vesicle tran 33.6 1.2E+02 0.0026 23.2 5.3 54 260-313 23-77 (79)
91 PF13205 Big_5: Bacterial Ig-l 33.5 2.2E+02 0.0048 22.2 7.0 57 12-71 26-85 (107)
92 TIGR02745 ccoG_rdxA_fixG cytoc 33.5 2.6E+02 0.0055 29.2 9.1 69 22-92 347-417 (434)
93 PF00769 ERM: Ezrin/radixin/mo 33.5 90 0.002 29.8 5.5 36 279-314 78-113 (246)
94 COG4372 Uncharacterized protei 33.3 1.4E+02 0.003 31.3 6.9 51 263-313 75-132 (499)
95 smart00637 CBD_II CBD_II domai 32.7 2E+02 0.0044 22.6 6.6 48 23-70 8-75 (92)
96 PF10874 DUF2746: Protein of u 32.2 1.3E+02 0.0029 23.0 5.1 40 264-306 10-49 (57)
97 PF05667 DUF812: Protein of un 31.2 1.9E+02 0.0042 31.3 8.0 58 259-316 325-382 (594)
98 PRK14161 heat shock protein Gr 31.1 2.1E+02 0.0044 26.4 7.2 47 266-312 16-66 (178)
99 KOG2176 Exocyst complex, subun 31.1 1E+02 0.0022 34.6 6.0 45 263-307 81-126 (800)
100 PF05761 5_nucleotid: 5' nucle 31.1 1.4E+02 0.003 31.2 6.7 57 273-331 339-401 (448)
101 PF06148 COG2: COG (conserved 31.0 83 0.0018 26.8 4.4 64 250-314 57-121 (133)
102 COG1579 Zn-ribbon protein, pos 30.9 1.6E+02 0.0034 28.5 6.6 51 264-314 119-173 (239)
103 PF10473 CENP-F_leu_zip: Leuci 30.7 2.1E+02 0.0045 25.5 6.9 49 267-315 29-77 (140)
104 PRK09973 putative outer membra 30.7 1.4E+02 0.003 24.7 5.3 42 263-304 25-67 (85)
105 PF08702 Fib_alpha: Fibrinogen 30.6 1.4E+02 0.003 26.5 5.8 39 263-301 30-68 (146)
106 PF00553 CBM_2: Cellulose bind 30.4 1.5E+02 0.0033 24.0 5.7 52 22-73 14-85 (101)
107 PF13473 Cupredoxin_1: Cupredo 30.4 2.2E+02 0.0049 22.8 6.6 52 7-70 31-82 (104)
108 PF15456 Uds1: Up-regulated Du 30.3 2.3E+02 0.0049 24.7 6.9 32 263-295 30-61 (124)
109 PHA02414 hypothetical protein 30.2 77 0.0017 27.0 3.8 19 269-287 4-22 (111)
110 PRK14145 heat shock protein Gr 30.2 1.2E+02 0.0026 28.4 5.6 46 267-312 43-92 (196)
111 PRK14163 heat shock protein Gr 30.0 1.3E+02 0.0029 28.6 5.8 42 271-312 42-87 (214)
112 PRK01026 tetrahydromethanopter 29.8 90 0.0019 25.4 4.0 27 268-294 14-40 (77)
113 PRK14158 heat shock protein Gr 29.8 1.6E+02 0.0034 27.6 6.2 44 269-312 40-87 (194)
114 PF02183 HALZ: Homeobox associ 29.2 1.3E+02 0.0027 21.8 4.3 17 267-283 3-19 (45)
115 PF08647 BRE1: BRE1 E3 ubiquit 29.0 2.9E+02 0.0062 22.6 7.0 50 267-316 15-64 (96)
116 PRK14143 heat shock protein Gr 28.5 1.6E+02 0.0035 28.3 6.2 44 270-313 68-115 (238)
117 PF09738 DUF2051: Double stran 28.0 1.9E+02 0.0042 28.7 6.9 50 265-314 115-164 (302)
118 PF15290 Syntaphilin: Golgi-lo 27.9 1.1E+02 0.0023 30.7 4.9 41 268-308 88-145 (305)
119 TIGR01149 mtrG N5-methyltetrah 27.6 1.1E+02 0.0023 24.5 4.0 26 268-293 11-36 (70)
120 PF04111 APG6: Autophagy prote 27.5 1.7E+02 0.0036 29.0 6.4 31 267-297 55-85 (314)
121 COG2433 Uncharacterized conser 27.3 2E+02 0.0043 31.6 7.2 54 263-316 437-507 (652)
122 PF12325 TMF_TATA_bd: TATA ele 27.3 1.3E+02 0.0028 26.0 4.9 40 270-316 17-56 (120)
123 PF05753 TRAP_beta: Translocon 27.1 2.9E+02 0.0064 25.3 7.5 54 19-73 36-98 (181)
124 PF07888 CALCOCO1: Calcium bin 27.1 2E+02 0.0044 31.1 7.2 36 265-300 160-195 (546)
125 KOG0995 Centromere-associated 26.9 1.9E+02 0.004 31.5 6.8 49 265-313 269-317 (581)
126 PF11559 ADIP: Afadin- and alp 26.6 2.7E+02 0.0059 24.0 6.9 38 264-301 61-98 (151)
127 COG5613 Uncharacterized conser 26.2 1.7E+02 0.0036 30.2 6.1 47 260-316 328-374 (400)
128 TIGR03185 DNA_S_dndD DNA sulfu 26.2 1.8E+02 0.0039 31.3 6.8 51 265-315 205-255 (650)
129 TIGR02231 conserved hypothetic 26.1 1.5E+02 0.0032 31.0 6.0 30 269-298 138-167 (525)
130 PF04210 MtrG: Tetrahydrometha 26.0 1.1E+02 0.0025 24.4 3.9 27 268-294 11-37 (70)
131 PF00769 ERM: Ezrin/radixin/mo 26.0 1.5E+02 0.0032 28.3 5.5 35 280-314 51-85 (246)
132 PF13815 Dzip-like_N: Iguana/D 25.7 2.6E+02 0.0056 23.6 6.4 37 266-302 77-113 (118)
133 PF08826 DMPK_coil: DMPK coile 25.6 2.4E+02 0.0051 21.8 5.5 37 263-299 19-55 (61)
134 TIGR02209 ftsL_broad cell divi 25.5 2.6E+02 0.0056 21.5 6.0 39 263-301 25-63 (85)
135 PRK06008 flgL flagellar hook-a 25.5 2.8E+02 0.0061 27.4 7.6 68 263-332 61-138 (348)
136 KOG3501 Molecular chaperone Pr 25.4 1.5E+02 0.0032 25.7 4.7 38 264-301 76-113 (114)
137 PRK14127 cell division protein 25.3 2E+02 0.0043 24.6 5.6 38 263-300 31-68 (109)
138 PF04111 APG6: Autophagy prote 25.2 2.4E+02 0.0053 27.9 7.0 27 269-295 64-90 (314)
139 PF14203 DUF4319: Domain of un 25.2 55 0.0012 25.5 2.0 30 268-297 19-50 (64)
140 PF12777 MT: Microtubule-bindi 24.8 2.6E+02 0.0056 27.7 7.2 45 263-307 9-57 (344)
141 PHA02047 phage lambda Rz1-like 24.7 2.6E+02 0.0057 23.8 6.0 44 268-314 33-76 (101)
142 PF04420 CHD5: CHD5-like prote 24.5 2.9E+02 0.0062 24.7 6.7 26 258-283 36-61 (161)
143 smart00338 BRLZ basic region l 24.0 2.5E+02 0.0053 20.9 5.4 36 278-313 28-63 (65)
144 PF09640 DUF2027: Domain of un 24.0 1.1E+02 0.0024 28.0 4.1 66 23-96 18-84 (162)
145 PRK14139 heat shock protein Gr 23.8 2.1E+02 0.0046 26.5 5.9 41 272-312 35-79 (185)
146 KOG1899 LAR transmembrane tyro 23.8 1.4E+02 0.0031 33.0 5.4 39 251-289 160-201 (861)
147 PF10342 GPI-anchored: Ser-Thr 23.6 3.4E+02 0.0073 20.7 7.1 58 11-69 15-77 (93)
148 PF15458 NTR2: Nineteen comple 23.4 2.2E+02 0.0047 27.4 6.1 49 265-313 204-252 (254)
149 PF09738 DUF2051: Double stran 23.3 3.1E+02 0.0066 27.4 7.3 60 258-317 100-160 (302)
150 PF04156 IncA: IncA protein; 23.2 3.6E+02 0.0079 23.9 7.2 22 275-296 129-150 (191)
151 PF12210 Hrs_helical: Hepatocy 23.1 3E+02 0.0065 23.3 6.1 31 267-301 58-88 (96)
152 PF01920 Prefoldin_2: Prefoldi 22.5 2.2E+02 0.0048 22.5 5.2 32 264-295 7-38 (106)
153 PF10146 zf-C4H2: Zinc finger- 22.4 3.9E+02 0.0084 25.6 7.6 49 265-313 56-104 (230)
154 PRK14127 cell division protein 22.4 1E+02 0.0023 26.3 3.3 34 265-298 40-73 (109)
155 PF07705 CARDB: CARDB; InterP 22.1 3E+02 0.0066 20.8 5.8 54 20-73 18-72 (101)
156 PRK10803 tol-pal system protei 22.0 2.4E+02 0.0052 27.1 6.2 58 256-313 48-105 (263)
157 PF08172 CASP_C: CASP C termin 21.9 1E+02 0.0022 29.7 3.6 28 271-298 1-28 (248)
158 PRK15422 septal ring assembly 21.9 3.8E+02 0.0083 21.9 6.3 37 269-312 25-61 (79)
159 PRK09039 hypothetical protein; 21.7 2.4E+02 0.0051 28.3 6.3 29 263-291 138-166 (343)
160 PF03148 Tektin: Tektin family 21.5 2.6E+02 0.0055 28.4 6.5 42 258-299 313-354 (384)
161 TIGR01837 PHA_granule_1 poly(h 21.5 1E+02 0.0022 26.3 3.1 21 269-289 96-116 (118)
162 PF07106 TBPIP: Tat binding pr 21.4 3E+02 0.0066 24.2 6.3 49 263-311 87-137 (169)
163 PRK06569 F0F1 ATP synthase sub 21.2 3.7E+02 0.008 24.3 6.8 18 281-298 67-84 (155)
164 PF08700 Vps51: Vps51/Vps67; 21.2 2.4E+02 0.0052 21.7 5.0 36 262-297 51-86 (87)
165 PRK13729 conjugal transfer pil 21.0 1.6E+02 0.0035 31.2 5.0 35 265-299 79-113 (475)
166 PF01920 Prefoldin_2: Prefoldi 20.9 2.8E+02 0.0061 21.8 5.5 37 262-298 62-98 (106)
167 PF02403 Seryl_tRNA_N: Seryl-t 20.8 2E+02 0.0044 23.3 4.7 24 265-288 39-62 (108)
168 PF10234 Cluap1: Clusterin-ass 20.8 2.9E+02 0.0062 27.2 6.4 52 265-316 186-237 (267)
169 COG1561 Uncharacterized stress 20.6 1.7E+02 0.0036 29.2 4.8 45 274-318 159-213 (290)
170 PF05278 PEARLI-4: Arabidopsis 20.6 3.3E+02 0.0072 26.9 6.8 49 268-316 206-254 (269)
171 PHA02562 46 endonuclease subun 20.4 3.6E+02 0.0078 27.8 7.5 29 263-291 300-328 (562)
172 PF15035 Rootletin: Ciliary ro 20.4 2.9E+02 0.0063 25.4 6.1 45 271-315 76-120 (182)
173 TIGR02169 SMC_prok_A chromosom 20.3 3E+02 0.0065 30.8 7.3 51 263-313 675-725 (1164)
174 PRK14140 heat shock protein Gr 20.3 2.8E+02 0.006 25.9 6.0 13 299-311 71-83 (191)
175 PF06818 Fez1: Fez1; InterPro 20.2 2.5E+02 0.0054 26.6 5.6 45 269-313 31-75 (202)
176 PRK04863 mukB cell division pr 20.2 2.8E+02 0.0061 33.5 7.3 50 264-313 350-399 (1486)
177 cd00632 Prefoldin_beta Prefold 20.1 2.4E+02 0.0052 23.1 5.0 34 263-296 7-40 (105)
No 1
>COG5066 SCS2 VAMP-associated protein involved in inositol metabolism [Intracellular trafficking and secretion]
Probab=99.92 E-value=1.8e-24 Score=198.60 Aligned_cols=121 Identities=35% Similarity=0.615 Sum_probs=110.0
Q ss_pred eEEeCCeeEEeccCCCeeEEEEEEEcCCCCeEEEEEeeCCCCcEEEeCCceeeCCCCeEEEEEEeccCcCCC-CCCCCCC
Q 019733 6 LDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKAISDFTVTMQAQRVAP-PDLQCKD 84 (336)
Q Consensus 6 L~I~P~EL~F~~p~~k~~s~~LtLtN~S~~~VAFKVKTTaP~rY~VrPn~GiI~Pgesi~I~ITlqa~~~~P-~d~k~kD 84 (336)
|.|+|. +.|..|+....+|.+-|.|++.++|+||||||+|+.||||||.|+|.|++++.|.|+||++++.| +|.+|+|
T Consensus 3 veisp~-~~fy~Plt~~ske~~sv~NnspepvgfKVKTTaPK~YcVRPN~g~Iep~stv~VeVilq~l~eEpapdfKCrd 81 (242)
T COG5066 3 VEISPQ-TTFYVPLTNKSKEMFSVQNNSPEPVGFKVKTTAPKDYCVRPNMGLIEPMSTVEVEVILQGLTEEPAPDFKCRD 81 (242)
T ss_pred eEecCc-eEEecccccccceeeEeecCCCCceeEEeeccCCcceeEcCCCceeccCCeeEEEEEeeccccCCCCCccccc
Confidence 566665 45777899999999999999999999999999999999999999999999999999999999877 6899999
Q ss_pred eEEEEEEEcCCCCCcchhhHHhhcccCCCceeEEEEEEEEeCCC
Q 019733 85 KFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVILMSPP 128 (336)
Q Consensus 85 KFLVqs~~vp~g~~d~dl~~~iFkk~~k~~I~ekKLrV~fv~p~ 128 (336)
|||||++..+.+.+-.|+. ++|....+.-|.++||+|+|....
T Consensus 82 KFLiqs~~~~~~l~g~d~a-d~wt~~sk~~i~~rkIrcvyse~~ 124 (242)
T COG5066 82 KFLIQSYRFDWRLSGSDFA-DHWTSSSKKPIWTRKIRCVYSEEE 124 (242)
T ss_pred eeEEEEeccChhhccchHH-HHHHhhccccchhhheeEEeeccc
Confidence 9999999999887778886 899999988899999999999543
No 2
>KOG0439 consensus VAMP-associated protein involved in inositol metabolism [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=9.3e-24 Score=191.76 Aligned_cols=128 Identities=40% Similarity=0.665 Sum_probs=114.7
Q ss_pred CCCeEEeC-CeeEEeccCCCeeEEEEEEEcCCCCeEEEEEeeCCCCcEEEeCCceeeCCCCeEEEEEEeccCcCCCCCCC
Q 019733 3 EELLDIQP-LELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKAISDFTVTMQAQRVAPPDLQ 81 (336)
Q Consensus 3 s~LL~I~P-~EL~F~~p~~k~~s~~LtLtN~S~~~VAFKVKTTaP~rY~VrPn~GiI~Pgesi~I~ITlqa~~~~P~d~k 81 (336)
..+|.|.| .+|.|.++++.+.+|.|+|+|+++.++|||||||+|++|||||+.|+|.||++++|.|.+|+....|.|++
T Consensus 6 ~~~l~i~P~~~l~F~~~~~~~~~~~l~l~N~t~~~vaFKvktT~p~~y~VrP~~G~i~p~~t~~i~v~~q~~~~~P~d~~ 85 (218)
T KOG0439|consen 6 ESLLEIEPSDELVFPLPLNEQVKCSLTLKNPTKLRVAFKVKTTAPKLYCVRPNGGVIDPGSTVEIEVTHQPFEKSPPDFK 85 (218)
T ss_pred cCccccCCCceEEeccCCCceEEEEEEEecCCCCceEEEEEcCCCCeEEEcCCcceECCCCcEEEEEEeccCccCchhhc
Confidence 37899999 68999999998899999999999999999999999999999999999999999999999999888888989
Q ss_pred CCCeEEEEEEEcCCCCCcchhhHHhhcccC--CCceeEEEEEEEEeCCCCCCC
Q 019733 82 CKDKFLIQGIVVPFGTSDEDITSDMFAKDS--GKYVEEKKLRVILMSPPQSPV 132 (336)
Q Consensus 82 ~kDKFLVqs~~vp~g~~d~dl~~~iFkk~~--k~~I~ekKLrV~fv~p~~s~~ 132 (336)
|+|||+||++.++.+ +..++ .++|.... +..+.+.+++|.|+.+..+..
T Consensus 86 ~r~kF~v~~~~~~~~-~~~~~-~~~~~~~k~~~~~~~~~k~~~~~~~~~~~~~ 136 (218)
T KOG0439|consen 86 SRHKFLIQSLKAPPP-TTRDV-VDLWKFQKETPKESFETKLRVVFVAPTETDS 136 (218)
T ss_pred ccceEEEEEEecCCc-cccch-hhhccccccccccccceeeEEEeeCCCCCcc
Confidence 999999999999876 22233 47888776 788999999999999887644
No 3
>PF00635 Motile_Sperm: MSP (Major sperm protein) domain; InterPro: IPR000535 Major sperm proteins (MSP) are central components in molecular interactions underlying sperm motility in Caenorhabditis elegans, whose sperm employ an amoebae-like crawling motion using a MSP-containing lamellipod, rather than the flagellar-based swimming motion associated with other sperm. These proteins oligomerise to form an extensive filament system that extends from sperm villipoda, along the leading edge of the pseudopod. About 30 MSP isoforms may exist in C. elegans. MSPs form a fibrous network, whereby MSP dimers form helical subfilaments that coil around one another to produce filaments, which in turn form supercoils to produce bundles. The crystal structure of MSP from C. elegans reveals an immunoglobulin (Ig)-like seven-stranded beta sandwich fold []. ; GO: 0005198 structural molecule activity; PDB: 1MSP_A 3MSP_B 2BVU_B 2MSP_C 1Z9O_F 1Z9L_A 3IKK_A 1WIC_A 2CRI_A 2RR3_A ....
Probab=99.87 E-value=1.2e-21 Score=158.33 Aligned_cols=105 Identities=37% Similarity=0.623 Sum_probs=84.2
Q ss_pred eEEeCC-eeEEeccCCCeeEEEEEEEcCCCCeEEEEEeeCCCCcEEEeCCceeeCCCCeEEEEEEeccCcCCCCCCCCCC
Q 019733 6 LDIQPL-ELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKAISDFTVTMQAQRVAPPDLQCKD 84 (336)
Q Consensus 6 L~I~P~-EL~F~~p~~k~~s~~LtLtN~S~~~VAFKVKTTaP~rY~VrPn~GiI~Pgesi~I~ITlqa~~~~P~d~k~kD 84 (336)
|.|+|. .|.|.++.++..+|.|+|+|+++++||||||||++.+|+|+|+.|+|.||+++.|.|++++....+.. ..+|
T Consensus 2 l~v~P~~~i~F~~~~~~~~~~~l~l~N~s~~~i~fKiktt~~~~y~v~P~~G~i~p~~~~~i~I~~~~~~~~~~~-~~~d 80 (109)
T PF00635_consen 2 LSVEPSELIFFNAPFNKQQSCELTLTNPSDKPIAFKIKTTNPNRYRVKPSYGIIEPGESVEITITFQPFDFEPSN-KKKD 80 (109)
T ss_dssp CEEESSSEEEEESSTSS-EEEEEEEEE-SSSEEEEEEEES-TTTEEEESSEEEE-TTEEEEEEEEE-SSSTTTTS-TSSE
T ss_pred eEEeCCcceEEcCCCCceEEEEEEEECCCCCcEEEEEEcCCCceEEecCCCEEECCCCEEEEEEEEEecccCCCC-CCCC
Confidence 789997 79999999999999999999999999999999999999999999999999999999999998765433 2399
Q ss_pred eEEEEEEEcCCCCCc-chhhHHhhcccC
Q 019733 85 KFLIQGIVVPFGTSD-EDITSDMFAKDS 111 (336)
Q Consensus 85 KFLVqs~~vp~g~~d-~dl~~~iFkk~~ 111 (336)
||+|+++.++++..+ .+....+|++..
T Consensus 81 kf~I~~~~~~~~~~~~~~~~~~~~~~~~ 108 (109)
T PF00635_consen 81 KFLIQSIVVPDNATDPKKDFKQIWKNGK 108 (109)
T ss_dssp EEEEEEEEE-TT-SSSHHHHHCCHHHSS
T ss_pred EEEEEEEEcCCCccchhhhHHHHHhccC
Confidence 999999999876543 233456777653
No 4
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=98.41 E-value=4e-06 Score=67.41 Aligned_cols=70 Identities=23% Similarity=0.368 Sum_probs=61.3
Q ss_pred CCeEEeCCeeEEec-cCCCeeEEEEEEEcCCCCeEEEEEeeCC--CCcEEEeCCceeeCCCCeEEEEEEeccC
Q 019733 4 ELLDIQPLELKFTF-EVKKQSTCVIQLGNKSDQCVAFKVKTTS--PKKYCVRPNVSIIKPKAISDFTVTMQAQ 73 (336)
Q Consensus 4 ~LL~I~P~EL~F~~-p~~k~~s~~LtLtN~S~~~VAFKVKTTa--P~rY~VrPn~GiI~Pgesi~I~ITlqa~ 73 (336)
+.|.++|.+|.|-. ..+......++|+|.+..+..|+|+.-. ...|.|.|..|+|.||.++.+.|++.+.
T Consensus 2 P~l~v~P~~ldFG~v~~g~~~~~~v~l~N~s~~p~~f~v~~~~~~~~~~~v~~~~g~l~PG~~~~~~V~~~~~ 74 (102)
T PF14874_consen 2 PTLEVSPKELDFGNVFVGQTYSRTVTLTNTSSIPARFRVRQPESLSSFFSVEPPSGFLAPGESVELEVTFSPT 74 (102)
T ss_pred CEEEEeCCEEEeeEEccCCEEEEEEEEEECCCCCEEEEEEeCCcCCCCEEEECCCCEECCCCEEEEEEEEEeC
Confidence 56899999999965 4567788999999999999999997543 5789999999999999999999999954
No 5
>PF00345 PapD_N: Pili and flagellar-assembly chaperone, PapD N-terminal domain; InterPro: IPR016147 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors. Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the N-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of seven strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2CO6_B 2CO7_B 1L4I_B 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 3DSN_D 2OS7_B ....
Probab=96.15 E-value=0.061 Score=44.75 Aligned_cols=83 Identities=20% Similarity=0.279 Sum_probs=60.9
Q ss_pred eEEeCCeeEEeccCCCeeEEEEEEEcCCCCeEEEEEeeCC---C------CcEEEeCCceeeCCCCeEEEEEEeccCcCC
Q 019733 6 LDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTS---P------KKYCVRPNVSIIKPKAISDFTVTMQAQRVA 76 (336)
Q Consensus 6 L~I~P~EL~F~~p~~k~~s~~LtLtN~S~~~VAFKVKTTa---P------~rY~VrPn~GiI~Pgesi~I~ITlqa~~~~ 76 (336)
|.|.|..+.|... .....++|+|.++.++.+.+.... . ..|.|-|+.-.|+||++..|.| +... ..
T Consensus 2 i~i~~trii~~~~---~~~~~i~v~N~~~~~~~vq~~v~~~~~~~~~~~~~~~~vsPp~~~L~pg~~q~vRv-~~~~-~~ 76 (122)
T PF00345_consen 2 IQISPTRIIFNES---QRSASITVTNNSDQPYLVQVWVYDQDDEDEDEPTDPFIVSPPIFRLEPGESQTVRV-YRGS-KL 76 (122)
T ss_dssp EEESSSEEEEETT---SSEEEEEEEESSSSEEEEEEEEEETTSTTSSSSSSSEEEESSEEEEETTEEEEEEE-EECS-GS
T ss_pred EEEccEEEEEeCC---CCEEEEEEEcCCCCcEEEEEEEEcCCCcccccccccEEEeCCceEeCCCCcEEEEE-EecC-CC
Confidence 5788889999763 347899999999999999987654 1 2699999999999999999999 5432 22
Q ss_pred CCCCCCCCeEEEEEEEcCC
Q 019733 77 PPDLQCKDKFLIQGIVVPF 95 (336)
Q Consensus 77 P~d~k~kDKFLVqs~~vp~ 95 (336)
+.+ ....|.+....++.
T Consensus 77 ~~~--~E~~yrl~~~~iP~ 93 (122)
T PF00345_consen 77 PID--RESLYRLSFREIPP 93 (122)
T ss_dssp -SS--S-EEEEEEEEEEES
T ss_pred CCC--ceEEEEEEEEEEec
Confidence 322 23455565556654
No 6
>PF14646 MYCBPAP: MYCBP-associated protein family
Probab=92.58 E-value=0.64 Score=47.23 Aligned_cols=63 Identities=11% Similarity=0.316 Sum_probs=53.4
Q ss_pred eeEEeccCCCeeEEEEE-EEcCCCCeEEEEEeeCC------------CCcEEEeCCceeeCCCCeEEEEEEeccCc
Q 019733 12 ELKFTFEVKKQSTCVIQ-LGNKSDQCVAFKVKTTS------------PKKYCVRPNVSIIKPKAISDFTVTMQAQR 74 (336)
Q Consensus 12 EL~F~~p~~k~~s~~Lt-LtN~S~~~VAFKVKTTa------------P~rY~VrPn~GiI~Pgesi~I~ITlqa~~ 74 (336)
.|.|....+......|. |.|.+...|-|..+--. ...|......|+|.||++..|.|++++..
T Consensus 238 ~l~Fe~~p~e~~~~~v~~l~N~Gt~~I~y~W~~~~~~~~~~~~~~~~~~~F~Fd~~~gvilPGe~~~~~~~F~s~~ 313 (426)
T PF14646_consen 238 RLTFECHPGERVSKEVVRLENNGTTAIYYSWRRVPFFKNFGSLFRAQDQRFYFDTSSGVILPGETRNFPFMFKSRK 313 (426)
T ss_pred EEEEEcccCceeeEEEEEEecCCceEEEEEEEecccccccchhccccCCeEEEeCCCCEECCCceEEEEEEEeCCC
Confidence 68898877777777777 99999999999965333 46799999999999999999999999864
No 7
>PRK09918 putative fimbrial chaperone protein; Provisional
Probab=91.00 E-value=3.8 Score=38.52 Aligned_cols=83 Identities=12% Similarity=0.115 Sum_probs=60.1
Q ss_pred eEEeCCeeEEeccCCCeeEEEEEEEcCCCCeEEEEEeeCCC-----CcEEEeCCceeeCCCCeEEEEEEeccCcCCCCCC
Q 019733 6 LDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSP-----KKYCVRPNVSIIKPKAISDFTVTMQAQRVAPPDL 80 (336)
Q Consensus 6 L~I~P~EL~F~~p~~k~~s~~LtLtN~S~~~VAFKVKTTaP-----~rY~VrPn~GiI~Pgesi~I~ITlqa~~~~P~d~ 80 (336)
|.+.+..+.|... ....+++|.|.++.++...+..... .-|.|.|+.-.|+||+...|.|.+... .|.|
T Consensus 26 v~l~~tRvi~~~~---~~~~si~v~N~~~~p~lvQ~wv~~~~~~~~~~fivtPPl~rl~pg~~q~vRii~~~~--lp~d- 99 (230)
T PRK09918 26 MVPETSVVIVEES---DGEGSINVKNTDSNPILLYTTLVDLPEDKSKLLLVTPPVARVEPGQSQQVRFILKSG--SPLN- 99 (230)
T ss_pred EEEccEEEEEECC---CCeEEEEEEcCCCCcEEEEEEEecCCCCCCCCEEEcCCeEEECCCCceEEEEEECCC--CCCC-
Confidence 5677778888753 4578999999999887766654321 359999999999999999999988742 3433
Q ss_pred CCCCeEEEEEEEcCC
Q 019733 81 QCKDKFLIQGIVVPF 95 (336)
Q Consensus 81 k~kDKFLVqs~~vp~ 95 (336)
-.--|.+....+|.
T Consensus 100 -rEs~f~l~v~~IP~ 113 (230)
T PRK09918 100 -TEHLLRVSFEGVPP 113 (230)
T ss_pred -eeEEEEEEEEEcCC
Confidence 12336666666664
No 8
>PRK09926 putative chaperone protein EcpD; Provisional
Probab=89.93 E-value=4.7 Score=38.35 Aligned_cols=86 Identities=20% Similarity=0.256 Sum_probs=61.9
Q ss_pred CeEEeCCeeEEeccCCCeeEEEEEEEcCCCCeEEEEEeeCCCC----------cEEEeCCceeeCCCCeEEEEEEeccCc
Q 019733 5 LLDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPK----------KYCVRPNVSIIKPKAISDFTVTMQAQR 74 (336)
Q Consensus 5 LL~I~P~EL~F~~p~~k~~s~~LtLtN~S~~~VAFKVKTTaP~----------rY~VrPn~GiI~Pgesi~I~ITlqa~~ 74 (336)
-|.|.|..+.|... ....+|+|.|.++.++.........+ -|.|-|+.-.|+||+...|.|...+..
T Consensus 26 ~i~l~~TRvI~~~~---~~~~sv~l~N~~~~p~LvQ~Wvd~~~~~~~p~~~~~pfivtPPl~rl~p~~~q~lRIi~~~~~ 102 (246)
T PRK09926 26 DIVISGTRIIYKSD---QKDVNVRLENKGNNPLLVQSWLDTGDDNAEPGSIKVPFTATPPVSRIDPKRGQTIKLMYTAST 102 (246)
T ss_pred eEEeCceEEEEeCC---CceEEEEEEeCCCCcEEEEEEecCCCCccCccccCCCEEEcCCeEEECCCCccEEEEEeCCCC
Confidence 36778888888763 45789999999998887776554321 399999999999999999999987531
Q ss_pred CCCCCCCCCCeEEEEEEEcCC
Q 019733 75 VAPPDLQCKDKFLIQGIVVPF 95 (336)
Q Consensus 75 ~~P~d~k~kDKFLVqs~~vp~ 95 (336)
..|.|- .--|-+....+|.
T Consensus 103 ~lP~Dr--ESlf~lnv~eIP~ 121 (246)
T PRK09926 103 ALPKDR--ESVFWFNVLEVPP 121 (246)
T ss_pred CCCCCc--eEEEEEEeeecCC
Confidence 344331 1236666666664
No 9
>PF07610 DUF1573: Protein of unknown function (DUF1573); InterPro: IPR011467 These hypothetical proteins from bacteria, such as Rhodopirellula baltica, Bacteroides thetaiotaomicron and Porphyromonas gingivalis, share a region of conserved sequence towards their N termini.
Probab=88.83 E-value=1.9 Score=30.63 Aligned_cols=43 Identities=21% Similarity=0.159 Sum_probs=34.8
Q ss_pred EEEEcCCCCeEE-EEEeeCCCCcEEEeCCceeeCCCCeEEEEEEe
Q 019733 27 IQLGNKSDQCVA-FKVKTTSPKKYCVRPNVSIIKPKAISDFTVTM 70 (336)
Q Consensus 27 LtLtN~S~~~VA-FKVKTTaP~rY~VrPn~GiI~Pgesi~I~ITl 70 (336)
++++|.++.++. .+|+| +=+...+......|.||++..|.|++
T Consensus 2 F~~~N~g~~~L~I~~v~t-sCgCt~~~~~~~~i~PGes~~i~v~y 45 (45)
T PF07610_consen 2 FEFTNTGDSPLVITDVQT-SCGCTTAEYSKKPIAPGESGKIKVTY 45 (45)
T ss_pred EEEEECCCCcEEEEEeeE-ccCCEEeeCCcceECCCCEEEEEEEC
Confidence 689999987665 55665 45788888888999999999999874
No 10
>PRK15249 fimbrial chaperone protein StbB; Provisional
Probab=88.00 E-value=4.3 Score=38.79 Aligned_cols=85 Identities=20% Similarity=0.198 Sum_probs=59.3
Q ss_pred eEEeCCeeEEeccCCCeeEEEEEEEcCCCCeEEEEEeeCCC-----------CcEEEeCCceeeCCCCeEEEEEEeccCc
Q 019733 6 LDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSP-----------KKYCVRPNVSIIKPKAISDFTVTMQAQR 74 (336)
Q Consensus 6 L~I~P~EL~F~~p~~k~~s~~LtLtN~S~~~VAFKVKTTaP-----------~rY~VrPn~GiI~Pgesi~I~ITlqa~~ 74 (336)
|.|.|..+.|... ....+|+|.|.++.++.....+... .-|.|.|+.-.|+||+...|.|...+..
T Consensus 30 l~l~~TRviy~~~---~~~~sl~l~N~~~~p~LvQsWv~~~~~~~~p~~~~~~pFivtPPlfrl~p~~~q~lRI~~~~~~ 106 (253)
T PRK15249 30 VTILGSRIIYPST---ASSVDVQLKNNDAIPYIVQTWFDDGDMNTSPENSSAMPFIATPPVFRIQPKAGQVVRVIYNNTK 106 (253)
T ss_pred EEeCceEEEEeCC---CcceeEEEEcCCCCcEEEEEEEeCCCCCCCccccccCcEEEcCCeEEecCCCceEEEEEEcCCC
Confidence 6778888888653 3468999999998877666543221 1399999999999999999999987422
Q ss_pred CCCCCCCCCCeEEEEEEEcCC
Q 019733 75 VAPPDLQCKDKFLIQGIVVPF 95 (336)
Q Consensus 75 ~~P~d~k~kDKFLVqs~~vp~ 95 (336)
..|.|- .--|.+....+|.
T Consensus 107 ~lP~DR--ESlf~lnv~eIP~ 125 (253)
T PRK15249 107 KLPQDR--ESVFWFNVLQVPP 125 (253)
T ss_pred CCCCCc--eEEEEEEeeecCC
Confidence 344331 2235555555664
No 11
>PRK15246 fimbrial assembly chaperone StbE; Provisional
Probab=87.29 E-value=10 Score=35.97 Aligned_cols=85 Identities=15% Similarity=0.282 Sum_probs=60.0
Q ss_pred eEEeCCeeEEeccCCCeeEEEEEEEcCCCCeEEEEEeeCC------C----CcEEEeCCceeeCCCCeEEEEEEeccCcC
Q 019733 6 LDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTS------P----KKYCVRPNVSIIKPKAISDFTVTMQAQRV 75 (336)
Q Consensus 6 L~I~P~EL~F~~p~~k~~s~~LtLtN~S~~~VAFKVKTTa------P----~rY~VrPn~GiI~Pgesi~I~ITlqa~~~ 75 (336)
|.|.+..+.|... ....+|+|.|.++.++.-.+.... | .-|.|.|+.-.|+||+...|.|.......
T Consensus 12 v~l~~TRvI~~~~---~~~~sv~l~N~~~~p~LvQsWvd~~~~~~~p~~~~~pFivtPPlfrl~~~~~~~lRI~~~~~~~ 88 (233)
T PRK15246 12 VNIDRTRIIFASD---DVAQSLTLSNDNTTPMLLQVWTDAGNIDASPDNSKTPLVALPPVFKMQPGELRTLRLLLSSRQQ 88 (233)
T ss_pred EEECceEEEEcCC---CceEEEEEEeCCCCcEEEEEEEeCCCCccCcccccCcEEECCcceEECCCCceEEEEEECCCCC
Confidence 6677788888763 457899999999887555543321 1 14999999999999999999999875333
Q ss_pred CCCCCCCCCeEEEEEEEcCC
Q 019733 76 APPDLQCKDKFLIQGIVVPF 95 (336)
Q Consensus 76 ~P~d~k~kDKFLVqs~~vp~ 95 (336)
.|.| -.--|-+....+|.
T Consensus 89 LP~D--RESlf~lnv~~IP~ 106 (233)
T PRK15246 89 LATD--RESLFWLNIYQIPP 106 (233)
T ss_pred CCCC--ceEEEEEEEEEcCC
Confidence 4433 12336666667765
No 12
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=85.40 E-value=3.5 Score=34.15 Aligned_cols=53 Identities=15% Similarity=0.258 Sum_probs=37.0
Q ss_pred eeEEEEEEEcCCCCeEEEEEeeCCCCcEEE-eCCce-eeCCCCeEEEEEEeccCc
Q 019733 22 QSTCVIQLGNKSDQCVAFKVKTTSPKKYCV-RPNVS-IIKPKAISDFTVTMQAQR 74 (336)
Q Consensus 22 ~~s~~LtLtN~S~~~VAFKVKTTaP~rY~V-rPn~G-iI~Pgesi~I~ITlqa~~ 74 (336)
.-..+|+|.|.++++..|.|+...+..+.+ .+... .|.||++..+.|.+....
T Consensus 32 ~N~Y~lkl~Nkt~~~~~~~i~~~g~~~~~l~~~~~~i~v~~g~~~~~~v~v~~p~ 86 (118)
T PF11614_consen 32 RNQYTLKLTNKTNQPRTYTISVEGLPGAELQGPENTITVPPGETREVPVFVTAPP 86 (118)
T ss_dssp EEEEEEEEEE-SSS-EEEEEEEES-SS-EE-ES--EEEE-TT-EEEEEEEEEE-G
T ss_pred EEEEEEEEEECCCCCEEEEEEEecCCCeEEECCCcceEECCCCEEEEEEEEEECH
Confidence 346899999999999999999998889988 66555 499999999888876543
No 13
>PRK11385 putativi pili assembly chaperone; Provisional
Probab=83.09 E-value=10 Score=36.07 Aligned_cols=85 Identities=18% Similarity=0.261 Sum_probs=58.4
Q ss_pred eEEeCCeeEEeccCCCeeEEEEEEEcCCCCeEEEEEeeC------------CCCcEEEeCCceeeCCCCeEEEEEEeccC
Q 019733 6 LDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTT------------SPKKYCVRPNVSIIKPKAISDFTVTMQAQ 73 (336)
Q Consensus 6 L~I~P~EL~F~~p~~k~~s~~LtLtN~S~~~VAFKVKTT------------aP~rY~VrPn~GiI~Pgesi~I~ITlqa~ 73 (336)
|.+++..+.|... ....+++|.|.++.+..-..... ...-|.|-|+.-.|+||+...+.|.....
T Consensus 28 v~l~~TRvIy~~~---~~~~sv~l~N~~~~p~LvQswv~~~~~~~~~~~~~~~~pFivtPPlfrl~p~~~q~lRIi~~~~ 104 (236)
T PRK11385 28 VVVGGTRFIFPAD---RESISILLTNTSQESWLINSKINRPTRWAGGEASTVPAPLLAAPPLILLKPGTTGTLRLLRTES 104 (236)
T ss_pred EEeCceEEEEcCC---CceEEEEEEeCCCCcEEEEEEcccCccccCcccccccCCEEEcCCeEEECCCCceEEEEEECCC
Confidence 4566677888753 45789999999988744444211 11349999999999999999999998753
Q ss_pred cCCCCCCCCCCeEEEEEEEcCC
Q 019733 74 RVAPPDLQCKDKFLIQGIVVPF 95 (336)
Q Consensus 74 ~~~P~d~k~kDKFLVqs~~vp~ 95 (336)
...|.| -..-|-+....+|+
T Consensus 105 ~~LP~D--RESlf~lnv~~IPp 124 (236)
T PRK11385 105 DILPVD--RETLFELSIASVPS 124 (236)
T ss_pred CCCCCC--ceEEEEEEEEecCC
Confidence 234533 12345666666665
No 14
>PRK15295 fimbrial assembly chaperone SthB; Provisional
Probab=81.98 E-value=14 Score=34.72 Aligned_cols=84 Identities=12% Similarity=0.167 Sum_probs=57.8
Q ss_pred eEEeCCeeEEeccCCCeeEEEEEEEcCCCCeEEEEEeeCC-------CCcEEEeCCceeeCCCCeEEEEEEeccCcCCCC
Q 019733 6 LDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTS-------PKKYCVRPNVSIIKPKAISDFTVTMQAQRVAPP 78 (336)
Q Consensus 6 L~I~P~EL~F~~p~~k~~s~~LtLtN~S~~~VAFKVKTTa-------P~rY~VrPn~GiI~Pgesi~I~ITlqa~~~~P~ 78 (336)
|.+.+..+.|... ....+++|.|.++.++.-...... ..-|.|.|+.-.|+||+...|.|..... ..|.
T Consensus 21 i~l~~TRvI~~~~---~~~~si~i~N~~~~p~LvQsWv~~~~~~~~~~~pFivtPPl~rl~p~~~q~lRI~~~~~-~LP~ 96 (226)
T PRK15295 21 IVVGGTRLVFDGN---NDESSINVENKDSKANLVQSWLSVVDPQVTNKQAFIITPPLFRLDAGQKNSIRVIRSGA-PLPA 96 (226)
T ss_pred EEeCceEEEEeCC---CceeEEEEEeCCCCcEEEEEEEeCCCCCCCCCCCEEEcCCeEEECCCCceEEEEEECCC-CCCC
Confidence 5677778888763 347899999999876543332221 2249999999999999999999988642 3343
Q ss_pred CCCCCCeEEEEEEEcCC
Q 019733 79 DLQCKDKFLIQGIVVPF 95 (336)
Q Consensus 79 d~k~kDKFLVqs~~vp~ 95 (336)
| -.--|.+....+|.
T Consensus 97 D--rEslf~lnv~~IP~ 111 (226)
T PRK15295 97 D--RESMYWLNIKGIPS 111 (226)
T ss_pred C--ceEEEEEEEEEcCC
Confidence 3 12236666666665
No 15
>PRK15299 fimbrial chaperone protein StiB; Provisional
Probab=81.23 E-value=16 Score=34.36 Aligned_cols=84 Identities=12% Similarity=0.162 Sum_probs=59.7
Q ss_pred eEEeCCeeEEeccCCCeeEEEEEEEcCCCCeEEEEEeeCC--------CCcEEEeCCceeeCCCCeEEEEEEeccCcCCC
Q 019733 6 LDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTS--------PKKYCVRPNVSIIKPKAISDFTVTMQAQRVAP 77 (336)
Q Consensus 6 L~I~P~EL~F~~p~~k~~s~~LtLtN~S~~~VAFKVKTTa--------P~rY~VrPn~GiI~Pgesi~I~ITlqa~~~~P 77 (336)
|.+.|..+.|... ....+|+|.|.++.++.-...... ..-|.|-|+.-.|+||+...|.|..... ..|
T Consensus 24 i~l~~TRvi~~~~---~~~~sl~l~N~~~~p~lvQsWv~~~~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~~~~-~lP 99 (227)
T PRK15299 24 INIGTTRVIFHGD---AKDASISISNSDNVPYLIQSWAQSISETGASGDAPFMVTPPLFRLNGGQKNVLRIIRTGG-NLP 99 (227)
T ss_pred EEECceEEEEeCC---CcEEEEEEEeCCCCcEEEEEEeecCCCCCCcCCCCEEEcCCeEEECCCCccEEEEEECCC-CCC
Confidence 6778888888764 346899999998887666654322 1249999999999999999999987642 234
Q ss_pred CCCCCCCeEEEEEEEcCC
Q 019733 78 PDLQCKDKFLIQGIVVPF 95 (336)
Q Consensus 78 ~d~k~kDKFLVqs~~vp~ 95 (336)
.| -..-|.+....+|.
T Consensus 100 ~D--rEslf~lnv~eIP~ 115 (227)
T PRK15299 100 ED--RESLYWLDIKSIPS 115 (227)
T ss_pred Cc--ceEEEEEEeEecCC
Confidence 33 12336666666664
No 16
>PRK15211 fimbrial chaperone protein PefD; Provisional
Probab=80.53 E-value=17 Score=34.49 Aligned_cols=84 Identities=13% Similarity=0.156 Sum_probs=58.3
Q ss_pred eEEeCCeeEEeccCCCeeEEEEEEEcCCCCeEEEEEeeCC------CCcEEEeCCceeeCCCCeEEEEEEeccCcCCCCC
Q 019733 6 LDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTS------PKKYCVRPNVSIIKPKAISDFTVTMQAQRVAPPD 79 (336)
Q Consensus 6 L~I~P~EL~F~~p~~k~~s~~LtLtN~S~~~VAFKVKTTa------P~rY~VrPn~GiI~Pgesi~I~ITlqa~~~~P~d 79 (336)
|.+.+..+.|... ...++++|.|.++.++.-...... ..-|.|.|+.-.|+||+...|.|...+. ..|.|
T Consensus 24 v~l~~TRvIy~~~---~~~~si~i~N~~~~p~LvQswv~~~~~~~~~~pFivtPPlfrl~p~~~q~lRI~~~~~-~LP~D 99 (229)
T PRK15211 24 FVLNGTRFIYDEG---RKNISFEVTNQADQTYGGQVWIDNTTQGSSTVYMVPAPPFFKVRPKEKQIIRIMKTDS-ALPKD 99 (229)
T ss_pred EEECceEEEEcCC---CceEEEEEEeCCCCcEEEEEEEecCCCCCccCCEEEcCCeEEECCCCceEEEEEECCC-CCCCC
Confidence 5566667888653 357899999999887554443311 1249999999999999999999998753 34433
Q ss_pred CCCCCeEEEEEEEcCC
Q 019733 80 LQCKDKFLIQGIVVPF 95 (336)
Q Consensus 80 ~k~kDKFLVqs~~vp~ 95 (336)
-..-|-+....+|.
T Consensus 100 --RESlf~lnv~~IP~ 113 (229)
T PRK15211 100 --RESLFWLNVQEIPP 113 (229)
T ss_pred --ceEEEEEEEEEcCC
Confidence 12345666666665
No 17
>PRK15290 lfpB fimbrial chaperone protein; Provisional
Probab=77.21 E-value=23 Score=33.86 Aligned_cols=85 Identities=14% Similarity=0.133 Sum_probs=59.5
Q ss_pred eEEeCCeeEEeccCCCeeEEEEEEEcCCC-CeEEEEEeeCC---C----CcEEEeCCceeeCCCCeEEEEEEeccCcCCC
Q 019733 6 LDIQPLELKFTFEVKKQSTCVIQLGNKSD-QCVAFKVKTTS---P----KKYCVRPNVSIIKPKAISDFTVTMQAQRVAP 77 (336)
Q Consensus 6 L~I~P~EL~F~~p~~k~~s~~LtLtN~S~-~~VAFKVKTTa---P----~rY~VrPn~GiI~Pgesi~I~ITlqa~~~~P 77 (336)
|.+++..+.|... ....+++|.|.++ .++.......+ . .-|.|-|+.-.|+||+...|.|...+....|
T Consensus 39 v~l~~TRvIy~~~---~~~~sl~v~N~~~~~p~LvQsWvd~~~~~~~~~~pFivtPPlfrl~p~~~q~lRIi~~~~~~LP 115 (243)
T PRK15290 39 VVIGGTRVVYLSN---NPDKSISVFSKEEKIPYLIQAWVDPFNKEDKSKAPFTVIPPVSRLEPSQEKVLRIIHTKGVSLP 115 (243)
T ss_pred EEECceEEEEeCC---CceEEEEEEeCCCCCcEEEEEEEecCCCCCcccCCEEEcCCeEEECCCCceEEEEEEcCCCCCC
Confidence 5667778888763 3467999999986 56766665441 1 1499999999999999999999987532345
Q ss_pred CCCCCCCeEEEEEEEcCC
Q 019733 78 PDLQCKDKFLIQGIVVPF 95 (336)
Q Consensus 78 ~d~k~kDKFLVqs~~vp~ 95 (336)
.| -.--|-+....+|+
T Consensus 116 ~D--RESlf~lnv~eIPp 131 (243)
T PRK15290 116 DD--RESVFWLNIKNIPP 131 (243)
T ss_pred CC--eeEEEEEEEEEcCC
Confidence 33 12345666666665
No 18
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=76.27 E-value=12 Score=29.35 Aligned_cols=51 Identities=24% Similarity=0.231 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHH-------hhhhHHHHHhhhhhhhcc
Q 019733 267 LAKDFEELKLKLNVMDSQLREAEHTIRKLMEAR-------KLATREKDMLKHELMAPA 317 (336)
Q Consensus 267 ~~~d~~~l~~~l~~~~~kl~ea~~~i~kl~e~~-------r~~~~e~~~l~~e~~~~~ 317 (336)
|.--+..|+.+|..+..|+.--+.....|+.|| .....|=++||.|+.++.
T Consensus 3 Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~ 60 (69)
T PF14197_consen 3 LEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALR 60 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445567788888888888888888888888887 345667788888888764
No 19
>PRK15208 long polar fimbrial chaperone LpfB; Provisional
Probab=74.90 E-value=28 Score=32.73 Aligned_cols=85 Identities=11% Similarity=0.188 Sum_probs=56.5
Q ss_pred CeEEeCCeeEEeccCCCeeEEEEEEEcCCCC-eEEEEEee-CCC----CcEEEeCCceeeCCCCeEEEEEEeccCcCCCC
Q 019733 5 LLDIQPLELKFTFEVKKQSTCVIQLGNKSDQ-CVAFKVKT-TSP----KKYCVRPNVSIIKPKAISDFTVTMQAQRVAPP 78 (336)
Q Consensus 5 LL~I~P~EL~F~~p~~k~~s~~LtLtN~S~~-~VAFKVKT-TaP----~rY~VrPn~GiI~Pgesi~I~ITlqa~~~~P~ 78 (336)
-|.+.+..+.|... ...++++|.|.+++ ++...... ... .-|.|-|+.-.|+||+...|.|..... ..|.
T Consensus 22 gv~l~~TRvI~~~~---~~~~si~i~N~~~~~~~LvQsWv~~~~~~~~~pfivtPPl~rl~p~~~q~lRIi~~~~-~lP~ 97 (228)
T PRK15208 22 GVALSSTRVIYDGS---KKEASLTVNNKSKTEEFLIQSWIDDANGNKKTPFIITPPLFKLDPTKNNVLRIVNITN-TLPQ 97 (228)
T ss_pred cEEeCceEEEEeCC---CceEEEEEEeCCCCCcEEEEEEEECCCCCccCCEEECCCeEEECCCCccEEEEEECCC-CCCC
Confidence 36777888888763 34789999999863 33333222 211 239999999999999999999987642 2343
Q ss_pred CCCCCCeEEEEEEEcCC
Q 019733 79 DLQCKDKFLIQGIVVPF 95 (336)
Q Consensus 79 d~k~kDKFLVqs~~vp~ 95 (336)
|- .--|.+....+|+
T Consensus 98 Dr--ESlf~lnv~eIP~ 112 (228)
T PRK15208 98 DR--ESVYWINVKAIPA 112 (228)
T ss_pred Ce--eEEEEEEEEEcCC
Confidence 31 2235566666664
No 20
>PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B.
Probab=74.49 E-value=9.2 Score=31.42 Aligned_cols=54 Identities=19% Similarity=0.314 Sum_probs=32.9
Q ss_pred CCeeEEEEEEEcCCCCeEEEEEeeC-----C---CCcEEE--e-----------CCceeeCCCCeEEEEEEeccC
Q 019733 20 KKQSTCVIQLGNKSDQCVAFKVKTT-----S---PKKYCV--R-----------PNVSIIKPKAISDFTVTMQAQ 73 (336)
Q Consensus 20 ~k~~s~~LtLtN~S~~~VAFKVKTT-----a---P~rY~V--r-----------Pn~GiI~Pgesi~I~ITlqa~ 73 (336)
+...+..|+|+|.+++.+.|++.-. . ...|.. . |..=.|.||++.+|.|++...
T Consensus 7 ~~~~~~~itl~N~~~~~~ty~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~vTV~ag~s~~v~vti~~p 81 (112)
T PF06280_consen 7 GNKFSFTITLHNYGDKPVTYTLSHVPVLTDKTDTEEGYSILVPPVPSISTVSFSPDTVTVPAGQSKTVTVTITPP 81 (112)
T ss_dssp -SEEEEEEEEEE-SSS-EEEEEEEE-EEEEEE--ETTEEEEEEEE----EEE---EEEEE-TTEEEEEEEEEE--
T ss_pred CCceEEEEEEEECCCCCEEEEEeeEEEEeeEeeccCCcccccccccceeeEEeCCCeEEECCCCEEEEEEEEEeh
Confidence 3446789999999999999997654 1 122221 1 222357889999999888763
No 21
>PRK10884 SH3 domain-containing protein; Provisional
Probab=73.86 E-value=13 Score=34.85 Aligned_cols=44 Identities=7% Similarity=0.035 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHhhhhHHHHHhhhh
Q 019733 269 KDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHE 312 (336)
Q Consensus 269 ~d~~~l~~~l~~~~~kl~ea~~~i~kl~e~~r~~~~e~~~l~~e 312 (336)
..+++++..++.|+.++++....+.+++.+.+....|-|.+|..
T Consensus 125 ~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~ 168 (206)
T PRK10884 125 QKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRT 168 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444455555555555555555555544444444443
No 22
>COG3121 FimC P pilus assembly protein, chaperone PapD [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=73.85 E-value=50 Score=31.21 Aligned_cols=111 Identities=11% Similarity=0.146 Sum_probs=74.4
Q ss_pred eEEeCCeeEEeccCCCeeEEEEEEEcCCCCeEEEEEeeCC-------CCcEEEeCCceeeCCCCeEEEEEEeccCcCCCC
Q 019733 6 LDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTS-------PKKYCVRPNVSIIKPKAISDFTVTMQAQRVAPP 78 (336)
Q Consensus 6 L~I~P~EL~F~~p~~k~~s~~LtLtN~S~~~VAFKVKTTa-------P~rY~VrPn~GiI~Pgesi~I~ITlqa~~~~P~ 78 (336)
+.|.+..+.|... .....++|.|.++.++.-.+..-+ ..-|.|-|+.-.|+||+...|.|.+.+. ..|.
T Consensus 29 v~i~~TRiI~~~~---~k~~sl~l~N~~~~p~LvQ~wvd~~~~~~~~~~pfvvtPPv~rl~p~~~q~vRi~~~~~-~lP~ 104 (235)
T COG3121 29 VVLGGTRIIYPAG---DKETSLTLRNDGNQPYLVQSWVDDGLEPEKSTVPFVVTPPVFRLEPGQEQQLRILYTGN-KLPA 104 (235)
T ss_pred EEecceEEEEeCC---CceeEEEEEcCCCCCEEEEEEEcCCCCCccccCCEEecCCeEEECCCCccEEEEEecCC-CCCC
Confidence 4566667888764 346899999988899999866542 3459999999999999999999999885 3454
Q ss_pred CCCCCCeEEEEEEEcCCCCCcchhhHHhhcccCCCceeEEEEEEEEeCCC
Q 019733 79 DLQCKDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVILMSPP 128 (336)
Q Consensus 79 d~k~kDKFLVqs~~vp~g~~d~dl~~~iFkk~~k~~I~ekKLrV~fv~p~ 128 (336)
| -..-|-+..-.+|.... +.... +. -.....+++++-|-++.
T Consensus 105 d--rEslf~lnv~eIPp~~~--~~~~~---n~-lq~a~r~riKlf~RP~~ 146 (235)
T COG3121 105 D--RESLFRLNVDEIPPKSK--DDKGP---NV-LQLALRSRIKLFYRPAG 146 (235)
T ss_pred C--ceeEEEEEeeecCCCCc--ccCCc---ce-EEEEeeeeeeEEECccc
Confidence 3 23556677777765321 10000 00 02345667777776654
No 23
>PRK15254 fimbrial chaperone protein StdC; Provisional
Probab=71.52 E-value=43 Score=32.00 Aligned_cols=85 Identities=18% Similarity=0.162 Sum_probs=57.4
Q ss_pred eEEeCCeeEEeccCCCeeEEEEEEEcCCC-CeEEEEEeeCC-----CCcEEEeCCceeeCCCCeEEEEEEecc--CcCCC
Q 019733 6 LDIQPLELKFTFEVKKQSTCVIQLGNKSD-QCVAFKVKTTS-----PKKYCVRPNVSIIKPKAISDFTVTMQA--QRVAP 77 (336)
Q Consensus 6 L~I~P~EL~F~~p~~k~~s~~LtLtN~S~-~~VAFKVKTTa-----P~rY~VrPn~GiI~Pgesi~I~ITlqa--~~~~P 77 (336)
+.+++..+.|... ....+++|.|.++ .++.-...... ..-|.|.|+.-.|+||+...|.|.... ....|
T Consensus 18 v~l~~TRvIy~~~---~~~~sv~v~N~~~~~p~LvQsWv~d~~~~~~~pFivtPPlfrl~p~~~~~lRI~~~~~~~~~lP 94 (239)
T PRK15254 18 VNVDRTRIIMDAP---QKTVAITLNNDDKTTPFLAQSWVTDADGVRTDALMALPPLQRIDAGQKSQVRITQVRGLTDKLP 94 (239)
T ss_pred EEECceEEEEeCC---CceEEEEEEeCCCCCcEEEEEEEecCCCCCcCCEEEcCCeEEECCCCceEEEEEEcccCCCCCC
Confidence 5667778888763 3578999999986 45554443211 124999999999999999999998763 22344
Q ss_pred CCCCCCCeEEEEEEEcCC
Q 019733 78 PDLQCKDKFLIQGIVVPF 95 (336)
Q Consensus 78 ~d~k~kDKFLVqs~~vp~ 95 (336)
.|- ..-|-+....+|.
T Consensus 95 ~DR--ESlf~lnv~~IP~ 110 (239)
T PRK15254 95 QDR--ETLFWFNVRGVPP 110 (239)
T ss_pred CCc--eEEEEEEEEEcCC
Confidence 331 3345666666664
No 24
>PF08912 Rho_Binding: Rho Binding; InterPro: IPR015008 Rho is responsible for the recognition and binding of Rho binding domain-containing proteins (such as ROCK) to Rho, resulting in activation of the GTPase which in turn modulates the phosphorylation of various signalling proteins. This domain is within an amphipathic alpha-helical coiled-coil and interacts with Rho through predominantly hydrophobic interactions []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0000910 cytokinesis, 0006468 protein phosphorylation; PDB: 1UIX_A 1S1C_X.
Probab=70.90 E-value=19 Score=28.62 Aligned_cols=33 Identities=24% Similarity=0.449 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHH
Q 019733 267 LAKDFEELKLKLNVMDSQLREAEHTIRKLMEAR 299 (336)
Q Consensus 267 ~~~d~~~l~~~l~~~~~kl~ea~~~i~kl~e~~ 299 (336)
|++|+.+|-.....|-.||.+++.-+.+++++.
T Consensus 1 L~kdv~~l~~EkeeL~~klk~~qeel~~~k~~~ 33 (69)
T PF08912_consen 1 LTKDVANLAKEKEELNNKLKKQQEELQKLKEEE 33 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 688999999999999999999999999999887
No 25
>PRK04406 hypothetical protein; Provisional
Probab=70.63 E-value=17 Score=28.98 Aligned_cols=48 Identities=23% Similarity=0.259 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHhhhhHHHHHhhhhhhhc
Q 019733 269 KDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELMAP 316 (336)
Q Consensus 269 ~d~~~l~~~l~~~~~kl~ea~~~i~kl~e~~r~~~~e~~~l~~e~~~~ 316 (336)
|-++.|..+|..||.++---+.+|..|++.=-.--++=|.|+.+|..+
T Consensus 4 ~~~~~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L 51 (75)
T PRK04406 4 KTIEQLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYV 51 (75)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445678899999999999999999999998887778888999888877
No 26
>PRK15188 fimbrial chaperone protein BcfB; Provisional
Probab=69.88 E-value=46 Score=31.60 Aligned_cols=84 Identities=12% Similarity=0.254 Sum_probs=56.3
Q ss_pred eEEeCCeeEEeccCCCeeEEEEEEEcCCCC-eEEEEEee-C-C---CCcEEEeCCceeeCCCCeEEEEEEeccCcCCCCC
Q 019733 6 LDIQPLELKFTFEVKKQSTCVIQLGNKSDQ-CVAFKVKT-T-S---PKKYCVRPNVSIIKPKAISDFTVTMQAQRVAPPD 79 (336)
Q Consensus 6 L~I~P~EL~F~~p~~k~~s~~LtLtN~S~~-~VAFKVKT-T-a---P~rY~VrPn~GiI~Pgesi~I~ITlqa~~~~P~d 79 (336)
+.+.+..+.|... ....+++|+|.+++ +..-.... + . ..-|.|.|+.-.|+||+...+.|...+. ..|.|
T Consensus 29 i~l~~TRvIy~~~---~~~~sv~i~N~~~~~p~LvQsWv~~~~~~~~~pFivtPPlfrl~~~~~~~lRI~~~~~-~lP~D 104 (228)
T PRK15188 29 IALGATRVIYPQG---SKQTSLPIINSSASNVFLIQSWVANADGSRSTDFIITPPLFVIQPKKENILRIMYVGP-SLPTD 104 (228)
T ss_pred EEECcEEEEEcCC---CceEEEEEEeCCCCccEEEEEEEecCCCCccCCEEEcCCeEEECCCCceEEEEEECCC-CCCCC
Confidence 5677778888763 34789999999854 33333222 1 1 1249999999999999999999998743 34433
Q ss_pred CCCCCeEEEEEEEcCC
Q 019733 80 LQCKDKFLIQGIVVPF 95 (336)
Q Consensus 80 ~k~kDKFLVqs~~vp~ 95 (336)
-..-|-+....+|+
T Consensus 105 --RESlf~lnv~~IP~ 118 (228)
T PRK15188 105 --RESVFYLNSKAIPS 118 (228)
T ss_pred --ceEEEEEEEEecCC
Confidence 12345566666665
No 27
>PRK15192 fimbrial chaperone BcfG; Provisional
Probab=69.45 E-value=43 Score=31.90 Aligned_cols=82 Identities=13% Similarity=0.254 Sum_probs=57.2
Q ss_pred eEEeCCeeEEeccCCCeeEEEEEEEcCCCCeEEEEEeeC----------C----CCcEEEeCCceeeCCCCeEEEEEEec
Q 019733 6 LDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTT----------S----PKKYCVRPNVSIIKPKAISDFTVTMQ 71 (336)
Q Consensus 6 L~I~P~EL~F~~p~~k~~s~~LtLtN~S~~~VAFKVKTT----------a----P~rY~VrPn~GiI~Pgesi~I~ITlq 71 (336)
|.++...+.|... ....+++|.|.++.+ |=|++. . ..-|.|-|+.-.|+||+...+.|...
T Consensus 24 i~l~~TRvIy~~~---~k~~sv~l~N~~~~p--~LvQswv~~~~~w~~~~~~~~~~PFivtPPlfrl~p~~~~~lRI~~~ 98 (234)
T PRK15192 24 VVIGGTRFIYHAG---APALSVPVSNHSEAS--WLIDTHILPGGRWPGTKNEGNITPFVVTPPLFMLSARQENSMRVVYT 98 (234)
T ss_pred EEeCceEEEEcCC---CceEEEEEEeCCCCc--EEEEEEeccCccccccCCccccCCEEEcCCeEEECCCCceEEEEEEC
Confidence 4566667888663 356899999999886 555541 1 11399999999999999999999987
Q ss_pred cCcCCCCCCCCCCeEEEEEEEcCC
Q 019733 72 AQRVAPPDLQCKDKFLIQGIVVPF 95 (336)
Q Consensus 72 a~~~~P~d~k~kDKFLVqs~~vp~ 95 (336)
+. ..|.| -.--|-+....+|.
T Consensus 99 ~~-~LP~D--RESlf~lnv~~IPp 119 (234)
T PRK15192 99 GA-PLPAD--RESLFTLSIAAIPS 119 (234)
T ss_pred CC-CCCCc--ceEEEEEEEEecCC
Confidence 53 34433 12346666666665
No 28
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=68.81 E-value=16 Score=28.23 Aligned_cols=44 Identities=23% Similarity=0.278 Sum_probs=37.2
Q ss_pred HHHHHHhHHHhhHHHHHHHHHHHHHHhhhhHHHHHhhhhhhhcc
Q 019733 274 LKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELMAPA 317 (336)
Q Consensus 274 l~~~l~~~~~kl~ea~~~i~kl~e~~r~~~~e~~~l~~e~~~~~ 317 (336)
|..+|..||.||--.+.+|..|++.=..--++=|.|+.+|..+.
T Consensus 2 le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~ 45 (69)
T PF04102_consen 2 LEERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLR 45 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55678888888888888999999988888888899999988775
No 29
>PRK15195 fimbrial chaperone protein FimC; Provisional
Probab=67.44 E-value=58 Score=30.78 Aligned_cols=84 Identities=12% Similarity=0.227 Sum_probs=55.0
Q ss_pred eEEeCCeeEEeccCCCeeEEEEEEEcCCCC--eEEEEEeeCC----CCcEEEeCCceeeCCCCeEEEEEEeccCcCCCCC
Q 019733 6 LDIQPLELKFTFEVKKQSTCVIQLGNKSDQ--CVAFKVKTTS----PKKYCVRPNVSIIKPKAISDFTVTMQAQRVAPPD 79 (336)
Q Consensus 6 L~I~P~EL~F~~p~~k~~s~~LtLtN~S~~--~VAFKVKTTa----P~rY~VrPn~GiI~Pgesi~I~ITlqa~~~~P~d 79 (336)
|.+++..+.|... ...++++|.|.++. .+.+..-... ..-|.|-|+.-.|+||+...|.|..... ..|.|
T Consensus 27 i~i~~TRvIy~~~---~~~~si~l~N~~~~~~~LvQsWv~~~~~~~~~pfivtPPlfrl~p~~~q~lRIi~~~~-~LP~D 102 (229)
T PRK15195 27 IALGATRVIYPAD---AKQTSLAIRNSHTNERYLVNSWIENSSGVKEKSFIVTPPLFVSEPKSENTLRIIYAGP-PLAAD 102 (229)
T ss_pred EEECCeEEEEeCC---CceEEEEEEeCCCCccEEEEEEecCCCCCccCCEEEcCCeEEECCCCceEEEEEECCC-CCCCC
Confidence 5677778888754 23589999999864 3433211111 1359999999999999999999988642 23433
Q ss_pred CCCCCeEEEEEEEcCC
Q 019733 80 LQCKDKFLIQGIVVPF 95 (336)
Q Consensus 80 ~k~kDKFLVqs~~vp~ 95 (336)
- ..-|.+....+|.
T Consensus 103 r--ESlf~Lnv~eIP~ 116 (229)
T PRK15195 103 R--ESLFWMNVKAIPS 116 (229)
T ss_pred e--eEEEEEEeeecCC
Confidence 1 2235555566664
No 30
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=66.09 E-value=18 Score=34.24 Aligned_cols=52 Identities=17% Similarity=0.275 Sum_probs=46.6
Q ss_pred HHHH--HHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHhhhhHHHHHhhhhhhhc
Q 019733 265 LKLA--KDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELMAP 316 (336)
Q Consensus 265 ~~~~--~d~~~l~~~l~~~~~kl~ea~~~i~kl~e~~r~~~~e~~~l~~e~~~~ 316 (336)
.++| ..|+.||..+..+|.+|++|...+...+..--.+++.|-..|.|+.-|
T Consensus 26 Nd~TGYs~Ie~LK~~i~~~E~~l~~~r~~~~~aK~~Y~~ai~~Rs~sQrEvn~L 79 (207)
T PF05546_consen 26 NDVTGYSEIEKLKKSIEELEDELEAARQEVREAKAAYDDAIQQRSSSQREVNEL 79 (207)
T ss_pred HhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455 689999999999999999999999999999999999999999998755
No 31
>PRK00846 hypothetical protein; Provisional
Probab=65.37 E-value=21 Score=28.85 Aligned_cols=46 Identities=17% Similarity=0.115 Sum_probs=38.2
Q ss_pred HHHHHHHHhHHHhhHHHHHHHHHHHHHHhhhhHHHHHhhhhhhhcc
Q 019733 272 EELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELMAPA 317 (336)
Q Consensus 272 ~~l~~~l~~~~~kl~ea~~~i~kl~e~~r~~~~e~~~l~~e~~~~~ 317 (336)
++|..+|..||+++--.+.+|..|++.=-.--++=|+|+..|..+.
T Consensus 9 ~~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~ 54 (77)
T PRK00846 9 QALEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLL 54 (77)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577888888999988899999999988777788888888887664
No 32
>TIGR03079 CH4_NH3mon_ox_B methane monooxygenase/ammonia monooxygenase, subunit B. Both ammonia oxidizers such as Nitrosomonas europaea and methanotrophs (obligate methane oxidizers) such as Methylococcus capsulatus each can grow only on their own characteristic substrate. However, both groups have the ability to oxidize both substrates, and so the relevant enzymes must be named here according to their ability to oxidze both. The protein family represented here reflects subunit B of both the particulate methane monooxygenase of methylotrophs and the ammonia monooxygenase of nitrifying bacteria.
Probab=65.08 E-value=16 Score=37.47 Aligned_cols=57 Identities=14% Similarity=0.204 Sum_probs=41.5
Q ss_pred CCCeeEEEEEEEcCCCCeEEEEEeeCC------C-CcEEEeCCce--------------eeCCCCeEEEEEEeccCcC
Q 019733 19 VKKQSTCVIQLGNKSDQCVAFKVKTTS------P-KKYCVRPNVS--------------IIKPKAISDFTVTMQAQRV 75 (336)
Q Consensus 19 ~~k~~s~~LtLtN~S~~~VAFKVKTTa------P-~rY~VrPn~G--------------iI~Pgesi~I~ITlqa~~~ 75 (336)
.++..+-+++++|.++.+|..+==+|+ + +.|...|.+. -|.||++.+|.|..|.-.+
T Consensus 280 PGR~l~~~~~VTN~g~~~vrlgEF~TA~vRFlN~~~v~~~~~~yP~~lla~GL~v~d~~pI~PGETr~v~v~aqdA~W 357 (399)
T TIGR03079 280 PGRALRVTMEITNNGDQVISIGEFTTAGIRFMNANGVRVLDPDYPRELLAEGLEVDDQSAIAPGETVEVKMEAKDALW 357 (399)
T ss_pred CCcEEEEEEEEEcCCCCceEEEeEeecceEeeCcccccccCCCChHHHhhccceeCCCCCcCCCcceEEEEEEehhhh
Confidence 356788899999999999988744444 3 3444444443 2899999999999876443
No 33
>PF07795 DUF1635: Protein of unknown function (DUF1635); InterPro: IPR012862 The members of this family include sequences that are parts of hypothetical proteins expressed by plant species. The region in question is about 170 amino acids long.
Probab=64.15 E-value=16 Score=34.68 Aligned_cols=48 Identities=29% Similarity=0.316 Sum_probs=32.8
Q ss_pred HHHHHHHHHHhHHHhhHH----HH-------HHHHHHHHHHhhhhHHHHHhhhhhhhcc
Q 019733 270 DFEELKLKLNVMDSQLRE----AE-------HTIRKLMEARKLATREKDMLKHELMAPA 317 (336)
Q Consensus 270 d~~~l~~~l~~~~~kl~e----a~-------~~i~kl~e~~r~~~~e~~~l~~e~~~~~ 317 (336)
.+|+||.+|---..+|+- |. ..|.+|..=-+.++||||..+..+--+.
T Consensus 2 s~EELRq~Ll~TTlELE~~k~~A~EElRk~eeqi~~L~~Ll~~a~~ERDEAr~qlq~Ll 60 (214)
T PF07795_consen 2 SMEELRQKLLYTTLELEATKMEANEELRKREEQIAHLKDLLKKAYQERDEAREQLQKLL 60 (214)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478888887655555544 33 3444566667889999999887776544
No 34
>PRK04325 hypothetical protein; Provisional
Probab=64.15 E-value=20 Score=28.33 Aligned_cols=47 Identities=19% Similarity=0.213 Sum_probs=37.5
Q ss_pred HHHHHHHHHHhHHHhhHHHHHHHHHHHHHHhhhhHHHHHhhhhhhhc
Q 019733 270 DFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELMAP 316 (336)
Q Consensus 270 d~~~l~~~l~~~~~kl~ea~~~i~kl~e~~r~~~~e~~~l~~e~~~~ 316 (336)
+.+.|..+|..||.|+---|.+|..|++.=-.--++=+.|+..|..+
T Consensus 3 ~~~~~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L 49 (74)
T PRK04325 3 AVQEMEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLL 49 (74)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677888888888888899999998777777778888888777
No 35
>PRK15233 putative fimbrial chaperone protein SefB; Provisional
Probab=63.52 E-value=1.3e+02 Score=29.07 Aligned_cols=79 Identities=9% Similarity=0.129 Sum_probs=52.1
Q ss_pred CeeEEeccCCCeeEEEEEEEcCCCCeEEEEEeeCC-----CCcEEEeCCceeeCCCCeEEEEEEeccCcCCCCCCCCCCe
Q 019733 11 LELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTS-----PKKYCVRPNVSIIKPKAISDFTVTMQAQRVAPPDLQCKDK 85 (336)
Q Consensus 11 ~EL~F~~p~~k~~s~~LtLtN~S~~~VAFKVKTTa-----P~rY~VrPn~GiI~Pgesi~I~ITlqa~~~~P~d~k~kDK 85 (336)
..+.|... ....+++|.|.++.+..-...... ..-|.|.|+.-.|+||+...+.|..... ..|.|- .--
T Consensus 47 TRvIy~~~---~~~~sl~i~N~~~~p~LvQsWvd~~~~~~~~pFiVtPPLfRLep~~~~~lRIi~~~~-~LP~DR--ESl 120 (246)
T PRK15233 47 TRVIYKED---APSTSFWIMNEKEYPILVQTQVYNDDKSSKAPFIVTPPILKVESNARTRLKVIPTSN-LFNKNE--ESL 120 (246)
T ss_pred eEEEEeCC---CcEEEEEEEcCCCCcEEEEEEEecCCCCccCCEEECCCeEEECCCCceEEEEEECCC-CCCcCc--eEE
Confidence 35666543 356899999988776433332211 1249999999999999999999998743 345331 123
Q ss_pred EEEEEEEcCC
Q 019733 86 FLIQGIVVPF 95 (336)
Q Consensus 86 FLVqs~~vp~ 95 (336)
|-+....+|+
T Consensus 121 fwlnv~~IPp 130 (246)
T PRK15233 121 YWLCVKGVPP 130 (246)
T ss_pred EEEEEEEcCC
Confidence 6666666765
No 36
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=63.51 E-value=8 Score=24.60 Aligned_cols=20 Identities=20% Similarity=0.486 Sum_probs=17.6
Q ss_pred HHHHHHHHHHhHHHhhHHHH
Q 019733 270 DFEELKLKLNVMDSQLREAE 289 (336)
Q Consensus 270 d~~~l~~~l~~~~~kl~ea~ 289 (336)
+++.||+++..||.+|.+..
T Consensus 2 E~~rlr~rI~dLer~L~~C~ 21 (23)
T PF04508_consen 2 EMNRLRNRISDLERQLSECR 21 (23)
T ss_pred hHHHHHHHHHHHHHHHHHHh
Confidence 68899999999999998763
No 37
>PRK02119 hypothetical protein; Provisional
Probab=61.52 E-value=30 Score=27.33 Aligned_cols=46 Identities=13% Similarity=0.100 Sum_probs=37.5
Q ss_pred HHHHHHHHHhHHHhhHHHHHHHHHHHHHHhhhhHHHHHhhhhhhhc
Q 019733 271 FEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELMAP 316 (336)
Q Consensus 271 ~~~l~~~l~~~~~kl~ea~~~i~kl~e~~r~~~~e~~~l~~e~~~~ 316 (336)
+..|..+|..||.|+---+.+|..|++.=-.--++=|.|+.+|..+
T Consensus 4 ~~~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L 49 (73)
T PRK02119 4 QQNLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYM 49 (73)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4557778888888888888899999988777777778888888877
No 38
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds. Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....
Probab=60.95 E-value=29 Score=28.06 Aligned_cols=57 Identities=21% Similarity=0.248 Sum_probs=41.4
Q ss_pred CCCeeEEEEEEEcCCCCe--------EEEEEeeCCCC--cEEEeCCceeeCCCCeEEEEEEeccCcC
Q 019733 19 VKKQSTCVIQLGNKSDQC--------VAFKVKTTSPK--KYCVRPNVSIIKPKAISDFTVTMQAQRV 75 (336)
Q Consensus 19 ~~k~~s~~LtLtN~S~~~--------VAFKVKTTaP~--rY~VrPn~GiI~Pgesi~I~ITlqa~~~ 75 (336)
.++.....++++|+++.. -++-|--|.-. .....-..+.|.||++..+.+.+.+..+
T Consensus 13 vG~d~~v~v~~~N~~~~~l~~v~~~l~~~~v~ytG~~~~~~~~~~~~~~l~p~~~~~~~~~i~p~~y 79 (107)
T PF00927_consen 13 VGQDFTVSVSFTNPSSEPLRNVSLNLCAFTVEYTGLTRDQFKKEKFEVTLKPGETKSVEVTITPSQY 79 (107)
T ss_dssp TTSEEEEEEEEEE-SSS-EECEEEEEEEEEEECTTTEEEEEEEEEEEEEE-TTEEEEEEEEE-HHSH
T ss_pred CCCCEEEEEEEEeCCcCccccceeEEEEEEEEECCcccccEeEEEcceeeCCCCEEEEEEEEEceeE
Confidence 467889999999999877 56666655533 2567788999999999999999987654
No 39
>PRK15218 fimbrial chaperone protein PegB; Provisional
Probab=59.74 E-value=1.5e+02 Score=28.12 Aligned_cols=82 Identities=13% Similarity=0.199 Sum_probs=54.8
Q ss_pred EeCCeeEEeccCCCeeEEEEEEEcCCCCeEEEEEeeCCC----------CcEEEeCCceeeCCCCeEEEEEEeccCcCCC
Q 019733 8 IQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSP----------KKYCVRPNVSIIKPKAISDFTVTMQAQRVAP 77 (336)
Q Consensus 8 I~P~EL~F~~p~~k~~s~~LtLtN~S~~~VAFKVKTTaP----------~rY~VrPn~GiI~Pgesi~I~ITlqa~~~~P 77 (336)
+.-..+.|... ....+++|.|.++.+..-....... .-|.|.|+.-.|+||+...+.|.... ...|
T Consensus 22 l~~TRvIy~~~---~~~~si~i~N~~~~pyLvQsWvd~~~~~~~~~~~~~pFivtPPlfRl~p~~~~~lRI~~~~-~~LP 97 (226)
T PRK15218 22 IYGTRIIYPAQ---KKDITVQLMNDGKRSSLIQAWIDNGDTSLPPEKLQVPFIMTPPVIRVAANSGQQLKIKKLA-NNLP 97 (226)
T ss_pred eCceEEEEcCC---CcEEEEEEEcCCCCcEEEEEEEeCCCCCCCcccccCCEEECCCeEEECCCCceEEEEEECC-CCCC
Confidence 33346777652 3467999999998764444322221 14999999999999999999999864 3345
Q ss_pred CCCCCCCeEEEEEEEcCC
Q 019733 78 PDLQCKDKFLIQGIVVPF 95 (336)
Q Consensus 78 ~d~k~kDKFLVqs~~vp~ 95 (336)
.|- .--|-+....+|.
T Consensus 98 ~DR--ESlfwlnv~~IPp 113 (226)
T PRK15218 98 GDR--ESLFYLNVLDIPP 113 (226)
T ss_pred cce--eEEEEEEEEEcCC
Confidence 431 2346666666765
No 40
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=59.57 E-value=19 Score=27.69 Aligned_cols=55 Identities=13% Similarity=0.219 Sum_probs=32.4
Q ss_pred CCeeEEEEEEEcCCCCeE-EEEEeeCCCCcEE--EeCCc-eeeCCCCeEEEEEEeccCc
Q 019733 20 KKQSTCVIQLGNKSDQCV-AFKVKTTSPKKYC--VRPNV-SIIKPKAISDFTVTMQAQR 74 (336)
Q Consensus 20 ~k~~s~~LtLtN~S~~~V-AFKVKTTaP~rY~--VrPn~-GiI~Pgesi~I~ITlqa~~ 74 (336)
+....-.++++|..+..+ ..++.-..|..+. +.|.. +.|.||++..+.+++.+..
T Consensus 4 G~~~~~~~tv~N~g~~~~~~v~~~l~~P~GW~~~~~~~~~~~l~pG~s~~~~~~V~vp~ 62 (78)
T PF10633_consen 4 GETVTVTLTVTNTGTAPLTNVSLSLSLPEGWTVSASPASVPSLPPGESVTVTFTVTVPA 62 (78)
T ss_dssp TEEEEEEEEEE--SSS-BSS-EEEEE--TTSE---EEEEE--B-TTSEEEEEEEEEE-T
T ss_pred CCEEEEEEEEEECCCCceeeEEEEEeCCCCccccCCccccccCCCCCEEEEEEEEECCC
Confidence 345677899999987543 3555555688877 55553 4799999999999998754
No 41
>smart00809 Alpha_adaptinC2 Adaptin C-terminal domain. Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. Gamma-adaptin is a subunit of the golgi adaptor. Alpha adaptin is a heterotetramer that regulates clathrin-bud formation. The carboxyl-terminal appendage of the alpha subunit regulates translocation of endocytic accessory proteins to the bud site. This Ig-fold domain is found in alpha, beta and gamma adaptins and consists of a beta-sandwich containing 7 strands in 2 beta-sheets in a greek-key topology PUBMED:10430869, PUBMED:12176391. The adaptor appendage contains an additional N-terminal strand.
Probab=58.94 E-value=69 Score=25.41 Aligned_cols=53 Identities=17% Similarity=0.266 Sum_probs=39.1
Q ss_pred CCeeEEEEEEEcCCCCeEE-EEEeeCCCCcEEEe--CCce-eeCCCCeEEEEEEecc
Q 019733 20 KKQSTCVIQLGNKSDQCVA-FKVKTTSPKKYCVR--PNVS-IIKPKAISDFTVTMQA 72 (336)
Q Consensus 20 ~k~~s~~LtLtN~S~~~VA-FKVKTTaP~rY~Vr--Pn~G-iI~Pgesi~I~ITlqa 72 (336)
+......++..|.+..++. |.+.-..|+-+.++ |..| .|.||+.+...+.+..
T Consensus 17 ~~~~~i~~~~~N~s~~~it~f~~~~avpk~~~l~l~~~s~~~l~p~~~i~q~~~i~~ 73 (104)
T smart00809 17 PGLIRITLTFTNKSPSPITNFSFQAAVPKSLKLQLQPPSSPTLPPGGQITQVLKVEN 73 (104)
T ss_pred CCeEEEEEEEEeCCCCeeeeEEEEEEcccceEEEEcCCCCCccCCCCCEEEEEEEEC
Confidence 3466788999999987766 88877777777665 5544 7999988776666654
No 42
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=58.56 E-value=32 Score=33.72 Aligned_cols=66 Identities=20% Similarity=0.220 Sum_probs=42.2
Q ss_pred cccccccCCCchhHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHhhhhHHHHHhhhhhh
Q 019733 249 PAEDASELKPAKDILELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELM 314 (336)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~kl~ea~~~i~kl~e~~r~~~~e~~~l~~e~~ 314 (336)
.+..+++....++-.+.++.++.+++..+|.-|+.+.++...-|..++++--.+-.|=.+||+|+.
T Consensus 25 ~a~~~~~~i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~ 90 (265)
T COG3883 25 FAALLSDKIQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIA 90 (265)
T ss_pred hhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566656666666777777777777777777777777666666666655554555555555544
No 43
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=57.84 E-value=36 Score=26.01 Aligned_cols=36 Identities=17% Similarity=0.231 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHH
Q 019733 263 LELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEA 298 (336)
Q Consensus 263 ~~~~~~~d~~~l~~~l~~~~~kl~ea~~~i~kl~e~ 298 (336)
...+|..||+.|++|++.|.+...-....|....+|
T Consensus 4 kid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~E 39 (56)
T PF04728_consen 4 KIDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEE 39 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346789999999999999999877777777666554
No 44
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=56.25 E-value=54 Score=28.35 Aligned_cols=54 Identities=24% Similarity=0.318 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHH---hhhhHHHHHhhhhhhhc
Q 019733 263 LELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEAR---KLATREKDMLKHELMAP 316 (336)
Q Consensus 263 ~~~~~~~d~~~l~~~l~~~~~kl~ea~~~i~kl~e~~---r~~~~e~~~l~~e~~~~ 316 (336)
.+..+...+..||..|+.++..-++|..-|.+|+.+. +..-.+-+.|++|+.-+
T Consensus 24 ~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l 80 (120)
T PF12325_consen 24 QLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEEL 80 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456678888899999999999999999999888776 66667777788777543
No 45
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=56.19 E-value=53 Score=29.28 Aligned_cols=55 Identities=18% Similarity=0.253 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHhhhhHHHHHhhhhhhhc
Q 019733 262 ILELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELMAP 316 (336)
Q Consensus 262 ~~~~~~~~d~~~l~~~l~~~~~kl~ea~~~i~kl~e~~r~~~~e~~~l~~e~~~~ 316 (336)
+.+.|+.+....+..++..|..+|...+..+.++|++-...-.+|+++.....-+
T Consensus 77 ~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l 131 (177)
T PF13870_consen 77 QILTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKL 131 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777777788888888888888888888888888888888888887766544
No 46
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=55.67 E-value=24 Score=34.99 Aligned_cols=51 Identities=24% Similarity=0.294 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHhhhhHHHHHhhhhhhh
Q 019733 265 LKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELMA 315 (336)
Q Consensus 265 ~~~~~d~~~l~~~l~~~~~kl~ea~~~i~kl~e~~r~~~~e~~~l~~e~~~ 315 (336)
..+....++...+|...+.+|.+.+..|..|+.+-...++|++.|++++..
T Consensus 224 ~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~ 274 (344)
T PF12777_consen 224 EEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEE 274 (344)
T ss_dssp HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444566777788888888888888888888888888889999999988764
No 47
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=53.92 E-value=51 Score=26.07 Aligned_cols=45 Identities=18% Similarity=0.234 Sum_probs=32.0
Q ss_pred eEEEEEEEcCCCCeEEEEEeeCCCCcEE-EeCCceeeCCCCeEEEEEEe
Q 019733 23 STCVIQLGNKSDQCVAFKVKTTSPKKYC-VRPNVSIIKPKAISDFTVTM 70 (336)
Q Consensus 23 ~s~~LtLtN~S~~~VAFKVKTTaP~rY~-VrPn~GiI~Pgesi~I~ITl 70 (336)
..-.|+|.|.....+.|.|.... |. -.|-.=.|.||++..+.+-+
T Consensus 20 g~l~l~l~N~g~~~~~~~v~~~~---y~~~~~~~~~v~ag~~~~~~w~l 65 (89)
T PF05506_consen 20 GNLRLTLSNPGSAAVTFTVYDNA---YGGGGPWTYTVAAGQTVSLTWPL 65 (89)
T ss_pred CEEEEEEEeCCCCcEEEEEEeCC---cCCCCCEEEEECCCCEEEEEEee
Confidence 36789999999999999999732 21 22333345668888877766
No 48
>PF08606 Prp19: Prp19/Pso4-like; InterPro: IPR013915 This region is found specifically in PRP19-like protein. The region represented by this protein covers the sequence implicated in self-interaction and a coiled-coiled motif []. PRP19-like proteins form an oligomer that is necessary for spliceosome assembly [].
Probab=53.70 E-value=58 Score=25.97 Aligned_cols=46 Identities=22% Similarity=0.274 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHhhhhHHHHHhhhhhhh
Q 019733 263 LELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELMA 315 (336)
Q Consensus 263 ~~~~~~~d~~~l~~~l~~~~~kl~ea~~~i~kl~e~~r~~~~e~~~l~~e~~~ 315 (336)
....+.+.++..+.+|+.-==+-+-|-.+|.+| ++|||.+++++.-
T Consensus 23 E~f~LRk~l~~~rqELs~aLYq~DAA~RViArl-------~kErd~ar~~l~~ 68 (70)
T PF08606_consen 23 ENFTLRKQLDQTRQELSHALYQHDAACRVIARL-------LKERDEAREALAE 68 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-------HHhHHHHHHHHHh
Confidence 344566777777777776666667788899887 5677777777653
No 49
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=53.68 E-value=48 Score=28.43 Aligned_cols=57 Identities=25% Similarity=0.349 Sum_probs=35.1
Q ss_pred CCCchhH-HHHHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHhhhhHHHHHhhhhhhh
Q 019733 256 LKPAKDI-LELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELMA 315 (336)
Q Consensus 256 ~~~~~~~-~~~~~~~d~~~l~~~l~~~~~kl~ea~~~i~kl~e~~r~~~~e~~~l~~e~~~ 315 (336)
+.++.++ .+..+..+.++++..++.+..+.+- +-..|.+....-..+|..|+.|+..
T Consensus 52 ~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~---a~~~l~~~e~sw~~qk~~le~e~~~ 109 (132)
T PF07926_consen 52 VKHAEDIKELQQLREELQELQQEINELKAEAES---AKAELEESEASWEEQKEQLEKELSE 109 (132)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3444444 4455556666666666666664444 4445566666667788888888754
No 50
>PRK15274 putative periplasmic fimbrial chaperone protein SteC; Provisional
Probab=53.11 E-value=2.2e+02 Score=27.56 Aligned_cols=80 Identities=15% Similarity=0.175 Sum_probs=53.5
Q ss_pred CeeEEeccCCCeeEEEEEEEcCCCC-eEEEEEeeCCC------CcEEEeCCceeeCCCCeEEEEEEecc-CcCCCCCCCC
Q 019733 11 LELKFTFEVKKQSTCVIQLGNKSDQ-CVAFKVKTTSP------KKYCVRPNVSIIKPKAISDFTVTMQA-QRVAPPDLQC 82 (336)
Q Consensus 11 ~EL~F~~p~~k~~s~~LtLtN~S~~-~VAFKVKTTaP------~rY~VrPn~GiI~Pgesi~I~ITlqa-~~~~P~d~k~ 82 (336)
..+.|... ....+|+|.|.++. ++.-....... .-|.|.|+.-.|+||+...|.|...+ ....|.|-
T Consensus 33 TRvIy~e~---~~~~sv~v~N~~~~~p~LVQsWvdd~~~~~~~~pFivtPPLfRlep~~~q~lRI~~~~~~~~LP~DR-- 107 (257)
T PRK15274 33 TRVIFNGN---ENSITVTLKNGNATLPYLAQAWLEDDKFAKDTRYFTALPPLQRIEPKSDGQVKVQPLPAAASLPQDR-- 107 (257)
T ss_pred eEEEEeCC---CceEEEEEEeCCCCCcEEEEEEccCCCCCcccCCEEEcCCeEEECCCCceEEEEEECCCCCCCCCce--
Confidence 46777653 34689999999865 55444422111 24999999999999999999999875 23445331
Q ss_pred CCeEEEEEEEcCC
Q 019733 83 KDKFLIQGIVVPF 95 (336)
Q Consensus 83 kDKFLVqs~~vp~ 95 (336)
.--|-+....+|+
T Consensus 108 ESlFwlNv~eIPp 120 (257)
T PRK15274 108 ESLFYFNVREIPP 120 (257)
T ss_pred eEEEEEEEEEcCC
Confidence 2335666666665
No 51
>KOG2685 consensus Cystoskeletal protein Tektin [Cytoskeleton]
Probab=52.82 E-value=40 Score=35.07 Aligned_cols=53 Identities=21% Similarity=0.399 Sum_probs=42.2
Q ss_pred CchhHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHhhhhHHHHHhhhhhhhcc
Q 019733 258 PAKDILELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELMAPA 317 (336)
Q Consensus 258 ~~~~~~~~~~~~d~~~l~~~l~~~~~kl~ea~~~i~kl~e~~r~~~~e~~~l~~e~~~~~ 317 (336)
.-.|.....|...|++|++.+..|..||+||+.....|=. .|+.|+.|++.-+
T Consensus 340 LCrD~AQ~~L~~EV~~l~~t~~~L~~kL~eA~~~l~~L~~-------~~~rLe~di~~k~ 392 (421)
T KOG2685|consen 340 LCRDQAQYRLVDEVHELDDTVAALKEKLDEAEDSLKLLVN-------HRARLERDIAIKA 392 (421)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhh
Confidence 3456667789999999999999999999999999988854 3456777766543
No 52
>PF02883 Alpha_adaptinC2: Adaptin C-terminal domain; InterPro: IPR008152 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. AP (adaptor protein) complexes are found in coated vesicles and clathrin-coated pits. AP complexes connect cargo proteins and lipids to clathrin at vesicle budding sites, as well as binding accessory proteins that regulate coat assembly and disassembly (such as AP180, epsins and auxilin). There are different AP complexes in mammals. AP1 is responsible for the transport of lysosomal hydrolases between the TGN and endosomes []. AP2 associates with the plasma membrane and is responsible for endocytosis []. AP3 is responsible for protein trafficking to lysosomes and other related organelles []. AP4 is less well characterised. AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). For example, in AP1 these subunits are gamma-1-adaptin, beta-1-adaptin, mu-1 and sigma-1, while in AP2 they are alpha-adaptin, beta-2-adaptin, mu-2 and sigma-2. Each subunit has a specific function. Adaptins recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal ear (appendage) domains. Mu recognises tyrosine-based sorting signals within the cytoplasmic domains of transmembrane cargo proteins []. One function of clathrin and AP2 complex-mediated endocytosis is to regulate the number of GABA(A) receptors available at the cell surface []. GGAs (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) are a family of monomeric clathrin adaptor proteins that are conserved from yeasts to humans. GGAs regulate clathrin-mediated the transport of proteins (such as mannose 6-phosphate receptors) from the TGN to endosomes and lysosomes through interactions with TGN-sorting receptors, sometimes in conjunction with AP-1 [, ]. GGAs bind cargo, membranes, clathrin and accessory factors. GGA1, GGA2 and GGA3 all contain a domain homologous to the ear domain of gamma-adaptin. GGAs are composed of a single polypeptide with four domains: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The VHS domain is responsible for endocytosis and signal transduction, recognising transmembrane cargo through the ACLL sequence in the cytoplasmic domains of sorting receptors []. The GAT domain (also found in Tom1 proteins) interacts with ARF (ADP-ribosylation factor) to regulate membrane trafficking [], and with ubiquitin for receptor sorting []. The hinge region contains a clathrin box for recognition and binding to clathrin, similar to that found in AP adaptins. The GAE domain is similar to the AP gamma-adaptin ear domain, and is responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. This entry represents a beta-sandwich structural motif found in the appendage (ear) domain of alpha-, beta- and gamma-adaptin from AP clathrin adaptor complexes, and the GAE (gamma-adaptin ear) domain of GGA adaptor proteins. These domains have an immunoglobulin-like beta-sandwich fold containing 7 or 8 strands in 2 beta-sheets in a Greek key topology [, ]. Although these domains share a similar fold, there is little sequence identity between the alpha/beta-adaptins and gamma-adaptin/GAE. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030131 clathrin adaptor complex; PDB: 3MNM_B 3ZY7_B 1GYU_A 1GYW_B 2A7B_A 1GYV_A 2E9G_A 1E42_B 2G30_A 2IV9_B ....
Probab=52.23 E-value=1.3e+02 Score=24.45 Aligned_cols=74 Identities=22% Similarity=0.284 Sum_probs=42.5
Q ss_pred CCeeEEEEEEEcCCCCeEE-EEEeeCCCCc--EEEeCC-ceeeCCCCeEEEEEEecc-CcCCCCCCCCCCeEEEEEEEc
Q 019733 20 KKQSTCVIQLGNKSDQCVA-FKVKTTSPKK--YCVRPN-VSIIKPKAISDFTVTMQA-QRVAPPDLQCKDKFLIQGIVV 93 (336)
Q Consensus 20 ~k~~s~~LtLtN~S~~~VA-FKVKTTaP~r--Y~VrPn-~GiI~Pgesi~I~ITlqa-~~~~P~d~k~kDKFLVqs~~v 93 (336)
+....-.++..|.+..++. |.+.-..|+. ..+.|. ...|.|+..+.-.+.+.. ....+.....+=++.|.+..-
T Consensus 23 ~~~~~i~~~f~N~s~~~it~f~~q~avpk~~~l~l~~~s~~~i~p~~~i~Q~~~v~~~~~~~~~~~~l~~~~~vsy~~~ 101 (115)
T PF02883_consen 23 PNQGRIKLTFGNKSSQPITNFSFQAAVPKSFKLQLQPPSSSTIPPGQQITQVIKVENSPFSEPTPKPLKPRLRVSYNVG 101 (115)
T ss_dssp TTEEEEEEEEEE-SSS-BEEEEEEEEEBTTSEEEEEESS-SSB-TTTEEEEEEEEEESS-BSTTSSTTEEEEEEEEEET
T ss_pred CCEEEEEEEEEECCCCCcceEEEEEEeccccEEEEeCCCCCeeCCCCeEEEEEEEEEeecccCCCCCcCeEEEEEEEEC
Confidence 4577889999999887766 6666555554 455566 569999988776665544 111121223344555555553
No 53
>PF05064 Nsp1_C: Nsp1-like C-terminal region; InterPro: IPR007758 The NSP1-like protein appears to be an essential component of the nuclear pore complex, for example preribosome nuclear export requires the Nup82p-Nup159p-Nsp1p complex. The C-terminal of Nsp1 is involved in binding Nup82 [], probably via coiled-coil formation [, ]. The family is related to the rotavirus nonstructural protein NSP1 which is the least conserved protein in the rotavirus genome. Its function in the replication process is not fully understood.; GO: 0017056 structural constituent of nuclear pore, 0005643 nuclear pore; PDB: 3T97_C.
Probab=51.90 E-value=21 Score=30.27 Aligned_cols=66 Identities=26% Similarity=0.221 Sum_probs=33.3
Q ss_pred cccccCCCchhHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHhhhhHHHHHhhhhhhhc
Q 019733 251 EDASELKPAKDILELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELMAP 316 (336)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~kl~ea~~~i~kl~e~~r~~~~e~~~l~~e~~~~ 316 (336)
-.|.|++|.=+..+..=++.|.+.-.+++.-|..|-+....|.+|..+-.......+.|.|+|.++
T Consensus 18 k~Leeiin~W~~eLe~q~k~F~~qA~~V~~wDr~Lv~n~~~I~~L~~~v~~~~~~Q~~ld~~L~~i 83 (116)
T PF05064_consen 18 KTLEEIINKWNKELEEQEKEFNEQATQVNAWDRQLVENGEKISKLYSEVQKAESEQKRLDQELDFI 83 (116)
T ss_dssp -------------------------------TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456678888888888889999999999999999999999999999999999999999999999875
No 54
>PRK15224 pili assembly chaperone protein SafB; Provisional
Probab=51.75 E-value=2.2e+02 Score=27.26 Aligned_cols=79 Identities=13% Similarity=0.173 Sum_probs=53.5
Q ss_pred eCCeeEEeccCCCeeEEEEEEEcCCCCeEEEEEee----CC---CCcEEEeCCceeeCCCCeEEEEEEeccCcCCCCCCC
Q 019733 9 QPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKT----TS---PKKYCVRPNVSIIKPKAISDFTVTMQAQRVAPPDLQ 81 (336)
Q Consensus 9 ~P~EL~F~~p~~k~~s~~LtLtN~S~~~VAFKVKT----Ta---P~rY~VrPn~GiI~Pgesi~I~ITlqa~~~~P~d~k 81 (336)
+-..+.|... ....+++|.|.++.+ |=|++ .. ..-|.|.|+.-.|+|++...+.|.... ...|.|-
T Consensus 33 ~~TRvIy~~~---~k~~sl~v~N~~~~p--yLvQsWvd~~~~~~~~pFivtPPlfRlep~~~~~lRI~~~~-~~LP~DR- 105 (237)
T PRK15224 33 GATRVIYHAG---TAGATLSVSNPQNYP--ILVQSSVKAADKSSPAPFLVMPPLFRLEANQQSQLRIVRTG-GDMPTDR- 105 (237)
T ss_pred CceEEEEeCC---CcEEEEEEEcCCCCc--EEEEEEEeCCCCCccCCEEECCCeEEECCCCceEEEEEECC-CCCCCce-
Confidence 3346777652 346899999998876 44443 11 123999999999999999999999874 3455431
Q ss_pred CCCeEEEEEEEcCC
Q 019733 82 CKDKFLIQGIVVPF 95 (336)
Q Consensus 82 ~kDKFLVqs~~vp~ 95 (336)
.--|-+....+|+
T Consensus 106 -ESlFwlnv~~IPp 118 (237)
T PRK15224 106 -ETLQWVCIKAVPP 118 (237)
T ss_pred -eEEEEEEEEEcCC
Confidence 2235666666665
No 55
>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function.
Probab=51.01 E-value=1.5e+02 Score=25.37 Aligned_cols=29 Identities=21% Similarity=0.347 Sum_probs=23.6
Q ss_pred EEeccCCCeeEEEEEEEcCCCCeEEEEEe
Q 019733 14 KFTFEVKKQSTCVIQLGNKSDQCVAFKVK 42 (336)
Q Consensus 14 ~F~~p~~k~~s~~LtLtN~S~~~VAFKVK 42 (336)
.+....+....-.++|+|.+++.+.|+|.
T Consensus 20 dL~~~P~q~~~l~v~i~N~s~~~~tv~v~ 48 (121)
T PF06030_consen 20 DLKVKPGQKQTLEVRITNNSDKEITVKVS 48 (121)
T ss_pred EEEeCCCCEEEEEEEEEeCCCCCEEEEEE
Confidence 34456677788899999999999999975
No 56
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=50.64 E-value=38 Score=36.87 Aligned_cols=63 Identities=24% Similarity=0.221 Sum_probs=56.3
Q ss_pred ccCCCchhHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHhhhhHHHHHhhhhhhhc
Q 019733 254 SELKPAKDILELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELMAP 316 (336)
Q Consensus 254 ~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~kl~ea~~~i~kl~e~~r~~~~e~~~l~~e~~~~ 316 (336)
=|.+|+-|++.-+|-..|++|-..-.+|.-+|+-++++-.||-|.-|---.|-.++|+|++.-
T Consensus 314 LetKNALNiVKNDLIakVDeL~~E~~vLrgElea~kqak~Klee~i~elEEElk~~k~ea~~a 376 (832)
T KOG2077|consen 314 LETKNALNIVKNDLIAKVDELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELKKAKAEAEDA 376 (832)
T ss_pred HhhhhHHHHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 348899999999999999999999999999999999999999988888888888899998764
No 57
>PRK15253 putative fimbrial assembly chaperone protein StcB; Provisional
Probab=48.16 E-value=2.6e+02 Score=26.81 Aligned_cols=79 Identities=14% Similarity=0.238 Sum_probs=53.3
Q ss_pred CeeEEeccCCCeeEEEEEEEcCCCCeEEEEEeeCCC----------CcEEEeCCceeeCCCCeEEEEEEeccCcCCCCCC
Q 019733 11 LELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSP----------KKYCVRPNVSIIKPKAISDFTVTMQAQRVAPPDL 80 (336)
Q Consensus 11 ~EL~F~~p~~k~~s~~LtLtN~S~~~VAFKVKTTaP----------~rY~VrPn~GiI~Pgesi~I~ITlqa~~~~P~d~ 80 (336)
..+.|... ....+++|.|.++.+..-.....+. .-|.|.|+.-.|+||+...|.|...+ ...|.|
T Consensus 40 TRvIy~~~---~k~~sv~i~N~~~~pyLvQsWvd~~~~~~~~~~~~~pFivtPPlfRl~p~~~~~lRI~~~~-~~LP~D- 114 (242)
T PRK15253 40 TRVIYPAE---KKEVVVQLVNQGEQASLVQSWIDDGNTSLPPEKIQVPFMLTPPVARVAAESGQQIKIKKMP-NSLPDN- 114 (242)
T ss_pred eEEEEeCC---CceEEEEEEcCCCCcEEEEEEEECCCCCCCcccccCCEEECCCeEEECCCCceEEEEEECC-CCCCcc-
Confidence 45777653 3467999999998764444322211 24999999999999999999998764 334533
Q ss_pred CCCCeEEEEEEEcCC
Q 019733 81 QCKDKFLIQGIVVPF 95 (336)
Q Consensus 81 k~kDKFLVqs~~vp~ 95 (336)
-.--|-+....+|+
T Consensus 115 -RESlfwlnv~~IPp 128 (242)
T PRK15253 115 -KESLFYLNVLDIPP 128 (242)
T ss_pred -eeEEEEEEEEEcCC
Confidence 12345666666665
No 58
>PF11611 DUF4352: Domain of unknown function (DUF4352); InterPro: IPR021652 This entry is represented by Bacteriophage A118, Gp32. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a group of putative lipoproteins of unknown function.; PDB: 3CFU_A.
Probab=47.88 E-value=77 Score=25.52 Aligned_cols=52 Identities=19% Similarity=0.193 Sum_probs=33.0
Q ss_pred CeeEEEEEEEcCCCCeEE-----EEEeeCCCCcEEEeC---------CceeeCCCCeEEEEEEecc
Q 019733 21 KQSTCVIQLGNKSDQCVA-----FKVKTTSPKKYCVRP---------NVSIIKPKAISDFTVTMQA 72 (336)
Q Consensus 21 k~~s~~LtLtN~S~~~VA-----FKVKTTaP~rY~VrP---------n~GiI~Pgesi~I~ITlqa 72 (336)
+-..-.++++|.++..+. |++.+..-..|.... ..+-|.||+++...|.+.-
T Consensus 36 ~fv~v~v~v~N~~~~~~~~~~~~f~l~d~~g~~~~~~~~~~~~~~~~~~~~i~pG~~~~g~l~F~v 101 (123)
T PF11611_consen 36 KFVVVDVTVKNNGDEPLDFSPSDFKLYDSDGNKYDPDFSASSNDNDLFSETIKPGESVTGKLVFEV 101 (123)
T ss_dssp EEEEEEEEEEE-SSS-EEEEGGGEEEE-TT--B--EEE-CCCTTTB--EEEE-TT-EEEEEEEEEE
T ss_pred EEEEEEEEEEECCCCcEEecccceEEEeCCCCEEcccccchhccccccccEECCCCEEEEEEEEEE
Confidence 446678999999998776 678877767776544 3579999999999988865
No 59
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=47.56 E-value=67 Score=32.57 Aligned_cols=54 Identities=11% Similarity=0.166 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHhhhhHHHHHhhhhhhhc
Q 019733 263 LELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELMAP 316 (336)
Q Consensus 263 ~~~~~~~d~~~l~~~l~~~~~kl~ea~~~i~kl~e~~r~~~~e~~~l~~e~~~~ 316 (336)
++.++..+...++.+|+.+..+.++|...|..+..+=-.-+.|-+..|+||.--
T Consensus 267 qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emeer 320 (359)
T PF10498_consen 267 QLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEER 320 (359)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 566777778888889999999999999999999988877788999999999764
No 60
>PF02753 PapD_C: Pili assembly chaperone PapD, C-terminal domain; InterPro: IPR016148 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors. Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the C-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of eight strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2UY7_C 2UY6_A 2W07_A 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 1PDK_A 2XG4_A ....
Probab=47.06 E-value=18 Score=27.09 Aligned_cols=44 Identities=18% Similarity=0.218 Sum_probs=28.0
Q ss_pred EEEEcCCCCeEEEE-EeeCCCCcEEEeCCceeeCCCCeEEEEEEe
Q 019733 27 IQLGNKSDQCVAFK-VKTTSPKKYCVRPNVSIIKPKAISDFTVTM 70 (336)
Q Consensus 27 LtLtN~S~~~VAFK-VKTTaP~rY~VrPn~GiI~Pgesi~I~ITl 70 (336)
|++.|+|-.+|.|- ++....++=.--...++|.|+++..+.+.-
T Consensus 1 L~v~NpTPy~vtl~~~~~~~~~~~~~~~~~~mi~P~s~~~~~~~~ 45 (68)
T PF02753_consen 1 LTVKNPTPYYVTLSSLKLNGGGKKKKIDNSGMIAPFSSKSFPLPA 45 (68)
T ss_dssp EEEEE-SSS-EEEEEEEETHHHCCEECCCETEE-TTEEEEEETST
T ss_pred CEEECCCCcEEEEEeeeecccccccccCCceEECCCCceEEeccC
Confidence 68999999999997 455433332233444499999999887643
No 61
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=46.97 E-value=86 Score=29.06 Aligned_cols=52 Identities=23% Similarity=0.261 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHhhhhHHHHHhhhhhhh
Q 019733 264 ELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELMA 315 (336)
Q Consensus 264 ~~~~~~d~~~l~~~l~~~~~kl~ea~~~i~kl~e~~r~~~~e~~~l~~e~~~ 315 (336)
.-.|-++|.+||.+..-.+..+.+...-..+|+|-=....+|++.|+++|..
T Consensus 29 IksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~ 80 (201)
T PF13851_consen 29 IKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKN 80 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666666666666666777777777888899999988865
No 62
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=46.86 E-value=97 Score=26.81 Aligned_cols=35 Identities=31% Similarity=0.426 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHH
Q 019733 265 LKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEAR 299 (336)
Q Consensus 265 ~~~~~d~~~l~~~l~~~~~kl~ea~~~i~kl~e~~ 299 (336)
.++..+++.|+.++..++.++.-++.....|..+-
T Consensus 69 ~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~ 103 (151)
T PF11559_consen 69 ERLQNDVERLKEQLEELERELASAEEKERQLQKQL 103 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555554444444444443333
No 63
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=46.65 E-value=1e+02 Score=23.80 Aligned_cols=34 Identities=24% Similarity=0.348 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHh
Q 019733 267 LAKDFEELKLKLNVMDSQLREAEHTIRKLMEARK 300 (336)
Q Consensus 267 ~~~d~~~l~~~l~~~~~kl~ea~~~i~kl~e~~r 300 (336)
+.+.+...|+-.-+++++|++|+.-...|.++=.
T Consensus 16 ~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~ 49 (61)
T PF08826_consen 16 IQEELTKVKSANLAFESKLQEAEKRNRELEQEIE 49 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666777777777776666654433
No 64
>PRK02793 phi X174 lysis protein; Provisional
Probab=46.41 E-value=65 Score=25.29 Aligned_cols=44 Identities=25% Similarity=0.216 Sum_probs=35.1
Q ss_pred HHHHHHHhHHHhhHHHHHHHHHHHHHHhhhhHHHHHhhhhhhhc
Q 019733 273 ELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELMAP 316 (336)
Q Consensus 273 ~l~~~l~~~~~kl~ea~~~i~kl~e~~r~~~~e~~~l~~e~~~~ 316 (336)
+|..+|..||.++--.+.+|..|++.=-.--++=|.|+.+|..+
T Consensus 5 ~~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L 48 (72)
T PRK02793 5 SLEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLL 48 (72)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36677888888888888899999988777677778888888776
No 65
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=46.36 E-value=44 Score=30.69 Aligned_cols=46 Identities=24% Similarity=0.383 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHhHHHhhHHHHHHHHHHHH------HHhhhhHHHHHhhhhhh
Q 019733 269 KDFEELKLKLNVMDSQLREAEHTIRKLME------ARKLATREKDMLKHELM 314 (336)
Q Consensus 269 ~d~~~l~~~l~~~~~kl~ea~~~i~kl~e------~~r~~~~e~~~l~~e~~ 314 (336)
..++.|+.++..++.++.+.+..|..++. +|....++.+.|++|..
T Consensus 69 ~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~~eR~~~l~~l~~l~~~~~ 120 (188)
T PF03962_consen 69 NKLEKLQKEIEELEKKIEELEEKIEEAKKGREESEEREELLEELEELKKELK 120 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555555555543 33333444444444443
No 66
>PRK00295 hypothetical protein; Provisional
Probab=45.87 E-value=65 Score=25.02 Aligned_cols=42 Identities=17% Similarity=0.177 Sum_probs=30.3
Q ss_pred HHHHHhHHHhhHHHHHHHHHHHHHHhhhhHHHHHhhhhhhhc
Q 019733 275 KLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELMAP 316 (336)
Q Consensus 275 ~~~l~~~~~kl~ea~~~i~kl~e~~r~~~~e~~~l~~e~~~~ 316 (336)
..+|..||.|+--.|.+|..|++.=-.--++=|.|+..|..+
T Consensus 4 e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L 45 (68)
T PRK00295 4 EERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAAL 45 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777777777788888887666666667777777766
No 67
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=45.83 E-value=61 Score=27.37 Aligned_cols=41 Identities=29% Similarity=0.349 Sum_probs=30.7
Q ss_pred HHHHHHHhHHHhhHHHHHHHHHHHHHHhhhhHHHHHhhhhh
Q 019733 273 ELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHEL 313 (336)
Q Consensus 273 ~l~~~l~~~~~kl~ea~~~i~kl~e~~r~~~~e~~~l~~e~ 313 (336)
-|-+.+..++.+++++...+.+|+...+..-.|-..||+|.
T Consensus 77 ~L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~E~ 117 (118)
T PF13815_consen 77 YLSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKKES 117 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 36666777777777777777788777777777777788774
No 68
>PRK00736 hypothetical protein; Provisional
Probab=45.66 E-value=66 Score=25.00 Aligned_cols=41 Identities=20% Similarity=0.259 Sum_probs=31.1
Q ss_pred HHHHhHHHhhHHHHHHHHHHHHHHhhhhHHHHHhhhhhhhc
Q 019733 276 LKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELMAP 316 (336)
Q Consensus 276 ~~l~~~~~kl~ea~~~i~kl~e~~r~~~~e~~~l~~e~~~~ 316 (336)
.+|..||.|+--.|.+|..|++.=-.--++=|.|+..|..+
T Consensus 5 ~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L 45 (68)
T PRK00736 5 ERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDAL 45 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777788888888777677778888887776
No 69
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=44.87 E-value=66 Score=34.55 Aligned_cols=60 Identities=18% Similarity=0.289 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHH------------------HHhhhhHHHHHhhhhhhhcccccccCC
Q 019733 265 LKLAKDFEELKLKLNVMDSQLREAEHTIRKLME------------------ARKLATREKDMLKHELMAPAITTLPFG 324 (336)
Q Consensus 265 ~~~~~d~~~l~~~l~~~~~kl~ea~~~i~kl~e------------------~~r~~~~e~~~l~~e~~~~~~~~~~~~ 324 (336)
..+..+.+++..++..++.++++|+..+..|++ +.+..-++++..++++.-++-..+||.
T Consensus 219 ~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~~~GG~~~~~r~~Le~ei~~le~e~~e~~~~l~~l~~~~~p~~ 296 (650)
T TIGR03185 219 KEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRSEGGDLFEEREQLERQLKEIEAARKANRAQLRELAADPLPLL 296 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHh
Confidence 344455666666666666666666666665555 333334445555666666666777774
No 70
>PRK15308 putative fimbrial protein TcfA; Provisional
Probab=44.76 E-value=2.6e+02 Score=26.75 Aligned_cols=86 Identities=12% Similarity=0.125 Sum_probs=62.0
Q ss_pred CCCeEEeCCeeEEeccCCCeeEEEEEEEcCCCCeEEEEEee---CCC---------------CcEEEeCCceeeCCCCeE
Q 019733 3 EELLDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKT---TSP---------------KKYCVRPNVSIIKPKAIS 64 (336)
Q Consensus 3 s~LL~I~P~EL~F~~p~~k~~s~~LtLtN~S~~~VAFKVKT---TaP---------------~rY~VrPn~GiI~Pgesi 64 (336)
+--|.|.|-.+.+... .+..+.++|+|.++.+..++|.. ++| ..-.+-|..-.|.||++.
T Consensus 15 aa~l~V~Pi~~~i~a~--~~~~~~v~V~N~g~~~~~vqV~v~r~~~PG~~~e~~~~~~~~~~~eLiaSP~~l~L~pg~~q 92 (234)
T PRK15308 15 RANMLVYPMAAEIGAG--REEATSLFVYSKSDHTQYVRTRIKRIEHPATPQEKEVPAGNDIETGLVVSPEKFALPAGTTR 92 (234)
T ss_pred hceEEEEEeEEEecCC--CcceEEEEEEeCCCCcEEEEEEEEEEcCCCCCCCcccccccCCCCcEEEcCceeEECCCCeE
Confidence 3457788888777542 24568999999999988877642 221 236788999999999999
Q ss_pred EEEEEeccCcCCCCCCCCCCeEEEEEEEcCCC
Q 019733 65 DFTVTMQAQRVAPPDLQCKDKFLIQGIVVPFG 96 (336)
Q Consensus 65 ~I~ITlqa~~~~P~d~k~kDKFLVqs~~vp~g 96 (336)
.|.+..... + ....-|.|....++..
T Consensus 93 ~IRli~lg~---~---~kE~~YRl~~~pvp~~ 118 (234)
T PRK15308 93 TVRVISLQA---P---EREEAWRVYFEPVAEL 118 (234)
T ss_pred EEEEEEcCC---C---CcEEEEEEEEEecCCc
Confidence 999887652 2 1245588888888753
No 71
>PF04744 Monooxygenase_B: Monooxygenase subunit B protein; InterPro: IPR006833 Ammonia monooxygenase and the particulate methane monooxygenase are both integral membrane proteins, occurring in ammonia oxidisers and methanotrophs respectively, which are thought to be evolutionarily related []. These enzymes have a relatively wide substrate specificity and can catalyse the oxidation of a range of substrates including ammonia, methane, halogenated hydrocarbons and aromatic molecules []. These enzymes are composed of 3 subunits - A (IPR003393 from INTERPRO), B (IPR006833 from INTERPRO) and C (IPR006980 from INTERPRO) - and contain various metal centres, including copper. Particulate methane monooxygenase from Methylococcus capsulatus str. Bath is an ABC homotrimer, which contains mononuclear and dinuclear copper metal centres, and a third metal centre containing a metal ion whose identity in vivo is not certain[]. The soluble regions of these enzymes derive primarily from the B subunit. This subunit forms two antiparallel beta-barrel-like structures and contains the mono- and di- nuclear copper metal centres [].; PDB: 3CHX_E 3RFR_A 3RGB_A 1YEW_A.
Probab=43.48 E-value=1.3e+02 Score=31.00 Aligned_cols=66 Identities=18% Similarity=0.236 Sum_probs=41.4
Q ss_pred eEEeCCeeEEeccCCCeeEEEEEEEcCCCCeEEEEEeeCCCCcE----------------------EEeCCceeeCCCCe
Q 019733 6 LDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKY----------------------CVRPNVSIIKPKAI 63 (336)
Q Consensus 6 L~I~P~EL~F~~p~~k~~s~~LtLtN~S~~~VAFKVKTTaP~rY----------------------~VrPn~GiI~Pges 63 (336)
+.+.-..-.|.- .++...-+|+++|.++++|...==+|+.-+| .|.| .+-|.||++
T Consensus 249 V~~~v~~A~Y~v-pgR~l~~~l~VtN~g~~pv~LgeF~tA~vrFln~~v~~~~~~~P~~l~A~~gL~vs~-~~pI~PGET 326 (381)
T PF04744_consen 249 VKVKVTDATYRV-PGRTLTMTLTVTNNGDSPVRLGEFNTANVRFLNPDVPTDDPDYPDELLAERGLSVSD-NSPIAPGET 326 (381)
T ss_dssp EEEEEEEEEEES-SSSEEEEEEEEEEESSS-BEEEEEESSS-EEE-TTT-SS-S---TTTEETT-EEES---S-B-TT-E
T ss_pred eEEEEeccEEec-CCcEEEEEEEEEcCCCCceEeeeEEeccEEEeCcccccCCCCCchhhhccCcceeCC-CCCcCCCce
Confidence 444444556665 4678899999999999999887444444433 2333 346899999
Q ss_pred EEEEEEeccC
Q 019733 64 SDFTVTMQAQ 73 (336)
Q Consensus 64 i~I~ITlqa~ 73 (336)
.+|.|+.|.-
T Consensus 327 rtl~V~a~dA 336 (381)
T PF04744_consen 327 RTLTVEAQDA 336 (381)
T ss_dssp EEEEEEEE-H
T ss_pred EEEEEEeehh
Confidence 9999998754
No 72
>PRK15285 putative fimbrial chaperone protein StfD; Provisional
Probab=43.42 E-value=3.1e+02 Score=26.42 Aligned_cols=80 Identities=20% Similarity=0.187 Sum_probs=52.6
Q ss_pred CeeEEeccCCCeeEEEEEEEcCCCC-eEEEEEeeC--CCC----cEEEeCCceeeCCCCeEEEEEEecc-CcCCCCCCCC
Q 019733 11 LELKFTFEVKKQSTCVIQLGNKSDQ-CVAFKVKTT--SPK----KYCVRPNVSIIKPKAISDFTVTMQA-QRVAPPDLQC 82 (336)
Q Consensus 11 ~EL~F~~p~~k~~s~~LtLtN~S~~-~VAFKVKTT--aP~----rY~VrPn~GiI~Pgesi~I~ITlqa-~~~~P~d~k~ 82 (336)
..+.|... ....+++|.|.++. ++.-..... ... -|.|.|+.-.|+||+...+.|...+ ....|.| -
T Consensus 32 TRVIy~~~---~~~~sv~i~N~~~~~p~LvQsWvd~~~~~~~~~pFiVtPPlfRl~p~~~~~lRI~~~~~~~~LP~D--R 106 (250)
T PRK15285 32 TRLVFRGE---DKSISVDLKNANSKLPYLAQSWVEDEKGVKITSPLIVVPPVQRIEPSAIGQVKIQGMPALASLPQD--R 106 (250)
T ss_pred cEEEEcCC---CceEEEEEEeCCCCCcEEEEEEeeCCCCCcccCCEEEcCCeEEECCCCceEEEEEECCCCCCCCCC--c
Confidence 46777652 44689999999865 444333221 111 3999999999999999999999875 2334533 1
Q ss_pred CCeEEEEEEEcCC
Q 019733 83 KDKFLIQGIVVPF 95 (336)
Q Consensus 83 kDKFLVqs~~vp~ 95 (336)
.--|-+....+|+
T Consensus 107 ESlfwlnv~~IPp 119 (250)
T PRK15285 107 ETLFYYNVREIPP 119 (250)
T ss_pred eEEEEEEEEEcCC
Confidence 2345666666665
No 73
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=42.72 E-value=1e+02 Score=27.38 Aligned_cols=47 Identities=23% Similarity=0.278 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHhhhhHHHHHhhhh
Q 019733 266 KLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHE 312 (336)
Q Consensus 266 ~~~~d~~~l~~~l~~~~~kl~ea~~~i~kl~e~~r~~~~e~~~l~~e 312 (336)
++..|-++-|..+..|+.++++.-+-...|..+-.+-..||+.|-++
T Consensus 42 ~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~ 88 (140)
T PF10473_consen 42 CLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKE 88 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444555555444
No 74
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=42.08 E-value=1.1e+02 Score=29.29 Aligned_cols=51 Identities=16% Similarity=0.175 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHhhhhHHHHHhhhhh
Q 019733 263 LELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHEL 313 (336)
Q Consensus 263 ~~~~~~~d~~~l~~~l~~~~~kl~ea~~~i~kl~e~~r~~~~e~~~l~~e~ 313 (336)
+..++..+++.++.|+....+....++..|.+||.+--..+..|..|+.++
T Consensus 76 e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i 126 (312)
T PF00038_consen 76 EIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQI 126 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHH
Confidence 344556666677777777766777778888888877766666666655443
No 75
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=40.82 E-value=1.2e+02 Score=24.24 Aligned_cols=20 Identities=20% Similarity=0.355 Sum_probs=13.2
Q ss_pred EEEEEEEcCCCCeEEEEEee
Q 019733 24 TCVIQLGNKSDQCVAFKVKT 43 (336)
Q Consensus 24 s~~LtLtN~S~~~VAFKVKT 43 (336)
.-.|+|+|.+++.|-+...|
T Consensus 3 ~~~l~v~N~s~~~v~l~f~s 22 (82)
T PF12690_consen 3 EFTLTVTNNSDEPVTLQFPS 22 (82)
T ss_dssp EEEEEEEE-SSS-EEEEESS
T ss_pred EEEEEEEeCCCCeEEEEeCC
Confidence 45778888888888777655
No 76
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=40.76 E-value=77 Score=33.88 Aligned_cols=49 Identities=16% Similarity=0.251 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhhHHHHHH---HHHHHHHHhhhhHHHHHhhh
Q 019733 263 LELKLAKDFEELKLKLNVMDSQLREAEHT---IRKLMEARKLATREKDMLKH 311 (336)
Q Consensus 263 ~~~~~~~d~~~l~~~l~~~~~kl~ea~~~---i~kl~e~~r~~~~e~~~l~~ 311 (336)
..+.+-+|+++||+.+.++.-+.+||+++ |.-|+|.-|+-.+.-.|++-
T Consensus 265 ~~~~i~~~i~~lk~~n~~l~e~i~ea~k~s~~i~~l~ek~r~l~~D~nk~~~ 316 (622)
T COG5185 265 FVHIINTDIANLKTQNDNLYEKIQEAMKISQKIKTLREKWRALKSDSNKYEN 316 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 34567799999999999999999999865 66677777776665555544
No 77
>PRK14148 heat shock protein GrpE; Provisional
Probab=40.25 E-value=80 Score=29.51 Aligned_cols=48 Identities=15% Similarity=0.185 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHH----HhhhhHHHHHhhhh
Q 019733 265 LKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEA----RKLATREKDMLKHE 312 (336)
Q Consensus 265 ~~~~~d~~~l~~~l~~~~~kl~ea~~~i~kl~e~----~r~~~~e~~~l~~e 312 (336)
..+.+++++|+.+|..++.++++.+.....+.-+ ||++.+|++.++.-
T Consensus 36 ~~~~~e~~~l~~~l~~l~~e~~elkd~~lR~~Ae~eN~rKR~~rE~e~~~~~ 87 (195)
T PRK14148 36 LSVEEQLERAKDTIKELEDSCDQFKDEALRAKAEMENIRKRAERDVSNARKF 87 (195)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666666666666666666655555444433 56667888777654
No 78
>PRK10884 SH3 domain-containing protein; Provisional
Probab=40.07 E-value=97 Score=29.04 Aligned_cols=27 Identities=11% Similarity=0.186 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHhhhhh
Q 019733 287 EAEHTIRKLMEARKLATREKDMLKHEL 313 (336)
Q Consensus 287 ea~~~i~kl~e~~r~~~~e~~~l~~e~ 313 (336)
++++.|.+|+++.+.-.+|=..+|+|.
T Consensus 129 ~~~~~~~~L~~~n~~L~~~l~~~~~~~ 155 (206)
T PRK10884 129 QSDSVINGLKEENQKLKNQLIVAQKKV 155 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444333333333333
No 79
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=37.40 E-value=41 Score=31.59 Aligned_cols=23 Identities=22% Similarity=0.343 Sum_probs=19.2
Q ss_pred HHHHHHHhHHHhhHHHHHHHHHH
Q 019733 273 ELKLKLNVMDSQLREAEHTIRKL 295 (336)
Q Consensus 273 ~l~~~l~~~~~kl~ea~~~i~kl 295 (336)
.||-+|+.||.+|..|+.....-
T Consensus 100 rLkrELa~Le~~l~~~~~~~~~~ 122 (195)
T PF12761_consen 100 RLKRELAELEEKLSKVEQAAESR 122 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 48999999999999998877653
No 80
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=37.08 E-value=90 Score=28.67 Aligned_cols=52 Identities=31% Similarity=0.388 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhhHHHHH------HHHHHHHHHhhhhHHHHHhhhhhh
Q 019733 263 LELKLAKDFEELKLKLNVMDSQLREAEH------TIRKLMEARKLATREKDMLKHELM 314 (336)
Q Consensus 263 ~~~~~~~d~~~l~~~l~~~~~kl~ea~~------~i~kl~e~~r~~~~e~~~l~~e~~ 314 (336)
....+.+++++++.++..++.+++++.. -=.+|.++-..--.+...|+.|+.
T Consensus 70 ~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~~eR~~~l~~l~~l~~~~~~l~~el~ 127 (188)
T PF03962_consen 70 KLEKLQKEIEELEKKIEELEEKIEEAKKGREESEEREELLEELEELKKELKELKKELE 127 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567888888888888888888877642 112233333333456777777776
No 81
>PRK14160 heat shock protein GrpE; Provisional
Probab=36.59 E-value=1.3e+02 Score=28.61 Aligned_cols=57 Identities=14% Similarity=0.250 Sum_probs=40.0
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHH----HhhhhHHHHHhhhh
Q 019733 256 LKPAKDILELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEA----RKLATREKDMLKHE 312 (336)
Q Consensus 256 ~~~~~~~~~~~~~~d~~~l~~~l~~~~~kl~ea~~~i~kl~e~----~r~~~~e~~~l~~e 312 (336)
.-+........+.+.++.|+.++..++.++++......++.-+ ||++.+|++.+..-
T Consensus 48 ~~~~~~~~~~~l~~e~~~l~~~l~~l~~e~~elkd~~lR~~AefeN~RKR~~kE~e~~~~~ 108 (211)
T PRK14160 48 SEESNEVKIEELKDENNKLKEENKKLENELEALKDRLLRTVAEYDNYRKRTAKEKEGIYSD 108 (211)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444556677788888888888888888877666666544 67778888877654
No 82
>PF03173 CHB_HEX: Putative carbohydrate binding domain; InterPro: IPR004866 This domain represents the N-terminal domain in chitobiases and beta-hexosaminidases 3.2.1.52 from EC. Chitobiases degrade chitin, which forms the exoskeleton in insects and crustaceans, and which is one of the most abundant polysaccharides on earth []. Beta-hexosaminidases are composed of either a HexA/HexB heterodimer or a HexB homodimer, and can hydrolyse diverse substrates, including GM(2)-gangliosides; mutations in this enzyme are associated with Tay-Sachs disease []. HexB is structurally similar to chitobiase, consisting of a beta sandwich structure; this structure is similar to that found in the cellulose-binding domain of cellulase from Cellulomonas fimi (IPR001919 from INTERPRO), suggesting that it may function as a carbohydrate-binding domain.; GO: 0030246 carbohydrate binding; PDB: 1C7T_A 1QBA_A 1QBB_A 1C7S_A.
Probab=36.32 E-value=41 Score=30.44 Aligned_cols=34 Identities=12% Similarity=0.211 Sum_probs=25.4
Q ss_pred EEEeeCCCCcEEEeCCcee--eCCCCeEEEEEEecc
Q 019733 39 FKVKTTSPKKYCVRPNVSI--IKPKAISDFTVTMQA 72 (336)
Q Consensus 39 FKVKTTaP~rY~VrPn~Gi--I~Pgesi~I~ITlqa 72 (336)
|+|.--+-+.|++.|.-|+ |.||+++.|.+.-..
T Consensus 69 f~i~hinGDl~kl~Pt~~F~gl~~Ges~~I~~~~~~ 104 (164)
T PF03173_consen 69 FKITHINGDLHKLTPTAGFKGLAPGESLEIPFVGEY 104 (164)
T ss_dssp EEEEE-STTEEEEEE-TT---B-TTEEEEEEEEEES
T ss_pred eEEEEEcCeEEEEeECCCCCccCCCCEEEEEEEccc
Confidence 6677777888999999998 899999999988543
No 83
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=36.24 E-value=1.3e+02 Score=29.55 Aligned_cols=15 Identities=27% Similarity=0.166 Sum_probs=7.2
Q ss_pred hhHHHHHhhhhhhhc
Q 019733 302 ATREKDMLKHELMAP 316 (336)
Q Consensus 302 ~~~e~~~l~~e~~~~ 316 (336)
|..|-..||.++..+
T Consensus 274 t~~Ev~~Lk~~~~~L 288 (325)
T PF08317_consen 274 TRSEVKRLKAKVDAL 288 (325)
T ss_pred CHHHHHHHHHHHHHH
Confidence 344445555554443
No 84
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=35.76 E-value=1e+02 Score=23.56 Aligned_cols=35 Identities=14% Similarity=0.289 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHH
Q 019733 265 LKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEAR 299 (336)
Q Consensus 265 ~~~~~d~~~l~~~l~~~~~kl~ea~~~i~kl~e~~ 299 (336)
..+..++..+.+.++++++++++-...|.+|.+-=
T Consensus 3 ~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~env 37 (55)
T PF05377_consen 3 DELENELPRIESSINTVKKENEEISESVEKIEENV 37 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677888888899999998888888888877643
No 85
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=35.04 E-value=1.3e+02 Score=22.54 Aligned_cols=31 Identities=19% Similarity=0.409 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHhHHHhhHHHHHHHHHH
Q 019733 265 LKLAKDFEELKLKLNVMDSQLREAEHTIRKL 295 (336)
Q Consensus 265 ~~~~~d~~~l~~~l~~~~~kl~ea~~~i~kl 295 (336)
.++...++.|+.+++.+..+.++-+..|.+|
T Consensus 20 ~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 20 YQLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555666667777777766666666666666
No 86
>KOG3564 consensus GTPase-activating protein [General function prediction only]
Probab=34.84 E-value=92 Score=33.38 Aligned_cols=40 Identities=18% Similarity=0.316 Sum_probs=32.8
Q ss_pred HHHHhHHHhhHHHHHHHHHHHHHHhhhhHHHHHhhhhhhh
Q 019733 276 LKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELMA 315 (336)
Q Consensus 276 ~~l~~~~~kl~ea~~~i~kl~e~~r~~~~e~~~l~~e~~~ 315 (336)
.|++.+|.||.-|...|.-+.++||..--++++|.+-...
T Consensus 63 tk~~~ldvklkha~~~vda~ik~rr~ae~d~~~~E~~i~~ 102 (604)
T KOG3564|consen 63 TKRSALDVKLKHARNQVDAEIKRRRRAEADCEKLETQIQL 102 (604)
T ss_pred HhhhhccchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 5678888899999999999999999999888887654443
No 87
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=34.19 E-value=1.6e+02 Score=26.14 Aligned_cols=54 Identities=15% Similarity=0.204 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHhhhhHHHHHhhhhhhhcc
Q 019733 264 ELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELMAPA 317 (336)
Q Consensus 264 ~~~~~~d~~~l~~~l~~~~~kl~ea~~~i~kl~e~~r~~~~e~~~l~~e~~~~~ 317 (336)
...+..+.+.|+..|...+..+...+.-+.++..++........+|++.+..+.
T Consensus 86 l~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~~~~~~ 139 (177)
T PF13870_consen 86 LHFLSEELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQQGGLLG 139 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 456678888888888888888888888888888888888888888888876643
No 88
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=33.81 E-value=1.5e+02 Score=22.65 Aligned_cols=26 Identities=19% Similarity=0.312 Sum_probs=11.9
Q ss_pred HHHHHhHHHhhHHHHHHHHHHHHHHh
Q 019733 275 KLKLNVMDSQLREAEHTIRKLMEARK 300 (336)
Q Consensus 275 ~~~l~~~~~kl~ea~~~i~kl~e~~r 300 (336)
+..|...+..|+||+..|..+--|-|
T Consensus 24 ~~~i~~~e~~l~ea~~~l~qMe~E~~ 49 (79)
T PF05008_consen 24 KSLIREIERDLDEAEELLKQMELEVR 49 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444433
No 89
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=33.75 E-value=1.9e+02 Score=24.31 Aligned_cols=50 Identities=16% Similarity=0.278 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHhHHHhh-HHHHHHHHHHHHHHhhhhHHHHHhhhhhh
Q 019733 265 LKLAKDFEELKLKLNVMDSQL-REAEHTIRKLMEARKLATREKDMLKHELM 314 (336)
Q Consensus 265 ~~~~~d~~~l~~~l~~~~~kl-~ea~~~i~kl~e~~r~~~~e~~~l~~e~~ 314 (336)
..+......+.+.|..|-+.| +||-.|+..=|.++-..-...+.|+.++.
T Consensus 11 ~~ae~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~k~~~le~~l~ 61 (100)
T PF06428_consen 11 EEAEQEKEQIESELEELTASLFEEANKMVADARRERAALEEKNEQLEKQLK 61 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677778888888898998 99999998888765554455556666554
No 90
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=33.59 E-value=1.2e+02 Score=23.24 Aligned_cols=54 Identities=20% Similarity=0.246 Sum_probs=38.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHhHHHhhHHHH-HHHHHHHHHHhhhhHHHHHhhhhh
Q 019733 260 KDILELKLAKDFEELKLKLNVMDSQLREAE-HTIRKLMEARKLATREKDMLKHEL 313 (336)
Q Consensus 260 ~~~~~~~~~~d~~~l~~~l~~~~~kl~ea~-~~i~kl~e~~r~~~~e~~~l~~e~ 313 (336)
+.-....+..++++...-|..|+..++.+- ..-..+...-|.--.+-++|++++
T Consensus 23 r~~~i~~~e~~l~ea~~~l~qMe~E~~~~p~s~r~~~~~kl~~yr~~l~~lk~~l 77 (79)
T PF05008_consen 23 RKSLIREIERDLDEAEELLKQMELEVRSLPPSERNQYKSKLRSYRSELKKLKKEL 77 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCTS-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344678888999999999999999888875 333445555555556667777775
No 91
>PF13205 Big_5: Bacterial Ig-like domain
Probab=33.52 E-value=2.2e+02 Score=22.18 Aligned_cols=57 Identities=18% Similarity=0.268 Sum_probs=36.9
Q ss_pred eeEEeccCCC-eeEEEEEEEc--CCCCeEEEEEeeCCCCcEEEeCCceeeCCCCeEEEEEEec
Q 019733 12 ELKFTFEVKK-QSTCVIQLGN--KSDQCVAFKVKTTSPKKYCVRPNVSIIKPKAISDFTVTMQ 71 (336)
Q Consensus 12 EL~F~~p~~k-~~s~~LtLtN--~S~~~VAFKVKTTaP~rY~VrPn~GiI~Pgesi~I~ITlq 71 (336)
.|.|..+.+. .....+.+.+ ....+|.+. ....+.+.+.|. +-|.+|..+.|.|.-.
T Consensus 26 ~i~Fs~~v~~~s~~~~~~~~~~~~~~~~v~~~--~~~~~~~~i~p~-~~L~~~t~Y~v~i~~~ 85 (107)
T PF13205_consen 26 VITFSEPVDPASVSSAITITDSNGSGVPVSFS--SWDGNTLTITPS-QPLKPGTTYTVTIDSG 85 (107)
T ss_pred EEEECCceecCccceEEEEEecCCCcEEEEEE--EccCCEEEEEEC-CcCCCCCEEEEEECCC
Confidence 4777776543 3344555643 444555555 444588899998 6688999999988543
No 92
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=33.50 E-value=2.6e+02 Score=29.20 Aligned_cols=69 Identities=13% Similarity=0.118 Sum_probs=45.5
Q ss_pred eeEEEEEEEcCCCCeEEEEEeeCCCCcEEEe-C-CceeeCCCCeEEEEEEeccCcCCCCCCCCCCeEEEEEEE
Q 019733 22 QSTCVIQLGNKSDQCVAFKVKTTSPKKYCVR-P-NVSIIKPKAISDFTVTMQAQRVAPPDLQCKDKFLIQGIV 92 (336)
Q Consensus 22 ~~s~~LtLtN~S~~~VAFKVKTTaP~rY~Vr-P-n~GiI~Pgesi~I~ITlqa~~~~P~d~k~kDKFLVqs~~ 92 (336)
....+++|.|.+.++..|.++........+. + +.=.|+||+..++.|++........ ..++.|.|....
T Consensus 347 ~N~Y~~~i~Nk~~~~~~~~l~v~g~~~~~~~~~~~~i~v~~g~~~~~~v~v~~~~~~~~--~~~~~i~~~v~~ 417 (434)
T TIGR02745 347 ENTYTLKILNKTEQPHEYYLSVLGLPGIKIEGPGAPIHVKAGEKVKLPVFLRTPPDALK--SGITSIEIRAYA 417 (434)
T ss_pred EEEEEEEEEECCCCCEEEEEEEecCCCcEEEcCCceEEECCCCEEEEEEEEEechhhcc--CCceeEEEEEEE
Confidence 4568999999999988888887764443333 2 2448999999988888765432111 234555554443
No 93
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=33.50 E-value=90 Score=29.80 Aligned_cols=36 Identities=33% Similarity=0.464 Sum_probs=29.1
Q ss_pred HhHHHhhHHHHHHHHHHHHHHhhhhHHHHHhhhhhh
Q 019733 279 NVMDSQLREAEHTIRKLMEARKLATREKDMLKHELM 314 (336)
Q Consensus 279 ~~~~~kl~ea~~~i~kl~e~~r~~~~e~~~l~~e~~ 314 (336)
..|+.++.+++..|.+|.+++.....|...||+++.
T Consensus 78 ~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~ 113 (246)
T PF00769_consen 78 EQLEQELREAEAEIARLEEESERKEEEAEELQEELE 113 (246)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 458889999999999999999988999888888754
No 94
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=33.26 E-value=1.4e+02 Score=31.34 Aligned_cols=51 Identities=18% Similarity=0.257 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhhHHHHH-------HHHHHHHHHhhhhHHHHHhhhhh
Q 019733 263 LELKLAKDFEELKLKLNVMDSQLREAEH-------TIRKLMEARKLATREKDMLKHEL 313 (336)
Q Consensus 263 ~~~~~~~d~~~l~~~l~~~~~kl~ea~~-------~i~kl~e~~r~~~~e~~~l~~e~ 313 (336)
++.++..|+.-++..|...+-.++++|. -..|-|+|+..--+|++.+++++
T Consensus 75 qlddi~~qlr~~rtel~~a~~~k~~~e~er~~~~~El~~~r~e~~~v~~~~~~a~~n~ 132 (499)
T COG4372 75 QLDDIRPQLRALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQNL 132 (499)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677889999999999999999999888 56666666666666666555554
No 95
>smart00637 CBD_II CBD_II domain.
Probab=32.72 E-value=2e+02 Score=22.59 Aligned_cols=48 Identities=17% Similarity=0.172 Sum_probs=30.9
Q ss_pred eEEEEEEEcCCCCe-----EEEEEee-------------CCCCcEEEeCC--ceeeCCCCeEEEEEEe
Q 019733 23 STCVIQLGNKSDQC-----VAFKVKT-------------TSPKKYCVRPN--VSIIKPKAISDFTVTM 70 (336)
Q Consensus 23 ~s~~LtLtN~S~~~-----VAFKVKT-------------TaP~rY~VrPn--~GiI~Pgesi~I~ITl 70 (336)
....|+|+|.++.+ |.|.+-. .....|.++|. .+.|.||+++.|-+..
T Consensus 8 ~~~~v~vtN~~~~~~~~W~v~~~~~~~~~i~~~Wn~~~~~~g~~~~~~~~~wn~~i~~G~s~~~gf~~ 75 (92)
T smart00637 8 FTANVTVTNTGSSAINGWTVTFDLPGGQTVTNSWNATVSQSGGHVTATNASWNGTIAPGGSVSFGFQG 75 (92)
T ss_pred EEEEEEEEeCCCCcccCeEEEEEcCCCcEEeeeEEEEEEecCCEEEEecCccccccCCCCEEEEEEEe
Confidence 34678888876643 2343311 12336999864 4899999998876665
No 96
>PF10874 DUF2746: Protein of unknown function (DUF2746); InterPro: IPR022704 The proteins in this entry are uncharacterised.
Probab=32.23 E-value=1.3e+02 Score=23.05 Aligned_cols=40 Identities=25% Similarity=0.440 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHhhhhHHH
Q 019733 264 ELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREK 306 (336)
Q Consensus 264 ~~~~~~d~~~l~~~l~~~~~kl~ea~~~i~kl~e~~r~~~~e~ 306 (336)
-.++..|+.+|. ..+..-+.+...-|-.|||+=|+--+||
T Consensus 10 ~tnmRDDiD~l~---~~v~~~~~~~~rDigglReelrtER~ER 49 (57)
T PF10874_consen 10 DTNMRDDIDELR---DRVREGFREMRRDIGGLREELRTERRER 49 (57)
T ss_pred CcchHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356889999998 4445566777789999999999877777
No 97
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=31.18 E-value=1.9e+02 Score=31.32 Aligned_cols=58 Identities=16% Similarity=0.298 Sum_probs=42.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHhhhhHHHHHhhhhhhhc
Q 019733 259 AKDILELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELMAP 316 (336)
Q Consensus 259 ~~~~~~~~~~~d~~~l~~~l~~~~~kl~ea~~~i~kl~e~~r~~~~e~~~l~~e~~~~ 316 (336)
.+--...+|.+.+++|++.+..++..++.-...+.++.++....-.+...|++|+.+.
T Consensus 325 ~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~ 382 (594)
T PF05667_consen 325 EQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLK 382 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334556677777777777777777777777777888888777777788888877654
No 98
>PRK14161 heat shock protein GrpE; Provisional
Probab=31.13 E-value=2.1e+02 Score=26.36 Aligned_cols=47 Identities=13% Similarity=0.189 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHH----HhhhhHHHHHhhhh
Q 019733 266 KLAKDFEELKLKLNVMDSQLREAEHTIRKLMEA----RKLATREKDMLKHE 312 (336)
Q Consensus 266 ~~~~d~~~l~~~l~~~~~kl~ea~~~i~kl~e~----~r~~~~e~~~l~~e 312 (336)
-+.+|++-+..+|..++.++++.+....++.-+ ||++.+|++..+.-
T Consensus 16 ~~~~~~~~~~~ei~~l~~e~~elkd~~lR~~AefeN~rkR~~ke~~~~~~~ 66 (178)
T PRK14161 16 IAEEIVETANPEITALKAEIEELKDKLIRTTAEIDNTRKRLEKARDEAKDY 66 (178)
T ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355677777777777777777666555555443 56667777776553
No 99
>KOG2176 consensus Exocyst complex, subunit SEC15 [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.12 E-value=1e+02 Score=34.56 Aligned_cols=45 Identities=22% Similarity=0.262 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhhHHHH-HHHHHHHHHHhhhhHHHH
Q 019733 263 LELKLAKDFEELKLKLNVMDSQLREAE-HTIRKLMEARKLATREKD 307 (336)
Q Consensus 263 ~~~~~~~d~~~l~~~l~~~~~kl~ea~-~~i~kl~e~~r~~~~e~~ 307 (336)
++++|..|.|.||+.++-...+|+++. ..|.++.+=-|..+++|.
T Consensus 81 EL~~Vr~daq~Lks~vsd~N~rLQ~~g~eLiv~~e~lv~~r~~~rn 126 (800)
T KOG2176|consen 81 ELLKVRGDAQKLKSQVSDTNRRLQESGKELIVKKEDLVRCRTQSRN 126 (800)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 568899999999999999999999854 567788877888888885
No 100
>PF05761 5_nucleotid: 5' nucleotidase family; InterPro: IPR008380 This family includes a 5'-nucleotidase, 3.1.3.5 from EC, specific for purines (IMP and GMP) []. These enzymes are members of the Haloacid Dehalogenase (HAD) superfamily. HAD members are recognised by three short motifs {hhhhDxDx(T/V)}, {hhhh(T/S)}, and either {hhhh(D/E)(D/E)x(3-4)(G/N)} or {hhhh(G/N)(D/E)x(3-4)(D/E)} (where "h" stands for a hydrophobic residue). Crystal structures of many HAD enzymes has verified PSI-PRED predictions of secondary structural elements which show each of the "hhhh" sequences of the motifs as part of beta sheets. This subfamily of enzymes is part of "Subfamily I" of the HAD superfamily by virtue of a "cap" domain in between motifs 1 and 2. This subfamily's cap domain has a different predicted secondary structure than all other known HAD enzymes and thus has been designated "subfamily IG", the domain appears to consist of a mixed alpha/beta fold.; PDB: 2BDE_A 2XCW_A 2XCX_A 2XCV_A 2XJB_A 2JCM_A 2XJE_A 2J2C_A 2XJF_A 2XJD_A ....
Probab=31.07 E-value=1.4e+02 Score=31.23 Aligned_cols=57 Identities=23% Similarity=0.214 Sum_probs=33.3
Q ss_pred HHHHHHHhHHHhhHHHHHH------HHHHHHHHhhhhHHHHHhhhhhhhcccccccCCcccccCC
Q 019733 273 ELKLKLNVMDSQLREAEHT------IRKLMEARKLATREKDMLKHELMAPAITTLPFGSRTRTGG 331 (336)
Q Consensus 273 ~l~~~l~~~~~kl~ea~~~------i~kl~e~~r~~~~e~~~l~~e~~~~~~~~~~~~~~~~~~~ 331 (336)
.+..+|..|+..+++.+.. ..+++...+.-.+||+.|.++|... .--.|||--|||.
T Consensus 339 ~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--fn~~~GslfRtg~ 401 (448)
T PF05761_consen 339 YRFEELQELEELLEELQDHLDQLRSSSELRPDISELRKERRELRREMKEL--FNPQFGSLFRTGH 401 (448)
T ss_dssp HHHHHHHHHHHHCHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT--T-TTT-BSSEETT
T ss_pred hhhhHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHhhh--cccchHHHHhcCC
Confidence 3333455555555444444 3456656666667777788887643 2346899999975
No 101
>PF06148 COG2: COG (conserved oligomeric Golgi) complex component, COG2; InterPro: IPR024602 This entry represents the uncharacterised N-terminal domain of subunit 2 of the COG complex. The COG complex comprises eight proteins COG1-8 and plays critical roles in Golgi structure and function [].; PDB: 2JQQ_A.
Probab=31.02 E-value=83 Score=26.76 Aligned_cols=64 Identities=22% Similarity=0.238 Sum_probs=38.4
Q ss_pred cccccc-CCCchhHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHhhhhHHHHHhhhhhh
Q 019733 250 AEDASE-LKPAKDILELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELM 314 (336)
Q Consensus 250 ~~~~~~-~~~~~~~~~~~~~~d~~~l~~~l~~~~~kl~ea~~~i~kl~e~~r~~~~e~~~l~~e~~ 314 (336)
.+.++. +++.++ ....+..++..++.++..+..++..+...|...-++++.-..+|..|+.-+.
T Consensus 57 Fv~Ls~~L~g~~~-~i~~l~~~L~~~~~~v~~~~~~l~~~~~~i~~~l~~~~~l~~~k~~l~~~l~ 121 (133)
T PF06148_consen 57 FVSLSTNLVGMDE-KIEELRKPLSQFREEVESVRDELDNTQEEIEDKLEERKELREEKALLKLLLD 121 (133)
T ss_dssp ------------------HHHHHHHHHHHHHHHHHS-STTHHHHHHHHHHHHHHHHHHHT-SSSSH
T ss_pred HHHHHHHHccHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555 444433 3567888999999999999999999999999888888887777777665443
No 102
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=30.89 E-value=1.6e+02 Score=28.50 Aligned_cols=51 Identities=29% Similarity=0.419 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHhHHHhhHHHHH----HHHHHHHHHhhhhHHHHHhhhhhh
Q 019733 264 ELKLAKDFEELKLKLNVMDSQLREAEH----TIRKLMEARKLATREKDMLKHELM 314 (336)
Q Consensus 264 ~~~~~~d~~~l~~~l~~~~~kl~ea~~----~i~kl~e~~r~~~~e~~~l~~e~~ 314 (336)
..++.+.+..|+.++-.++..+.+++. .+.+++++...--++|+.|+.+|-
T Consensus 119 ~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e~~~~~~~~~~~L~~~l~ 173 (239)
T COG1579 119 IEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIREEGQELSSKREELKEKLD 173 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 345666666677777777766666544 456777777777888888888774
No 103
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=30.74 E-value=2.1e+02 Score=25.48 Aligned_cols=49 Identities=20% Similarity=0.186 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHhhhhHHHHHhhhhhhh
Q 019733 267 LAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELMA 315 (336)
Q Consensus 267 ~~~d~~~l~~~l~~~~~kl~ea~~~i~kl~e~~r~~~~e~~~l~~e~~~ 315 (336)
|..|++.....+..+....+-+...|..|.++-..-+.++.-|..||+.
T Consensus 29 LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~ 77 (140)
T PF10473_consen 29 LERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDT 77 (140)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444555666666666666666666666666653
No 104
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=30.70 E-value=1.4e+02 Score=24.66 Aligned_cols=42 Identities=17% Similarity=0.244 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHH-HhhhhH
Q 019733 263 LELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEA-RKLATR 304 (336)
Q Consensus 263 ~~~~~~~d~~~l~~~l~~~~~kl~ea~~~i~kl~e~-~r~~~~ 304 (336)
+..+|..||+.|++|.+.+.+....|...+..-.+| .|.+.|
T Consensus 25 kvdqLss~V~~L~~kvdql~~dv~~a~aaa~aAk~EA~RAN~R 67 (85)
T PRK09973 25 KVNQLASNVQTLNAKIARLEQDMKALRPQIYAAKSEANRANTR 67 (85)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 457889999999999999999999998888766544 455433
No 105
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=30.56 E-value=1.4e+02 Score=26.51 Aligned_cols=39 Identities=21% Similarity=0.306 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHhh
Q 019733 263 LELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKL 301 (336)
Q Consensus 263 ~~~~~~~d~~~l~~~l~~~~~kl~ea~~~i~kl~e~~r~ 301 (336)
++..+.+|+++|+..|..++.+-.+|...|..+++--|-
T Consensus 30 ~~~~v~~~i~~L~~~L~~~~n~t~~~~~~v~~i~~~~~~ 68 (146)
T PF08702_consen 30 YERDVDKDIQELENLLDQISNSTSEAFEYVKNIKDSLRP 68 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc
Confidence 678899999999999999999999999999888776443
No 106
>PF00553 CBM_2: Cellulose binding domain; InterPro: IPR001919 The microbial degradation of cellulose and xylans requires several types of enzyme such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) []. Structurally, cellulases and xylanases generally consist of a catalytic domain joined to a cellulose-binding domain (CBD) by a short linker sequence rich in proline and/or hydroxy-amino acids. The CBD domain is found either at the N-terminal or at the C-terminal extremity of these enzymes. As it is shown in the following schematic representation, there are two conserved cysteines in this CBD domain - one at each extremity of the domain - which have been shown [] to be involved in a disulphide bond. There are also four conserved tryptophan, two are involved in cellulose binding. The CBD of a number of bacterial cellulases has been shown to consist of about 105 amino acid residues [, ]. +-------------------------------------------------+ | | xCxxxxWxxxxxNxxxWxxxxxxxWxxxxxxxxWNxxxxxGxxxxxxxxxxCx 'C': conserved cysteine involved in a disulphide bond. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process; PDB: 2CZN_A 2CWR_A 1HEH_C 1HEJ_C 3NDZ_E 3NDY_E 2XBD_A 1E5C_A 1XBD_A 1E5B_A ....
Probab=30.45 E-value=1.5e+02 Score=23.99 Aligned_cols=52 Identities=15% Similarity=0.142 Sum_probs=34.5
Q ss_pred eeEEEEEEEcCCCCeEE-EEEeeC-----------------CCCcEEEeCC--ceeeCCCCeEEEEEEeccC
Q 019733 22 QSTCVIQLGNKSDQCVA-FKVKTT-----------------SPKKYCVRPN--VSIIKPKAISDFTVTMQAQ 73 (336)
Q Consensus 22 ~~s~~LtLtN~S~~~VA-FKVKTT-----------------aP~rY~VrPn--~GiI~Pgesi~I~ITlqa~ 73 (336)
.....|+|+|.++..|. ++|.=+ +-..|.|+|. .+.|.||+++.|-+.....
T Consensus 14 Gf~~~v~v~N~~~~~i~~W~v~~~~~~~~~i~~~Wna~~s~~g~~~~v~~~~wn~~i~~G~s~~~Gf~~~~~ 85 (101)
T PF00553_consen 14 GFQGEVTVTNNGSSPINGWTVTFTFPSGQTITSSWNATVSQSGNTVTVTNPSWNGTIAPGGSVTFGFQASGS 85 (101)
T ss_dssp EEEEEEEEEESSSSTEESEEEEEEESTTEEEEEEESCEEEEETTEEEEEESSTCSEEEESEEEEEEEEEEES
T ss_pred CeEEEEEEEECCCCccCCEEEEEEeCCCCEEeeeeccEEEecCCEEEEEcCCcCcccCCCCeEEEEEEEeCC
Confidence 34567888998876642 332211 2356888876 4799999998887766543
No 107
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=30.37 E-value=2.2e+02 Score=22.77 Aligned_cols=52 Identities=12% Similarity=0.193 Sum_probs=32.8
Q ss_pred EEeCCeeEEeccCCCeeEEEEEEEcCCCCeEEEEEeeCCCCcEEEeCCceeeCCCCeEEEEEEe
Q 019733 7 DIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKAISDFTVTM 70 (336)
Q Consensus 7 ~I~P~EL~F~~p~~k~~s~~LtLtN~S~~~VAFKVKTTaP~rY~VrPn~GiI~Pgesi~I~ITl 70 (336)
.++|.++..... ....|+++|..+....|.+.. +. -...|.||++..+.++-
T Consensus 31 ~f~P~~i~v~~G----~~v~l~~~N~~~~~h~~~i~~-----~~---~~~~l~~g~~~~~~f~~ 82 (104)
T PF13473_consen 31 GFSPSTITVKAG----QPVTLTFTNNDSRPHEFVIPD-----LG---ISKVLPPGETATVTFTP 82 (104)
T ss_dssp EEES-EEEEETT----CEEEEEEEE-SSS-EEEEEGG-----GT---EEEEE-TT-EEEEEEEE
T ss_pred eEecCEEEEcCC----CeEEEEEEECCCCcEEEEECC-----Cc---eEEEECCCCEEEEEEcC
Confidence 567777777542 235699999988888888776 11 12679999999998853
No 108
>PF15456 Uds1: Up-regulated During Septation
Probab=30.32 E-value=2.3e+02 Score=24.67 Aligned_cols=32 Identities=31% Similarity=0.508 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhhHHHHHHHHHH
Q 019733 263 LELKLAKDFEELKLKLNVMDSQLREAEHTIRKL 295 (336)
Q Consensus 263 ~~~~~~~d~~~l~~~l~~~~~kl~ea~~~i~kl 295 (336)
+...|..=++.|+.||+ ++.|+++|-..+.+|
T Consensus 30 El~~L~~R~~~lr~kl~-le~k~RdAa~sl~~l 61 (124)
T PF15456_consen 30 ELRSLDSRLEYLRRKLA-LESKIRDAAHSLSRL 61 (124)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHh
Confidence 44556777788888888 888888888888888
No 109
>PHA02414 hypothetical protein
Probab=30.18 E-value=77 Score=27.05 Aligned_cols=19 Identities=16% Similarity=0.501 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHhHHHhhHH
Q 019733 269 KDFEELKLKLNVMDSQLRE 287 (336)
Q Consensus 269 ~d~~~l~~~l~~~~~kl~e 287 (336)
+.|++|-+++.++++|+++
T Consensus 4 ~~in~Lv~~v~~ledKiQ~ 22 (111)
T PHA02414 4 KEINNLVSQVETLEDKIQE 22 (111)
T ss_pred hHHHHHHHHHHHHHHHHhc
Confidence 4566777777777777665
No 110
>PRK14145 heat shock protein GrpE; Provisional
Probab=30.16 E-value=1.2e+02 Score=28.39 Aligned_cols=46 Identities=26% Similarity=0.305 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHH----HhhhhHHHHHhhhh
Q 019733 267 LAKDFEELKLKLNVMDSQLREAEHTIRKLMEA----RKLATREKDMLKHE 312 (336)
Q Consensus 267 ~~~d~~~l~~~l~~~~~kl~ea~~~i~kl~e~----~r~~~~e~~~l~~e 312 (336)
...+++.|+.+|..++.++.+......++.-+ ||++.+||+.++.-
T Consensus 43 ~~~e~~~l~~~l~~le~e~~el~d~~lR~~AEfeN~rkR~~kE~e~~~~~ 92 (196)
T PRK14145 43 TVDEIEELKQKLQQKEVEAQEYLDIAQRLKAEFENYRKRTEKEKSEMVEY 92 (196)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556667777777777777665555555433 66678888877654
No 111
>PRK14163 heat shock protein GrpE; Provisional
Probab=30.05 E-value=1.3e+02 Score=28.58 Aligned_cols=42 Identities=19% Similarity=0.305 Sum_probs=24.5
Q ss_pred HHHHHHHHHhHHHhhHHHHHHHHHHHHH----HhhhhHHHHHhhhh
Q 019733 271 FEELKLKLNVMDSQLREAEHTIRKLMEA----RKLATREKDMLKHE 312 (336)
Q Consensus 271 ~~~l~~~l~~~~~kl~ea~~~i~kl~e~----~r~~~~e~~~l~~e 312 (336)
.+.|+.+|..++.++++....+.+|.-+ ||++.+||+.+++-
T Consensus 42 ~~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~rkR~~kE~e~~~~~ 87 (214)
T PRK14163 42 TAGLTAQLDQVRTALGERTADLQRLQAEYQNYRRRVERDRVTVKEI 87 (214)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555665555555444444433 56668888877654
No 112
>PRK01026 tetrahydromethanopterin S-methyltransferase subunit G; Provisional
Probab=29.78 E-value=90 Score=25.37 Aligned_cols=27 Identities=22% Similarity=0.461 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHhHHHhhHHHHHHHHH
Q 019733 268 AKDFEELKLKLNVMDSQLREAEHTIRK 294 (336)
Q Consensus 268 ~~d~~~l~~~l~~~~~kl~ea~~~i~k 294 (336)
.+|+.+++.||+.+|.|.+-+-.-|.+
T Consensus 14 ~~d~~~i~~rLD~iEeKVEftn~Ei~Q 40 (77)
T PRK01026 14 PKDFKEIQKRLDEIEEKVEFTNAEIFQ 40 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 489999999999999999987665543
No 113
>PRK14158 heat shock protein GrpE; Provisional
Probab=29.78 E-value=1.6e+02 Score=27.58 Aligned_cols=44 Identities=18% Similarity=0.145 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHhHHHhhHHHHHHHHHHHH----HHhhhhHHHHHhhhh
Q 019733 269 KDFEELKLKLNVMDSQLREAEHTIRKLME----ARKLATREKDMLKHE 312 (336)
Q Consensus 269 ~d~~~l~~~l~~~~~kl~ea~~~i~kl~e----~~r~~~~e~~~l~~e 312 (336)
.++++|+.+|..++.++++.+....++.- -||++.+|++.+++-
T Consensus 40 ~~~~~le~~l~~le~e~~el~d~~lR~~AefeN~RkR~~kE~e~~~~~ 87 (194)
T PRK14158 40 DRIKELEEALAAKEAEAAANWDKYLRERADLENYRKRVQKEKEELLKY 87 (194)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555544444333 256667888777653
No 114
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=29.21 E-value=1.3e+02 Score=21.81 Aligned_cols=17 Identities=24% Similarity=0.606 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHhHHH
Q 019733 267 LAKDFEELKLKLNVMDS 283 (336)
Q Consensus 267 ~~~d~~~l~~~l~~~~~ 283 (336)
+.+|.+-||+.-+.|.+
T Consensus 3 lE~Dy~~LK~~yd~Lk~ 19 (45)
T PF02183_consen 3 LERDYDALKASYDSLKA 19 (45)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 45666666666555544
No 115
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=28.99 E-value=2.9e+02 Score=22.58 Aligned_cols=50 Identities=20% Similarity=0.200 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHhhhhHHHHHhhhhhhhc
Q 019733 267 LAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELMAP 316 (336)
Q Consensus 267 ~~~d~~~l~~~l~~~~~kl~ea~~~i~kl~e~~r~~~~e~~~l~~e~~~~ 316 (336)
+...+..++.++.+|+.+..-...-|.|=..+-...-|.+|.|..||..+
T Consensus 15 ~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L 64 (96)
T PF08647_consen 15 LSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKL 64 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 34455556666666666666666666666666677777778888887655
No 116
>PRK14143 heat shock protein GrpE; Provisional
Probab=28.51 E-value=1.6e+02 Score=28.34 Aligned_cols=44 Identities=23% Similarity=0.400 Sum_probs=21.8
Q ss_pred HHHHHHHHHHhHHHhhHHHHHHHHHHHH----HHhhhhHHHHHhhhhh
Q 019733 270 DFEELKLKLNVMDSQLREAEHTIRKLME----ARKLATREKDMLKHEL 313 (336)
Q Consensus 270 d~~~l~~~l~~~~~kl~ea~~~i~kl~e----~~r~~~~e~~~l~~e~ 313 (336)
.++.|+.+|..++.++++......+|.- -||++.+|++.++.-.
T Consensus 68 ~~~~l~~el~~l~~e~~elkd~~lR~~AdfeN~RKR~~kE~e~~~~~a 115 (238)
T PRK14143 68 RLAQLEQELESLKQELEELNSQYMRIAADFDNFRKRTSREQEDLRLQL 115 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444433333332 2555677777766543
No 117
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=27.96 E-value=1.9e+02 Score=28.73 Aligned_cols=50 Identities=24% Similarity=0.286 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHhhhhHHHHHhhhhhh
Q 019733 265 LKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELM 314 (336)
Q Consensus 265 ~~~~~d~~~l~~~l~~~~~kl~ea~~~i~kl~e~~r~~~~e~~~l~~e~~ 314 (336)
-.|.+.+++|.-.|+.+.-+++|--+..-.+++.......|++.|+.+|.
T Consensus 115 d~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~ 164 (302)
T PF09738_consen 115 DLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQLK 164 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555555555555566666666666777777777775
No 118
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=27.89 E-value=1.1e+02 Score=30.66 Aligned_cols=41 Identities=32% Similarity=0.467 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHhHHH--------------hhHHHHHHHHHHHH---HHhhhhHHHHH
Q 019733 268 AKDFEELKLKLNVMDS--------------QLREAEHTIRKLME---ARKLATREKDM 308 (336)
Q Consensus 268 ~~d~~~l~~~l~~~~~--------------kl~ea~~~i~kl~e---~~r~~~~e~~~ 308 (336)
.-.|++||+.|.-|.. -|.||.+-|.+|++ --|.+.-||||
T Consensus 88 etEI~eLksQL~RMrEDWIEEECHRVEAQLALKEARkEIkQLkQvieTmrssL~ekDk 145 (305)
T PF15290_consen 88 ETEIDELKSQLARMREDWIEEECHRVEAQLALKEARKEIKQLKQVIETMRSSLAEKDK 145 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhh
Confidence 3578889998888753 36788888888885 34666667754
No 119
>TIGR01149 mtrG N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit G. coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=27.63 E-value=1.1e+02 Score=24.55 Aligned_cols=26 Identities=12% Similarity=0.354 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHhHHHhhHHHHHHHH
Q 019733 268 AKDFEELKLKLNVMDSQLREAEHTIR 293 (336)
Q Consensus 268 ~~d~~~l~~~l~~~~~kl~ea~~~i~ 293 (336)
.+|+.+++.||+.+|.|.+-.-.-|.
T Consensus 11 ~~d~~~i~~rLd~iEeKVEf~~~E~~ 36 (70)
T TIGR01149 11 PDEFNEVMKRLDEIEEKVEFVNGEVA 36 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 38999999999999999987655444
No 120
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=27.53 E-value=1.7e+02 Score=29.02 Aligned_cols=31 Identities=26% Similarity=0.407 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHhHHHhhHHHHHHHHHHHH
Q 019733 267 LAKDFEELKLKLNVMDSQLREAEHTIRKLME 297 (336)
Q Consensus 267 ~~~d~~~l~~~l~~~~~kl~ea~~~i~kl~e 297 (336)
+.++-++|..+|..|+...++.+..|.+|.+
T Consensus 55 le~Ee~~l~~eL~~LE~e~~~l~~el~~le~ 85 (314)
T PF04111_consen 55 LEQEEEELLQELEELEKEREELDQELEELEE 85 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444333
No 121
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=27.31 E-value=2e+02 Score=31.61 Aligned_cols=54 Identities=20% Similarity=0.351 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhhHH-----------------HHHHHHHHHHHHhhhhHHHHHhhhhhhhc
Q 019733 263 LELKLAKDFEELKLKLNVMDSQLRE-----------------AEHTIRKLMEARKLATREKDMLKHELMAP 316 (336)
Q Consensus 263 ~~~~~~~d~~~l~~~l~~~~~kl~e-----------------a~~~i~kl~e~~r~~~~e~~~l~~e~~~~ 316 (336)
.+.+|..-+++||.++..|+++|++ -+..|-+|+-+=+..-.+.+.|+.++.-+
T Consensus 437 e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l 507 (652)
T COG2433 437 ENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLAEL 507 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 122
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=27.27 E-value=1.3e+02 Score=26.02 Aligned_cols=40 Identities=23% Similarity=0.307 Sum_probs=26.7
Q ss_pred HHHHHHHHHHhHHHhhHHHHHHHHHHHHHHhhhhHHHHHhhhhhhhc
Q 019733 270 DFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELMAP 316 (336)
Q Consensus 270 d~~~l~~~l~~~~~kl~ea~~~i~kl~e~~r~~~~e~~~l~~e~~~~ 316 (336)
=++.|.+.|..+|. -+.-|+++-..-.++||.|-+|++-+
T Consensus 17 ~ve~L~s~lr~~E~-------E~~~l~~el~~l~~~r~~l~~Eiv~l 56 (120)
T PF12325_consen 17 LVERLQSQLRRLEG-------ELASLQEELARLEAERDELREEIVKL 56 (120)
T ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777777766 45555555555577788888887754
No 123
>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins. The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=27.14 E-value=2.9e+02 Score=25.28 Aligned_cols=54 Identities=17% Similarity=0.235 Sum_probs=40.0
Q ss_pred CCCeeEEEEEEEcCCCCeEEEEEeeCC----CCcEEEeC-----CceeeCCCCeEEEEEEeccC
Q 019733 19 VKKQSTCVIQLGNKSDQCVAFKVKTTS----PKKYCVRP-----NVSIIKPKAISDFTVTMQAQ 73 (336)
Q Consensus 19 ~~k~~s~~LtLtN~S~~~VAFKVKTTa----P~rY~VrP-----n~GiI~Pgesi~I~ITlqa~ 73 (336)
.++.....++|+|..+. -||.|+=++ ++.|.+.- ....|.||+.+.-.+++.+.
T Consensus 36 ~g~~v~V~~~iyN~G~~-~A~dV~l~D~~fp~~~F~lvsG~~s~~~~~i~pg~~vsh~~vv~p~ 98 (181)
T PF05753_consen 36 EGEDVTVTYTIYNVGSS-AAYDVKLTDDSFPPEDFELVSGSLSASWERIPPGENVSHSYVVRPK 98 (181)
T ss_pred CCcEEEEEEEEEECCCC-eEEEEEEECCCCCccccEeccCceEEEEEEECCCCeEEEEEEEeee
Confidence 35678899999999776 789998777 24555432 24678888888888887764
No 124
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=27.12 E-value=2e+02 Score=31.06 Aligned_cols=36 Identities=19% Similarity=0.458 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHh
Q 019733 265 LKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARK 300 (336)
Q Consensus 265 ~~~~~d~~~l~~~l~~~~~kl~ea~~~i~kl~e~~r 300 (336)
..|.+.++.|+.++..|+..|+.++....+|.++..
T Consensus 160 ~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~k 195 (546)
T PF07888_consen 160 EQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQK 195 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566677777777777777776666666655443
No 125
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=26.91 E-value=1.9e+02 Score=31.51 Aligned_cols=49 Identities=18% Similarity=0.247 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHhhhhHHHHHhhhhh
Q 019733 265 LKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHEL 313 (336)
Q Consensus 265 ~~~~~d~~~l~~~l~~~~~kl~ea~~~i~kl~e~~r~~~~e~~~l~~e~ 313 (336)
..|.+|+.-.++=+++|++|-+.-++.+.+|.+|--.-.-|+.+||+|-
T Consensus 269 ~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~ 317 (581)
T KOG0995|consen 269 ARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKEN 317 (581)
T ss_pred HHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4467788777777777777777777777777776666666666666553
No 126
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=26.60 E-value=2.7e+02 Score=23.98 Aligned_cols=38 Identities=24% Similarity=0.313 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHhh
Q 019733 264 ELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKL 301 (336)
Q Consensus 264 ~~~~~~d~~~l~~~l~~~~~kl~ea~~~i~kl~e~~r~ 301 (336)
...+..|++.|+..+..|+.++.+++..+.-+.++-|.
T Consensus 61 ~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~ 98 (151)
T PF11559_consen 61 LRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQ 98 (151)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666666666666655544444333
No 127
>COG5613 Uncharacterized conserved protein [Function unknown]
Probab=26.19 E-value=1.7e+02 Score=30.24 Aligned_cols=47 Identities=19% Similarity=0.181 Sum_probs=34.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHhhhhHHHHHhhhhhhhc
Q 019733 260 KDILELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELMAP 316 (336)
Q Consensus 260 ~~~~~~~~~~d~~~l~~~l~~~~~kl~ea~~~i~kl~e~~r~~~~e~~~l~~e~~~~ 316 (336)
.+-...|+..|+|.++..+.+|+. .|.+|.|+-+. |-+++|++|.-.
T Consensus 328 ~nae~a~~qad~q~~~ad~~~Lq~-------iierlkeelk~---e~e~~qe~me~i 374 (400)
T COG5613 328 LNAEAAQLQADSQLAAADVQNLQR-------IIERLKEELKL---ELEKAQEEMENI 374 (400)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH---HHHHHHHHHHHH
Confidence 334455666777777777777776 88889888754 778899998754
No 128
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=26.18 E-value=1.8e+02 Score=31.28 Aligned_cols=51 Identities=16% Similarity=0.248 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHhhhhHHHHHhhhhhhh
Q 019733 265 LKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELMA 315 (336)
Q Consensus 265 ~~~~~d~~~l~~~l~~~~~kl~ea~~~i~kl~e~~r~~~~e~~~l~~e~~~ 315 (336)
..+.+++++|..++..++.++++++..+..|..+.....++++.|++++.-
T Consensus 205 ~~~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~~ 255 (650)
T TIGR03185 205 SSILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRS 255 (650)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677888888888888888888888888877777777777777666544
No 129
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=26.11 E-value=1.5e+02 Score=30.99 Aligned_cols=30 Identities=20% Similarity=0.325 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHhHHHhhHHHHHHHHHHHHH
Q 019733 269 KDFEELKLKLNVMDSQLREAEHTIRKLMEA 298 (336)
Q Consensus 269 ~d~~~l~~~l~~~~~kl~ea~~~i~kl~e~ 298 (336)
+.+.+|...+..++.++++++..|.+|+.+
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 167 (525)
T TIGR02231 138 SEIERLLTEDREAERRIRELEKQLSELQNE 167 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444333
No 130
>PF04210 MtrG: Tetrahydromethanopterin S-methyltransferase, subunit G ; InterPro: IPR005866 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=25.96 E-value=1.1e+02 Score=24.38 Aligned_cols=27 Identities=19% Similarity=0.421 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHhHHHhhHHHHHHHHH
Q 019733 268 AKDFEELKLKLNVMDSQLREAEHTIRK 294 (336)
Q Consensus 268 ~~d~~~l~~~l~~~~~kl~ea~~~i~k 294 (336)
.+|+.++..||+.+|.|++-+..-|.+
T Consensus 11 ~~~~~~i~~rLd~iEeKvEf~~~Ei~Q 37 (70)
T PF04210_consen 11 PDDFNEIMKRLDEIEEKVEFTNAEIAQ 37 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 489999999999999999987766643
No 131
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=25.96 E-value=1.5e+02 Score=28.35 Aligned_cols=35 Identities=29% Similarity=0.444 Sum_probs=12.5
Q ss_pred hHHHhhHHHHHHHHHHHHHHhhhhHHHHHhhhhhh
Q 019733 280 VMDSQLREAEHTIRKLMEARKLATREKDMLKHELM 314 (336)
Q Consensus 280 ~~~~kl~ea~~~i~kl~e~~r~~~~e~~~l~~e~~ 314 (336)
.|+.+-.+|+.++.+|+...-.+..||..|.+++.
T Consensus 51 ~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~ 85 (246)
T PF00769_consen 51 ELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELR 85 (246)
T ss_dssp HHHHHHHHHHHHHHHHHH------------HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555666666555555555555555543
No 132
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=25.73 E-value=2.6e+02 Score=23.56 Aligned_cols=37 Identities=19% Similarity=0.337 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHhhh
Q 019733 266 KLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLA 302 (336)
Q Consensus 266 ~~~~d~~~l~~~l~~~~~kl~ea~~~i~kl~e~~r~~ 302 (336)
.|...++.|+.++..+..+.++.+..+.++.++-+.-
T Consensus 77 ~L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~l 113 (118)
T PF13815_consen 77 YLSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKL 113 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777777777777777777777777777766654
No 133
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=25.58 E-value=2.4e+02 Score=21.80 Aligned_cols=37 Identities=22% Similarity=0.185 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHH
Q 019733 263 LELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEAR 299 (336)
Q Consensus 263 ~~~~~~~d~~~l~~~l~~~~~kl~ea~~~i~kl~e~~ 299 (336)
.+.++..+-.++.++|.-.+.++++-+.-|..|+++-
T Consensus 19 EL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ 55 (61)
T PF08826_consen 19 ELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEM 55 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667888999999999999999999999998764
No 134
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=25.54 E-value=2.6e+02 Score=21.52 Aligned_cols=39 Identities=13% Similarity=0.396 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHhh
Q 019733 263 LELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKL 301 (336)
Q Consensus 263 ~~~~~~~d~~~l~~~l~~~~~kl~ea~~~i~kl~e~~r~ 301 (336)
...++..+++.++.++..++.+.++-+.-|.+|....|.
T Consensus 25 ~~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~~~~rI 63 (85)
T TIGR02209 25 QTRQLNNELQKLQLEIDKLQKEWRDLQLEVAELSRHERI 63 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHH
Confidence 345666777777777777777777777777777665554
No 135
>PRK06008 flgL flagellar hook-associated protein FlgL; Validated
Probab=25.51 E-value=2.8e+02 Score=27.40 Aligned_cols=68 Identities=9% Similarity=0.083 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHH----------HHhhhhHHHHHhhhhhhhcccccccCCcccccCCc
Q 019733 263 LELKLAKDFEELKLKLNVMDSQLREAEHTIRKLME----------ARKLATREKDMLKHELMAPAITTLPFGSRTRTGGL 332 (336)
Q Consensus 263 ~~~~~~~d~~~l~~~l~~~~~kl~ea~~~i~kl~e----------~~r~~~~e~~~l~~e~~~~~~~~~~~~~~~~~~~~ 332 (336)
.+....+-+...++.|+.+++-|......+.++|+ .|+..-+|-..+.++|+-.+=+. +|.|.--||.
T Consensus 61 ~~~qy~~n~~~a~~~l~~~~~aL~~v~~~~~~~~~~l~~~~~~~~~~~aia~e~~~~~~~l~~~~Nt~--~~G~ylFsG~ 138 (348)
T PRK06008 61 RLASLTDSNSLVTQRLTATQTALGQIIEAAQSFLNDLLAANSSAQTAATVAQSARSALSSLTSTLNTS--VNGEYLFAGI 138 (348)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHhcCC--cCCeeeecCc
Confidence 45556778889999999999999999999999998 66677777788888888887776 5666555554
No 136
>KOG3501 consensus Molecular chaperone Prefoldin, subunit 1 [Posttranslational modification, protein turnover, chaperones]
Probab=25.39 E-value=1.5e+02 Score=25.66 Aligned_cols=38 Identities=24% Similarity=0.414 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHhh
Q 019733 264 ELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKL 301 (336)
Q Consensus 264 ~~~~~~d~~~l~~~l~~~~~kl~ea~~~i~kl~e~~r~ 301 (336)
.-...++|+.|..+-.-||--+.|||.-+.+|-+.||.
T Consensus 76 ~k~see~IeaLqkkK~YlEk~v~eaE~nLrellqs~~~ 113 (114)
T KOG3501|consen 76 MKSSEEKIEALQKKKTYLEKTVSEAEQNLRELLQSRRA 113 (114)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 34466899999999999999999999999999988774
No 137
>PRK14127 cell division protein GpsB; Provisional
Probab=25.26 E-value=2e+02 Score=24.62 Aligned_cols=38 Identities=11% Similarity=0.228 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHh
Q 019733 263 LELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARK 300 (336)
Q Consensus 263 ~~~~~~~d~~~l~~~l~~~~~kl~ea~~~i~kl~e~~r 300 (336)
.+..|++|++.|-.++..|..+++..+..+..+..+.+
T Consensus 31 FLd~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~ 68 (109)
T PRK14127 31 FLDDVIKDYEAFQKEIEELQQENARLKAQVDELTKQVS 68 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45567777777777777777777766666666665444
No 138
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=25.25 E-value=2.4e+02 Score=27.87 Aligned_cols=27 Identities=30% Similarity=0.532 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHhHHHhhHHHHHHHHHH
Q 019733 269 KDFEELKLKLNVMDSQLREAEHTIRKL 295 (336)
Q Consensus 269 ~d~~~l~~~l~~~~~kl~ea~~~i~kl 295 (336)
+.+++|...-..++.++++.+....+|
T Consensus 64 ~eL~~LE~e~~~l~~el~~le~e~~~l 90 (314)
T PF04111_consen 64 QELEELEKEREELDQELEELEEELEEL 90 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333
No 139
>PF14203 DUF4319: Domain of unknown function (DUF4319); PDB: 2L7K_A.
Probab=25.19 E-value=55 Score=25.53 Aligned_cols=30 Identities=47% Similarity=0.588 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHhH-HHhhHH-HHHHHHHHHH
Q 019733 268 AKDFEELKLKLNVM-DSQLRE-AEHTIRKLME 297 (336)
Q Consensus 268 ~~d~~~l~~~l~~~-~~kl~e-a~~~i~kl~e 297 (336)
.+=+++|+.-|.-| |+.++| |.++|.||..
T Consensus 19 ~~~i~~l~~~lp~m~d~em~eLa~~tl~KL~~ 50 (64)
T PF14203_consen 19 EGTIENLTAALPYMDDSEMRELAESTLRKLDA 50 (64)
T ss_dssp HHHHHHHHHSTTTS--HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHHHHh
Confidence 45588899889999 888887 8999999963
No 140
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=24.79 E-value=2.6e+02 Score=27.73 Aligned_cols=45 Identities=20% Similarity=0.284 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhhHH----HHHHHHHHHHHHhhhhHHHH
Q 019733 263 LELKLAKDFEELKLKLNVMDSQLRE----AEHTIRKLMEARKLATREKD 307 (336)
Q Consensus 263 ~~~~~~~d~~~l~~~l~~~~~kl~e----a~~~i~kl~e~~r~~~~e~~ 307 (336)
.+.+...+|+.|+.+|..+..+|++ ++.++.++..++....++|.
T Consensus 9 KL~et~~~V~~m~~~L~~~~~~L~~k~~e~e~ll~~i~~~~~~a~~~~~ 57 (344)
T PF12777_consen 9 KLKETEEQVEEMQEELEEKQPELEEKQKEAEELLEEIEKEQEEAEKKKA 57 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445568999999999988887776 45555555444444444443
No 141
>PHA02047 phage lambda Rz1-like protein
Probab=24.71 E-value=2.6e+02 Score=23.79 Aligned_cols=44 Identities=7% Similarity=0.172 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHhhhhHHHHHhhhhhh
Q 019733 268 AKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELM 314 (336)
Q Consensus 268 ~~d~~~l~~~l~~~~~kl~ea~~~i~kl~e~~r~~~~e~~~l~~e~~ 314 (336)
-+..++|.+.|..++.++.--++-+-+|... ++.|+ +.++.+|.
T Consensus 33 h~~a~~la~qLE~a~~r~~~~Q~~V~~l~~k--ae~~t-~Ei~~aL~ 76 (101)
T PHA02047 33 HEEAKRQTARLEALEVRYATLQRHVQAVEAR--TNTQR-QEVDRALD 76 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH-HHHHHHHH
Confidence 3778899999999999999999999999766 43443 44556665
No 142
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=24.47 E-value=2.9e+02 Score=24.66 Aligned_cols=26 Identities=23% Similarity=0.310 Sum_probs=18.4
Q ss_pred CchhHHHHHHHHHHHHHHHHHHhHHH
Q 019733 258 PAKDILELKLAKDFEELKLKLNVMDS 283 (336)
Q Consensus 258 ~~~~~~~~~~~~d~~~l~~~l~~~~~ 283 (336)
+....+...+.+++.+|+.+++..-+
T Consensus 36 ~~~~~~~~~l~~Ei~~l~~E~~~iS~ 61 (161)
T PF04420_consen 36 SKSSKEQRQLRKEILQLKRELNAISA 61 (161)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHTTS-T
T ss_pred ccccHHHHHHHHHHHHHHHHHHcCCc
Confidence 34445778888999999998887544
No 143
>smart00338 BRLZ basic region leucin zipper.
Probab=23.98 E-value=2.5e+02 Score=20.93 Aligned_cols=36 Identities=22% Similarity=0.329 Sum_probs=18.3
Q ss_pred HHhHHHhhHHHHHHHHHHHHHHhhhhHHHHHhhhhh
Q 019733 278 LNVMDSQLREAEHTIRKLMEARKLATREKDMLKHEL 313 (336)
Q Consensus 278 l~~~~~kl~ea~~~i~kl~e~~r~~~~e~~~l~~e~ 313 (336)
+..|+.+...-+.....|+.+-..-.+|-+.|++++
T Consensus 28 ~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 28 IEELERKVEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444455555555555555666666654
No 144
>PF09640 DUF2027: Domain of unknown function (DUF2027); InterPro: IPR018598 This protein domain is of unknown function. though putatively involved in DNA mismatch repair. It is associated with IPR002625 from INTERPRO. ; PDB: 2HUH_A.
Probab=23.97 E-value=1.1e+02 Score=27.99 Aligned_cols=66 Identities=14% Similarity=0.115 Sum_probs=44.7
Q ss_pred eEEEEEEEcCCCCeEEEEEeeCCCCcEEEeCCceeeCCCCeEEEEE-EeccCcCCCCCCCCCCeEEEEEEEcCCC
Q 019733 23 STCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKAISDFTV-TMQAQRVAPPDLQCKDKFLIQGIVVPFG 96 (336)
Q Consensus 23 ~s~~LtLtN~S~~~VAFKVKTTaP~rY~VrPn~GiI~Pgesi~I~I-Tlqa~~~~P~d~k~kDKFLVqs~~vp~g 96 (336)
..-..-|.|-|+.++.|-.-+...+.|.+| +.|.|+|+..+-|.- ..... ..-.+..||.+.--.+
T Consensus 18 T~fE~YlVNDSNYy~~y~y~~~~g~~w~lr-s~G~iEPNtKl~ieef~~~eL-------N~~~~v~vQ~iAyK~~ 84 (162)
T PF09640_consen 18 TRFECYLVNDSNYYLHYTYLTAEGNSWTLR-SAGEIEPNTKLFIEEFSKEEL-------NDLERVAVQLIAYKKD 84 (162)
T ss_dssp --EEEEEEE-SSSEEEEEEEEEETTEEEEE-EEEEE-TTEEEEEEEE-GGGG-------GG-SSEEEEEEEE-SS
T ss_pred CceEEEEEecCccEEEEEEEeccCCeEEEE-ecceECCCceeehhhcCHHHh-------hccceeEEEEEEEcCC
Confidence 345677899999999999998888899988 789999999988853 32211 2245566666666544
No 145
>PRK14139 heat shock protein GrpE; Provisional
Probab=23.84 E-value=2.1e+02 Score=26.52 Aligned_cols=41 Identities=12% Similarity=0.146 Sum_probs=19.4
Q ss_pred HHHHHHHHhHHHhhHHHHHHHHHHHH----HHhhhhHHHHHhhhh
Q 019733 272 EELKLKLNVMDSQLREAEHTIRKLME----ARKLATREKDMLKHE 312 (336)
Q Consensus 272 ~~l~~~l~~~~~kl~ea~~~i~kl~e----~~r~~~~e~~~l~~e 312 (336)
+.|+.+|..++.++.+.+....++.- -||++.+||+.++.-
T Consensus 35 ~~l~~~l~~le~e~~elkd~~lR~~AefeN~rKR~~kE~e~~~~~ 79 (185)
T PRK14139 35 PALEAELAEAEAKAAELQDSFLRAKAETENVRRRAQEDVAKAHKF 79 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444443333333322 255667777776654
No 146
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=23.81 E-value=1.4e+02 Score=33.00 Aligned_cols=39 Identities=31% Similarity=0.452 Sum_probs=27.1
Q ss_pred ccccc-CCCchhH--HHHHHHHHHHHHHHHHHhHHHhhHHHH
Q 019733 251 EDASE-LKPAKDI--LELKLAKDFEELKLKLNVMDSQLREAE 289 (336)
Q Consensus 251 ~~~~~-~~~~~~~--~~~~~~~d~~~l~~~l~~~~~kl~ea~ 289 (336)
++|++ +..-..+ +.++|--.|-+||.||..||..-.|-|
T Consensus 160 EmLQqellsrtsLETqKlDLmaevSeLKLkltalEkeq~e~E 201 (861)
T KOG1899|consen 160 EMLQQELLSRTSLETQKLDLMAEVSELKLKLTALEKEQNETE 201 (861)
T ss_pred HHHHHHHHhhhhHHHHHhHHHHHHHHhHHHHHHHHHHhhhHH
Confidence 34555 4444444 677888999999999999985444443
No 147
>PF10342 GPI-anchored: Ser-Thr-rich glycosyl-phosphatidyl-inositol-anchored membrane family; InterPro: IPR018466 This entry represents glycoproteins involved in cell wall (1-->6)-beta-glucan assembly. In yeast a null mutation leads to severe growth defects, aberrant multi-budded morphology, and mating defects [, ]. The entry includes DRMIP and Hesp-379, which are involved in both fruiting body formation and in host attack respectively. Hesp-379 is a haustorially expressed secreted protein; the haustorium being the small sucker that penetrates host tissue [].
Probab=23.60 E-value=3.4e+02 Score=20.73 Aligned_cols=58 Identities=10% Similarity=0.092 Sum_probs=36.1
Q ss_pred CeeEEeccCCCeeEEEEEEEcCCC--CeEEEEEee---CCCCcEEEeCCceeeCCCCeEEEEEE
Q 019733 11 LELKFTFEVKKQSTCVIQLGNKSD--QCVAFKVKT---TSPKKYCVRPNVSIIKPKAISDFTVT 69 (336)
Q Consensus 11 ~EL~F~~p~~k~~s~~LtLtN~S~--~~VAFKVKT---TaP~rY~VrPn~GiI~Pgesi~I~IT 69 (336)
-.+.+...........|.|.|-.+ -.....|.+ ++.+.|.+.++.+ |.++....|.|.
T Consensus 15 ~~I~W~~~~~~~~~~~I~L~~g~~~~~~~~~~ia~~v~~~~gs~~~~~p~~-l~~~~~Y~i~~~ 77 (93)
T PF10342_consen 15 ITITWTSDGTDPGNVTIYLCNGNNTNLNFVQTIASNVSNSDGSYTWTIPSD-LPSGGDYFIQIV 77 (93)
T ss_pred EEEEEeCCCCCCcEEEEEEEcCCCCCcceeEEEEecccCCCCEEEEEcCCC-CCCCCcEEEEEE
Confidence 356676654456778999998866 222233432 2237788888775 555556777766
No 148
>PF15458 NTR2: Nineteen complex-related protein 2
Probab=23.44 E-value=2.2e+02 Score=27.41 Aligned_cols=49 Identities=14% Similarity=0.249 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHhhhhHHHHHhhhhh
Q 019733 265 LKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHEL 313 (336)
Q Consensus 265 ~~~~~d~~~l~~~l~~~~~kl~ea~~~i~kl~e~~r~~~~e~~~l~~e~ 313 (336)
..|...++.|.+.|+.|+.....-...+..|+.|...-....+.||++|
T Consensus 204 P~L~~~~~rL~~~l~~le~~~~~~~~~l~~l~~E~~~I~~re~elq~~l 252 (254)
T PF15458_consen 204 PSLSECLERLRESLSSLEDSKSQLQQQLESLEKEKEEIEEREKELQELL 252 (254)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3466677999999999999999988899999888777444455666654
No 149
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=23.26 E-value=3.1e+02 Score=27.37 Aligned_cols=60 Identities=22% Similarity=0.194 Sum_probs=32.3
Q ss_pred CchhH-HHHHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHhhhhHHHHHhhhhhhhcc
Q 019733 258 PAKDI-LELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELMAPA 317 (336)
Q Consensus 258 ~~~~~-~~~~~~~d~~~l~~~l~~~~~kl~ea~~~i~kl~e~~r~~~~e~~~l~~e~~~~~ 317 (336)
|+|.. ....+.=.|+-||-+|..|+--+-+....+.+...+-..--+..|.|+.|+..+-
T Consensus 100 naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lr 160 (302)
T PF09738_consen 100 NAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELR 160 (302)
T ss_pred HhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444 4445666677777777776665555554443333333333445556666665543
No 150
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=23.23 E-value=3.6e+02 Score=23.86 Aligned_cols=22 Identities=32% Similarity=0.593 Sum_probs=8.2
Q ss_pred HHHHHhHHHhhHHHHHHHHHHH
Q 019733 275 KLKLNVMDSQLREAEHTIRKLM 296 (336)
Q Consensus 275 ~~~l~~~~~kl~ea~~~i~kl~ 296 (336)
+.++..++....+....+..|+
T Consensus 129 ~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 129 EERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 151
>PF12210 Hrs_helical: Hepatocyte growth factor-regulated tyrosine kinase substrate; InterPro: IPR024641 This domain comprises the helical region of hepatocyte growth factor-regulated tyrosine kinase substrate (HRS). It is approximately 100 amino acids in length. Hrs, together with signal transducing adaptor molecule (STAM), forms the ESCRT-0 complex, which sorts ubiquitinated cell surface receptors to lysosomes for degradation []. ; PDB: 3F1I_H.
Probab=23.06 E-value=3e+02 Score=23.26 Aligned_cols=31 Identities=29% Similarity=0.345 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHhh
Q 019733 267 LAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKL 301 (336)
Q Consensus 267 ~~~d~~~l~~~l~~~~~kl~ea~~~i~kl~e~~r~ 301 (336)
-...+|.|..||+ +.+||..++--||+|-+.
T Consensus 58 ~R~~~E~lQdkL~----qi~eAR~AlDalR~eH~~ 88 (96)
T PF12210_consen 58 KRVYYEGLQDKLA----QIKEARAALDALREEHRE 88 (96)
T ss_dssp HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 3445556666664 457899999999988654
No 152
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=22.45 E-value=2.2e+02 Score=22.47 Aligned_cols=32 Identities=28% Similarity=0.480 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHhHHHhhHHHHHHHHHH
Q 019733 264 ELKLAKDFEELKLKLNVMDSQLREAEHTIRKL 295 (336)
Q Consensus 264 ~~~~~~d~~~l~~~l~~~~~kl~ea~~~i~kl 295 (336)
...+...+..+.+++..++..+++++.++..|
T Consensus 7 ~~~l~~~l~~~~~q~~~l~~~~~~~~~~~~eL 38 (106)
T PF01920_consen 7 FQELNQQLQQLEQQIQQLERQLRELELTLEEL 38 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666666666655554443
No 153
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=22.43 E-value=3.9e+02 Score=25.56 Aligned_cols=49 Identities=20% Similarity=0.306 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHhhhhHHHHHhhhhh
Q 019733 265 LKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHEL 313 (336)
Q Consensus 265 ~~~~~d~~~l~~~l~~~~~kl~ea~~~i~kl~e~~r~~~~e~~~l~~e~ 313 (336)
..+-.||..|-.-+...++..+.++..|.+|.+|=+.--.+=|.+..|+
T Consensus 56 rqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e~ 104 (230)
T PF10146_consen 56 RQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKEY 104 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445677777777777777777777888888877777667777777773
No 154
>PRK14127 cell division protein GpsB; Provisional
Probab=22.39 E-value=1e+02 Score=26.32 Aligned_cols=34 Identities=18% Similarity=0.212 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHH
Q 019733 265 LKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEA 298 (336)
Q Consensus 265 ~~~~~d~~~l~~~l~~~~~kl~ea~~~i~kl~e~ 298 (336)
..+.+.+.+|+.++..|+.+|.+.+..+...+..
T Consensus 40 e~l~~e~~~Lk~e~~~l~~~l~e~~~~~~~~~~~ 73 (109)
T PRK14127 40 EAFQKEIEELQQENARLKAQVDELTKQVSVGASS 73 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 5677899999999999999999999988876544
No 155
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=22.13 E-value=3e+02 Score=20.82 Aligned_cols=54 Identities=11% Similarity=0.102 Sum_probs=34.0
Q ss_pred CCeeEEEEEEEcCCCC-eEEEEEeeCCCCcEEEeCCceeeCCCCeEEEEEEeccC
Q 019733 20 KKQSTCVIQLGNKSDQ-CVAFKVKTTSPKKYCVRPNVSIIKPKAISDFTVTMQAQ 73 (336)
Q Consensus 20 ~k~~s~~LtLtN~S~~-~VAFKVKTTaP~rY~VrPn~GiI~Pgesi~I~ITlqa~ 73 (336)
++...-.++|+|.... .=.|+|+-...+...-.-..+-|.||++..+.+++...
T Consensus 18 g~~~~i~~~V~N~G~~~~~~~~v~~~~~~~~~~~~~i~~L~~g~~~~v~~~~~~~ 72 (101)
T PF07705_consen 18 GEPVTITVTVKNNGTADAENVTVRLYLDGNSVSTVTIPSLAPGESETVTFTWTPP 72 (101)
T ss_dssp TSEEEEEEEEEE-SSS-BEEEEEEEEETTEEEEEEEESEB-TTEEEEEEEEEE-S
T ss_pred CCEEEEEEEEEECCCCCCCCEEEEEEECCceeccEEECCcCCCcEEEEEEEEEeC
Confidence 4677889999999764 34566653333333222333789999999999998764
No 156
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=22.02 E-value=2.4e+02 Score=27.06 Aligned_cols=58 Identities=16% Similarity=0.235 Sum_probs=49.5
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHhhhhHHHHHhhhhh
Q 019733 256 LKPAKDILELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHEL 313 (336)
Q Consensus 256 ~~~~~~~~~~~~~~d~~~l~~~l~~~~~kl~ea~~~i~kl~e~~r~~~~e~~~l~~e~ 313 (336)
+.+.++..+..+...++.|+..+..|.-.+++...-|.+|.++.|---++-|.+-+.+
T Consensus 48 ~~~~~~~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~r~~~~ 105 (263)
T PRK10803 48 ISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDSLSSGG 105 (263)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5566666778899999999999999999999999999999999998777777765544
No 157
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=21.94 E-value=1e+02 Score=29.73 Aligned_cols=28 Identities=29% Similarity=0.423 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHHHhhHHHHHHHHHHHHH
Q 019733 271 FEELKLKLNVMDSQLREAEHTIRKLMEA 298 (336)
Q Consensus 271 ~~~l~~~l~~~~~kl~ea~~~i~kl~e~ 298 (336)
+++|+.+|..+++++++.+..|.||-++
T Consensus 1 l~~lq~~l~~l~~~~~~~~~L~~kLE~D 28 (248)
T PF08172_consen 1 LEELQKELSELEAKLEEQKELNAKLEND 28 (248)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 158
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=21.91 E-value=3.8e+02 Score=21.92 Aligned_cols=37 Identities=35% Similarity=0.519 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHhhhhHHHHHhhhh
Q 019733 269 KDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHE 312 (336)
Q Consensus 269 ~d~~~l~~~l~~~~~kl~ea~~~i~kl~e~~r~~~~e~~~l~~e 312 (336)
-.|++||.|=+.|..+.++|.+. |..=-+|-+.||+|
T Consensus 25 mEieELKekn~~L~~e~~~~~~~-------r~~L~~en~qLk~E 61 (79)
T PRK15422 25 MEIEELKEKNNSLSQEVQNAQHQ-------REELERENNHLKEQ 61 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh-------HHHHHHHHHHHHHH
Confidence 34555555544444444443333 33333444455554
No 159
>PRK09039 hypothetical protein; Validated
Probab=21.72 E-value=2.4e+02 Score=28.27 Aligned_cols=29 Identities=17% Similarity=0.274 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhhHHHHHH
Q 019733 263 LELKLAKDFEELKLKLNVMDSQLREAEHT 291 (336)
Q Consensus 263 ~~~~~~~d~~~l~~~l~~~~~kl~ea~~~ 291 (336)
+..-|..+|+.|+..|..+++.|.+|+..
T Consensus 138 ~V~~L~~qI~aLr~Qla~le~~L~~ae~~ 166 (343)
T PRK09039 138 QVELLNQQIAALRRQLAALEAALDASEKR 166 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456677777777777777766665543
No 160
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=21.52 E-value=2.6e+02 Score=28.39 Aligned_cols=42 Identities=26% Similarity=0.443 Sum_probs=35.6
Q ss_pred CchhHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHH
Q 019733 258 PAKDILELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEAR 299 (336)
Q Consensus 258 ~~~~~~~~~~~~d~~~l~~~l~~~~~kl~ea~~~i~kl~e~~ 299 (336)
+..|.....|.+.+..|+.-+..|..||.+|+..+..|..-+
T Consensus 313 lcrD~~q~~L~~Ev~~l~~~i~~L~~~L~~a~~~l~~L~~~~ 354 (384)
T PF03148_consen 313 LCRDPPQYGLIEEVKELRESIEALQEKLDEAEASLQKLERTR 354 (384)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566677889999999999999999999999999997544
No 161
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=21.51 E-value=1e+02 Score=26.33 Aligned_cols=21 Identities=24% Similarity=0.414 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHhHHHhhHHHH
Q 019733 269 KDFEELKLKLNVMDSQLREAE 289 (336)
Q Consensus 269 ~d~~~l~~~l~~~~~kl~ea~ 289 (336)
+||+.|..++..|+++|++.+
T Consensus 96 ~ev~~L~~RI~~Le~~l~~l~ 116 (118)
T TIGR01837 96 EEIEALSAKIEQLAVQVEELR 116 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 799999999999999887654
No 162
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=21.38 E-value=3e+02 Score=24.21 Aligned_cols=49 Identities=20% Similarity=0.239 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhh--HHHHHHHHHHHHHHhhhhHHHHHhhh
Q 019733 263 LELKLAKDFEELKLKLNVMDSQL--REAEHTIRKLMEARKLATREKDMLKH 311 (336)
Q Consensus 263 ~~~~~~~d~~~l~~~l~~~~~kl--~ea~~~i~kl~e~~r~~~~e~~~l~~ 311 (336)
+...+..++..|.++|+.|.+.+ .|+...|..|+++-..-..--+.|++
T Consensus 87 el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 87 ELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 163
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=21.25 E-value=3.7e+02 Score=24.32 Aligned_cols=18 Identities=11% Similarity=0.351 Sum_probs=8.9
Q ss_pred HHHhhHHHHHHHHHHHHH
Q 019733 281 MDSQLREAEHTIRKLMEA 298 (336)
Q Consensus 281 ~~~kl~ea~~~i~kl~e~ 298 (336)
.+..|++|..-..+++.|
T Consensus 67 ye~~L~~Ar~eA~~I~~e 84 (155)
T PRK06569 67 YNEEIDKTNTEIDRLKKE 84 (155)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344455555555555544
No 164
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=21.25 E-value=2.4e+02 Score=21.72 Aligned_cols=36 Identities=17% Similarity=0.254 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHH
Q 019733 262 ILELKLAKDFEELKLKLNVMDSQLREAEHTIRKLME 297 (336)
Q Consensus 262 ~~~~~~~~d~~~l~~~l~~~~~kl~ea~~~i~kl~e 297 (336)
..+...++.|..|+..+..+...|.+-...|.+|.+
T Consensus 51 ~~fI~as~~I~~m~~~~~~l~~~l~~l~~~~~~l~~ 86 (87)
T PF08700_consen 51 RDFIEASDEISSMENDLSELRNLLSELQQSIQSLQE 86 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 355666666777777666666666666666666543
No 165
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=21.04 E-value=1.6e+02 Score=31.25 Aligned_cols=35 Identities=26% Similarity=0.499 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHH
Q 019733 265 LKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEAR 299 (336)
Q Consensus 265 ~~~~~d~~~l~~~l~~~~~kl~ea~~~i~kl~e~~ 299 (336)
..|.+.++.|+..+..|..++++-+..|.+|..|.
T Consensus 79 sELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~ 113 (475)
T PRK13729 79 AQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDN 113 (475)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 34445555555555555555555555555554443
No 166
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=20.94 E-value=2.8e+02 Score=21.84 Aligned_cols=37 Identities=19% Similarity=0.310 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHH
Q 019733 262 ILELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEA 298 (336)
Q Consensus 262 ~~~~~~~~d~~~l~~~l~~~~~kl~ea~~~i~kl~e~ 298 (336)
-...+|.++++.+..++..|+.++...+..+.++...
T Consensus 62 ~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~ 98 (106)
T PF01920_consen 62 EAIEELEERIEKLEKEIKKLEKQLKYLEKKLKELKKK 98 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3667788888888888888888887777777766554
No 167
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=20.78 E-value=2e+02 Score=23.28 Aligned_cols=24 Identities=21% Similarity=0.411 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHhHHHhhHHH
Q 019733 265 LKLAKDFEELKLKLNVMDSQLREA 288 (336)
Q Consensus 265 ~~~~~d~~~l~~~l~~~~~kl~ea 288 (336)
..+...+++|+++-|.+-.+...+
T Consensus 39 r~l~~~~e~lr~~rN~~sk~I~~~ 62 (108)
T PF02403_consen 39 RELQQELEELRAERNELSKEIGKL 62 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHH
Confidence 444455555555555555444443
No 168
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=20.78 E-value=2.9e+02 Score=27.20 Aligned_cols=52 Identities=23% Similarity=0.274 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHhhhhHHHHHhhhhhhhc
Q 019733 265 LKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELMAP 316 (336)
Q Consensus 265 ~~~~~d~~~l~~~l~~~~~kl~ea~~~i~kl~e~~r~~~~e~~~l~~e~~~~ 316 (336)
.++..|-.+|..|+..-.+.|+-+++-...|.-=|=.=--|-++|..||.-+
T Consensus 186 ~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~l 237 (267)
T PF10234_consen 186 NNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQKL 237 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHH
Confidence 4455555555555555555556666666666555555556888888887644
No 169
>COG1561 Uncharacterized stress-induced protein [Function unknown]
Probab=20.61 E-value=1.7e+02 Score=29.24 Aligned_cols=45 Identities=18% Similarity=0.262 Sum_probs=36.6
Q ss_pred HHHHHHhHHHhhHHHHHHHHHHHHHHhhhhHHH----------HHhhhhhhhccc
Q 019733 274 LKLKLNVMDSQLREAEHTIRKLMEARKLATREK----------DMLKHELMAPAI 318 (336)
Q Consensus 274 l~~~l~~~~~kl~ea~~~i~kl~e~~r~~~~e~----------~~l~~e~~~~~~ 318 (336)
|+.+|+.|++.+..++..+..+.+.+|..+.+| +.|.||++++|.
T Consensus 159 l~~~L~~ie~~v~~v~~~~P~~~~~~~~~l~~ri~~~~~~~d~~rl~qE~al~a~ 213 (290)
T COG1561 159 LLQRLDAIEELVEKVESLMPEILEWYRERLVARLNEAQDQLDEDRLEQEVALLAQ 213 (290)
T ss_pred HHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHH
Confidence 457899999999999988888888877766665 578899998874
No 170
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=20.59 E-value=3.3e+02 Score=26.89 Aligned_cols=49 Identities=16% Similarity=0.232 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHhhhhHHHHHhhhhhhhc
Q 019733 268 AKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELMAP 316 (336)
Q Consensus 268 ~~d~~~l~~~l~~~~~kl~ea~~~i~kl~e~~r~~~~e~~~l~~e~~~~ 316 (336)
....+.++.+|...+.++.|+...|...|.+=..--.||-+|.+.+.+.
T Consensus 206 ~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~ 254 (269)
T PF05278_consen 206 KEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSI 254 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555666666666666666667666666555556666666665543
No 171
>PHA02562 46 endonuclease subunit; Provisional
Probab=20.42 E-value=3.6e+02 Score=27.79 Aligned_cols=29 Identities=24% Similarity=0.360 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhhHHHHHH
Q 019733 263 LELKLAKDFEELKLKLNVMDSQLREAEHT 291 (336)
Q Consensus 263 ~~~~~~~d~~~l~~~l~~~~~kl~ea~~~ 291 (336)
....+.+.+.+|++++..++.++.+.+..
T Consensus 300 ~~~~l~d~i~~l~~~l~~l~~~i~~~~~~ 328 (562)
T PHA02562 300 RITKIKDKLKELQHSLEKLDTAIDELEEI 328 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445556666666666666555543333
No 172
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=20.35 E-value=2.9e+02 Score=25.39 Aligned_cols=45 Identities=27% Similarity=0.260 Sum_probs=36.2
Q ss_pred HHHHHHHHHhHHHhhHHHHHHHHHHHHHHhhhhHHHHHhhhhhhh
Q 019733 271 FEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELMA 315 (336)
Q Consensus 271 ~~~l~~~l~~~~~kl~ea~~~i~kl~e~~r~~~~e~~~l~~e~~~ 315 (336)
.++|-.--+.|...|++|..+.-.|+++-...+.+-..|++||..
T Consensus 76 ~~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~~ 120 (182)
T PF15035_consen 76 SEELAQVNALLREQLEQARKANEALQEDLQKLTQDWERLRDELEQ 120 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555667788889999999999999988888888888888763
No 173
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=20.34 E-value=3e+02 Score=30.77 Aligned_cols=51 Identities=25% Similarity=0.354 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHhhhhHHHHHhhhhh
Q 019733 263 LELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHEL 313 (336)
Q Consensus 263 ~~~~~~~d~~~l~~~l~~~~~kl~ea~~~i~kl~e~~r~~~~e~~~l~~e~ 313 (336)
....+..++++|+.+|..++..+.+++..+..|+.+.....++...+++++
T Consensus 675 ~l~~l~~~l~~l~~~l~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~l 725 (1164)
T TIGR02169 675 ELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEI 725 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 174
>PRK14140 heat shock protein GrpE; Provisional
Probab=20.27 E-value=2.8e+02 Score=25.88 Aligned_cols=13 Identities=8% Similarity=0.312 Sum_probs=8.1
Q ss_pred HhhhhHHHHHhhh
Q 019733 299 RKLATREKDMLKH 311 (336)
Q Consensus 299 ~r~~~~e~~~l~~ 311 (336)
||++.+|++..+.
T Consensus 71 rkR~~rE~~~~~~ 83 (191)
T PRK14140 71 KRRIQKENEAAEK 83 (191)
T ss_pred HHHHHHHHHHHHH
Confidence 5555777766554
No 175
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=20.19 E-value=2.5e+02 Score=26.62 Aligned_cols=45 Identities=22% Similarity=0.400 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHhhhhHHHHHhhhhh
Q 019733 269 KDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHEL 313 (336)
Q Consensus 269 ~d~~~l~~~l~~~~~kl~ea~~~i~kl~e~~r~~~~e~~~l~~e~ 313 (336)
.+|=.||+.|....++|+.-+..+..|+...++-..|-...++|+
T Consensus 31 ~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~EL 75 (202)
T PF06818_consen 31 SEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENEL 75 (202)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHH
Confidence 455567777777777777777788888877777777766666655
No 176
>PRK04863 mukB cell division protein MukB; Provisional
Probab=20.15 E-value=2.8e+02 Score=33.47 Aligned_cols=50 Identities=26% Similarity=0.290 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHhhhhHHHHHhhhhh
Q 019733 264 ELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHEL 313 (336)
Q Consensus 264 ~~~~~~d~~~l~~~l~~~~~kl~ea~~~i~kl~e~~r~~~~e~~~l~~e~ 313 (336)
...+..++++|..++...+.++++++..+.++.++......+-+.|+.++
T Consensus 350 i~~l~~~LeELee~Lee~eeeLeeleeeleeleeEleelEeeLeeLqeqL 399 (1486)
T PRK04863 350 IERYQADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQL 399 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455677777777777777777776666666666555555555555444
No 177
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=20.12 E-value=2.4e+02 Score=23.05 Aligned_cols=34 Identities=15% Similarity=0.275 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHH
Q 019733 263 LELKLAKDFEELKLKLNVMDSQLREAEHTIRKLM 296 (336)
Q Consensus 263 ~~~~~~~d~~~l~~~l~~~~~kl~ea~~~i~kl~ 296 (336)
..-.+..+.+.|-++++.|++.+.|++.++..|.
T Consensus 7 ~~q~l~~~~~~l~~~~~~l~~~~~E~~~v~~EL~ 40 (105)
T cd00632 7 QLQQLQQQLQAYIVQRQKVEAQLNENKKALEELE 40 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566788899999999999999998877776665
Done!