Query 019733
Match_columns 336
No_of_seqs 153 out of 671
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 06:18:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019733.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019733hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cri_A Vesicle-associated memb 100.0 1.6E-31 5.4E-36 230.9 18.9 125 4-132 13-138 (147)
2 1wic_A Hypothetical protein ri 100.0 5E-32 1.7E-36 236.0 13.8 130 3-137 16-148 (152)
3 1z9l_A Vesicle-associated memb 100.0 4.3E-31 1.5E-35 222.5 17.6 118 4-125 9-127 (128)
4 1msp_A MSP, major sperm protei 100.0 4.6E-29 1.6E-33 210.9 16.2 119 3-125 6-125 (126)
5 1row_A SSP-19, MSP-domain prot 99.9 3.7E-25 1.3E-29 183.7 14.5 104 6-123 3-106 (109)
6 1m1s_A WR4; structural genomic 99.9 3.5E-24 1.2E-28 180.2 15.6 106 4-123 9-114 (116)
7 2ys4_A Hydrocephalus-inducing 98.2 9.6E-06 3.3E-10 66.6 10.1 78 6-90 26-104 (122)
8 2e6j_A Hydin protein; PAPD, st 97.8 7.4E-05 2.5E-09 59.5 8.0 70 4-73 8-81 (112)
9 3qbt_B Inositol polyphosphate 97.8 0.00019 6.5E-09 61.1 10.6 69 4-72 25-100 (140)
10 3qis_A Inositol polyphosphate 97.2 0.0017 5.8E-08 63.0 10.3 72 3-74 27-105 (366)
11 2qsv_A Uncharacterized protein 95.5 0.046 1.6E-06 48.9 8.5 69 5-74 2-71 (220)
12 2qsv_A Uncharacterized protein 95.0 0.11 3.6E-06 46.5 9.2 69 4-74 118-187 (220)
13 3q48_A Chaperone CUPB2; IG fol 86.1 4.2 0.00014 37.7 9.9 109 6-128 30-148 (257)
14 2co7_B SAFB chaperone, putativ 85.7 5.7 0.0002 35.8 10.4 84 6-95 14-102 (221)
15 2xg5_A PAPD, chaperone protein 85.0 8.6 0.00029 34.6 11.2 108 6-127 2-118 (218)
16 3hnw_A Uncharacterized protein 84.8 2.9 0.0001 35.5 7.5 51 265-315 85-135 (138)
17 1klf_A FIMC chaperone, chapero 81.9 11 0.00036 33.6 10.4 110 6-128 2-119 (205)
18 4djm_A DRAB; chaperone, PILI; 79.3 12 0.0004 34.3 10.0 84 6-95 24-112 (239)
19 4ay0_A Chaperone protein CAF1M 79.0 31 0.0011 31.0 12.5 108 6-127 14-128 (218)
20 1l4i_A SFAE protein; periplasm 78.7 17 0.00057 32.3 10.6 111 6-128 2-119 (206)
21 2r39_A FIXG-related protein; s 75.2 12 0.00041 30.0 7.9 52 22-73 32-84 (118)
22 1s1c_X RHO-associated, coiled- 74.0 8.6 0.0003 29.5 6.3 49 265-313 2-52 (71)
23 2eqb_B RAB guanine nucleotide 72.9 12 0.00042 30.3 7.3 53 265-317 8-60 (97)
24 1yew_A Particulate methane mon 72.7 23 0.00078 34.9 10.4 71 3-74 247-338 (382)
25 3i00_A HIP-I, huntingtin-inter 72.0 14 0.00047 30.8 7.6 57 257-316 10-80 (120)
26 3rfr_A PMOB; membrane, oxidore 71.9 18 0.00062 36.0 9.6 67 5-74 283-370 (419)
27 3gfu_C Chaperone protein FAEE; 67.7 35 0.0012 30.9 10.0 106 6-127 2-114 (224)
28 3efg_A Protein SLYX homolog; x 65.0 12 0.00041 28.8 5.5 47 271-317 9-55 (78)
29 1uix_A RHO-associated kinase; 62.8 24 0.00083 27.0 6.7 47 267-313 2-52 (71)
30 3hnw_A Uncharacterized protein 55.4 40 0.0014 28.4 7.6 45 269-313 75-119 (138)
31 4etp_A Kinesin-like protein KA 54.1 24 0.00083 34.4 6.9 52 265-316 6-57 (403)
32 2wt7_B Transcription factor MA 49.4 32 0.0011 27.4 5.6 38 279-316 51-88 (90)
33 2fxo_A Myosin heavy chain, car 48.0 47 0.0016 27.3 6.7 46 269-314 13-58 (129)
34 3vkg_A Dynein heavy chain, cyt 46.3 33 0.0011 42.2 7.5 53 264-316 2016-2068(3245)
35 2oqq_A Transcription factor HY 46.3 34 0.0012 23.7 4.6 35 278-312 5-39 (42)
36 2qyw_A Vesicle transport throu 45.1 37 0.0013 27.0 5.4 29 273-301 46-74 (102)
37 3fga_D Shugoshin-like 1; PP2A, 43.5 28 0.00095 24.7 3.8 28 273-300 14-41 (47)
38 1l8d_A DNA double-strand break 42.7 33 0.0011 27.0 4.8 42 277-318 4-45 (112)
39 3oja_B Anopheles plasmodium-re 40.4 59 0.002 32.0 7.2 19 280-298 548-566 (597)
40 3htk_A Structural maintenance 40.2 94 0.0032 21.8 7.6 37 265-301 8-44 (60)
41 3cvf_A Homer-3, homer protein 40.0 32 0.0011 26.8 4.1 48 267-314 4-51 (79)
42 4h22_A Leucine-rich repeat fli 39.0 1.1E+02 0.0037 25.0 7.3 47 258-311 18-65 (103)
43 3mq7_A Bone marrow stromal ant 38.9 42 0.0014 28.1 4.9 33 268-300 70-102 (121)
44 1vcs_A Vesicle transport throu 38.1 41 0.0014 26.7 4.6 44 275-318 37-95 (102)
45 3ljm_A Coil Ser L9C; de novo d 38.1 31 0.0011 22.0 3.1 24 266-289 5-28 (31)
46 2yy0_A C-MYC-binding protein; 37.7 48 0.0016 23.7 4.5 28 269-296 19-46 (53)
47 3l4q_C Phosphatidylinositol 3- 37.5 45 0.0015 29.4 5.2 59 259-317 86-144 (170)
48 2v66_B Nuclear distribution pr 36.1 1E+02 0.0036 25.3 6.9 45 264-311 12-56 (111)
49 3ol1_A Vimentin; structural ge 35.6 1.3E+02 0.0046 24.3 7.6 54 263-316 42-102 (119)
50 1jcd_A Major outer membrane li 35.5 86 0.0029 22.5 5.5 36 263-298 5-40 (52)
51 3n7n_E Monopolin complex subun 34.5 8.3 0.00028 31.1 0.0 34 263-296 51-95 (95)
52 1lwu_C Fibrinogen gamma chain; 34.4 63 0.0022 31.0 6.1 30 268-297 25-54 (323)
53 2ocy_A RAB guanine nucleotide 34.3 84 0.0029 27.2 6.3 26 292-317 67-92 (154)
54 2xze_Q Charged multivesicular 33.9 19 0.00064 24.8 1.7 16 268-283 25-40 (40)
55 3m91_A Proteasome-associated A 33.4 92 0.0031 22.2 5.4 34 265-298 12-45 (51)
56 3na7_A HP0958; flagellar bioge 33.4 1.2E+02 0.0042 27.3 7.7 24 265-288 93-116 (256)
57 4ani_A Protein GRPE; chaperone 32.9 80 0.0027 28.6 6.2 43 269-311 59-105 (213)
58 3m9b_A Proteasome-associated A 32.5 31 0.0011 32.2 3.5 49 269-324 54-102 (251)
59 3oja_B Anopheles plasmodium-re 32.3 90 0.0031 30.7 7.1 30 267-296 507-536 (597)
60 3i00_A HIP-I, huntingtin-inter 31.9 89 0.0031 25.8 5.9 36 266-301 37-72 (120)
61 3zy7_A AP-1 complex subunit ga 31.8 73 0.0025 25.9 5.4 69 22-94 30-104 (122)
62 3hn9_A Lamin-B1; structural ge 31.4 58 0.002 26.8 4.7 41 25-66 25-71 (123)
63 2huh_A Putative DNA mismatch r 31.1 81 0.0028 27.2 5.7 65 24-96 29-94 (147)
64 3u1c_A Tropomyosin alpha-1 cha 31.0 1.7E+02 0.0058 23.0 7.3 33 264-296 39-71 (101)
65 1nlw_A MAD protein, MAX dimeri 30.9 54 0.0019 25.0 4.1 32 285-316 42-73 (80)
66 1wt6_A Myotonin-protein kinase 30.7 1.1E+02 0.0037 24.0 5.8 29 270-298 32-60 (81)
67 3azd_A Short alpha-tropomyosin 29.6 21 0.00073 23.8 1.4 28 270-297 5-32 (37)
68 4h22_A Leucine-rich repeat fli 29.2 2.2E+02 0.0074 23.2 7.6 55 263-317 31-95 (103)
69 3swk_A Vimentin; cytoskeleton, 29.1 1.6E+02 0.0054 22.7 6.6 54 263-316 22-82 (86)
70 2dfs_A Myosin-5A; myosin-V, in 29.1 1.1E+02 0.0039 33.6 7.8 27 285-311 986-1012(1080)
71 2fxo_A Myosin heavy chain, car 29.0 1.8E+02 0.0062 23.7 7.4 50 267-316 74-123 (129)
72 1wt6_A Myotonin-protein kinase 28.6 1.5E+02 0.0053 23.1 6.3 39 263-301 32-70 (81)
73 3u59_A Tropomyosin beta chain; 28.4 2E+02 0.0069 22.4 7.3 32 265-296 40-71 (101)
74 3hhm_B NISH2 P85alpha; PI3KCA, 28.1 1.2E+02 0.004 29.5 6.9 59 260-318 196-254 (373)
75 2e7s_A RAB guanine nucleotide 27.9 58 0.002 27.7 4.1 47 271-317 27-80 (135)
76 3cve_A Homer protein homolog 1 27.4 1.1E+02 0.0039 23.2 5.3 38 276-313 7-44 (72)
77 2xzz_A Protein-glutamine gamma 26.9 1.8E+02 0.0061 23.0 6.7 55 19-74 18-75 (102)
78 1zxa_A CGMP-dependent protein 26.8 79 0.0027 23.9 4.3 33 266-298 15-47 (67)
79 1ic2_A Tropomyosin alpha chain 26.7 2E+02 0.0069 21.6 6.9 18 269-286 41-58 (81)
80 2aze_B Transcription factor E2 26.5 1.1E+02 0.0038 24.6 5.4 42 266-307 3-44 (106)
81 1gk4_A Vimentin; intermediate 26.3 1.9E+02 0.0063 22.0 6.5 14 272-285 29-42 (84)
82 1got_G GT-gamma; complex (GTP- 26.3 49 0.0017 25.2 3.0 51 249-299 2-54 (73)
83 2xv5_A Lamin-A/C; structural p 26.2 2.1E+02 0.0073 21.6 6.9 34 267-300 3-36 (74)
84 2jee_A YIIU; FTSZ, septum, coi 25.9 2.3E+02 0.0077 22.1 6.9 34 267-300 25-58 (81)
85 3bas_A Myosin heavy chain, str 25.8 1.7E+02 0.0058 22.5 6.2 40 271-310 16-55 (89)
86 3htk_A Structural maintenance 25.5 1.5E+02 0.0053 20.6 5.5 34 265-298 22-55 (60)
87 3u06_A Protein claret segregat 25.4 1.3E+02 0.0046 29.4 6.8 51 266-316 7-57 (412)
88 3a7o_A Autophagy protein 16; c 25.3 1.6E+02 0.0055 22.6 5.7 43 276-318 18-60 (75)
89 1joc_A EEA1, early endosomal a 25.2 1.2E+02 0.0042 24.7 5.6 36 265-300 14-49 (125)
90 1ic2_A Tropomyosin alpha chain 24.7 1.6E+02 0.0053 22.2 5.7 33 266-298 10-42 (81)
91 3idu_A Uncharacterized protein 23.8 3E+02 0.01 22.5 8.9 68 20-96 32-100 (127)
92 3tnu_A Keratin, type I cytoske 23.8 2.9E+02 0.01 22.4 7.7 29 262-290 45-73 (131)
93 2w6a_A ARF GTPase-activating p 23.6 2.3E+02 0.0078 21.1 6.5 52 252-312 4-56 (63)
94 2i1j_A Moesin; FERM, coiled-co 23.0 17 0.00057 37.2 -0.2 51 263-313 381-442 (575)
95 3tnu_B Keratin, type II cytosk 23.0 3E+02 0.01 22.2 7.7 28 263-290 44-71 (129)
96 1go4_E MAD1 (mitotic arrest de 22.7 1.5E+02 0.0052 23.9 5.5 25 263-287 20-44 (100)
97 3na7_A HP0958; flagellar bioge 22.5 2.3E+02 0.0079 25.4 7.4 48 269-316 53-102 (256)
98 1deb_A APC protein, adenomatou 22.4 2.2E+02 0.0076 20.5 6.4 37 265-301 6-42 (54)
99 2dfs_A Myosin-5A; myosin-V, in 22.4 1.5E+02 0.005 32.7 7.1 10 304-313 1063-1072(1080)
100 1a92_A Delta antigen; leucine 22.2 1.1E+02 0.0038 21.9 4.0 27 273-299 11-37 (50)
101 2ve7_A Kinetochore protein HEC 21.9 90 0.0031 29.4 4.7 45 269-316 185-229 (315)
102 3jt0_A Lamin-B1; structural ge 21.1 1.1E+02 0.0038 25.9 4.7 41 25-66 38-84 (144)
103 3qfl_A MLA10; coiled-coil, (CC 21.0 87 0.003 24.9 3.8 28 263-290 20-47 (115)
104 2zqm_A Prefoldin beta subunit 20.9 1.5E+02 0.0051 23.0 5.2 28 265-292 16-43 (117)
105 3twe_A Alpha4H; unknown functi 20.8 1E+02 0.0035 19.1 3.1 21 266-286 5-25 (27)
106 1fxk_A Prefoldin; archaeal pro 20.8 1.5E+02 0.005 22.7 5.0 32 264-295 10-41 (107)
107 2k48_A Nucleoprotein; viral pr 20.8 1E+02 0.0035 25.3 4.1 31 267-300 32-63 (107)
108 2l7k_A Uncharacterized protein 20.6 43 0.0015 26.0 1.7 38 268-308 21-59 (76)
109 2yy0_A C-MYC-binding protein; 20.5 97 0.0033 22.1 3.5 28 265-292 22-49 (53)
110 3f1i_H Hepatocyte growth facto 20.2 2.3E+02 0.0079 22.9 6.0 37 267-313 60-96 (98)
111 1i84_S Smooth muscle myosin he 20.1 99 0.0034 34.1 5.2 34 265-298 860-893 (1184)
No 1
>2cri_A Vesicle-associated membrane protein-associated protein A; VAP-A, VAP-33, beta sandwitch fold, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.98 E-value=1.6e-31 Score=230.93 Aligned_cols=125 Identities=34% Similarity=0.574 Sum_probs=113.8
Q ss_pred CCeEEeCC-eeEEeccCCCeeEEEEEEEcCCCCeEEEEEeeCCCCcEEEeCCceeeCCCCeEEEEEEeccCcCCCCCCCC
Q 019733 4 ELLDIQPL-ELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKAISDFTVTMQAQRVAPPDLQC 82 (336)
Q Consensus 4 ~LL~I~P~-EL~F~~p~~k~~s~~LtLtN~S~~~VAFKVKTTaP~rY~VrPn~GiI~Pgesi~I~ITlqa~~~~P~d~k~ 82 (336)
.+|.|+|. +|.|.+++++.++|.|+|+|+++++||||||||+|++|+|||++|+|.||++++|.|+|+++...| +++|
T Consensus 13 ~~L~i~P~~~L~F~~p~~~~~~~~l~L~N~s~~~VaFKVKTT~p~~y~VrP~~GiI~P~~s~~v~V~l~~~~~~p-~~~~ 91 (147)
T 2cri_A 13 QILVLDPPSDLKFKGPFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGIIDPGSIVTVSVMLQPFDYDP-NEKS 91 (147)
T ss_dssp CCSEEESSSEEEEECCSSSCCCEEEEEECCSSSCEEEEEEESCTTSEEEESSEEECCTTCEEEEEEEECCCCCCT-TCCS
T ss_pred CeEEECCCCeEEEeCCCCceEEEEEEEECCCCCcEEEEEECCCCccEEEcCCCcEECCCCeEEEEEEECCCcCCc-cccC
Confidence 68999996 899999999999999999999999999999999999999999999999999999999999986554 5699
Q ss_pred CCeEEEEEEEcCCCCCcchhhHHhhcccCCCceeEEEEEEEEeCCCCCCC
Q 019733 83 KDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVILMSPPQSPV 132 (336)
Q Consensus 83 kDKFLVqs~~vp~g~~d~dl~~~iFkk~~k~~I~ekKLrV~fv~p~~s~~ 132 (336)
+|||+||++.++++.+ ++ .++|++..+..++++||||+|+.|.+...
T Consensus 92 kDKFlVqs~~~~~~~~--d~-~~~wk~~~~~~i~e~kLrv~f~~p~~~~~ 138 (147)
T 2cri_A 92 KHKFMVQTIFAPPNIS--DM-EAVWKEAKPDELMDSKLRCVFEMPNENDK 138 (147)
T ss_dssp CCCEEEEEEECCTTCC--CH-HHHHHHSCTTTCEEEEEEEEEECSCCSSC
T ss_pred CCEEEEEEEEcCCCcc--cH-HHHhhcCCCCceEEEEEEEEEecCCCCcc
Confidence 9999999999987643 44 58999988889999999999998876643
No 2
>1wic_A Hypothetical protein riken cDNA 6030424E15; beta sandwich fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.11.2
Probab=99.97 E-value=5e-32 Score=236.03 Aligned_cols=130 Identities=29% Similarity=0.418 Sum_probs=117.5
Q ss_pred CCCeEEeCC-eeEEeccCCCeeEEEEEEEcCCCCeEEEEEeeCCCCcEEEeCCceeeCCCCeEEEEEEeccCcCCCCCCC
Q 019733 3 EELLDIQPL-ELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKAISDFTVTMQAQRVAPPDLQ 81 (336)
Q Consensus 3 s~LL~I~P~-EL~F~~p~~k~~s~~LtLtN~S~~~VAFKVKTTaP~rY~VrPn~GiI~Pgesi~I~ITlqa~~~~P~d~k 81 (336)
..+|.|+|. +|.|.+++++..+|.|+|+|+++++||||||||+|++|+|||+.|+|.||++++|.|+||++.. ..
T Consensus 16 ~~~L~i~P~~~L~F~~~~~~~~~~~l~L~N~s~~~VaFKVKTT~p~~y~VrP~~GiI~P~~s~~V~V~lq~~~~----~~ 91 (152)
T 1wic_A 16 GPLLHISPAEELYFGSIESGEKKTLIVLTNVTKNIVAFKVRTTAPEKYRVKPSNSSCDPGASIDIIVSPHGGLT----VS 91 (152)
T ss_dssp CSSBCBBSSSCBCCCCSSSSCCCEEEEEEBCSSSCEEEEEEESCTTTEEEESSEEEECTTCEEEEEEEECSSSC----CC
T ss_pred CCeEEECCCCeEEEeCCCCceEEEEEEEEcCCCCeEEEEEECCCCCceeecCCCcEECCCCeEEEEEEecCccc----CC
Confidence 468999998 8999999999999999999999999999999999999999999999999999999999999753 37
Q ss_pred CCCeEEEEEEEcC--CCCCcchhhHHhhcccCCCceeEEEEEEEEeCCCCCCCccCCC
Q 019733 82 CKDKFLIQGIVVP--FGTSDEDITSDMFAKDSGKYVEEKKLRVILMSPPQSPVLLPRN 137 (336)
Q Consensus 82 ~kDKFLVqs~~vp--~g~~d~dl~~~iFkk~~k~~I~ekKLrV~fv~p~~s~~~~~~~ 137 (336)
|+|||+||++.++ .+++..|+. ++|++..+..++++||+|+|+.+.+++++...+
T Consensus 92 ~kDKFlVqs~~v~~~~~~~~~d~~-~~wk~~~~~~i~e~kLrv~f~~~~~p~s~~~~g 148 (152)
T 1wic_A 92 AQDRFLIMAAEMEQSSGTGPAELS-QFWKEVPRNKVMEHRLRCHTVESSKPNSLMLSG 148 (152)
T ss_dssp SSCCEEEEEEECCSSCCCSHHHHH-HHHHHSCTTTCEEEEECBCCCCSCSSSSSCCCC
T ss_pred CCCEEEEEEEEcCCcCCCChhhHH-HHHhccCCCceEEEEEEEEECCCCCCCCccccC
Confidence 8999999999998 565566775 899998888999999999999998887765543
No 3
>1z9l_A Vesicle-associated membrane protein-associated protein A; VAP-A, cytoplasmic domain, protein binding; HET: MSE; 1.70A {Rattus norvegicus} PDB: 1z9o_A 2rr3_A 3ikk_A
Probab=99.97 E-value=4.3e-31 Score=222.53 Aligned_cols=118 Identities=35% Similarity=0.590 Sum_probs=108.6
Q ss_pred CCeEEeCC-eeEEeccCCCeeEEEEEEEcCCCCeEEEEEeeCCCCcEEEeCCceeeCCCCeEEEEEEeccCcCCCCCCCC
Q 019733 4 ELLDIQPL-ELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKAISDFTVTMQAQRVAPPDLQC 82 (336)
Q Consensus 4 ~LL~I~P~-EL~F~~p~~k~~s~~LtLtN~S~~~VAFKVKTTaP~rY~VrPn~GiI~Pgesi~I~ITlqa~~~~P~d~k~ 82 (336)
.+|.|+|. +|.|.+++++.++|.|+|+|+++++||||||||+|++|+|||++|+|.||++++|.|+|+++...| +.+|
T Consensus 9 ~~L~i~P~~~l~F~~p~~~~~~~~l~L~N~s~~~vaFKVKTT~p~~y~VrP~~G~i~P~~s~~v~V~~~~~~~~p-~~~~ 87 (128)
T 1z9l_A 9 QILVLDPPSDLKFKGPFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGVIDPGSIVTVSVMLQPFDYDP-NEKS 87 (128)
T ss_dssp CCSEEESSSEEEEESCCSSCEEEEEEEECCSSSCEEEEEEESCGGGEEEESCEEEECTTCEEEEEEEECCCCCCT-TCCC
T ss_pred CeEEECCCCeEEEcCCCCceEEEEEEEECCCCCeEEEEEECCCCCceEEeCCCcEECCCCeEEEEEEECcCcCCc-cccc
Confidence 68999996 999999999999999999999999999999999999999999999999999999999999986654 5689
Q ss_pred CCeEEEEEEEcCCCCCcchhhHHhhcccCCCceeEEEEEEEEe
Q 019733 83 KDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVILM 125 (336)
Q Consensus 83 kDKFLVqs~~vp~g~~d~dl~~~iFkk~~k~~I~ekKLrV~fv 125 (336)
+|||+||++.++++.+ ++ .++|++..+..++++||||+|.
T Consensus 88 ~dkF~V~s~~~~~~~~--~~-~~~w~~~~~~~i~e~kLrv~f~ 127 (128)
T 1z9l_A 88 KHKFMVQTIFAPPNIS--DM-EAVWKEAKPDELMDSKLRCVFE 127 (128)
T ss_dssp CCEEEEEEEECCTTCS--CH-HHHHHSCCGGGCEEEEEEEEEE
T ss_pred CCEEEEEEEECCCCcc--hH-HHHhhcCCCCceEEEEEEEEEe
Confidence 9999999999998653 45 5899998888999999999995
No 4
>1msp_A MSP, major sperm protein; cytoskeletal protein, cell motility protein; 2.50A {Ascaris suum} SCOP: b.1.11.2 PDB: 3msp_A 2bvu_A 2msp_A 1grw_A
Probab=99.96 E-value=4.6e-29 Score=210.94 Aligned_cols=119 Identities=20% Similarity=0.321 Sum_probs=105.9
Q ss_pred CCCeEEeCC-eeEEeccCCCeeEEEEEEEcCCCCeEEEEEeeCCCCcEEEeCCceeeCCCCeEEEEEEeccCcCCCCCCC
Q 019733 3 EELLDIQPL-ELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKAISDFTVTMQAQRVAPPDLQ 81 (336)
Q Consensus 3 s~LL~I~P~-EL~F~~p~~k~~s~~LtLtN~S~~~VAFKVKTTaP~rY~VrPn~GiI~Pgesi~I~ITlqa~~~~P~d~k 81 (336)
...|.++|. +|.|++++++..+|.|+|+|+|+++||||||||+|++|||||++|+|.||+++.|.|+||++.+.|++ .
T Consensus 6 ~~~l~i~P~~~l~F~~p~~~~~~~~l~l~N~s~~~vaFKVKTT~p~~y~VrP~~Gii~P~~s~~v~V~~q~~~~~~~~-~ 84 (126)
T 1msp_A 6 PGDINTQPSQKIVFNAPYDDKHTYHIKITNAGGRRIGWAIKTTNMRRLSVDPPCGVLDPKEKVLMAVSCDTFNAATED-L 84 (126)
T ss_dssp CCCEEEESSSCEEEESCCSSCCCEEEEEEECSSSCEEEEEEESCTTTEEEESCEEEECTTCEEEEEEEECCCCGGGSC-C
T ss_pred CCeEEEcCCCeEEEcCcCCcceEEEEEEECCCCCeEEEEEEcCCCCcEEEECCCeEECCCCEEEEEEEecCCCCCCCc-c
Confidence 467999997 89999999999999999999999999999999999999999999999999999999999999877655 4
Q ss_pred CCCeEEEEEEEcCCCCCcchhhHHhhcccCCCceeEEEEEEEEe
Q 019733 82 CKDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVILM 125 (336)
Q Consensus 82 ~kDKFLVqs~~vp~g~~d~dl~~~iFkk~~k~~I~ekKLrV~fv 125 (336)
.+|||+|||+.+++|.+ +++...||.. + ..+..++|+|.|.
T Consensus 85 ~kDKf~Vq~~~~p~~~~-~~~~~~wf~~-d-~~~~~k~L~V~Yn 125 (126)
T 1msp_A 85 NNDRITIEWTNTPDGAA-KQFRREWFQG-D-GMVRRKNLPIEYN 125 (126)
T ss_dssp SSCEEEEEEEECCTTCC-SSCCTHHHHS-S-SCCEEEEEEEEEE
T ss_pred CCCEEEEEEEECCCCcc-hhhhHHhhcC-C-CceEEEEEEEEec
Confidence 49999999999998763 5787666644 3 3689999999985
No 5
>1row_A SSP-19, MSP-domain protein like family member; beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Caenorhabditis elegans} SCOP: b.1.11.2
Probab=99.93 E-value=3.7e-25 Score=183.74 Aligned_cols=104 Identities=17% Similarity=0.271 Sum_probs=89.7
Q ss_pred eEEeCCeeEEeccCCCeeEEEEEEEcCCCCeEEEEEeeCCCCcEEEeCCceeeCCCCeEEEEEEeccCcCCCCCCCCCCe
Q 019733 6 LDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKAISDFTVTMQAQRVAPPDLQCKDK 85 (336)
Q Consensus 6 L~I~P~EL~F~~p~~k~~s~~LtLtN~S~~~VAFKVKTTaP~rY~VrPn~GiI~Pgesi~I~ITlqa~~~~P~d~k~kDK 85 (336)
|.|+|.+|.|.++. .+|.|+|+|+++++||||||||+|++|||||++|+|+||++++|.|++|++ + .++||
T Consensus 3 L~i~P~~l~F~~~~---~~~~l~L~N~t~~~vaFKVKtT~p~~y~VrP~~G~I~P~~~~~i~I~~q~~---~---~~~dK 73 (109)
T 1row_A 3 LTADPPACTVPAAG---VSSTHKLVNGGAEKIVFKIKSSNNNEYRIAPVFGFVDPSGSKDVVITRTAG---A---PKEDK 73 (109)
T ss_dssp CEEESSSEEEETTC---EEEEEEEEECSSSCEEEEEEESCSSSEEEECSEEEECTTEEEEEEEEECSC---C---CEEEE
T ss_pred EEEECCEeEEeCCC---CeEEEEEEcCCCCeEEEEEEeCCCCceEEcCCceEECCCCeEEEEEEeCCC---C---CCCCE
Confidence 89999999999873 479999999999999999999999999999999999999999999999985 2 46999
Q ss_pred EEEEEEEcCCCCCcchhhHHhhcccCCCceeEEEEEEE
Q 019733 86 FLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVI 123 (336)
Q Consensus 86 FLVqs~~vp~g~~d~dl~~~iFkk~~k~~I~ekKLrV~ 123 (336)
|+||++.++++. .|. +++|++... ..+.+|++.
T Consensus 74 flvq~~~~~~~~--~d~-~~~fk~~~~--~g~~~i~l~ 106 (109)
T 1row_A 74 LVVHFASAPADA--TDA-QAAFVAVAP--AGTVTIPMS 106 (109)
T ss_dssp EEEEEEECCTTC--SCH-HHHHTTCCC--CEEEEEEEE
T ss_pred EEEEEEECCCCC--CCH-HHHhhcCCC--CceEEEEEE
Confidence 999999998763 343 589998654 455666654
No 6
>1m1s_A WR4; structural genomics, major sperm protein, bioinformatics, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: b.1.11.2
Probab=99.92 E-value=3.5e-24 Score=180.20 Aligned_cols=106 Identities=24% Similarity=0.367 Sum_probs=91.7
Q ss_pred CCeEEeCCeeEEeccCCCeeEEEEEEEcCCCCeEEEEEeeCCCCcEEEeCCceeeCCCCeEEEEEEeccCcCCCCCCCCC
Q 019733 4 ELLDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKAISDFTVTMQAQRVAPPDLQCK 83 (336)
Q Consensus 4 ~LL~I~P~EL~F~~p~~k~~s~~LtLtN~S~~~VAFKVKTTaP~rY~VrPn~GiI~Pgesi~I~ITlqa~~~~P~d~k~k 83 (336)
..+.++|.+|.|.+. .++|.|+|+|+++.+||||||||+|++|||||++|+|+||++++|.|++|++ + .++
T Consensus 9 ~~~~~~p~~l~F~~~---gg~~~l~L~N~t~~~vAFKVKtT~p~~YrVrP~~G~I~Pg~~~~I~I~~q~~---~---~k~ 79 (116)
T 1m1s_A 9 SMINVDPPTGNYPAT---GGNSTHNITSESDSRLAFKVKSSNNEHYRVRPVYGFVDAKGKSKLDINRLPG---P---PKE 79 (116)
T ss_dssp CSEEEESSEEEECTT---CEEEEEEEEECSSSEEEEEEEESCTTTEEEECSEEEECTTCEEEEEEEECSC---C---SCE
T ss_pred eeeecCCCeEEEecC---CCEEEEEEECCCCCeEEEEEEecCCCceEEcCCceEECCCCeEEEEEEeCCC---C---CCC
Confidence 468899999999875 3589999999999999999999999999999999999999999999999986 2 459
Q ss_pred CeEEEEEEEcCCCCCcchhhHHhhcccCCCceeEEEEEEE
Q 019733 84 DKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVI 123 (336)
Q Consensus 84 DKFLVqs~~vp~g~~d~dl~~~iFkk~~k~~I~ekKLrV~ 123 (336)
|||+||++.++++.. |. +++|++..+ ..+.+|++.
T Consensus 80 DKflVq~~~~~~d~~--d~-~~~fk~~~~--~g~~~i~l~ 114 (116)
T 1m1s_A 80 DKIVIQYAEVPAEET--DP-MAPFKAGAQ--QGEIIVKLI 114 (116)
T ss_dssp EEEEEEEEEECTTCC--CT-THHHHTTCC--CEEEEEEEE
T ss_pred CEEEEEEEECCCCCC--CH-HHHHhcCCC--CceEEEEEE
Confidence 999999999987542 43 489998754 577777764
No 7
>2ys4_A Hydrocephalus-inducing protein homolog; hydin, PAPD-like, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.18 E-value=9.6e-06 Score=66.62 Aligned_cols=78 Identities=19% Similarity=0.396 Sum_probs=61.7
Q ss_pred eEEeCCeeEEec-cCCCeeEEEEEEEcCCCCeEEEEEeeCCCCcEEEeCCceeeCCCCeEEEEEEeccCcCCCCCCCCCC
Q 019733 6 LDIQPLELKFTF-EVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKAISDFTVTMQAQRVAPPDLQCKD 84 (336)
Q Consensus 6 L~I~P~EL~F~~-p~~k~~s~~LtLtN~S~~~VAFKVKTTaP~rY~VrPn~GiI~Pgesi~I~ITlqa~~~~P~d~k~kD 84 (336)
|.+ |+.|.|-. +.+......+.|+|.++.++.|++++. .-|.|.|+.|.|.||+++.|.|++.|.... ....
T Consensus 26 l~~-p~~l~fg~~~v~~~~~~~~~l~N~g~~~~~f~~~~~--~~F~i~P~~g~L~pg~~~~i~V~F~P~~~g----~~~~ 98 (122)
T 2ys4_A 26 LDF-PDKLNFSTCPVKYSTQKILLVRNIGNKNAVFHIKTC--RPFSIEPAIGTLNVGESMQLEVEFEPQSVG----DHSG 98 (122)
T ss_dssp CCC-CSEECCCSEESSSCEEEEEEEECCSSSCEEEEEECC--TTEEEESSEEEECTTCEEEEEEEECCSSSB----CCCC
T ss_pred ECC-CCeeecCCeecCCeEEEEEEEEECCCCCEEEEEecC--CCeEEECCcCEECCCCEEEEEEEEEcCCCc----cEEE
Confidence 444 66788855 456678899999999999999999974 479999999999999999999999986421 3345
Q ss_pred eEEEEE
Q 019733 85 KFLIQG 90 (336)
Q Consensus 85 KFLVqs 90 (336)
.+.|.+
T Consensus 99 ~l~v~~ 104 (122)
T 2ys4_A 99 RLIVCY 104 (122)
T ss_dssp BCEEEE
T ss_pred EEEEEE
Confidence 555544
No 8
>2e6j_A Hydin protein; PAPD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.78 E-value=7.4e-05 Score=59.48 Aligned_cols=70 Identities=13% Similarity=0.155 Sum_probs=58.8
Q ss_pred CCeEEeCCeeEEec-cCCCeeEEEEEEEcCCCCeEEEEEeeCCC---CcEEEeCCceeeCCCCeEEEEEEeccC
Q 019733 4 ELLDIQPLELKFTF-EVKKQSTCVIQLGNKSDQCVAFKVKTTSP---KKYCVRPNVSIIKPKAISDFTVTMQAQ 73 (336)
Q Consensus 4 ~LL~I~P~EL~F~~-p~~k~~s~~LtLtN~S~~~VAFKVKTTaP---~rY~VrPn~GiI~Pgesi~I~ITlqa~ 73 (336)
+.+.+++..|.|-. ..+...++.++|+|+++.++.|++..... ..|.+.|..|.|.||++..|.|++.+.
T Consensus 8 P~i~~~~~~ldFG~v~~g~~~~~~~~l~N~g~~p~~~~~~~~~~~~~~~f~v~p~~g~i~pg~~~~i~V~f~~~ 81 (112)
T 2e6j_A 8 PKIHFNFELLDIGKVFTGSAHCYEAILYNKGSIDALFNMTPPTSALGACFVFSPKEGIIEPSGVQAIQISFSSI 81 (112)
T ss_dssp CSEEESCSEEEEEEEESSCCEEEEEEEEECCSSCEEEEECCCSSHHHHHCEEESSEEEECTTBCCEEEEEECCC
T ss_pred CEEEECcccEecEeEEECCEEEEEEEEEECCcceEEEEEecCCccccCcEEEECCcCEECCCCEEEEEEEEECC
Confidence 56788888888854 45667889999999999999999964221 569999999999999999999999874
No 9
>3qbt_B Inositol polyphosphate 5-phosphatase OCRL-1; protein transport, vesicular trafficking, GTPase, LOWE syndr immunoglobulin fold, RAB8A, endocytosis; HET: GNP; 2.00A {Homo sapiens}
Probab=97.75 E-value=0.00019 Score=61.06 Aligned_cols=69 Identities=13% Similarity=0.194 Sum_probs=59.0
Q ss_pred CCeEEeCCeeEEec-cCCCeeEEEEEEEcCCCCeEEEEEeeC------CCCcEEEeCCceeeCCCCeEEEEEEecc
Q 019733 4 ELLDIQPLELKFTF-EVKKQSTCVIQLGNKSDQCVAFKVKTT------SPKKYCVRPNVSIIKPKAISDFTVTMQA 72 (336)
Q Consensus 4 ~LL~I~P~EL~F~~-p~~k~~s~~LtLtN~S~~~VAFKVKTT------aP~rY~VrPn~GiI~Pgesi~I~ITlqa 72 (336)
+-+.+++..|.|-. .++...+++|+|+|++.-+..|++... .+.-+.|.|..|.|.||+++.|.|++.-
T Consensus 25 P~i~v~~~~ldFG~v~~~~~~~~~l~I~Ntg~vpa~F~f~~~~~~~~~~~~wl~v~P~~G~L~Pge~~~I~v~~~v 100 (140)
T 3qbt_B 25 PSLELSRREFVFENVKFRQLQKEKFQISNNGQVPCHFSFIPKLNDSQYCKPWLRAEPFEGYLEPNETVDISLDVYV 100 (140)
T ss_dssp CCEEESCCEEEEEEECBTCCEEEEEEEEECSSSCEEEEEECCTTCSSSSCTTEEEESCEEEECTTCEEEEEEEECB
T ss_pred CceEeeeeeEEeeeceeeeeeeeEEEEEcCCccceEEEEecCCCchhhhhHhhhcCCcccccCCCCeeEEEEEEEE
Confidence 56788888999964 466778999999999999999998753 3456899999999999999999999874
No 10
>3qis_A Inositol polyphosphate 5-phosphatase OCRL-1; DENT disease, RAC1, RAB gtpases, APPL1, endocytic PATH golgi complex, hydrolase-protein binding complex; 2.30A {Homo sapiens} PDB: 2qv2_A
Probab=97.17 E-value=0.0017 Score=62.98 Aligned_cols=72 Identities=13% Similarity=0.176 Sum_probs=59.5
Q ss_pred CCCeEEeCCeeEEec-cCCCeeEEEEEEEcCCCCeEEEEEeeCC------CCcEEEeCCceeeCCCCeEEEEEEeccCc
Q 019733 3 EELLDIQPLELKFTF-EVKKQSTCVIQLGNKSDQCVAFKVKTTS------PKKYCVRPNVSIIKPKAISDFTVTMQAQR 74 (336)
Q Consensus 3 s~LL~I~P~EL~F~~-p~~k~~s~~LtLtN~S~~~VAFKVKTTa------P~rY~VrPn~GiI~Pgesi~I~ITlqa~~ 74 (336)
.+-+.|++.+|.|-. .++...+++|+|+|++.-++.|++.... +.-+.|.|..|+|.||+++.|.|++.-..
T Consensus 27 ~P~v~v~~~~idFg~v~~~~~~~~~l~i~N~g~~pa~f~f~~~~~~~~~~~~wl~v~p~~g~l~Pge~~~i~l~~~v~~ 105 (366)
T 3qis_A 27 LPSLELSRREFVFENVKFRQLQKEKFQISNNGQVPCHFSFIPKLNDSQYCKPWLRAEPFEGYLEPNETVDISLDVYVSK 105 (366)
T ss_dssp -CCEEESCSEEEEEEECBTCCEEEEEEEEECSSSCEEEEEECCTTCSSSSCTTEEEESCEEEECTTCEEEEEEEECBCT
T ss_pred CCeEEEecCeEEeeeeeeCCeEEEEEEEEecCCceEEEEEEeCCCCCCCCCCcEEEeCCccEECCCCEEEEEEEEEECH
Confidence 467889999999954 5677899999999999999999997542 22277999999999999999999986543
No 11
>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis}
Probab=95.49 E-value=0.046 Score=48.93 Aligned_cols=69 Identities=10% Similarity=0.208 Sum_probs=57.9
Q ss_pred CeEEeCCeeEEec-cCCCeeEEEEEEEcCCCCeEEEEEeeCCCCcEEEeCCceeeCCCCeEEEEEEeccCc
Q 019733 5 LLDIQPLELKFTF-EVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKAISDFTVTMQAQR 74 (336)
Q Consensus 5 LL~I~P~EL~F~~-p~~k~~s~~LtLtN~S~~~VAFKVKTTaP~rY~VrPn~GiI~Pgesi~I~ITlqa~~ 74 (336)
-|.+++..+.|.- ..+......++++|.++.++-++.-.. |..+.+++..+.|.||++..|.|++.+..
T Consensus 2 ~i~~~~~~idFg~v~~g~~~~~~~~i~N~g~~pl~i~~~~~-p~~~~~~~~~~~I~PG~~g~I~vt~~~~~ 71 (220)
T 2qsv_A 2 PLQVSNARLLFPISMPEDEGVVRLVVNNTDESDLQVAVVSL-PSFVSLDDRAFRLQAREPRELNLSLAVPR 71 (220)
T ss_dssp CEEESCSEEECCSBCTTCCCEEEEEEEECSSSCEEEEEEEC-CTTEECSCCEEEECSSSCEEEEEEECCCT
T ss_pred ceEEecCeeEcccccCCCcceEEEEEEeCCCCceEEEeccC-CCceEeeeCcceeCCCCceEEEEEEcchh
Confidence 3789999999965 334566789999999999999997543 78888899999999999999999998654
No 12
>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis}
Probab=94.97 E-value=0.11 Score=46.53 Aligned_cols=69 Identities=14% Similarity=0.206 Sum_probs=56.9
Q ss_pred CCeEEeCCeeEEeccCCCeeEEEEEEEcCCCCeEEE-EEeeCCCCcEEEeCCceeeCCCCeEEEEEEeccCc
Q 019733 4 ELLDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAF-KVKTTSPKKYCVRPNVSIIKPKAISDFTVTMQAQR 74 (336)
Q Consensus 4 ~LL~I~P~EL~F~~p~~k~~s~~LtLtN~S~~~VAF-KVKTTaP~rY~VrPn~GiI~Pgesi~I~ITlqa~~ 74 (336)
..+.++ ..+.|-.-.+....+.++|+|.++.++.+ +|++++ +...+.++.+.|.||++..|.|++.+..
T Consensus 118 ~~i~~~-~~~dfG~i~g~~~~~~f~i~N~G~~pL~I~~v~~sc-gct~~~~~~~~i~PGe~~~i~v~~~~~~ 187 (220)
T 2qsv_A 118 GVMELS-TYLDMGQLDGETTKAAIEIRNVGAGPLRLHSVTTRN-PALTAVPDRTEIKPGGSTLLRIAVDPQV 187 (220)
T ss_dssp CCEECC-CEEEEEECTTSCEEEEEEEEECSSSCEEEEEEEECS-TTEEEEESCSEECTTCEEEEEEEECHHH
T ss_pred CEEEEE-eEEeeeccCCCeEEEEEEEEECCCCCEEEEEEEeCC-CCEeeecCCccCCCCCEEEEEEEEecCC
Confidence 346777 77888532266778999999999999988 788765 7899999999999999999999998753
No 13
>3q48_A Chaperone CUPB2; IG fold, periplasmic chaperone; 2.50A {Pseudomonas aeruginosa}
Probab=86.05 E-value=4.2 Score=37.66 Aligned_cols=109 Identities=15% Similarity=0.239 Sum_probs=70.7
Q ss_pred eEEeCCeeEEeccCCCeeEEEEEEEcCCCCeEEEEEeeCCC----------CcEEEeCCceeeCCCCeEEEEEEeccCcC
Q 019733 6 LDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSP----------KKYCVRPNVSIIKPKAISDFTVTMQAQRV 75 (336)
Q Consensus 6 L~I~P~EL~F~~p~~k~~s~~LtLtN~S~~~VAFKVKTTaP----------~rY~VrPn~GiI~Pgesi~I~ITlqa~~~ 75 (336)
|.|.|..+.|... ....+|+|+|.++.++.-.+...+. .-|.|-|+.-.|+||+...|.|...+. .
T Consensus 30 v~i~~TRvIy~~~---~k~~sl~l~N~~~~P~LvQsWid~~~~~~~p~~~~~pfivtPPl~rl~pg~~q~lRI~~~~~-~ 105 (257)
T 3q48_A 30 LIAQGTRVVFPAS---EREVTLRVSNTSGTPVLAQAWIDDGRQDVPPEELQVPFSVTPAVTRVEPNGGAVLRIAYLKA-P 105 (257)
T ss_dssp -CCSCSEEEEETT---CSEEEEEEEECSSSCEEEEEEEESSCCSSCGGGGCCSEEEESSEEEECTTEEEEEEEEECCC-C
T ss_pred EEEcceEEEEeCC---CcEEEEEEEeCCCCeEEEEEEEEcCCCccCcccccCCEEEcCCEEEECCCCceEEEEEECCC-C
Confidence 5567778888764 2358999999999887777654321 239999999999999999999987654 2
Q ss_pred CCCCCCCCCeEEEEEEEcCCCCCcchhhHHhhcccCCCceeEEEEEEEEeCCC
Q 019733 76 APPDLQCKDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVILMSPP 128 (336)
Q Consensus 76 ~P~d~k~kDKFLVqs~~vp~g~~d~dl~~~iFkk~~k~~I~ekKLrV~fv~p~ 128 (336)
.|.|- .--|-+....+|..... + ...=......+|++-|-+..
T Consensus 106 LP~Dr--ESlf~lnv~eIPp~~~~-~-------~n~Lqiair~rIKLFyRP~~ 148 (257)
T 3q48_A 106 LPTDR--ESLFWLNILEVPPRDED-E-------NNALQFSFRSRFKLFFRPSQ 148 (257)
T ss_dssp CCSSS--CEEEEEEEEEECCC-----------------CCEEEEEEEEEECTT
T ss_pred CCCCc--eeEEEEEeeecCCCCCC-C-------CceEEEEEEEEEEEEEeccc
Confidence 44441 23466666777653211 0 01112346778888887643
No 14
>2co7_B SAFB chaperone, putative fimbriae assembly chaperone; pilus subunit, adhesion, strand complementation, pathogenesis, fibril protein; 1.8A {Salmonella typhimurium} SCOP: b.1.11.1 b.7.2.1 PDB: 2co6_B
Probab=85.70 E-value=5.7 Score=35.79 Aligned_cols=84 Identities=11% Similarity=0.173 Sum_probs=61.5
Q ss_pred eEEeCCeeEEeccCCCeeEEEEEEEcCCCCeEEEEEeeCC-----CCcEEEeCCceeeCCCCeEEEEEEeccCcCCCCCC
Q 019733 6 LDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTS-----PKKYCVRPNVSIIKPKAISDFTVTMQAQRVAPPDL 80 (336)
Q Consensus 6 L~I~P~EL~F~~p~~k~~s~~LtLtN~S~~~VAFKVKTTa-----P~rY~VrPn~GiI~Pgesi~I~ITlqa~~~~P~d~ 80 (336)
|.|.+..+.|.... ...+|+|+|.++.++.-.+..-+ ..-|.|-|+.-.|+||+...|.|.+.+. ..|.|-
T Consensus 14 v~i~~TRvIy~~~~---k~~sl~l~N~~~~p~LvQsWv~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~~~~-~lP~Dr 89 (221)
T 2co7_B 14 VKLGATRVIYHAGT---AGATLSVSNPQNYPILVQSSVKAADKSSPAPFLVMPPLFRLEANQQSQLRIVRTGG-DMPTDR 89 (221)
T ss_dssp CEESCSEEEEETTS---SCEEEEEECCSSSCEEEEEEEEETTSSSBCSEEEESSEEEECTTCEEEEEEEECCC-CCCSSS
T ss_pred EEEcceEEEEcCCC---CEEEEEEEcCCCCcEEEEEEEecCCCCccCCEEEeCCEEEECCCCceEEEEEECCC-CCCCCc
Confidence 56778888897643 36799999999988777665422 2359999999999999999999998762 345441
Q ss_pred CCCCeEEEEEEEcCC
Q 019733 81 QCKDKFLIQGIVVPF 95 (336)
Q Consensus 81 k~kDKFLVqs~~vp~ 95 (336)
..-|-+....+|.
T Consensus 90 --Eslf~lnv~eIPp 102 (221)
T 2co7_B 90 --ETLQWVCIKAVPP 102 (221)
T ss_dssp --CEEEEEEEEEECC
T ss_pred --eEEEEEEeecCCC
Confidence 2356666666665
No 15
>2xg5_A PAPD, chaperone protein PAPD; chaperone, chaperone-surface active protein complex; HET: EC2 EC5; 2.00A {Escherichia coli} PDB: 1pdk_A 2uy6_A 2uy7_A 2j2z_A 2xg4_A* 2w07_A* 3me0_A* 1n0l_A 2wmp_A 3dpa_A 2j7l_A 1qpp_A 1qpx_A
Probab=84.99 E-value=8.6 Score=34.55 Aligned_cols=108 Identities=14% Similarity=0.156 Sum_probs=71.7
Q ss_pred eEEeCCeeEEeccCCCeeEEEEEEEcCCCC-eEEEEEeeCC-------CCcEEEeCCceeeCCCCeEEEEEEeccC-cCC
Q 019733 6 LDIQPLELKFTFEVKKQSTCVIQLGNKSDQ-CVAFKVKTTS-------PKKYCVRPNVSIIKPKAISDFTVTMQAQ-RVA 76 (336)
Q Consensus 6 L~I~P~EL~F~~p~~k~~s~~LtLtN~S~~-~VAFKVKTTa-------P~rY~VrPn~GiI~Pgesi~I~ITlqa~-~~~ 76 (336)
|.|++..+.|.... ...+|+|+|.++. ++.-.+...+ ..-|.|-|+.-.|+||+...|.|.+.+. ...
T Consensus 2 v~l~~TRvIy~~~~---k~~sl~l~N~~~~~p~LvQsWi~~~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~~~~~~~l 78 (218)
T 2xg5_A 2 VSLDRTRAVFDGSE---KSMTLDISNDNKQLPYLAQAWIENENQEKIITGPVIATPPVQRLEPGAKSMVRLSTTPDISKL 78 (218)
T ss_dssp EEESCSEEEEETTS---SEEEEEEEECCSSSCEEEEEEEECTTSCEECSSSEEEECSEEEECTTCEEEEEEEECGGGGGS
T ss_pred cEeCceEEEEeCCC---CEEEEEEEcCCCCCcEEEEEEEecCCCCccccCCEEEcCCeEEECCCCceEEEEEecCCCCCC
Confidence 56777888897653 4679999999988 7777665432 2349999999999999999999988762 234
Q ss_pred CCCCCCCCeEEEEEEEcCCCCCcchhhHHhhcccCCCceeEEEEEEEEeCC
Q 019733 77 PPDLQCKDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVILMSP 127 (336)
Q Consensus 77 P~d~k~kDKFLVqs~~vp~g~~d~dl~~~iFkk~~k~~I~ekKLrV~fv~p 127 (336)
|.|- ..-|-+....+|... .+ .+. =......+|++-|-+.
T Consensus 79 P~Dr--ESlf~lnv~eIPp~~--~~------~n~-lqia~r~rIKlFyRP~ 118 (218)
T 2xg5_A 79 PQDR--ESLFYFNLREIPPRS--EK------ANV-LQIALQTKIKLFYRPA 118 (218)
T ss_dssp CSSS--CEEEEEEEEEECCCC--CC------TTE-EEEEEEEEEEEEEECG
T ss_pred CCCc--eEEEEEEeecCCCCC--CC------Cce-EEEEehheeeEEEcCc
Confidence 5441 334666666666421 11 000 0134567788777654
No 16
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=84.76 E-value=2.9 Score=35.54 Aligned_cols=51 Identities=18% Similarity=0.154 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHhhhhHHHHHhhhhhhh
Q 019733 265 LKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELMA 315 (336)
Q Consensus 265 ~~~~~d~~~l~~~l~~~~~kl~ea~~~i~kl~e~~r~~~~e~~~l~~e~~~ 315 (336)
..+.+.+..||++|..+.-|++++++.+.+|+++-..--++--+|+.||..
T Consensus 85 ~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~~ 135 (138)
T 3hnw_A 85 ENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETELND 135 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345566778999999999999999999999999988877778888888754
No 17
>1klf_A FIMC chaperone, chaperone protein FIMC; adhesin-chaperone complex, mannose-bound, chaperone/adhesin complex complex; HET: MAN; 2.79A {Escherichia coli} SCOP: b.1.11.1 b.7.2.1 PDB: 1kiu_A* 3rfz_C 1qun_A 1bf8_A 1ze3_C 3bwu_C 3jwn_C
Probab=81.92 E-value=11 Score=33.60 Aligned_cols=110 Identities=9% Similarity=0.160 Sum_probs=71.5
Q ss_pred eEEeCCeeEEeccCCCeeEEEEEEEcCCCC-eEEEEEeeCC-----CCcEEEeCCceeeCCCCeEEEEEEe-ccCcCCCC
Q 019733 6 LDIQPLELKFTFEVKKQSTCVIQLGNKSDQ-CVAFKVKTTS-----PKKYCVRPNVSIIKPKAISDFTVTM-QAQRVAPP 78 (336)
Q Consensus 6 L~I~P~EL~F~~p~~k~~s~~LtLtN~S~~-~VAFKVKTTa-----P~rY~VrPn~GiI~Pgesi~I~ITl-qa~~~~P~ 78 (336)
|.+++..+.|... ....+|+|+|.++. ++.-.+..-+ ..-|.|-|+.-.|+||+...|.|.. .+ ...|.
T Consensus 2 v~l~~TRvIy~~~---~k~~sl~l~N~~~~~p~LvQsWi~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~~~~-~~lP~ 77 (205)
T 1klf_A 2 VALGATRVIYPAG---QKQVQLAVTNNDENSTYLIQSWVENADGVKDGRFIVTPPLFAMKGKKENTLRILDATN-NQLPQ 77 (205)
T ss_dssp EEESCSEEEEETT---CSEEEEEEEECCSSCCEEEEEEEEETTSCCCSSEEEESSEEEECSSEEEEEEEEECSC-SCSCS
T ss_pred eEecceEEEEeCC---CcEEEEEEEcCCCCCcEEEEEEEecCCCCccCCEEEcCCeEEECCCCceEEEEEecCC-CCCCC
Confidence 5677788889765 34679999999987 7776654322 2359999999999999999999988 65 23454
Q ss_pred CCCCCCeEEEEEEEcCCCCCcchhhHHhhcccCC-CceeEEEEEEEEeCCC
Q 019733 79 DLQCKDKFLIQGIVVPFGTSDEDITSDMFAKDSG-KYVEEKKLRVILMSPP 128 (336)
Q Consensus 79 d~k~kDKFLVqs~~vp~g~~d~dl~~~iFkk~~k-~~I~ekKLrV~fv~p~ 128 (336)
|- ..-|-+....+|......+ .... ......+|++-|-+..
T Consensus 78 Dr--Eslf~lnv~eIPp~~~~~~-------~~n~lqia~r~riKlFyRP~~ 119 (205)
T 1klf_A 78 DR--ESLFWMNVKAIPSMDKSKL-------TENTLQLAIISRIKLYYRPAK 119 (205)
T ss_dssp SS--CEEEEEEEEEECCCCTTST-------TSCEEEEEEEEEEEEEEECTT
T ss_pred Cc--eEEEEEEeEecCCCCcccc-------CCceEEEEeeeeeeEEEcccc
Confidence 41 2356666666665211000 0000 1235677777776543
No 18
>4djm_A DRAB; chaperone, PILI; 2.52A {Escherichia coli}
Probab=79.32 E-value=12 Score=34.30 Aligned_cols=84 Identities=17% Similarity=0.184 Sum_probs=59.6
Q ss_pred eEEeCCeeEEeccCCCeeEEEEEEEcCCCCeEEEEEeeCC-----CCcEEEeCCceeeCCCCeEEEEEEeccCcCCCCCC
Q 019733 6 LDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTS-----PKKYCVRPNVSIIKPKAISDFTVTMQAQRVAPPDL 80 (336)
Q Consensus 6 L~I~P~EL~F~~p~~k~~s~~LtLtN~S~~~VAFKVKTTa-----P~rY~VrPn~GiI~Pgesi~I~ITlqa~~~~P~d~ 80 (336)
|.|.+..+.|.... ...+|+|+|.++.++.-.+..-+ ..-|.|.|+.-.|+||+...|.|.+... ..|.|-
T Consensus 24 v~l~~TRvIy~~~~---k~~sl~l~N~~~~P~LvQsWv~~~~~~~~~pfivtPPlfRlep~~~q~lRIi~~~~-~LP~DR 99 (239)
T 4djm_A 24 LHLGATRVVYNPAS---SGETLTVINDQDYPMLVQSEVLSEDQKSPAPFVVTPPLFRLDGQQSSRLRIVRTGG-EFPPDR 99 (239)
T ss_dssp CEESCSEEEECTTS---SCEEEEEEECSSSCEEEEEEEECTTSSSBCSEEEESSEEEECTTEEEEEEEEECSC-CCCSSS
T ss_pred EEEcceEEEEeCCC---CEEEEEEEeCCCCcEEEEEEEEcCCCCccCCEEEcCCeEEECCCCceEEEEEECCC-CCCCCc
Confidence 56788888887642 35799999999887666554321 2349999999999999999999987653 245431
Q ss_pred CCCCeEEEEEEEcCC
Q 019733 81 QCKDKFLIQGIVVPF 95 (336)
Q Consensus 81 k~kDKFLVqs~~vp~ 95 (336)
..-|-+....+|+
T Consensus 100 --ESlf~lnv~eIPp 112 (239)
T 4djm_A 100 --ESLQWICVKGIPP 112 (239)
T ss_dssp --CEEEEEEEEEECC
T ss_pred --eEEEEEEEEecCC
Confidence 2345566666664
No 19
>4ay0_A Chaperone protein CAF1M; amino acid motifs, bacterial capsules, bacterial proteins, gene expression regulation, molecular chaperones, binding; 1.52A {Yersinia pestis} PDB: 1p5v_A 1p5u_A 1z9s_A 2os7_A 3dos_A 3dpb_A 3dsn_A 4b0m_M 4az8_A 4ayf_A
Probab=78.98 E-value=31 Score=31.00 Aligned_cols=108 Identities=11% Similarity=0.207 Sum_probs=66.3
Q ss_pred eEEeCCeeEEeccCCCeeEEEEEEEcCCCCeEEEEEeeCC-------CCcEEEeCCceeeCCCCeEEEEEEeccCcCCCC
Q 019733 6 LDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTS-------PKKYCVRPNVSIIKPKAISDFTVTMQAQRVAPP 78 (336)
Q Consensus 6 L~I~P~EL~F~~p~~k~~s~~LtLtN~S~~~VAFKVKTTa-------P~rY~VrPn~GiI~Pgesi~I~ITlqa~~~~P~ 78 (336)
|.|.-..+.|... ....+|+|+|.++.++.-.....+ ..-|.|.|+.-.|+||+...|.|...+. ..|.
T Consensus 14 v~l~~TRvIy~~~---~k~~sl~l~N~~~~p~LvQswv~~~~~~~~~~~pFivtPPl~Rl~p~~~q~lRI~~~~~-~LP~ 89 (218)
T 4ay0_A 14 VTIGESRIIYPLD---AAGVMVSVKNTQDYPVLIQSRIYDENKEKESEDPFVVTPPLFRLDAKQQNSLRIAQAGG-VFPR 89 (218)
T ss_dssp EEESCCEEEEETT---CSCEEEEEECCSSSCEEEEEEEECTTSCCCSSCSEEEESSEEEECTTCEEEEEEEECSC-CCCS
T ss_pred EEECceEEEECCC---CcEEEEEEEcCCCCCEEEEEEEecCCCCccccCCEEECCCeEEeCCCCceEEEEEecCC-CCCc
Confidence 4555567888653 236789999999988766654321 1239999999999999999999988753 3454
Q ss_pred CCCCCCeEEEEEEEcCCCCCcchhhHHhhcccCCCceeEEEEEEEEeCC
Q 019733 79 DLQCKDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVILMSP 127 (336)
Q Consensus 79 d~k~kDKFLVqs~~vp~g~~d~dl~~~iFkk~~k~~I~ekKLrV~fv~p 127 (336)
| -.--|-+....+|+...+. ... =......+|++-|-+.
T Consensus 90 D--RESlf~lnv~eIPp~~~~~------~n~--lqia~r~rIKlFyRP~ 128 (218)
T 4ay0_A 90 D--KESLKWLCVKGIPPKDEDI------WVD--VQFAINNCIKLLVRPN 128 (218)
T ss_dssp S--SCEEEEEEEEEECC----------------------CEEEEEEECT
T ss_pred C--cEEEEEEEEEecCCCCccc------cce--eEEEEEEEEEEEEcCc
Confidence 4 1234777777777531110 000 1223456788777654
No 20
>1l4i_A SFAE protein; periplasmic chaperone, immunoglobulin fold; 2.20A {Escherichia coli} SCOP: b.1.11.1 b.7.2.1
Probab=78.73 E-value=17 Score=32.31 Aligned_cols=111 Identities=8% Similarity=0.177 Sum_probs=70.4
Q ss_pred eEEeCCeeEEeccCCCeeEEEEEEEcCCC-CeEEEEEeeCC-----CCcEEEeCCceeeCCCCeEEEEEE-eccCcCCCC
Q 019733 6 LDIQPLELKFTFEVKKQSTCVIQLGNKSD-QCVAFKVKTTS-----PKKYCVRPNVSIIKPKAISDFTVT-MQAQRVAPP 78 (336)
Q Consensus 6 L~I~P~EL~F~~p~~k~~s~~LtLtN~S~-~~VAFKVKTTa-----P~rY~VrPn~GiI~Pgesi~I~IT-lqa~~~~P~ 78 (336)
|.+++..+.|... ....+|+|+|.++ .++.-.+..-+ ..-|.|-|+.-.|+||+...|.|. ... ...|.
T Consensus 2 v~l~~TRvIy~~~---~k~~sl~l~N~~~~~p~LvQsWv~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~~~~-~~lP~ 77 (206)
T 1l4i_A 2 VALGATRVIYPEG---QKQVQLAVTNNDDKSSYLIQSWIENAEGKKDARFVITPPLFSMQGKKENTLRIIDATN-GQMPE 77 (206)
T ss_dssp EEESCSEEEEETT---CSEEEEEEEECCTTCEEEEEEEEEETTSCBCSSEEEESSEEEEESSEEEEEEEEECCT-TCSCS
T ss_pred eEeCceEEEEeCC---CcEEEEEEEeCCCCccEEEEEEEecCCCCccCCEEEcCCeEEECCCCceEEEEEecCC-CCCCC
Confidence 5677788889764 3467999999986 77776664422 234999999999999999999998 653 23454
Q ss_pred CCCCCCeEEEEEEEcCCCCCcchhhHHhhcccCCCceeEEEEEEEEeCCC
Q 019733 79 DLQCKDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVILMSPP 128 (336)
Q Consensus 79 d~k~kDKFLVqs~~vp~g~~d~dl~~~iFkk~~k~~I~ekKLrV~fv~p~ 128 (336)
|- ..-|-+....+|......+ . ...=......+|++-|-+..
T Consensus 78 Dr--Eslf~lnv~eIPp~~~~~~-~-----~n~lqia~r~riKlFyRP~~ 119 (206)
T 1l4i_A 78 DR--ESLFWVNVKAIPAMDKAKT-G-----ENYLQFAIVSRIKLLYRPQG 119 (206)
T ss_dssp SS--CEEEEEEEEEEECCC--------------CCCEEEEEEEEEEECTT
T ss_pred Cc--eEEEEEEeecCCCCccccc-C-----CceEEEEhhheeeEEEeccc
Confidence 42 2345555555554211000 0 01112356778888776653
No 21
>2r39_A FIXG-related protein; structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG, iron, iron-sulfur; 2.02A {Vibrio parahaemolyticus}
Probab=75.18 E-value=12 Score=30.03 Aligned_cols=52 Identities=12% Similarity=0.257 Sum_probs=39.8
Q ss_pred eeEEEEEEEcCCCCeEEEEEeeCCCCcEEEe-CCceeeCCCCeEEEEEEeccC
Q 019733 22 QSTCVIQLGNKSDQCVAFKVKTTSPKKYCVR-PNVSIIKPKAISDFTVTMQAQ 73 (336)
Q Consensus 22 ~~s~~LtLtN~S~~~VAFKVKTTaP~rY~Vr-Pn~GiI~Pgesi~I~ITlqa~ 73 (336)
.-..+|+|.|.+.+...|.++......+.+. +..=.|.||+...+.|.+...
T Consensus 32 ~N~Ytlki~Nkt~~~~~~~l~v~g~~~l~~~g~~~i~v~~g~~~~~~v~v~~~ 84 (118)
T 2r39_A 32 ENTYTLKVINKTQQVQEYNLDVKGLNDVSWYGKQTIQVEPGEVLNLPMSLGAD 84 (118)
T ss_dssp EEEEEEEEEECSSSCEEEEEEEESCSSCEEESCCEEEECTTCEEEEEEEEEEC
T ss_pred EEEEEEEEEECCCCCEEEEEEEeCCcccEEeCCCcEEECCCCEEEEEEEEEEC
Confidence 4568999999999999999988775446654 554578899988887776553
No 22
>1s1c_X RHO-associated, coiled-coil containing protein kinase 1; GTPase, RHO kinase, ROCK, signaling protein; HET: GNP; 2.60A {Homo sapiens} SCOP: h.1.27.1
Probab=74.04 E-value=8.6 Score=29.53 Aligned_cols=49 Identities=18% Similarity=0.212 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHhhhhHH--HHHhhhhh
Q 019733 265 LKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATRE--KDMLKHEL 313 (336)
Q Consensus 265 ~~~~~d~~~l~~~l~~~~~kl~ea~~~i~kl~e~~r~~~~e--~~~l~~e~ 313 (336)
..|++||++|.....-+-.+|+.++.-+.+++++...++.+ +.+|++|-
T Consensus 2 ~~L~k~i~~l~~E~eel~~klk~~~ee~~~~~eee~~~~~~~lek~L~~E~ 52 (71)
T 1s1c_X 2 SMLTKDIEILRRENEELTEKMKKAEEEYKLEKEEEISNLKAAFEKNINTER 52 (71)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999877664433 35566664
No 23
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=72.90 E-value=12 Score=30.26 Aligned_cols=53 Identities=28% Similarity=0.344 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHhhhhHHHHHhhhhhhhcc
Q 019733 265 LKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELMAPA 317 (336)
Q Consensus 265 ~~~~~d~~~l~~~l~~~~~kl~ea~~~i~kl~e~~r~~~~e~~~l~~e~~~~~ 317 (336)
..+...+..|.++++..+.++......+.+=+..|+..-+++..+.+||+-|.
T Consensus 8 e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLT 60 (97)
T 2eqb_B 8 NQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLT 60 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555556666666666665555555555556778888899999999998764
No 24
>1yew_A Particulate methane monooxygenase, B subunit; membrane protein, beta barrel, oxidoreductase; 2.80A {Methylococcus capsulatus} PDB: 3rgb_A
Probab=72.72 E-value=23 Score=34.94 Aligned_cols=71 Identities=10% Similarity=0.148 Sum_probs=50.9
Q ss_pred CCCeEEeCCeeEEeccCCCeeEEEEEEEcCCCCeEEEEEeeCCCCcEEE---------eC------------CceeeCCC
Q 019733 3 EELLDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCV---------RP------------NVSIIKPK 61 (336)
Q Consensus 3 s~LL~I~P~EL~F~~p~~k~~s~~LtLtN~S~~~VAFKVKTTaP~rY~V---------rP------------n~GiI~Pg 61 (336)
...+.+.-..-+|.- .++..+-+|+++|.++.+|...==+|+.-+|.- .| ...-|.||
T Consensus 247 ~~~V~~~v~~A~Y~v-pgR~l~~~~~VtN~g~~pvrlgeF~tA~vrFln~~~~~~~~~~P~~lla~~gL~vsd~~pI~PG 325 (382)
T 1yew_A 247 APTVSVKVEDATYRV-PGRAMRMKLTITNHGNSPIRLGEFYTASVRFLDSDVYKDTTGYPEDLLAEDGLSVSDNSPLAPG 325 (382)
T ss_dssp CCSEEEEEEEEEEES-SCSEEEEEEEEEECSSSCEEEEEEECSSCEEECTTTCCCCSCCCGGGEETTCEEESCCSCBCTT
T ss_pred CCceEEEeeccEEec-CCcEEEEEEEEEcCCCCceEeeeEEeccEEEeCCcccccCCCChHHhhccCCceeCCCCCcCCC
Confidence 344555555566665 467889999999999999998866666666632 12 12348999
Q ss_pred CeEEEEEEeccCc
Q 019733 62 AISDFTVTMQAQR 74 (336)
Q Consensus 62 esi~I~ITlqa~~ 74 (336)
++.+|.|+.|.-.
T Consensus 326 ETr~~~v~a~da~ 338 (382)
T 1yew_A 326 ETRTVDVTASDAA 338 (382)
T ss_dssp CEEEEEEEEECHH
T ss_pred ceeEEEEEeehHH
Confidence 9999999987654
No 25
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=71.95 E-value=14 Score=30.84 Aligned_cols=57 Identities=26% Similarity=0.334 Sum_probs=37.5
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHH----------HH----hhhhHHHHHhhhhhhhc
Q 019733 257 KPAKDILELKLAKDFEELKLKLNVMDSQLREAEHTIRKLME----------AR----KLATREKDMLKHELMAP 316 (336)
Q Consensus 257 ~~~~~~~~~~~~~d~~~l~~~l~~~~~kl~ea~~~i~kl~e----------~~----r~~~~e~~~l~~e~~~~ 316 (336)
...+|....+|..+|+.||..|..+ ..||...|..|+. +. ..+.-|-+.|++|+..+
T Consensus 10 ~d~rD~~Ie~Lkreie~lk~ele~l---~~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l 80 (120)
T 3i00_A 10 KDEKDHLIERLYREISGLKAQLENM---KTESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDEL 80 (120)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777888888888888877777 4577777777765 12 22233456677777754
No 26
>3rfr_A PMOB; membrane, oxidoreductase; 2.68A {Methylocystis SP} PDB: 3chx_A
Probab=71.94 E-value=18 Score=36.01 Aligned_cols=67 Identities=15% Similarity=0.205 Sum_probs=49.5
Q ss_pred CeEEeCCeeEEeccCCCeeEEEEEEEcCCCCeEEEEEeeCCCCcEE--------------------E-eCCceeeCCCCe
Q 019733 5 LLDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYC--------------------V-RPNVSIIKPKAI 63 (336)
Q Consensus 5 LL~I~P~EL~F~~p~~k~~s~~LtLtN~S~~~VAFKVKTTaP~rY~--------------------V-rPn~GiI~Pges 63 (336)
.+.+.-..-+|.- .++...-+|+++|.++++|-+.==+|+.-+|. + .|+ -|.||++
T Consensus 283 ~V~~~v~~A~Y~v-pgR~l~~~~~VtN~g~~pvrlgeF~tA~vrFlnp~v~~~~~~~p~~l~a~~GL~s~~--pI~PGET 359 (419)
T 3rfr_A 283 QVTTELNGGVYKV-PGRELTINVKVKNGTSQPVRLGEYTAAGLRFLNPTVFTQKPDFPDYLLADRGLSNDD--VIAPGES 359 (419)
T ss_dssp CCEEEEEEEEEES-SSSEEEEEEEEECCSSSCBEEEEEECSSCEEECTTTCSSCCCCCTTTEESCCCCCCC--CBCTTCE
T ss_pred ceEEEEeceEEec-CCcEEEEEEEEecCCCCceEEeeEEEccEEEeCcccccCCCCCchhhhhccCCCCCC--CcCCCcc
Confidence 3444445566665 46788999999999999998886666666654 1 223 5999999
Q ss_pred EEEEEEeccCc
Q 019733 64 SDFTVTMQAQR 74 (336)
Q Consensus 64 i~I~ITlqa~~ 74 (336)
.+|.|+.+.-.
T Consensus 360 rt~~V~a~da~ 370 (419)
T 3rfr_A 360 KEIVVKIQDAR 370 (419)
T ss_dssp EEEEEEEECHH
T ss_pred eEEEEEeehHH
Confidence 99999987644
No 27
>3gfu_C Chaperone protein FAEE; immunoglobulin like fold, chaperone, fimbrium, immunoglobulin domain, periplasm, plasmid, cell adhesion; 1.99A {Escherichia coli} PDB: 3gew_B 3f65_A 3f6i_A 3f6l_A
Probab=67.67 E-value=35 Score=30.93 Aligned_cols=106 Identities=13% Similarity=0.205 Sum_probs=66.8
Q ss_pred eEEeCCeeEEeccCCCeeEEEEEEEcCCCC-eEEEEEeeC--C----CCcEEEeCCceeeCCCCeEEEEEEeccCcCCCC
Q 019733 6 LDIQPLELKFTFEVKKQSTCVIQLGNKSDQ-CVAFKVKTT--S----PKKYCVRPNVSIIKPKAISDFTVTMQAQRVAPP 78 (336)
Q Consensus 6 L~I~P~EL~F~~p~~k~~s~~LtLtN~S~~-~VAFKVKTT--a----P~rY~VrPn~GiI~Pgesi~I~ITlqa~~~~P~ 78 (336)
+.++...+.|... ....+|+|+|.++. ++.-.+... . ..-|.|-|+.-.|+||+...|.|.+.+. ..|.
T Consensus 2 ~~l~~TRvIy~~~---~k~~sl~l~N~~~~~p~LvQsWid~~~~~~~~~pfivtPPlfRlep~~~q~lRIi~~~~-~LP~ 77 (224)
T 3gfu_C 2 LAVDQTRYIFRGD---KDALTITVTNNDKERTFGGQAWVDNIVEKDTRPTFVVTPSFFKVKPNGQQTLRIIMASD-HLPK 77 (224)
T ss_dssp EECSCSEEEEETT---SSCEEEEEEECCSSCCEEEEEEEEESSCCSCSCSEEEESSEEEECTTCEEEEEEEECSC-CCCS
T ss_pred ccccceEEEEeCC---CceEEEEEEeCCCCccEEEEEEEecCCCCcccCCEEEcCCeEEECCCCceEEEEEECCC-CCCC
Confidence 4456667888764 23579999999875 544443321 1 2249999999999999999999987653 2453
Q ss_pred CCCCCCeEEEEEEEcCCCCCcchhhHHhhcccCCCceeEEEEEEEEeCC
Q 019733 79 DLQCKDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVILMSP 127 (336)
Q Consensus 79 d~k~kDKFLVqs~~vp~g~~d~dl~~~iFkk~~k~~I~ekKLrV~fv~p 127 (336)
|- ..-|-+....+|... .. + .=......+|++-|-+.
T Consensus 78 DR--ESlf~lnv~eIPp~~-~~--------n-~Lqiair~rIKLFyRP~ 114 (224)
T 3gfu_C 78 DK--ESVYWLNLQDIPPAL-EG--------S-GIAVALRTKLKLFYRPK 114 (224)
T ss_dssp SS--CEEEEEEEEEECCCC-SS--------S-BCCEEEEEEEEEEEECG
T ss_pred Cc--eEEEEEEeecCCCCC-CC--------C-eEEEEEEEEeeEEEccc
Confidence 31 234556666666421 10 1 11235667788777654
No 28
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=65.03 E-value=12 Score=28.83 Aligned_cols=47 Identities=19% Similarity=0.106 Sum_probs=39.2
Q ss_pred HHHHHHHHHhHHHhhHHHHHHHHHHHHHHhhhhHHHHHhhhhhhhcc
Q 019733 271 FEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELMAPA 317 (336)
Q Consensus 271 ~~~l~~~l~~~~~kl~ea~~~i~kl~e~~r~~~~e~~~l~~e~~~~~ 317 (336)
-++|..+|..||.||--.+.+|..|++.=-.--++=|.|+..|..+.
T Consensus 9 ~~~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~ 55 (78)
T 3efg_A 9 DQELEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLL 55 (78)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788888888888888999999988888888899999988775
No 29
>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A {Bos taurus} SCOP: h.1.27.1
Probab=62.78 E-value=24 Score=27.05 Aligned_cols=47 Identities=19% Similarity=0.251 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHhh--hh--HHHHHhhhhh
Q 019733 267 LAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKL--AT--REKDMLKHEL 313 (336)
Q Consensus 267 ~~~d~~~l~~~l~~~~~kl~ea~~~i~kl~e~~r~--~~--~e~~~l~~e~ 313 (336)
+++||++|.....-|-.||++++.-+.+++++... ++ +=+.+|++|-
T Consensus 2 ~~k~v~~l~~E~eel~~klk~~~ee~~~~~eee~~~~~~k~~lek~L~~E~ 52 (71)
T 1uix_A 2 STSDVANLANEKEELNNKLKEAQEQLSRLKDEEISAAAIKAQFEKQLLTER 52 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999877665 22 2234566664
No 30
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=55.39 E-value=40 Score=28.42 Aligned_cols=45 Identities=20% Similarity=0.273 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHhhhhHHHHHhhhhh
Q 019733 269 KDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHEL 313 (336)
Q Consensus 269 ~d~~~l~~~l~~~~~kl~ea~~~i~kl~e~~r~~~~e~~~l~~e~ 313 (336)
+.+++|...+..++.++..-.+-++.++++-....+|...|+.|.
T Consensus 75 ~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~ 119 (138)
T 3hnw_A 75 KMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEI 119 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444333444444444444444455555555544
No 31
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=54.15 E-value=24 Score=34.45 Aligned_cols=52 Identities=19% Similarity=0.281 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHhhhhHHHHHhhhhhhhc
Q 019733 265 LKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELMAP 316 (336)
Q Consensus 265 ~~~~~d~~~l~~~l~~~~~kl~ea~~~i~kl~e~~r~~~~e~~~l~~e~~~~ 316 (336)
..+...+++|+.++..++.++++++.-+..|.+.-+...++|.+|-.+|.-+
T Consensus 6 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~el 57 (403)
T 4etp_A 6 AALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQEL 57 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4566777788888888888888888888888887777788888887777543
No 32
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=49.36 E-value=32 Score=27.41 Aligned_cols=38 Identities=13% Similarity=0.170 Sum_probs=29.1
Q ss_pred HhHHHhhHHHHHHHHHHHHHHhhhhHHHHHhhhhhhhc
Q 019733 279 NVMDSQLREAEHTIRKLMEARKLATREKDMLKHELMAP 316 (336)
Q Consensus 279 ~~~~~kl~ea~~~i~kl~e~~r~~~~e~~~l~~e~~~~ 316 (336)
..||.....-..-+.+|++|.....+|+|.+|+-+..+
T Consensus 51 ~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~~L 88 (90)
T 2wt7_B 51 HHLENEKTQLIQQVEQLKQEVSRLARERDAYKVKSEKL 88 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445555555678889999999999999999987654
No 33
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=47.98 E-value=47 Score=27.31 Aligned_cols=46 Identities=20% Similarity=0.273 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHhhhhHHHHHhhhhhh
Q 019733 269 KDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELM 314 (336)
Q Consensus 269 ~d~~~l~~~l~~~~~kl~ea~~~i~kl~e~~r~~~~e~~~l~~e~~ 314 (336)
+.+..+..++..|..+|...+....+|.+..+...+|+..|+..|.
T Consensus 13 ~E~~~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~ 58 (129)
T 2fxo_A 13 KEMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQ 58 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566677778888888888888888888888888899988877664
No 34
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=46.34 E-value=33 Score=42.22 Aligned_cols=53 Identities=25% Similarity=0.244 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHhhhhHHHHHhhhhhhhc
Q 019733 264 ELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELMAP 316 (336)
Q Consensus 264 ~~~~~~d~~~l~~~l~~~~~kl~ea~~~i~kl~e~~r~~~~e~~~l~~e~~~~ 316 (336)
+..+.++.+..+.+|+..+++|.+-+..|.+|+++-...++|++.|+.||...
T Consensus 2016 l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~ 2068 (3245)
T 3vkg_A 2016 VEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKV 2068 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556777777888888888888888888899999888899999999998753
No 35
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=46.33 E-value=34 Score=23.74 Aligned_cols=35 Identities=23% Similarity=0.385 Sum_probs=23.4
Q ss_pred HHhHHHhhHHHHHHHHHHHHHHhhhhHHHHHhhhh
Q 019733 278 LNVMDSQLREAEHTIRKLMEARKLATREKDMLKHE 312 (336)
Q Consensus 278 l~~~~~kl~ea~~~i~kl~e~~r~~~~e~~~l~~e 312 (336)
|+.||++-++-+....+|.++-++-.+|-.||.|=
T Consensus 5 l~eLE~r~k~le~~naeLEervstLq~EN~mLRqv 39 (42)
T 2oqq_A 5 LSELENRVKDLENKNSELEERLSTLQNENQMLRHI 39 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 45566666666666667766666667777777763
No 36
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=45.08 E-value=37 Score=27.01 Aligned_cols=29 Identities=24% Similarity=0.297 Sum_probs=18.5
Q ss_pred HHHHHHHhHHHhhHHHHHHHHHHHHHHhh
Q 019733 273 ELKLKLNVMDSQLREAEHTIRKLMEARKL 301 (336)
Q Consensus 273 ~l~~~l~~~~~kl~ea~~~i~kl~e~~r~ 301 (336)
+=|..+...+..|+||+..|.++.-|-|.
T Consensus 46 ~rk~~i~~ie~~ldEA~eLl~qMelE~r~ 74 (102)
T 2qyw_A 46 EKKKLVRDFDEKQQEANETLAEMEEELRY 74 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33556666667777777777776666444
No 37
>3fga_D Shugoshin-like 1; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens}
Probab=43.47 E-value=28 Score=24.71 Aligned_cols=28 Identities=29% Similarity=0.279 Sum_probs=22.2
Q ss_pred HHHHHHHhHHHhhHHHHHHHHHHHHHHh
Q 019733 273 ELKLKLNVMDSQLREAEHTIRKLMEARK 300 (336)
Q Consensus 273 ~l~~~l~~~~~kl~ea~~~i~kl~e~~r 300 (336)
.|-.-|.+=.+|.+||+.+|-+||.|.-
T Consensus 14 ~LalALe~Ek~Kvr~Aq~~ILqLkrE~q 41 (47)
T 3fga_D 14 MLVLALENEKSKVKEAQDIILQLRKECY 41 (47)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566777899999999999998754
No 38
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=42.68 E-value=33 Score=26.95 Aligned_cols=42 Identities=10% Similarity=0.038 Sum_probs=23.2
Q ss_pred HHHhHHHhhHHHHHHHHHHHHHHhhhhHHHHHhhhhhhhccc
Q 019733 277 KLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELMAPAI 318 (336)
Q Consensus 277 ~l~~~~~kl~ea~~~i~kl~e~~r~~~~e~~~l~~e~~~~~~ 318 (336)
+|..++.++++....|.+|+.+.+.--.+...|++.|.++..
T Consensus 4 ~~~~~~~~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l~~ 45 (112)
T 1l8d_A 4 LLEELETKKTTIEEERNEITQRIGELKNKIGDLKTAIEELKK 45 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344444444555555555555555555566666666666543
No 39
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=40.40 E-value=59 Score=32.04 Aligned_cols=19 Identities=16% Similarity=0.265 Sum_probs=7.5
Q ss_pred hHHHhhHHHHHHHHHHHHH
Q 019733 280 VMDSQLREAEHTIRKLMEA 298 (336)
Q Consensus 280 ~~~~kl~ea~~~i~kl~e~ 298 (336)
.|+.++++.+..+..|++|
T Consensus 548 ~le~~~~~~~~~~~~l~~e 566 (597)
T 3oja_B 548 ALEKQLDNKRAKQAELRQE 566 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhHHHHHHHH
Confidence 3333333344444444333
No 40
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=40.24 E-value=94 Score=21.78 Aligned_cols=37 Identities=22% Similarity=0.299 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHhh
Q 019733 265 LKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKL 301 (336)
Q Consensus 265 ~~~~~d~~~l~~~l~~~~~kl~ea~~~i~kl~e~~r~ 301 (336)
..+.+++.+++.+.+...+.++++..-+.++.+.=..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~ 44 (60)
T 3htk_A 8 KTLENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNT 44 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666666666666666555444
No 41
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=39.96 E-value=32 Score=26.81 Aligned_cols=48 Identities=23% Similarity=0.327 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHhhhhHHHHHhhhhhh
Q 019733 267 LAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELM 314 (336)
Q Consensus 267 ~~~d~~~l~~~l~~~~~kl~ea~~~i~kl~e~~r~~~~e~~~l~~e~~ 314 (336)
+....+++-.||-.++.++.+-+..|.-|..+=.-+-.+|+.++.|+-
T Consensus 4 l~~e~e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk 51 (79)
T 3cvf_A 4 MAAEREETQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVG 51 (79)
T ss_dssp ------CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455555555555555555555555554444455555555543
No 42
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=38.99 E-value=1.1e+02 Score=25.00 Aligned_cols=47 Identities=15% Similarity=0.069 Sum_probs=21.7
Q ss_pred CchhH-HHHHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHhhhhHHHHHhhh
Q 019733 258 PAKDI-LELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKH 311 (336)
Q Consensus 258 ~~~~~-~~~~~~~d~~~l~~~l~~~~~kl~ea~~~i~kl~e~~r~~~~e~~~l~~ 311 (336)
|+|.. ....+.=.|+=||-+|..|+- ....|+.+-|-..+|-+.+|+
T Consensus 18 nAQLDNEKsal~YqVdlLKD~LEe~eE-------~~aql~Re~~eK~re~e~~Kr 65 (103)
T 4h22_A 18 NAQLDNEKTNFMYQVDTLKDMLLELEE-------QLAESRRQYEEKNKEFEREKH 65 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 44443 344455555555555555544 444444444444444443333
No 43
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=38.94 E-value=42 Score=28.13 Aligned_cols=33 Identities=21% Similarity=0.435 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHh
Q 019733 268 AKDFEELKLKLNVMDSQLREAEHTIRKLMEARK 300 (336)
Q Consensus 268 ~~d~~~l~~~l~~~~~kl~ea~~~i~kl~e~~r 300 (336)
-+.+++|+-++..|..||++|...+.+||.+..
T Consensus 70 q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~ 102 (121)
T 3mq7_A 70 QKKVEELEGEITTLNHKLQDASAEVERLRRENQ 102 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Confidence 345889999999999999999999999988765
No 44
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=38.10 E-value=41 Score=26.72 Aligned_cols=44 Identities=18% Similarity=0.212 Sum_probs=23.6
Q ss_pred HHHHHhHHHhhHHHHHHHHHHHHHHhh---------------hhHHHHHhhhhhhhccc
Q 019733 275 KLKLNVMDSQLREAEHTIRKLMEARKL---------------ATREKDMLKHELMAPAI 318 (336)
Q Consensus 275 ~~~l~~~~~kl~ea~~~i~kl~e~~r~---------------~~~e~~~l~~e~~~~~~ 318 (336)
|..|...+..|+||+..|.++.-|-|. --++=++||.|+--+.+
T Consensus 37 k~~i~~ie~~l~EA~ell~qMelE~r~~p~~~R~~~~~klr~Yk~dL~~lk~elk~~~~ 95 (102)
T 1vcs_A 37 KQMVANVEKQLEEARELLEQMDLEVREIPPQSRGMYSNRMRSYKQEMGKLETDFKRSRI 95 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTHHHHHHHHHHHHHHHHHHHHHTHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444555555555555555555544333 22455677777765443
No 45
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=38.10 E-value=31 Score=22.02 Aligned_cols=24 Identities=29% Similarity=0.439 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHhHHHhhHHHH
Q 019733 266 KLAKDFEELKLKLNVMDSQLREAE 289 (336)
Q Consensus 266 ~~~~d~~~l~~~l~~~~~kl~ea~ 289 (336)
.|.+.+--|.|||..||.||+.-|
T Consensus 5 alekkcaalesklqalekkleale 28 (31)
T 3ljm_A 5 ALEKKCAALESKLQALEKKLEALE 28 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666677777777777776544
No 46
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=37.72 E-value=48 Score=23.69 Aligned_cols=28 Identities=25% Similarity=0.332 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHhHHHhhHHHHHHHHHHH
Q 019733 269 KDFEELKLKLNVMDSQLREAEHTIRKLM 296 (336)
Q Consensus 269 ~d~~~l~~~l~~~~~kl~ea~~~i~kl~ 296 (336)
-|++.||.+++.|..|..+-...+..|+
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~ 46 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLK 46 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444443
No 47
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=37.50 E-value=45 Score=29.40 Aligned_cols=59 Identities=15% Similarity=0.204 Sum_probs=49.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHhhhhHHHHHhhhhhhhcc
Q 019733 259 AKDILELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELMAPA 317 (336)
Q Consensus 259 ~~~~~~~~~~~d~~~l~~~l~~~~~kl~ea~~~i~kl~e~~r~~~~e~~~l~~e~~~~~ 317 (336)
++.+....+..-.+.|+++|..|...-+.-+..+....++.|.--|+...||=||.-+.
T Consensus 86 ~~~~E~~~l~~N~e~LksRL~~l~~sk~~L~e~L~~q~~~~relERemnsLKPeL~qL~ 144 (170)
T 3l4q_C 86 GNEKEMQRILLNSERLKSRIAEIHESRTKLEQELRAQASDNREIDKRMNSLKPDLMQLR 144 (170)
T ss_dssp CCSSSTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 34445566888899999999999988888888888899999999999999999988765
No 48
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=36.08 E-value=1e+02 Score=25.28 Aligned_cols=45 Identities=20% Similarity=0.193 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHhhhhHHHHHhhh
Q 019733 264 ELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKH 311 (336)
Q Consensus 264 ~~~~~~d~~~l~~~l~~~~~kl~ea~~~i~kl~e~~r~~~~e~~~l~~ 311 (336)
...|.-+++++|.|+.... .||-++|..|..+-.....+++.|+.
T Consensus 12 ~~~L~~E~e~~k~K~~~~~---~e~~~~~~~Lq~El~~lr~~~~~l~~ 56 (111)
T 2v66_B 12 NQRLKYEVEALKEKLEHQY---AQSYKQVSVLEDDLSQTRAIKEQLHK 56 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777776543 35556677777666666666666653
No 49
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=35.56 E-value=1.3e+02 Score=24.31 Aligned_cols=54 Identities=26% Similarity=0.213 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHhhhhH-------HHHHhhhhhhhc
Q 019733 263 LELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATR-------EKDMLKHELMAP 316 (336)
Q Consensus 263 ~~~~~~~d~~~l~~~l~~~~~kl~ea~~~i~kl~e~~r~~~~-------e~~~l~~e~~~~ 316 (336)
+..++..+++.+|.|...--++-..+|..|..||..-=.++- .-+.|+.||.|+
T Consensus 42 eldn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~lD~~~l~r~dLE~~iesL~eEl~FL 102 (119)
T 3ol1_A 42 ERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFL 102 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566677777777776666667788888888764322222 236677888775
No 50
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=35.49 E-value=86 Score=22.49 Aligned_cols=36 Identities=8% Similarity=0.039 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHH
Q 019733 263 LELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEA 298 (336)
Q Consensus 263 ~~~~~~~d~~~l~~~l~~~~~kl~ea~~~i~kl~e~ 298 (336)
+.-+|..||+.|..|.+.|.+....+...|..-.+|
T Consensus 5 ki~~Lss~V~~L~~kVdqLssdV~al~~~v~~ak~e 40 (52)
T 1jcd_A 5 KADQASSDAQTANAKADQASNDANAARSDAQAAKDD 40 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346788899999999999988777777666655544
No 51
>3n7n_E Monopolin complex subunit LRS4; meiosis, rDNA, replication; 3.90A {Saccharomyces cerevisiae}
Probab=34.51 E-value=8.3 Score=31.14 Aligned_cols=34 Identities=18% Similarity=0.131 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHH-----------HHHhHHHhhHHHHHHHHHHH
Q 019733 263 LELKLAKDFEELKL-----------KLNVMDSQLREAEHTIRKLM 296 (336)
Q Consensus 263 ~~~~~~~d~~~l~~-----------~l~~~~~kl~ea~~~i~kl~ 296 (336)
+..+|+.|+|.++. .-+.||+||+-+.++|..|+
T Consensus 51 Qv~qLt~~lQ~~~~Ene~Lke~qKtqkal~ESKL~~~kk~ie~l~ 95 (95)
T 3n7n_E 51 QIAQLNKQLQLSFQENEKLLSVQKNQKALYQSKLSSKDAFIDDLK 95 (95)
T ss_dssp ---------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34667777776654 45678999999999998763
No 52
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=34.44 E-value=63 Score=30.97 Aligned_cols=30 Identities=10% Similarity=0.152 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHhHHHhhHHHHHHHHHHHH
Q 019733 268 AKDFEELKLKLNVMDSQLREAEHTIRKLME 297 (336)
Q Consensus 268 ~~d~~~l~~~l~~~~~kl~ea~~~i~kl~e 297 (336)
...|+.|+..|..+++|+.+-+..|..|++
T Consensus 25 ~~~i~~L~~~l~~~~~~i~~l~~~i~~l~~ 54 (323)
T 1lwu_C 25 DAQIQELSEMWRVNQQFVTRLQQQLVDIRQ 54 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555544
No 53
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=34.26 E-value=84 Score=27.21 Aligned_cols=26 Identities=35% Similarity=0.293 Sum_probs=19.0
Q ss_pred HHHHHHHHhhhhHHHHHhhhhhhhcc
Q 019733 292 IRKLMEARKLATREKDMLKHELMAPA 317 (336)
Q Consensus 292 i~kl~e~~r~~~~e~~~l~~e~~~~~ 317 (336)
+.+=+..|+..-++++.+.+||+-|.
T Consensus 67 l~~E~~~R~~aE~~~~~ie~ElEeLT 92 (154)
T 2ocy_A 67 IAKENELRTKAEEEADKLNKEVEDLT 92 (154)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33335557777889999999998764
No 54
>2xze_Q Charged multivesicular BODY protein 3; hydrolase-protein transport complex; 1.75A {Homo sapiens}
Probab=33.90 E-value=19 Score=24.82 Aligned_cols=16 Identities=19% Similarity=0.414 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHhHHH
Q 019733 268 AKDFEELKLKLNVMDS 283 (336)
Q Consensus 268 ~~d~~~l~~~l~~~~~ 283 (336)
.+||++|+++|+.|.|
T Consensus 25 Eedi~~MqsRLaALRS 40 (40)
T 2xze_Q 25 EEALEAMQSRLATLRS 40 (40)
T ss_dssp HHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhcC
Confidence 4689999999998864
No 55
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=33.39 E-value=92 Score=22.23 Aligned_cols=34 Identities=21% Similarity=0.281 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHH
Q 019733 265 LKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEA 298 (336)
Q Consensus 265 ~~~~~d~~~l~~~l~~~~~kl~ea~~~i~kl~e~ 298 (336)
..+..++..|-.+=.-|..-|++|..-|.+|+++
T Consensus 12 ~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkee 45 (51)
T 3m91_A 12 HQLEARIDSLAARNSKLMETLKEARQQLLALREE 45 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555677777777777777765
No 56
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=33.35 E-value=1.2e+02 Score=27.25 Aligned_cols=24 Identities=13% Similarity=0.090 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHhHHHhhHHH
Q 019733 265 LKLAKDFEELKLKLNVMDSQLREA 288 (336)
Q Consensus 265 ~~~~~d~~~l~~~l~~~~~kl~ea 288 (336)
..+.++++.++.+++.++.++.++
T Consensus 93 ~aL~kEie~~~~~i~~lE~eile~ 116 (256)
T 3na7_A 93 RSLNIEEDIAKERSNQANREIENL 116 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445554444444444444433
No 57
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=32.85 E-value=80 Score=28.61 Aligned_cols=43 Identities=19% Similarity=0.375 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHhHHHhhHHHHHHHHHHHHH----HhhhhHHHHHhhh
Q 019733 269 KDFEELKLKLNVMDSQLREAEHTIRKLMEA----RKLATREKDMLKH 311 (336)
Q Consensus 269 ~d~~~l~~~l~~~~~kl~ea~~~i~kl~e~----~r~~~~e~~~l~~ 311 (336)
.+++.|+.+|..|+.++.+......+|.-+ ||++.+||+.+..
T Consensus 59 ~e~~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~RkR~~rE~e~~~~ 105 (213)
T 4ani_A 59 EELAAAKAQIAELEAKLSEMEHRYLRLYADFENFRRRTRQEMEAAEK 105 (213)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555666666555555555554443 5666788877654
No 58
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=32.46 E-value=31 Score=32.23 Aligned_cols=49 Identities=22% Similarity=0.325 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHhhhhHHHHHhhhhhhhcccccccCC
Q 019733 269 KDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELMAPAITTLPFG 324 (336)
Q Consensus 269 ~d~~~l~~~l~~~~~kl~ea~~~i~kl~e~~r~~~~e~~~l~~e~~~~~~~~~~~~ 324 (336)
.++.+|+..+..|.+ ...+|.++.+..-+|=.+||.|+.-+.-.-+-||
T Consensus 54 ~~l~eL~~ql~~L~a-------rNe~L~~~Lk~ar~El~~LkeElerL~sPPL~iG 102 (251)
T 3m9b_A 54 RDIHQLEARIDSLAA-------RNSKLMETLKEARQQLLALREEVDRLGQPPSGYG 102 (251)
T ss_dssp HHHHHHHHHHHHHTT-------THHHHHHHHHHHHHHHHHHHHHHHHHHSCCEEEE
T ss_pred hHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEE
Confidence 345555555555555 4445666666666667777788776654444444
No 59
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=32.29 E-value=90 Score=30.68 Aligned_cols=30 Identities=17% Similarity=0.088 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHhHHHhhHHHHHHHHHHH
Q 019733 267 LAKDFEELKLKLNVMDSQLREAEHTIRKLM 296 (336)
Q Consensus 267 ~~~d~~~l~~~l~~~~~kl~ea~~~i~kl~ 296 (336)
+.+.++.++.+.+.++.++++.++.+.+++
T Consensus 507 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 536 (597)
T 3oja_B 507 LNKVFTHLKERQAFKLRETQARRTEADAKQ 536 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHhhhhhh
Confidence 444555555555555555555555553333
No 60
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=31.94 E-value=89 Score=25.84 Aligned_cols=36 Identities=14% Similarity=0.230 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHhh
Q 019733 266 KLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKL 301 (336)
Q Consensus 266 ~~~~d~~~l~~~l~~~~~kl~ea~~~i~kl~e~~r~ 301 (336)
.-..=|..|+.+++.|++.|.+..+...+.+.+...
T Consensus 37 E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~ 72 (120)
T 3i00_A 37 ESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEF 72 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344667889999999999999999887666655543
No 61
>3zy7_A AP-1 complex subunit gamma-1; endocytosis, protein design, computational design; 1.09A {Mus musculus} PDB: 2a7b_A 1gyv_A 1gyw_A
Probab=31.84 E-value=73 Score=25.91 Aligned_cols=69 Identities=12% Similarity=0.137 Sum_probs=44.2
Q ss_pred eeEEEEEEEcCCCCe-EEEEEeeCCCCcEEEe--CCce-eeCC--CCeEEEEEEeccCcCCCCCCCCCCeEEEEEEEcC
Q 019733 22 QSTCVIQLGNKSDQC-VAFKVKTTSPKKYCVR--PNVS-IIKP--KAISDFTVTMQAQRVAPPDLQCKDKFLIQGIVVP 94 (336)
Q Consensus 22 ~~s~~LtLtN~S~~~-VAFKVKTTaP~rY~Vr--Pn~G-iI~P--gesi~I~ITlqa~~~~P~d~k~kDKFLVqs~~vp 94 (336)
...-.++.+|.+..+ =-|.+..-.|+-|.++ |..| .|.| +..++=.+.+.... ....+=|+.|.|..-.
T Consensus 30 ~~~i~~~~~N~s~~~it~f~fqaAVPKs~kL~L~p~Sg~~l~p~~~~~itQ~l~i~n~~----~~~lklR~klsY~~~g 104 (122)
T 3zy7_A 30 VTVITIQASNSTELDMTDFVFQAAVPKTFQLQLLSPSSSVVPAFNTGTITQVIKVLNPQ----KQQLRMRIKLTFNWNG 104 (122)
T ss_dssp EEEEEEEEEECSSSCBEEEEEEEECCTTSEEEECCCSCSCBCGGGSCCEEEEEEEECTT----CCCCCEEEEEEEEETT
T ss_pred eEEEEEEEEECCCCccccEEEEEEcCcccEEEecCCCCCccCCCCCCCEEEEEEEECCC----CCCEEEEEEEEEEECC
Confidence 355677888988654 4577777778877665 7776 6888 66555555544321 2245667777776544
No 62
>3hn9_A Lamin-B1; structural genomics, structural genomics consortium, SGC, acetylation, chromosomal rearrangement, coiled coil, intermediate filament; 2.00A {Homo sapiens} PDB: 3umn_A 2kpw_A
Probab=31.36 E-value=58 Score=26.79 Aligned_cols=41 Identities=17% Similarity=0.186 Sum_probs=29.0
Q ss_pred EEEEEEcCCCCeEE---EEEeeCCCC---cEEEeCCceeeCCCCeEEE
Q 019733 25 CVIQLGNKSDQCVA---FKVKTTSPK---KYCVRPNVSIIKPKAISDF 66 (336)
Q Consensus 25 ~~LtLtN~S~~~VA---FKVKTTaP~---rY~VrPn~GiI~Pgesi~I 66 (336)
..++|.|.+++.+. |+++-...+ .|.. |..=+|+||++++|
T Consensus 25 ~fV~L~N~s~~~~~L~gW~l~r~v~~~~~~y~F-p~~~~L~pg~~vtV 71 (123)
T 3hn9_A 25 KFIRLKNTSEQDQPMGGWEMIRKIGDTSVSYKY-TSRYVLKAGQTVTI 71 (123)
T ss_dssp SEEEEEECSSSCEECTTCEEEEEETTEEEEEEC-CTTCEECTTCEEEE
T ss_pred CEEEEEECCCCceecCCcEEEEEeCCCceEEEc-CCCcEECCCCEEEE
Confidence 47899999987665 777654432 3655 55558999999765
No 63
>2huh_A Putative DNA mismatch repair protein; structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.54A {Bacteroides thetaiotaomicron} SCOP: b.7.5.1
Probab=31.09 E-value=81 Score=27.16 Aligned_cols=65 Identities=15% Similarity=0.153 Sum_probs=50.9
Q ss_pred EEEEEEEcCCCCeEEEEEeeCCCCcEEEeCCceeeCCCCeEEEE-EEeccCcCCCCCCCCCCeEEEEEEEcCCC
Q 019733 24 TCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKAISDFT-VTMQAQRVAPPDLQCKDKFLIQGIVVPFG 96 (336)
Q Consensus 24 s~~LtLtN~S~~~VAFKVKTTaP~rY~VrPn~GiI~Pgesi~I~-ITlqa~~~~P~d~k~kDKFLVqs~~vp~g 96 (336)
.-.+-|.|.|+..+.|-.-+...+.|.++ ..|.|+|+..+.|. +.+... ..--+|.||.+..-.+
T Consensus 29 ~fe~YlVNdSNy~l~f~y~~~~~~~w~l~-~~G~iePntk~~ieef~~~el-------n~~~~~~vQ~layK~~ 94 (147)
T 2huh_A 29 PFEAYLVNDSNYYLYYTYLSAEGKAWNNR-SHGLVEPNTKLLLEEFTKDVL-------NEMERVAVQLIAFKDG 94 (147)
T ss_dssp CEEEEEEECSSSEEEEEEEEEETTEEEEE-EEEEECTTEEEEEEEECGGGG-------GGCSSEEEEEEEECSS
T ss_pred ceEEEEEeCCCcEEEEEEEEeeCCeEEEE-EeeEECCCcEEEEEeeChhHh-------cCCceEEEEEEEEcCC
Confidence 45778999999999999988887788776 78999999999886 444432 2356788888888653
No 64
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=31.03 E-value=1.7e+02 Score=23.05 Aligned_cols=33 Identities=18% Similarity=0.244 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHH
Q 019733 264 ELKLAKDFEELKLKLNVMDSQLREAEHTIRKLM 296 (336)
Q Consensus 264 ~~~~~~d~~~l~~~l~~~~~kl~ea~~~i~kl~ 296 (336)
...+..+|..|..|+..++..|+.++..+....
T Consensus 39 ~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~ 71 (101)
T 3u1c_A 39 SKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSE 71 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667788888888888888877766554433
No 65
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=30.90 E-value=54 Score=25.04 Aligned_cols=32 Identities=28% Similarity=0.335 Sum_probs=22.3
Q ss_pred hHHHHHHHHHHHHHHhhhhHHHHHhhhhhhhc
Q 019733 285 LREAEHTIRKLMEARKLATREKDMLKHELMAP 316 (336)
Q Consensus 285 l~ea~~~i~kl~e~~r~~~~e~~~l~~e~~~~ 316 (336)
|..|-.-|..|.++.+.-.+|++.|+.|...+
T Consensus 42 L~kA~~yI~~L~~~~~~l~~e~~~L~~e~~~L 73 (80)
T 1nlw_A 42 LTKAKLHIKKLEDSDRKAVHQIDQLQREQRHL 73 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55677777777777777777777777665543
No 66
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=30.66 E-value=1.1e+02 Score=23.99 Aligned_cols=29 Identities=34% Similarity=0.406 Sum_probs=16.8
Q ss_pred HHHHHHHHHHhHHHhhHHHHHHHHHHHHH
Q 019733 270 DFEELKLKLNVMDSQLREAEHTIRKLMEA 298 (336)
Q Consensus 270 d~~~l~~~l~~~~~kl~ea~~~i~kl~e~ 298 (336)
.+...|+-+-++++||+||+.-...|-++
T Consensus 32 ELs~vr~~ni~~eskL~eae~rn~eL~~e 60 (81)
T 1wt6_A 32 EMEAIRTDNQNFASQLREAEARNRDLEAH 60 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555556666666766666666443
No 67
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=29.57 E-value=21 Score=23.82 Aligned_cols=28 Identities=18% Similarity=0.339 Sum_probs=22.4
Q ss_pred HHHHHHHHHHhHHHhhHHHHHHHHHHHH
Q 019733 270 DFEELKLKLNVMDSQLREAEHTIRKLME 297 (336)
Q Consensus 270 d~~~l~~~l~~~~~kl~ea~~~i~kl~e 297 (336)
-++.+|.|+..|..++++|+.-+..|.+
T Consensus 5 ~i~avKkKiq~lq~q~d~aee~~~~~~~ 32 (37)
T 3azd_A 5 SLEAVRRKIRSLQEQNYHLENEVARLKK 32 (37)
T ss_dssp -CHHHHHHHHHHHHHTTTTHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999988887776654
No 68
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=29.20 E-value=2.2e+02 Score=23.21 Aligned_cols=55 Identities=20% Similarity=0.123 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhhHHHHHHHH-------HHHHH---HhhhhHHHHHhhhhhhhcc
Q 019733 263 LELKLAKDFEELKLKLNVMDSQLREAEHTIR-------KLMEA---RKLATREKDMLKHELMAPA 317 (336)
Q Consensus 263 ~~~~~~~d~~~l~~~l~~~~~kl~ea~~~i~-------kl~e~---~r~~~~e~~~l~~e~~~~~ 317 (336)
+..-|-+.++++.--++.+.-+++|--+-+. .|..+ -|..++|||.|=+|=+.-|
T Consensus 31 qVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~qRD~LI~E~~~~~ 95 (103)
T 4h22_A 31 QVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALKQREEMLEPKLAAA 95 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCC-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444556666666666666655555433333 33322 2345667776666655443
No 69
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=29.15 E-value=1.6e+02 Score=22.71 Aligned_cols=54 Identities=26% Similarity=0.206 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHhhhhHH-------HHHhhhhhhhc
Q 019733 263 LELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATRE-------KDMLKHELMAP 316 (336)
Q Consensus 263 ~~~~~~~d~~~l~~~l~~~~~kl~ea~~~i~kl~e~~r~~~~e-------~~~l~~e~~~~ 316 (336)
+..++..+++.+|.|...=-++-..||.-|.-||..-=.++-- =+.|+.|+.|+
T Consensus 22 e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~fL 82 (86)
T 3swk_A 22 ERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFL 82 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667777777777766666677888888887653333222 35677887775
No 70
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=29.12 E-value=1.1e+02 Score=33.58 Aligned_cols=27 Identities=19% Similarity=0.236 Sum_probs=12.0
Q ss_pred hHHHHHHHHHHHHHHhhhhHHHHHhhh
Q 019733 285 LREAEHTIRKLMEARKLATREKDMLKH 311 (336)
Q Consensus 285 l~ea~~~i~kl~e~~r~~~~e~~~l~~ 311 (336)
+.+.+..|.+|+++-.....|++.|++
T Consensus 986 v~~L~~e~~~l~~~~~~~~ke~~~lee 1012 (1080)
T 2dfs_A 986 VLSLQEEIAKLRKELHQTQTEKKTIEE 1012 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444443
No 71
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=29.01 E-value=1.8e+02 Score=23.68 Aligned_cols=50 Identities=22% Similarity=0.270 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHhhhhHHHHHhhhhhhhc
Q 019733 267 LAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELMAP 316 (336)
Q Consensus 267 ~~~d~~~l~~~l~~~~~kl~ea~~~i~kl~e~~r~~~~e~~~l~~e~~~~ 316 (336)
|...-.+|-.+|..|.+.|++-+.....|..+.|-.-++-+.|+..+.-+
T Consensus 74 L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~ 123 (129)
T 2fxo_A 74 LIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDL 123 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334456667777777777777778888877777777777777766543
No 72
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=28.64 E-value=1.5e+02 Score=23.13 Aligned_cols=39 Identities=21% Similarity=0.267 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHhh
Q 019733 263 LELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKL 301 (336)
Q Consensus 263 ~~~~~~~d~~~l~~~l~~~~~kl~ea~~~i~kl~e~~r~ 301 (336)
.+..+..+..++.+||.--++++++-..-|.+|+++-+-
T Consensus 32 ELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~ee 70 (81)
T 1wt6_A 32 EMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMEL 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446777888999999999999999998889998887554
No 73
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=28.38 E-value=2e+02 Score=22.43 Aligned_cols=32 Identities=13% Similarity=0.274 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHH
Q 019733 265 LKLAKDFEELKLKLNVMDSQLREAEHTIRKLM 296 (336)
Q Consensus 265 ~~~~~d~~~l~~~l~~~~~kl~ea~~~i~kl~ 296 (336)
..+..++..|+.|+..++..++.++..+....
T Consensus 40 ~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~ 71 (101)
T 3u59_A 40 KQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQ 71 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788888888888888777666555444
No 74
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=28.13 E-value=1.2e+02 Score=29.49 Aligned_cols=59 Identities=12% Similarity=0.232 Sum_probs=47.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHhhhhHHHHHhhhhhhhccc
Q 019733 260 KDILELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELMAPAI 318 (336)
Q Consensus 260 ~~~~~~~~~~d~~~l~~~l~~~~~kl~ea~~~i~kl~e~~r~~~~e~~~l~~e~~~~~~ 318 (336)
+.+....+..-.+.||++|..+...-+.-+..+..-.++-|..-|+-..||=||+-+.-
T Consensus 196 ~~~e~~~~~~n~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~lkp~l~ql~k 254 (373)
T 3hhm_B 196 NEKEIQRIMHNYDKLKSRISEIIDSRRRLEEDLKKQAAEYREIDKRMNSIKPDLIQLRK 254 (373)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHH
Confidence 44456778888999999999998887777778888888888888888888888876653
No 75
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=27.90 E-value=58 Score=27.74 Aligned_cols=47 Identities=26% Similarity=0.441 Sum_probs=27.9
Q ss_pred HHHHHHHHHhHHHhhHHHHHHHHHHHH-------HHhhhhHHHHHhhhhhhhcc
Q 019733 271 FEELKLKLNVMDSQLREAEHTIRKLME-------ARKLATREKDMLKHELMAPA 317 (336)
Q Consensus 271 ~~~l~~~l~~~~~kl~ea~~~i~kl~e-------~~r~~~~e~~~l~~e~~~~~ 317 (336)
.+.++.+|+.+.+.|.-.+..+.+|++ .|+..-.++..+.+||+-|.
T Consensus 27 le~l~~~l~~l~~~l~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LT 80 (135)
T 2e7s_A 27 YNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLT 80 (135)
T ss_dssp HHHHHHHHHHHHHHTTTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444433333334444444444 67788889999999998764
No 76
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=27.40 E-value=1.1e+02 Score=23.24 Aligned_cols=38 Identities=16% Similarity=0.337 Sum_probs=15.6
Q ss_pred HHHHhHHHhhHHHHHHHHHHHHHHhhhhHHHHHhhhhh
Q 019733 276 LKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHEL 313 (336)
Q Consensus 276 ~~l~~~~~kl~ea~~~i~kl~e~~r~~~~e~~~l~~e~ 313 (336)
.||-.++.++.+-|..|.-|..+=.-+-.+++.++.|+
T Consensus 7 ~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~El 44 (72)
T 3cve_A 7 MKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNL 44 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444433333333444444443
No 77
>2xzz_A Protein-glutamine gamma-glutamyltransferase K; 2.30A {Homo sapiens}
Probab=26.87 E-value=1.8e+02 Score=22.97 Aligned_cols=55 Identities=15% Similarity=0.153 Sum_probs=40.7
Q ss_pred CCCeeEEEEEEEcCCC---CeEEEEEeeCCCCcEEEeCCceeeCCCCeEEEEEEeccCc
Q 019733 19 VKKQSTCVIQLGNKSD---QCVAFKVKTTSPKKYCVRPNVSIIKPKAISDFTVTMQAQR 74 (336)
Q Consensus 19 ~~k~~s~~LtLtN~S~---~~VAFKVKTTaP~rY~VrPn~GiI~Pgesi~I~ITlqa~~ 74 (336)
.++...+.+.++|+-. ....|.|-...-.+=.... .|-|.||+++.+.+.+.|..
T Consensus 18 v~~~l~v~vsf~NPL~~~L~~c~~~vEG~GL~~~~~~~-~~~v~pg~~~~~~~~~~P~~ 75 (102)
T 2xzz_A 18 VGQECEVQIVFKNPLPVTLTNVVFRLEGSGLQRPKILN-VGDIGGNETVTLRQSFVPVR 75 (102)
T ss_dssp SSSCEEEEEEEECCSSSCBCSEEEEEEETTTEEEEEEE-ECCBCTTCEEEEEEEECCCS
T ss_pred cCCeEEEEEEEECCCCCcccCEEEEEECCCCCcceEEE-cCcCCCCCEEEEEEEEecCc
Confidence 3577899999999976 4668888765532222222 47799999999999998865
No 78
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=26.83 E-value=79 Score=23.85 Aligned_cols=33 Identities=21% Similarity=0.300 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHH
Q 019733 266 KLAKDFEELKLKLNVMDSQLREAEHTIRKLMEA 298 (336)
Q Consensus 266 ~~~~d~~~l~~~l~~~~~kl~ea~~~i~kl~e~ 298 (336)
.+.+.+..=..++..||..|++++..|..||+.
T Consensus 15 ~~~~~i~~Kde~I~eLE~~L~~kd~eI~eLr~~ 47 (67)
T 1zxa_A 15 DFAKILMLKEERIKELEKRLSEKEEEIQELKRK 47 (67)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555667788888888888899888853
No 79
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=26.75 E-value=2e+02 Score=21.55 Aligned_cols=18 Identities=22% Similarity=0.361 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHhHHHhhH
Q 019733 269 KDFEELKLKLNVMDSQLR 286 (336)
Q Consensus 269 ~d~~~l~~~l~~~~~kl~ 286 (336)
.++..|+.|+..++..|+
T Consensus 41 ~ev~~L~kKiq~lE~eld 58 (81)
T 1ic2_A 41 DELVALQKKLKGTEDELD 58 (81)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333344444444443333
No 80
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=26.52 E-value=1.1e+02 Score=24.62 Aligned_cols=42 Identities=14% Similarity=0.278 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHhhhhHHHH
Q 019733 266 KLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKD 307 (336)
Q Consensus 266 ~~~~d~~~l~~~l~~~~~kl~ea~~~i~kl~e~~r~~~~e~~ 307 (336)
++...++.||..|+.|+.+=++-+..|..+++.-|..+.+.+
T Consensus 3 ~~~~~~~~Lk~El~~L~~~E~~LD~~i~~~~~~l~~lted~~ 44 (106)
T 2aze_B 3 HMGGRLEGLTQDLRQLQESEQQLDHLMNICTTQLRLLSEDTD 44 (106)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 455667778888877777777777788777777777665433
No 81
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=26.34 E-value=1.9e+02 Score=22.02 Aligned_cols=14 Identities=0% Similarity=0.202 Sum_probs=5.5
Q ss_pred HHHHHHHHhHHHhh
Q 019733 272 EELKLKLNVMDSQL 285 (336)
Q Consensus 272 ~~l~~~l~~~~~kl 285 (336)
+.++.+++.+++.|
T Consensus 29 ~~~q~~i~~lE~eL 42 (84)
T 1gk4_A 29 ANYQDTIGRLQDEI 42 (84)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33334444444433
No 82
>1got_G GT-gamma; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: a.137.3.1 PDB: 1tbg_E 2trc_G 1b9y_B 1b9x_B 1a0r_G*
Probab=26.26 E-value=49 Score=25.24 Aligned_cols=51 Identities=18% Similarity=0.294 Sum_probs=33.1
Q ss_pred ccccccc-CCCchhH-HHHHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHH
Q 019733 249 PAEDASE-LKPAKDI-LELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEAR 299 (336)
Q Consensus 249 ~~~~~~~-~~~~~~~-~~~~~~~d~~~l~~~l~~~~~kl~ea~~~i~kl~e~~ 299 (336)
|++.++| ....++. ....+.+.+|.||..|+.-+.|..+|-..+++--++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~lr~~veqLr~el~~~RikVS~aa~~L~~Yce~~ 54 (73)
T 1got_G 2 PVINIEDPVINIEDLTEKDKLKMEVDQLKKEVTLERMLVSKCCEEFRDYVEER 54 (73)
T ss_dssp --------------CTHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHH
T ss_pred CcccCCCchhhhcccccHHHHHHHHHHHHHHHCCchhhHHHHHHHHHHHHHhc
Confidence 4566677 5666666 5668899999999999999999999988888877754
No 83
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=26.19 E-value=2.1e+02 Score=21.60 Aligned_cols=34 Identities=9% Similarity=0.194 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHh
Q 019733 267 LAKDFEELKLKLNVMDSQLREAEHTIRKLMEARK 300 (336)
Q Consensus 267 ~~~d~~~l~~~l~~~~~kl~ea~~~i~kl~e~~r 300 (336)
+..+.+++...|+.+|+.|.++..-+.....|-.
T Consensus 3 l~~e~~~~~~~i~~lE~eL~~~r~e~~~ql~EYq 36 (74)
T 2xv5_A 3 SARERDTSRRLLAEKEREMAEMRARMQQQLDEYQ 36 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667888889999999988887776655544433
No 84
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=25.94 E-value=2.3e+02 Score=22.09 Aligned_cols=34 Identities=29% Similarity=0.422 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHh
Q 019733 267 LAKDFEELKLKLNVMDSQLREAEHTIRKLMEARK 300 (336)
Q Consensus 267 ~~~d~~~l~~~l~~~~~kl~ea~~~i~kl~e~~r 300 (336)
+.-.+++||.|-+.|..+.++|..-...|+.+..
T Consensus 25 LqmEieELKekN~~L~~e~~e~~~~~~~L~~en~ 58 (81)
T 2jee_A 25 LQMEIEELKEKNNSLSQEVQNAQHQREELERENN 58 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 3446777777777777777776664444444433
No 85
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=25.82 E-value=1.7e+02 Score=22.55 Aligned_cols=40 Identities=20% Similarity=0.229 Sum_probs=19.0
Q ss_pred HHHHHHHHHhHHHhhHHHHHHHHHHHHHHhhhhHHHHHhh
Q 019733 271 FEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLK 310 (336)
Q Consensus 271 ~~~l~~~l~~~~~kl~ea~~~i~kl~e~~r~~~~e~~~l~ 310 (336)
+..+..++..+..+|...+.....|.+....-.+|+..|+
T Consensus 16 m~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~ 55 (89)
T 3bas_A 16 MKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLF 55 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444455555554
No 86
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=25.48 E-value=1.5e+02 Score=20.61 Aligned_cols=34 Identities=18% Similarity=0.148 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHH
Q 019733 265 LKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEA 298 (336)
Q Consensus 265 ~~~~~d~~~l~~~l~~~~~kl~ea~~~i~kl~e~ 298 (336)
.+...-++.++.+|+.+...|+.+..-|.+|...
T Consensus 22 ~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~q 55 (60)
T 3htk_A 22 SLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQ 55 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667788888888888888888888888553
No 87
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=25.35 E-value=1.3e+02 Score=29.36 Aligned_cols=51 Identities=12% Similarity=0.109 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHhhhhHHHHHhhhhhhhc
Q 019733 266 KLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELMAP 316 (336)
Q Consensus 266 ~~~~d~~~l~~~l~~~~~kl~ea~~~i~kl~e~~r~~~~e~~~l~~e~~~~ 316 (336)
.|..++++|+.++..++.++++.+..+..++|.-+....+|.+|.-+++-+
T Consensus 7 ~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l 57 (412)
T 3u06_A 7 ALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDL 57 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455667777777777777777777777777777666677777777776544
No 88
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=25.27 E-value=1.6e+02 Score=22.61 Aligned_cols=43 Identities=28% Similarity=0.495 Sum_probs=34.5
Q ss_pred HHHHhHHHhhHHHHHHHHHHHHHHhhhhHHHHHhhhhhhhccc
Q 019733 276 LKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELMAPAI 318 (336)
Q Consensus 276 ~~l~~~~~kl~ea~~~i~kl~e~~r~~~~e~~~l~~e~~~~~~ 318 (336)
..|..|.+.|.+-+.-|.+|+|.-...-+--+.|-.|+--+-|
T Consensus 18 ~~l~~Lr~eL~~Ke~eI~~L~e~i~lk~kd~ErLNDEiislNI 60 (75)
T 3a7o_A 18 NTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNDELISGTI 60 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHhhHHHHHhHH
Confidence 3788888889999999999999888777777778888765544
No 89
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=25.24 E-value=1.2e+02 Score=24.69 Aligned_cols=36 Identities=19% Similarity=0.306 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHh
Q 019733 265 LKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARK 300 (336)
Q Consensus 265 ~~~~~d~~~l~~~l~~~~~kl~ea~~~i~kl~e~~r 300 (336)
.+...|++.|+.++..|..+|++++.++..|-.+..
T Consensus 14 ~~~e~e~~~l~~~~~el~~~l~~~~~~~~e~g~~~~ 49 (125)
T 1joc_A 14 LKGEGEIEKLQTKVLELQRKLDNTTAAVQELGRENQ 49 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 445578888999998888899888888887765543
No 90
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=24.65 E-value=1.6e+02 Score=22.22 Aligned_cols=33 Identities=18% Similarity=0.179 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHH
Q 019733 266 KLAKDFEELKLKLNVMDSQLREAEHTIRKLMEA 298 (336)
Q Consensus 266 ~~~~d~~~l~~~l~~~~~kl~ea~~~i~kl~e~ 298 (336)
.+..|.++...++..++.+|++++....++-++
T Consensus 10 ~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~e 42 (81)
T 1ic2_A 10 MLKLDKENALDRAEQAEADKKAAEERSKQLEDE 42 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 345566666666666666666666555544444
No 91
>3idu_A Uncharacterized protein; all beta-protein, structural genomics, PSI-2, protein structure initiative; 1.70A {Pyrococcus furiosus} PDB: 2kl6_A
Probab=23.85 E-value=3e+02 Score=22.49 Aligned_cols=68 Identities=16% Similarity=0.115 Sum_probs=48.1
Q ss_pred CCeeEEEEEEEcCCCC-eEEEEEeeCCCCcEEEeCCceeeCCCCeEEEEEEeccCcCCCCCCCCCCeEEEEEEEcCCC
Q 019733 20 KKQSTCVIQLGNKSDQ-CVAFKVKTTSPKKYCVRPNVSIIKPKAISDFTVTMQAQRVAPPDLQCKDKFLIQGIVVPFG 96 (336)
Q Consensus 20 ~k~~s~~LtLtN~S~~-~VAFKVKTTaP~rY~VrPn~GiI~Pgesi~I~ITlqa~~~~P~d~k~kDKFLVqs~~vp~g 96 (336)
++.....++++|.... .=+|+|+-...+.+.-.-..+ |.+|++..|.++..+.. ..-+.|...+-+.+
T Consensus 32 G~~~ti~vtV~N~G~~~a~~~~V~lyvng~~v~t~~v~-La~G~s~tv~f~~~~~~--------~G~~~v~AvVD~~n 100 (127)
T 3idu_A 32 NKLAEYEVHVKNLGGIGVPSTKVRVYINGTLYKNWTVS-LGPKEEKVLTFNWTPTQ--------EGMYRINATVDEEN 100 (127)
T ss_dssp TCCEEEEEEEEECSSSCEEEEEEEEEETTEEEEEEEEE-ECTTCEEEEEEEECCSS--------CEEEEEEEEESTTC
T ss_pred CCEEEEEEEEEECCCCccCCcEEEEEECCEEEeeEEec-cCCCCeEEEEEEEEcCC--------CcEEEEEEEEcCCC
Confidence 5678899999999864 467888866666654443334 99999999999886421 34566777666554
No 92
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=23.77 E-value=2.9e+02 Score=22.40 Aligned_cols=29 Identities=10% Similarity=0.076 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHhhHHHHH
Q 019733 262 ILELKLAKDFEELKLKLNVMDSQLREAEH 290 (336)
Q Consensus 262 ~~~~~~~~d~~~l~~~l~~~~~kl~ea~~ 290 (336)
.....|.-+++.|++.-+.|+..|.+++.
T Consensus 45 r~iq~L~~el~~l~~~~~sLE~~l~e~e~ 73 (131)
T 3tnu_A 45 RTMQNLEIELQSQLSMKASLENSLEETKG 73 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 34556777777777777777777776654
No 93
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=23.60 E-value=2.3e+02 Score=21.08 Aligned_cols=52 Identities=19% Similarity=0.221 Sum_probs=28.0
Q ss_pred cccc-CCCchhHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHhhhhHHHHHhhhh
Q 019733 252 DASE-LKPAKDILELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHE 312 (336)
Q Consensus 252 ~~~~-~~~~~~~~~~~~~~d~~~l~~~l~~~~~kl~ea~~~i~kl~e~~r~~~~e~~~l~~e 312 (336)
+++| ++..+.+ =++|.-|+.-|+|.++--++=..|.+|-|.--++-.+||.|
T Consensus 4 dlsDgpit~qey---------levK~ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQse 56 (63)
T 2w6a_A 4 GSSDGAVTLQEY---------LELKKALATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAE 56 (63)
T ss_dssp C--CCSSCHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCcchHHHH---------HHHHHHHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhh
Confidence 3455 5655555 34555666666666555555555555555555555555555
No 94
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=22.98 E-value=17 Score=37.25 Aligned_cols=51 Identities=12% Similarity=0.295 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHh-----------HHHhhHHHHHHHHHHHHHHhhhhHHHHHhhhhh
Q 019733 263 LELKLAKDFEELKLKLNV-----------MDSQLREAEHTIRKLMEARKLATREKDMLKHEL 313 (336)
Q Consensus 263 ~~~~~~~d~~~l~~~l~~-----------~~~kl~ea~~~i~kl~e~~r~~~~e~~~l~~e~ 313 (336)
.+..-+...++.+.+|.. |+.+++||+..|.+|.+++.....|...||+|+
T Consensus 381 ~l~~~~~~~e~~~~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 442 (575)
T 2i1j_A 381 ELEQRQNELQAMMQRLEETKNMEAAERQKLEDEIRAKQEEVSRIQQEVELKDSETRRLQEEV 442 (575)
T ss_dssp -------------------------------------------------------------C
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 95
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=22.98 E-value=3e+02 Score=22.23 Aligned_cols=28 Identities=14% Similarity=0.339 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhhHHHHH
Q 019733 263 LELKLAKDFEELKLKLNVMDSQLREAEH 290 (336)
Q Consensus 263 ~~~~~~~d~~~l~~~l~~~~~kl~ea~~ 290 (336)
....|.-+++.|++.-+.|+..|.+++.
T Consensus 44 ~iq~L~~el~~l~~~~~~LE~~l~e~e~ 71 (129)
T 3tnu_B 44 MIQRLRAEIDNVKKQCANLQNAIADAEQ 71 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3445666677777777777776666553
No 96
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=22.67 E-value=1.5e+02 Score=23.88 Aligned_cols=25 Identities=16% Similarity=0.201 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhhHH
Q 019733 263 LELKLAKDFEELKLKLNVMDSQLRE 287 (336)
Q Consensus 263 ~~~~~~~d~~~l~~~l~~~~~kl~e 287 (336)
....|..+.++|+.+++.||++|+-
T Consensus 20 ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 20 KVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777778888888888888765
No 97
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=22.46 E-value=2.3e+02 Score=25.39 Aligned_cols=48 Identities=19% Similarity=0.203 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHh--hhhHHHHHhhhhhhhc
Q 019733 269 KDFEELKLKLNVMDSQLREAEHTIRKLMEARK--LATREKDMLKHELMAP 316 (336)
Q Consensus 269 ~d~~~l~~~l~~~~~kl~ea~~~i~kl~e~~r--~~~~e~~~l~~e~~~~ 316 (336)
..++.++..+..++..+.++...|.+.++.-- ++.+|-+.|++|+.++
T Consensus 53 ~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~~~kE~~aL~kEie~~ 102 (256)
T 3na7_A 53 EEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKSERELRSLNIEEDIA 102 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence 33334444444444444444444444433321 2567888888888765
No 98
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=22.42 E-value=2.2e+02 Score=20.50 Aligned_cols=37 Identities=22% Similarity=0.285 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHhh
Q 019733 265 LKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKL 301 (336)
Q Consensus 265 ~~~~~d~~~l~~~l~~~~~kl~ea~~~i~kl~e~~r~ 301 (336)
..|.+.||-||..=+.|..+|+.--+-++||--|...
T Consensus 6 dQL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~ 42 (54)
T 1deb_A 6 DQLLKQVEALKMENSNLRQELEDNSNHLTKLETEASN 42 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhh
Confidence 4578889999999999999999999999999776543
No 99
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=22.40 E-value=1.5e+02 Score=32.72 Aligned_cols=10 Identities=30% Similarity=0.454 Sum_probs=5.0
Q ss_pred HHHHHhhhhh
Q 019733 304 REKDMLKHEL 313 (336)
Q Consensus 304 ~e~~~l~~e~ 313 (336)
+||+.|+.|+
T Consensus 1063 ~~~~~~~~~~ 1072 (1080)
T 2dfs_A 1063 EETKQLELDL 1072 (1080)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4555555544
No 100
>1a92_A Delta antigen; leucine zipper, coiled-coil, oligomerization; 1.80A {Hepatitis delta virus} SCOP: h.4.6.1 PDB: 1by0_A
Probab=22.18 E-value=1.1e+02 Score=21.86 Aligned_cols=27 Identities=30% Similarity=0.432 Sum_probs=22.2
Q ss_pred HHHHHHHhHHHhhHHHHHHHHHHHHHH
Q 019733 273 ELKLKLNVMDSQLREAEHTIRKLMEAR 299 (336)
Q Consensus 273 ~l~~~l~~~~~kl~ea~~~i~kl~e~~ 299 (336)
+-+.|+..||-.|+.+.+.|.||-++.
T Consensus 11 ~~Rkk~eeler~lrk~kk~iKklEdeN 37 (50)
T 1a92_A 11 SGRKKLEELERDLRKLKKKIKKLEEDN 37 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccC
Confidence 456778888999999999999998764
No 101
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=21.92 E-value=90 Score=29.41 Aligned_cols=45 Identities=16% Similarity=0.113 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHhhhhHHHHHhhhhhhhc
Q 019733 269 KDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELMAP 316 (336)
Q Consensus 269 ~d~~~l~~~l~~~~~kl~ea~~~i~kl~e~~r~~~~e~~~l~~e~~~~ 316 (336)
.++++|..+...|+.++++-++.+.+++.. +.+-++.|++.+.+.
T Consensus 185 ~eie~L~~~~~~L~eEi~~Le~~~e~~~k~---n~~rl~~Lqk~~~~~ 229 (315)
T 2ve7_A 185 FKLESLEAKNRALNEQIARLEQERSTANKA---NAERLKRLQKSADLY 229 (315)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHTTTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhh---hHHHHHHHHHHHHHH
Confidence 478888888888888888887777666653 233356677776544
No 102
>3jt0_A Lamin-B1; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, HR5546A, LMNB1_human; 2.39A {Homo sapiens}
Probab=21.12 E-value=1.1e+02 Score=25.93 Aligned_cols=41 Identities=17% Similarity=0.181 Sum_probs=27.1
Q ss_pred EEEEEEcCCCCeEE---EEEeeCCCC---cEEEeCCceeeCCCCeEEE
Q 019733 25 CVIQLGNKSDQCVA---FKVKTTSPK---KYCVRPNVSIIKPKAISDF 66 (336)
Q Consensus 25 ~~LtLtN~S~~~VA---FKVKTTaP~---rY~VrPn~GiI~Pgesi~I 66 (336)
..++|.|.+++.+. |+|+-...+ .|. -|..=+|+||++++|
T Consensus 38 kfV~L~N~s~~~~~LgGW~L~r~v~g~~~~y~-FP~~~~L~pg~~VtV 84 (144)
T 3jt0_A 38 KFIRLKNTSEQDQPMGGWEMIRKIGDTSVSYK-YTSRYVLKAGQTVTI 84 (144)
T ss_dssp SEEEEEECSSSCEECTTCEEEEEETTEEEEEE-CCTTCEECTTCEEEE
T ss_pred CEEEEEECCCCceecCCcEEEEEeCCCceEEE-cCCCcEECCCCEEEE
Confidence 47899999887664 566533322 243 455558999999765
No 103
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=20.95 E-value=87 Score=24.92 Aligned_cols=28 Identities=25% Similarity=0.361 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhhHHHHH
Q 019733 263 LELKLAKDFEELKLKLNVMDSQLREAEH 290 (336)
Q Consensus 263 ~~~~~~~d~~~l~~~l~~~~~kl~ea~~ 290 (336)
....|.+|++.||.+|..|.+=|+.|+.
T Consensus 20 l~~gv~~~i~~Lk~eL~~m~a~L~da~~ 47 (115)
T 3qfl_A 20 LHKGVKKNIEDLGKELESMNAALIKIGE 47 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHhchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577889999999999999998888764
No 104
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=20.95 E-value=1.5e+02 Score=22.96 Aligned_cols=28 Identities=11% Similarity=0.173 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHhHHHhhHHHHHHH
Q 019733 265 LKLAKDFEELKLKLNVMDSQLREAEHTI 292 (336)
Q Consensus 265 ~~~~~d~~~l~~~l~~~~~kl~ea~~~i 292 (336)
..+...++.|.+++..++..++|++.++
T Consensus 16 ~~l~~~~~~l~~q~~~l~~~~~e~~~~~ 43 (117)
T 2zqm_A 16 ESYQQQLQLVVQQKQKVQLELTEAKKAL 43 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444433
No 105
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=20.80 E-value=1e+02 Score=19.09 Aligned_cols=21 Identities=33% Similarity=0.604 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHhHHHhhH
Q 019733 266 KLAKDFEELKLKLNVMDSQLR 286 (336)
Q Consensus 266 ~~~~d~~~l~~~l~~~~~kl~ 286 (336)
.|-++.|.|+.+|..|..||+
T Consensus 5 elykeledlqerlrklrkklr 25 (27)
T 3twe_A 5 ELYKELEDLQERLRKLRKKLR 25 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 345666777777776666654
No 106
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=20.80 E-value=1.5e+02 Score=22.69 Aligned_cols=32 Identities=13% Similarity=0.320 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHhHHHhhHHHHHHHHHH
Q 019733 264 ELKLAKDFEELKLKLNVMDSQLREAEHTIRKL 295 (336)
Q Consensus 264 ~~~~~~d~~~l~~~l~~~~~kl~ea~~~i~kl 295 (336)
+..+...++.+.+++..++..++|++.++..|
T Consensus 10 f~~lq~~~~~l~~q~~~l~~~~~e~~~~~~EL 41 (107)
T 1fxk_A 10 FQQLQQQAQAISVQKQTVEMQINETQKALEEL 41 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555556666665555555554433
No 107
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=20.76 E-value=1e+02 Score=25.25 Aligned_cols=31 Identities=29% Similarity=0.448 Sum_probs=23.0
Q ss_pred HH-HHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHh
Q 019733 267 LA-KDFEELKLKLNVMDSQLREAEHTIRKLMEARK 300 (336)
Q Consensus 267 ~~-~d~~~l~~~l~~~~~kl~ea~~~i~kl~e~~r 300 (336)
.+ .|+++|...|+..|.+|-.|.+ ||+++.+
T Consensus 32 ~tM~~ieeLQ~Ei~~~E~QL~iArQ---KLkdAe~ 63 (107)
T 2k48_A 32 FTMSTLQELQENITAHEQQLVTARQ---KLKDAEK 63 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
Confidence 44 8899999999999998887755 4554443
No 108
>2l7k_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Clostridium difficile}
Probab=20.60 E-value=43 Score=25.99 Aligned_cols=38 Identities=29% Similarity=0.391 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHhHHHhhHH-HHHHHHHHHHHHhhhhHHHHH
Q 019733 268 AKDFEELKLKLNVMDSQLRE-AEHTIRKLMEARKLATREKDM 308 (336)
Q Consensus 268 ~~d~~~l~~~l~~~~~kl~e-a~~~i~kl~e~~r~~~~e~~~ 308 (336)
++=+++|+.-|.-||+.+++ |.++|.||. +.|-.|=+.
T Consensus 21 ~~lie~i~~~Lp~mD~eMr~La~~tl~KL~---~MTDaefae 59 (76)
T 2l7k_A 21 RGLMENINAALPFMDEDMRELAKRTLAKIA---PLTENEYAE 59 (76)
T ss_dssp HHHHHHHHHSTTTSCHHHHHHHHHHHHHHT---TCCHHHHHH
T ss_pred HHHHHHHHHHcCcccHHHHHHHHHHHHHHH---hcCHHHHhh
Confidence 34578888889989999988 999999996 344444443
No 109
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=20.52 E-value=97 Score=22.05 Aligned_cols=28 Identities=14% Similarity=0.200 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHhHHHhhHHHHHHH
Q 019733 265 LKLAKDFEELKLKLNVMDSQLREAEHTI 292 (336)
Q Consensus 265 ~~~~~d~~~l~~~l~~~~~kl~ea~~~i 292 (336)
..|..+.++||.|++.|..+++|...-+
T Consensus 22 eaLk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 22 ELLRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6678888999999999998888876644
No 110
>3f1i_H Hepatocyte growth factor-regulated tyrosine kinas substrate; HGS, ESCRT, ubiquitin, MVB, endosome, membrane, metal- phosphoprotein, protein transport, transport; 2.30A {Homo sapiens}
Probab=20.24 E-value=2.3e+02 Score=22.85 Aligned_cols=37 Identities=27% Similarity=0.382 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHhhhhHHHHHhhhhh
Q 019733 267 LAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHEL 313 (336)
Q Consensus 267 ~~~d~~~l~~~l~~~~~kl~ea~~~i~kl~e~~r~~~~e~~~l~~e~ 313 (336)
.+.-+|.|.-||+ +.+||..++-.||+|- |+||++..
T Consensus 60 ~R~~yE~LQDkL~----qi~eAR~ALdaLR~eH------~~Klrr~a 96 (98)
T 3f1i_H 60 RRLYYEGLQDKLA----QIRDARGALSALREEH------REKLRRAA 96 (98)
T ss_dssp HHHHHHHHHHHHH----HHHHHHHHHHHHHHHH------HHHHHHHH
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHH------HHHHHHHh
Confidence 3444555555554 4578999999999986 45666654
No 111
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=20.15 E-value=99 Score=34.05 Aligned_cols=34 Identities=18% Similarity=0.270 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHH
Q 019733 265 LKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEA 298 (336)
Q Consensus 265 ~~~~~d~~~l~~~l~~~~~kl~ea~~~i~kl~e~ 298 (336)
..+.+.+++|+.+|..++..+++++..+.+|+++
T Consensus 860 ~~L~~eL~el~~~L~~le~~l~ele~~l~~Le~e 893 (1184)
T 1i84_S 860 QAKDEELQRTKERQQKAEAELKELEQKHTQLCEE 893 (1184)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555544444444433
Done!