Query 019734
Match_columns 336
No_of_seqs 260 out of 2521
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 04:07:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019734.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019734hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4626 O-linked N-acetylgluco 99.9 1.9E-24 4.1E-29 197.8 21.4 244 77-334 230-487 (966)
2 KOG4626 O-linked N-acetylgluco 99.9 1.6E-24 3.5E-29 198.2 17.7 244 78-335 197-454 (966)
3 KOG1550 Extracellular protein 99.9 8.4E-21 1.8E-25 182.5 25.6 242 87-329 230-535 (552)
4 COG0790 FOG: TPR repeat, SEL1 99.9 1.8E-20 3.9E-25 167.5 25.8 200 76-308 52-276 (292)
5 COG0790 FOG: TPR repeat, SEL1 99.9 7E-20 1.5E-24 163.7 25.9 172 115-314 51-236 (292)
6 KOG1550 Extracellular protein 99.8 6.4E-19 1.4E-23 169.5 22.1 235 79-314 175-442 (552)
7 TIGR00990 3a0801s09 mitochondr 99.8 1.7E-17 3.6E-22 163.1 30.8 251 69-334 131-464 (615)
8 PRK15174 Vi polysaccharide exp 99.8 6.3E-17 1.4E-21 159.3 31.2 248 74-335 85-384 (656)
9 PRK15174 Vi polysaccharide exp 99.8 8.9E-17 1.9E-21 158.3 29.8 256 64-335 41-350 (656)
10 TIGR00990 3a0801s09 mitochondr 99.8 9.5E-17 2.1E-21 157.8 29.7 244 78-333 307-572 (615)
11 KOG1155 Anaphase-promoting com 99.8 5.1E-17 1.1E-21 145.0 23.3 227 60-298 257-536 (559)
12 PRK11788 tetratricopeptide rep 99.8 6E-16 1.3E-20 143.8 29.6 251 70-335 40-314 (389)
13 TIGR02917 PEP_TPR_lipo putativ 99.8 2.3E-15 5E-20 153.2 32.3 249 72-334 438-700 (899)
14 PRK11447 cellulose synthase su 99.8 9.8E-16 2.1E-20 160.2 30.0 247 71-333 357-701 (1157)
15 TIGR02917 PEP_TPR_lipo putativ 99.7 1E-15 2.2E-20 155.8 28.7 221 64-298 21-256 (899)
16 PRK11447 cellulose synthase su 99.7 2.4E-15 5.2E-20 157.3 31.4 254 72-335 276-669 (1157)
17 PRK09782 bacteriophage N4 rece 99.7 1E-14 2.2E-19 147.7 30.8 237 79-330 490-738 (987)
18 PRK09782 bacteriophage N4 rece 99.7 1.9E-14 4.2E-19 145.7 30.2 244 79-335 452-709 (987)
19 PRK11189 lipoprotein NlpI; Pro 99.7 2.2E-14 4.8E-19 128.2 26.7 218 79-308 40-276 (296)
20 KOG1126 DNA-binding cell divis 99.7 6.5E-16 1.4E-20 143.6 16.9 224 69-304 357-626 (638)
21 KOG1126 DNA-binding cell divis 99.7 2.7E-15 5.8E-20 139.6 20.1 233 71-317 325-607 (638)
22 PRK11788 tetratricopeptide rep 99.7 4.3E-14 9.3E-19 131.4 28.4 252 67-330 71-345 (389)
23 KOG2003 TPR repeat-containing 99.7 6.8E-15 1.5E-19 131.3 21.2 224 69-299 423-690 (840)
24 KOG1129 TPR repeat-containing 99.7 4E-14 8.7E-19 121.7 23.3 219 105-335 227-461 (478)
25 KOG1155 Anaphase-promoting com 99.7 1.3E-13 2.8E-18 123.5 26.8 186 100-297 261-494 (559)
26 PRK12370 invasion protein regu 99.7 1E-13 2.2E-18 134.4 28.2 209 77-297 273-501 (553)
27 PRK12370 invasion protein regu 99.6 1.3E-13 2.9E-18 133.6 27.1 188 103-299 260-471 (553)
28 TIGR02521 type_IV_pilW type IV 99.6 2.5E-13 5.4E-18 116.0 25.5 186 100-297 30-231 (234)
29 KOG4014 Uncharacterized conser 99.6 1.8E-14 3.9E-19 114.0 15.7 157 99-266 66-233 (248)
30 TIGR02521 type_IV_pilW type IV 99.6 2E-13 4.3E-18 116.6 23.8 191 136-334 30-234 (234)
31 PRK10049 pgaA outer membrane p 99.6 6.3E-13 1.4E-17 133.6 30.8 107 68-181 52-162 (765)
32 KOG1125 TPR repeat-containing 99.6 3.2E-14 7E-19 130.6 19.1 235 68-317 288-558 (579)
33 PF13429 TPR_15: Tetratricopep 99.6 7E-15 1.5E-19 130.6 14.0 251 67-330 10-275 (280)
34 PRK10049 pgaA outer membrane p 99.6 1.1E-12 2.4E-17 131.8 30.8 253 68-335 86-459 (765)
35 KOG1173 Anaphase-promoting com 99.6 2.6E-13 5.6E-18 124.3 22.4 226 74-313 287-535 (611)
36 KOG4014 Uncharacterized conser 99.6 6.1E-14 1.3E-18 111.0 14.9 147 78-229 82-232 (248)
37 KOG2002 TPR-containing nuclear 99.6 1.2E-12 2.6E-17 126.5 26.1 246 77-335 248-528 (1018)
38 COG3063 PilF Tfp pilus assembl 99.6 1.3E-12 2.8E-17 107.7 20.8 166 100-277 34-214 (250)
39 KOG1129 TPR repeat-containing 99.6 2.2E-13 4.8E-18 117.3 16.0 210 76-300 234-460 (478)
40 KOG2002 TPR-containing nuclear 99.5 7.4E-12 1.6E-16 121.1 27.9 232 64-308 269-537 (1018)
41 COG3063 PilF Tfp pilus assembl 99.5 1.7E-12 3.7E-17 106.9 19.3 192 59-263 29-233 (250)
42 KOG1173 Anaphase-promoting com 99.5 3.1E-12 6.7E-17 117.3 21.7 258 63-334 242-520 (611)
43 KOG2003 TPR repeat-containing 99.5 8.7E-12 1.9E-16 111.7 23.1 199 70-282 495-707 (840)
44 PRK11189 lipoprotein NlpI; Pro 99.5 7.6E-12 1.6E-16 111.9 22.9 206 119-334 40-267 (296)
45 KOG0547 Translocase of outer m 99.5 1.9E-11 4.1E-16 110.5 22.8 226 69-307 330-575 (606)
46 KOG1840 Kinesin light chain [C 99.5 2.5E-11 5.4E-16 113.9 23.1 216 70-297 204-478 (508)
47 PF13429 TPR_15: Tetratricopep 99.5 1.3E-12 2.8E-17 116.1 13.7 209 74-297 53-276 (280)
48 KOG2076 RNA polymerase III tra 99.4 4E-10 8.6E-15 108.7 28.3 247 67-329 141-509 (895)
49 COG2956 Predicted N-acetylgluc 99.4 9.9E-10 2.2E-14 94.9 26.0 255 64-335 35-314 (389)
50 TIGR00540 hemY_coli hemY prote 99.4 2.2E-09 4.7E-14 100.6 29.0 124 196-329 262-396 (409)
51 KOG0547 Translocase of outer m 99.3 1.2E-09 2.7E-14 99.0 25.6 218 101-330 326-564 (606)
52 KOG1130 Predicted G-alpha GTPa 99.3 1.8E-11 3.9E-16 108.5 13.7 245 68-326 20-338 (639)
53 PRK14574 hmsH outer membrane p 99.3 1.5E-09 3.2E-14 108.5 29.0 262 64-334 33-398 (822)
54 PLN02789 farnesyltranstransfer 99.3 6.7E-09 1.4E-13 93.3 26.0 199 77-280 49-266 (320)
55 COG2956 Predicted N-acetylgluc 99.3 2.8E-09 6.1E-14 92.2 22.2 206 118-333 48-279 (389)
56 KOG1840 Kinesin light chain [C 99.3 2.1E-09 4.5E-14 101.1 22.8 218 101-330 199-477 (508)
57 KOG1125 TPR repeat-containing 99.3 5.6E-10 1.2E-14 103.1 18.4 208 105-324 289-519 (579)
58 PRK10747 putative protoheme IX 99.3 1.8E-08 3.9E-13 94.0 28.9 243 69-331 88-389 (398)
59 PRK14574 hmsH outer membrane p 99.3 1.9E-08 4.2E-13 100.7 30.7 254 69-336 106-517 (822)
60 TIGR03302 OM_YfiO outer membra 99.3 2E-09 4.4E-14 93.0 21.1 169 99-297 31-231 (235)
61 PLN03218 maturation of RBCL 1; 99.2 5.1E-08 1.1E-12 100.2 33.4 241 77-330 484-746 (1060)
62 PLN03218 maturation of RBCL 1; 99.2 9.1E-08 2E-12 98.4 33.6 246 74-332 516-783 (1060)
63 KOG0495 HAT repeat protein [RN 99.2 1.6E-08 3.5E-13 94.7 25.3 257 67-336 586-884 (913)
64 TIGR03302 OM_YfiO outer membra 99.2 3.5E-09 7.5E-14 91.5 20.0 193 47-265 15-231 (235)
65 PLN02789 farnesyltranstransfer 99.2 3.7E-08 8E-13 88.5 25.7 212 119-334 51-304 (320)
66 PRK10370 formate-dependent nit 99.1 2.1E-09 4.4E-14 90.2 15.4 117 182-303 56-178 (198)
67 TIGR00540 hemY_coli hemY prote 99.1 2.6E-08 5.6E-13 93.3 24.1 218 68-298 121-399 (409)
68 PRK15359 type III secretion sy 99.1 3.7E-09 8E-14 84.1 15.7 114 125-243 13-136 (144)
69 PRK15359 type III secretion sy 99.1 3.8E-09 8.2E-14 84.0 15.4 105 100-208 23-137 (144)
70 PRK10747 putative protoheme IX 99.1 2.1E-07 4.6E-12 86.8 29.1 220 101-335 84-326 (398)
71 KOG0548 Molecular co-chaperone 99.1 1.3E-07 2.9E-12 87.0 25.9 259 67-335 4-458 (539)
72 cd05804 StaR_like StaR_like; a 99.1 3.3E-08 7.2E-13 90.7 22.6 187 99-298 4-215 (355)
73 PRK10370 formate-dependent nit 99.1 4.8E-09 1E-13 88.0 14.9 109 118-230 52-173 (198)
74 PLN03081 pentatricopeptide (PP 99.1 1.3E-07 2.9E-12 94.6 27.9 244 74-331 96-388 (697)
75 PLN03081 pentatricopeptide (PP 99.1 3E-08 6.5E-13 99.3 22.6 201 76-294 270-487 (697)
76 KOG0624 dsRNA-activated protei 99.0 2.9E-07 6.3E-12 80.5 23.8 256 67-336 40-374 (504)
77 KOG1130 Predicted G-alpha GTPa 99.0 2.2E-09 4.8E-14 95.5 10.8 177 79-263 109-341 (639)
78 KOG4162 Predicted calmodulin-b 99.0 1.5E-07 3.3E-12 89.9 22.9 205 83-299 462-784 (799)
79 PRK15179 Vi polysaccharide bio 99.0 6.9E-08 1.5E-12 95.0 20.7 123 100-230 85-217 (694)
80 KOG1128 Uncharacterized conser 99.0 2.2E-08 4.7E-13 95.0 15.4 212 100-332 397-616 (777)
81 KOG1174 Anaphase-promoting com 99.0 3.1E-07 6.7E-12 82.1 21.7 191 118-315 313-519 (564)
82 PRK15179 Vi polysaccharide bio 98.9 3E-07 6.4E-12 90.6 22.6 122 169-298 86-217 (694)
83 cd05804 StaR_like StaR_like; a 98.9 1.8E-06 3.8E-11 79.3 26.7 222 68-297 46-292 (355)
84 PRK15363 pathogenicity island 98.9 2E-08 4.3E-13 79.3 10.6 90 70-165 40-131 (157)
85 KOG2076 RNA polymerase III tra 98.9 2.4E-06 5.1E-11 83.2 26.1 109 118-230 152-270 (895)
86 KOG0495 HAT repeat protein [RN 98.9 3E-06 6.4E-11 80.0 25.4 248 74-335 525-785 (913)
87 PF14938 SNAP: Soluble NSF att 98.9 1.2E-07 2.5E-12 84.3 15.9 161 119-299 29-226 (282)
88 TIGR02552 LcrH_SycD type III s 98.9 5.8E-08 1.3E-12 76.1 12.2 109 186-302 4-118 (135)
89 KOG0548 Molecular co-chaperone 98.8 6E-07 1.3E-11 82.7 20.1 96 200-303 361-460 (539)
90 PLN03088 SGT1, suppressor of 98.8 1.1E-07 2.4E-12 87.2 14.2 110 66-181 3-116 (356)
91 PLN03077 Protein ECB2; Provisi 98.8 1.6E-06 3.4E-11 89.0 24.0 200 119-329 403-651 (857)
92 PRK15363 pathogenicity island 98.8 1.8E-07 3.9E-12 73.9 12.9 96 196-299 34-133 (157)
93 PF12569 NARP1: NMDA receptor- 98.8 1.2E-05 2.5E-10 76.8 27.2 144 182-333 128-292 (517)
94 TIGR02552 LcrH_SycD type III s 98.8 2.9E-07 6.4E-12 72.1 13.7 100 127-230 5-114 (135)
95 KOG1156 N-terminal acetyltrans 98.8 9.3E-06 2E-10 76.6 25.3 256 67-336 9-287 (700)
96 KOG0550 Molecular chaperone (D 98.7 4.5E-07 9.8E-12 81.1 15.4 219 67-299 51-351 (486)
97 PLN03077 Protein ECB2; Provisi 98.7 3.8E-06 8.3E-11 86.2 24.7 196 120-325 303-511 (857)
98 KOG1174 Anaphase-promoting com 98.7 1.3E-06 2.9E-11 78.2 18.1 188 68-269 303-503 (564)
99 KOG1127 TPR repeat-containing 98.7 8E-07 1.7E-11 87.1 18.0 257 70-334 567-881 (1238)
100 PRK14720 transcript cleavage f 98.7 1.5E-06 3.2E-11 86.9 19.6 121 100-229 30-177 (906)
101 COG5010 TadD Flp pilus assembl 98.7 2.1E-06 4.6E-11 72.6 17.7 148 135-291 65-224 (257)
102 PRK14720 transcript cleavage f 98.7 1.2E-06 2.5E-11 87.6 18.8 203 69-281 35-269 (906)
103 KOG0624 dsRNA-activated protei 98.7 3.2E-05 7E-10 68.0 24.4 194 100-301 37-255 (504)
104 COG4783 Putative Zn-dependent 98.7 5.4E-06 1.2E-10 75.9 20.5 146 100-298 305-454 (484)
105 COG3071 HemY Uncharacterized e 98.7 0.00017 3.8E-09 64.6 29.4 232 68-315 87-375 (400)
106 KOG4162 Predicted calmodulin-b 98.7 4.1E-05 9E-10 73.7 27.0 248 77-334 406-785 (799)
107 KOG1127 TPR repeat-containing 98.7 1.8E-06 3.8E-11 84.8 18.0 213 75-297 429-658 (1238)
108 PF14938 SNAP: Soluble NSF att 98.7 2.4E-06 5.2E-11 75.9 17.5 165 151-335 29-228 (282)
109 CHL00033 ycf3 photosystem I as 98.6 8E-07 1.7E-11 72.6 13.2 102 76-181 10-118 (168)
110 COG5010 TadD Flp pilus assembl 98.6 2.1E-06 4.5E-11 72.7 15.5 152 100-264 66-229 (257)
111 PRK02603 photosystem I assembl 98.6 2.7E-06 5.9E-11 69.7 15.0 80 98-181 32-118 (172)
112 KOG1156 N-terminal acetyltrans 98.6 6E-05 1.3E-09 71.3 24.7 88 60-153 36-125 (700)
113 PF13414 TPR_11: TPR repeat; P 98.6 2.4E-07 5.2E-12 63.6 6.9 63 100-166 2-67 (69)
114 PRK04841 transcriptional regul 98.5 3.4E-05 7.4E-10 79.7 25.1 248 72-330 459-758 (903)
115 PLN03088 SGT1, suppressor of 98.5 2.2E-06 4.7E-11 78.7 14.5 100 105-208 6-115 (356)
116 PF09976 TPR_21: Tetratricopep 98.5 4.9E-06 1.1E-10 66.2 13.3 124 69-227 15-144 (145)
117 PF12895 Apc3: Anaphase-promot 98.5 7.9E-07 1.7E-11 63.6 7.3 81 78-163 2-84 (84)
118 KOG1128 Uncharacterized conser 98.4 7.1E-06 1.5E-10 78.4 15.2 204 69-298 402-616 (777)
119 PRK02603 photosystem I assembl 98.4 8.7E-06 1.9E-10 66.8 14.1 81 196-284 34-121 (172)
120 PRK10866 outer membrane biogen 98.4 9.2E-05 2E-09 64.1 20.7 53 238-294 180-237 (243)
121 PF04733 Coatomer_E: Coatomer 98.4 1.3E-06 2.8E-11 77.6 9.1 135 196-336 130-269 (290)
122 PF13414 TPR_11: TPR repeat; P 98.4 1.6E-06 3.4E-11 59.4 7.4 64 232-299 2-68 (69)
123 TIGR02795 tol_pal_ybgF tol-pal 98.4 7.9E-06 1.7E-10 62.1 11.9 96 67-166 4-105 (119)
124 PF12688 TPR_5: Tetratrico pep 98.4 1.2E-05 2.5E-10 61.4 12.3 88 102-193 2-103 (120)
125 TIGR02795 tol_pal_ybgF tol-pal 98.4 8.7E-06 1.9E-10 61.8 11.8 97 197-301 2-108 (119)
126 CHL00033 ycf3 photosystem I as 98.4 1.8E-05 3.9E-10 64.5 14.3 92 197-296 35-140 (168)
127 COG4783 Putative Zn-dependent 98.4 2.7E-05 5.8E-10 71.5 16.3 142 68-230 309-454 (484)
128 PRK04841 transcriptional regul 98.3 9.3E-05 2E-09 76.6 22.0 216 72-299 498-761 (903)
129 cd00189 TPR Tetratricopeptide 98.3 6.9E-06 1.5E-10 58.6 10.0 93 199-299 2-98 (100)
130 PRK15331 chaperone protein Sic 98.3 7.7E-06 1.7E-10 65.0 10.7 92 69-166 41-134 (165)
131 PRK11906 transcriptional regul 98.3 9.1E-05 2E-09 68.3 18.8 129 103-268 257-403 (458)
132 KOG3060 Uncharacterized conser 98.3 0.00027 5.9E-09 59.8 19.9 154 119-277 66-231 (289)
133 COG3071 HemY Uncharacterized e 98.3 0.0014 2.9E-08 59.0 25.2 211 69-297 122-389 (400)
134 cd00189 TPR Tetratricopeptide 98.3 1.5E-05 3.2E-10 56.8 11.1 57 104-164 3-61 (100)
135 KOG3060 Uncharacterized conser 98.3 0.00046 9.9E-09 58.5 20.7 161 141-310 56-232 (289)
136 KOG0550 Molecular chaperone (D 98.3 9.1E-05 2E-09 66.7 17.5 155 66-230 170-350 (486)
137 PRK10803 tol-pal system protei 98.3 2E-05 4.4E-10 68.8 13.3 97 66-166 143-246 (263)
138 PF13432 TPR_16: Tetratricopep 98.3 3.4E-06 7.3E-11 57.1 6.6 58 105-166 1-60 (65)
139 PF12569 NARP1: NMDA receptor- 98.3 0.0006 1.3E-08 65.3 23.8 221 69-299 42-292 (517)
140 KOG0553 TPR repeat-containing 98.3 1.4E-05 3E-10 69.1 11.4 88 119-206 95-192 (304)
141 KOG1941 Acetylcholine receptor 98.2 0.00017 3.7E-09 64.0 18.1 222 64-297 5-274 (518)
142 PF09976 TPR_21: Tetratricopep 98.2 6E-05 1.3E-09 59.9 14.3 116 118-264 24-145 (145)
143 PF12895 Apc3: Anaphase-promot 98.2 7E-06 1.5E-10 58.7 7.7 77 214-295 2-84 (84)
144 PRK10153 DNA-binding transcrip 98.2 6.2E-05 1.3E-09 72.2 16.1 143 96-267 334-483 (517)
145 COG4235 Cytochrome c biogenesi 98.2 5.2E-05 1.1E-09 65.9 13.9 106 121-230 138-256 (287)
146 PRK10866 outer membrane biogen 98.2 0.0005 1.1E-08 59.6 20.2 174 64-263 31-238 (243)
147 PF12688 TPR_5: Tetratrico pep 98.2 3.6E-05 7.9E-10 58.7 11.4 94 197-298 1-104 (120)
148 KOG1586 Protein required for f 98.2 0.00019 4.1E-09 60.0 16.3 194 118-330 27-260 (288)
149 PRK11906 transcriptional regul 98.2 0.00022 4.8E-09 65.8 18.2 150 173-326 259-430 (458)
150 KOG0553 TPR repeat-containing 98.2 5E-05 1.1E-09 65.7 13.2 97 214-314 94-196 (304)
151 PF13525 YfiO: Outer membrane 98.2 0.00043 9.3E-09 58.3 18.8 78 100-181 4-91 (203)
152 PRK10153 DNA-binding transcrip 98.2 0.00011 2.5E-09 70.4 16.5 132 167-302 335-486 (517)
153 PF13424 TPR_12: Tetratricopep 98.1 8.6E-06 1.9E-10 57.2 6.6 61 101-165 5-74 (78)
154 COG4235 Cytochrome c biogenesi 98.1 6.9E-05 1.5E-09 65.1 12.8 106 193-303 152-261 (287)
155 PF13432 TPR_16: Tetratricopep 98.1 1.2E-05 2.5E-10 54.3 6.6 60 238-301 2-63 (65)
156 KOG4340 Uncharacterized conser 98.1 7.4E-05 1.6E-09 64.6 12.6 178 75-266 20-207 (459)
157 PRK15331 chaperone protein Sic 98.1 6.5E-05 1.4E-09 59.8 11.3 90 101-194 37-134 (165)
158 KOG2376 Signal recognition par 98.1 0.0016 3.5E-08 61.3 21.3 216 66-299 13-254 (652)
159 PRK10803 tol-pal system protei 98.0 0.00015 3.2E-09 63.4 13.5 96 196-299 141-247 (263)
160 smart00671 SEL1 Sel1-like repe 98.0 1.3E-05 2.8E-10 47.1 4.7 36 101-136 1-36 (36)
161 KOG3617 WD40 and TPR repeat-co 98.0 0.001 2.2E-08 65.0 19.6 153 138-297 859-1108(1416)
162 PF13525 YfiO: Outer membrane 98.0 0.0017 3.6E-08 54.7 18.6 167 135-318 3-195 (203)
163 PF13424 TPR_12: Tetratricopep 98.0 3E-05 6.4E-10 54.4 6.7 61 233-297 5-74 (78)
164 PLN03098 LPA1 LOW PSII ACCUMUL 97.9 6.2E-05 1.3E-09 69.3 9.4 65 99-167 73-142 (453)
165 COG1729 Uncharacterized protei 97.9 0.00028 6.1E-09 60.7 12.7 100 68-171 144-251 (262)
166 PF08238 Sel1: Sel1 repeat; I 97.9 1.8E-05 4E-10 47.4 3.9 36 101-136 1-39 (39)
167 KOG4340 Uncharacterized conser 97.9 0.00051 1.1E-08 59.6 13.6 172 119-299 24-208 (459)
168 smart00671 SEL1 Sel1-like repe 97.9 3.4E-05 7.5E-10 45.2 4.5 34 198-231 2-35 (36)
169 KOG3785 Uncharacterized conser 97.8 0.002 4.4E-08 57.2 16.8 84 76-164 33-118 (557)
170 COG4785 NlpI Lipoprotein NlpI, 97.8 0.0052 1.1E-07 51.1 18.2 186 100-299 64-267 (297)
171 KOG1941 Acetylcholine receptor 97.8 0.0014 3.1E-08 58.3 15.8 188 102-297 123-359 (518)
172 PF04733 Coatomer_E: Coatomer 97.8 0.00058 1.3E-08 60.7 13.6 153 138-298 103-265 (290)
173 PF14559 TPR_19: Tetratricopep 97.8 6.4E-05 1.4E-09 51.1 6.0 60 118-177 4-67 (68)
174 PLN03098 LPA1 LOW PSII ACCUMUL 97.8 0.00026 5.7E-09 65.2 11.5 66 230-299 72-142 (453)
175 KOG2376 Signal recognition par 97.8 0.0045 9.7E-08 58.5 19.4 204 118-334 25-255 (652)
176 PF08238 Sel1: Sel1 repeat; I 97.8 4E-05 8.7E-10 45.8 4.1 34 198-231 2-38 (39)
177 KOG3617 WD40 and TPR repeat-co 97.8 0.004 8.7E-08 61.0 19.2 144 145-296 834-1049(1416)
178 KOG1070 rRNA processing protei 97.7 0.0048 1E-07 63.6 20.0 171 152-330 1512-1701(1710)
179 KOG4555 TPR repeat-containing 97.7 0.00056 1.2E-08 52.1 10.3 92 75-172 53-150 (175)
180 KOG2471 TPR repeat-containing 97.7 0.0013 2.8E-08 60.7 14.0 112 65-181 240-381 (696)
181 KOG1585 Protein required for f 97.7 0.017 3.7E-07 48.9 19.6 18 279-296 200-217 (308)
182 KOG0543 FKBP-type peptidyl-pro 97.7 0.0012 2.6E-08 59.7 13.1 89 138-229 258-354 (397)
183 KOG1586 Protein required for f 97.7 0.022 4.8E-07 48.0 19.4 139 119-266 48-224 (288)
184 PF13371 TPR_9: Tetratricopept 97.7 0.00032 7E-09 48.3 7.6 63 108-174 2-68 (73)
185 KOG0543 FKBP-type peptidyl-pro 97.6 0.001 2.3E-08 60.1 12.5 63 233-299 257-321 (397)
186 KOG3081 Vesicle coat complex C 97.6 0.029 6.3E-07 48.2 20.1 118 217-336 153-275 (299)
187 KOG1915 Cell cycle control pro 97.6 0.055 1.2E-06 50.2 25.7 245 77-333 256-537 (677)
188 KOG4555 TPR repeat-containing 97.6 0.0019 4.1E-08 49.2 11.7 87 108-198 50-148 (175)
189 COG1729 Uncharacterized protei 97.6 0.0013 2.9E-08 56.6 12.2 93 200-300 144-246 (262)
190 KOG3785 Uncharacterized conser 97.6 0.014 3.1E-07 52.0 18.7 168 118-298 35-214 (557)
191 PF13428 TPR_14: Tetratricopep 97.5 0.00019 4.1E-09 44.3 4.7 41 137-177 1-43 (44)
192 COG4700 Uncharacterized protei 97.5 0.027 5.8E-07 45.9 17.6 123 119-245 70-205 (251)
193 PF14559 TPR_19: Tetratricopep 97.5 0.00027 5.8E-09 47.9 5.5 64 76-145 2-67 (68)
194 PF09295 ChAPs: ChAPs (Chs5p-A 97.5 0.0028 6.1E-08 58.5 13.6 105 118-227 182-294 (395)
195 KOG2047 mRNA splicing factor [ 97.5 0.078 1.7E-06 51.0 22.9 180 119-306 361-587 (835)
196 COG0457 NrfG FOG: TPR repeat [ 97.5 0.042 9.2E-07 45.3 23.5 211 79-301 37-268 (291)
197 COG0457 NrfG FOG: TPR repeat [ 97.4 0.05 1.1E-06 44.8 24.9 206 119-334 37-267 (291)
198 PF09295 ChAPs: ChAPs (Chs5p-A 97.4 0.0053 1.2E-07 56.7 14.2 113 143-264 175-295 (395)
199 KOG1915 Cell cycle control pro 97.4 0.12 2.6E-06 48.1 24.6 244 78-333 154-501 (677)
200 PF13281 DUF4071: Domain of un 97.3 0.059 1.3E-06 49.3 19.0 78 100-181 140-229 (374)
201 KOG1585 Protein required for f 97.2 0.043 9.3E-07 46.6 16.3 183 100-295 30-253 (308)
202 KOG2047 mRNA splicing factor [ 97.2 0.12 2.6E-06 49.8 20.9 214 76-298 358-615 (835)
203 COG4105 ComL DNA uptake lipopr 97.2 0.12 2.7E-06 44.3 20.0 77 100-180 33-119 (254)
204 PF13371 TPR_9: Tetratricopept 97.2 0.0017 3.6E-08 44.6 6.6 52 250-301 8-61 (73)
205 PF13512 TPR_18: Tetratricopep 97.2 0.011 2.3E-07 46.2 11.3 84 65-152 10-99 (142)
206 PF06552 TOM20_plant: Plant sp 97.2 0.008 1.7E-07 48.6 10.8 31 81-113 7-37 (186)
207 PF13428 TPR_14: Tetratricopep 97.1 0.0013 2.9E-08 40.4 4.7 41 101-145 1-43 (44)
208 COG4700 Uncharacterized protei 97.1 0.061 1.3E-06 43.9 15.2 117 99-223 87-215 (251)
209 KOG2053 Mitochondrial inherita 97.1 0.39 8.4E-06 48.0 25.1 227 63-302 7-259 (932)
210 PF13431 TPR_17: Tetratricopep 97.1 0.00056 1.2E-08 39.5 2.6 31 127-157 1-33 (34)
211 KOG3081 Vesicle coat complex C 97.1 0.17 3.7E-06 43.6 22.0 153 138-297 109-269 (299)
212 PF13512 TPR_18: Tetratricopep 97.0 0.033 7.2E-07 43.5 13.1 79 99-181 8-96 (142)
213 PF00515 TPR_1: Tetratricopept 97.0 0.0013 2.8E-08 37.8 4.1 32 269-300 1-32 (34)
214 PF07719 TPR_2: Tetratricopept 97.0 0.0015 3.3E-08 37.4 4.3 32 269-300 1-32 (34)
215 KOG1070 rRNA processing protei 97.0 0.65 1.4E-05 48.8 26.4 198 125-330 1444-1661(1710)
216 PF06552 TOM20_plant: Plant sp 96.9 0.011 2.3E-07 47.9 9.3 29 122-150 8-38 (186)
217 PF07719 TPR_2: Tetratricopept 96.8 0.0032 6.9E-08 36.0 4.3 30 137-166 1-30 (34)
218 PF13431 TPR_17: Tetratricopep 96.8 0.0013 2.8E-08 38.0 2.6 30 260-289 2-33 (34)
219 PF00515 TPR_1: Tetratricopept 96.7 0.0038 8.3E-08 35.8 4.2 30 137-166 1-30 (34)
220 PF10300 DUF3808: Protein of u 96.6 0.28 6E-06 46.9 18.7 106 118-227 246-373 (468)
221 PF13176 TPR_7: Tetratricopept 96.6 0.0047 1E-07 36.1 4.0 27 139-165 1-27 (36)
222 PF13176 TPR_7: Tetratricopept 96.6 0.0041 9E-08 36.3 3.8 27 271-297 1-27 (36)
223 PF10300 DUF3808: Protein of u 96.5 0.24 5.2E-06 47.3 17.3 140 150-297 201-375 (468)
224 PF04184 ST7: ST7 protein; In 96.2 1.1 2.4E-05 42.3 21.8 104 66-180 172-306 (539)
225 PF13281 DUF4071: Domain of un 96.1 1.1 2.4E-05 41.2 19.0 163 136-299 140-335 (374)
226 PF13181 TPR_8: Tetratricopept 96.1 0.01 2.2E-07 33.9 3.5 30 270-299 2-31 (34)
227 COG4785 NlpI Lipoprotein NlpI, 96.0 0.79 1.7E-05 38.5 16.8 168 100-287 98-293 (297)
228 KOG2471 TPR repeat-containing 95.9 0.032 7E-07 51.8 7.6 126 77-208 218-380 (696)
229 PF13181 TPR_8: Tetratricopept 95.9 0.02 4.3E-07 32.6 4.3 29 138-166 2-30 (34)
230 PF09986 DUF2225: Uncharacteri 95.8 0.088 1.9E-06 44.6 9.4 84 213-300 89-196 (214)
231 PF09986 DUF2225: Uncharacteri 95.6 0.2 4.3E-06 42.5 10.9 89 118-231 90-195 (214)
232 PF05843 Suf: Suppressor of fo 95.4 0.31 6.8E-06 43.2 11.9 110 182-298 18-136 (280)
233 COG4105 ComL DNA uptake lipopr 95.3 1.7 3.8E-05 37.4 20.8 85 62-150 31-121 (254)
234 PF13174 TPR_6: Tetratricopept 95.2 0.028 6E-07 31.6 3.2 30 270-299 1-30 (33)
235 PF13174 TPR_6: Tetratricopept 95.0 0.03 6.4E-07 31.5 2.9 28 138-165 1-28 (33)
236 KOG2796 Uncharacterized conser 94.9 0.88 1.9E-05 39.4 12.3 124 118-245 190-335 (366)
237 PF13374 TPR_10: Tetratricopep 94.8 0.067 1.4E-06 31.8 4.2 29 270-298 3-31 (42)
238 PF08631 SPO22: Meiosis protei 94.7 2.9 6.2E-05 37.0 19.8 25 273-297 250-274 (278)
239 KOG4642 Chaperone-dependent E3 94.5 0.095 2.1E-06 44.4 5.6 81 214-298 23-107 (284)
240 PF13374 TPR_10: Tetratricopep 94.4 0.099 2.1E-06 31.0 4.4 29 137-165 2-30 (42)
241 KOG4234 TPR repeat-containing 94.4 0.59 1.3E-05 38.7 9.8 79 118-196 108-199 (271)
242 KOG2796 Uncharacterized conser 94.3 1.2 2.5E-05 38.6 11.8 140 182-330 194-351 (366)
243 KOG4648 Uncharacterized conser 94.3 0.3 6.6E-06 43.7 8.5 93 201-301 101-197 (536)
244 COG2976 Uncharacterized protei 94.2 1.1 2.5E-05 36.9 11.1 94 138-235 90-193 (207)
245 PF05843 Suf: Suppressor of fo 94.2 0.6 1.3E-05 41.4 10.6 75 184-265 55-135 (280)
246 smart00028 TPR Tetratricopepti 94.0 0.078 1.7E-06 28.7 3.1 30 270-299 2-31 (34)
247 COG2976 Uncharacterized protei 93.7 2.1 4.5E-05 35.4 11.7 87 173-267 93-189 (207)
248 KOG4642 Chaperone-dependent E3 93.7 0.35 7.5E-06 41.1 7.3 74 119-192 24-105 (284)
249 KOG4648 Uncharacterized conser 93.6 0.37 8E-06 43.1 7.9 93 68-166 100-194 (536)
250 KOG3616 Selective LIM binding 93.5 7.7 0.00017 38.6 16.9 48 252-299 978-1025(1636)
251 KOG0545 Aryl-hydrocarbon recep 93.3 2.2 4.8E-05 36.6 11.6 105 138-268 179-295 (329)
252 KOG2041 WD40 repeat protein [G 93.3 7.6 0.00016 38.4 16.4 95 90-191 684-822 (1189)
253 PF04184 ST7: ST7 protein; In 93.3 7.7 0.00017 36.8 16.8 133 147-297 178-323 (539)
254 KOG1914 mRNA cleavage and poly 93.2 8.2 0.00018 37.0 18.6 182 127-313 267-481 (656)
255 COG3118 Thioredoxin domain-con 93.1 5.6 0.00012 35.1 14.1 109 118-230 147-265 (304)
256 smart00028 TPR Tetratricopepti 92.7 0.14 3.1E-06 27.5 2.7 29 138-166 2-30 (34)
257 KOG4234 TPR repeat-containing 92.5 4.2 9.1E-05 33.9 11.8 86 142-231 100-198 (271)
258 TIGR03504 FimV_Cterm FimV C-te 92.5 0.7 1.5E-05 28.2 5.7 31 272-302 2-32 (44)
259 PF02259 FAT: FAT domain; Int 92.3 4.6 0.0001 36.6 13.7 168 101-275 146-347 (352)
260 PF14853 Fis1_TPR_C: Fis1 C-te 92.1 0.64 1.4E-05 29.7 5.4 45 270-314 2-48 (53)
261 PF07721 TPR_4: Tetratricopept 92.0 0.2 4.4E-06 26.7 2.6 24 138-161 2-25 (26)
262 KOG3364 Membrane protein invol 91.9 1.4 3.1E-05 34.1 7.9 85 231-316 30-120 (149)
263 KOG3824 Huntingtin interacting 91.8 0.48 1E-05 41.8 6.1 55 120-174 131-189 (472)
264 PF07721 TPR_4: Tetratricopept 91.8 0.22 4.8E-06 26.5 2.6 24 270-293 2-25 (26)
265 COG3118 Thioredoxin domain-con 91.7 9 0.00019 33.9 17.8 68 122-190 120-193 (304)
266 PF11207 DUF2989: Protein of u 91.6 0.89 1.9E-05 37.8 7.1 60 121-181 122-190 (203)
267 PF03704 BTAD: Bacterial trans 90.9 1.8 3.8E-05 33.9 8.2 59 102-164 63-123 (146)
268 KOG3824 Huntingtin interacting 90.9 0.84 1.8E-05 40.4 6.6 71 69-145 120-192 (472)
269 PF03704 BTAD: Bacterial trans 90.6 6.9 0.00015 30.5 11.7 62 232-297 61-124 (146)
270 PF08631 SPO22: Meiosis protei 90.6 12 0.00025 33.1 16.8 63 200-266 87-150 (278)
271 KOG1914 mRNA cleavage and poly 90.5 16 0.00035 35.1 14.9 145 182-332 310-464 (656)
272 PF11207 DUF2989: Protein of u 90.1 3.1 6.6E-05 34.7 8.9 85 167-260 108-201 (203)
273 PF02259 FAT: FAT domain; Int 89.8 8.6 0.00019 34.8 12.9 163 136-303 145-343 (352)
274 KOG0545 Aryl-hydrocarbon recep 89.7 12 0.00027 32.2 12.5 99 199-305 180-300 (329)
275 PF12739 TRAPPC-Trs85: ER-Golg 89.7 18 0.00039 34.0 16.1 143 140-298 211-399 (414)
276 TIGR03504 FimV_Cterm FimV C-te 89.3 0.98 2.1E-05 27.6 4.2 32 140-171 2-33 (44)
277 KOG2610 Uncharacterized conser 89.2 13 0.00029 33.6 12.6 147 71-227 109-273 (491)
278 PF04781 DUF627: Protein of un 89.2 2 4.4E-05 32.0 6.5 94 71-164 2-105 (111)
279 PF10373 EST1_DNA_bind: Est1 D 88.8 1.6 3.4E-05 38.3 7.0 58 124-181 1-62 (278)
280 PF04781 DUF627: Protein of un 88.1 7.7 0.00017 28.9 9.0 41 183-227 62-104 (111)
281 COG3898 Uncharacterized membra 87.9 22 0.00048 32.9 25.5 242 70-329 125-389 (531)
282 PF10602 RPN7: 26S proteasome 87.9 8.2 0.00018 31.6 10.2 94 196-297 35-141 (177)
283 PF12862 Apc5: Anaphase-promot 87.7 5.2 0.00011 28.8 8.0 47 252-298 13-70 (94)
284 KOG2300 Uncharacterized conser 87.4 13 0.00028 35.2 11.9 100 198-303 47-161 (629)
285 KOG0551 Hsp90 co-chaperone CNS 86.7 2.6 5.6E-05 37.8 6.8 82 214-299 94-183 (390)
286 PF09205 DUF1955: Domain of un 86.6 6 0.00013 30.7 7.8 41 135-175 118-158 (161)
287 KOG1308 Hsp70-interacting prot 86.5 0.42 9E-06 42.8 1.8 47 120-166 129-177 (377)
288 KOG3616 Selective LIM binding 86.4 29 0.00062 34.9 14.0 37 252-294 780-816 (1636)
289 PF14853 Fis1_TPR_C: Fis1 C-te 86.3 4 8.7E-05 26.0 5.8 37 138-174 2-40 (53)
290 PF10373 EST1_DNA_bind: Est1 D 86.2 2.8 6.1E-05 36.7 7.1 58 220-281 1-62 (278)
291 PF09205 DUF1955: Domain of un 85.7 9.4 0.0002 29.6 8.4 89 214-308 69-159 (161)
292 PF12862 Apc5: Anaphase-promot 85.0 8 0.00017 27.8 7.8 48 119-166 12-70 (94)
293 cd02680 MIT_calpain7_2 MIT: do 85.0 1.8 3.9E-05 29.9 4.0 34 120-166 2-35 (75)
294 PF12968 DUF3856: Domain of Un 84.7 15 0.00033 27.9 9.1 92 69-164 13-127 (144)
295 PF10602 RPN7: 26S proteasome 84.6 17 0.00036 29.8 10.4 60 101-164 36-100 (177)
296 PF12968 DUF3856: Domain of Un 84.4 16 0.00034 27.8 9.2 79 215-297 23-128 (144)
297 COG4649 Uncharacterized protei 84.2 21 0.00046 29.1 14.7 107 119-229 72-195 (221)
298 PF04053 Coatomer_WDAD: Coatom 83.8 41 0.00088 32.0 17.0 161 101-294 264-427 (443)
299 PF07720 TPR_3: Tetratricopept 83.7 2.9 6.3E-05 24.3 3.9 30 270-299 2-33 (36)
300 KOG0376 Serine-threonine phosp 83.5 1.7 3.6E-05 40.8 4.3 105 214-322 17-127 (476)
301 KOG4814 Uncharacterized conser 83.5 49 0.0011 32.7 15.8 75 118-192 367-455 (872)
302 COG4649 Uncharacterized protei 83.3 24 0.00051 28.9 14.3 109 149-265 70-195 (221)
303 KOG3783 Uncharacterized conser 83.2 45 0.00098 32.1 17.3 184 118-306 280-529 (546)
304 KOG2041 WD40 repeat protein [G 83.1 39 0.00085 33.7 13.3 41 121-164 679-719 (1189)
305 PF04910 Tcf25: Transcriptiona 82.9 39 0.00085 31.1 16.3 155 136-310 39-234 (360)
306 KOG4507 Uncharacterized conser 82.6 7.2 0.00016 37.8 8.1 77 118-194 620-705 (886)
307 KOG2300 Uncharacterized conser 82.5 46 0.001 31.7 13.8 109 118-230 22-156 (629)
308 KOG2053 Mitochondrial inherita 81.1 70 0.0015 32.8 19.4 173 119-294 23-215 (932)
309 KOG0376 Serine-threonine phosp 81.0 4.2 9.1E-05 38.2 6.0 105 68-178 7-115 (476)
310 KOG4814 Uncharacterized conser 79.8 6.5 0.00014 38.4 6.9 81 250-330 367-455 (872)
311 cd02681 MIT_calpain7_1 MIT: do 79.0 3.8 8.2E-05 28.4 3.9 30 123-165 5-34 (76)
312 COG2909 MalT ATP-dependent tra 78.3 77 0.0017 32.5 13.9 46 119-164 472-524 (894)
313 KOG1308 Hsp70-interacting prot 78.1 2.2 4.8E-05 38.3 3.1 97 214-314 127-228 (377)
314 PF04212 MIT: MIT (microtubule 76.9 4.4 9.6E-05 27.2 3.8 19 147-165 15-33 (69)
315 PF14561 TPR_20: Tetratricopep 76.6 23 0.00049 25.3 7.5 39 90-134 13-51 (90)
316 COG4976 Predicted methyltransf 76.5 7.2 0.00016 33.3 5.5 49 118-166 8-58 (287)
317 cd02679 MIT_spastin MIT: domai 76.5 6 0.00013 27.6 4.3 32 120-164 4-35 (79)
318 PF10516 SHNi-TPR: SHNi-TPR; 76.5 4.9 0.00011 23.6 3.3 29 270-298 2-30 (38)
319 PF07720 TPR_3: Tetratricopept 75.9 8.5 0.00018 22.3 4.2 27 138-164 2-30 (36)
320 PF14561 TPR_20: Tetratricopep 75.9 10 0.00022 27.2 5.6 42 125-166 8-51 (90)
321 COG2909 MalT ATP-dependent tra 75.7 1E+02 0.0022 31.7 20.4 174 119-298 429-647 (894)
322 KOG0985 Vesicle coat protein c 75.2 1.2E+02 0.0025 32.1 23.6 43 119-164 1089-1131(1666)
323 KOG3364 Membrane protein invol 74.9 34 0.00073 26.7 8.3 72 100-172 31-108 (149)
324 PF04190 DUF410: Protein of un 74.7 58 0.0013 28.5 12.7 40 182-226 74-115 (260)
325 KOG0687 26S proteasome regulat 74.4 63 0.0014 29.2 10.9 95 196-297 103-209 (393)
326 cd02683 MIT_1 MIT: domain cont 73.4 6.8 0.00015 27.2 4.0 32 121-165 3-34 (77)
327 KOG1497 COP9 signalosome, subu 72.2 65 0.0014 29.1 10.4 86 101-191 103-211 (399)
328 KOG0985 Vesicle coat protein c 71.9 1.4E+02 0.003 31.6 18.4 59 100-165 1103-1161(1666)
329 KOG4507 Uncharacterized conser 71.9 6.8 0.00015 37.9 4.8 81 252-332 622-705 (886)
330 KOG0551 Hsp90 co-chaperone CNS 71.9 23 0.00049 32.0 7.7 75 118-192 94-180 (390)
331 cd02682 MIT_AAA_Arch MIT: doma 71.0 8.5 0.00018 26.5 3.9 19 147-165 16-34 (75)
332 PRK13184 pknD serine/threonine 69.9 18 0.00039 37.7 7.7 84 143-230 481-581 (932)
333 PRK13184 pknD serine/threonine 69.8 17 0.00036 37.9 7.4 91 76-166 486-581 (932)
334 PF10516 SHNi-TPR: SHNi-TPR; 69.7 8.4 0.00018 22.6 3.2 27 139-165 3-29 (38)
335 cd02680 MIT_calpain7_2 MIT: do 69.3 9.7 0.00021 26.3 3.9 34 252-298 2-35 (75)
336 KOG4279 Serine/threonine prote 69.1 35 0.00076 34.3 8.9 52 115-166 253-316 (1226)
337 cd02681 MIT_calpain7_1 MIT: do 68.6 13 0.00029 25.7 4.5 19 279-297 16-34 (76)
338 cd02678 MIT_VPS4 MIT: domain c 68.3 10 0.00023 26.0 4.0 31 122-165 4-34 (75)
339 cd02684 MIT_2 MIT: domain cont 67.8 10 0.00023 26.1 3.9 32 121-165 3-34 (75)
340 cd02677 MIT_SNX15 MIT: domain 67.5 30 0.00065 23.8 6.2 15 283-297 20-34 (75)
341 COG3898 Uncharacterized membra 67.5 1.1E+02 0.0023 28.6 23.6 242 77-334 96-360 (531)
342 PF00244 14-3-3: 14-3-3 protei 66.8 83 0.0018 27.0 16.6 45 253-297 142-197 (236)
343 COG4976 Predicted methyltransf 66.7 12 0.00026 32.0 4.7 64 75-144 5-71 (287)
344 KOG0890 Protein kinase of the 66.0 2.4E+02 0.0051 32.7 15.1 131 169-305 1670-1840(2382)
345 KOG3783 Uncharacterized conser 65.4 38 0.00083 32.6 8.2 68 104-175 452-530 (546)
346 PF04053 Coatomer_WDAD: Coatom 65.4 1E+02 0.0022 29.3 11.3 107 100-226 320-427 (443)
347 PF10952 DUF2753: Protein of u 65.0 34 0.00073 26.2 6.3 57 105-165 5-78 (140)
348 KOG2610 Uncharacterized conser 64.6 1.1E+02 0.0025 27.8 15.2 139 119-265 117-275 (491)
349 smart00101 14_3_3 14-3-3 homol 64.3 96 0.0021 26.9 19.0 47 252-298 143-200 (244)
350 KOG0890 Protein kinase of the 63.8 2.9E+02 0.0062 32.1 22.2 230 99-332 1668-1957(2382)
351 cd02677 MIT_SNX15 MIT: domain 63.3 13 0.00027 25.7 3.6 31 122-165 4-34 (75)
352 PF04212 MIT: MIT (microtubule 62.7 43 0.00093 22.3 7.4 25 274-298 10-34 (69)
353 KOG4279 Serine/threonine prote 62.5 1.4E+02 0.003 30.4 11.5 91 100-194 200-316 (1226)
354 cd02679 MIT_spastin MIT: domai 61.7 17 0.00037 25.3 4.0 25 273-297 12-36 (79)
355 PF05053 Menin: Menin; InterP 61.2 34 0.00074 33.2 7.1 64 232-297 276-346 (618)
356 smart00745 MIT Microtubule Int 60.4 18 0.00039 24.8 4.1 32 121-165 5-36 (77)
357 PF09670 Cas_Cas02710: CRISPR- 59.8 1.1E+02 0.0023 28.6 10.2 63 69-133 135-197 (379)
358 PF12854 PPR_1: PPR repeat 59.7 22 0.00047 20.0 3.7 26 269-294 7-32 (34)
359 PF01535 PPR: PPR repeat; Int 59.5 18 0.0004 19.1 3.3 28 272-299 3-30 (31)
360 COG3629 DnrI DNA-binding trans 58.8 1E+02 0.0022 27.3 9.3 96 199-298 118-216 (280)
361 PF13041 PPR_2: PPR repeat fam 58.1 27 0.00059 21.4 4.3 30 270-299 4-33 (50)
362 cd02682 MIT_AAA_Arch MIT: doma 57.5 61 0.0013 22.4 6.5 22 277-298 14-35 (75)
363 cd02656 MIT MIT: domain contai 56.5 23 0.0005 24.1 4.1 17 149-165 18-34 (75)
364 cd02684 MIT_2 MIT: domain cont 56.1 63 0.0014 22.2 6.8 32 253-297 3-34 (75)
365 COG5187 RPN7 26S proteasome re 55.9 1.2E+02 0.0027 27.0 9.1 94 196-297 114-220 (412)
366 KOG1310 WD40 repeat protein [G 55.8 50 0.0011 31.9 7.1 89 69-160 378-468 (758)
367 KOG4521 Nuclear pore complex, 54.7 3E+02 0.0066 29.6 13.9 74 135-208 918-1010(1480)
368 PRK10941 hypothetical protein; 54.4 94 0.002 27.4 8.4 61 107-171 187-251 (269)
369 PF10345 Cohesin_load: Cohesin 54.1 2.4E+02 0.0051 28.1 19.6 73 121-193 37-127 (608)
370 PF12753 Nro1: Nuclear pore co 53.8 31 0.00067 31.9 5.4 56 252-307 333-400 (404)
371 PF07079 DUF1347: Protein of u 52.3 45 0.00098 31.5 6.2 56 68-130 465-520 (549)
372 PF04190 DUF410: Protein of un 52.3 1.6E+02 0.0035 25.7 12.7 105 149-263 2-116 (260)
373 PF12753 Nro1: Nuclear pore co 52.2 61 0.0013 30.0 7.0 54 182-235 335-396 (404)
374 TIGR00756 PPR pentatricopeptid 52.1 34 0.00074 18.3 3.7 27 273-299 4-30 (35)
375 PRK14700 recombination factor 51.0 1.1E+02 0.0023 27.4 8.2 70 137-206 123-207 (300)
376 smart00745 MIT Microtubule Int 50.7 32 0.00068 23.5 4.0 18 280-297 19-36 (77)
377 PF05053 Menin: Menin; InterP 50.1 1.1E+02 0.0024 29.8 8.6 73 91-165 267-346 (618)
378 PF13041 PPR_2: PPR repeat fam 49.1 49 0.0011 20.1 4.4 31 137-167 3-33 (50)
379 PF09613 HrpB1_HrpK: Bacterial 47.0 1.5E+02 0.0033 23.8 13.0 89 120-208 25-121 (160)
380 KOG2114 Vacuolar assembly/sort 46.7 3.5E+02 0.0076 28.0 11.9 52 75-134 344-397 (933)
381 COG5107 RNA14 Pre-mRNA 3'-end 46.3 2.7E+02 0.0059 26.6 13.6 45 136-181 301-345 (660)
382 PF10579 Rapsyn_N: Rapsyn N-te 45.8 65 0.0014 22.5 4.8 45 118-162 19-68 (80)
383 KOG1839 Uncharacterized protei 45.8 2.2E+02 0.0048 30.7 10.6 28 137-164 973-1000(1236)
384 PF11846 DUF3366: Domain of un 45.1 79 0.0017 26.0 6.3 51 250-300 124-175 (193)
385 KOG0739 AAA+-type ATPase [Post 44.8 1.2E+02 0.0026 27.3 7.4 32 120-164 6-37 (439)
386 PF11846 DUF3366: Domain of un 44.2 79 0.0017 26.0 6.2 48 119-166 125-173 (193)
387 PF10579 Rapsyn_N: Rapsyn N-te 43.8 1.1E+02 0.0024 21.4 7.8 41 140-180 9-51 (80)
388 PF07079 DUF1347: Protein of u 43.2 3.1E+02 0.0066 26.3 15.2 46 252-297 477-523 (549)
389 KOG1538 Uncharacterized conser 40.8 4E+02 0.0086 26.9 11.5 53 107-163 638-696 (1081)
390 KOG1839 Uncharacterized protei 39.3 5.3E+02 0.012 28.1 12.1 121 67-193 934-1085(1236)
391 PF15015 NYD-SP12_N: Spermatog 38.9 3.5E+02 0.0075 25.7 12.7 92 69-164 180-289 (569)
392 PF11817 Foie-gras_1: Foie gra 38.5 71 0.0015 27.6 5.2 46 120-165 153-206 (247)
393 PF11817 Foie-gras_1: Foie gra 38.1 1.9E+02 0.004 25.0 7.8 56 103-162 180-243 (247)
394 cd02683 MIT_1 MIT: domain cont 37.2 56 0.0012 22.6 3.5 32 253-297 3-34 (77)
395 KOG2581 26S proteasome regulat 36.3 3.7E+02 0.008 25.3 9.3 49 252-300 224-278 (493)
396 PF13812 PPR_3: Pentatricopept 36.2 72 0.0016 17.0 4.0 28 272-299 4-31 (34)
397 COG4259 Uncharacterized protei 35.8 92 0.002 22.9 4.4 26 136-161 71-96 (121)
398 PF14863 Alkyl_sulf_dimr: Alky 35.2 84 0.0018 24.6 4.6 30 67-96 72-101 (141)
399 KOG0292 Vesicle coat complex C 34.9 1.4E+02 0.0031 30.8 7.0 66 98-173 669-734 (1202)
400 COG4259 Uncharacterized protei 34.2 1.7E+02 0.0037 21.5 5.6 36 268-303 71-106 (121)
401 PF10345 Cohesin_load: Cohesin 34.1 4.8E+02 0.01 25.9 19.3 59 234-297 536-605 (608)
402 KOG0687 26S proteasome regulat 34.0 3.7E+02 0.008 24.5 9.0 97 233-333 104-211 (393)
403 PF08771 Rapamycin_bind: Rapam 33.9 1.4E+02 0.0031 21.7 5.4 63 69-137 17-80 (100)
404 KOG0276 Vesicle coat complex C 33.1 5.1E+02 0.011 25.9 11.6 88 60-166 608-695 (794)
405 PF09613 HrpB1_HrpK: Bacterial 32.6 2.6E+02 0.0057 22.4 14.3 101 69-176 14-117 (160)
406 KOG2114 Vacuolar assembly/sort 31.5 6.1E+02 0.013 26.3 16.5 30 137-166 368-397 (933)
407 PF12002 MgsA_C: MgsA AAA+ ATP 31.3 2.1E+02 0.0045 23.3 6.3 16 152-167 3-18 (168)
408 TIGR02561 HrpB1_HrpK type III 31.3 2.7E+02 0.0059 22.2 10.3 50 101-154 44-95 (153)
409 PRK10941 hypothetical protein; 31.0 1.4E+02 0.003 26.3 5.8 67 236-306 184-254 (269)
410 smart00386 HAT HAT (Half-A-TPR 29.3 93 0.002 16.2 3.5 15 284-298 2-16 (33)
411 KOG1497 COP9 signalosome, subu 27.2 4.8E+02 0.01 23.8 10.9 71 138-209 104-192 (399)
412 PF14863 Alkyl_sulf_dimr: Alky 26.1 3.2E+02 0.007 21.4 10.2 47 135-181 68-116 (141)
413 KOG0276 Vesicle coat complex C 26.1 4.7E+02 0.01 26.1 8.6 33 192-228 661-693 (794)
414 KOG2709 Uncharacterized conser 25.5 74 0.0016 29.7 3.1 27 271-297 24-50 (560)
415 KOG0686 COP9 signalosome, subu 25.0 3.1E+02 0.0066 25.8 6.9 86 138-227 151-255 (466)
416 PF10952 DUF2753: Protein of u 24.0 3.4E+02 0.0074 20.9 8.0 72 140-229 4-78 (140)
417 PF10255 Paf67: RNA polymerase 23.9 1.1E+02 0.0024 28.6 4.1 66 99-164 112-191 (404)
418 PF14852 Fis1_TPR_N: Fis1 N-te 22.9 1E+02 0.0022 17.7 2.3 8 236-243 4-11 (35)
419 COG5187 RPN7 26S proteasome re 22.4 4.6E+02 0.01 23.6 7.2 64 232-299 114-185 (412)
420 PF04910 Tcf25: Transcriptiona 22.3 6.2E+02 0.013 23.3 15.6 129 151-297 8-167 (360)
421 KOG0739 AAA+-type ATPase [Post 22.2 5.7E+02 0.012 23.2 7.8 14 215-228 24-37 (439)
422 KOG4521 Nuclear pore complex, 21.9 4.2E+02 0.0091 28.6 7.8 74 100-177 919-1007(1480)
423 PF15015 NYD-SP12_N: Spermatog 21.8 7E+02 0.015 23.8 10.3 34 139-172 230-263 (569)
424 COG3629 DnrI DNA-binding trans 21.7 5.7E+02 0.012 22.7 13.3 74 184-265 140-215 (280)
425 TIGR00823 EIIA-LAC phosphotran 21.3 2.5E+02 0.0054 20.5 4.7 33 132-164 12-44 (99)
426 cd00215 PTS_IIA_lac PTS_IIA, P 20.6 2.6E+02 0.0056 20.3 4.6 32 133-164 11-42 (97)
427 PHA02537 M terminase endonucle 20.6 5.5E+02 0.012 22.0 9.7 29 272-300 172-209 (230)
428 PRK11619 lytic murein transgly 20.5 8.9E+02 0.019 24.4 19.3 47 252-298 327-375 (644)
429 COG1447 CelC Phosphotransferas 20.0 3.3E+02 0.0071 20.2 5.0 34 131-164 13-46 (105)
No 1
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.93 E-value=1.9e-24 Score=197.81 Aligned_cols=244 Identities=19% Similarity=0.167 Sum_probs=170.5
Q ss_pred CChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCHH
Q 019734 77 TLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKE 154 (336)
Q Consensus 77 ~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~ 154 (336)
..|+...|+..|.+..+..|. ..+|+++||.+|.. .+.+++|+.+|.+|+.+ +++.++.+||-+|++.|+.+
T Consensus 230 ~~Gei~~aiq~y~eAvkldP~--f~dAYiNLGnV~ke----~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ld 303 (966)
T KOG4626|consen 230 AQGEIWLAIQHYEEAVKLDPN--FLDAYINLGNVYKE----ARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLD 303 (966)
T ss_pred hcchHHHHHHHHHHhhcCCCc--chHHHhhHHHHHHH----HhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHH
Confidence 345555555444444444444 56677777777766 46677777777777665 46666777777777777777
Q ss_pred HHHHHHHHHHHc--CCHHHHHHHHHHHHH----HHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHH
Q 019734 155 AAISLYRQAAVL--GDPAGQFNLGISYLQ----EEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLR 226 (336)
Q Consensus 155 ~A~~~~~~a~~~--~~~~a~~~Lg~~~~~----~~A~~~~~ka~~~--~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~ 226 (336)
-||..|+++++. +.++|+.+||.++.+ .+|+.+|.+++.. .++++++|||.+|.+ .+.+++|..+|++
T Consensus 304 lAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E----~~~~e~A~~ly~~ 379 (966)
T KOG4626|consen 304 LAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYRE----QGKIEEATRLYLK 379 (966)
T ss_pred HHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHH----hccchHHHHHHHH
Confidence 777777777654 677888888888777 7888888888765 577888888888877 6778888888888
Q ss_pred HHH--CCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhccCCHHHHHHHHHHHHHcCcHH
Q 019734 227 AAE--GGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETA 302 (336)
Q Consensus 227 a~~--~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~~~~ 302 (336)
+++ ++...++.+||.+|.. .| ++++|+.+|+.++.. ..++++.|+|..|.+.|+...|+.+|.+|+...+.-
T Consensus 380 al~v~p~~aaa~nNLa~i~kq-qg---nl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~ 455 (966)
T KOG4626|consen 380 ALEVFPEFAAAHNNLASIYKQ-QG---NLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTF 455 (966)
T ss_pred HHhhChhhhhhhhhHHHHHHh-cc---cHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHH
Confidence 765 4677778888888854 33 788888888888765 346677888888888888888888888888776654
Q ss_pred HHHHHHHHHhhcChhcHHHHHHHHHHhhcCCC
Q 019734 303 ADHVKNVILQQLSATSRDRAMLVVDSWRAMPS 334 (336)
Q Consensus 303 a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 334 (336)
|+...+....+-..+.+..|+.-.++.+++-|
T Consensus 456 AeAhsNLasi~kDsGni~~AI~sY~~aLklkP 487 (966)
T KOG4626|consen 456 AEAHSNLASIYKDSGNIPEAIQSYRTALKLKP 487 (966)
T ss_pred HHHHhhHHHHhhccCCcHHHHHHHHHHHccCC
Confidence 44433334444556677777777777666655
No 2
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.93 E-value=1.6e-24 Score=198.23 Aligned_cols=244 Identities=18% Similarity=0.096 Sum_probs=168.2
Q ss_pred ChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCHHH
Q 019734 78 LPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEA 155 (336)
Q Consensus 78 ~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~ 155 (336)
.|++.+|...|.+.++..|. .+-+|-+||-++.. .|+.-.|+.+|++|+.+ ..++|+++||.+|.+.+.+++
T Consensus 197 ~Grl~ea~~cYlkAi~~qp~--fAiawsnLg~~f~~----~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~ 270 (966)
T KOG4626|consen 197 EGRLEEAKACYLKAIETQPC--FAIAWSNLGCVFNA----QGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDR 270 (966)
T ss_pred hcccchhHHHHHHHHhhCCc--eeeeehhcchHHhh----cchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchH
Confidence 45566666666666666553 56666666666655 46777777777777766 356777777777777777777
Q ss_pred HHHHHHHHHHc--CCHHHHHHHHHHHHH----HHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHH
Q 019734 156 AISLYRQAAVL--GDPAGQFNLGISYLQ----EEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRA 227 (336)
Q Consensus 156 A~~~~~~a~~~--~~~~a~~~Lg~~~~~----~~A~~~~~ka~~~--~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a 227 (336)
|+..|.+|+.. +++.++-+||-+|.+ +.||..|+++++. ..++|+.|||..+.. .|+.++|+.+|++|
T Consensus 271 Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd----~G~V~ea~~cYnka 346 (966)
T KOG4626|consen 271 AVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKD----KGSVTEAVDCYNKA 346 (966)
T ss_pred HHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHh----ccchHHHHHHHHHH
Confidence 77777777654 566777777777766 7777777777664 577778888877776 67777888888777
Q ss_pred HH--CCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhccCCHHHHHHHHHHHHHcCcHHH
Q 019734 228 AE--GGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAA 303 (336)
Q Consensus 228 ~~--~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~~~~a 303 (336)
+. ..+++++++||.+|.. ...+++|..+|+++++- +...++.|||.+|..+|++++|+.+|++|++..+.-|
T Consensus 347 L~l~p~hadam~NLgni~~E----~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fA 422 (966)
T KOG4626|consen 347 LRLCPNHADAMNNLGNIYRE----QGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFA 422 (966)
T ss_pred HHhCCccHHHHHHHHHHHHH----hccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHH
Confidence 54 3677778888877754 22777788888877764 5567777888878778888888888888877766544
Q ss_pred HHHHHHHHhhcChhcHHHHHHHHHHhhcCCCC
Q 019734 304 DHVKNVILQQLSATSRDRAMLVVDSWRAMPSL 335 (336)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 335 (336)
..+.+.....-..++.+.|.......+..+|+
T Consensus 423 da~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt 454 (966)
T KOG4626|consen 423 DALSNMGNTYKEMGDVSAAIQCYTRAIQINPT 454 (966)
T ss_pred HHHHhcchHHHHhhhHHHHHHHHHHHHhcCcH
Confidence 44444433444455666677777777666664
No 3
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.88 E-value=8.4e-21 Score=182.49 Aligned_cols=242 Identities=28% Similarity=0.336 Sum_probs=209.3
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHhcC-CCCcCCHHHHHHHHHHHHH-------cCCHHHHHHHHHHHhcCC-----CH
Q 019734 87 VCKSWNDALRPLREAMVLLRWGKRFKHG-RGVRKNLDKALDSFLKGAA-------RGSTLAMVDAGLMYWEMD-----KK 153 (336)
Q Consensus 87 ~~~~~~~~~~~~~~~~a~~~lg~~~~~g-~g~~~~~~~A~~~~~~A~~-------~~~~~a~~~lg~~~~~~~-----~~ 153 (336)
.+..|++..++.++..+++.+|.+|..| .|+.+|+++|+.||+.++. .+++.+.+.+|.+|..+. |.
T Consensus 230 ~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~ 309 (552)
T KOG1550|consen 230 EAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDY 309 (552)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccH
Confidence 3468888888899999999999999999 8999999999999999998 789999999999999873 78
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH-------HHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCccCHHHHHHHHHH
Q 019734 154 EAAISLYRQAAVLGDPAGQFNLGISYLQ-------EEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLR 226 (336)
Q Consensus 154 ~~A~~~~~~a~~~~~~~a~~~Lg~~~~~-------~~A~~~~~ka~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~ 226 (336)
+.|+.+|.++++.|++.+++.||.+|.. .+|.+||..|+..|+..|++.++.||..|.|+..+..+|+.||++
T Consensus 310 ~~A~~~~~~aA~~g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~ 389 (552)
T KOG1550|consen 310 EKALKLYTKAAELGNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKK 389 (552)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHH
Confidence 8999999999999999999999999988 599999999999999999999999999999999999999999999
Q ss_pred HHHCCCHHHHHHHHHHHHcCCC---------------------------------------CcccHHHHHHHHHHHHHcC
Q 019734 227 AAEGGYVRAMYNTSLCYSFGEG---------------------------------------LPLSHRQARKWMKRAADCG 267 (336)
Q Consensus 227 a~~~~~~~a~~~lg~~~~~~~g---------------------------------------~~~~~~~A~~~~~~a~~~~ 267 (336)
+++.+.+.|++.++.++..+.+ +..+...+...+.++..+|
T Consensus 390 aA~~g~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g 469 (552)
T KOG1550|consen 390 AAEKGNPSAAYLLGAFYEYGVGRYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAAQG 469 (552)
T ss_pred HHHccChhhHHHHHHHHHHccccccHHHHHHHHHHHhhhhHHhhHHHHHHHhccccccccccccchhHHHHHHHHHHhcc
Confidence 9999999999999888876642 1225556666666666677
Q ss_pred CHHHHHHHHHHhhcc----CCHHHHHHHHHHHHHcCcHHHHHHHHHHHhhcChhc-HHHHHHHHHHh
Q 019734 268 HGKAQLEHGLGLFTE----GEMMKAVVYLELATRAGETAADHVKNVILQQLSATS-RDRAMLVVDSW 329 (336)
Q Consensus 268 ~~~a~~~lg~~~~~~----~~~~~A~~~~~~A~~~~~~~a~~~~~~~~~~~~~~~-~~~a~~~~~~~ 329 (336)
++.+...||.+|+.- .+++.|..+|.+|...+ ..+..+++.+.++...-. ...|+...++.
T Consensus 470 ~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~-~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~ 535 (552)
T KOG1550|consen 470 NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG-AQALFNLGYMHEHGEGIKVLHLAKRYYDQA 535 (552)
T ss_pred CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh-hHHHhhhhhHHhcCcCcchhHHHHHHHHHH
Confidence 778888999877663 48999999999999999 999999999988875543 34444444433
No 4
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=99.88 E-value=1.8e-20 Score=167.52 Aligned_cols=200 Identities=29% Similarity=0.391 Sum_probs=135.3
Q ss_pred CCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC----C
Q 019734 76 FTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWEM----D 151 (336)
Q Consensus 76 ~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~~----~ 151 (336)
+..+++..+ ..+++..+..+++.+++.+|.+|..|.|+.+|..+|+.||+.+++.+++.+++.||.+|..+ .
T Consensus 52 ~~~~~~~~a----~~~~~~a~~~~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~~~a~~~lg~~~~~G~gv~~ 127 (292)
T COG0790 52 AYPPDYAKA----LKSYEKAAELGDAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGLAEALFNLGLMYANGRGVPL 127 (292)
T ss_pred cccccHHHH----HHHHHHhhhcCChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcccHHHHHhHHHHHhcCCCccc
Confidence 455666666 46666666667788999999999999999999999999999999999999999999999885 3
Q ss_pred CHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CCCccCHHHHHHHHH
Q 019734 152 KKEAAISLYRQAAVLGDPAG---QFNLGISYLQEEAVKLLYQASIAGHVRAQYQLALCLHRG---RGVDFNLQEAARWYL 225 (336)
Q Consensus 152 ~~~~A~~~~~~a~~~~~~~a---~~~Lg~~~~~~~A~~~~~ka~~~~~~~a~~~lg~~~~~g---~g~~~~~~~A~~~~~ 225 (336)
|..+|..||.+|++.|++.+ ++.||.+| ..| .++..+...|+.+|.
T Consensus 128 d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~----------------------------~~g~~~~~~~~~~~~A~~~~~ 179 (292)
T COG0790 128 DLVKALKYYEKAAKLGNVEAALAMYRLGLAY----------------------------LSGLQALAVAYDDKKALYLYR 179 (292)
T ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHH----------------------------HcChhhhcccHHHHhHHHHHH
Confidence 77777777777777776666 55555544 444 344445555555555
Q ss_pred HHHHCCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHhhccC---------------CHHHHHH
Q 019734 226 RAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQLEHGLGLFTEG---------------EMMKAVV 290 (336)
Q Consensus 226 ~a~~~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~---------------~~~~A~~ 290 (336)
++++.+++.+++.||.+|..|.|+++|.++|..||++|++.|+..++++++ +++..| +...|..
T Consensus 180 ~aa~~~~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~ 258 (292)
T COG0790 180 KAAELGNPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGDGAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALE 258 (292)
T ss_pred HHHHhcCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHH
Confidence 555555555555555555555555555555555555555555555555555 333322 6666666
Q ss_pred HHHHHHHcCcHHHHHHHH
Q 019734 291 YLELATRAGETAADHVKN 308 (336)
Q Consensus 291 ~~~~A~~~~~~~a~~~~~ 308 (336)
|+.++...+...++..+.
T Consensus 259 ~~~~~~~~~~~~~~~~~~ 276 (292)
T COG0790 259 WLQKACELGFDNACEALR 276 (292)
T ss_pred HHHHHHHcCChhHHHHHH
Confidence 666666666666655554
No 5
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=99.87 E-value=7e-20 Score=163.72 Aligned_cols=172 Identities=28% Similarity=0.346 Sum_probs=144.7
Q ss_pred CCCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHH
Q 019734 115 RGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWEM----DKKEAAISLYRQAAVLGDPAGQFNLGISYLQEEAVKLLYQ 190 (336)
Q Consensus 115 ~g~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~~----~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~~~A~~~~~k 190 (336)
....+++..|+.+++++...+++.+++.++.+|..+ .+. .+|+.||++
T Consensus 51 ~~~~~~~~~a~~~~~~a~~~~~~~a~~~l~~~y~~g~gv~~~~----------------------------~~A~~~~~~ 102 (292)
T COG0790 51 SAYPPDYAKALKSYEKAAELGDAAALALLGQMYGAGKGVSRDK----------------------------TKAADWYRC 102 (292)
T ss_pred ccccccHHHHHHHHHHhhhcCChHHHHHHHHHHHhccCccccH----------------------------HHHHHHHHH
Confidence 345678888888888888777777777777777665 233 445566666
Q ss_pred HHHcCCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHCCCHHH---HHHHHHHHHcC---CCCcccHHHHHHHHHHHH
Q 019734 191 ASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRA---MYNTSLCYSFG---EGLPLSHRQARKWMKRAA 264 (336)
Q Consensus 191 a~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~~~~~a---~~~lg~~~~~~---~g~~~~~~~A~~~~~~a~ 264 (336)
+++.+++.++++||.+|..|.||.+|..+|..||++|++.|+..+ ++.+|.+|..| .++..+..+|..+|+++.
T Consensus 103 ~a~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa 182 (292)
T COG0790 103 AAADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAA 182 (292)
T ss_pred HhhcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHH
Confidence 667777777778888888999999999999999999999999999 99999999999 788888899999999999
Q ss_pred HcCCHHHHHHHHHHhhc----cCCHHHHHHHHHHHHHcCcHHHHHHHHHHHhhc
Q 019734 265 DCGHGKAQLEHGLGLFT----EGEMMKAVVYLELATRAGETAADHVKNVILQQL 314 (336)
Q Consensus 265 ~~~~~~a~~~lg~~~~~----~~~~~~A~~~~~~A~~~~~~~a~~~~~~~~~~~ 314 (336)
..+++.++++||.+|.. ..|+.+|+.||++|.+.|+..++..++.+....
T Consensus 183 ~~~~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~~~a~~~~~~~~~~g 236 (292)
T COG0790 183 ELGNPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGDGAACYNLGLMYLNG 236 (292)
T ss_pred HhcCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcC
Confidence 99999999999998866 349999999999999999988898888555444
No 6
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.83 E-value=6.4e-19 Score=169.50 Aligned_cols=235 Identities=26% Similarity=0.330 Sum_probs=203.4
Q ss_pred hhHHhhhHHHHH-HHHHhCCCCCHHHHHHHH------HHHhcCCCCcCC----HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 019734 79 PQLRAASLVCKS-WNDALRPLREAMVLLRWG------KRFKHGRGVRKN----LDKALDSFLKGAARGSTLAMVDAGLMY 147 (336)
Q Consensus 79 ~~~~~a~~~~~~-~~~~~~~~~~~~a~~~lg------~~~~~g~g~~~~----~~~A~~~~~~A~~~~~~~a~~~lg~~~ 147 (336)
+.++.....+.. .++..+......+.+.+| .++..|.+...+ ...|+.||+.+++.++..+.+.+|.+|
T Consensus 175 ~~v~~~~~~a~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~a~~g~~~a~~~~g~~y 254 (552)
T KOG1550|consen 175 GGVRRSEEKALSKHYNKAASSTSSDATFSLGPNAQRLQLSLEGEGNERNESGELSEAFKYYREAAKLGHSEAQYALGICY 254 (552)
T ss_pred CCccchhhHhhhhhhhhccCccccccccCCCcchhhhhccccccCcccccchhhhHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 334444444445 666666656666666667 777777776666 789999999999999999999999999
Q ss_pred hcC-----CCHHHHHHHHHHHHH-------cCCHHHHHHHHHHHHH---------HHHHHHHHHHHHcCCHHHHHHHHHH
Q 019734 148 WEM-----DKKEAAISLYRQAAV-------LGDPAGQFNLGISYLQ---------EEAVKLLYQASIAGHVRAQYQLALC 206 (336)
Q Consensus 148 ~~~-----~~~~~A~~~~~~a~~-------~~~~~a~~~Lg~~~~~---------~~A~~~~~ka~~~~~~~a~~~lg~~ 206 (336)
..+ +|++.|+.+|+.++. .+++.+.+.||.+|.. ++|+.+|.++++.+++++++.||.+
T Consensus 255 ~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~~~a~~~lg~~ 334 (552)
T KOG1550|consen 255 LAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGNPDAQYLLGVL 334 (552)
T ss_pred hhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 987 599999999999988 7899999999999998 6799999999999999999999999
Q ss_pred HhcCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHhhc-cCCH
Q 019734 207 LHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQLEHGLGLFT-EGEM 285 (336)
Q Consensus 207 ~~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~-~~~~ 285 (336)
|..|. ..+|+.+|.+||..|+..|+..|+++++.||..|.|++++..+|..||+++++.+++.+.+.++.++.- .+.+
T Consensus 335 ~~~g~-~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g~~~A~~~~~~~~~~g~~~~ 413 (552)
T KOG1550|consen 335 YETGT-KERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKGNPSAAYLLGAFYEYGVGRY 413 (552)
T ss_pred HHcCC-ccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHccChhhHHHHHHHHHHccccc
Confidence 99986 458999999999999999999999999999999999999999999999999999999999999886654 3899
Q ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHhhc
Q 019734 286 MKAVVYLELATRAGETAADHVKNVILQQL 314 (336)
Q Consensus 286 ~~A~~~~~~A~~~~~~~a~~~~~~~~~~~ 314 (336)
+.+..++......+.+.+..+...+....
T Consensus 414 ~~~~~~~~~~a~~g~~~~q~~a~~l~~~~ 442 (552)
T KOG1550|consen 414 DTALALYLYLAELGYEVAQSNAAYLLDQS 442 (552)
T ss_pred cHHHHHHHHHHHhhhhHHhhHHHHHHHhc
Confidence 99999999998888888877776666554
No 7
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.82 E-value=1.7e-17 Score=163.11 Aligned_cols=251 Identities=12% Similarity=-0.004 Sum_probs=152.0
Q ss_pred HHHHHhcCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHH
Q 019734 69 LNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLM 146 (336)
Q Consensus 69 l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~ 146 (336)
...+...+..|++++|+..|.+.++..| ++..+.++|.+|.. .+++++|+..++++++. .+..+++.+|.+
T Consensus 131 k~~G~~~~~~~~~~~Ai~~y~~al~~~p---~~~~~~n~a~~~~~----l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a 203 (615)
T TIGR00990 131 KEKGNKAYRNKDFNKAIKLYSKAIECKP---DPVYYSNRAACHNA----LGDWEKVVEDTTAALELDPDYSKALNRRANA 203 (615)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCC---chHHHHHHHHHHHH----hCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 4566778899999999999999888755 46789999999998 68999999999999987 478999999999
Q ss_pred HhcCCCHHHHHHHHHHHHHcCC----------------------------------------------------------
Q 019734 147 YWEMDKKEAAISLYRQAAVLGD---------------------------------------------------------- 168 (336)
Q Consensus 147 ~~~~~~~~~A~~~~~~a~~~~~---------------------------------------------------------- 168 (336)
|...|++++|+..|.++...+.
T Consensus 204 ~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (615)
T TIGR00990 204 YDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDS 283 (615)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcc
Confidence 9999999999876654431100
Q ss_pred -------HHHHHHHHHHHHH-------HHHHHHHHHHHHcC-----CHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHH
Q 019734 169 -------PAGQFNLGISYLQ-------EEAVKLLYQASIAG-----HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAE 229 (336)
Q Consensus 169 -------~~a~~~Lg~~~~~-------~~A~~~~~ka~~~~-----~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~ 229 (336)
..++..+|..+.. ++|+.+|+++++.+ ...+++.+|.++.. .+++++|+.+|+++++
T Consensus 284 ~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~----~g~~~eA~~~~~kal~ 359 (615)
T TIGR00990 284 NELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCL----KGKHLEALADLSKSIE 359 (615)
T ss_pred cccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHH
Confidence 0011112211110 45555555555432 33455556666555 5556666666666543
Q ss_pred C--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhccCCHHHHHHHHHHHHHcCcHHHHH
Q 019734 230 G--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADH 305 (336)
Q Consensus 230 ~--~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~~~~a~~ 305 (336)
. .+..+++.+|.++... +++++|+..|+++++. .++.+++++|.++...|++++|+.+|++++...+.....
T Consensus 360 l~P~~~~~~~~la~~~~~~----g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~ 435 (615)
T TIGR00990 360 LDPRVTQSYIKRASMNLEL----GDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFS 435 (615)
T ss_pred cCCCcHHHHHHHHHHHHHC----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHH
Confidence 2 3455555555555432 1555555555555543 345555555555555555555555555555544332222
Q ss_pred HHHHHHhhcChhcHHHHHHHHHHhhcCCC
Q 019734 306 VKNVILQQLSATSRDRAMLVVDSWRAMPS 334 (336)
Q Consensus 306 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 334 (336)
...........++.++|+..+++.++..|
T Consensus 436 ~~~la~~~~~~g~~~eA~~~~~~al~~~P 464 (615)
T TIGR00990 436 HIQLGVTQYKEGSIASSMATFRRCKKNFP 464 (615)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 22222222333444555555555544444
No 8
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.81 E-value=6.3e-17 Score=159.32 Aligned_cols=248 Identities=15% Similarity=-0.010 Sum_probs=128.0
Q ss_pred hcCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCC
Q 019734 74 ASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMD 151 (336)
Q Consensus 74 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~ 151 (336)
..+..|++++|+..+.++++..|+ ++.++..+|.++.. .+++++|+..|++++.. +++.++..+|.++...|
T Consensus 85 ~~l~~g~~~~A~~~l~~~l~~~P~--~~~a~~~la~~l~~----~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g 158 (656)
T PRK15174 85 SPLASSQPDAVLQVVNKLLAVNVC--QPEDVLLVASVLLK----SKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMD 158 (656)
T ss_pred hHhhcCCHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCC
Confidence 334456666666666666665555 55556666666555 35666666666666554 35556666666666666
Q ss_pred CHHHHHHHHHHHHHc--CCHHHHHHHH----------------------------------HHHHH----HHHHHHHHHH
Q 019734 152 KKEAAISLYRQAAVL--GDPAGQFNLG----------------------------------ISYLQ----EEAVKLLYQA 191 (336)
Q Consensus 152 ~~~~A~~~~~~a~~~--~~~~a~~~Lg----------------------------------~~~~~----~~A~~~~~ka 191 (336)
++++|+..+++++.. +++.++..++ .++.. ++|+..|+++
T Consensus 159 ~~~eA~~~~~~~~~~~P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~a 238 (656)
T PRK15174 159 KELQAISLARTQAQEVPPRGDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESA 238 (656)
T ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 666666655554322 3333332221 11111 3444444444
Q ss_pred HHc--CCHHHHHHHHHHHhcCCCCccCHHH----HHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHH
Q 019734 192 SIA--GHVRAQYQLALCLHRGRGVDFNLQE----AARWYLRAAE--GGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRA 263 (336)
Q Consensus 192 ~~~--~~~~a~~~lg~~~~~g~g~~~~~~~----A~~~~~~a~~--~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a 263 (336)
++. +++.+++++|.+|.. .+++++ |+.+|++++. +++..++..+|.++... +++++|+.+++++
T Consensus 239 l~~~p~~~~~~~~Lg~~l~~----~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~----g~~~eA~~~l~~a 310 (656)
T PRK15174 239 LARGLDGAALRRSLGLAYYQ----SGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRT----GQNEKAIPLLQQS 310 (656)
T ss_pred HhcCCCCHHHHHHHHHHHHH----cCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHH
Confidence 332 344455555555554 344442 5555555543 34555556666665432 2566666666666
Q ss_pred HHc--CCHHHHHHHHHHhhccCCHHHHHHHHHHHHHcCcHHHHHHHHHHHhhcChhcHHHHHHHHHHhhcCCCC
Q 019734 264 ADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWRAMPSL 335 (336)
Q Consensus 264 ~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 335 (336)
+.. .++.+..++|.++...|++++|+..|+++++..+..+.............++.++|...+++..+..|.
T Consensus 311 l~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~ 384 (656)
T PRK15174 311 LATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARAS 384 (656)
T ss_pred HHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChh
Confidence 553 345555666666666666666666666666544333222221122223345566666666666555543
No 9
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.80 E-value=8.9e-17 Score=158.26 Aligned_cols=256 Identities=12% Similarity=-0.056 Sum_probs=201.4
Q ss_pred ChHHHHHHHHhcCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHH
Q 019734 64 LPFDVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMV 141 (336)
Q Consensus 64 ~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~ 141 (336)
....++.-+..++..|++.+|..++...+...|+ ++++++.||.+... .+++++|+..|++++.. +++.++.
T Consensus 41 ~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~--~~~~l~~l~~~~l~----~g~~~~A~~~l~~~l~~~P~~~~a~~ 114 (656)
T PRK15174 41 NEQNIILFAIACLRKDETDVGLTLLSDRVLTAKN--GRDLLRRWVISPLA----SSQPDAVLQVVNKLLAVNVCQPEDVL 114 (656)
T ss_pred cccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCC--chhHHHHHhhhHhh----cCCHHHHHHHHHHHHHhCCCChHHHH
Confidence 3345566677788999999999999999999888 89999999999887 69999999999999987 6899999
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHH----HHHHHHHHHHHHc--CCHHHHHHHH---------
Q 019734 142 DAGLMYWEMDKKEAAISLYRQAAV--LGDPAGQFNLGISYLQ----EEAVKLLYQASIA--GHVRAQYQLA--------- 204 (336)
Q Consensus 142 ~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~Lg~~~~~----~~A~~~~~ka~~~--~~~~a~~~lg--------- 204 (336)
.+|.++...|++++|+..|+++++ ++++.++..+|.++.. ++|+..|++++.. +++.++..++
T Consensus 115 ~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~~l~~~g~~~ 194 (656)
T PRK15174 115 LVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCLSFLNKSRLP 194 (656)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHH
Confidence 999999999999999999999986 4789999999999988 7888888776543 3444444432
Q ss_pred -------------------------HHHhcCCCCccCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCcccHH---
Q 019734 205 -------------------------LCLHRGRGVDFNLQEAARWYLRAAE--GGYVRAMYNTSLCYSFGEGLPLSHR--- 254 (336)
Q Consensus 205 -------------------------~~~~~g~g~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~~~g~~~~~~--- 254 (336)
.++.. .+++++|+..|++++. ++++.+++++|.+|.... +++
T Consensus 195 eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~----~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G----~~~eA~ 266 (656)
T PRK15174 195 EDHDLARALLPFFALERQESAGLAVDTLCA----VGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSG----RSREAK 266 (656)
T ss_pred HHHHHHHHHHhcCCCcchhHHHHHHHHHHH----CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC----CchhhH
Confidence 23322 4677777777777754 357788888888886533 444
Q ss_pred -HHHHHHHHHHHc--CCHHHHHHHHHHhhccCCHHHHHHHHHHHHHcCc--HHHHHHHHHHHhhcChhcHHHHHHHHHHh
Q 019734 255 -QARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGE--TAADHVKNVILQQLSATSRDRAMLVVDSW 329 (336)
Q Consensus 255 -~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~~--~~a~~~~~~~~~~~~~~~~~~a~~~~~~~ 329 (336)
+|+.+|++++.. +++.++.++|.++...|++++|+.++++++...+ +.+...++.+ ....++.++|...+++.
T Consensus 267 ~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~--l~~~G~~~eA~~~l~~a 344 (656)
T PRK15174 267 LQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARA--LRQVGQYTAASDEFVQL 344 (656)
T ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH--HHHCCCHHHHHHHHHHH
Confidence 488999998874 5677888999999999999999999999988654 4444444444 34456788888888888
Q ss_pred hcCCCC
Q 019734 330 RAMPSL 335 (336)
Q Consensus 330 ~~~~~~ 335 (336)
....|.
T Consensus 345 l~~~P~ 350 (656)
T PRK15174 345 AREKGV 350 (656)
T ss_pred HHhCcc
Confidence 877765
No 10
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.80 E-value=9.5e-17 Score=157.79 Aligned_cols=244 Identities=13% Similarity=0.024 Sum_probs=159.5
Q ss_pred ChhHHhhhHHHHHHHHHhC-CCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCHH
Q 019734 78 LPQLRAASLVCKSWNDALR-PLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKE 154 (336)
Q Consensus 78 ~~~~~~a~~~~~~~~~~~~-~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~ 154 (336)
.+++.+|...+...++... ....+.+++.+|.++.. .+++++|+.+|++++.. ++..+++.+|.++...|+++
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~----~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~ 382 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCL----KGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPD 382 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHH
Confidence 3567777766666665432 12356677777777776 47788888888877765 35677777788777778888
Q ss_pred HHHHHHHHHHHc--CCHHHHHHHHHHHHH----HHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHH
Q 019734 155 AAISLYRQAAVL--GDPAGQFNLGISYLQ----EEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLR 226 (336)
Q Consensus 155 ~A~~~~~~a~~~--~~~~a~~~Lg~~~~~----~~A~~~~~ka~~~--~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~ 226 (336)
+|+..|+++++. +++.+++.+|.++.. ++|+.+|+++++. ++..+++++|.++.. .+++++|+..|++
T Consensus 383 eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~----~g~~~eA~~~~~~ 458 (615)
T TIGR00990 383 KAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYK----EGSIASSMATFRR 458 (615)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHH----CCCHHHHHHHHHH
Confidence 888888777654 567777778877776 7788888877765 466777777777776 6777788887777
Q ss_pred HHH--CCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCCH--H------HHHHHHH-HhhccCCHHHHHHHHHHH
Q 019734 227 AAE--GGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHG--K------AQLEHGL-GLFTEGEMMKAVVYLELA 295 (336)
Q Consensus 227 a~~--~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~~~~--~------a~~~lg~-~~~~~~~~~~A~~~~~~A 295 (336)
++. +.++.+++.+|.++... +++++|+..|++++...+. . ...+.+. ++...|++++|..+|+++
T Consensus 459 al~~~P~~~~~~~~lg~~~~~~----g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kA 534 (615)
T TIGR00990 459 CKKNFPEAPDVYNYYGELLLDQ----NKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKA 534 (615)
T ss_pred HHHhCCCChHHHHHHHHHHHHc----cCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 754 35677777777777542 2777777777777764321 1 1122222 233357777777777777
Q ss_pred HHcCcHHHHHHHHHHHhhcChhcHHHHHHHHHHhhcCC
Q 019734 296 TRAGETAADHVKNVILQQLSATSRDRAMLVVDSWRAMP 333 (336)
Q Consensus 296 ~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 333 (336)
+..++................++.++|...+++..+..
T Consensus 535 l~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~ 572 (615)
T TIGR00990 535 LIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELA 572 (615)
T ss_pred HhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 76654433333333333444555666666665554443
No 11
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=5.1e-17 Score=145.04 Aligned_cols=227 Identities=22% Similarity=0.181 Sum_probs=184.6
Q ss_pred CCCCChHHHHHHHHhcCCChhHHhhhHHHHHHHHHhCC-CCCHH----HHHH---------------------------H
Q 019734 60 DFASLPFDVLNKIAASFTLPQLRAASLVCKSWNDALRP-LREAM----VLLR---------------------------W 107 (336)
Q Consensus 60 ~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~----a~~~---------------------------l 107 (336)
.|+..+.-..+.+...+...++++|+..+....+..|. .++-+ ++|. +
T Consensus 257 gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiI 336 (559)
T KOG1155|consen 257 GFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCII 336 (559)
T ss_pred cCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeee
Confidence 35555544455666678899999999999888887663 22221 2221 2
Q ss_pred HHHHhcCCCCcCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHH--
Q 019734 108 GKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQ-- 181 (336)
Q Consensus 108 g~~~~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~-- 181 (336)
|..|.- .++.++|+.||++|++++ ...+|..+|.-|.+.++...|+..|++|++- .|-.|||.||.+|.-
T Consensus 337 aNYYSl----r~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~ 412 (559)
T KOG1155|consen 337 ANYYSL----RSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMK 412 (559)
T ss_pred hhHHHH----HHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhc
Confidence 222222 578999999999999984 6889999999999999999999999999876 688999999999988
Q ss_pred --HHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHCCCH--HHHHHHHHHHHcCCCCcccHHH
Q 019734 182 --EEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYV--RAMYNTSLCYSFGEGLPLSHRQ 255 (336)
Q Consensus 182 --~~A~~~~~ka~~~--~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~~~~--~a~~~lg~~~~~~~g~~~~~~~ 255 (336)
.-|+-+|++|.+. .++..+..||.||.. ..+.++|+.+|++|+..+++ .+++.||.+|.+.. +..+
T Consensus 413 Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~k----l~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~----d~~e 484 (559)
T KOG1155|consen 413 MHFYALYYFQKALELKPNDSRLWVALGECYEK----LNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELK----DLNE 484 (559)
T ss_pred chHHHHHHHHHHHhcCCCchHHHHHHHHHHHH----hccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHH----hHHH
Confidence 9999999999764 799999999999998 89999999999999988876 89999999997644 9999
Q ss_pred HHHHHHHHHHc-------CC--HHHHHHHHHHhhccCCHHHHHHHHHHHHHc
Q 019734 256 ARKWMKRAADC-------GH--GKAQLEHGLGLFTEGEMMKAVVYLELATRA 298 (336)
Q Consensus 256 A~~~~~~a~~~-------~~--~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~ 298 (336)
|.++|++.++. ++ ..+...|+..+.+.+++++|-.+..+....
T Consensus 485 Aa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~ 536 (559)
T KOG1155|consen 485 AAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG 536 (559)
T ss_pred HHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC
Confidence 99999999872 22 456788999889999999999887777665
No 12
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.78 E-value=6e-16 Score=143.80 Aligned_cols=251 Identities=15% Similarity=-0.005 Sum_probs=177.5
Q ss_pred HHHHhcCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcCC------HHHHHHH
Q 019734 70 NKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGS------TLAMVDA 143 (336)
Q Consensus 70 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~~~------~~a~~~l 143 (336)
..+......|++++|+..+.+.++..|+ ++.+++.+|.++.. .+++++|+..+++++.... ..++..+
T Consensus 40 ~~g~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~L 113 (389)
T PRK11788 40 FKGLNFLLNEQPDKAIDLFIEMLKVDPE--TVELHLALGNLFRR----RGEVDRAIRIHQNLLSRPDLTREQRLLALQEL 113 (389)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCcc--cHHHHHHHHHHHHH----cCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 3345556778888888888888877655 67788888888877 5788888888888776531 2467788
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHH----HHHHHHHHHHHHcCC-------HHHHHHHHHHHhcC
Q 019734 144 GLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQ----EEAVKLLYQASIAGH-------VRAQYQLALCLHRG 210 (336)
Q Consensus 144 g~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~----~~A~~~~~ka~~~~~-------~~a~~~lg~~~~~g 210 (336)
|.+|...|++++|+.+|.++++. .+..++..++.++.. ++|+..|+++++.+. ...+..+|.++..
T Consensus 114 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~- 192 (389)
T PRK11788 114 GQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALA- 192 (389)
T ss_pred HHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHh-
Confidence 88888888888888888888764 456777788888776 788888888776431 1234567777766
Q ss_pred CCCccCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCC---HHHHHHHHHHhhccCCH
Q 019734 211 RGVDFNLQEAARWYLRAAE--GGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGH---GKAQLEHGLGLFTEGEM 285 (336)
Q Consensus 211 ~g~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~~~---~~a~~~lg~~~~~~~~~ 285 (336)
.+++++|+.+|+++++ +.+..+++.+|.+|... +++++|+.+|+++...+. ...+..++.+|...|++
T Consensus 193 ---~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~ 265 (389)
T PRK11788 193 ---RGDLDAARALLKKALAADPQCVRASILLGDLALAQ----GDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDE 265 (389)
T ss_pred ---CCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCH
Confidence 6788888888888764 34677778888887652 278888888888876532 24456777888888888
Q ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHhhcChhcHHHHHHHHHHhhcCCCC
Q 019734 286 MKAVVYLELATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWRAMPSL 335 (336)
Q Consensus 286 ~~A~~~~~~A~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 335 (336)
++|...+++++...+..... ...+......++.++|...+.+..+..|.
T Consensus 266 ~~A~~~l~~~~~~~p~~~~~-~~la~~~~~~g~~~~A~~~l~~~l~~~P~ 314 (389)
T PRK11788 266 AEGLEFLRRALEEYPGADLL-LALAQLLEEQEGPEAAQALLREQLRRHPS 314 (389)
T ss_pred HHHHHHHHHHHHhCCCchHH-HHHHHHHHHhCCHHHHHHHHHHHHHhCcC
Confidence 88888888887754322111 23333344456677777777777666654
No 13
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.75 E-value=2.3e-15 Score=153.25 Aligned_cols=249 Identities=17% Similarity=0.079 Sum_probs=183.2
Q ss_pred HHhcCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhc
Q 019734 72 IAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWE 149 (336)
Q Consensus 72 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~ 149 (336)
+......|++++|...+..+.+..++ ++..++.+|.+|.. .+++++|+.+|++++.. ++..+++.+|.++..
T Consensus 438 ~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~ 511 (899)
T TIGR02917 438 ILSYLRSGQFDKALAAAKKLEKKQPD--NASLHNLLGAIYLG----KGDLAKAREAFEKALSIEPDFFPAAANLARIDIQ 511 (899)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCC--CcHHHHHHHHHHHh----CCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Confidence 33445667777777777777766554 67788888888887 58888999999988875 577888888888888
Q ss_pred CCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHH----HHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHH
Q 019734 150 MDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQ----EEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAA 221 (336)
Q Consensus 150 ~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~----~~A~~~~~ka~~~--~~~~a~~~lg~~~~~g~g~~~~~~~A~ 221 (336)
.|++++|+..|+++++. ++..++..++.++.. ++|+.+|+++++. ++...++.++.+|.. .+++++|+
T Consensus 512 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~ 587 (899)
T TIGR02917 512 EGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLG----KGQLKKAL 587 (899)
T ss_pred CCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHH----CCCHHHHH
Confidence 88999999998888754 677888888888877 8888888888654 456777788888876 67888888
Q ss_pred HHHHHHHH--CCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhccCCHHHHHHHHHHHHH
Q 019734 222 RWYLRAAE--GGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATR 297 (336)
Q Consensus 222 ~~~~~a~~--~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~ 297 (336)
.+++++++ +.+...+..+|.+|... +++++|+.+|+++++. .++.++..+|.++...|++++|..+|++++.
T Consensus 588 ~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 663 (899)
T TIGR02917 588 AILNEAADAAPDSPEAWLMLGRAQLAA----GDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALE 663 (899)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 88888765 35677888888888653 2888888888888764 4567778888888888888888888888887
Q ss_pred cCcHHHHHHHHHHHhhcChhcHHHHHHHHHHhhcCCC
Q 019734 298 AGETAADHVKNVILQQLSATSRDRAMLVVDSWRAMPS 334 (336)
Q Consensus 298 ~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 334 (336)
..+................++.++|..+++.+....|
T Consensus 664 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 700 (899)
T TIGR02917 664 LKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHP 700 (899)
T ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc
Confidence 6544333333333333444556666666666655444
No 14
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.75 E-value=9.8e-16 Score=160.22 Aligned_cols=247 Identities=15% Similarity=0.058 Sum_probs=182.9
Q ss_pred HHHhcCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHH--
Q 019734 71 KIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLM-- 146 (336)
Q Consensus 71 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~-- 146 (336)
.+...+..|++++|+..+.+.++..|+ ++.+++.||.+|.. .+++++|+.+|+++++. ++..++..++.+
T Consensus 357 ~g~~~~~~g~~~eA~~~~~~Al~~~P~--~~~a~~~Lg~~~~~----~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~ 430 (1157)
T PRK11447 357 QGDAALKANNLAQAERLYQQARQVDNT--DSYAVLGLGDVAMA----RKDYAAAERYYQQALRMDPGNTNAVRGLANLYR 430 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 344556788999999999999988776 78899999999998 68999999999999876 455555555444
Q ss_pred ----------------------------------------HhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHH---
Q 019734 147 ----------------------------------------YWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQ--- 181 (336)
Q Consensus 147 ----------------------------------------~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~--- 181 (336)
+...|++++|+.+|+++++. +++.+++.||.+|..
T Consensus 431 ~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~ 510 (1157)
T PRK11447 431 QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQ 510 (1157)
T ss_pred hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 44568888888888888754 678888999998888
Q ss_pred -HHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHH-------------------------------
Q 019734 182 -EEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRA------------------------------- 227 (336)
Q Consensus 182 -~~A~~~~~ka~~~--~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a------------------------------- 227 (336)
++|+..|+++++. +++.+.+.+|.++.. .++.++|+.+++++
T Consensus 511 ~~~A~~~l~~al~~~P~~~~~~~a~al~l~~----~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~ 586 (1157)
T PRK11447 511 RSQADALMRRLAQQKPNDPEQVYAYGLYLSG----SDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDS 586 (1157)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHC
Confidence 8899999888764 577777777766554 45555555555432
Q ss_pred -----------HHCCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhccCCHHHHHHHHHH
Q 019734 228 -----------AEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLEL 294 (336)
Q Consensus 228 -----------~~~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~ 294 (336)
..+.++..++.+|.+|... +++++|+..|++++.. +++.++++++.+|...|++++|...|++
T Consensus 587 G~~~eA~~~l~~~p~~~~~~~~La~~~~~~----g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ 662 (1157)
T PRK11447 587 GKEAEAEALLRQQPPSTRIDLTLADWAQQR----GDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAK 662 (1157)
T ss_pred CCHHHHHHHHHhCCCCchHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 1234566777788888653 3888888888888864 6678888888888888888888888888
Q ss_pred HHHcC--cHHHHHHHHHHHhhcChhcHHHHHHHHHHhhcCC
Q 019734 295 ATRAG--ETAADHVKNVILQQLSATSRDRAMLVVDSWRAMP 333 (336)
Q Consensus 295 A~~~~--~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 333 (336)
++... +......++.++. ..++.++|.+.+++++...
T Consensus 663 ll~~~p~~~~~~~~la~~~~--~~g~~~eA~~~~~~al~~~ 701 (1157)
T PRK11447 663 LPATANDSLNTQRRVALAWA--ALGDTAAAQRTFNRLIPQA 701 (1157)
T ss_pred HhccCCCChHHHHHHHHHHH--hCCCHHHHHHHHHHHhhhC
Confidence 87663 3444444444443 4566777888877777654
No 15
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.75 E-value=1e-15 Score=155.78 Aligned_cols=221 Identities=16% Similarity=0.047 Sum_probs=147.7
Q ss_pred ChHHHHHHHHhcCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcC--CHHHHH
Q 019734 64 LPFDVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMV 141 (336)
Q Consensus 64 ~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~ 141 (336)
.+...+..+...+..|++++|+..+.+.++..|+ ++.+++.+|.+|.. .+++++|+.+|++++..+ +.....
T Consensus 21 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~ 94 (899)
T TIGR02917 21 SPESLIEAAKSYLQKNKYKAAIIQLKNALQKDPN--DAEARFLLGKIYLA----LGDYAAAEKELRKALSLGYPKNQVLP 94 (899)
T ss_pred CHHHHHHHHHHHHHcCChHhHHHHHHHHHHhCCC--CHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCChhhhHH
Confidence 3456788888999999999999999999998877 88999999999999 589999999999998763 455566
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHH----HHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCC
Q 019734 142 DAGLMYWEMDKKEAAISLYRQAAV---LGDPAGQFNLGISYLQ----EEAVKLLYQASIA--GHVRAQYQLALCLHRGRG 212 (336)
Q Consensus 142 ~lg~~~~~~~~~~~A~~~~~~a~~---~~~~~a~~~Lg~~~~~----~~A~~~~~ka~~~--~~~~a~~~lg~~~~~g~g 212 (336)
.+|.++...|++++|+..+.++.. ...+.+++.+|.++.. ++|+.+|+++++. +++.+++.+|.++..
T Consensus 95 ~~a~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~--- 171 (899)
T TIGR02917 95 LLARAYLLQGKFQQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALA--- 171 (899)
T ss_pred HHHHHHHHCCCHHHHHHhhcccccCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHH---
Confidence 666666666666666666655431 1344555666666655 6666666666543 355566666666655
Q ss_pred CccCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhccCCHHHH
Q 019734 213 VDFNLQEAARWYLRAAE--GGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKA 288 (336)
Q Consensus 213 ~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~A 288 (336)
.+++++|+.++++++. +.+..+++.+|.++... +++++|..+|++++.. +++..++.++.++...|++++|
T Consensus 172 -~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~----g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A 246 (899)
T TIGR02917 172 -ENRFDEARALIDEVLTADPGNVDALLLKGDLLLSL----GNIELALAAYRKAIALRPNNPAVLLALATILIEAGEFEEA 246 (899)
T ss_pred -CCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhc----CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 5566666666666543 24555566666665432 2666666666666553 3345555555555555666666
Q ss_pred HHHHHHHHHc
Q 019734 289 VVYLELATRA 298 (336)
Q Consensus 289 ~~~~~~A~~~ 298 (336)
...++++++.
T Consensus 247 ~~~~~~~~~~ 256 (899)
T TIGR02917 247 EKHADALLKK 256 (899)
T ss_pred HHHHHHHHHh
Confidence 6555555544
No 16
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.75 E-value=2.4e-15 Score=157.30 Aligned_cols=254 Identities=18% Similarity=0.075 Sum_probs=151.3
Q ss_pred HHhcCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcC--CHH-----------
Q 019734 72 IAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STL----------- 138 (336)
Q Consensus 72 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~~--~~~----------- 138 (336)
+..++..|++++|+..+.+.++..|+ ++.+++.||.+|.. .+++++|+.+|+++++.. +..
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~~P~--~~~a~~~Lg~~~~~----~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~ 349 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRANPK--DSEALGALGQAYSQ----QGDRARAVAQFEKALALDPHSSNRDKWESLLKVN 349 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhh
Confidence 44556677777777777777777665 67777777777777 477777777777777642 111
Q ss_pred ---HHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHH----HHHHHHHHHHHHc--CCHHHHHHHHHHH
Q 019734 139 ---AMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQ----EEAVKLLYQASIA--GHVRAQYQLALCL 207 (336)
Q Consensus 139 ---a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~----~~A~~~~~ka~~~--~~~~a~~~lg~~~ 207 (336)
....+|.++...|++++|+..|+++++. +++.+++.||.++.. ++|+.+|+++++. ++..++..++.+|
T Consensus 350 ~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~ 429 (1157)
T PRK11447 350 RYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLY 429 (1157)
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 1123455555556666666666665543 455555556666555 5555666555543 3444444444433
Q ss_pred hcCC--------------------------------------CCccCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCC
Q 019734 208 HRGR--------------------------------------GVDFNLQEAARWYLRAAE--GGYVRAMYNTSLCYSFGE 247 (336)
Q Consensus 208 ~~g~--------------------------------------g~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~~~ 247 (336)
..+. -..+++++|+.+|++++. ++++.+++.+|.+|...
T Consensus 430 ~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~- 508 (1157)
T PRK11447 430 RQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQA- 508 (1157)
T ss_pred HhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-
Confidence 2100 013555566666665543 34555555555555432
Q ss_pred CCcccHHHHHHHHHHHHHc-------------------------------------------------------------
Q 019734 248 GLPLSHRQARKWMKRAADC------------------------------------------------------------- 266 (336)
Q Consensus 248 g~~~~~~~A~~~~~~a~~~------------------------------------------------------------- 266 (336)
+++++|+..|++++..
T Consensus 509 ---G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~ 585 (1157)
T PRK11447 509 ---GQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRD 585 (1157)
T ss_pred ---CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHH
Confidence 1555555555555432
Q ss_pred ---------------CCHHHHHHHHHHhhccCCHHHHHHHHHHHHHcCcHHHHHHHHHHHhhcChhcHHHHHHHHHHhhc
Q 019734 267 ---------------GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWRA 331 (336)
Q Consensus 267 ---------------~~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 331 (336)
.++...+.||.++.+.|++++|+..|+++++..+.+....+.........++.++|++.++++.+
T Consensus 586 ~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~ 665 (1157)
T PRK11447 586 SGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPA 665 (1157)
T ss_pred CCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 22334567788888888999999999998887544444444444445556778888888888877
Q ss_pred CCCC
Q 019734 332 MPSL 335 (336)
Q Consensus 332 ~~~~ 335 (336)
..|.
T Consensus 666 ~~p~ 669 (1157)
T PRK11447 666 TAND 669 (1157)
T ss_pred cCCC
Confidence 6653
No 17
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.72 E-value=1e-14 Score=147.72 Aligned_cols=237 Identities=14% Similarity=-0.056 Sum_probs=183.7
Q ss_pred hhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHhcCCCHHHHH
Q 019734 79 PQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR-GSTLAMVDAGLMYWEMDKKEAAI 157 (336)
Q Consensus 79 ~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~-~~~~a~~~lg~~~~~~~~~~~A~ 157 (336)
++..+|+..+.......|+ ......+|.++.. .+++++|+.+|++++.. ....+++.+|.++...|++++|+
T Consensus 490 ~~~~eAi~a~~~Al~~~Pd---~~~~L~lA~al~~----~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~ 562 (987)
T PRK09782 490 TLPGVALYAWLQAEQRQPD---AWQHRAVAYQAYQ----VEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARD 562 (987)
T ss_pred CCcHHHHHHHHHHHHhCCc---hHHHHHHHHHHHH----CCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHH
Confidence 6777888878888777654 2345556666555 47999999999998765 34566788899999999999999
Q ss_pred HHHHHHHHc--CCHHHHHHHHHHHHH----HHHHHHHHHHHHcC-CHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHH-
Q 019734 158 SLYRQAAVL--GDPAGQFNLGISYLQ----EEAVKLLYQASIAG-HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAE- 229 (336)
Q Consensus 158 ~~~~~a~~~--~~~~a~~~Lg~~~~~----~~A~~~~~ka~~~~-~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~- 229 (336)
.+|+++++. .+......++..... ++|+.+|+++++.. ++.+++++|.++.. .+++++|+.+|++++.
T Consensus 563 ~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~l~~----lG~~deA~~~l~~AL~l 638 (987)
T PRK09782 563 RWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPSANAYVARATIYRQ----RHNVPAAVSDLRAALEL 638 (987)
T ss_pred HHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHh
Confidence 999999876 345555555555533 99999999998753 48889999999988 8999999999999865
Q ss_pred -CCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhccCCHHHHHHHHHHHHHcCcHHHHHH
Q 019734 230 -GGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHV 306 (336)
Q Consensus 230 -~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~~~~a~~~ 306 (336)
++++.++.++|.++... +++++|+..|+++++. +++.+++++|.++...|++++|..+|+++++..+..+...
T Consensus 639 ~Pd~~~a~~nLG~aL~~~----G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~ 714 (987)
T PRK09782 639 EPNNSNYQAALGYALWDS----GDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALIT 714 (987)
T ss_pred CCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhh
Confidence 57899999999988653 3899999999999874 6788899999999999999999999999998877666655
Q ss_pred HHHHHhhcChhcHHHHHHHHHHhh
Q 019734 307 KNVILQQLSATSRDRAMLVVDSWR 330 (336)
Q Consensus 307 ~~~~~~~~~~~~~~~a~~~~~~~~ 330 (336)
...........+...+.+.+....
T Consensus 715 ~~~g~~~~~~~~~~~a~~~~~r~~ 738 (987)
T PRK09782 715 PLTPEQNQQRFNFRRLHEEVGRRW 738 (987)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHh
Confidence 555544445555666666444433
No 18
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.71 E-value=1.9e-14 Score=145.67 Aligned_cols=244 Identities=12% Similarity=0.052 Sum_probs=192.4
Q ss_pred hhHHhhhHHHHHHHHHhCC-CC--CHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHhcCCCHH
Q 019734 79 PQLRAASLVCKSWNDALRP-LR--EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG-STLAMVDAGLMYWEMDKKE 154 (336)
Q Consensus 79 ~~~~~a~~~~~~~~~~~~~-~~--~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~~-~~~a~~~lg~~~~~~~~~~ 154 (336)
|++.++...|..+....+. .+ ++.+++.||.++.. +++.+|+..|.+++... +......+|.++...|+++
T Consensus 452 ~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-----~~~~eAi~a~~~Al~~~Pd~~~~L~lA~al~~~Gr~e 526 (987)
T PRK09782 452 SQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-----TLPGVALYAWLQAEQRQPDAWQHRAVAYQAYQVEDYA 526 (987)
T ss_pred hhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-----CCcHHHHHHHHHHHHhCCchHHHHHHHHHHHHCCCHH
Confidence 4455555555666666554 23 89999999999987 48888999898888763 3334556677778899999
Q ss_pred HHHHHHHHHHHc-CCHHHHHHHHHHHHH----HHHHHHHHHHHHcC--CHHHHHHHHHHHhcCCCCccCHHHHHHHHHHH
Q 019734 155 AAISLYRQAAVL-GDPAGQFNLGISYLQ----EEAVKLLYQASIAG--HVRAQYQLALCLHRGRGVDFNLQEAARWYLRA 227 (336)
Q Consensus 155 ~A~~~~~~a~~~-~~~~a~~~Lg~~~~~----~~A~~~~~ka~~~~--~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a 227 (336)
+|+..|++++.. ....+++.+|.++.. ++|+.+|+++++.+ +......++..... .+++++|+.+|+++
T Consensus 527 eAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~----~Gr~~eAl~~~~~A 602 (987)
T PRK09782 527 TALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYI----PGQPELALNDLTRS 602 (987)
T ss_pred HHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHh----CCCHHHHHHHHHHH
Confidence 999999998765 445668889998888 99999999998864 45555556655544 58999999999999
Q ss_pred HHC-CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhccCCHHHHHHHHHHHHHcCcHHHH
Q 019734 228 AEG-GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAAD 304 (336)
Q Consensus 228 ~~~-~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~~~~a~ 304 (336)
++. .++.++.++|.++.... ++++|+.+|++++.. +++.++.++|.++...|++++|+..|++|++..+.++.
T Consensus 603 L~l~P~~~a~~~LA~~l~~lG----~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~ 678 (987)
T PRK09782 603 LNIAPSANAYVARATIYRQRH----NVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPA 678 (987)
T ss_pred HHhCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence 764 24889999999997633 999999999999985 67889999999999999999999999999997655444
Q ss_pred HHHHHHHhhcChhcHHHHHHHHHHhhcCCCC
Q 019734 305 HVKNVILQQLSATSRDRAMLVVDSWRAMPSL 335 (336)
Q Consensus 305 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 335 (336)
............++.+.|+..+++.+...|.
T Consensus 679 a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~ 709 (987)
T PRK09782 679 LIRQLAYVNQRLDDMAATQHYARLVIDDIDN 709 (987)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 4444444556677788999999999887774
No 19
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.70 E-value=2.2e-14 Score=128.20 Aligned_cols=218 Identities=15% Similarity=0.016 Sum_probs=158.7
Q ss_pred hhHHhhhHHHHHHHHHhC--CCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCHH
Q 019734 79 PQLRAASLVCKSWNDALR--PLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKE 154 (336)
Q Consensus 79 ~~~~~a~~~~~~~~~~~~--~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~ 154 (336)
+..+.++..+.+.+...+ +...+..++.+|.+|.. .++.++|+..|+++++. +++.+++.+|.++...|+++
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~----~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~ 115 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDS----LGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFD 115 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHH
Confidence 445555555555665333 22457889999999988 58999999999999987 58999999999999999999
Q ss_pred HHHHHHHHHHHc--CCHHHHHHHHHHHHH----HHHHHHHHHHHHcCCHHHHHHHHH-HHhcCCCCccCHHHHHHHHHHH
Q 019734 155 AAISLYRQAAVL--GDPAGQFNLGISYLQ----EEAVKLLYQASIAGHVRAQYQLAL-CLHRGRGVDFNLQEAARWYLRA 227 (336)
Q Consensus 155 ~A~~~~~~a~~~--~~~~a~~~Lg~~~~~----~~A~~~~~ka~~~~~~~a~~~lg~-~~~~g~g~~~~~~~A~~~~~~a 227 (336)
+|+..|+++++. ++..+++++|.++.. ++|+..|+++++.+....+..+.. ++.. .+++++|+..|.++
T Consensus 116 ~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~l~~~----~~~~~~A~~~l~~~ 191 (296)
T PRK11189 116 AAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALWLYLAES----KLDPKQAKENLKQR 191 (296)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHc----cCCHHHHHHHHHHH
Confidence 999999999865 789999999999987 999999999988753222222222 2223 57899999999887
Q ss_pred HHCCCHHHHH-HHHHHHHcCCCCcccHHHHHHHHHHHH----H--cCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHcCc
Q 019734 228 AEGGYVRAMY-NTSLCYSFGEGLPLSHRQARKWMKRAA----D--CGHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGE 300 (336)
Q Consensus 228 ~~~~~~~a~~-~lg~~~~~~~g~~~~~~~A~~~~~~a~----~--~~~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~~ 300 (336)
+...++..+. .+..++ .|.. +..+++..+..+. + ....+++++||.++...|++++|+.+|++|++.++
T Consensus 192 ~~~~~~~~~~~~~~~~~-lg~~---~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 192 YEKLDKEQWGWNIVEFY-LGKI---SEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred HhhCCccccHHHHHHHH-ccCC---CHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 7654444332 233333 2221 3334444444322 2 23467899999999999999999999999999875
Q ss_pred H-HHHHHHH
Q 019734 301 T-AADHVKN 308 (336)
Q Consensus 301 ~-~a~~~~~ 308 (336)
+ ..++...
T Consensus 268 ~~~~e~~~~ 276 (296)
T PRK11189 268 YNFVEHRYA 276 (296)
T ss_pred chHHHHHHH
Confidence 4 3333333
No 20
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.70 E-value=6.5e-16 Score=143.62 Aligned_cols=224 Identities=15% Similarity=0.043 Sum_probs=165.5
Q ss_pred HHHHHhcCCChhHHhhhHHHHHHHHHhCC--------------------------------CCCHHHHHHHHHHHhcCCC
Q 019734 69 LNKIAASFTLPQLRAASLVCKSWNDALRP--------------------------------LREAMVLLRWGKRFKHGRG 116 (336)
Q Consensus 69 l~~~~~~~~~~~~~~a~~~~~~~~~~~~~--------------------------------~~~~~a~~~lg~~~~~g~g 116 (336)
.+.+..+|+.++|+++..++..+-+..|- ...|+.|-.+|.||-.
T Consensus 357 ~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSL--- 433 (638)
T KOG1126|consen 357 SQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSL--- 433 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhh---
Confidence 44556678889999888777655443221 1266777778888777
Q ss_pred CcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHH----HHHHHHH
Q 019734 117 VRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQ----EEAVKLL 188 (336)
Q Consensus 117 ~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~----~~A~~~~ 188 (336)
++|++.|+++|++|+++ +.+.|+..+|.-+....++|+|..+|++|+.. .+..|||.||.+|+. +.|.-+|
T Consensus 434 -Qkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~f 512 (638)
T KOG1126|consen 434 -QKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHF 512 (638)
T ss_pred -hhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHH
Confidence 57888888888888877 36777778888777778888888888888744 677888888888877 7888888
Q ss_pred HHHHHcC--CHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHH
Q 019734 189 YQASIAG--HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAE--GGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAA 264 (336)
Q Consensus 189 ~ka~~~~--~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~ 264 (336)
+||++.+ +......+|.++.. .++.++|+.+|++|+. ..++...+..|.++.... ++++|+.-+++..
T Consensus 513 qkA~~INP~nsvi~~~~g~~~~~----~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~----~~~eal~~LEeLk 584 (638)
T KOG1126|consen 513 QKAVEINPSNSVILCHIGRIQHQ----LKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLG----RYVEALQELEELK 584 (638)
T ss_pred HhhhcCCccchhHHhhhhHHHHH----hhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhc----chHHHHHHHHHHH
Confidence 8887654 56667778888877 7788888888888854 467777888888775322 7888888887775
Q ss_pred H--cCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHcCcHHHH
Q 019734 265 D--CGHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAAD 304 (336)
Q Consensus 265 ~--~~~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~~~~a~ 304 (336)
+ ..+...++-||.+|...|+.+.|+..|.-|.+.++..+.
T Consensus 585 ~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 585 ELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred HhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 5 356667788888888888888888888888877665444
No 21
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.69 E-value=2.7e-15 Score=139.60 Aligned_cols=233 Identities=17% Similarity=0.093 Sum_probs=187.7
Q ss_pred HHHhcCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHH-----------------
Q 019734 71 KIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAA----------------- 133 (336)
Q Consensus 71 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~----------------- 133 (336)
.+......-+..+|+.++.+.-+...+ ....+..+|..|+. ..++++|..+|+.+-+
T Consensus 325 ~~~~~~s~y~~~~A~~~~~klp~h~~n--t~wvl~q~GrayFE----l~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LW 398 (638)
T KOG1126|consen 325 EGYRSLSQYNCREALNLFEKLPSHHYN--TGWVLSQLGRAYFE----LIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLW 398 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHhcCC--chHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhccccccchhHHHHHHH
Confidence 333444556677888777775555444 45888889999999 6899999999976621
Q ss_pred -------------------cCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHH----HHHHHHH
Q 019734 134 -------------------RGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQ----EEAVKLL 188 (336)
Q Consensus 134 -------------------~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~----~~A~~~~ 188 (336)
...|++|..+|.+|--++|.+.|+++|++|++. +++-|+..+|.=+.. ++|..+|
T Consensus 399 HLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~f 478 (638)
T KOG1126|consen 399 HLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSF 478 (638)
T ss_pred HHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHH
Confidence 135789999999999999999999999999866 678888888887766 9999999
Q ss_pred HHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHH
Q 019734 189 YQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAA 264 (336)
Q Consensus 189 ~ka~~~--~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~ 264 (336)
++|+.. .+..|||-||.+|.. .+.++.|..+|++|++. .+...+..+|.++.+ .++.++|+..|++|+
T Consensus 479 r~Al~~~~rhYnAwYGlG~vy~K----qek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~----~k~~d~AL~~~~~A~ 550 (638)
T KOG1126|consen 479 RKALGVDPRHYNAWYGLGTVYLK----QEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQ----LKRKDKALQLYEKAI 550 (638)
T ss_pred HhhhcCCchhhHHHHhhhhheec----cchhhHHHHHHHhhhcCCccchhHHhhhhHHHHH----hhhhhHHHHHHHHHH
Confidence 999876 488999999999998 89999999999999765 566778889999876 338999999999998
Q ss_pred Hc--CCHHHHHHHHHHhhccCCHHHHHHHHHHHHHcCcH--HHHHHHHHHHhhcChh
Q 019734 265 DC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGET--AADHVKNVILQQLSAT 317 (336)
Q Consensus 265 ~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~~~--~a~~~~~~~~~~~~~~ 317 (336)
.. .++-..|.-|.+++..+++++|...+++..+.-+. ...+.++.++..+...
T Consensus 551 ~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~ 607 (638)
T KOG1126|consen 551 HLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNT 607 (638)
T ss_pred hcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccc
Confidence 76 45677799999999999999999999998876544 4555666666665443
No 22
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.69 E-value=4.3e-14 Score=131.38 Aligned_cols=252 Identities=16% Similarity=0.055 Sum_probs=191.7
Q ss_pred HHHHHHHhcCCChhHHhhhHHHHHHHHHhCCC--CCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHH
Q 019734 67 DVLNKIAASFTLPQLRAASLVCKSWNDALRPL--REAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVD 142 (336)
Q Consensus 67 ~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~ 142 (336)
.....+..++..|++++|...+....+..... ....++..||.+|.. .+++++|+.+|+++.+. .+..++..
T Consensus 71 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~----~g~~~~A~~~~~~~l~~~~~~~~~~~~ 146 (389)
T PRK11788 71 LHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLK----AGLLDRAEELFLQLVDEGDFAEGALQQ 146 (389)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHcCCcchHHHHHH
Confidence 44555666678999999998888777643211 123678899999988 58999999999999975 46788999
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHcC--C-----HHHHHHHHHHHHH----HHHHHHHHHHHHc--CCHHHHHHHHHHHhc
Q 019734 143 AGLMYWEMDKKEAAISLYRQAAVLG--D-----PAGQFNLGISYLQ----EEAVKLLYQASIA--GHVRAQYQLALCLHR 209 (336)
Q Consensus 143 lg~~~~~~~~~~~A~~~~~~a~~~~--~-----~~a~~~Lg~~~~~----~~A~~~~~ka~~~--~~~~a~~~lg~~~~~ 209 (336)
++.++...|++++|+..|+++++.+ + ...+..+|.++.. ++|+.+|+++++. +...+++.+|.+|..
T Consensus 147 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 226 (389)
T PRK11788 147 LLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALA 226 (389)
T ss_pred HHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHH
Confidence 9999999999999999999998753 1 2245678888876 9999999999875 478899999999998
Q ss_pred CCCCccCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcC-CHHHHHHHHHHhhccCCH
Q 019734 210 GRGVDFNLQEAARWYLRAAEGGY---VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCG-HGKAQLEHGLGLFTEGEM 285 (336)
Q Consensus 210 g~g~~~~~~~A~~~~~~a~~~~~---~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~~-~~~a~~~lg~~~~~~~~~ 285 (336)
.+++++|+.+|+++.+.+. ..++..++.+|... +++++|+.+++++.... +......++.++...|++
T Consensus 227 ----~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~----g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~ 298 (389)
T PRK11788 227 ----QGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQAL----GDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGP 298 (389)
T ss_pred ----CCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCH
Confidence 8999999999999986532 35677888888653 39999999999998752 234458899999999999
Q ss_pred HHHHHHHHHHHHcCcHHHHHH--HHHHHhhcChhcHHHHHHHHHHhh
Q 019734 286 MKAVVYLELATRAGETAADHV--KNVILQQLSATSRDRAMLVVDSWR 330 (336)
Q Consensus 286 ~~A~~~~~~A~~~~~~~a~~~--~~~~~~~~~~~~~~~a~~~~~~~~ 330 (336)
++|..+|+++++..+...... +......-..++.+++...++++.
T Consensus 299 ~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~ 345 (389)
T PRK11788 299 EAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLV 345 (389)
T ss_pred HHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHH
Confidence 999999999998865443322 333222111334555555444443
No 23
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.69 E-value=6.8e-15 Score=131.33 Aligned_cols=224 Identities=16% Similarity=0.101 Sum_probs=154.6
Q ss_pred HHHHHhcCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcC--CHHHHHHHHHH
Q 019734 69 LNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLM 146 (336)
Q Consensus 69 l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~ 146 (336)
+.++-.++.+|+++.|+++.+-+-++......+.+-..-++.|.+| -+++..|..|-..|+..+ ++.++.+-|.+
T Consensus 423 i~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqg---gk~~~~aqqyad~aln~dryn~~a~~nkgn~ 499 (840)
T KOG2003|consen 423 INKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQG---GKDFADAQQYADIALNIDRYNAAALTNKGNI 499 (840)
T ss_pred hhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhc---ccchhHHHHHHHHHhcccccCHHHhhcCCce
Confidence 6677788999999999999888877655433444444344445544 368888888888887763 77788888888
Q ss_pred HhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHH----HHHHHHHHHHH--HcCCHHHHHHHHHHHhcCCCCccCHH
Q 019734 147 YWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQ----EEAVKLLYQAS--IAGHVRAQYQLALCLHRGRGVDFNLQ 218 (336)
Q Consensus 147 ~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~----~~A~~~~~ka~--~~~~~~a~~~lg~~~~~g~g~~~~~~ 218 (336)
-+..||+++|.++|+.|+.. ...+|+|++|..+.. ++|+.+|.|.- =.++.+.++.++.+|+. ..|..
T Consensus 500 ~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~----led~a 575 (840)
T KOG2003|consen 500 AFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYEL----LEDPA 575 (840)
T ss_pred eeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH----hhCHH
Confidence 88888888888888888866 356788888888776 88888888763 35778888888888877 77888
Q ss_pred HHHHHHHHHHH--CCCHHHHHHHHHHHHcCCC------------------------------CcccHHHHHHHHHHHHHc
Q 019734 219 EAARWYLRAAE--GGYVRAMYNTSLCYSFGEG------------------------------LPLSHRQARKWMKRAADC 266 (336)
Q Consensus 219 ~A~~~~~~a~~--~~~~~a~~~lg~~~~~~~g------------------------------~~~~~~~A~~~~~~a~~~ 266 (336)
+|++||..+.. +.++.....||.+|-+... ..+=.++|+.+|++|.-.
T Consensus 576 qaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaali 655 (840)
T KOG2003|consen 576 QAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALI 655 (840)
T ss_pred HHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhc
Confidence 88888877743 3566666666666633110 011345666666666543
Q ss_pred CC--HHHHHHHHHHhhccCCHHHHHHHHHHHHHcC
Q 019734 267 GH--GKAQLEHGLGLFTEGEMMKAVVYLELATRAG 299 (336)
Q Consensus 267 ~~--~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~ 299 (336)
.+ ..-+..++.|+.+.|+|++|+..|+..-+.-
T Consensus 656 qp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkf 690 (840)
T KOG2003|consen 656 QPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKF 690 (840)
T ss_pred CccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC
Confidence 22 3334566667777777777777777766643
No 24
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.67 E-value=4e-14 Score=121.75 Aligned_cols=219 Identities=16% Similarity=0.104 Sum_probs=190.1
Q ss_pred HHHHHHHhcCCCCcCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHH
Q 019734 105 LRWGKRFKHGRGVRKNLDKALDSFLKGAAR-GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQ 181 (336)
Q Consensus 105 ~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~-~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~ 181 (336)
..+|.||.. .+-+.+|.+.|..++.. .+++.+..|+.+|.+..+++.|+..|.+.++. ++..-....+.++..
T Consensus 227 ~Q~gkCylr----Lgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 227 QQMGKCYLR----LGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHH----hcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHH
Confidence 359999999 57899999999999987 68999999999999999999999999999987 677777778888877
Q ss_pred ----HHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCcccH
Q 019734 182 ----EEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGG--YVRAMYNTSLCYSFGEGLPLSH 253 (336)
Q Consensus 182 ----~~A~~~~~ka~~~--~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~g~~~~~ 253 (336)
+.|+++|+.+++. .+.++..-+|.-|.. .++++.|..+|++.++.| +++-+.|+|.|.+.+. .+
T Consensus 303 m~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY----~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaq----Q~ 374 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLHPINVEAIACIAVGYFY----DNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQ----QI 374 (478)
T ss_pred HHhHHHHHHHHHHHHhcCCccceeeeeeeecccc----CCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhc----ch
Confidence 9999999999887 467777667766666 589999999999999886 7999999999998755 89
Q ss_pred HHHHHHHHHHHHc-----CCHHHHHHHHHHhhccCCHHHHHHHHHHHHHcCcHHHHHHHHHHHhhcChhcHHHHHHHHHH
Q 019734 254 RQARKWMKRAADC-----GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSRDRAMLVVDS 328 (336)
Q Consensus 254 ~~A~~~~~~a~~~-----~~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~ 328 (336)
+-++..|++|+.. .-.+.+||||.+....||+..|..+|+.++..++..++.+.+...-....++++.|+.+.+.
T Consensus 375 D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~ 454 (478)
T KOG1129|consen 375 DLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNA 454 (478)
T ss_pred hhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHH
Confidence 9999999999873 22678899999999999999999999999998877777666666666778889999999999
Q ss_pred hhcCCCC
Q 019734 329 WRAMPSL 335 (336)
Q Consensus 329 ~~~~~~~ 335 (336)
..+..|-
T Consensus 455 A~s~~P~ 461 (478)
T KOG1129|consen 455 AKSVMPD 461 (478)
T ss_pred hhhhCcc
Confidence 8888774
No 25
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=1.3e-13 Score=123.51 Aligned_cols=186 Identities=17% Similarity=0.103 Sum_probs=157.5
Q ss_pred CHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcC-----CH-------------------------------HHHHHH
Q 019734 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG-----ST-------------------------------LAMVDA 143 (336)
Q Consensus 100 ~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~~-----~~-------------------------------~a~~~l 143 (336)
........|.++.. ..|+++|+..|+...+.+ +- +.+..+
T Consensus 261 ~~~i~~~~A~~~y~----~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiI 336 (559)
T KOG1155|consen 261 SMYIKTQIAAASYN----QRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCII 336 (559)
T ss_pred cHHHHHHHHHHHhh----hhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeee
Confidence 44455556777776 589999999999887642 11 122334
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHH----HHHHHHHHHHHHcC--CHHHHHHHHHHHhcCCCCcc
Q 019734 144 GLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQ----EEAVKLLYQASIAG--HVRAQYQLALCLHRGRGVDF 215 (336)
Q Consensus 144 g~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~----~~A~~~~~ka~~~~--~~~a~~~lg~~~~~g~g~~~ 215 (336)
|..|...++.++|+.+|++|+.. +...+|..+|.=|.+ ..|++.|++|++.+ +-+|||-||.+|.. .+
T Consensus 337 aNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYei----m~ 412 (559)
T KOG1155|consen 337 ANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEI----MK 412 (559)
T ss_pred hhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHH----hc
Confidence 55555568999999999999976 678999999999999 99999999999875 78999999999997 78
Q ss_pred CHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCCH--HHHHHHHHHhhccCCHHHHHHH
Q 019734 216 NLQEAARWYLRAAE--GGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHG--KAQLEHGLGLFTEGEMMKAVVY 291 (336)
Q Consensus 216 ~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~~~~--~a~~~lg~~~~~~~~~~~A~~~ 291 (336)
-..=|.-+|++|.. +.|...+..||.||.+.. +.++|+.+|++|+..++. .++..||.+|.+.++.++|..+
T Consensus 413 Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~----~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~ 488 (559)
T KOG1155|consen 413 MHFYALYYFQKALELKPNDSRLWVALGECYEKLN----RLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQY 488 (559)
T ss_pred chHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhc----cHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHH
Confidence 88999999999954 689999999999997755 999999999999998776 8899999999999999999999
Q ss_pred HHHHHH
Q 019734 292 LELATR 297 (336)
Q Consensus 292 ~~~A~~ 297 (336)
|++-++
T Consensus 489 yek~v~ 494 (559)
T KOG1155|consen 489 YEKYVE 494 (559)
T ss_pred HHHHHH
Confidence 999887
No 26
>PRK12370 invasion protein regulator; Provisional
Probab=99.66 E-value=1e-13 Score=134.44 Aligned_cols=209 Identities=15% Similarity=0.046 Sum_probs=128.1
Q ss_pred CChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhc----CC-CCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhc
Q 019734 77 TLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKH----GR-GVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWE 149 (336)
Q Consensus 77 ~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~----g~-g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~ 149 (336)
..+++.+|..++.+.++..|+ ++.++..||.+|.. |. ...+++++|+.++++|++. +++.++..+|.++..
T Consensus 273 ~~~~~~~A~~~~~~Al~ldP~--~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~ 350 (553)
T PRK12370 273 TPYSLQQALKLLTQCVNMSPN--SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTI 350 (553)
T ss_pred CHHHHHHHHHHHHHHHhcCCc--cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 345566676666666666555 56666667766542 11 1234567777777777766 466777777777777
Q ss_pred CCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHH----HHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHH
Q 019734 150 MDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQ----EEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAA 221 (336)
Q Consensus 150 ~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~----~~A~~~~~ka~~~--~~~~a~~~lg~~~~~g~g~~~~~~~A~ 221 (336)
.|++++|+..|+++++. +++.+++.+|.++.. ++|+.+|+++++. .++.+.+.++.++.. .+++++|+
T Consensus 351 ~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~----~g~~eeA~ 426 (553)
T PRK12370 351 HSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYY----HTGIDDAI 426 (553)
T ss_pred ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHh----ccCHHHHH
Confidence 77777777777776644 566777777777766 6777777777665 344444444444443 45677777
Q ss_pred HHHHHHHH---CCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhccCCHHHHHHHHHHHH
Q 019734 222 RWYLRAAE---GGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELAT 296 (336)
Q Consensus 222 ~~~~~a~~---~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~A~ 296 (336)
.++++++. ++++.++.++|.+|.. .| ++++|..++++.... ....+...|+..|...|+ +|...+++..
T Consensus 427 ~~~~~~l~~~~p~~~~~~~~la~~l~~-~G---~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~l~~ll 500 (553)
T PRK12370 427 RLGDELRSQHLQDNPILLSMQVMFLSL-KG---KHELARKLTKEISTQEITGLIAVNLLYAEYCQNSE--RALPTIREFL 500 (553)
T ss_pred HHHHHHHHhccccCHHHHHHHHHHHHh-CC---CHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHH--HHHHHHHHHH
Confidence 77777653 3456666777777643 22 777777777665443 233445566666666553 5555555543
Q ss_pred H
Q 019734 297 R 297 (336)
Q Consensus 297 ~ 297 (336)
+
T Consensus 501 ~ 501 (553)
T PRK12370 501 E 501 (553)
T ss_pred H
Confidence 3
No 27
>PRK12370 invasion protein regulator; Provisional
Probab=99.65 E-value=1.3e-13 Score=133.62 Aligned_cols=188 Identities=14% Similarity=-0.010 Sum_probs=153.8
Q ss_pred HHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhc---------CCCHHHHHHHHHHHHHc--CCH
Q 019734 103 VLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWE---------MDKKEAAISLYRQAAVL--GDP 169 (336)
Q Consensus 103 a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~---------~~~~~~A~~~~~~a~~~--~~~ 169 (336)
.+|..|..... .....++++|+.+|++|++. +++.++..+|.+|.. .+++++|+..+++|++. +++
T Consensus 260 ~~~lrg~~~~~-~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~ 338 (553)
T PRK12370 260 MVYLRGKHELN-QYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNP 338 (553)
T ss_pred HHHHHhHHHHH-ccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCH
Confidence 45556654443 23456789999999999998 478899999987753 24589999999999865 789
Q ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHC--CCHHHHHHHHH
Q 019734 170 AGQFNLGISYLQ----EEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSL 241 (336)
Q Consensus 170 ~a~~~Lg~~~~~----~~A~~~~~ka~~~--~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~ 241 (336)
.++..+|.++.. ++|+.+|++|++. +++.+++.+|.++.. .+++++|+.+|+++++. .++.+.+.++.
T Consensus 339 ~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~----~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~ 414 (553)
T PRK12370 339 QALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFM----AGQLEEALQTINECLKLDPTRAAAGITKLW 414 (553)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhcCCCChhhHHHHHH
Confidence 999999999887 9999999999876 588999999999998 89999999999999765 55556555555
Q ss_pred HHHcCCCCcccHHHHHHHHHHHHHc---CCHHHHHHHHHHhhccCCHHHHHHHHHHHHHcC
Q 019734 242 CYSFGEGLPLSHRQARKWMKRAADC---GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAG 299 (336)
Q Consensus 242 ~~~~~~g~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~ 299 (336)
++.. .| ++++|+.++++++.. +++.++.++|.+|...|++++|..++++.....
T Consensus 415 ~~~~-~g---~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~ 471 (553)
T PRK12370 415 ITYY-HT---GIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE 471 (553)
T ss_pred HHHh-cc---CHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc
Confidence 4433 23 799999999999864 467788999999999999999999999876553
No 28
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.64 E-value=2.5e-13 Score=115.95 Aligned_cols=186 Identities=18% Similarity=0.176 Sum_probs=123.9
Q ss_pred CHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHH
Q 019734 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNL 175 (336)
Q Consensus 100 ~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~L 175 (336)
.+.+++.+|.++.. .+++++|+.+|++++.. .+..++..+|.++...|++++|+.+|+++++. .++.+++++
T Consensus 30 ~~~~~~~la~~~~~----~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 105 (234)
T TIGR02521 30 AAKIRVQLALGYLE----QGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNY 105 (234)
T ss_pred HHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 45667777888777 57888888888887765 46777788888888888888888888887754 456666667
Q ss_pred HHHHHH----HHHHHHHHHHHHc----CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHc
Q 019734 176 GISYLQ----EEAVKLLYQASIA----GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSF 245 (336)
Q Consensus 176 g~~~~~----~~A~~~~~ka~~~----~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~ 245 (336)
|.++.. ++|+.+|+++++. .....++.+|.++.. .+++++|..+|++++.. ++..++..+|.++..
T Consensus 106 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 181 (234)
T TIGR02521 106 GTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALK----AGDFDKAEKYLTRALQIDPQRPESLLELAELYYL 181 (234)
T ss_pred HHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHH
Confidence 766665 6666666666543 234556666666665 56677777777776543 345666666666654
Q ss_pred CCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhccCCHHHHHHHHHHHHH
Q 019734 246 GEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATR 297 (336)
Q Consensus 246 ~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~ 297 (336)
. +++++|..++++++.. .++..+..++.++...|+.++|..+.+.+..
T Consensus 182 ~----~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 182 R----GQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred c----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 2 2677777777766653 3345555566666666777777666655543
No 29
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=99.63 E-value=1.8e-14 Score=114.01 Aligned_cols=157 Identities=23% Similarity=0.314 Sum_probs=96.1
Q ss_pred CCHHHHHHHHHHHhcCC-CCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCC-------CHHHHHHHHHHHHHcCCHH
Q 019734 99 REAMVLLRWGKRFKHGR-GVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMD-------KKEAAISLYRQAAVLGDPA 170 (336)
Q Consensus 99 ~~~~a~~~lg~~~~~g~-g~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~~~-------~~~~A~~~~~~a~~~~~~~ 170 (336)
+.+..+|.+|..++.|. |..+++..|+++|+.+++.+++.++.++|.+++.+. |.++|+.++.++.+.++.+
T Consensus 66 ~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~n~~~aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~~~~ 145 (248)
T KOG4014|consen 66 SYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACDANIPQACRYLGLLHWNGEKDRKADPDSEKAERYMTRACDLEDGE 145 (248)
T ss_pred CCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhccCCHHHHhhhhhhhccCcCCccCCCCcHHHHHHHHHhccCCCch
Confidence 44555555555555554 344555555555555555555555555555554431 3455555555555555555
Q ss_pred HHHHHHHHHHH--HHHHHHHHHHHH-cCCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC
Q 019734 171 GQFNLGISYLQ--EEAVKLLYQASI-AGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGE 247 (336)
Q Consensus 171 a~~~Lg~~~~~--~~A~~~~~ka~~-~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~ 247 (336)
++++|...|.. +++. .++- .+.+.---.+|. +.+|.++|.++--+|.+.+++.++.|+..+|..|.
T Consensus 146 aCf~LS~m~~~g~~k~~----t~ap~~g~p~~~~~~~~-------~~kDMdka~qfa~kACel~~~~aCAN~SrMyklGD 214 (248)
T KOG4014|consen 146 ACFLLSTMYMGGKEKFK----TNAPGEGKPLDRAELGS-------LSKDMDKALQFAIKACELDIPQACANVSRMYKLGD 214 (248)
T ss_pred HHHHHHHHHhccchhhc----ccCCCCCCCcchhhhhh-------hhHhHHHHHHHHHHHHhcCChHHHhhHHHHHHccC
Confidence 55555555543 2211 1100 011111111111 13889999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHHHc
Q 019734 248 GLPLSHRQARKWMKRAADC 266 (336)
Q Consensus 248 g~~~~~~~A~~~~~~a~~~ 266 (336)
|+++|.++|..+-.+|.+.
T Consensus 215 Gv~Kde~~Aekyk~rA~e~ 233 (248)
T KOG4014|consen 215 GVPKDEDQAEKYKDRAKEI 233 (248)
T ss_pred CCCccHHHHHHHHHHHHHH
Confidence 9999999999999999764
No 30
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.63 E-value=2e-13 Score=116.60 Aligned_cols=191 Identities=19% Similarity=0.129 Sum_probs=157.8
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHH----HHHHHHHHHHHHc--CCHHHHHHHHHHH
Q 019734 136 STLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQ----EEAVKLLYQASIA--GHVRAQYQLALCL 207 (336)
Q Consensus 136 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~----~~A~~~~~ka~~~--~~~~a~~~lg~~~ 207 (336)
.+.+++.+|.++...|++++|+.+++++++. +++.++..+|.++.. ++|+.+|+++++. .+..+++++|.++
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence 4678899999999999999999999999865 678999999999988 9999999999875 5788999999999
Q ss_pred hcCCCCccCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhc
Q 019734 208 HRGRGVDFNLQEAARWYLRAAEG----GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFT 281 (336)
Q Consensus 208 ~~g~g~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~ 281 (336)
.. .+++++|+.+|++++.. .....+..+|.++... +++++|..++.+++.. +++.++..+|.++..
T Consensus 110 ~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 181 (234)
T TIGR02521 110 CQ----QGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKA----GDFDKAEKYLTRALQIDPQRPESLLELAELYYL 181 (234)
T ss_pred HH----cccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHH
Confidence 88 89999999999999864 3567888999999653 3999999999999885 457788999999999
Q ss_pred cCCHHHHHHHHHHHHHcCcHHHHHHHHHHHhhcChhcHHHHHHHHHHhhcCCC
Q 019734 282 EGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWRAMPS 334 (336)
Q Consensus 282 ~~~~~~A~~~~~~A~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 334 (336)
.|++++|..++++++...+................++.+++......+...+|
T Consensus 182 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 234 (234)
T TIGR02521 182 RGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLFP 234 (234)
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhCc
Confidence 99999999999999986433333333333333445677788888777766554
No 31
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.63 E-value=6.3e-13 Score=133.56 Aligned_cols=107 Identities=8% Similarity=-0.090 Sum_probs=78.3
Q ss_pred HHHHHHhcCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHH
Q 019734 68 VLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGL 145 (336)
Q Consensus 68 ~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~ 145 (336)
....+......|++.+|..++.++++..|. ++.++..+|.++.. .+++++|+.++++++.. +++. ++.+|.
T Consensus 52 ~~~lA~~~~~~g~~~~A~~~~~~al~~~P~--~~~a~~~la~~l~~----~g~~~eA~~~l~~~l~~~P~~~~-~~~la~ 124 (765)
T PRK10049 52 YAAVAVAYRNLKQWQNSLTLWQKALSLEPQ--NDDYQRGLILTLAD----AGQYDEALVKAKQLVSGAPDKAN-LLALAY 124 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCCHH-HHHHHH
Confidence 344455556778888888788877777666 67777788887777 47888888888887775 4666 778888
Q ss_pred HHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHH
Q 019734 146 MYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQ 181 (336)
Q Consensus 146 ~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~ 181 (336)
++...|++++|+..|+++++. +++.+++.+|.++..
T Consensus 125 ~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~ 162 (765)
T PRK10049 125 VYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRN 162 (765)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 888888888888888887654 667777777766643
No 32
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.63 E-value=3.2e-14 Score=130.58 Aligned_cols=235 Identities=13% Similarity=0.049 Sum_probs=179.8
Q ss_pred HHHHHHhcCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHH
Q 019734 68 VLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGL 145 (336)
Q Consensus 68 ~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~ 145 (336)
-++.+..++..|++.+|+-.+....+..|. +++||..||++... ..+-..|+..+++|+++ ++.+++..||.
T Consensus 288 Pf~eG~~lm~nG~L~~A~LafEAAVkqdP~--haeAW~~LG~~qaE----NE~E~~ai~AL~rcl~LdP~NleaLmaLAV 361 (579)
T KOG1125|consen 288 PFKEGCNLMKNGDLSEAALAFEAAVKQDPQ--HAEAWQKLGITQAE----NENEQNAISALRRCLELDPTNLEALMALAV 361 (579)
T ss_pred hHHHHHHHHhcCCchHHHHHHHHHHhhChH--HHHHHHHhhhHhhh----ccchHHHHHHHHHHHhcCCccHHHHHHHHH
Confidence 367777778888888888777777777766 88888888888877 46778888888888887 57888888888
Q ss_pred HHhcCCCHHHHHHHHHHHHHcCCHHHHHHH--------------HHHHHHHHHHHHHHHHHHc----CCHHHHHHHHHHH
Q 019734 146 MYWEMDKKEAAISLYRQAAVLGDPAGQFNL--------------GISYLQEEAVKLLYQASIA----GHVRAQYQLALCL 207 (336)
Q Consensus 146 ~~~~~~~~~~A~~~~~~a~~~~~~~a~~~L--------------g~~~~~~~A~~~~~ka~~~----~~~~a~~~lg~~~ 207 (336)
.|.+.|.-.+|++++.+=+....+..+... ...++ ..-.++|..|+.. .+++.+.-||.+|
T Consensus 362 SytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l-~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy 440 (579)
T KOG1125|consen 362 SYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHL-AHIQELFLEAARQLPTKIDPDVQSGLGVLY 440 (579)
T ss_pred HHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHH-HHHHHHHHHHHHhCCCCCChhHHhhhHHHH
Confidence 888888888888888776543222211110 00011 2333445555442 4899999999999
Q ss_pred hcCCCCccCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhccC
Q 019734 208 HRGRGVDFNLQEAARWYLRAAE--GGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEG 283 (336)
Q Consensus 208 ~~g~g~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~ 283 (336)
.. .+++++|+.+|+.|+. +.+...|..||..+..|. +.++|+..|++|+++ +...+.||||..+...|
T Consensus 441 ~l----s~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~----~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG 512 (579)
T KOG1125|consen 441 NL----SGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGN----RSEEAISAYNRALQLQPGYVRVRYNLGISCMNLG 512 (579)
T ss_pred hc----chHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCc----ccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhh
Confidence 98 8999999999999975 578899999999999877 899999999999985 77889999999999999
Q ss_pred CHHHHHHHHHHHHHcC------------cHHHHHHHHHHHhhcChh
Q 019734 284 EMMKAVVYLELATRAG------------ETAADHVKNVILQQLSAT 317 (336)
Q Consensus 284 ~~~~A~~~~~~A~~~~------------~~~a~~~~~~~~~~~~~~ 317 (336)
.|++|..+|-.|+..- +......+..++..+...
T Consensus 513 ~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~ 558 (579)
T KOG1125|consen 513 AYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRS 558 (579)
T ss_pred hHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCc
Confidence 9999999999998631 124555565555555443
No 33
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.62 E-value=7e-15 Score=130.62 Aligned_cols=251 Identities=18% Similarity=0.071 Sum_probs=99.4
Q ss_pred HHHHHHHhcCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcC--CHHHHHHHH
Q 019734 67 DVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAG 144 (336)
Q Consensus 67 ~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg 144 (336)
..+..+..++..|++++|..+..+.....++..++..+..+|.+... .++++.|+..|++.+..+ ++..+..++
T Consensus 10 ~~l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~----~~~~~~A~~ay~~l~~~~~~~~~~~~~l~ 85 (280)
T PF13429_consen 10 EALRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWS----LGDYDEAIEAYEKLLASDKANPQDYERLI 85 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccc----ccccccccccccccccccccccccccccc
Confidence 34556777889999999987776655554333477888889988887 589999999999998764 567777888
Q ss_pred HHHhcCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHH----HHHHHHHHHHHHc----CCHHHHHHHHHHHhcCCCCcc
Q 019734 145 LMYWEMDKKEAAISLYRQAAVL-GDPAGQFNLGISYLQ----EEAVKLLYQASIA----GHVRAQYQLALCLHRGRGVDF 215 (336)
Q Consensus 145 ~~~~~~~~~~~A~~~~~~a~~~-~~~~a~~~Lg~~~~~----~~A~~~~~ka~~~----~~~~a~~~lg~~~~~g~g~~~ 215 (336)
.+ ...+++++|+..+.++.+. +++..+..+..++.. +++...++++... .++..+..+|.++.. .|
T Consensus 86 ~l-~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~----~G 160 (280)
T PF13429_consen 86 QL-LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQ----LG 160 (280)
T ss_dssp ---------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHH----CC
T ss_pred cc-cccccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHH----cC
Confidence 88 6889999999999988765 566666666666665 8888888886543 467889999999998 89
Q ss_pred CHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhccCCHHHHHHH
Q 019734 216 NLQEAARWYLRAAE--GGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVY 291 (336)
Q Consensus 216 ~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~A~~~ 291 (336)
+.++|+..|+++++ ++++.+...++.++.. .| +.+++...++..... .++..+..+|.+|...|++++|..+
T Consensus 161 ~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~-~~---~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~ 236 (280)
T PF13429_consen 161 DPDKALRDYRKALELDPDDPDARNALAWLLID-MG---DYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEY 236 (280)
T ss_dssp HHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCT-TC---HHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-CC---ChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccc
Confidence 99999999999965 5788999999998854 33 777766666666543 5667788999999999999999999
Q ss_pred HHHHHHcCcHHHHHHHHHHHhhcChhcHHHHHHHHHHhh
Q 019734 292 LELATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWR 330 (336)
Q Consensus 292 ~~~A~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~ 330 (336)
|++++...+.+..............++.++|..+..+..
T Consensus 237 ~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 237 LEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHSTT-HHHHHHHHHHHT----------------
T ss_pred ccccccccccccccccccccccccccccccccccccccc
Confidence 999999776666666666666667777888887766554
No 34
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.62 E-value=1.1e-12 Score=131.80 Aligned_cols=253 Identities=13% Similarity=0.017 Sum_probs=138.0
Q ss_pred HHHHHHhcCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHH
Q 019734 68 VLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGL 145 (336)
Q Consensus 68 ~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~ 145 (336)
.+..+..+...|++.+|...+.++++..|+ ++. ++.+|.++.. .+++++|+..|+++++. +++.++..++.
T Consensus 86 ~~~la~~l~~~g~~~eA~~~l~~~l~~~P~--~~~-~~~la~~l~~----~g~~~~Al~~l~~al~~~P~~~~~~~~la~ 158 (765)
T PRK10049 86 QRGLILTLADAGQYDEALVKAKQLVSGAPD--KAN-LLALAYVYKR----AGRHWDELRAMTQALPRAPQTQQYPTEYVQ 158 (765)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--CHH-HHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 344444555677777777777777777665 555 7777777776 46777777777777765 46666666666
Q ss_pred HHhcCCCHHHHHHHHH----------------------------------------------HHHHc--CCHHH------
Q 019734 146 MYWEMDKKEAAISLYR----------------------------------------------QAAVL--GDPAG------ 171 (336)
Q Consensus 146 ~~~~~~~~~~A~~~~~----------------------------------------------~a~~~--~~~~a------ 171 (336)
++...+..++|+..++ ++++. .+|..
T Consensus 159 ~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~ 238 (765)
T PRK10049 159 ALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQR 238 (765)
T ss_pred HHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHH
Confidence 6665555554443333 11110 11111
Q ss_pred -HHH-HHHHHHH---HHHHHHHHHHHHcC---CHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHCC--C---------
Q 019734 172 -QFN-LGISYLQ---EEAVKLLYQASIAG---HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGG--Y--------- 232 (336)
Q Consensus 172 -~~~-Lg~~~~~---~~A~~~~~ka~~~~---~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~~--~--------- 232 (336)
... +|.++.. ++|+..|+++++.+ ...+...+|.+|.. .+++++|+.+|++++... +
T Consensus 239 a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~----~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~ 314 (765)
T PRK10049 239 ARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLK----LHQPEKAQSILTELFYHPETIADLSDEELA 314 (765)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHh----cCCcHHHHHHHHHHhhcCCCCCCCChHHHH
Confidence 010 2222222 55555555555443 12233334554444 445555555555443321 0
Q ss_pred --------------------------------------------HHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--
Q 019734 233 --------------------------------------------VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC-- 266 (336)
Q Consensus 233 --------------------------------------------~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~-- 266 (336)
..++..++.++.. .++.++|+..+++++..
T Consensus 315 ~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~----~g~~~eA~~~l~~al~~~P 390 (765)
T PRK10049 315 DLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKY----SNDLPQAEMRARELAYNAP 390 (765)
T ss_pred HHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCC
Confidence 1233444444432 12566666666665542
Q ss_pred CCHHHHHHHHHHhhccCCHHHHHHHHHHHHHcCcHHHHHHHHHHHhhcChhcHHHHHHHHHHhhcCCCC
Q 019734 267 GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWRAMPSL 335 (336)
Q Consensus 267 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 335 (336)
+++..++.+|.++...|++++|...+++++...+.+....+......+..++.++|+..++++++..|.
T Consensus 391 ~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd 459 (765)
T PRK10049 391 GNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQ 459 (765)
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Confidence 455566666666666666666666666666665544444455555555556666666666666666554
No 35
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=2.6e-13 Score=124.30 Aligned_cols=226 Identities=16% Similarity=0.144 Sum_probs=180.5
Q ss_pred hcCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHhcCC
Q 019734 74 ASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMD 151 (336)
Q Consensus 74 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~ 151 (336)
.++..|+..+-..+.-++.+.-|. .+..|+.+|..|.- .+...+|.+||.||...+ ...+|..+|..+...+
T Consensus 287 ~l~el~~~n~Lf~lsh~LV~~yP~--~a~sW~aVg~YYl~----i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~ 360 (611)
T KOG1173|consen 287 CLYELGKSNKLFLLSHKLVDLYPS--KALSWFAVGCYYLM----IGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEG 360 (611)
T ss_pred HHHHhcccchHHHHHHHHHHhCCC--CCcchhhHHHHHHH----hcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcc
Confidence 334444444444444455555454 56678888888777 588999999999998874 6789999999999999
Q ss_pred CHHHHHHHHHHHHHc--CCHHHHHHHHHHHHH----HHHHHHHHHHHH--cCCHHHHHHHHHHHhcCCCCccCHHHHHHH
Q 019734 152 KKEAAISLYRQAAVL--GDPAGQFNLGISYLQ----EEAVKLLYQASI--AGHVRAQYQLALCLHRGRGVDFNLQEAARW 223 (336)
Q Consensus 152 ~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~----~~A~~~~~ka~~--~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~ 223 (336)
+.++|+..|..|... |.-.-.+.||.-|.. +.|..+|.+|.. +.+|-....+|.+... .+.+.+|..|
T Consensus 361 EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~----~~~y~~A~~~ 436 (611)
T KOG1173|consen 361 EHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYT----YEEYPEALKY 436 (611)
T ss_pred hHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeeh----HhhhHHHHHH
Confidence 999999999999887 777888889999986 999999999866 4789999999999887 6889999999
Q ss_pred HHHHHHC----C-----CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhccCCHHHHHHHH
Q 019734 224 YLRAAEG----G-----YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYL 292 (336)
Q Consensus 224 ~~~a~~~----~-----~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~ 292 (336)
|++++.. . -...+.+||.+|.+.. .+.+|+.+|++++.. .++..+..+|.+|..+|+++.|+.+|
T Consensus 437 f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~----~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~f 512 (611)
T KOG1173|consen 437 FQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLN----KYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHF 512 (611)
T ss_pred HHHHHHHhhhccccccchhHHHHhHHHHHHHHh----hHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHH
Confidence 9998732 1 2344789999997643 899999999999875 67888899999999999999999999
Q ss_pred HHHHHcC--cHHHHHHHHHHHhh
Q 019734 293 ELATRAG--ETAADHVKNVILQQ 313 (336)
Q Consensus 293 ~~A~~~~--~~~a~~~~~~~~~~ 313 (336)
.+|+-.. +.-+...++.....
T Consensus 513 hKaL~l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 513 HKALALKPDNIFISELLKLAIED 535 (611)
T ss_pred HHHHhcCCccHHHHHHHHHHHHh
Confidence 9998764 44566666655544
No 36
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=99.59 E-value=6.1e-14 Score=111.03 Aligned_cols=147 Identities=16% Similarity=0.042 Sum_probs=116.4
Q ss_pred ChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCC---CCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCHH
Q 019734 78 LPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGR---GVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKE 154 (336)
Q Consensus 78 ~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~---g~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~~~~~~ 154 (336)
.|..........+.++.+.+.+.+.++..+|++...|. ....|.++|.+|+.+|+.+++..+++.|..+|..+.+.
T Consensus 82 KgG~~~~l~~a~r~~~~aC~~n~~~aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~~~~aCf~LS~m~~~g~~k- 160 (248)
T KOG4014|consen 82 KGGDDASLSKAIRPMKIACDANIPQACRYLGLLHWNGEKDRKADPDSEKAERYMTRACDLEDGEACFLLSTMYMGGKEK- 160 (248)
T ss_pred cCCCccCHHHHHHHHHHHhccCCHHHHhhhhhhhccCcCCccCCCCcHHHHHHHHHhccCCCchHHHHHHHHHhccchh-
Confidence 33334444444678888888889999999999999986 23456899999999999999999999999999765322
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH-HHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHH
Q 019734 155 AAISLYRQAAVLGDPAGQFNLGISYLQ-EEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAE 229 (336)
Q Consensus 155 ~A~~~~~~a~~~~~~~a~~~Lg~~~~~-~~A~~~~~ka~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~ 229 (336)
+.+. +.-.+.|----.+|.+... ++|+++--+|.+++++.|..|+..+|..|.||++|.++|..+-.+|.+
T Consensus 161 -~~t~---ap~~g~p~~~~~~~~~~kDMdka~qfa~kACel~~~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e 232 (248)
T KOG4014|consen 161 -FKTN---APGEGKPLDRAELGSLSKDMDKALQFAIKACELDIPQACANVSRMYKLGDGVPKDEDQAEKYKDRAKE 232 (248)
T ss_pred -hccc---CCCCCCCcchhhhhhhhHhHHHHHHHHHHHHhcCChHHHhhHHHHHHccCCCCccHHHHHHHHHHHHH
Confidence 1111 1111444444556777766 999999999999999999999999999999999999999999998865
No 37
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.59 E-value=1.2e-12 Score=126.48 Aligned_cols=246 Identities=11% Similarity=0.015 Sum_probs=201.9
Q ss_pred CChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHhcCC
Q 019734 77 TLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG-----STLAMVDAGLMYWEMD 151 (336)
Q Consensus 77 ~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~~-----~~~a~~~lg~~~~~~~ 151 (336)
....+..+..+....+...+. +|+++..|+..|+. ++|+..+....+-++... -++++|++|+.|...|
T Consensus 248 d~~s~~~~~~ll~~ay~~n~~--nP~~l~~LAn~fyf----K~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~G 321 (1018)
T KOG2002|consen 248 DSDSYKKGVQLLQRAYKENNE--NPVALNHLANHFYF----KKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQG 321 (1018)
T ss_pred chHHHHHHHHHHHHHHhhcCC--CcHHHHHHHHHHhh----cccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhc
Confidence 445666777777777777655 89999999999998 799999999999998763 3578999999999999
Q ss_pred CHHHHHHHHHHHHHc--CC-HHHHHHHHHHHHH----HHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHH
Q 019734 152 KKEAAISLYRQAAVL--GD-PAGQFNLGISYLQ----EEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAAR 222 (336)
Q Consensus 152 ~~~~A~~~~~~a~~~--~~-~~a~~~Lg~~~~~----~~A~~~~~ka~~~--~~~~a~~~lg~~~~~g~g~~~~~~~A~~ 222 (336)
|+++|..+|.+++.. ++ .-+++.||.+|.. +.++.+|++..+. ++.+.+..||.+|..-.-.....++|..
T Consensus 322 d~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~ 401 (1018)
T KOG2002|consen 322 DFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASN 401 (1018)
T ss_pred cHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHH
Confidence 999999999999866 33 6788999999988 9999999999875 7899999999999862122335689999
Q ss_pred HHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH-------cCCHHHHHHHHHHhhccCCHHHHHHHHH
Q 019734 223 WYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAAD-------CGHGKAQLEHGLGLFTEGEMMKAVVYLE 293 (336)
Q Consensus 223 ~~~~a~~~--~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~-------~~~~~a~~~lg~~~~~~~~~~~A~~~~~ 293 (336)
+..++... .+.+++..++.+|.. +|...++.+|.+|+. .-+++..+|+|..++..|++.+|...|+
T Consensus 402 ~l~K~~~~~~~d~~a~l~laql~e~-----~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~ 476 (1018)
T KOG2002|consen 402 VLGKVLEQTPVDSEAWLELAQLLEQ-----TDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFK 476 (1018)
T ss_pred HHHHHHhcccccHHHHHHHHHHHHh-----cChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHH
Confidence 99999765 689999999999974 377778999999985 2357888999999999999999999999
Q ss_pred HHHHc----CcH-H-------HHHHHHHHHhhcChhcHHHHHHHHHHhhcCCCC
Q 019734 294 LATRA----GET-A-------ADHVKNVILQQLSATSRDRAMLVVDSWRAMPSL 335 (336)
Q Consensus 294 ~A~~~----~~~-~-------a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 335 (336)
.|... .+. + -.++++.+...+. +...|.+..+.+++.||+
T Consensus 477 ~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~--~~~~A~e~Yk~Ilkehp~ 528 (1018)
T KOG2002|consen 477 SALGKLLEVANKDEGKSTNLTLKYNLARLLEELH--DTEVAEEMYKSILKEHPG 528 (1018)
T ss_pred HHhhhhhhhcCccccccchhHHHHHHHHHHHhhh--hhhHHHHHHHHHHHHCch
Confidence 99764 222 2 2777888777754 456688899999988885
No 38
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.56 E-value=1.3e-12 Score=107.69 Aligned_cols=166 Identities=19% Similarity=0.184 Sum_probs=109.4
Q ss_pred CHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHH
Q 019734 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNL 175 (336)
Q Consensus 100 ~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~L 175 (336)
-+.+...||+-|+. .+|+..|..-+++|++. .+..++..++.+|...|+.+.|.+.|++|+.. ++.+.++|.
T Consensus 34 aa~arlqLal~YL~----~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNY 109 (250)
T COG3063 34 AAKARLQLALGYLQ----QGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNY 109 (250)
T ss_pred HHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhh
Confidence 36777888888888 48888888888888887 46788888888888888888888888888754 667777777
Q ss_pred HHHHHH----HHHHHHHHHHHHc----CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHc
Q 019734 176 GISYLQ----EEAVKLLYQASIA----GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSF 245 (336)
Q Consensus 176 g~~~~~----~~A~~~~~ka~~~----~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~ 245 (336)
|..+.. ++|..+|++|++. ..++++-|+|.|-.. .++++.|..+|+++++. ..+.+...++..+..
T Consensus 110 G~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~----~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~ 185 (250)
T COG3063 110 GAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALK----AGQFDQAEEYLKRALELDPQFPPALLELARLHYK 185 (250)
T ss_pred hHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhh----cCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHh
Confidence 776665 6666666666553 234556666666555 55666666666666433 445555555555533
Q ss_pred CCCCcccHHHHHHHHHHHHHcCCHH-HHHHHHH
Q 019734 246 GEGLPLSHRQARKWMKRAADCGHGK-AQLEHGL 277 (336)
Q Consensus 246 ~~g~~~~~~~A~~~~~~a~~~~~~~-a~~~lg~ 277 (336)
.+++-.|..++++-...+... ...+||+
T Consensus 186 ----~~~y~~Ar~~~~~~~~~~~~~A~sL~L~i 214 (250)
T COG3063 186 ----AGDYAPARLYLERYQQRGGAQAESLLLGI 214 (250)
T ss_pred ----cccchHHHHHHHHHHhcccccHHHHHHHH
Confidence 225666666666555443222 2245554
No 39
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.55 E-value=2.2e-13 Score=117.25 Aligned_cols=210 Identities=17% Similarity=0.164 Sum_probs=177.0
Q ss_pred CCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCH
Q 019734 76 FTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKK 153 (336)
Q Consensus 76 ~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~ 153 (336)
+..|-+++|...++..++. .++++.+..|..+|.. ..++..|+..|...++. ++..-....++++...++.
T Consensus 234 lrLgm~r~AekqlqssL~q---~~~~dTfllLskvY~r----idQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~ 306 (478)
T KOG1129|consen 234 LRLGMPRRAEKQLQSSLTQ---FPHPDTFLLLSKVYQR----IDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQ 306 (478)
T ss_pred HHhcChhhhHHHHHHHhhc---CCchhHHHHHHHHHHH----hccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhH
Confidence 3445566776555544444 6789999999999998 68999999999999887 5667777889999999999
Q ss_pred HHHHHHHHHHHHc--CCHHHHHHHHHHHHH----HHHHHHHHHHHHcC--CHHHHHHHHHHHhcCCCCccCHHHHHHHHH
Q 019734 154 EAAISLYRQAAVL--GDPAGQFNLGISYLQ----EEAVKLLYQASIAG--HVRAQYQLALCLHRGRGVDFNLQEAARWYL 225 (336)
Q Consensus 154 ~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~----~~A~~~~~ka~~~~--~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~ 225 (336)
++|+++|+.+++. .+.++.--+|.-|+. +-|+.+|++.+.+| .++-+.|+|.|+.. .++++.+...|+
T Consensus 307 ~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~y----aqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 307 EDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLY----AQQIDLVLPSFQ 382 (478)
T ss_pred HHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHh----hcchhhhHHHHH
Confidence 9999999999977 567777666666655 99999999999987 88999999999998 689999999999
Q ss_pred HHHHC-----CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhccCCHHHHHHHHHHHHHc
Q 019734 226 RAAEG-----GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRA 298 (336)
Q Consensus 226 ~a~~~-----~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~ 298 (336)
+|+.. .-.+.|||||.+. .+.| |+..|..+|+.++.. ++.+++.|||.+-...|++++|..++..|...
T Consensus 383 RAlstat~~~~aaDvWYNlg~va-V~iG---D~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 383 RALSTATQPGQAADVWYNLGFVA-VTIG---DFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHhhccCcchhhhhhhccceeE-Eecc---chHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 99653 2378899999988 5555 999999999999874 67899999999999999999999999998775
Q ss_pred Cc
Q 019734 299 GE 300 (336)
Q Consensus 299 ~~ 300 (336)
.+
T Consensus 459 ~P 460 (478)
T KOG1129|consen 459 MP 460 (478)
T ss_pred Cc
Confidence 44
No 40
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.55 E-value=7.4e-12 Score=121.12 Aligned_cols=232 Identities=13% Similarity=0.036 Sum_probs=183.4
Q ss_pred ChHHHHHHHHhcCCChhHHhhhHHHHHHHHHhCC-CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcC---CHHH
Q 019734 64 LPFDVLNKIAASFTLPQLRAASLVCKSWNDALRP-LREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG---STLA 139 (336)
Q Consensus 64 ~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~~---~~~a 139 (336)
.|......+...|-.|+|..+..++...+..... .-.++.+|.+|.+|.. .||+++|..||-++...+ +.-+
T Consensus 269 nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha----~Gd~ekA~~yY~~s~k~~~d~~~l~ 344 (1018)
T KOG2002|consen 269 NPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHA----QGDFEKAFKYYMESLKADNDNFVLP 344 (1018)
T ss_pred CcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHh----hccHHHHHHHHHHHHccCCCCcccc
Confidence 3433444455557899999999888887776532 2357789999999999 699999999999998763 3678
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHH--------HHHHHHHHHHHHc--CCHHHHHHHHHHH
Q 019734 140 MVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQ--------EEAVKLLYQASIA--GHVRAQYQLALCL 207 (336)
Q Consensus 140 ~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~--------~~A~~~~~ka~~~--~~~~a~~~lg~~~ 207 (336)
++.||.+|...|+++.|+.+|.+.+.. ++.+.+..||.+|.. ++|..+..++++. .+.+++..++.+|
T Consensus 345 ~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~ 424 (1018)
T KOG2002|consen 345 LVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLL 424 (1018)
T ss_pred ccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 899999999999999999999999865 889999999999987 8899999999876 5889999999999
Q ss_pred hcCCCCccCHHHHHHHHHHHHH-------CCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc----CCH-------
Q 019734 208 HRGRGVDFNLQEAARWYLRAAE-------GGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC----GHG------- 269 (336)
Q Consensus 208 ~~g~g~~~~~~~A~~~~~~a~~-------~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~----~~~------- 269 (336)
+. +|...++.+|.+|.+ .-.++..+++|..++.. +++.+|...|..|... .+.
T Consensus 425 e~-----~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~----g~~~~A~~~f~~A~~~~~~~~n~de~~~~~ 495 (1018)
T KOG2002|consen 425 EQ-----TDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRL----GNIEKALEHFKSALGKLLEVANKDEGKSTN 495 (1018)
T ss_pred Hh-----cChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHh----cChHHHHHHHHHHhhhhhhhcCccccccch
Confidence 86 678888888888863 23577788888888653 3888888888888754 121
Q ss_pred -HHHHHHHHHhhccCCHHHHHHHHHHHHHc--CcHHHHHHHH
Q 019734 270 -KAQLEHGLGLFTEGEMMKAVVYLELATRA--GETAADHVKN 308 (336)
Q Consensus 270 -~a~~~lg~~~~~~~~~~~A~~~~~~A~~~--~~~~a~~~~~ 308 (336)
...|||+.++...++++.|-..|+..+.. |..++...++
T Consensus 496 lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~ 537 (1018)
T KOG2002|consen 496 LTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLG 537 (1018)
T ss_pred hHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhh
Confidence 23688888888888888888888888875 3445544444
No 41
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.54 E-value=1.7e-12 Score=106.93 Aligned_cols=192 Identities=14% Similarity=0.055 Sum_probs=158.9
Q ss_pred CCCCCChHHHHHHHHhcCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CC
Q 019734 59 HDFASLPFDVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GS 136 (336)
Q Consensus 59 ~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~ 136 (336)
.+-.......++.+...+..|++..|..-..+.++..|. ...+|..++.+|.. .++.+.|.+.|++|+.+ ++
T Consensus 29 ~~~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs--~~~a~~~~A~~Yq~----~Ge~~~A~e~YrkAlsl~p~~ 102 (250)
T COG3063 29 TDRNEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPS--YYLAHLVRAHYYQK----LGENDLADESYRKALSLAPNN 102 (250)
T ss_pred ccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc--cHHHHHHHHHHHHH----cCChhhHHHHHHHHHhcCCCc
Confidence 343344455688899999999999999999999999887 89999999999999 68999999999999998 68
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHH----HHHHHHHHHHHHc--CCHHHHHHHHHH
Q 019734 137 TLAMVDAGLMYWEMDKKEAAISLYRQAAVL----GDPAGQFNLGISYLQ----EEAVKLLYQASIA--GHVRAQYQLALC 206 (336)
Q Consensus 137 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~~~~----~~A~~~~~ka~~~--~~~~a~~~lg~~ 206 (336)
.+.+++.|..+...|++++|..+|.+|++. ..+..+.|+|.|.+. +.|..+|+++++. +.+.+...++..
T Consensus 103 GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~ 182 (250)
T COG3063 103 GDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARL 182 (250)
T ss_pred cchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHH
Confidence 999999999999999999999999999976 457899999999997 9999999999876 588899999999
Q ss_pred HhcCCCCccCHHHHHHHHHHHHHCCCH-HHHHHHHHHHHcCCCCcccHHHHHHHHHHH
Q 019734 207 LHRGRGVDFNLQEAARWYLRAAEGGYV-RAMYNTSLCYSFGEGLPLSHRQARKWMKRA 263 (336)
Q Consensus 207 ~~~g~g~~~~~~~A~~~~~~a~~~~~~-~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a 263 (336)
... .+|+..|..++++-...+.. ..-..||.-..+..| |-..+..|=.+.
T Consensus 183 ~~~----~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~g---d~~~a~~Y~~qL 233 (250)
T COG3063 183 HYK----AGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLG---DRAAAQRYQAQL 233 (250)
T ss_pred HHh----cccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhc---cHHHHHHHHHHH
Confidence 888 89999999999998665433 334455555555444 555555544333
No 42
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=3.1e-12 Score=117.33 Aligned_cols=258 Identities=13% Similarity=0.051 Sum_probs=206.5
Q ss_pred CChHHHHHHHHhcCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHH
Q 019734 63 SLPFDVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAM 140 (336)
Q Consensus 63 ~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~ 140 (336)
..+.-+..++..++...++.+-..+....++..|-... -.-..+|-++..| +..+=+..=.+.++. ..+..|
T Consensus 242 ~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~-~~~~~ia~l~el~-----~~n~Lf~lsh~LV~~yP~~a~sW 315 (611)
T KOG1173|consen 242 ENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLP-CLPLHIACLYELG-----KSNKLFLLSHKLVDLYPSKALSW 315 (611)
T ss_pred hcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcc-hHHHHHHHHHHhc-----ccchHHHHHHHHHHhCCCCCcch
Confidence 44556678888999999999999999999999886433 3334577666664 333323233333443 468899
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHH----HHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCC
Q 019734 141 VDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQ----EEAVKLLYQASIA--GHVRAQYQLALCLHRGRG 212 (336)
Q Consensus 141 ~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~----~~A~~~~~ka~~~--~~~~a~~~lg~~~~~g~g 212 (336)
+.+|..|...+...+|+.+|-|+... ....||..+|..|.. ++|+.+|.+|.+. |-..-.+.+|.-|..
T Consensus 316 ~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~--- 392 (611)
T KOG1173|consen 316 FAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMR--- 392 (611)
T ss_pred hhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHH---
Confidence 99999999999999999999998654 678999999999987 9999999999885 777788889988877
Q ss_pred CccCHHHHHHHHHHHH--HCCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc----CC-----HHHHHHHHHHhhc
Q 019734 213 VDFNLQEAARWYLRAA--EGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC----GH-----GKAQLEHGLGLFT 281 (336)
Q Consensus 213 ~~~~~~~A~~~~~~a~--~~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~----~~-----~~a~~~lg~~~~~ 281 (336)
.++.+.|..+|..|. .+.|+-....+|.+... .+.+.+|..||+.++.. ++ .....|||.+|.+
T Consensus 393 -t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~----~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rk 467 (611)
T KOG1173|consen 393 -TNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYT----YEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRK 467 (611)
T ss_pred -hccHHHHHHHHHHHHhcCCCcchhhhhhhheeeh----HhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHH
Confidence 799999999999985 46899999999999865 33899999999999842 22 1236899999999
Q ss_pred cCCHHHHHHHHHHHHHcCcHHHHHHHHHHHhhcChhcHHHHHHHHHHhhcCCC
Q 019734 282 EGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWRAMPS 334 (336)
Q Consensus 282 ~~~~~~A~~~~~~A~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 334 (336)
.+.+++|+.+|++|+...+.++...-+..+.+.-.+..+.|.+...+-+-+.|
T Consensus 468 l~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p 520 (611)
T KOG1173|consen 468 LNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKP 520 (611)
T ss_pred HhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCC
Confidence 99999999999999998877777666666667777888999988777665555
No 43
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.51 E-value=8.7e-12 Score=111.72 Aligned_cols=199 Identities=21% Similarity=0.116 Sum_probs=115.5
Q ss_pred HHHHhcCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHH--HHcCCHHHHHHHHHHH
Q 019734 70 NKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKG--AARGSTLAMVDAGLMY 147 (336)
Q Consensus 70 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A--~~~~~~~a~~~lg~~~ 147 (336)
.+....|.+|++++|...|+..++..+. ...++|++|+.+.. .+++++|+.+|-+. +-+++.+.+++++.+|
T Consensus 495 nkgn~~f~ngd~dka~~~ykeal~ndas--c~ealfniglt~e~----~~~ldeald~f~klh~il~nn~evl~qianiy 568 (840)
T KOG2003|consen 495 NKGNIAFANGDLDKAAEFYKEALNNDAS--CTEALFNIGLTAEA----LGNLDEALDCFLKLHAILLNNAEVLVQIANIY 568 (840)
T ss_pred cCCceeeecCcHHHHHHHHHHHHcCchH--HHHHHHHhcccHHH----hcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3333445555566555555555444322 45555666655555 35566666655542 3335555666666666
Q ss_pred hcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHH----HHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHH
Q 019734 148 WEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQ----EEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQE 219 (336)
Q Consensus 148 ~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~----~~A~~~~~ka~~~--~~~~a~~~lg~~~~~g~g~~~~~~~ 219 (336)
....++.+|++||.++... ++|..+..||.+|-+ .+|++|+-..-.- -+.+..-.||..|.. ..=.++
T Consensus 569 e~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyid----tqf~ek 644 (840)
T KOG2003|consen 569 ELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYID----TQFSEK 644 (840)
T ss_pred HHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHh----hHHHHH
Confidence 5555666666666555433 555555666666555 4555555444332 234445555555554 455678
Q ss_pred HHHHHHHHH--HCCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhcc
Q 019734 220 AARWYLRAA--EGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTE 282 (336)
Q Consensus 220 A~~~~~~a~--~~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~ 282 (336)
|+.||++|+ ++....-+..++.|+.+ .| ++.+|+..|+..-.. .+.+..-.|-.+.-..
T Consensus 645 ai~y~ekaaliqp~~~kwqlmiasc~rr-sg---nyqka~d~yk~~hrkfpedldclkflvri~~dl 707 (840)
T KOG2003|consen 645 AINYFEKAALIQPNQSKWQLMIASCFRR-SG---NYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDL 707 (840)
T ss_pred HHHHHHHHHhcCccHHHHHHHHHHHHHh-cc---cHHHHHHHHHHHHHhCccchHHHHHHHHHhccc
Confidence 999999984 44566677788888865 33 999999999987664 4445444444433333
No 44
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.51 E-value=7.6e-12 Score=111.88 Aligned_cols=206 Identities=14% Similarity=-0.002 Sum_probs=150.6
Q ss_pred CCHHHHHHHHHHHHHc------CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHH----HHHHH
Q 019734 119 KNLDKALDSFLKGAAR------GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQ----EEAVK 186 (336)
Q Consensus 119 ~~~~~A~~~~~~A~~~------~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~----~~A~~ 186 (336)
...+.++..+.+++.. +.+..++.+|.+|...|+.++|+..|+++++. +++.+++++|.++.. ++|+.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 3567788888888853 24678999999999999999999999999865 789999999999998 99999
Q ss_pred HHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHH
Q 019734 187 LLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAA 264 (336)
Q Consensus 187 ~~~ka~~~--~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~ 264 (336)
.|+++++. ++..+++++|.++.. .+++++|+..|++++.......+..+...+... ..+.++|+..+.+++
T Consensus 120 ~~~~Al~l~P~~~~a~~~lg~~l~~----~g~~~eA~~~~~~al~~~P~~~~~~~~~~l~~~---~~~~~~A~~~l~~~~ 192 (296)
T PRK11189 120 AFDSVLELDPTYNYAYLNRGIALYY----GGRYELAQDDLLAFYQDDPNDPYRALWLYLAES---KLDPKQAKENLKQRY 192 (296)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHc---cCCHHHHHHHHHHHH
Confidence 99999875 688999999999988 799999999999998764333222222222122 238999999998887
Q ss_pred HcCCHHHHHHHHHHhhccCCHHH--HHHHHHHHH----HcC--cHHHHHHHHHHHhhcChhcHHHHHHHHHHhhcCCC
Q 019734 265 DCGHGKAQLEHGLGLFTEGEMMK--AVVYLELAT----RAG--ETAADHVKNVILQQLSATSRDRAMLVVDSWRAMPS 334 (336)
Q Consensus 265 ~~~~~~a~~~lg~~~~~~~~~~~--A~~~~~~A~----~~~--~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 334 (336)
...++..+. .+.++...|+..+ ++..+.+++ +.+ ..++..+++.++. ..++.++|+..+++....+|
T Consensus 193 ~~~~~~~~~-~~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~--~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 193 EKLDKEQWG-WNIVEFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYL--SLGDLDEAAALFKLALANNV 267 (296)
T ss_pred hhCCccccH-HHHHHHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHHhCC
Confidence 654443332 3454555565533 333333332 222 2345566666555 56678999999999888776
No 45
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.48 E-value=1.9e-11 Score=110.50 Aligned_cols=226 Identities=15% Similarity=0.106 Sum_probs=182.8
Q ss_pred HHHHHhcCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHH
Q 019734 69 LNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLM 146 (336)
Q Consensus 69 l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~ 146 (336)
+..+.-+|-.|+.-.|...+....+-.+. +..-+..+|.+|.+ ..+.++-...|.+|..+ .+++.+++.|.+
T Consensus 330 ~~~gtF~fL~g~~~~a~~d~~~~I~l~~~--~~~lyI~~a~~y~d----~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm 403 (606)
T KOG0547|consen 330 LLRGTFHFLKGDSLGAQEDFDAAIKLDPA--FNSLYIKRAAAYAD----ENQSEKMWKDFNKAEDLDPENPDVYYHRGQM 403 (606)
T ss_pred HHhhhhhhhcCCchhhhhhHHHHHhcCcc--cchHHHHHHHHHhh----hhccHHHHHHHHHHHhcCCCCCchhHhHHHH
Confidence 33444457778888888777777777655 33338889999999 68999999999999998 489999999999
Q ss_pred HhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHH----HHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHH
Q 019734 147 YWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQ----EEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQ 218 (336)
Q Consensus 147 ~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~----~~A~~~~~ka~~~--~~~~a~~~lg~~~~~g~g~~~~~~ 218 (336)
++-.+++++|+.-|++++.. .++-++..++.+.+. +++...|+.+... .-++.+...|.++.. .++++
T Consensus 404 ~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtD----qqqFd 479 (606)
T KOG0547|consen 404 RFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTD----QQQFD 479 (606)
T ss_pred HHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhh----HHhHH
Confidence 99999999999999999877 556666777766666 8899999999885 688999999999998 89999
Q ss_pred HHHHHHHHHHHCCC--------HHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCC--HHHHHHHHHHhhccCCHHHH
Q 019734 219 EAARWYLRAAEGGY--------VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGH--GKAQLEHGLGLFTEGEMMKA 288 (336)
Q Consensus 219 ~A~~~~~~a~~~~~--------~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~~~--~~a~~~lg~~~~~~~~~~~A 288 (336)
+|++.|.+|++... +..+.+-|.+..+ -.+|+.+|...+++|++.++ ..++..||.+...+|+.++|
T Consensus 480 ~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~q---wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eA 556 (606)
T KOG0547|consen 480 KAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQ---WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEA 556 (606)
T ss_pred HHHHHHHHHHhhccccccccccchhhhhhhHhhhc---hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHH
Confidence 99999999987643 3334444444444 24599999999999999755 56778999999999999999
Q ss_pred HHHHHHHHHcCcHHHHHHH
Q 019734 289 VVYLELATRAGETAADHVK 307 (336)
Q Consensus 289 ~~~~~~A~~~~~~~a~~~~ 307 (336)
+.+|++++..-....+..-
T Consensus 557 ielFEksa~lArt~~E~~~ 575 (606)
T KOG0547|consen 557 IELFEKSAQLARTESEMVH 575 (606)
T ss_pred HHHHHHHHHHHHhHHHHHH
Confidence 9999999987555444433
No 46
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.46 E-value=2.5e-11 Score=113.87 Aligned_cols=216 Identities=18% Similarity=0.134 Sum_probs=166.0
Q ss_pred HHHHhcCCChhHHhhhHHHHHHHHHhCC-----CC-CHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc-----C--C
Q 019734 70 NKIAASFTLPQLRAASLVCKSWNDALRP-----LR-EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR-----G--S 136 (336)
Q Consensus 70 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~-~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~-----~--~ 136 (336)
..+......|+++.|+.+++..++...+ .. -+..+..+|.+|.. .+.+.+|+..|++|+.. | |
T Consensus 204 ~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~----~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 204 NLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRS----LGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHH----hccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 3444556889999999999999988432 11 23344458999988 68999999999999863 2 3
Q ss_pred ---HHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-------CC---HHHHHHHHHHHHH----HHHHHHHHHHHHc-----
Q 019734 137 ---TLAMVDAGLMYWEMDKKEAAISLYRQAAVL-------GD---PAGQFNLGISYLQ----EEAVKLLYQASIA----- 194 (336)
Q Consensus 137 ---~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~-------~~---~~a~~~Lg~~~~~----~~A~~~~~ka~~~----- 194 (336)
+..+.+|+.+|...|++++|..++.+|++. .+ +..+.+++.++.. ++|+.+|+++++.
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 357889999999999999999999999743 22 3455667777666 9999999988652
Q ss_pred --CC---HHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHC----------CCHHHHHHHHHHHHcCCCCcccHHHHHHH
Q 019734 195 --GH---VRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG----------GYVRAMYNTSLCYSFGEGLPLSHRQARKW 259 (336)
Q Consensus 195 --~~---~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~----------~~~~a~~~lg~~~~~~~g~~~~~~~A~~~ 259 (336)
.+ +....+||.+|.. .+++++|.++|++|+.. +......+||..|.... ++.+|.+.
T Consensus 360 g~~~~~~a~~~~nl~~l~~~----~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k----~~~~a~~l 431 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLK----MGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELK----KYEEAEQL 431 (508)
T ss_pred cccchHHHHHHHHHHHHHHH----hcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhc----ccchHHHH
Confidence 22 4567899999998 89999999999999753 24677889999997654 45545555
Q ss_pred HHHH------HHcCC---HHHHHHHHHHhhccCCHHHHHHHHHHHHH
Q 019734 260 MKRA------ADCGH---GKAQLEHGLGLFTEGEMMKAVVYLELATR 297 (336)
Q Consensus 260 ~~~a------~~~~~---~~a~~~lg~~~~~~~~~~~A~~~~~~A~~ 297 (336)
|.++ +..++ ...+.||+.+|..+|++++|.++.+++++
T Consensus 432 ~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 432 FEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 5544 44444 45678999999999999999999999885
No 47
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.45 E-value=1.3e-12 Score=116.05 Aligned_cols=209 Identities=16% Similarity=0.064 Sum_probs=103.8
Q ss_pred hcCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHhcCCC
Q 019734 74 ASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR-GSTLAMVDAGLMYWEMDK 152 (336)
Q Consensus 74 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~-~~~~a~~~lg~~~~~~~~ 152 (336)
-....++++.|...|.+.+...+. ++..+..++.++. .+++++|+..++++.+. +++..+..+..++...++
T Consensus 53 La~~~~~~~~A~~ay~~l~~~~~~--~~~~~~~l~~l~~-----~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 125 (280)
T PF13429_consen 53 LAWSLGDYDEAIEAYEKLLASDKA--NPQDYERLIQLLQ-----DGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGD 125 (280)
T ss_dssp ------------------------------------------------------------------------H-HHHTT-
T ss_pred cccccccccccccccccccccccc--ccccccccccccc-----cccccccccccccccccccccchhhHHHHHHHHHhH
Confidence 345678999999889988877555 5666666777643 47999999999988775 567777788888999999
Q ss_pred HHHHHHHHHHHHHc----CCHHHHHHHHHHHHH----HHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHH
Q 019734 153 KEAAISLYRQAAVL----GDPAGQFNLGISYLQ----EEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAAR 222 (336)
Q Consensus 153 ~~~A~~~~~~a~~~----~~~~a~~~Lg~~~~~----~~A~~~~~ka~~~--~~~~a~~~lg~~~~~g~g~~~~~~~A~~ 222 (336)
++++...+.++... .++..++.+|.++.. ++|+.+|+++++. +++.+...++.++.. .++.+++..
T Consensus 126 ~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~----~~~~~~~~~ 201 (280)
T PF13429_consen 126 YDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLID----MGDYDEARE 201 (280)
T ss_dssp HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCT----TCHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----CCChHHHHH
Confidence 99999999997643 577889999999998 9999999999875 688999999999987 788888777
Q ss_pred HHHHHHH--CCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH--cCCHHHHHHHHHHhhccCCHHHHHHHHHHHHH
Q 019734 223 WYLRAAE--GGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAAD--CGHGKAQLEHGLGLFTEGEMMKAVVYLELATR 297 (336)
Q Consensus 223 ~~~~a~~--~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~ 297 (336)
.++.... +.++..+..+|.+|... +++++|+.+|+++.. .+++.....+|.++...|+.++|..+++++.+
T Consensus 202 ~l~~~~~~~~~~~~~~~~la~~~~~l----g~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 202 ALKRLLKAAPDDPDLWDALAAAYLQL----GRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHH-HTSCCHCHHHHHHHHHH----T-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-----------------
T ss_pred HHHHHHHHCcCHHHHHHHHHHHhccc----ccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 7766533 46777788899999753 399999999999988 47788999999999999999999999999875
No 48
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.41 E-value=4e-10 Score=108.67 Aligned_cols=247 Identities=14% Similarity=0.086 Sum_probs=176.7
Q ss_pred HHHHHHHhcCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHH
Q 019734 67 DVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAG 144 (336)
Q Consensus 67 ~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg 144 (336)
.++-.|...|..|++++|..++....+..|. ++.+++.||.+|.+ .||.+++..++-.|+-+ ++.+-|..++
T Consensus 141 ~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~--~~~ay~tL~~IyEq----rGd~eK~l~~~llAAHL~p~d~e~W~~la 214 (895)
T KOG2076|consen 141 QLLGEANNLFARGDLEEAEEILMEVIKQDPR--NPIAYYTLGEIYEQ----RGDIEKALNFWLLAAHLNPKDYELWKRLA 214 (895)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCcc--chhhHHHHHHHHHH----cccHHHHHHHHHHHHhcCCCChHHHHHHH
Confidence 4578888899999999999999999999988 89999999999999 58999999999998877 5789999999
Q ss_pred HHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHH-----------------------------------------
Q 019734 145 LMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQ----------------------------------------- 181 (336)
Q Consensus 145 ~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~----------------------------------------- 181 (336)
......|..++|+-+|.+|++. .+.+-.+....+|..
T Consensus 215 dls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~ 294 (895)
T KOG2076|consen 215 DLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHN 294 (895)
T ss_pred HHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999976 344555555555553
Q ss_pred --HHHHHHHHHHHHcC----CHHHHHHHHHHHhcCCCCccCHHHHHHHHHH-----------------------------
Q 019734 182 --EEAVKLLYQASIAG----HVRAQYQLALCLHRGRGVDFNLQEAARWYLR----------------------------- 226 (336)
Q Consensus 182 --~~A~~~~~ka~~~~----~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~----------------------------- 226 (336)
+.|++.++.++... ..+-...++.+|.. .+.+++|......
T Consensus 295 ~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~----~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~ 370 (895)
T KOG2076|consen 295 ERERAAKALEGALSKEKDEASLEDLNILAELFLK----NKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEV 370 (895)
T ss_pred HHHHHHHHHHHHHhhccccccccHHHHHHHHHHH----hHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccC
Confidence 44444444443311 00111112222211 1111111111100
Q ss_pred --------------------------------HHH-----CCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc---
Q 019734 227 --------------------------------AAE-----GGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--- 266 (336)
Q Consensus 227 --------------------------------a~~-----~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~--- 266 (336)
..+ ..+++-++.++.+|..-. .+++|+.+|......
T Consensus 371 ~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~----~~~~Al~~l~~i~~~~~~ 446 (895)
T KOG2076|consen 371 GKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIG----KYKEALRLLSPITNREGY 446 (895)
T ss_pred CCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcc----cHHHHHHHHHHHhcCccc
Confidence 000 124566778888886533 899999999999874
Q ss_pred CCHHHHHHHHHHhhccCCHHHHHHHHHHHHHc--CcHHHHHHHHHHHhhcChhcHHHHHHHHHHh
Q 019734 267 GHGKAQLEHGLGLFTEGEMMKAVVYLELATRA--GETAADHVKNVILQQLSATSRDRAMLVVDSW 329 (336)
Q Consensus 267 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~--~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~ 329 (336)
++...++.+|.||...|.+++|+.+|++++.. ++.++...+..++..+ +++++|.+.+..+
T Consensus 447 ~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~--g~~EkalEtL~~~ 509 (895)
T KOG2076|consen 447 QNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQL--GNHEKALETLEQI 509 (895)
T ss_pred cchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhc--CCHHHHHHHHhcc
Confidence 45678899999999999999999999999976 5667777777776654 4556776665553
No 49
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.38 E-value=9.9e-10 Score=94.88 Aligned_cols=255 Identities=15% Similarity=0.063 Sum_probs=194.4
Q ss_pred ChHHHHHHHHhcCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcC------CH
Q 019734 64 LPFDVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG------ST 137 (336)
Q Consensus 64 ~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~~------~~ 137 (336)
+|...++... .+-+.+-++|++++...++..+. ..+++..||.+|.. .|..++|+..-...++.. -.
T Consensus 35 lsr~Yv~GlN-fLLs~Q~dKAvdlF~e~l~~d~~--t~e~~ltLGnLfRs----RGEvDRAIRiHQ~L~~spdlT~~qr~ 107 (389)
T COG2956 35 LSRDYVKGLN-FLLSNQPDKAVDLFLEMLQEDPE--TFEAHLTLGNLFRS----RGEVDRAIRIHQTLLESPDLTFEQRL 107 (389)
T ss_pred ccHHHHhHHH-HHhhcCcchHHHHHHHHHhcCch--hhHHHHHHHHHHHh----cchHHHHHHHHHHHhcCCCCchHHHH
Confidence 4444444433 34556667888888888886655 78999999999999 589999999877766652 24
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHH----HHHHHHHHHHHHcCCHH-------HHHHHH
Q 019734 138 LAMVDAGLMYWEMDKKEAAISLYRQAAVLGD--PAGQFNLGISYLQ----EEAVKLLYQASIAGHVR-------AQYQLA 204 (336)
Q Consensus 138 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~--~~a~~~Lg~~~~~----~~A~~~~~ka~~~~~~~-------a~~~lg 204 (336)
.|.+.||.-|...|-++.|...|...++.+. ..|.-.|-.+|.. ++|+..=++.+..+.-. -+..|+
T Consensus 108 lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELA 187 (389)
T COG2956 108 LALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELA 187 (389)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHH
Confidence 6889999999999999999999999998643 5788889999987 89999888887764322 245566
Q ss_pred HHHhcCCCCccCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCC---HHHHHHHHHHh
Q 019734 205 LCLHRGRGVDFNLQEAARWYLRAAE--GGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGH---GKAQLEHGLGL 279 (336)
Q Consensus 205 ~~~~~g~g~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~~~---~~a~~~lg~~~ 279 (336)
..+.. ..|.++|+.++.||++ +..+.+-..+|.++.. .| ++.+|++.+++.+++++ +.....|-.+|
T Consensus 188 q~~~~----~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~-~g---~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y 259 (389)
T COG2956 188 QQALA----SSDVDRARELLKKALQADKKCVRASIILGRVELA-KG---DYQKAVEALERVLEQNPEYLSEVLEMLYECY 259 (389)
T ss_pred HHHhh----hhhHHHHHHHHHHHHhhCccceehhhhhhHHHHh-cc---chHHHHHHHHHHHHhChHHHHHHHHHHHHHH
Confidence 65555 6899999999999965 4678888999999964 33 99999999999998866 45567888999
Q ss_pred hccCCHHHHHHHHHHHHHcC-cHHHHHHHHHHHhhcChhcHHHHHHHHHHhhcCCCC
Q 019734 280 FTEGEMMKAVVYLELATRAG-ETAADHVKNVILQQLSATSRDRAMLVVDSWRAMPSL 335 (336)
Q Consensus 280 ~~~~~~~~A~~~~~~A~~~~-~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 335 (336)
...|+.++...|+.++.+.. ..++...+..+.... .-.+.|.....+-+..+|+
T Consensus 260 ~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~--~G~~~Aq~~l~~Ql~r~Pt 314 (389)
T COG2956 260 AQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQ--EGIDAAQAYLTRQLRRKPT 314 (389)
T ss_pred HHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHh--hChHHHHHHHHHHHhhCCc
Confidence 99999999999999999864 334444444433332 3456666666666666664
No 50
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.35 E-value=2.2e-09 Score=100.55 Aligned_cols=124 Identities=12% Similarity=0.048 Sum_probs=86.4
Q ss_pred CHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHC--CCHHHH--HHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCH
Q 019734 196 HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAM--YNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHG 269 (336)
Q Consensus 196 ~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~--~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~--~~~ 269 (336)
++.....++..+.. .+++++|...++++++. ++.... ......... +.+.+++...++++.+. +++
T Consensus 262 ~~~l~~~~a~~l~~----~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~----~~~~~~~~~~~e~~lk~~p~~~ 333 (409)
T TIGR00540 262 NIALKIALAEHLID----CDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLK----PEDNEKLEKLIEKQAKNVDDKP 333 (409)
T ss_pred CHHHHHHHHHHHHH----CCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcC----CCChHHHHHHHHHHHHhCCCCh
Confidence 66778888888877 79999999999999874 333211 111111212 34788999999999875 667
Q ss_pred --HHHHHHHHHhhccCCHHHHHHHHHH--HHHcC-cHHHHHHHHHHHhhcChhcHHHHHHHHHHh
Q 019734 270 --KAQLEHGLGLFTEGEMMKAVVYLEL--ATRAG-ETAADHVKNVILQQLSATSRDRAMLVVDSW 329 (336)
Q Consensus 270 --~a~~~lg~~~~~~~~~~~A~~~~~~--A~~~~-~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~ 329 (336)
.....+|++++..|++++|..+|++ +++.. ++.....++.++..+ ++.++|.++.++-
T Consensus 334 ~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~--g~~~~A~~~~~~~ 396 (409)
T TIGR00540 334 KCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQA--GDKAEAAAMRQDS 396 (409)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHH
Confidence 6677999999999999999999995 65543 333344556555554 4566676666654
No 51
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.35 E-value=1.2e-09 Score=98.98 Aligned_cols=218 Identities=15% Similarity=0.097 Sum_probs=173.0
Q ss_pred HHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHH
Q 019734 101 AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLG 176 (336)
Q Consensus 101 ~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg 176 (336)
+.++...|.-++. .+|.-.|..-|.+++.+. +..-+..+|.+|....+.++....|.+|.+. .++..++..|
T Consensus 326 A~al~~~gtF~fL----~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRg 401 (606)
T KOG0547|consen 326 AEALLLRGTFHFL----KGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRG 401 (606)
T ss_pred HHHHHHhhhhhhh----cCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHH
Confidence 5556556665554 789999999999999984 4444888999999999999999999999765 7899999999
Q ss_pred HHHHH----HHHHHHHHHHHHcC--CHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCC
Q 019734 177 ISYLQ----EEAVKLLYQASIAG--HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEG 248 (336)
Q Consensus 177 ~~~~~----~~A~~~~~ka~~~~--~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~g 248 (336)
.++.- ++|+.-|++++.++ +.-++..++.+.+. ...++++...|+.+... .-++.+...|.++..
T Consensus 402 Qm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr----~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtD--- 474 (606)
T KOG0547|consen 402 QMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYR----QHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTD--- 474 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhh---
Confidence 99877 99999999998875 56677777777666 67899999999999764 678888899999965
Q ss_pred CcccHHHHHHHHHHHHHcCCH--------HHHHHHHHHhh-ccCCHHHHHHHHHHHHHcCcHHHHHHHHHHHhhcChhcH
Q 019734 249 LPLSHRQARKWMKRAADCGHG--------KAQLEHGLGLF-TEGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSR 319 (336)
Q Consensus 249 ~~~~~~~A~~~~~~a~~~~~~--------~a~~~lg~~~~-~~~~~~~A~~~~~~A~~~~~~~a~~~~~~~~~~~~~~~~ 319 (336)
.+++++|++.|.+|+++.+. ..+.+-|.+.. -.+|+.+|...+++|++.++.--...-+.....+..++.
T Consensus 475 -qqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i 553 (606)
T KOG0547|consen 475 -QQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKI 553 (606)
T ss_pred -HHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhH
Confidence 45999999999999986432 22333333222 258999999999999999876555555666667778888
Q ss_pred HHHHHHHHHhh
Q 019734 320 DRAMLVVDSWR 330 (336)
Q Consensus 320 ~~a~~~~~~~~ 330 (336)
++|++++.+-.
T Consensus 554 ~eAielFEksa 564 (606)
T KOG0547|consen 554 DEAIELFEKSA 564 (606)
T ss_pred HHHHHHHHHHH
Confidence 99988876543
No 52
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.35 E-value=1.8e-11 Score=108.55 Aligned_cols=245 Identities=19% Similarity=0.113 Sum_probs=152.0
Q ss_pred HHHHHHhcCCChhHHhhhHHHHHHHHHhCCC--CCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHH--------HcCCH
Q 019734 68 VLNKIAASFTLPQLRAASLVCKSWNDALRPL--REAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGA--------ARGST 137 (336)
Q Consensus 68 ~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~--------~~~~~ 137 (336)
+......++..|+.+..+..++..++...+. --...+-.||.+|+. .+|+++|++|-.--+ ++|.+
T Consensus 20 LalEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfy----L~DY~kAl~yH~hDltlar~lgdklGEA 95 (639)
T KOG1130|consen 20 LALEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFY----LKDYEKALKYHTHDLTLARLLGDKLGEA 95 (639)
T ss_pred HHHHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhh----HhhHHHHHhhhhhhHHHHHHhcchhccc
Confidence 3445556788899999988888888776542 123456678888877 689999998865322 12567
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHH----HcC----CHHHHHHHHHHHHH------------------------HHHH
Q 019734 138 LAMVDAGLMYWEMDKKEAAISLYRQAA----VLG----DPAGQFNLGISYLQ------------------------EEAV 185 (336)
Q Consensus 138 ~a~~~lg~~~~~~~~~~~A~~~~~~a~----~~~----~~~a~~~Lg~~~~~------------------------~~A~ 185 (336)
.+.-+||..+...|.+++|+.+..+-+ +.| ...|+|+||.+|.. +.|+
T Consensus 96 KssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av 175 (639)
T KOG1130|consen 96 KSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAV 175 (639)
T ss_pred cccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHH
Confidence 788899999999999999999977754 334 46799999999987 4455
Q ss_pred HHHHHHHH----cCC----HHHHHHHHHHHhcCCCCccCHHHHHHHHHHHH----HCCC----HHHHHHHHHHHHcCCCC
Q 019734 186 KLLYQASI----AGH----VRAQYQLALCLHRGRGVDFNLQEAARWYLRAA----EGGY----VRAMYNTSLCYSFGEGL 249 (336)
Q Consensus 186 ~~~~ka~~----~~~----~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~----~~~~----~~a~~~lg~~~~~~~g~ 249 (336)
++|+.-++ .++ ..++-+||..|+- .+|++.|+.+-+.-+ +-|+ -.|+.+||.||..
T Consensus 176 ~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYl----LGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hif---- 247 (639)
T KOG1130|consen 176 KFYMENLELSEKLGDRLAQGRAYGNLGNTYYL----LGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIF---- 247 (639)
T ss_pred HHHHHHHHHHHHhhhHHhhcchhcccCceeee----eccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhh----
Confidence 55543332 122 2344555555554 667777766554322 2233 3455666666643
Q ss_pred cccHHHHHHHHHHHHH----cCC----HHHHHHHHHHhhccCCHHHHHHHHHHHHH--------cCcHHHHHHHHHHHhh
Q 019734 250 PLSHRQARKWMKRAAD----CGH----GKAQLEHGLGLFTEGEMMKAVVYLELATR--------AGETAADHVKNVILQQ 313 (336)
Q Consensus 250 ~~~~~~A~~~~~~a~~----~~~----~~a~~~lg~~~~~~~~~~~A~~~~~~A~~--------~~~~~a~~~~~~~~~~ 313 (336)
..+++.|+++|++.+. .|+ +..+|.||..|+-..++++|+.|+.+=+. .|...++..++..+..
T Consensus 248 lg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~a 327 (639)
T KOG1130|consen 248 LGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNA 327 (639)
T ss_pred hcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 2266677777666543 233 33456677766666677777766665321 2344455555544444
Q ss_pred cChhcHHHHHHHH
Q 019734 314 LSATSRDRAMLVV 326 (336)
Q Consensus 314 ~~~~~~~~a~~~~ 326 (336)
+ ++.++|+..+
T Consensus 328 l--g~h~kAl~fa 338 (639)
T KOG1130|consen 328 L--GEHRKALYFA 338 (639)
T ss_pred h--hhHHHHHHHH
Confidence 3 2334444433
No 53
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.35 E-value=1.5e-09 Score=108.49 Aligned_cols=262 Identities=9% Similarity=-0.030 Sum_probs=181.1
Q ss_pred ChHHHHHHHHhcCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcC--CHHHHH
Q 019734 64 LPFDVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMV 141 (336)
Q Consensus 64 ~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~ 141 (336)
.+.....++...+..|++..|...+.+.++..|. ++.+.+.+..++.. .++.++|+.++++++... +..+..
T Consensus 33 ~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~--~~~av~dll~l~~~----~G~~~~A~~~~eka~~p~n~~~~~ll 106 (822)
T PRK14574 33 MADTQYDSLIIRARAGDTAPVLDYLQEESKAGPL--QSGQVDDWLQIAGW----AGRDQEVIDVYERYQSSMNISSRGLA 106 (822)
T ss_pred chhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCcc--chhhHHHHHHHHHH----cCCcHHHHHHHHHhccCCCCCHHHHH
Confidence 3446677888889999999999999999999877 43333366666655 489999999999999654 445555
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHH----HHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCcc
Q 019734 142 DAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQ----EEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDF 215 (336)
Q Consensus 142 ~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~----~~A~~~~~ka~~~~~~~a~~~lg~~~~~g~g~~~ 215 (336)
.+|.++...|++++|+..|+++++. +++.++..|+.+|.. ++|+..++++....-....+ ++..|.... .+
T Consensus 107 alA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~--~~ 183 (822)
T PRK14574 107 SAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRA--TD 183 (822)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHh--cc
Confidence 6688999999999999999999865 788999888888877 88888888887654222222 444443211 45
Q ss_pred CHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCC---------------------------------------------
Q 019734 216 NLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEG--------------------------------------------- 248 (336)
Q Consensus 216 ~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~g--------------------------------------------- 248 (336)
+..+|+..|+++++. ++.+....+...+.....
T Consensus 184 ~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r 263 (822)
T PRK14574 184 RNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETER 263 (822)
T ss_pred hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhh
Confidence 555588888876542 222222222222110000
Q ss_pred ----------------------------------------CcccHHHHHHHHHHHHHcC---CHHHHHHHHHHhhccCCH
Q 019734 249 ----------------------------------------LPLSHRQARKWMKRAADCG---HGKAQLEHGLGLFTEGEM 285 (336)
Q Consensus 249 ----------------------------------------~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~ 285 (336)
..+++.+++..|+..-..+ +..+...+|..|...+++
T Consensus 264 ~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P 343 (822)
T PRK14574 264 FDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLP 343 (822)
T ss_pred HHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCc
Confidence 0113444444444443322 344567889999999999
Q ss_pred HHHHHHHHHHHHcC------cHHHHHHHHHHHhhcChhcHHHHHHHHHHhhcCCC
Q 019734 286 MKAVVYLELATRAG------ETAADHVKNVILQQLSATSRDRAMLVVDSWRAMPS 334 (336)
Q Consensus 286 ~~A~~~~~~A~~~~------~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 334 (336)
++|...|+.++... +.+.....+.++.++..++.++|..+++.+.+..|
T Consensus 344 ~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p 398 (822)
T PRK14574 344 EKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTP 398 (822)
T ss_pred HHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCC
Confidence 99999999998753 22333346788999999999999999999998666
No 54
>PLN02789 farnesyltranstransferase
Probab=99.27 E-value=6.7e-09 Score=93.27 Aligned_cols=199 Identities=10% Similarity=-0.082 Sum_probs=110.0
Q ss_pred CChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCH-
Q 019734 77 TLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKK- 153 (336)
Q Consensus 77 ~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~- 153 (336)
..+..++|..++.+.++..|+ +..+++..|.++..- ..++++++.++++++.. .+..+++..+.++...++.
T Consensus 49 ~~e~serAL~lt~~aI~lnP~--~ytaW~~R~~iL~~L---~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~ 123 (320)
T PLN02789 49 SDERSPRALDLTADVIRLNPG--NYTVWHFRRLCLEAL---DADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDA 123 (320)
T ss_pred cCCCCHHHHHHHHHHHHHCch--hHHHHHHHHHHHHHc---chhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchh
Confidence 456666666666666666655 666666666666551 12466667776666655 3556666666666555542
Q ss_pred -HHHHHHHHHHHHc--CCHHHHHHHHHHHHH----HHHHHHHHHHHHc--CCHHHHHHHHHHHhcC---CCCccCHHHHH
Q 019734 154 -EAAISLYRQAAVL--GDPAGQFNLGISYLQ----EEAVKLLYQASIA--GHVRAQYQLALCLHRG---RGVDFNLQEAA 221 (336)
Q Consensus 154 -~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~----~~A~~~~~ka~~~--~~~~a~~~lg~~~~~g---~g~~~~~~~A~ 221 (336)
++++.++.++++. .+..++.+.|.++.. +++++++.++++. .+..|+++.|.++... .+.....+.++
T Consensus 124 ~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el 203 (320)
T PLN02789 124 ANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSEL 203 (320)
T ss_pred hHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHH
Confidence 5566666666543 556666666666655 5666666666553 3556666666655431 01112234455
Q ss_pred HHHHHHH--HCCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhh
Q 019734 222 RWYLRAA--EGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLF 280 (336)
Q Consensus 222 ~~~~~a~--~~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~ 280 (336)
.+..+++ .+.+..++++++.++...........+|...+.+++.. ....+.-.|+.+|.
T Consensus 204 ~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~ 266 (320)
T PLN02789 204 KYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLC 266 (320)
T ss_pred HHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHH
Confidence 5555554 33566666666666644110012334455555555442 23444455555554
No 55
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.27 E-value=2.8e-09 Score=92.16 Aligned_cols=206 Identities=18% Similarity=0.100 Sum_probs=160.0
Q ss_pred cCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC------HHHHHHHHHHHHH----HHHH
Q 019734 118 RKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGD------PAGQFNLGISYLQ----EEAV 185 (336)
Q Consensus 118 ~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~------~~a~~~Lg~~~~~----~~A~ 185 (336)
..+.++|+..|-..++.+ ..++.+.||.++...|+.++||..-+-.++.-+ .-|.+.||.=|+. +.|.
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE 127 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE 127 (389)
T ss_pred hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 578999999999998874 578999999999999999999999887776532 3577889999988 9999
Q ss_pred HHHHHHHHcC--CHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHCCCHHH-------HHHHHHHHHcCCCCcccHHHH
Q 019734 186 KLLYQASIAG--HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRA-------MYNTSLCYSFGEGLPLSHRQA 256 (336)
Q Consensus 186 ~~~~ka~~~~--~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~~~~~a-------~~~lg~~~~~~~g~~~~~~~A 256 (336)
..|...++.+ -..|.-.|-.+|.. .+++.+|++.-++.+..+.-.- +..|+..+.. ..+.++|
T Consensus 128 ~~f~~L~de~efa~~AlqqLl~IYQ~----treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~----~~~~d~A 199 (389)
T COG2956 128 DIFNQLVDEGEFAEGALQQLLNIYQA----TREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALA----SSDVDRA 199 (389)
T ss_pred HHHHHHhcchhhhHHHHHHHHHHHHH----hhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhh----hhhHHHH
Confidence 9999999864 45789999999998 8999999999998877654333 3344444432 4599999
Q ss_pred HHHHHHHHHc--CCHHHHHHHHHHhhccCCHHHHHHHHHHHHHcCcHH---HHHHHHHHHhhcChhcHHHHHHHHHHhhc
Q 019734 257 RKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETA---ADHVKNVILQQLSATSRDRAMLVVDSWRA 331 (336)
Q Consensus 257 ~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~~~~---a~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 331 (336)
+.++.+|+.. ....+-..+|.++...|++++|++.|+...+.++.- ....+...+.++ ++.+..........+
T Consensus 200 ~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~l--g~~~~~~~fL~~~~~ 277 (389)
T COG2956 200 RELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQL--GKPAEGLNFLRRAME 277 (389)
T ss_pred HHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHH
Confidence 9999999875 456777999999999999999999999999987643 333333333333 344445555555544
Q ss_pred CC
Q 019734 332 MP 333 (336)
Q Consensus 332 ~~ 333 (336)
.+
T Consensus 278 ~~ 279 (389)
T COG2956 278 TN 279 (389)
T ss_pred cc
Confidence 43
No 56
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.26 E-value=2.1e-09 Score=101.11 Aligned_cols=218 Identities=17% Similarity=0.097 Sum_probs=162.6
Q ss_pred HHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc-------CCH---HHHHHHHHHHhcCCCHHHHHHHHHHHHHc----
Q 019734 101 AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR-------GST---LAMVDAGLMYWEMDKKEAAISLYRQAAVL---- 166 (336)
Q Consensus 101 ~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~-------~~~---~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---- 166 (336)
...+..||.+|.. .+++++|+.+++.|++. .++ ..+..+|.+|...+++.+|+..|++|+..
T Consensus 199 ~~~~~~La~~y~~----~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~ 274 (508)
T KOG1840|consen 199 LRTLRNLAEMYAV----QGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEV 274 (508)
T ss_pred HHHHHHHHHHHHH----hccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence 4466679999998 69999999999999976 343 23445999999999999999999999842
Q ss_pred ---CC---HHHHHHHHHHHHH----HHHHHHHHHHHHc-------C---CHHHHHHHHHHHhcCCCCccCHHHHHHHHHH
Q 019734 167 ---GD---PAGQFNLGISYLQ----EEAVKLLYQASIA-------G---HVRAQYQLALCLHRGRGVDFNLQEAARWYLR 226 (336)
Q Consensus 167 ---~~---~~a~~~Lg~~~~~----~~A~~~~~ka~~~-------~---~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~ 226 (336)
.+ +..+.+||.+|.. ++|..++++|++. . ....+.+++.++.. .+++++|+.+|++
T Consensus 275 ~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~----~~~~Eea~~l~q~ 350 (508)
T KOG1840|consen 275 FGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQS----MNEYEEAKKLLQK 350 (508)
T ss_pred cCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHH----hcchhHHHHHHHH
Confidence 22 4678999999988 8888888887652 1 23456788888887 8899999999999
Q ss_pred HHHC-------CC---HHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc-----C-----CHHHHHHHHHHhhccCCHH
Q 019734 227 AAEG-------GY---VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC-----G-----HGKAQLEHGLGLFTEGEMM 286 (336)
Q Consensus 227 a~~~-------~~---~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~-----~-----~~~a~~~lg~~~~~~~~~~ 286 (336)
++.. .+ +....+||.+|.. .+++++|..+|++|+.. + ...+..+||..|.+.+++.
T Consensus 351 al~i~~~~~g~~~~~~a~~~~nl~~l~~~----~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~ 426 (508)
T KOG1840|consen 351 ALKIYLDAPGEDNVNLAKIYANLAELYLK----MGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYE 426 (508)
T ss_pred HHHHHHhhccccchHHHHHHHHHHHHHHH----hcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccc
Confidence 8642 22 4557799999975 33999999999999873 1 2456689999999999999
Q ss_pred HHHHHHHHHHHc------CcHHHH-HHHHHHHhhcChhcHHHHHHHHHHhh
Q 019734 287 KAVVYLELATRA------GETAAD-HVKNVILQQLSATSRDRAMLVVDSWR 330 (336)
Q Consensus 287 ~A~~~~~~A~~~------~~~~a~-~~~~~~~~~~~~~~~~~a~~~~~~~~ 330 (336)
+|...|.++... ++++.. .+.+....+...++.++|.++...+.
T Consensus 427 ~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 427 EAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred hHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 998888888653 232222 22333444445566777777665543
No 57
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.26 E-value=5.6e-10 Score=103.07 Aligned_cols=208 Identities=15% Similarity=0.096 Sum_probs=155.4
Q ss_pred HHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHH
Q 019734 105 LRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYL 180 (336)
Q Consensus 105 ~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~ 180 (336)
|.-|..+.. .|++.+|+-.|+.|+.. .|.+||..||.++.+..+-..||..++++++. ++.+++..||..|.
T Consensus 289 f~eG~~lm~----nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSyt 364 (579)
T KOG1125|consen 289 FKEGCNLMK----NGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYT 364 (579)
T ss_pred HHHHHHHHh----cCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHh
Confidence 346666666 58899999999999988 58999999999999999999999999999866 79999999999998
Q ss_pred H----HHHHHHHHHHHHcCCHHHHHHHHHHHhcCC-----C-C-ccCHHHHHHHHHHHHH-C---CCHHHHHHHHHHHHc
Q 019734 181 Q----EEAVKLLYQASIAGHVRAQYQLALCLHRGR-----G-V-DFNLQEAARWYLRAAE-G---GYVRAMYNTSLCYSF 245 (336)
Q Consensus 181 ~----~~A~~~~~ka~~~~~~~a~~~lg~~~~~g~-----g-~-~~~~~~A~~~~~~a~~-~---~~~~a~~~lg~~~~~ 245 (336)
. .+|+.++.+=+....+..+.-.+. ..+. + + ......-.+.|..++. . .+++.+..||.+|..
T Consensus 365 Neg~q~~Al~~L~~Wi~~~p~y~~l~~a~--~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~l 442 (579)
T KOG1125|consen 365 NEGLQNQALKMLDKWIRNKPKYVHLVSAG--ENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNL 442 (579)
T ss_pred hhhhHHHHHHHHHHHHHhCccchhccccC--ccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhc
Confidence 8 889999988776544433222211 1111 0 0 1112223344555543 2 489999999999964
Q ss_pred CCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhccCCHHHHHHHHHHHHHc--CcHHHHHHHHHHHhhcChhcHHH
Q 019734 246 GEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRA--GETAADHVKNVILQQLSATSRDR 321 (336)
Q Consensus 246 ~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~--~~~~a~~~~~~~~~~~~~~~~~~ 321 (336)
.+++++|+.+|+.|+.. .+...+..||-++-...+.++|+..|.+|+.+ +...+.+++++.. +.-+...+
T Consensus 443 ----s~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~--mNlG~ykE 516 (579)
T KOG1125|consen 443 ----SGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISC--MNLGAYKE 516 (579)
T ss_pred ----chHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhh--hhhhhHHH
Confidence 44999999999999975 55667899999999999999999999999987 4556666666553 44444444
Q ss_pred HHH
Q 019734 322 AML 324 (336)
Q Consensus 322 a~~ 324 (336)
|..
T Consensus 517 A~~ 519 (579)
T KOG1125|consen 517 AVK 519 (579)
T ss_pred HHH
Confidence 444
No 58
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.25 E-value=1.8e-08 Score=94.01 Aligned_cols=243 Identities=12% Similarity=0.027 Sum_probs=155.9
Q ss_pred HHHHHhcCCChhHHhhhHHHHHHHHHhCCC-CCHHHHHHHHHHH-hcCCCCcCCHHHHHHHHHHHHHcC--CHHHH-HHH
Q 019734 69 LNKIAASFTLPQLRAASLVCKSWNDALRPL-REAMVLLRWGKRF-KHGRGVRKNLDKALDSFLKGAARG--STLAM-VDA 143 (336)
Q Consensus 69 l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~a~~~lg~~~-~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~-~~l 143 (336)
+..+...+..|++.+|. +.+...++. +++...+.++-.. .. .++++.|..+|+++.+.. +..+. ...
T Consensus 88 ~~~gl~a~~eGd~~~A~----k~l~~~~~~~~~p~l~~llaA~aA~~----~g~~~~A~~~l~~A~~~~~~~~~~~~l~~ 159 (398)
T PRK10747 88 TEQALLKLAEGDYQQVE----KLMTRNADHAEQPVVNYLLAAEAAQQ----RGDEARANQHLERAAELADNDQLPVEITR 159 (398)
T ss_pred HHHHHHHHhCCCHHHHH----HHHHHHHhcccchHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhcCCcchHHHHHHH
Confidence 44555555667777664 333333332 2344444443333 33 357777777777776642 21122 233
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHH----HHHHHHHHHHHH------------------------
Q 019734 144 GLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQ----EEAVKLLYQASI------------------------ 193 (336)
Q Consensus 144 g~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~----~~A~~~~~ka~~------------------------ 193 (336)
+.++...|++++|+..+++..+. +++.+...++.+|.. ++|+..+.+..+
T Consensus 160 a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~ 239 (398)
T PRK10747 160 VRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQA 239 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 66777777777777777776543 566777666666665 333322222211
Q ss_pred --------------------cCCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHcCCCCccc
Q 019734 194 --------------------AGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGG-YVRAMYNTSLCYSFGEGLPLS 252 (336)
Q Consensus 194 --------------------~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~~-~~~a~~~lg~~~~~~~g~~~~ 252 (336)
.+++.+...++..+.. .++.++|...++++.+.. ++......+.+. .++
T Consensus 240 ~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~----~g~~~~A~~~L~~~l~~~~~~~l~~l~~~l~------~~~ 309 (398)
T PRK10747 240 MADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIE----CDDHDTAQQIILDGLKRQYDERLVLLIPRLK------TNN 309 (398)
T ss_pred HHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhcCCCHHHHHHHhhcc------CCC
Confidence 2356677777888777 799999999999998753 443333333332 238
Q ss_pred HHHHHHHHHHHHHc--CCHHHHHHHHHHhhccCCHHHHHHHHHHHHHcCcHHHH-HHHHHHHhhcChhcHHHHHHHHHHh
Q 019734 253 HRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAAD-HVKNVILQQLSATSRDRAMLVVDSW 329 (336)
Q Consensus 253 ~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~~~~a~-~~~~~~~~~~~~~~~~~a~~~~~~~ 329 (336)
.++++..+++..+. +++...+.+|.++...+++++|..+|+++++..+.... ..+..++... ++.++|.++.++-
T Consensus 310 ~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~--g~~~~A~~~~~~~ 387 (398)
T PRK10747 310 PEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRL--HKPEEAAAMRRDG 387 (398)
T ss_pred hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHH
Confidence 89999999988875 67888899999999999999999999999998655443 5666666654 4567777777665
Q ss_pred hc
Q 019734 330 RA 331 (336)
Q Consensus 330 ~~ 331 (336)
..
T Consensus 388 l~ 389 (398)
T PRK10747 388 LM 389 (398)
T ss_pred Hh
Confidence 43
No 59
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.25 E-value=1.9e-08 Score=100.65 Aligned_cols=254 Identities=9% Similarity=-0.080 Sum_probs=164.6
Q ss_pred HHHHHhcCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHH
Q 019734 69 LNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG-STLAMVDAGLMY 147 (336)
Q Consensus 69 l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~~-~~~a~~~lg~~~ 147 (336)
+..+......|++.+|+.+++++++..|+ ++.+++.|+.+|.. .++.++|+..++++.... .......++.++
T Consensus 106 lalA~ly~~~gdyd~Aiely~kaL~~dP~--n~~~l~gLa~~y~~----~~q~~eAl~~l~~l~~~dp~~~~~l~layL~ 179 (822)
T PRK14574 106 ASAARAYRNEKRWDQALALWQSSLKKDPT--NPDLISGMIMTQAD----AGRGGVVLKQATELAERDPTVQNYMTLSYLN 179 (822)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHhh----cCCHHHHHHHHHHhcccCcchHHHHHHHHHH
Confidence 33444556779999999999999999888 68888888888877 588999999999988763 222223444455
Q ss_pred hcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHH--------------------------------------------
Q 019734 148 WEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQ-------------------------------------------- 181 (336)
Q Consensus 148 ~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~-------------------------------------------- 181 (336)
...++..+|+..|+++++. ++.+.+..+..++..
T Consensus 180 ~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~ 259 (822)
T PRK14574 180 RATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRS 259 (822)
T ss_pred HhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhccccccc
Confidence 4456666699999988754 455555444443333
Q ss_pred -------------------------------------------------HHHHHHHHHHHHcC---CHHHHHHHHHHHhc
Q 019734 182 -------------------------------------------------EEAVKLLYQASIAG---HVRAQYQLALCLHR 209 (336)
Q Consensus 182 -------------------------------------------------~~A~~~~~ka~~~~---~~~a~~~lg~~~~~ 209 (336)
.+++..|+..-..+ .+-+...+|..|..
T Consensus 260 ~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~ 339 (822)
T PRK14574 260 ETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYID 339 (822)
T ss_pred chhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHh
Confidence 22222222221111 11223334444443
Q ss_pred CCCCccCHHHHHHHHHHHHHCC---------------------------------------------------------C
Q 019734 210 GRGVDFNLQEAARWYLRAAEGG---------------------------------------------------------Y 232 (336)
Q Consensus 210 g~g~~~~~~~A~~~~~~a~~~~---------------------------------------------------------~ 232 (336)
.+.+.+|+..|+.++... .
T Consensus 340 ----~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~ 415 (822)
T PRK14574 340 ----RRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDW 415 (822)
T ss_pred ----cCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccH
Confidence 344455555554432210 1
Q ss_pred HHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhccCCHHHHHHHHHHHHHcCcHHHHHHHHHH
Q 019734 233 VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNVI 310 (336)
Q Consensus 233 ~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~~~~a~~~~~~~ 310 (336)
..+...++.++... ++..+|.+.+++.+.. +++.....++.++...|.+.+|..+++.+....+.+.....+..
T Consensus 416 ~~~~~l~a~~~~~~----gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~ 491 (822)
T PRK14574 416 IEGQTLLVQSLVAL----NDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQA 491 (822)
T ss_pred HHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHH
Confidence 23344445544432 2788888888888764 67777888888899999999999999887777666666666777
Q ss_pred HhhcChhcHHHHHHHHHHhhcCCCCC
Q 019734 311 LQQLSATSRDRAMLVVDSWRAMPSLH 336 (336)
Q Consensus 311 ~~~~~~~~~~~a~~~~~~~~~~~~~~ 336 (336)
...+...+.++|+.+.+.+....|.+
T Consensus 492 ~~al~l~e~~~A~~~~~~l~~~~Pe~ 517 (822)
T PRK14574 492 ETAMALQEWHQMELLTDDVISRSPED 517 (822)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhCCCc
Confidence 77777788888888888888888864
No 60
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.25 E-value=2e-09 Score=92.95 Aligned_cols=169 Identities=15% Similarity=0.033 Sum_probs=104.4
Q ss_pred CCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCH---HHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCH--
Q 019734 99 REAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GST---LAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDP-- 169 (336)
Q Consensus 99 ~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~---~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~-- 169 (336)
..+..++.+|..+.. .+++++|+..|++++.. +++ .+++.+|.++...|++++|+..|+++++. +++
T Consensus 31 ~~~~~~~~~g~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 106 (235)
T TIGR03302 31 WPAEELYEEAKEALD----SGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDA 106 (235)
T ss_pred CCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCch
Confidence 356777777777776 57788888888877765 222 56777888888888888888888887754 333
Q ss_pred -HHHHHHHHHHHH------------HHHHHHHHHHHHc--CCHHH---HHHHHHHHhcCCCCccCHHHHHHHHHHHHHCC
Q 019734 170 -AGQFNLGISYLQ------------EEAVKLLYQASIA--GHVRA---QYQLALCLHRGRGVDFNLQEAARWYLRAAEGG 231 (336)
Q Consensus 170 -~a~~~Lg~~~~~------------~~A~~~~~ka~~~--~~~~a---~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~~ 231 (336)
.+++.+|.++.. ++|+..|+++++. ++..+ ...++.++..
T Consensus 107 ~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~---------------------- 164 (235)
T TIGR03302 107 DYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNR---------------------- 164 (235)
T ss_pred HHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHH----------------------
Confidence 367777777752 4455555555443 12111 1111111100
Q ss_pred CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcC-----CHHHHHHHHHHhhccCCHHHHHHHHHHHHH
Q 019734 232 YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCG-----HGKAQLEHGLGLFTEGEMMKAVVYLELATR 297 (336)
Q Consensus 232 ~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~~-----~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~ 297 (336)
.......+|.+|... +++.+|+.+|++++... .+.+++.+|.++...|++++|..+++....
T Consensus 165 ~~~~~~~~a~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 165 LAGKELYVARFYLKR----GAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred HHHHHHHHHHHHHHc----CChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 011234566666542 27778888888877641 246777888888888888888877766544
No 61
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.23 E-value=5.1e-08 Score=100.23 Aligned_cols=241 Identities=9% Similarity=-0.071 Sum_probs=124.9
Q ss_pred CChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHhcCCCH
Q 019734 77 TLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG---STLAMVDAGLMYWEMDKK 153 (336)
Q Consensus 77 ~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~lg~~~~~~~~~ 153 (336)
..|++++|..++....+.... ++...+..|-..|.. .+++++|+..|+.....+ +...+..|-..|...|+.
T Consensus 484 k~G~vd~A~~vf~eM~~~Gv~-PdvvTynaLI~gy~k----~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~ 558 (1060)
T PLN03218 484 KSGKVDAMFEVFHEMVNAGVE-ANVHTFGALIDGCAR----AGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAV 558 (1060)
T ss_pred hCcCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHH----CcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCH
Confidence 445555555444444433221 345555555555555 356666666666655443 445555666666666666
Q ss_pred HHHHHHHHHHHHc-----CCHHHHHHHHHHHHH----HHHHHHHHHHHHcC---CHHHHHHHHHHHhcCCCCccCHHHHH
Q 019734 154 EAAISLYRQAAVL-----GDPAGQFNLGISYLQ----EEAVKLLYQASIAG---HVRAQYQLALCLHRGRGVDFNLQEAA 221 (336)
Q Consensus 154 ~~A~~~~~~a~~~-----~~~~a~~~Lg~~~~~----~~A~~~~~ka~~~~---~~~a~~~lg~~~~~g~g~~~~~~~A~ 221 (336)
++|...|.+.... .+...+..|-..|.. ++|.+.|++..+.+ +...+..+...|.. .+++++|.
T Consensus 559 deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k----~G~~deAl 634 (1060)
T PLN03218 559 DRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQ----KGDWDFAL 634 (1060)
T ss_pred HHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHh----cCCHHHHH
Confidence 6666666655431 233444444444444 66666666665543 34455555555554 45666666
Q ss_pred HHHHHHHHCC---CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcC---CHHHHHHHHHHhhccCCHHHHHHHHHHH
Q 019734 222 RWYLRAAEGG---YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCG---HGKAQLEHGLGLFTEGEMMKAVVYLELA 295 (336)
Q Consensus 222 ~~~~~a~~~~---~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~A~~~~~~A 295 (336)
..|+.....| +...+..|...|.+ .++.++|.+.++...+.| +...+..|...|.+.|++++|...|++.
T Consensus 635 ~lf~eM~~~Gv~PD~~TynsLI~a~~k----~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM 710 (1060)
T PLN03218 635 SIYDDMKKKGVKPDEVFFSALVDVAGH----AGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDI 710 (1060)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 6666554432 33444444444433 225666666666655543 2344555555566666666666666655
Q ss_pred HHcC-cHHHHHHHHHHHhhcChhcHHHHHHHHHHhh
Q 019734 296 TRAG-ETAADHVKNVILQQLSATSRDRAMLVVDSWR 330 (336)
Q Consensus 296 ~~~~-~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~ 330 (336)
...| .++...+...+......++.++|.++++++.
T Consensus 711 ~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~ 746 (1060)
T PLN03218 711 KSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMK 746 (1060)
T ss_pred HHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4432 2233333333333444455555555555544
No 62
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.21 E-value=9.1e-08 Score=98.41 Aligned_cols=246 Identities=11% Similarity=-0.024 Sum_probs=192.2
Q ss_pred hcCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHh
Q 019734 74 ASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR-----GSTLAMVDAGLMYW 148 (336)
Q Consensus 74 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~-----~~~~a~~~lg~~~~ 148 (336)
.+...|++++|..++....+..-. ++...+..|-..|.. .+++++|...|+..... .+...+..|-..|.
T Consensus 516 gy~k~G~~eeAl~lf~~M~~~Gv~-PD~vTYnsLI~a~~k----~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~ 590 (1060)
T PLN03218 516 GCARAGQVAKAFGAYGIMRSKNVK-PDRVVFNALISACGQ----SGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACA 590 (1060)
T ss_pred HHHHCcCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHH
Confidence 344778999998877776654332 467777777777777 58999999999988652 35677888888999
Q ss_pred cCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHH----HHHHHHHHHHHHcC---CHHHHHHHHHHHhcCCCCccCHH
Q 019734 149 EMDKKEAAISLYRQAAVLG---DPAGQFNLGISYLQ----EEAVKLLYQASIAG---HVRAQYQLALCLHRGRGVDFNLQ 218 (336)
Q Consensus 149 ~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~~~~----~~A~~~~~ka~~~~---~~~a~~~lg~~~~~g~g~~~~~~ 218 (336)
+.|++++|...|++..+.+ ++..+..+...|.. ++|+..|.+..+.| +...+..|...|.. .++++
T Consensus 591 k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k----~G~~e 666 (1060)
T PLN03218 591 NAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGH----AGDLD 666 (1060)
T ss_pred HCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----CCCHH
Confidence 9999999999999998875 56777778878877 99999999988765 55677777777776 78999
Q ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc---CCHHHHHHHHHHhhccCCHHHHHHHH
Q 019734 219 EAARWYLRAAEGG---YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC---GHGKAQLEHGLGLFTEGEMMKAVVYL 292 (336)
Q Consensus 219 ~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~~~~~~~A~~~~ 292 (336)
+|...++...+.+ +...+..|...|.+. ++.++|...|++.... -+...+..|...|.+.|++++|...|
T Consensus 667 eA~~l~~eM~k~G~~pd~~tynsLI~ay~k~----G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf 742 (1060)
T PLN03218 667 KAFEILQDARKQGIKLGTVSYSSLMGACSNA----KNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVL 742 (1060)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999988765 677888888888653 3899999999988664 34667788888899999999999999
Q ss_pred HHHHHcC-cHHHHHHHHHHHhhcChhcHHHHHHHHHHhhcC
Q 019734 293 ELATRAG-ETAADHVKNVILQQLSATSRDRAMLVVDSWRAM 332 (336)
Q Consensus 293 ~~A~~~~-~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 332 (336)
++..+.| .++...+...+......++.+.|+.+..++++.
T Consensus 743 ~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~ 783 (1060)
T PLN03218 743 SEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKED 783 (1060)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 9988765 455555555555666677788888888887653
No 63
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.20 E-value=1.6e-08 Score=94.74 Aligned_cols=257 Identities=18% Similarity=0.058 Sum_probs=173.3
Q ss_pred HHHHHHHhcCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc-CCHHHHHHHHH
Q 019734 67 DVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR-GSTLAMVDAGL 145 (336)
Q Consensus 67 ~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~-~~~~a~~~lg~ 145 (336)
-.+..+......|+...|..+....++..++ +-+.++.--.+-.. ...++.|..+|.+|-.. +....++.-+.
T Consensus 586 lwlM~ake~w~agdv~~ar~il~~af~~~pn--seeiwlaavKle~e----n~e~eraR~llakar~~sgTeRv~mKs~~ 659 (913)
T KOG0495|consen 586 LWLMYAKEKWKAGDVPAARVILDQAFEANPN--SEEIWLAAVKLEFE----NDELERARDLLAKARSISGTERVWMKSAN 659 (913)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC--cHHHHHHHHHHhhc----cccHHHHHHHHHHHhccCCcchhhHHHhH
Confidence 3466666667778888888888888888666 55555433333222 46788888888888665 67778888888
Q ss_pred HHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHH----HHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCH
Q 019734 146 MYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQ----EEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNL 217 (336)
Q Consensus 146 ~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~----~~A~~~~~ka~~~--~~~~a~~~lg~~~~~g~g~~~~~ 217 (336)
+....++.++|+.+++.+++. .....+..+|.++.+ +.|...|..-+.. +...-+..|+.+-+. .++.
T Consensus 660 ~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk----~~~~ 735 (913)
T KOG0495|consen 660 LERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEK----DGQL 735 (913)
T ss_pred HHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHH----hcch
Confidence 888888999999999888876 667888888998887 7777777666553 455666666666655 4566
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHcC-CCCcccHHHHHHHHHHHHH-------------------------------
Q 019734 218 QEAARWYLRAAEGGYVRAMYNTSLCYSFG-EGLPLSHRQARKWMKRAAD------------------------------- 265 (336)
Q Consensus 218 ~~A~~~~~~a~~~~~~~a~~~lg~~~~~~-~g~~~~~~~A~~~~~~a~~------------------------------- 265 (336)
.+|...+.++.-.+...+.+.|..+-... .| +.++|.....+|++
T Consensus 736 ~rAR~ildrarlkNPk~~~lwle~Ir~ElR~g---n~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkk 812 (913)
T KOG0495|consen 736 VRARSILDRARLKNPKNALLWLESIRMELRAG---NKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKK 812 (913)
T ss_pred hhHHHHHHHHHhcCCCcchhHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHh
Confidence 77777777664333333333333332221 22 55555555555554
Q ss_pred -cCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHcCcHHHHHHHHHHHhhcChhcHHHHHHHHHHhhcCCCCC
Q 019734 266 -CGHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWRAMPSLH 336 (336)
Q Consensus 266 -~~~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 336 (336)
.+++.....+|.+++...++++|..||++|+..++.....+.-+....+..+..++-+++++...+-.|.|
T Consensus 813 ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~h 884 (913)
T KOG0495|consen 813 CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTH 884 (913)
T ss_pred ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCC
Confidence 23444568889999999999999999999998765444433333334444455555667888888888876
No 64
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.20 E-value=3.5e-09 Score=91.50 Aligned_cols=193 Identities=8% Similarity=-0.037 Sum_probs=144.0
Q ss_pred ccccccCCCCCCCCCCCChHHHHHHHHhcCCChhHHhhhHHHHHHHHHhCCCC-CHHHHHHHHHHHhcCCCCcCCHHHHH
Q 019734 47 FSCSRSIKSTEGHDFASLPFDVLNKIAASFTLPQLRAASLVCKSWNDALRPLR-EAMVLLRWGKRFKHGRGVRKNLDKAL 125 (336)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~a~~~lg~~~~~g~g~~~~~~~A~ 125 (336)
..|+........+.....+...+..+...+..|++.+|...+...++..|+.. ...+++.+|.+|.. .+++++|+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~----~~~~~~A~ 90 (235)
T TIGR03302 15 AGCSSKKKKEADPVEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYK----SGDYAEAI 90 (235)
T ss_pred hhccCCcccccCCcccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHh----cCCHHHHH
Confidence 45666522211223344556678888889999999999999999988877632 24688999999999 68999999
Q ss_pred HHHHHHHHc--CCH---HHHHHHHHHHhcC--------CCHHHHHHHHHHHHHc--CCHHHH---HHHHHHHHHHHHHHH
Q 019734 126 DSFLKGAAR--GST---LAMVDAGLMYWEM--------DKKEAAISLYRQAAVL--GDPAGQ---FNLGISYLQEEAVKL 187 (336)
Q Consensus 126 ~~~~~A~~~--~~~---~a~~~lg~~~~~~--------~~~~~A~~~~~~a~~~--~~~~a~---~~Lg~~~~~~~A~~~ 187 (336)
..|+++++. +++ .+++.+|.++... |++++|+..|+++++. ++..+. ..++.+..
T Consensus 91 ~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~------- 163 (235)
T TIGR03302 91 AAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRN------- 163 (235)
T ss_pred HHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHH-------
Confidence 999999986 233 4799999999876 7899999999999865 444443 22222211
Q ss_pred HHHHHHcCCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHH
Q 019734 188 LYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG-----GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKR 262 (336)
Q Consensus 188 ~~ka~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~-----~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~ 262 (336)
......+.+|.+|.. .+++.+|+..|+++++. ..+.+++.+|.+|.... ++++|..+++.
T Consensus 164 -------~~~~~~~~~a~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg----~~~~A~~~~~~ 228 (235)
T TIGR03302 164 -------RLAGKELYVARFYLK----RGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLG----LKDLAQDAAAV 228 (235)
T ss_pred -------HHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcC----CHHHHHHHHHH
Confidence 112334678888887 79999999999999764 24689999999997633 99999998887
Q ss_pred HHH
Q 019734 263 AAD 265 (336)
Q Consensus 263 a~~ 265 (336)
...
T Consensus 229 l~~ 231 (235)
T TIGR03302 229 LGA 231 (235)
T ss_pred HHh
Confidence 654
No 65
>PLN02789 farnesyltranstransferase
Probab=99.17 E-value=3.7e-08 Score=88.51 Aligned_cols=212 Identities=10% Similarity=-0.109 Sum_probs=168.1
Q ss_pred CCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHc--CCHHHHHHHHHHHHH------HHHHHH
Q 019734 119 KNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMD-KKEAAISLYRQAAVL--GDPAGQFNLGISYLQ------EEAVKL 187 (336)
Q Consensus 119 ~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~-~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~------~~A~~~ 187 (336)
+..++|+..+.+++.. .+..++...|.++...+ ++++++.++.++++. ++..++++.+.++.. ++++.+
T Consensus 51 e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~ 130 (320)
T PLN02789 51 ERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEF 130 (320)
T ss_pred CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHH
Confidence 5788999999999987 57889999999999988 689999999999865 788999999988875 567899
Q ss_pred HHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcC---CCCcccHHHHHHHH
Q 019734 188 LYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAE--GGYVRAMYNTSLCYSFG---EGLPLSHRQARKWM 260 (336)
Q Consensus 188 ~~ka~~~--~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~~---~g~~~~~~~A~~~~ 260 (336)
+.++++. .+..|+.+.|.++.. .+++++++.++.++++ ..+..++++.+.++... .+.....++++.+.
T Consensus 131 ~~kal~~dpkNy~AW~~R~w~l~~----l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~ 206 (320)
T PLN02789 131 TRKILSLDAKNYHAWSHRQWVLRT----LGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYT 206 (320)
T ss_pred HHHHHHhCcccHHHHHHHHHHHHH----hhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHHH
Confidence 9999876 588999999999998 7889999999999976 57899999999988654 23334467899999
Q ss_pred HHHHHc--CCHHHHHHHHHHhhc----cCCHHHHHHHHHHHHHcC--cHHHHHHHHHHHhhcC-hh--------------
Q 019734 261 KRAADC--GHGKAQLEHGLGLFT----EGEMMKAVVYLELATRAG--ETAADHVKNVILQQLS-AT-------------- 317 (336)
Q Consensus 261 ~~a~~~--~~~~a~~~lg~~~~~----~~~~~~A~~~~~~A~~~~--~~~a~~~~~~~~~~~~-~~-------------- 317 (336)
.+++.. .+..+++.++.++.. .++..+|...+..++..+ ...|...+..++.... +.
T Consensus 207 ~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~ 286 (320)
T PLN02789 207 IDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEEL 286 (320)
T ss_pred HHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhcccccc
Confidence 999874 678889999998887 345677999999987754 4566666665554421 11
Q ss_pred -cHHHHHHHHHHhhcCCC
Q 019734 318 -SRDRAMLVVDSWRAMPS 334 (336)
Q Consensus 318 -~~~~a~~~~~~~~~~~~ 334 (336)
..++|..+++.+.+--|
T Consensus 287 ~~~~~a~~~~~~l~~~d~ 304 (320)
T PLN02789 287 SDSTLAQAVCSELEVADP 304 (320)
T ss_pred ccHHHHHHHHHHHHhhCc
Confidence 34678777777744333
No 66
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.15 E-value=2.1e-09 Score=90.21 Aligned_cols=117 Identities=13% Similarity=0.076 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCcccHHHHH
Q 019734 182 EEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAE--GGYVRAMYNTSLCYSFGEGLPLSHRQAR 257 (336)
Q Consensus 182 ~~A~~~~~ka~~~--~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~~~g~~~~~~~A~ 257 (336)
++++..+++++.. +++++++.||.+|.. .+++++|+..|++++. ++++..+..+|.++....| ....++|.
T Consensus 56 ~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~----~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g-~~~~~~A~ 130 (198)
T PRK10370 56 EAQLQALQDKIRANPQNSEQWALLGEYYLW----RNDYDNALLAYRQALQLRGENAELYAALATVLYYQAG-QHMTPQTR 130 (198)
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC-CCCcHHHH
Confidence 5566666666654 578888888888877 7999999999999965 5789999999997532222 11469999
Q ss_pred HHHHHHHHc--CCHHHHHHHHHHhhccCCHHHHHHHHHHHHHcCcHHH
Q 019734 258 KWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAA 303 (336)
Q Consensus 258 ~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~~~~a 303 (336)
..+++++.. +++.++++||..+++.|++++|+.+|+++++..+++.
T Consensus 131 ~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~ 178 (198)
T PRK10370 131 EMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRV 178 (198)
T ss_pred HHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 999999985 6789999999999999999999999999999876643
No 67
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.14 E-value=2.6e-08 Score=93.33 Aligned_cols=218 Identities=9% Similarity=-0.048 Sum_probs=145.4
Q ss_pred HHHHHHhcCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHH
Q 019734 68 VLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGL 145 (336)
Q Consensus 68 ~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~ 145 (336)
.+..+......|+++.|...+....+..++.+ ..+...++.++.. .+++++|...+++..+. +++.++..++.
T Consensus 121 ~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~-l~~~~~~a~l~l~----~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~ 195 (409)
T TIGR00540 121 LIKAAEAAQQRGDEARANQHLEEAAELAGNDN-ILVEIARTRILLA----QNELHAARHGVDKLLEMAPRHKEVLKLAEE 195 (409)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCc-hHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 34445555666777777666666655544421 1233334666666 46777777777777665 46777777777
Q ss_pred HHhcCCCHHHHHHHHHHHHHc--------------------------------------------CCHHHHHHHHHHHHH
Q 019734 146 MYWEMDKKEAAISLYRQAAVL--------------------------------------------GDPAGQFNLGISYLQ 181 (336)
Q Consensus 146 ~~~~~~~~~~A~~~~~~a~~~--------------------------------------------~~~~a~~~Lg~~~~~ 181 (336)
++...||+++|++.+.+..+. +++...+.++..+..
T Consensus 196 ~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~ 275 (409)
T TIGR00540 196 AYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLID 275 (409)
T ss_pred HHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHH
Confidence 777777777777766655533 133344444444444
Q ss_pred ----HHHHHHHHHHHHc--CCHHHH--HHHHHHHhcCCCCccCHHHHHHHHHHHHH--CCCH--HHHHHHHHHHHcCCCC
Q 019734 182 ----EEAVKLLYQASIA--GHVRAQ--YQLALCLHRGRGVDFNLQEAARWYLRAAE--GGYV--RAMYNTSLCYSFGEGL 249 (336)
Q Consensus 182 ----~~A~~~~~ka~~~--~~~~a~--~~lg~~~~~g~g~~~~~~~A~~~~~~a~~--~~~~--~a~~~lg~~~~~~~g~ 249 (336)
++|+..++++++. ++.... ......... .+|...+...++++.. ++++ .....+|.++..
T Consensus 276 ~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~----~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~---- 347 (409)
T TIGR00540 276 CDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLK----PEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMK---- 347 (409)
T ss_pred CCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcC----CCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHH----
Confidence 9999999999875 233211 111111122 4778899999998865 4778 777899999976
Q ss_pred cccHHHHHHHHHH--HHHc-CCHHHHHHHHHHhhccCCHHHHHHHHHHHHHc
Q 019734 250 PLSHRQARKWMKR--AADC-GHGKAQLEHGLGLFTEGEMMKAVVYLELATRA 298 (336)
Q Consensus 250 ~~~~~~A~~~~~~--a~~~-~~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~ 298 (336)
.+++++|.++|++ +.+. .++..+..||.++...|+.++|.++|++++..
T Consensus 348 ~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 348 HGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred cccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3399999999995 5553 34555779999999999999999999998753
No 68
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.14 E-value=3.7e-09 Score=84.07 Aligned_cols=114 Identities=12% Similarity=0.058 Sum_probs=75.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHH----HHHHHHHHHHHHc--CC
Q 019734 125 LDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQ----EEAVKLLYQASIA--GH 196 (336)
Q Consensus 125 ~~~~~~A~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~----~~A~~~~~ka~~~--~~ 196 (336)
..+|+++++.+ |..++.+|.++...|++++|+.+|++++.. .++.+++++|.++.. ++|+.+|+++++. ++
T Consensus 13 ~~~~~~al~~~-p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~ 91 (144)
T PRK15359 13 EDILKQLLSVD-PETVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASH 91 (144)
T ss_pred HHHHHHHHHcC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence 45577777654 334667778887788888888888877654 567777777777665 6666666666553 46
Q ss_pred HHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHH--CCCHHHHHHHHHHH
Q 019734 197 VRAQYQLALCLHRGRGVDFNLQEAARWYLRAAE--GGYVRAMYNTSLCY 243 (336)
Q Consensus 197 ~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~ 243 (336)
+.+++++|.++.. .+++++|+..|++++. ++++..+.+.|.+.
T Consensus 92 ~~a~~~lg~~l~~----~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~ 136 (144)
T PRK15359 92 PEPVYQTGVCLKM----MGEPGLAREAFQTAIKMSYADASWSEIRQNAQ 136 (144)
T ss_pred cHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 6666667766666 5677777777777654 35555555555544
No 69
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.13 E-value=3.8e-09 Score=84.02 Aligned_cols=105 Identities=13% Similarity=0.045 Sum_probs=87.7
Q ss_pred CHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHH
Q 019734 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNL 175 (336)
Q Consensus 100 ~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~L 175 (336)
++..++.+|.++.. .+++++|+.+|++++.. .+..+++.+|.++...|++++|+.+|.+++.. +++.+++++
T Consensus 23 ~p~~~~~~g~~~~~----~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~l 98 (144)
T PRK15359 23 DPETVYASGYASWQ----EGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQT 98 (144)
T ss_pred CHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHH
Confidence 34446667888877 68999999999999887 57889999999999999999999999998865 789999999
Q ss_pred HHHHHH----HHHHHHHHHHHHc--CCHHHHHHHHHHHh
Q 019734 176 GISYLQ----EEAVKLLYQASIA--GHVRAQYQLALCLH 208 (336)
Q Consensus 176 g~~~~~----~~A~~~~~ka~~~--~~~~a~~~lg~~~~ 208 (336)
|.++.. ++|+..|+++++. +++..+.+.|.+..
T Consensus 99 g~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 99 GVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 999988 9999999999775 67888888877654
No 70
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.12 E-value=2.1e-07 Score=86.83 Aligned_cols=220 Identities=9% Similarity=-0.080 Sum_probs=148.8
Q ss_pred HHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc-CCHHHHHHH-HHHHhcCCCHHHHHHHHHHHHHc--CCHHHH-HHH
Q 019734 101 AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR-GSTLAMVDA-GLMYWEMDKKEAAISLYRQAAVL--GDPAGQ-FNL 175 (336)
Q Consensus 101 ~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~-~~~~a~~~l-g~~~~~~~~~~~A~~~~~~a~~~--~~~~a~-~~L 175 (336)
+...+.-|.+... +||+++|.+...++.+. +++...+.+ +......|+++.|..+|.++.+. ++..+. ...
T Consensus 84 ~~~~~~~gl~a~~----eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~ 159 (398)
T PRK10747 84 ARKQTEQALLKLA----EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITR 159 (398)
T ss_pred HHHHHHHHHHHHh----CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHH
Confidence 3445566777666 58999999999998876 356655655 45548899999999999999875 232233 334
Q ss_pred HHHHHH----HHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHCCC--H--------HHHHHH
Q 019734 176 GISYLQ----EEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGY--V--------RAMYNT 239 (336)
Q Consensus 176 g~~~~~----~~A~~~~~ka~~~--~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~~~--~--------~a~~~l 239 (336)
+.++.. ++|+..+++..+. +++.+...++.+|.. .+|+++|+..+.+...... + .++..+
T Consensus 160 a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~----~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l 235 (398)
T PRK10747 160 VRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIR----TGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGL 235 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----HHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 777776 9999999999775 689999999999998 7999999988887754321 1 122222
Q ss_pred HHHHHcCCCCcccHHHHHHHHHHHHH--cCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHcCcHHHHHHHHHHHhhcChh
Q 019734 240 SLCYSFGEGLPLSHRQARKWMKRAAD--CGHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNVILQQLSAT 317 (336)
Q Consensus 240 g~~~~~~~g~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~~~~a~~~~~~~~~~~~~~ 317 (336)
...... ..+.+....+++.... .+++.....++..+...|+.++|...++++++... +. .+..++..+..+
T Consensus 236 ~~~~~~----~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~-~~--~l~~l~~~l~~~ 308 (398)
T PRK10747 236 MDQAMA----DQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQY-DE--RLVLLIPRLKTN 308 (398)
T ss_pred HHHHHH----hcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CH--HHHHHHhhccCC
Confidence 111111 1234444444444322 35677778888888888888888888888877432 11 222233334446
Q ss_pred cHHHHHHHHHHhhcCCCC
Q 019734 318 SRDRAMLVVDSWRAMPSL 335 (336)
Q Consensus 318 ~~~~a~~~~~~~~~~~~~ 335 (336)
+.+++...+++|.+.+|.
T Consensus 309 ~~~~al~~~e~~lk~~P~ 326 (398)
T PRK10747 309 NPEQLEKVLRQQIKQHGD 326 (398)
T ss_pred ChHHHHHHHHHHHhhCCC
Confidence 677777888888877775
No 71
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=1.3e-07 Score=86.97 Aligned_cols=259 Identities=14% Similarity=0.061 Sum_probs=168.1
Q ss_pred HHHHHHHhcCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHH
Q 019734 67 DVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAG 144 (336)
Q Consensus 67 ~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg 144 (336)
+...+....|..|+++.|+..+-..+...|. +..-+-+-.-+|.. .+++++|+.--.+.+++ .++.++..+|
T Consensus 4 e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~--nhvlySnrsaa~a~----~~~~~~al~da~k~~~l~p~w~kgy~r~G 77 (539)
T KOG0548|consen 4 ELKEKGNAAFSSGDFETAIRLFTEAIMLSPT--NHVLYSNRSAAYAS----LGSYEKALKDATKTRRLNPDWAKGYSRKG 77 (539)
T ss_pred HHHHHHHhhcccccHHHHHHHHHHHHccCCC--ccchhcchHHHHHH----HhhHHHHHHHHHHHHhcCCchhhHHHHhH
Confidence 3456777788888888888777777776665 33333334444444 46788888888887776 4788888888
Q ss_pred HHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHH-----------------------------------------
Q 019734 145 LMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQ----------------------------------------- 181 (336)
Q Consensus 145 ~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~----------------------------------------- 181 (336)
..+.-.|++++|+..|.+.++. .+...+..|..++..
T Consensus 78 aa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~ 157 (539)
T KOG0548|consen 78 AALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQK 157 (539)
T ss_pred HHHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhc
Confidence 8888888888888888887754 333333333333211
Q ss_pred --------------------------------------------------------------------------------
Q 019734 182 -------------------------------------------------------------------------------- 181 (336)
Q Consensus 182 -------------------------------------------------------------------------------- 181 (336)
T Consensus 158 ~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykk 237 (539)
T KOG0548|consen 158 NPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKK 237 (539)
T ss_pred CcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHh
Confidence
Q ss_pred ---HHHHHHHHHHHHcC-CH---------------------------------HHH-HHHHHHHhc-C--CCCccCHHHH
Q 019734 182 ---EEAVKLLYQASIAG-HV---------------------------------RAQ-YQLALCLHR-G--RGVDFNLQEA 220 (336)
Q Consensus 182 ---~~A~~~~~ka~~~~-~~---------------------------------~a~-~~lg~~~~~-g--~g~~~~~~~A 220 (336)
..|++.|.++++.. +. .+. ..|+.++.. | .+..++++.+
T Consensus 238 k~f~~a~q~y~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~a 317 (539)
T KOG0548|consen 238 KDFETAIQHYAKALELATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGA 317 (539)
T ss_pred hhHHHHHHHHHHHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHH
Confidence 66777777765432 10 111 112222221 0 1125788888
Q ss_pred HHHHHHHHHCC-C---------------------------HHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHH
Q 019734 221 ARWYLRAAEGG-Y---------------------------VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGK 270 (336)
Q Consensus 221 ~~~~~~a~~~~-~---------------------------~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~--~~~~ 270 (336)
+.+|++++... . ......-|..++. .+|+.+|+.+|.+|+.. .++.
T Consensus 318 i~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk----~gdy~~Av~~YteAIkr~P~Da~ 393 (539)
T KOG0548|consen 318 IKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFK----KGDYPEAVKHYTEAIKRDPEDAR 393 (539)
T ss_pred HHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHh----ccCHHHHHHHHHHHHhcCCchhH
Confidence 88888876421 0 1112233555543 44899999999999886 4566
Q ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHcCcHHHHHHHHHHHhhcChhcHHHHHHHHHHhhcCCCC
Q 019734 271 AQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWRAMPSL 335 (336)
Q Consensus 271 a~~~lg~~~~~~~~~~~A~~~~~~A~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 335 (336)
.+-|.+.+|...+++..|+...+++++..++....++..........+.++|++.+.+-++..|+
T Consensus 394 lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~ 458 (539)
T KOG0548|consen 394 LYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPS 458 (539)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch
Confidence 67888999999999999999989988887766655555555555566677788887777766653
No 72
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.10 E-value=3.3e-08 Score=90.70 Aligned_cols=187 Identities=13% Similarity=0.003 Sum_probs=138.5
Q ss_pred CCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHH
Q 019734 99 REAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR-----GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAG 171 (336)
Q Consensus 99 ~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~-----~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a 171 (336)
..+.+++.+|.++... ++.+.|...+.++... +..+..+..+.++...|++++|+..++++++. ++..+
T Consensus 4 ~~~~a~~~~a~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a 79 (355)
T cd05804 4 DFALGHAAAALLLLLG----GERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLA 79 (355)
T ss_pred ccHHHHHHHHHHHHhc----CCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHH
Confidence 4789999999888773 6777777777777654 24566777888999999999999999998865 56666
Q ss_pred HHHHHHHHHH--------HHHHHHHHHHHH--cCCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHC--CCHHHHHHH
Q 019734 172 QFNLGISYLQ--------EEAVKLLYQASI--AGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNT 239 (336)
Q Consensus 172 ~~~Lg~~~~~--------~~A~~~~~ka~~--~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~l 239 (336)
+.. +..+.. ..+...+..... .+...+...+|.++.. .+++++|+..++++++. .+..++..+
T Consensus 80 ~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~----~G~~~~A~~~~~~al~~~p~~~~~~~~l 154 (355)
T cd05804 80 LKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEE----AGQYDRAEEAARRALELNPDDAWAVHAV 154 (355)
T ss_pred HHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCcHHHHHH
Confidence 553 333332 333333333211 1345566788888887 78999999999999764 677888999
Q ss_pred HHHHHcCCCCcccHHHHHHHHHHHHHcCC--H----HHHHHHHHHhhccCCHHHHHHHHHHHHHc
Q 019734 240 SLCYSFGEGLPLSHRQARKWMKRAADCGH--G----KAQLEHGLGLFTEGEMMKAVVYLELATRA 298 (336)
Q Consensus 240 g~~~~~~~g~~~~~~~A~~~~~~a~~~~~--~----~a~~~lg~~~~~~~~~~~A~~~~~~A~~~ 298 (336)
|.+|.. .| ++++|+.++++++.... + ..+..++.++...|++++|..+|++++..
T Consensus 155 a~i~~~-~g---~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~ 215 (355)
T cd05804 155 AHVLEM-QG---RFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAP 215 (355)
T ss_pred HHHHHH-cC---CHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 999865 33 99999999999987532 2 23457899999999999999999998754
No 73
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.09 E-value=4.8e-09 Score=87.99 Aligned_cols=109 Identities=16% Similarity=0.116 Sum_probs=78.7
Q ss_pred cCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHH-H------HHHHH
Q 019734 118 RKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYL-Q------EEAVK 186 (336)
Q Consensus 118 ~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~-~------~~A~~ 186 (336)
.++.++++..+++++.. +++++|+.||.+|...|++++|+..|++++.. +++..+..+|.++. . ++|..
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~ 131 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE 131 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 46778888888888876 58889999999998899999999998888754 67777777777642 2 56666
Q ss_pred HHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHC
Q 019734 187 LLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG 230 (336)
Q Consensus 187 ~~~ka~~~--~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~ 230 (336)
.|+++++. +++.+++++|.++.. .+++++|+.+|+++++.
T Consensus 132 ~l~~al~~dP~~~~al~~LA~~~~~----~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 132 MIDKALALDANEVTALMLLASDAFM----QADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHhCCCChhHHHHHHHHHHH----cCCHHHHHHHHHHHHhh
Confidence 66666554 356666666666665 56666666666666543
No 74
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.08 E-value=1.3e-07 Score=94.60 Aligned_cols=244 Identities=12% Similarity=-0.069 Sum_probs=167.0
Q ss_pred hcCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHhcC
Q 019734 74 ASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG---STLAMVDAGLMYWEM 150 (336)
Q Consensus 74 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~lg~~~~~~ 150 (336)
.+...|++.+|..++.......+...+...+..+-..+.. .++++.|...+......| +...+..|..+|...
T Consensus 96 ~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~----~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~ 171 (697)
T PLN03081 96 KLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIA----LKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKC 171 (697)
T ss_pred HHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcC
Confidence 3446788999988877665443333456666666666655 478888888888887764 567788888899999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----HHHHHHHHHHHHcCC---HH-------------------------
Q 019734 151 DKKEAAISLYRQAAVLGDPAGQFNLGISYLQ----EEAVKLLYQASIAGH---VR------------------------- 198 (336)
Q Consensus 151 ~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~----~~A~~~~~ka~~~~~---~~------------------------- 198 (336)
|++++|...|.+..+. +...+..+-..|.. ++|+..|++..+.+. ..
T Consensus 172 g~~~~A~~lf~~m~~~-~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~ 250 (697)
T PLN03081 172 GMLIDARRLFDEMPER-NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCV 250 (697)
T ss_pred CCHHHHHHHHhcCCCC-CeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 9999999999887553 55667777777766 888888888765431 11
Q ss_pred ----------HHHHHHHHHhcCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcC-
Q 019734 199 ----------AQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCG- 267 (336)
Q Consensus 199 ----------a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~~- 267 (336)
++..|-.+|.. .++.++|...|+... ..+..++..+...|.+. ++.++|+..|++....|
T Consensus 251 ~~~g~~~d~~~~n~Li~~y~k----~g~~~~A~~vf~~m~-~~~~vt~n~li~~y~~~----g~~~eA~~lf~~M~~~g~ 321 (697)
T PLN03081 251 LKTGVVGDTFVSCALIDMYSK----CGDIEDARCVFDGMP-EKTTVAWNSMLAGYALH----GYSEEALCLYYEMRDSGV 321 (697)
T ss_pred HHhCCCccceeHHHHHHHHHH----CCCHHHHHHHHHhCC-CCChhHHHHHHHHHHhC----CCHHHHHHHHHHHHHcCC
Confidence 22333444444 577777877777653 34667777777777543 27888888887776543
Q ss_pred --CHHHHHHHHHHhhccCCHHHHHHHHHHHHHcC-cHHHHHHHHHHHhhcChhcHHHHHHHHHHhhc
Q 019734 268 --HGKAQLEHGLGLFTEGEMMKAVVYLELATRAG-ETAADHVKNVILQQLSATSRDRAMLVVDSWRA 331 (336)
Q Consensus 268 --~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~-~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 331 (336)
+...+..+...+.+.|++++|...+...++.| .++.......+..+...++.++|..+++++.+
T Consensus 322 ~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~ 388 (697)
T PLN03081 322 SIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR 388 (697)
T ss_pred CCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC
Confidence 45566677777777888888888888887776 33444444445555556777888888877654
No 75
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.07 E-value=3e-08 Score=99.25 Aligned_cols=201 Identities=11% Similarity=-0.003 Sum_probs=119.0
Q ss_pred CCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHhcCCC
Q 019734 76 FTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG---STLAMVDAGLMYWEMDK 152 (336)
Q Consensus 76 ~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~lg~~~~~~~~ 152 (336)
...|++++|..++... +. .+...+..|...|.. .++.++|+..|++....| +...+..+...+...|+
T Consensus 270 ~k~g~~~~A~~vf~~m----~~-~~~vt~n~li~~y~~----~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~ 340 (697)
T PLN03081 270 SKCGDIEDARCVFDGM----PE-KTTVAWNSMLAGYAL----HGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLAL 340 (697)
T ss_pred HHCCCHHHHHHHHHhC----CC-CChhHHHHHHHHHHh----CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccc
Confidence 3567788775444332 22 366677777777777 478888888887776553 55666777777777777
Q ss_pred HHHHHHHHHHHHHcC---CHHHHHHHHHHHHH----HHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCccCHHHHHHHHH
Q 019734 153 KEAAISLYRQAAVLG---DPAGQFNLGISYLQ----EEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYL 225 (336)
Q Consensus 153 ~~~A~~~~~~a~~~~---~~~a~~~Lg~~~~~----~~A~~~~~ka~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~ 225 (336)
+++|...+...++.| +...+..|...|.. ++|...|++..+ .+..+|..|...|.. .++.++|+..|+
T Consensus 341 ~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~-~d~~t~n~lI~~y~~----~G~~~~A~~lf~ 415 (697)
T PLN03081 341 LEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR-KNLISWNALIAGYGN----HGRGTKAVEMFE 415 (697)
T ss_pred hHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC-CCeeeHHHHHHHHHH----cCCHHHHHHHHH
Confidence 777777777776654 34455566666655 666666665543 244456666666655 566666666666
Q ss_pred HHHHCC---CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc-C---CHHHHHHHHHHhhccCCHHHHHHHHHH
Q 019734 226 RAAEGG---YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC-G---HGKAQLEHGLGLFTEGEMMKAVVYLEL 294 (336)
Q Consensus 226 ~a~~~~---~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~~~~~~~A~~~~~~ 294 (336)
+..+.| +...+..+-..+.+ .++.++|..+|+...+. + +...+..+..+|.+.|++++|...+++
T Consensus 416 ~M~~~g~~Pd~~T~~~ll~a~~~----~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~ 487 (697)
T PLN03081 416 RMIAEGVAPNHVTFLAVLSACRY----SGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRR 487 (697)
T ss_pred HHHHhCCCCCHHHHHHHHHHHhc----CCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHH
Confidence 665443 33444444444432 22566666666665542 1 123344555555556666666555554
No 76
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.03 E-value=2.9e-07 Score=80.50 Aligned_cols=256 Identities=11% Similarity=0.003 Sum_probs=183.1
Q ss_pred HHHHHHHhcCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHH
Q 019734 67 DVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAG 144 (336)
Q Consensus 67 ~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg 144 (336)
.-+......+..|++..|...|-...+-.|+ +-.+.|..|..|.. .|.-.-|+.-+.+.+++ +...|..+.|
T Consensus 40 khlElGk~lla~~Q~sDALt~yHaAve~dp~--~Y~aifrRaT~yLA----mGksk~al~Dl~rVlelKpDF~~ARiQRg 113 (504)
T KOG0624|consen 40 KHLELGKELLARGQLSDALTHYHAAVEGDPN--NYQAIFRRATVYLA----MGKSKAALQDLSRVLELKPDFMAARIQRG 113 (504)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHcCCch--hHHHHHHHHHHHhh----hcCCccchhhHHHHHhcCccHHHHHHHhc
Confidence 3477777888999999999999888888777 88899999999988 46777788888988887 5678889999
Q ss_pred HHHhcCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHH----------------HHHHHHHHHHHHcC--CHHHHH
Q 019734 145 LMYWEMDKKEAAISLYRQAAVLG-----DPAGQFNLGISYLQ----------------EEAVKLLYQASIAG--HVRAQY 201 (336)
Q Consensus 145 ~~~~~~~~~~~A~~~~~~a~~~~-----~~~a~~~Lg~~~~~----------------~~A~~~~~ka~~~~--~~~a~~ 201 (336)
.++...|.+++|+.-|++.++.+ .-+++-.|+.+-.. ..++++..+.++.. ++.-+-
T Consensus 114 ~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~ 193 (504)
T KOG0624|consen 114 VVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQ 193 (504)
T ss_pred hhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHH
Confidence 99999999999999999998653 24555555544433 45555555555542 444455
Q ss_pred HHHHHHhcCCCCccCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc-------------
Q 019734 202 QLALCLHRGRGVDFNLQEAARWYLRAAE--GGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC------------- 266 (336)
Q Consensus 202 ~lg~~~~~g~g~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~------------- 266 (336)
.-+.||.. .++..+|+.-++.+.. .++++++|.++.++..- | +.+.++.-.+..++.
T Consensus 194 ~Rakc~i~----~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~v-g---d~~~sL~~iRECLKldpdHK~Cf~~YKk 265 (504)
T KOG0624|consen 194 ARAKCYIA----EGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTV-G---DAENSLKEIRECLKLDPDHKLCFPFYKK 265 (504)
T ss_pred HHHHHHHh----cCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhh-h---hHHHHHHHHHHHHccCcchhhHHHHHHH
Confidence 56677776 6777777777777643 46677777666665421 1 333333333322221
Q ss_pred -----------------CCHHH----------------------HHHHHHHhhccCCHHHHHHHHHHHHHcCcHHHHHHH
Q 019734 267 -----------------GHGKA----------------------QLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVK 307 (336)
Q Consensus 267 -----------------~~~~a----------------------~~~lg~~~~~~~~~~~A~~~~~~A~~~~~~~a~~~~ 307 (336)
++... ..-+..|+.+.+++.+|+....++++..+.++..+-
T Consensus 266 lkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~ 345 (504)
T KOG0624|consen 266 LKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLC 345 (504)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHH
Confidence 11111 123455677788999999999999999999998888
Q ss_pred HHHHhhcChhcHHHHHHHHHHhhcCCCCC
Q 019734 308 NVILQQLSATSRDRAMLVVDSWRAMPSLH 336 (336)
Q Consensus 308 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 336 (336)
.....++..+..|.|++-.......+++|
T Consensus 346 dRAeA~l~dE~YD~AI~dye~A~e~n~sn 374 (504)
T KOG0624|consen 346 DRAEAYLGDEMYDDAIHDYEKALELNESN 374 (504)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhcCccc
Confidence 88888898888999998888777777654
No 77
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.02 E-value=2.2e-09 Score=95.50 Aligned_cols=177 Identities=21% Similarity=0.260 Sum_probs=86.5
Q ss_pred hhHHhhhHHHHHHHHHhCCCC----CHHHHHHHHHHHhc-CC--CC-------------cCCHHHHHHHHHHHHHc----
Q 019734 79 PQLRAASLVCKSWNDALRPLR----EAMVLLRWGKRFKH-GR--GV-------------RKNLDKALDSFLKGAAR---- 134 (336)
Q Consensus 79 ~~~~~a~~~~~~~~~~~~~~~----~~~a~~~lg~~~~~-g~--g~-------------~~~~~~A~~~~~~A~~~---- 134 (336)
|.+++|+..+.+.+..+.+.| .+.|+|+||.+|.. |. |+ ..+++.|+++|..-+++
T Consensus 109 G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~l 188 (639)
T KOG1130|consen 109 GAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKL 188 (639)
T ss_pred cccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 556666666666655544332 45567777777655 11 11 11244555555544332
Q ss_pred CC----HHHHHHHHHHHhcCCCHHHHHHHHHHHH----HcCC----HHHHHHHHHHHHH----HHHHHHHHHHH----Hc
Q 019734 135 GS----TLAMVDAGLMYWEMDKKEAAISLYRQAA----VLGD----PAGQFNLGISYLQ----EEAVKLLYQAS----IA 194 (336)
Q Consensus 135 ~~----~~a~~~lg~~~~~~~~~~~A~~~~~~a~----~~~~----~~a~~~Lg~~~~~----~~A~~~~~ka~----~~ 194 (336)
++ ..++-+||..|+-.||++.||.+-+.=+ +-|+ -.|+.+||+++.- +.|+++|++++ +.
T Consensus 189 gDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAiel 268 (639)
T KOG1130|consen 189 GDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIEL 268 (639)
T ss_pred hhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHh
Confidence 22 2344566666666677777766644322 2233 2344555555544 55555555442 22
Q ss_pred CC----HHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHH--------CCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHH
Q 019734 195 GH----VRAQYQLALCLHRGRGVDFNLQEAARWYLRAAE--------GGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKR 262 (336)
Q Consensus 195 ~~----~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~--------~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~ 262 (336)
++ +...|-||..|.- .+++.+||.|+++-+. .|...+++.||..|.... ..++|+.+.++
T Consensus 269 g~r~vEAQscYSLgNtytl----l~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg----~h~kAl~fae~ 340 (639)
T KOG1130|consen 269 GNRTVEAQSCYSLGNTYTL----LKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALG----EHRKALYFAEL 340 (639)
T ss_pred cchhHHHHHHHHhhhHHHH----HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhh----hHHHHHHHHHH
Confidence 21 2334555555544 3455555555554211 134455555555553322 44444444444
Q ss_pred H
Q 019734 263 A 263 (336)
Q Consensus 263 a 263 (336)
.
T Consensus 341 h 341 (639)
T KOG1130|consen 341 H 341 (639)
T ss_pred H
Confidence 3
No 78
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.01 E-value=1.5e-07 Score=89.89 Aligned_cols=205 Identities=18% Similarity=0.090 Sum_probs=137.5
Q ss_pred hhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHhcCCCHHHHHHH
Q 019734 83 AASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR---GSTLAMVDAGLMYWEMDKKEAAISL 159 (336)
Q Consensus 83 ~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~---~~~~a~~~lg~~~~~~~~~~~A~~~ 159 (336)
+++..+.+..+..+. |+.+.|.|+.-|.. .++++.|..+.+++++. .++.+|..|+.++...+++.+|+..
T Consensus 462 kslqale~av~~d~~--dp~~if~lalq~A~----~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~v 535 (799)
T KOG4162|consen 462 KSLQALEEAVQFDPT--DPLVIFYLALQYAE----QRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDV 535 (799)
T ss_pred HHHHHHHHHHhcCCC--CchHHHHHHHHHHH----HHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHH
Confidence 455445555555555 78999999999988 68999999999999987 3789999999999999999999998
Q ss_pred HHHHHHc-CC-----------------HHHHHH-----HHHHH-------------------------------------
Q 019734 160 YRQAAVL-GD-----------------PAGQFN-----LGISY------------------------------------- 179 (336)
Q Consensus 160 ~~~a~~~-~~-----------------~~a~~~-----Lg~~~------------------------------------- 179 (336)
..-+++. ++ ++.... |+..-
T Consensus 536 vd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ 615 (799)
T KOG4162|consen 536 VDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRY 615 (799)
T ss_pred HHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHH
Confidence 8887643 22 111100 00000
Q ss_pred ---------------------------------------------HH----HHHHHHHHHHHHc--CCHHHHHHHHHHHh
Q 019734 180 ---------------------------------------------LQ----EEAVKLLYQASIA--GHVRAQYQLALCLH 208 (336)
Q Consensus 180 ---------------------------------------------~~----~~A~~~~~ka~~~--~~~~a~~~lg~~~~ 208 (336)
.. ++|..|+..|... -.+..++..|.++.
T Consensus 616 ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~ 695 (799)
T KOG4162|consen 616 LSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLE 695 (799)
T ss_pred HHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHH
Confidence 00 3333344433322 23344566666666
Q ss_pred cCCCCccCHHHHHHHHHHH--HHCCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhccCC
Q 019734 209 RGRGVDFNLQEAARWYLRA--AEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGE 284 (336)
Q Consensus 209 ~g~g~~~~~~~A~~~~~~a--~~~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~ 284 (336)
. .+...+|.+.|..| ++++++.++..+|.++..+. .+...+...++..++.. .++++++.||.++...|+
T Consensus 696 ~----~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G--~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd 769 (799)
T KOG4162|consen 696 V----KGQLEEAKEAFLVALALDPDHVPSMTALAELLLELG--SPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGD 769 (799)
T ss_pred H----HHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC--CcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccc
Confidence 5 67777777777776 45677777777777776543 34455555577777764 457777777777777777
Q ss_pred HHHHHHHHHHHHHcC
Q 019734 285 MMKAVVYLELATRAG 299 (336)
Q Consensus 285 ~~~A~~~~~~A~~~~ 299 (336)
.++|..+|.-|+...
T Consensus 770 ~~~Aaecf~aa~qLe 784 (799)
T KOG4162|consen 770 SKQAAECFQAALQLE 784 (799)
T ss_pred hHHHHHHHHHHHhhc
Confidence 777777777777653
No 79
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.99 E-value=6.9e-08 Score=95.03 Aligned_cols=123 Identities=13% Similarity=-0.044 Sum_probs=113.7
Q ss_pred CHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHH
Q 019734 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNL 175 (336)
Q Consensus 100 ~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~L 175 (336)
++++++.||.+... .+.+++|..+++.+++. ++..+..+++.++.+.+.+++|+.++++++.. +++.+++.+
T Consensus 85 ~~~~~~~La~i~~~----~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~ 160 (694)
T PRK15179 85 TELFQVLVARALEA----AHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLE 160 (694)
T ss_pred cHHHHHHHHHHHHH----cCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHH
Confidence 69999999999998 68999999999999987 68999999999999999999999999999855 899999999
Q ss_pred HHHHHH----HHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHC
Q 019734 176 GISYLQ----EEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG 230 (336)
Q Consensus 176 g~~~~~----~~A~~~~~ka~~~--~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~ 230 (336)
|.++.. ++|+.+|++++.. +++.++..+|.++.. .|+.++|...|++|++.
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~----~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTR----RGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHh
Confidence 999998 9999999999975 468999999999998 89999999999999765
No 80
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.96 E-value=2.2e-08 Score=95.01 Aligned_cols=212 Identities=17% Similarity=0.022 Sum_probs=165.5
Q ss_pred CHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHH-cCCHHHHHHHHHH
Q 019734 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAV-LGDPAGQFNLGIS 178 (336)
Q Consensus 100 ~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~-~~~~~a~~~Lg~~ 178 (336)
.+.....|+.++.. -|-...|+..|++ .+.+-....+|...|+..+|.....+-++ ..++..+..||++
T Consensus 397 ~Wq~q~~laell~s----lGitksAl~I~Er------lemw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv 466 (777)
T KOG1128|consen 397 IWQLQRLLAELLLS----LGITKSALVIFER------LEMWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDV 466 (777)
T ss_pred cchHHHHHHHHHHH----cchHHHHHHHHHh------HHHHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhh
Confidence 44455556666655 3456677777766 56777888899999999999999999998 4789999999999
Q ss_pred HHHHHHHHHHHHHHHc---CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcccH
Q 019734 179 YLQEEAVKLLYQASIA---GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSH 253 (336)
Q Consensus 179 ~~~~~A~~~~~ka~~~---~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~g~~~~~ 253 (336)
..+ -.+|+||.+. ....|++.+|..... .+|+.++...++.+.+. .....++.+|.+..+.. ++
T Consensus 467 ~~d---~s~yEkawElsn~~sarA~r~~~~~~~~----~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqle----k~ 535 (777)
T KOG1128|consen 467 LHD---PSLYEKAWELSNYISARAQRSLALLILS----NKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLE----KE 535 (777)
T ss_pred ccC---hHHHHHHHHHhhhhhHHHHHhhcccccc----chhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHh----hh
Confidence 976 3344444443 245688888888777 79999999999999654 67899999999998755 99
Q ss_pred HHHHHHHHHHHH--cCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHcCcHHHHHHHHHHHhhcChhcHHHHHHHHHHhhc
Q 019734 254 RQARKWMKRAAD--CGHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWRA 331 (336)
Q Consensus 254 ~~A~~~~~~a~~--~~~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 331 (336)
..|...|.+++. .++..++.||...|...++..+|...+++|+..+...-....+.+.....-+..++|+..+.++.+
T Consensus 536 q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 536 QAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 999999999986 488999999999999999999999999999986543333333445555566778888888877765
Q ss_pred C
Q 019734 332 M 332 (336)
Q Consensus 332 ~ 332 (336)
+
T Consensus 616 ~ 616 (777)
T KOG1128|consen 616 L 616 (777)
T ss_pred h
Confidence 4
No 81
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=3.1e-07 Score=82.12 Aligned_cols=191 Identities=16% Similarity=0.091 Sum_probs=145.7
Q ss_pred cCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHH----HHHHHHHH
Q 019734 118 RKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLG--DPAGQFNLGISYLQ----EEAVKLLY 189 (336)
Q Consensus 118 ~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~~~~----~~A~~~~~ 189 (336)
.+++..|+.+-+|+++. .+.+++..-|.++...+++++|+-.|+.|.... +.+.+-.|-.+|+. .+|...-.
T Consensus 313 ~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An 392 (564)
T KOG1174|consen 313 EKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALAN 392 (564)
T ss_pred hhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHH
Confidence 47888888888888887 477888888999988899999999998887664 45566666666665 45544444
Q ss_pred HHHHc--CCHHHHHHHH-HHHhcCCCCccCHHHHHHHHHHHH--HCCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHH
Q 019734 190 QASIA--GHVRAQYQLA-LCLHRGRGVDFNLQEAARWYLRAA--EGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAA 264 (336)
Q Consensus 190 ka~~~--~~~~a~~~lg-~~~~~g~g~~~~~~~A~~~~~~a~--~~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~ 264 (336)
-+... .++.+...+| .++... +.-.++|..+|++++ ++++..|...++.++.. ++.++.++..+++.+
T Consensus 393 ~~~~~~~~sA~~LtL~g~~V~~~d---p~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~----Eg~~~D~i~LLe~~L 465 (564)
T KOG1174|consen 393 WTIRLFQNSARSLTLFGTLVLFPD---PRMREKAKKFAEKSLKINPIYTPAVNLIAELCQV----EGPTKDIIKLLEKHL 465 (564)
T ss_pred HHHHHhhcchhhhhhhcceeeccC---chhHHHHHHHHHhhhccCCccHHHHHHHHHHHHh----hCccchHHHHHHHHH
Confidence 44432 4667777776 333321 456789999999996 46899999999999964 458999999999998
Q ss_pred Hc-CCHHHHHHHHHHhhccCCHHHHHHHHHHHHHcCcH--HHHHHHHHHHhhcC
Q 019734 265 DC-GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGET--AADHVKNVILQQLS 315 (336)
Q Consensus 265 ~~-~~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~~~--~a~~~~~~~~~~~~ 315 (336)
.. .+..-+..||.++...+.+++|+.+|.+|++.++. .+..-+..+.+...
T Consensus 466 ~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~~lEK~~~ 519 (564)
T KOG1174|consen 466 IIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGLRLLEKSDD 519 (564)
T ss_pred hhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHHHHHHhccC
Confidence 74 56677899999999999999999999999998754 45555556665554
No 82
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.93 E-value=3e-07 Score=90.65 Aligned_cols=122 Identities=11% Similarity=0.034 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHH--CCCHHHHHHHH
Q 019734 169 PAGQFNLGISYLQ----EEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAE--GGYVRAMYNTS 240 (336)
Q Consensus 169 ~~a~~~Lg~~~~~----~~A~~~~~ka~~~--~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~--~~~~~a~~~lg 240 (336)
++++++||.+... ++|..+++.+++. ++..|..+++.++.. .+.+++|..++++++. +.+..+++.+|
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~----~~~~eeA~~~~~~~l~~~p~~~~~~~~~a 161 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKR----QQGIEAGRAEIELYFSGGSSSAREILLEA 161 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH----hccHHHHHHHHHHHhhcCCCCHHHHHHHH
Confidence 4444444444444 4444444444332 344555555555554 4555555555555543 34555555555
Q ss_pred HHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhccCCHHHHHHHHHHHHHc
Q 019734 241 LCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRA 298 (336)
Q Consensus 241 ~~~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~ 298 (336)
.++.. .| .+++|...|++++.. +++.++.++|.++...|+.++|...|++|++.
T Consensus 162 ~~l~~-~g---~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 162 KSWDE-IG---QSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHH-hc---chHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 55533 22 555555555555543 33455555555555555555555555555553
No 83
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.93 E-value=1.8e-06 Score=79.27 Aligned_cols=222 Identities=13% Similarity=-0.024 Sum_probs=144.2
Q ss_pred HHHHHHhcCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHH
Q 019734 68 VLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGL 145 (336)
Q Consensus 68 ~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~ 145 (336)
....+...+..|++++|...+.++++..|. +..++.. +..+..-....+....+...+...... +...+...+|.
T Consensus 46 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~--~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~ 122 (355)
T cd05804 46 AHVEALSAWIAGDLPKALALLEQLLDDYPR--DLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAF 122 (355)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCC--cHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHH
Confidence 455666778899999999999999998776 5555543 333322001123444455444442222 34567778899
Q ss_pred HHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHH----HHHHHHHHHHHHcC--C----HHHHHHHHHHHhcCCCC
Q 019734 146 MYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQ----EEAVKLLYQASIAG--H----VRAQYQLALCLHRGRGV 213 (336)
Q Consensus 146 ~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~----~~A~~~~~ka~~~~--~----~~a~~~lg~~~~~g~g~ 213 (336)
++...|++++|+..++++++. +++.++..+|.++.. ++|+.+++++++.. . ...+..+|.++..
T Consensus 123 ~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~---- 198 (355)
T cd05804 123 GLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLE---- 198 (355)
T ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHH----
Confidence 999999999999999999865 678899999999988 99999999998753 1 2346689999988
Q ss_pred ccCHHHHHHHHHHHHHCCC---HHH-HHHHHHHHHcCCCCcccHHHHHHH--H-HHHHH--cC--CHHHHHHHHHHhhcc
Q 019734 214 DFNLQEAARWYLRAAEGGY---VRA-MYNTSLCYSFGEGLPLSHRQARKW--M-KRAAD--CG--HGKAQLEHGLGLFTE 282 (336)
Q Consensus 214 ~~~~~~A~~~~~~a~~~~~---~~a-~~~lg~~~~~~~g~~~~~~~A~~~--~-~~a~~--~~--~~~a~~~lg~~~~~~ 282 (336)
.+++++|+.+|+++..... ... .+..+..+..+. .......+..| + ..... .+ ........+.++...
T Consensus 199 ~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 277 (355)
T cd05804 199 RGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLE-LAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGA 277 (355)
T ss_pred CCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHH-hcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcC
Confidence 8999999999999864422 111 112211111110 01123333333 1 11111 11 112224566777788
Q ss_pred CCHHHHHHHHHHHHH
Q 019734 283 GEMMKAVVYLELATR 297 (336)
Q Consensus 283 ~~~~~A~~~~~~A~~ 297 (336)
|+.++|...++....
T Consensus 278 ~~~~~a~~~L~~l~~ 292 (355)
T cd05804 278 GDKDALDKLLAALKG 292 (355)
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999988755
No 84
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.89 E-value=2e-08 Score=79.31 Aligned_cols=90 Identities=13% Similarity=0.046 Sum_probs=50.1
Q ss_pred HHHHhcCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHH
Q 019734 70 NKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMY 147 (336)
Q Consensus 70 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~ 147 (336)
.-+...+..|++++|..+++-.....+. +++.+++||.++.. .+++++|+..|.+|+.+ +++.+.+++|.++
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~~~Dp~--~~~y~~gLG~~~Q~----~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~ 113 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLTIYDAW--SFDYWFRLGECCQA----QKHWGEAIYAYGRAAQIKIDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcc--cHHHHHHHHHHHHH----HhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 3344445555555555555555555444 55555555555555 45555555555555554 4555555555555
Q ss_pred hcCCCHHHHHHHHHHHHH
Q 019734 148 WEMDKKEAAISLYRQAAV 165 (336)
Q Consensus 148 ~~~~~~~~A~~~~~~a~~ 165 (336)
+..|+.+.|+..|+.++.
T Consensus 114 L~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 114 LACDNVCYAIKALKAVVR 131 (157)
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 555555555555555554
No 85
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.88 E-value=2.4e-06 Score=83.20 Aligned_cols=109 Identities=18% Similarity=0.126 Sum_probs=94.2
Q ss_pred cCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHH----HHHHHHHH
Q 019734 118 RKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAV--LGDPAGQFNLGISYLQ----EEAVKLLY 189 (336)
Q Consensus 118 ~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~Lg~~~~~----~~A~~~~~ 189 (336)
.||+++|.+.+...+++. ++.+++.||.+|...||.+++......|+- +++.+-|..++....+ ++|+-||.
T Consensus 152 rg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~ 231 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYS 231 (895)
T ss_pred hCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHH
Confidence 479999999999999984 899999999999999999999999999874 4889999999999988 99999999
Q ss_pred HHHHcC--CHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHC
Q 019734 190 QASIAG--HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG 230 (336)
Q Consensus 190 ka~~~~--~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~ 230 (336)
+|+... +-.-.++-..+|.+ .|+..+|...|.+.++.
T Consensus 232 rAI~~~p~n~~~~~ers~L~~~----~G~~~~Am~~f~~l~~~ 270 (895)
T KOG2076|consen 232 RAIQANPSNWELIYERSSLYQK----TGDLKRAMETFLQLLQL 270 (895)
T ss_pred HHHhcCCcchHHHHHHHHHHHH----hChHHHHHHHHHHHHhh
Confidence 999864 55677778888877 67788888777766543
No 86
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.86 E-value=3e-06 Score=79.98 Aligned_cols=248 Identities=15% Similarity=0.014 Sum_probs=182.8
Q ss_pred hcCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCC
Q 019734 74 ASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMD 151 (336)
Q Consensus 74 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~ 151 (336)
.....+-++-+..+|...++-.+ .....+.-+..+..- .+..+.-..+|++|+.. ....-+...+..++..|
T Consensus 525 ~~~k~~~~~carAVya~alqvfp---~k~slWlra~~~ek~---hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~ag 598 (913)
T KOG0495|consen 525 SCEKRPAIECARAVYAHALQVFP---CKKSLWLRAAMFEKS---HGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAG 598 (913)
T ss_pred HHHhcchHHHHHHHHHHHHhhcc---chhHHHHHHHHHHHh---cCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcC
Confidence 33445555556666666666533 334444444444443 34566777788888876 35566777788888889
Q ss_pred CHHHHHHHHHHHHHc--CCHHHHHHHHHHHHH----HHHHHHHHHHHHc-CCHHHHHHHHHHHhcCCCCccCHHHHHHHH
Q 019734 152 KKEAAISLYRQAAVL--GDPAGQFNLGISYLQ----EEAVKLLYQASIA-GHVRAQYQLALCLHRGRGVDFNLQEAARWY 224 (336)
Q Consensus 152 ~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~----~~A~~~~~ka~~~-~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~ 224 (336)
|...|+..+.+|.+. ++.+.++.--.+... +.|..+|.+|-.. +....++.-+.+... .++.++|+.++
T Consensus 599 dv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~----ld~~eeA~rll 674 (913)
T KOG0495|consen 599 DVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERY----LDNVEEALRLL 674 (913)
T ss_pred CcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHH----hhhHHHHHHHH
Confidence 999999999999876 344444433333333 8899999988554 677788777777665 67889999999
Q ss_pred HHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhccCCHHHHHHHHHHHHHcCc
Q 019734 225 LRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGE 300 (336)
Q Consensus 225 ~~a~~~--~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~~ 300 (336)
+.++.. ....-+..+|.++... ++.+.|...|...... +.+.-+..|+.+-...|+..+|...++++.-.++
T Consensus 675 Ee~lk~fp~f~Kl~lmlGQi~e~~----~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNP 750 (913)
T KOG0495|consen 675 EEALKSFPDFHKLWLMLGQIEEQM----ENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNP 750 (913)
T ss_pred HHHHHhCCchHHHHHHHhHHHHHH----HHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCC
Confidence 998875 5678888899998763 3888999888888764 5567778888877778899999999999988888
Q ss_pred HHHHHHHHHHHhhcChhcHHHHHHHHHHhhcCCCC
Q 019734 301 TAADHVKNVILQQLSATSRDRAMLVVDSWRAMPSL 335 (336)
Q Consensus 301 ~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 335 (336)
.++..++..+...+..+..++|..+..+.++.+|+
T Consensus 751 k~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~ 785 (913)
T KOG0495|consen 751 KNALLWLESIRMELRAGNKEQAELLMAKALQECPS 785 (913)
T ss_pred CcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 88888888888888888899999888888887775
No 87
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.86 E-value=1.2e-07 Score=84.29 Aligned_cols=161 Identities=21% Similarity=0.178 Sum_probs=107.3
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc----CC----HHHHHHHHHHHHH---HHHHHH
Q 019734 119 KNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL----GD----PAGQFNLGISYLQ---EEAVKL 187 (336)
Q Consensus 119 ~~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----~~----~~a~~~Lg~~~~~---~~A~~~ 187 (336)
.|+++|...|++|+ ..|...+++++|...|.++++. ++ ..++...+.+|.. ++|+.+
T Consensus 29 ~~~e~Aa~~y~~Aa------------~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~~~~~Ai~~ 96 (282)
T PF14938_consen 29 PDYEEAADLYEKAA------------NCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKGDPDEAIEC 96 (282)
T ss_dssp HHHHHHHHHHHHHH------------HHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred CCHHHHHHHHHHHH------------HHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCHHHHHHH
Confidence 36777777777764 3444556666666666665432 22 2334445555554 677777
Q ss_pred HHHHHH----cCC----HHHHHHHHHHHhcCCCCc-cCHHHHHHHHHHHHHC----CC----HHHHHHHHHHHHcCCCCc
Q 019734 188 LYQASI----AGH----VRAQYQLALCLHRGRGVD-FNLQEAARWYLRAAEG----GY----VRAMYNTSLCYSFGEGLP 250 (336)
Q Consensus 188 ~~ka~~----~~~----~~a~~~lg~~~~~g~g~~-~~~~~A~~~~~~a~~~----~~----~~a~~~lg~~~~~~~g~~ 250 (336)
|++|++ .|. ...+.++|.+|+. . +|+++|+++|++|++. +. ......+|.++....
T Consensus 97 ~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~----~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~--- 169 (282)
T PF14938_consen 97 YEKAIEIYREAGRFSQAAKCLKELAEIYEE----QLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLG--- 169 (282)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHHHCC----TT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT---
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhC---
Confidence 777765 343 4567899999988 5 8999999999999763 32 445678888886633
Q ss_pred ccHHHHHHHHHHHHHc--C----CH---HHHHHHHHHhhccCCHHHHHHHHHHHHHcC
Q 019734 251 LSHRQARKWMKRAADC--G----HG---KAQLEHGLGLFTEGEMMKAVVYLELATRAG 299 (336)
Q Consensus 251 ~~~~~A~~~~~~a~~~--~----~~---~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~ 299 (336)
++++|+..|++.+.. . .. ..++..+.++...||+..|...+++.....
T Consensus 170 -~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~ 226 (282)
T PF14938_consen 170 -RYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQD 226 (282)
T ss_dssp --HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTS
T ss_pred -CHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 999999999999863 1 11 234677889999999999999999988653
No 88
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.85 E-value=5.8e-08 Score=76.14 Aligned_cols=109 Identities=18% Similarity=0.084 Sum_probs=92.7
Q ss_pred HHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCcccHHHHHHHHH
Q 019734 186 KLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAE--GGYVRAMYNTSLCYSFGEGLPLSHRQARKWMK 261 (336)
Q Consensus 186 ~~~~ka~~~--~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~ 261 (336)
+.|++++.. ++..+.+.+|.++.. .+++++|..+|++++. +.++.+++.+|.++... +++++|..+|+
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~----~~~~~A~~~~~ 75 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQ----QGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQML----KEYEEAIDAYA 75 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHH----cccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 356677665 467888999999988 7999999999999865 46889999999999753 38999999999
Q ss_pred HHHHc--CCHHHHHHHHHHhhccCCHHHHHHHHHHHHHcCcHH
Q 019734 262 RAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETA 302 (336)
Q Consensus 262 ~a~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~~~~ 302 (336)
+++.. .++..++++|.+|...|++++|+.+|+++++..+.+
T Consensus 76 ~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 118 (135)
T TIGR02552 76 LAAALDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGEN 118 (135)
T ss_pred HHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence 99875 557888999999999999999999999999976544
No 89
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=6e-07 Score=82.74 Aligned_cols=96 Identities=22% Similarity=0.128 Sum_probs=82.0
Q ss_pred HHHHHHHHhcCCCCccCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCC--HHHHHHH
Q 019734 200 QYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGH--GKAQLEH 275 (336)
Q Consensus 200 ~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~~~--~~a~~~l 275 (336)
...-|..+.. .+||..|+..|.+|+.. .++..+.|.+.||.+.. ++..|+.-.+.+++.++ ..+++.=
T Consensus 361 ~r~kGne~Fk----~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~----~~~~aL~Da~~~ieL~p~~~kgy~RK 432 (539)
T KOG0548|consen 361 EREKGNEAFK----KGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLG----EYPEALKDAKKCIELDPNFIKAYLRK 432 (539)
T ss_pred HHHHHHHHHh----ccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHh----hHHHHHHHHHHHHhcCchHHHHHHHH
Confidence 4455777777 79999999999999864 78899999999998754 89999999999998744 6678888
Q ss_pred HHHhhccCCHHHHHHHHHHHHHcCcHHH
Q 019734 276 GLGLFTEGEMMKAVVYLELATRAGETAA 303 (336)
Q Consensus 276 g~~~~~~~~~~~A~~~~~~A~~~~~~~a 303 (336)
|.++....+|++|...|++|++.++...
T Consensus 433 g~al~~mk~ydkAleay~eale~dp~~~ 460 (539)
T KOG0548|consen 433 GAALRAMKEYDKALEAYQEALELDPSNA 460 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCchhH
Confidence 9999999999999999999999875544
No 90
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.81 E-value=1.1e-07 Score=87.19 Aligned_cols=110 Identities=15% Similarity=0.044 Sum_probs=99.2
Q ss_pred HHHHHHHHhcCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHH
Q 019734 66 FDVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDA 143 (336)
Q Consensus 66 ~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~l 143 (336)
..+..++..++..+++.+|+.++.+.++..+. ++.+++.+|.+|.. .+++++|+..+++|+.+ .++.+++.+
T Consensus 3 ~~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~--~~~a~~~~a~~~~~----~g~~~eAl~~~~~Al~l~P~~~~a~~~l 76 (356)
T PLN03088 3 KDLEDKAKEAFVDDDFALAVDLYTQAIDLDPN--NAELYADRAQANIK----LGNFTEAVADANKAIELDPSLAKAYLRK 76 (356)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCcCCHHHHHHH
Confidence 35678888999999999999999999999887 89999999999998 68999999999999987 589999999
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHH
Q 019734 144 GLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQ 181 (336)
Q Consensus 144 g~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~ 181 (336)
|.+|...|++++|+.+|+++++. +++.+...++.+...
T Consensus 77 g~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~k 116 (356)
T PLN03088 77 GTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEK 116 (356)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999866 788988888888654
No 91
>PLN03077 Protein ECB2; Provisional
Probab=98.80 E-value=1.6e-06 Score=89.02 Aligned_cols=200 Identities=12% Similarity=0.005 Sum_probs=109.6
Q ss_pred CCHHHHHHHHHHHHHcC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----HHHHHHHHHH
Q 019734 119 KNLDKALDSFLKGAARG---STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAGQFNLGISYLQ----EEAVKLLYQA 191 (336)
Q Consensus 119 ~~~~~A~~~~~~A~~~~---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~----~~A~~~~~ka 191 (336)
+++++|.+.++.+.+.| +...+..|-..|.+.|+.++|...|.+..+ .+...|..+...|.. ++|+..|++.
T Consensus 403 g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~-~d~vs~~~mi~~~~~~g~~~eA~~lf~~m 481 (857)
T PLN03077 403 GDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE-KDVISWTSIIAGLRLNNRCFEALIFFRQM 481 (857)
T ss_pred chHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC-CCeeeHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 34444444444444432 334445555566666666666666665433 233445555555544 6666666665
Q ss_pred HHcCC--HHHHH-----------------------------------HHHHHHhcCCCCccCHHHHHHHHHHHHHCCCHH
Q 019734 192 SIAGH--VRAQY-----------------------------------QLALCLHRGRGVDFNLQEAARWYLRAAEGGYVR 234 (336)
Q Consensus 192 ~~~~~--~~a~~-----------------------------------~lg~~~~~g~g~~~~~~~A~~~~~~a~~~~~~~ 234 (336)
...-. ...+. .|-.+|.. .++.++|...|+.. ..+..
T Consensus 482 ~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k----~G~~~~A~~~f~~~--~~d~~ 555 (857)
T PLN03077 482 LLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVR----CGRMNYAWNQFNSH--EKDVV 555 (857)
T ss_pred HhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHH----cCCHHHHHHHHHhc--CCChh
Confidence 43211 11111 11122332 46666776666665 55666
Q ss_pred HHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcC---CHHHHHHHHHHhhccCCHHHHHHHHHHHH-HcC-cHHHHHHHHH
Q 019734 235 AMYNTSLCYSFGEGLPLSHRQARKWMKRAADCG---HGKAQLEHGLGLFTEGEMMKAVVYLELAT-RAG-ETAADHVKNV 309 (336)
Q Consensus 235 a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~A~~~~~~A~-~~~-~~~a~~~~~~ 309 (336)
+|..+...|... ++.++|+..|++..+.| +...+..+-..+...|+.++|..+|+... ..| .++...+...
T Consensus 556 s~n~lI~~~~~~----G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~l 631 (857)
T PLN03077 556 SWNILLTGYVAH----GKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACV 631 (857)
T ss_pred hHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHH
Confidence 666666666442 27777777777776643 23334444455667777788888777777 333 3444444444
Q ss_pred HHhhcChhcHHHHHHHHHHh
Q 019734 310 ILQQLSATSRDRAMLVVDSW 329 (336)
Q Consensus 310 ~~~~~~~~~~~~a~~~~~~~ 329 (336)
+......++.++|.++.++.
T Consensus 632 v~~l~r~G~~~eA~~~~~~m 651 (857)
T PLN03077 632 VDLLGRAGKLTEAYNFINKM 651 (857)
T ss_pred HHHHHhCCCHHHHHHHHHHC
Confidence 44444566677777777765
No 92
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.79 E-value=1.8e-07 Score=73.89 Aligned_cols=96 Identities=16% Similarity=0.096 Sum_probs=83.8
Q ss_pred CHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHH--HCCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHH
Q 019734 196 HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAA--EGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKA 271 (336)
Q Consensus 196 ~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~--~~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a 271 (336)
.-+..|.+|..+.. .+++++|...|+-.+ ++.+...+++||.++.. .+++.+|+..|.+|+.. +++.+
T Consensus 34 ~l~~lY~~A~~ly~----~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~----~g~~~~AI~aY~~A~~L~~ddp~~ 105 (157)
T PRK15363 34 PLNTLYRYAMQLME----VKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQA----QKHWGEAIYAYGRAAQIKIDAPQA 105 (157)
T ss_pred HHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH----HhhHHHHHHHHHHHHhcCCCCchH
Confidence 34567888887777 799999999999885 56789999999999965 44999999999999874 78999
Q ss_pred HHHHHHHhhccCCHHHHHHHHHHHHHcC
Q 019734 272 QLEHGLGLFTEGEMMKAVVYLELATRAG 299 (336)
Q Consensus 272 ~~~lg~~~~~~~~~~~A~~~~~~A~~~~ 299 (336)
.+++|.++...|+.+.|...|+.|++..
T Consensus 106 ~~~ag~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 106 PWAAAECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999864
No 93
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.78 E-value=1.2e-05 Score=76.81 Aligned_cols=144 Identities=10% Similarity=-0.009 Sum_probs=106.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHC---------------CC----HHHHHHHHHH
Q 019734 182 EEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG---------------GY----VRAMYNTSLC 242 (336)
Q Consensus 182 ~~A~~~~~ka~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~---------------~~----~~a~~~lg~~ 242 (336)
..+..|+...+..|.|....+|-.+|.. .....--......-... .. ..+++.|+..
T Consensus 128 ~~~~~yl~~~l~KgvPslF~~lk~Ly~d----~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqh 203 (517)
T PF12569_consen 128 ERLDEYLRPQLRKGVPSLFSNLKPLYKD----PEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQH 203 (517)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHcC----hhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHH
Confidence 6677777777888888888888888764 22222222222221110 01 2456788888
Q ss_pred HHcCCCCcccHHHHHHHHHHHHHcC--CHHHHHHHHHHhhccCCHHHHHHHHHHHHHcCcHHHHHHHHHHHhhcChhcHH
Q 019734 243 YSFGEGLPLSHRQARKWMKRAADCG--HGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSRD 320 (336)
Q Consensus 243 ~~~~~g~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~~~~a~~~~~~~~~~~~~~~~~ 320 (336)
|.. .+++++|+.+..+|++.. .++.++.-|.++...|++.+|..+++.|...+..+--.+-..+.-.+..++.+
T Consensus 204 yd~----~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e 279 (517)
T PF12569_consen 204 YDY----LGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIE 279 (517)
T ss_pred HHH----hCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHH
Confidence 855 339999999999999964 47788899999999999999999999999998877777777777777888999
Q ss_pred HHHHHHHHhhcCC
Q 019734 321 RAMLVVDSWRAMP 333 (336)
Q Consensus 321 ~a~~~~~~~~~~~ 333 (336)
+|..++....+..
T Consensus 280 ~A~~~~~~Ftr~~ 292 (517)
T PF12569_consen 280 EAEKTASLFTRED 292 (517)
T ss_pred HHHHHHHhhcCCC
Confidence 9999888776543
No 94
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.77 E-value=2.9e-07 Score=72.10 Aligned_cols=100 Identities=15% Similarity=0.074 Sum_probs=52.7
Q ss_pred HHHHHHHc--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHH----HHHHHHHHHHHHc--CC
Q 019734 127 SFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQ----EEAVKLLYQASIA--GH 196 (336)
Q Consensus 127 ~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~----~~A~~~~~ka~~~--~~ 196 (336)
.|++++.. .+..+.+.+|..+...|++++|+.+|++++.. .++.+++.+|.++.. ++|+.+|+++++. .+
T Consensus 5 ~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~ 84 (135)
T TIGR02552 5 TLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDD 84 (135)
T ss_pred hHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34444444 24455555666666666666666666555432 344555555555543 4444444444433 24
Q ss_pred HHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHC
Q 019734 197 VRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG 230 (336)
Q Consensus 197 ~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~ 230 (336)
+..++++|.+|.. .+++++|+.+|+++++.
T Consensus 85 ~~~~~~la~~~~~----~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 85 PRPYFHAAECLLA----LGEPESALKALDLAIEI 114 (135)
T ss_pred hHHHHHHHHHHHH----cCCHHHHHHHHHHHHHh
Confidence 4555555555555 55666666666665543
No 95
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.77 E-value=9.3e-06 Score=76.60 Aligned_cols=256 Identities=11% Similarity=-0.015 Sum_probs=172.8
Q ss_pred HHHHHHHhcCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHH
Q 019734 67 DVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAG 144 (336)
Q Consensus 67 ~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg 144 (336)
.++..+...|..++|......++..+++.|+.| +.+-..|+.+.. .++-++|..+-+.++.. .+...|.-+|
T Consensus 9 ~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHg--eslAmkGL~L~~----lg~~~ea~~~vr~glr~d~~S~vCwHv~g 82 (700)
T KOG1156|consen 9 ALFRRALKCYETKQYKKGLKLIKQILKKFPEHG--ESLAMKGLTLNC----LGKKEEAYELVRLGLRNDLKSHVCWHVLG 82 (700)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccc--hhHHhccchhhc----ccchHHHHHHHHHHhccCcccchhHHHHH
Confidence 457888888999999999999999999988844 555556766544 68999999999999876 4678889999
Q ss_pred HHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHH-----HHHHHHHHHH-HHcCCHHHHHHHHHHHhcCCCCccC
Q 019734 145 LMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQ-----EEAVKLLYQA-SIAGHVRAQYQLALCLHRGRGVDFN 216 (336)
Q Consensus 145 ~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~-----~~A~~~~~ka-~~~~~~~a~~~lg~~~~~g~g~~~~ 216 (336)
.++...+++++|+.+|+.|+.. +|.+.+..|+.+-.+ ..+...++.. +.++....|.-++..+.. .++
T Consensus 83 l~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L----~g~ 158 (700)
T KOG1156|consen 83 LLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHL----LGE 158 (700)
T ss_pred HHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHH----HHH
Confidence 9999999999999999999855 788888888877766 2222222222 223555666666666665 678
Q ss_pred HHHHHHHHHHHHHCC----------CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhccCC
Q 019734 217 LQEAARWYLRAAEGG----------YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGE 284 (336)
Q Consensus 217 ~~~A~~~~~~a~~~~----------~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~ 284 (336)
+..|....+.-.... ...+...-...... .| ..++|.+.+.+--.. +.......-+.++...++
T Consensus 159 y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E-~g---~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~ 234 (700)
T KOG1156|consen 159 YKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIE-AG---SLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQ 234 (700)
T ss_pred HHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHH-cc---cHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhh
Confidence 888887665543221 12222222222222 12 466777666554321 222233455778888999
Q ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHhhc-ChhcHHHHHHHHHHhhcCCCCC
Q 019734 285 MMKAVVYLELATRAGETAADHVKNVILQQL-SATSRDRAMLVVDSWRAMPSLH 336 (336)
Q Consensus 285 ~~~A~~~~~~A~~~~~~~a~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~~~~ 336 (336)
+++|...|...+...+.+-.++........ ..+.......+....-..+|.|
T Consensus 235 lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~ 287 (700)
T KOG1156|consen 235 LEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRH 287 (700)
T ss_pred HHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCccc
Confidence 999999999999887776666554433332 2333344445666666666654
No 96
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.75 E-value=4.5e-07 Score=81.09 Aligned_cols=219 Identities=14% Similarity=0.015 Sum_probs=149.4
Q ss_pred HHHHHHHhcCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHH
Q 019734 67 DVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAG 144 (336)
Q Consensus 67 ~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg 144 (336)
+........+...+|..|...+-...+..|+ ++..+.+.+..+.. .+++++|.-..++.++. +.+.++...+
T Consensus 51 ~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd--~a~yy~nRAa~~m~----~~~~~~a~~dar~~~r~kd~~~k~~~r~~ 124 (486)
T KOG0550|consen 51 EAKEEGNAFYKQKTYGNALKNYTFAIDMCPD--NASYYSNRAATLMM----LGRFEEALGDARQSVRLKDGFSKGQLREG 124 (486)
T ss_pred HHHhhcchHHHHhhHHHHHHHHHHHHHhCcc--chhhhchhHHHHHH----HHhHhhcccchhhheecCCCccccccchh
Confidence 3444555567778888898888888888877 56666666666665 35666666666666554 3444555555
Q ss_pred HHHhcCCCHHHHHHHHH----------------------------------------------------HHHH--cCCHH
Q 019734 145 LMYWEMDKKEAAISLYR----------------------------------------------------QAAV--LGDPA 170 (336)
Q Consensus 145 ~~~~~~~~~~~A~~~~~----------------------------------------------------~a~~--~~~~~ 170 (336)
.++...++..+|.+.|+ ..+. ..+.+
T Consensus 125 ~c~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~ 204 (486)
T KOG0550|consen 125 QCHLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAE 204 (486)
T ss_pred hhhhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhH
Confidence 55555555555544333 2222 23555
Q ss_pred HHHHHHHHHHH----HHHHHHHHHHHHcCC--H------------HHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHCC-
Q 019734 171 GQFNLGISYLQ----EEAVKLLYQASIAGH--V------------RAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGG- 231 (336)
Q Consensus 171 a~~~Lg~~~~~----~~A~~~~~ka~~~~~--~------------~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~~- 231 (336)
+.+--|.++.. ++|+..|++++..+. . ..+-+-|.-... .|++.+|.+.|..|+..+
T Consensus 205 al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk----~G~y~~A~E~Yteal~idP 280 (486)
T KOG0550|consen 205 ALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFK----NGNYRKAYECYTEALNIDP 280 (486)
T ss_pred HHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhh----ccchhHHHHHHHHhhcCCc
Confidence 66666666655 999999999987642 1 123333433333 689999999999997653
Q ss_pred -----CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCC--HHHHHHHHHHhhccCCHHHHHHHHHHHHHcC
Q 019734 232 -----YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGH--GKAQLEHGLGLFTEGEMMKAVVYLELATRAG 299 (336)
Q Consensus 232 -----~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~~~--~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~ 299 (336)
++..+.+.+.+... .| +.++|+.--..++..+. ..++..-|.++...+++++|++.|++++...
T Consensus 281 ~n~~~naklY~nra~v~~r-Lg---rl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 281 SNKKTNAKLYGNRALVNIR-LG---RLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred cccchhHHHHHHhHhhhcc-cC---CchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34456666666644 22 89999999999988754 6777888999999999999999999999764
No 97
>PLN03077 Protein ECB2; Provisional
Probab=98.75 E-value=3.8e-06 Score=86.20 Aligned_cols=196 Identities=9% Similarity=-0.031 Sum_probs=102.0
Q ss_pred CHHHHHHHHHHHHHcC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----HHHHHHHHHHH
Q 019734 120 NLDKALDSFLKGAARG---STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAGQFNLGISYLQ----EEAVKLLYQAS 192 (336)
Q Consensus 120 ~~~~A~~~~~~A~~~~---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~----~~A~~~~~ka~ 192 (336)
+.+.|.+.+....+.| +...+..|...|...|++++|...|.+... .+...|..+...|.. ++|+..|++..
T Consensus 303 ~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~-~d~~s~n~li~~~~~~g~~~~A~~lf~~M~ 381 (857)
T PLN03077 303 DERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET-KDAVSWTAMISGYEKNGLPDKALETYALME 381 (857)
T ss_pred ChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC-CCeeeHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 3444444444443332 344455555555556666666666655432 334455555555555 66666666554
Q ss_pred HcC---CHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc
Q 019734 193 IAG---HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGG---YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC 266 (336)
Q Consensus 193 ~~~---~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~ 266 (336)
+.+ +...+..+=..+.. .++.++|.+.+..+.+.| +...+..|-.+|.+. ++.++|.+.|++..+
T Consensus 382 ~~g~~Pd~~t~~~ll~a~~~----~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~----g~~~~A~~vf~~m~~- 452 (857)
T PLN03077 382 QDNVSPDEITIASVLSACAC----LGDLDVGVKLHELAERKGLISYVVVANALIEMYSKC----KCIDKALEVFHNIPE- 452 (857)
T ss_pred HhCCCCCceeHHHHHHHHhc----cchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHc----CCHHHHHHHHHhCCC-
Confidence 433 12222222222323 456666666666665543 344555566666542 277777777776543
Q ss_pred CCHHHHHHHHHHhhccCCHHHHHHHHHHHHHcCcHHHHHHHHHHHhhcChhcHHHHHHH
Q 019734 267 GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSRDRAMLV 325 (336)
Q Consensus 267 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~ 325 (336)
.+...+..+...|...|+.++|+..|++....-.++...+...+......+..+.++++
T Consensus 453 ~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i 511 (857)
T PLN03077 453 KDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEI 511 (857)
T ss_pred CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHH
Confidence 34455666666677777777777777777654344443333333333333333333333
No 98
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=1.3e-06 Score=78.21 Aligned_cols=188 Identities=10% Similarity=-0.042 Sum_probs=158.7
Q ss_pred HHHHHHhcCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcC--CHHHHHHHHH
Q 019734 68 VLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGL 145 (336)
Q Consensus 68 ~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~ 145 (336)
++..+...+...++..|.....+..+..+. +..++..-|.++.. .+++++|+-.|+.|..+. .-+.+..|-.
T Consensus 303 wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r--~~~alilKG~lL~~----~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~h 376 (564)
T KOG1174|consen 303 WFVHAQLLYDEKKFERALNFVEKCIDSEPR--NHEALILKGRLLIA----LERHTQAVIAFRTAQMLAPYRLEIYRGLFH 376 (564)
T ss_pred hhhhhhhhhhhhhHHHHHHHHHHHhccCcc--cchHHHhccHHHHh----ccchHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 344455567888999998888888777655 88899999999988 589999999999999885 5677888888
Q ss_pred HHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHH-HHHHH-----HHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCcc
Q 019734 146 MYWEMDKKEAAISLYRQAAVL--GDPAGQFNLG-ISYLQ-----EEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDF 215 (336)
Q Consensus 146 ~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg-~~~~~-----~~A~~~~~ka~~~--~~~~a~~~lg~~~~~g~g~~~ 215 (336)
.|...|.+.+|...-+.++.. .++.++..+| .++.. ++|...+++++.. ++..|-..++.++.. .+
T Consensus 377 sYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~----Eg 452 (564)
T KOG1174|consen 377 SYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQV----EG 452 (564)
T ss_pred HHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHh----hC
Confidence 999999999999999988876 7888888887 66655 9999999999765 789999999999987 78
Q ss_pred CHHHHHHHHHHHH-HCCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCCH
Q 019734 216 NLQEAARWYLRAA-EGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHG 269 (336)
Q Consensus 216 ~~~~A~~~~~~a~-~~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~~~~ 269 (336)
.+..++..+++++ ...|..-+..||.++.. ...+.+|+.+|.+|+.+++.
T Consensus 453 ~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A----~Ne~Q~am~~y~~ALr~dP~ 503 (564)
T KOG1174|consen 453 PTKDIIKLLEKHLIIFPDVNLHNHLGDIMRA----QNEPQKAMEYYYKALRQDPK 503 (564)
T ss_pred ccchHHHHHHHHHhhccccHHHHHHHHHHHH----hhhHHHHHHHHHHHHhcCcc
Confidence 8999999999995 45788889999999965 33899999999999987553
No 99
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.74 E-value=8e-07 Score=87.15 Aligned_cols=257 Identities=14% Similarity=0.036 Sum_probs=150.9
Q ss_pred HHHHhcCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcC--CHHHHHHHHHHH
Q 019734 70 NKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMY 147 (336)
Q Consensus 70 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~ 147 (336)
.....+++.+++..++..++..++..|. +..+|..||.+|.. .|.+..|++-|.+|..++ +..+.|..+.+.
T Consensus 567 ~rG~yyLea~n~h~aV~~fQsALR~dPk--D~n~W~gLGeAY~~----sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~e 640 (1238)
T KOG1127|consen 567 QRGPYYLEAHNLHGAVCEFQSALRTDPK--DYNLWLGLGEAYPE----SGRYSHALKVFTKASLLRPLSKYGRFKEAVME 640 (1238)
T ss_pred hccccccCccchhhHHHHHHHHhcCCch--hHHHHHHHHHHHHh----cCceehHHHhhhhhHhcCcHhHHHHHHHHHHH
Confidence 3444566788888998888888888877 78889999999988 478889999999888774 556677778888
Q ss_pred hcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHH-----------HHHHHHHHHHHH-------c---CCHH------
Q 019734 148 WEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQ-----------EEAVKLLYQASI-------A---GHVR------ 198 (336)
Q Consensus 148 ~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~-----------~~A~~~~~ka~~-------~---~~~~------ 198 (336)
...|.+.+|+..+...+.. ....++..||.++.. .+|..+++++++ . .+.-
T Consensus 641 cd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~as 720 (1238)
T KOG1127|consen 641 CDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVAS 720 (1238)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHh
Confidence 8888888888888876643 222333344444443 444444444432 0 1111
Q ss_pred --------------HHHHHHHHHh--cCCCCccCHH---HHHHHHHHHHHC-CCHHHHHHHHHHHHc-----CCCCcccH
Q 019734 199 --------------AQYQLALCLH--RGRGVDFNLQ---EAARWYLRAAEG-GYVRAMYNTSLCYSF-----GEGLPLSH 253 (336)
Q Consensus 199 --------------a~~~lg~~~~--~g~g~~~~~~---~A~~~~~~a~~~-~~~~a~~~lg~~~~~-----~~g~~~~~ 253 (336)
....++.+.. .+.++.++.+ .+.+++-..+.. .++..|++||..|.. +. ...+.
T Consensus 721 dac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~e-t~~~~ 799 (1238)
T KOG1127|consen 721 DACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGE-TMKDA 799 (1238)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCC-cchhH
Confidence 1111222211 1222222223 344444444332 346666677666644 22 23344
Q ss_pred HHHHHHHHHHHHc--CCHHHHHHHHHHhhccCCHHHHHHHHHHHHHcCcHHHHHHHHHHHhhcChhcHHHHHHHHHHhhc
Q 019734 254 RQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWRA 331 (336)
Q Consensus 254 ~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 331 (336)
..|+.++++++.. ++...+..||.+ ...|++.-|.++|-++.-..+.....+.+...-.+...+.+.|....+..+.
T Consensus 800 ~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qS 878 (1238)
T KOG1127|consen 800 CTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQS 878 (1238)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHhhhh
Confidence 5777777777664 444455566664 4446666666666666665555555555544445555555566666555555
Q ss_pred CCC
Q 019734 332 MPS 334 (336)
Q Consensus 332 ~~~ 334 (336)
+.|
T Consensus 879 LdP 881 (1238)
T KOG1127|consen 879 LDP 881 (1238)
T ss_pred cCc
Confidence 544
No 100
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.71 E-value=1.5e-06 Score=86.88 Aligned_cols=121 Identities=13% Similarity=0.058 Sum_probs=60.3
Q ss_pred CHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCHHHHHHH-----------------H
Q 019734 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISL-----------------Y 160 (336)
Q Consensus 100 ~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~-----------------~ 160 (336)
+..++..|..+|.. .+++++|+...+.++.. +....++.+|.++...+++.++... |
T Consensus 30 n~~a~~~Li~~~~~----~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv~~l~~~~~~~~~~~ve~~ 105 (906)
T PRK14720 30 KFKELDDLIDAYKS----ENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLLNLIDSFSQNLKWAIVEHI 105 (906)
T ss_pred hHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhhhhhhhcccccchhHHHHH
Confidence 44455555555533 24555555555544443 2344455555555444433333322 1
Q ss_pred HHHH-Hc-CCHHHHHHHHHHHHH----HHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHH
Q 019734 161 RQAA-VL-GDPAGQFNLGISYLQ----EEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAE 229 (336)
Q Consensus 161 ~~a~-~~-~~~~a~~~Lg~~~~~----~~A~~~~~ka~~~--~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~ 229 (336)
-+.+ +. ++..|++.||.||.. ++|+..|+++++. .++.++.++|..|.. . |.++|+.++.+|+.
T Consensus 106 ~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae----~-dL~KA~~m~~KAV~ 177 (906)
T PRK14720 106 CDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEE----E-DKEKAITYLKKAIY 177 (906)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHH----h-hHHHHHHHHHHHHH
Confidence 1111 11 223466666666654 6666666666554 355666666666655 3 66666666666643
No 101
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.71 E-value=2.1e-06 Score=72.63 Aligned_cols=148 Identities=16% Similarity=0.095 Sum_probs=85.3
Q ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHH----HHHHHHHHHHHHc--CCHHHHHHHHHH
Q 019734 135 GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQ----EEAVKLLYQASIA--GHVRAQYQLALC 206 (336)
Q Consensus 135 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~----~~A~~~~~ka~~~--~~~~a~~~lg~~ 206 (336)
++..+ ..+...+...|+-+.+..+..+++.. .+.+.+..+|..... ..|+..+.+++.. .+.+++..+|.+
T Consensus 65 ~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaa 143 (257)
T COG5010 65 EDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAA 143 (257)
T ss_pred chHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHH
Confidence 34555 66666666667666666666664432 344444445555544 6666666666543 455666666666
Q ss_pred HhcCCCCccCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhcc
Q 019734 207 LHRGRGVDFNLQEAARWYLRAAE--GGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTE 282 (336)
Q Consensus 207 ~~~g~g~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~ 282 (336)
|.+ .++.+.|..-|.++++ ++++....|||..|.- .+|++.|..++..+... .+.....||+.+....
T Consensus 144 ldq----~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L----~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~ 215 (257)
T COG5010 144 LDQ----LGRFDEARRAYRQALELAPNEPSIANNLGMSLLL----RGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQ 215 (257)
T ss_pred HHH----ccChhHHHHHHHHHHHhccCCchhhhhHHHHHHH----cCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhc
Confidence 665 5666666666666643 3556666666666642 22666666666666543 2344455666666666
Q ss_pred CCHHHHHHH
Q 019734 283 GEMMKAVVY 291 (336)
Q Consensus 283 ~~~~~A~~~ 291 (336)
|++.+|...
T Consensus 216 g~~~~A~~i 224 (257)
T COG5010 216 GDFREAEDI 224 (257)
T ss_pred CChHHHHhh
Confidence 666665544
No 102
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.71 E-value=1.2e-06 Score=87.56 Aligned_cols=203 Identities=13% Similarity=0.029 Sum_probs=139.8
Q ss_pred HHHHHhcCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCC--------------CCcCCHHHHHHHHHHHHHc
Q 019734 69 LNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGR--------------GVRKNLDKALDSFLKGAAR 134 (336)
Q Consensus 69 l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~--------------g~~~~~~~A~~~~~~A~~~ 134 (336)
...+......++++++..++...++..|+ ...+++.+|.++..-. ....++ .++.+|...+..
T Consensus 35 ~~Li~~~~~~~~~deai~i~~~~l~~~P~--~i~~yy~~G~l~~q~~~~~~~~lv~~l~~~~~~~~~-~~ve~~~~~i~~ 111 (906)
T PRK14720 35 DDLIDAYKSENLTDEAKDICEEHLKEHKK--SISALYISGILSLSRRPLNDSNLLNLIDSFSQNLKW-AIVEHICDKILL 111 (906)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCc--ceehHHHHHHHHHhhcchhhhhhhhhhhhcccccch-hHHHHHHHHHHh
Confidence 33333334889999999999988888777 8889999999887711 011123 556666665543
Q ss_pred --CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHH---HHHHHHHHHHHHc-----CCHHHHHH
Q 019734 135 --GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQ---EEAVKLLYQASIA-----GHVRAQYQ 202 (336)
Q Consensus 135 --~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~---~~A~~~~~ka~~~-----~~~~a~~~ 202 (336)
.+..|++.||.+|...|+.++|...|+++++. +++.+++++|..|.. ++|++++.+|+.. .+....-.
T Consensus 112 ~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~dL~KA~~m~~KAV~~~i~~kq~~~~~e~ 191 (906)
T PRK14720 112 YGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEEDKEKAITYLKKAIYRFIKKKQYVGIEEI 191 (906)
T ss_pred hhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcchHHHHH
Confidence 45679999999999999999999999999865 789999999999988 9999999999764 12222222
Q ss_pred HHHHHhcCCCCccCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHH
Q 019734 203 LALCLHRGRGVDFNLQEAARWYLRAAEG-G---YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHG 276 (336)
Q Consensus 203 lg~~~~~g~g~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg 276 (336)
+-.++... +.|.+.=....++.... + -...+.-|=.+|..+ +++++++..++++++. .+..+.+.|.
T Consensus 192 W~k~~~~~---~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~----~~~~~~i~iLK~iL~~~~~n~~a~~~l~ 264 (906)
T PRK14720 192 WSKLVHYN---SDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKAL----EDWDEVIYILKKILEHDNKNNKAREELI 264 (906)
T ss_pred HHHHHhcC---cccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhh----hhhhHHHHHHHHHHhcCCcchhhHHHHH
Confidence 22222220 23333333333333322 2 233444455666543 3899999999999885 5567778888
Q ss_pred HHhhc
Q 019734 277 LGLFT 281 (336)
Q Consensus 277 ~~~~~ 281 (336)
.+|..
T Consensus 265 ~~y~~ 269 (906)
T PRK14720 265 RFYKE 269 (906)
T ss_pred HHHHH
Confidence 87763
No 103
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.68 E-value=3.2e-05 Score=68.00 Aligned_cols=194 Identities=19% Similarity=0.157 Sum_probs=158.1
Q ss_pred CHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHH
Q 019734 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNL 175 (336)
Q Consensus 100 ~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~L 175 (336)
++.-++.||.-++. .+++..|+..|..|++.+ +-.+.|..|.+|...|+..-|+.-+.+.++. +...|-...
T Consensus 37 dvekhlElGk~lla----~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQR 112 (504)
T KOG0624|consen 37 DVEKHLELGKELLA----RGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQR 112 (504)
T ss_pred HHHHHHHHHHHHHH----hhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHh
Confidence 56678889998887 589999999999999874 6789999999999999999999999999876 677888899
Q ss_pred HHHHHH----HHHHHHHHHHHHcC-----CHHHHHHHHHHHhc--------CCCCccCHHHHHHHHHHHHHCC--CHHHH
Q 019734 176 GISYLQ----EEAVKLLYQASIAG-----HVRAQYQLALCLHR--------GRGVDFNLQEAARWYLRAAEGG--YVRAM 236 (336)
Q Consensus 176 g~~~~~----~~A~~~~~ka~~~~-----~~~a~~~lg~~~~~--------g~g~~~~~~~A~~~~~~a~~~~--~~~a~ 236 (336)
|.+++. ++|..-|.+.++.+ .-+++-.|+.+-+. .+-..+|+..++.+....++.. ++.-.
T Consensus 113 g~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~ 192 (504)
T KOG0624|consen 113 GVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLR 192 (504)
T ss_pred chhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHH
Confidence 999988 99999999998753 23455444443211 0112589999999999998765 55556
Q ss_pred HHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhccCCHHHHHHHHHHHHHcCcH
Q 019734 237 YNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGET 301 (336)
Q Consensus 237 ~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~~~ 301 (336)
...+.||.. ..+..+|+.-++.+... ++.+..|.+..+++..|+.+.+..-.+..+..++.
T Consensus 193 ~~Rakc~i~----~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpd 255 (504)
T KOG0624|consen 193 QARAKCYIA----EGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPD 255 (504)
T ss_pred HHHHHHHHh----cCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcc
Confidence 677888865 33899999999999774 78999999999999999999999999999887654
No 104
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.68 E-value=5.4e-06 Score=75.93 Aligned_cols=146 Identities=20% Similarity=0.116 Sum_probs=91.2
Q ss_pred CHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 019734 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAGQFNLGI 177 (336)
Q Consensus 100 ~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~ 177 (336)
...++|..+..+.. .+++++|...+...+.. +|+..+-..+.++...++..+|.+.+++++..
T Consensus 305 ~~aa~YG~A~~~~~----~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l----------- 369 (484)
T COG4783 305 GLAAQYGRALQTYL----AGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALAL----------- 369 (484)
T ss_pred chHHHHHHHHHHHH----hcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-----------
Confidence 55666666666666 46666666666665543 56666666666666666666666666666533
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHH--HCCCHHHHHHHHHHHHcCCCCcccHHH
Q 019734 178 SYLQEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAA--EGGYVRAMYNTSLCYSFGEGLPLSHRQ 255 (336)
Q Consensus 178 ~~~~~~A~~~~~ka~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~--~~~~~~a~~~lg~~~~~~~g~~~~~~~ 255 (336)
..+.+-...++|..|.. .+++.+|+..+++.. ++.++..|..|+..|...
T Consensus 370 ---------------~P~~~~l~~~~a~all~----~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~--------- 421 (484)
T COG4783 370 ---------------DPNSPLLQLNLAQALLK----GGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAEL--------- 421 (484)
T ss_pred ---------------CCCccHHHHHHHHHHHh----cCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHh---------
Confidence 11234445556666666 566777777777764 346777788888777531
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHc
Q 019734 256 ARKWMKRAADCGHGKAQLEHGLGLFTEGEMMKAVVYLELATRA 298 (336)
Q Consensus 256 A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~ 298 (336)
.+...+....+..|.-.|++++|+..+..|...
T Consensus 422 ----------g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 422 ----------GNRAEALLARAEGYALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred ----------CchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 123444555566666677888888888877654
No 105
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.68 E-value=0.00017 Score=64.60 Aligned_cols=232 Identities=16% Similarity=-0.007 Sum_probs=156.0
Q ss_pred HHHHHHhcCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc-CC--HHHHHHHH
Q 019734 68 VLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR-GS--TLAMVDAG 144 (336)
Q Consensus 68 ~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~-~~--~~a~~~lg 144 (336)
.+..+...+..|+|.+|..+..++.+.. ..+...+.+|---.++ .+|.+.|=.|+.++++. ++ .......+
T Consensus 87 ~~~egl~~l~eG~~~qAEkl~~rnae~~---e~p~l~~l~aA~AA~q---rgd~~~an~yL~eaae~~~~~~l~v~ltra 160 (400)
T COG3071 87 ALNEGLLKLFEGDFQQAEKLLRRNAEHG---EQPVLAYLLAAEAAQQ---RGDEDRANRYLAEAAELAGDDTLAVELTRA 160 (400)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHhhhcC---cchHHHHHHHHHHHHh---cccHHHHHHHHHHHhccCCCchHHHHHHHH
Confidence 3556666688899999986666655443 3466666666655554 58999999999999998 33 44566778
Q ss_pred HHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHH----------------------HHHHHHHHHHH--------
Q 019734 145 LMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQ----------------------EEAVKLLYQAS-------- 192 (336)
Q Consensus 145 ~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~----------------------~~A~~~~~ka~-------- 192 (336)
.+....||++.|..-..++.+. .+++++...-.+|.. +++..+=+++.
T Consensus 161 rlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~ 240 (400)
T COG3071 161 RLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQAR 240 (400)
T ss_pred HHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHh
Confidence 8899999999999999998865 577777666666665 22222222221
Q ss_pred Hc------------------CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHcCCCCcccH
Q 019734 193 IA------------------GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGG-YVRAMYNTSLCYSFGEGLPLSH 253 (336)
Q Consensus 193 ~~------------------~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~~-~~~a~~~lg~~~~~~~g~~~~~ 253 (336)
+. .++.....++.-+.. .++.++|.++.+.++... |+. ...+..+. ..++.
T Consensus 241 ~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~----l~~~~~A~~~i~~~Lk~~~D~~-L~~~~~~l-----~~~d~ 310 (400)
T COG3071 241 DDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIR----LGDHDEAQEIIEDALKRQWDPR-LCRLIPRL-----RPGDP 310 (400)
T ss_pred ccccchHHHHHHHhccHHhhcChhHHHHHHHHHHH----cCChHHHHHHHHHHHHhccChh-HHHHHhhc-----CCCCc
Confidence 11 123333333434444 688999999999988764 444 33333333 13355
Q ss_pred HHHHHHHHHHHHc--CCHHHHHHHHHHhhccCCHHHHHHHHHHHHHcCcH-HHHHHHHHHHhhcC
Q 019734 254 RQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGET-AADHVKNVILQQLS 315 (336)
Q Consensus 254 ~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~~~-~a~~~~~~~~~~~~ 315 (336)
..=++..++.+.. +++.....||.+++..+.+.+|..+|+.|+...+. .....++..+..+.
T Consensus 311 ~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g 375 (400)
T COG3071 311 EPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLG 375 (400)
T ss_pred hHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcC
Confidence 5555555555553 56788899999999999999999999999987644 44445566655553
No 106
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.67 E-value=4.1e-05 Score=73.67 Aligned_cols=248 Identities=16% Similarity=0.047 Sum_probs=169.7
Q ss_pred CChhHHhhhHHHHHHHHHh---CCCCCHHHHHHHHHHHhcCCCC-------cCCHHHHHHHHHHHHHc--CCHHHHHHHH
Q 019734 77 TLPQLRAASLVCKSWNDAL---RPLREAMVLLRWGKRFKHGRGV-------RKNLDKALDSFLKGAAR--GSTLAMVDAG 144 (336)
Q Consensus 77 ~~~~~~~a~~~~~~~~~~~---~~~~~~~a~~~lg~~~~~g~g~-------~~~~~~A~~~~~~A~~~--~~~~a~~~lg 144 (336)
..+.++++.+.+.+..... ...-.+.++..+|++|-..-.. ..-..+++..+++|++. .|+.+.+.++
T Consensus 406 ~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~if~la 485 (799)
T KOG4162|consen 406 RLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVIFYLA 485 (799)
T ss_pred chhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHH
Confidence 4577888887777777632 1223678899999998763221 12267889999999987 5899999999
Q ss_pred HHHhcCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHH----HHHHHHHHHHHHc-CC-----------------HHH
Q 019734 145 LMYWEMDKKEAAISLYRQAAVL---GDPAGQFNLGISYLQ----EEAVKLLYQASIA-GH-----------------VRA 199 (336)
Q Consensus 145 ~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~Lg~~~~~----~~A~~~~~ka~~~-~~-----------------~~a 199 (336)
.-|...++.+.|..+.+++++. .++.+|..|+.++.. ..|+....-+++. ++ ++.
T Consensus 486 lq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~ 565 (799)
T KOG4162|consen 486 LQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREE 565 (799)
T ss_pred HHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHH
Confidence 9999999999999999999877 478999999999876 3444443333321 11 000
Q ss_pred --------------------------------------------------------------------------------
Q 019734 200 -------------------------------------------------------------------------------- 199 (336)
Q Consensus 200 -------------------------------------------------------------------------------- 199 (336)
T Consensus 566 ~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~ 645 (799)
T KOG4162|consen 566 ALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSL 645 (799)
T ss_pred HHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCch
Confidence
Q ss_pred -------HHHHHHHHhcCCCCccCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH--cCC
Q 019734 200 -------QYQLALCLHRGRGVDFNLQEAARWYLRAAE--GGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAAD--CGH 268 (336)
Q Consensus 200 -------~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~--~~~ 268 (336)
+...+..+.. .++.++|..++.++.. .-.+..++..|.++.. .+...+|.+.|..|+. .++
T Consensus 646 ~~~~~~lwllaa~~~~~----~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~----~~~~~EA~~af~~Al~ldP~h 717 (799)
T KOG4162|consen 646 WYLLQKLWLLAADLFLL----SGNDDEARSCLLEASKIDPLSASVYYLRGLLLEV----KGQLEEAKEAFLVALALDPDH 717 (799)
T ss_pred HHHHHHHHHHHHHHHHh----cCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHH----HHhhHHHHHHHHHHHhcCCCC
Confidence 0001111111 1222333333333321 1234456777777753 4489999999999976 477
Q ss_pred HHHHHHHHHHhhccCCHHHHHH--HHHHHHHcC--cHHHHHHHHHHHhhcChhcHHHHHHHHHHhhcCCC
Q 019734 269 GKAQLEHGLGLFTEGEMMKAVV--YLELATRAG--ETAADHVKNVILQQLSATSRDRAMLVVDSWRAMPS 334 (336)
Q Consensus 269 ~~a~~~lg~~~~~~~~~~~A~~--~~~~A~~~~--~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 334 (336)
+.+...||.++.+.|+..-|.+ .+..|++.+ +.++++.++.++..+ ++.++|-++++...++.+
T Consensus 718 v~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~--Gd~~~Aaecf~aa~qLe~ 785 (799)
T KOG4162|consen 718 VPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKL--GDSKQAAECFQAALQLEE 785 (799)
T ss_pred cHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc--cchHHHHHHHHHHHhhcc
Confidence 8899999999999998888877 999999986 678888888877664 556677777766654433
No 107
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.67 E-value=1.8e-06 Score=84.84 Aligned_cols=213 Identities=18% Similarity=0.120 Sum_probs=161.0
Q ss_pred cCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCC-CCcCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHhcCC
Q 019734 75 SFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGR-GVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMD 151 (336)
Q Consensus 75 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~-g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~ 151 (336)
++++..+.++.-.+.+...+.-+ -+..++..+..+..-. ...++.+.|+..|-++++.+ -+.++..||.+|..--
T Consensus 429 s~nd~slselswc~~~~~ek~md--va~~~~~e~~~~w~a~~~~rK~~~~al~ali~alrld~~~apaf~~LG~iYrd~~ 506 (1238)
T KOG1127|consen 429 SFNDDSLSELSWCLPRALEKMMD--VALLLECENSEFWVALGCMRKNSALALHALIRALRLDVSLAPAFAFLGQIYRDSD 506 (1238)
T ss_pred hcCchhhhHhhHHHHHhHHhhhh--HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHH
Confidence 35666776765555443333222 2333333333332211 22578999999999999985 5788999999999888
Q ss_pred CHHHHHHHHHHHHHc--CCHHHHHHHHHHHHH----HHHHHHHHHHHHcC----CHHHHHHHHHHHhcCCCCccCHHHHH
Q 019734 152 KKEAAISLYRQAAVL--GDPAGQFNLGISYLQ----EEAVKLLYQASIAG----HVRAQYQLALCLHRGRGVDFNLQEAA 221 (336)
Q Consensus 152 ~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~----~~A~~~~~ka~~~~----~~~a~~~lg~~~~~g~g~~~~~~~A~ 221 (336)
|...|..+|++|.+. +++++.-.++..|.. +.|......+.+.. -...+..+|..|.+ .++...|+
T Consensus 507 Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLe----a~n~h~aV 582 (1238)
T KOG1127|consen 507 DMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLE----AHNLHGAV 582 (1238)
T ss_pred HHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccC----ccchhhHH
Confidence 999999999999866 678888889999988 77776655555443 23456668888888 89999999
Q ss_pred HHHHHHH--HCCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcC--CHHHHHHHHHHhhccCCHHHHHHHHHHHHH
Q 019734 222 RWYLRAA--EGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCG--HGKAQLEHGLGLFTEGEMMKAVVYLELATR 297 (336)
Q Consensus 222 ~~~~~a~--~~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~ 297 (336)
.+|+.|+ ++.|..++..||.+|.. .| ++.-|++.|.+|.... +..+.|..+.+....|++.+|+..+.+.+.
T Consensus 583 ~~fQsALR~dPkD~n~W~gLGeAY~~-sG---ry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 583 CEFQSALRTDPKDYNLWLGLGEAYPE-SG---RYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHHHh-cC---ceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 9999996 46789999999999965 33 8999999999998764 456678899999999999999999988764
No 108
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.65 E-value=2.4e-06 Score=75.93 Aligned_cols=165 Identities=21% Similarity=0.225 Sum_probs=122.1
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----HHHHHHHHHHHHc----CC----HHHHHHHHHHHhcCCCCccCHH
Q 019734 151 DKKEAAISLYRQAAVLGDPAGQFNLGISYLQ----EEAVKLLYQASIA----GH----VRAQYQLALCLHRGRGVDFNLQ 218 (336)
Q Consensus 151 ~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~----~~A~~~~~ka~~~----~~----~~a~~~lg~~~~~g~g~~~~~~ 218 (336)
.++++|...|.+|.. +|.. ++|..+|.++++. ++ ..++.+.+.+|.. .+++
T Consensus 29 ~~~e~Aa~~y~~Aa~------------~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~-----~~~~ 91 (282)
T PF14938_consen 29 PDYEEAADLYEKAAN------------CFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKK-----GDPD 91 (282)
T ss_dssp HHHHHHHHHHHHHHH------------HHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH-----TTHH
T ss_pred CCHHHHHHHHHHHHH------------HHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-----hCHH
Confidence 489999999998863 2333 6777777777542 32 3567778888876 3999
Q ss_pred HHHHHHHHHHH----CCC----HHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc----CC----HHHHHHHHHHhhcc
Q 019734 219 EAARWYLRAAE----GGY----VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC----GH----GKAQLEHGLGLFTE 282 (336)
Q Consensus 219 ~A~~~~~~a~~----~~~----~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~----~~----~~a~~~lg~~~~~~ 282 (336)
+|+.+|++|++ .|. ...+..+|.+|....| ++++|+.+|++|++. +. .....+++.++...
T Consensus 92 ~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~---d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l 168 (282)
T PF14938_consen 92 EAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLG---DYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARL 168 (282)
T ss_dssp HHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT-----HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHh
Confidence 99999999975 354 5678899999965423 999999999999983 32 23447899999999
Q ss_pred CCHHHHHHHHHHHHHcC------cHHH-HHHHHHHHhhcChhcHHHHHHHHHHhhcCCCC
Q 019734 283 GEMMKAVVYLELATRAG------ETAA-DHVKNVILQQLSATSRDRAMLVVDSWRAMPSL 335 (336)
Q Consensus 283 ~~~~~A~~~~~~A~~~~------~~~a-~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 335 (336)
|++++|+..|++.+... ...+ ...+..++-+|..++...|...++.+....|+
T Consensus 169 ~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~ 228 (282)
T PF14938_consen 169 GRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPS 228 (282)
T ss_dssp T-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTT
T ss_pred CCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 99999999999998631 2233 34567788888888899999999999877663
No 109
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.64 E-value=8e-07 Score=72.60 Aligned_cols=102 Identities=15% Similarity=0.112 Sum_probs=77.9
Q ss_pred CCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--C---CHHHHHHHHHHHhcC
Q 019734 76 FTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--G---STLAMVDAGLMYWEM 150 (336)
Q Consensus 76 ~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~---~~~a~~~lg~~~~~~ 150 (336)
|-.+++..+.......++.......+.+++.+|.++.. .+++++|+.+|++++.. + .+.+++++|.++...
T Consensus 10 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~----~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~ 85 (168)
T CHL00033 10 FIDKTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQS----EGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSN 85 (168)
T ss_pred ccccccccchhhhhHhccCCchhHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHc
Confidence 34444555544444444433333457888999999987 58999999999999876 2 245899999999999
Q ss_pred CCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHH
Q 019734 151 DKKEAAISLYRQAAVL--GDPAGQFNLGISYLQ 181 (336)
Q Consensus 151 ~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~ 181 (336)
|++++|+.+|++++.. ....++.++|.++..
T Consensus 86 g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~ 118 (168)
T CHL00033 86 GEHTKALEYYFQALERNPFLPQALNNMAVICHY 118 (168)
T ss_pred CCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 9999999999999865 667888888888874
No 110
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.64 E-value=2.1e-06 Score=72.72 Aligned_cols=152 Identities=20% Similarity=0.124 Sum_probs=113.3
Q ss_pred CHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHH
Q 019734 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNL 175 (336)
Q Consensus 100 ~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~L 175 (336)
+..+ +++...+.. .++-+.+..+..+++.. .+.+....+|......|++.+|+..+++++.. .|.+++..+
T Consensus 66 d~~i-~~~a~a~~~----~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~l 140 (257)
T COG5010 66 DLSI-AKLATALYL----RGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLL 140 (257)
T ss_pred hHHH-HHHHHHHHh----cccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHH
Confidence 5555 666666555 35666666666665543 34556666888888888888888888888755 788888888
Q ss_pred HHHHHH----HHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCC
Q 019734 176 GISYLQ----EEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGE 247 (336)
Q Consensus 176 g~~~~~----~~A~~~~~ka~~~--~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~ 247 (336)
|.+|.+ +.|..-|.++++. +.+....|||..|.- .+|+..|..++..+... .+...-.+|+.+.- ..
T Consensus 141 gaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L----~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~-~~ 215 (257)
T COG5010 141 GAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLL----RGDLEDAETLLLPAYLSPAADSRVRQNLALVVG-LQ 215 (257)
T ss_pred HHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHH----cCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHh-hc
Confidence 888888 8888888888775 688888889888876 78899999999888544 46777788887773 23
Q ss_pred CCcccHHHHHHHHHHHH
Q 019734 248 GLPLSHRQARKWMKRAA 264 (336)
Q Consensus 248 g~~~~~~~A~~~~~~a~ 264 (336)
+++++|.....+-+
T Consensus 216 ---g~~~~A~~i~~~e~ 229 (257)
T COG5010 216 ---GDFREAEDIAVQEL 229 (257)
T ss_pred ---CChHHHHhhccccc
Confidence 38888877765543
No 111
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.60 E-value=2.7e-06 Score=69.75 Aligned_cols=80 Identities=21% Similarity=0.364 Sum_probs=67.2
Q ss_pred CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHH
Q 019734 98 LREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG-----STLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPA 170 (336)
Q Consensus 98 ~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~~-----~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~ 170 (336)
...+.+++.+|..+.. .+++++|+.+|++++... ...+++.+|.++...|++++|+.+|.+++.. .++.
T Consensus 32 ~~~a~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 107 (172)
T PRK02603 32 AKEAFVYYRDGMSAQA----DGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPS 107 (172)
T ss_pred hhhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH
Confidence 4577889999999988 589999999999998752 2468999999999999999999999999865 5677
Q ss_pred HHHHHHHHHHH
Q 019734 171 GQFNLGISYLQ 181 (336)
Q Consensus 171 a~~~Lg~~~~~ 181 (336)
++..+|.++..
T Consensus 108 ~~~~lg~~~~~ 118 (172)
T PRK02603 108 ALNNIAVIYHK 118 (172)
T ss_pred HHHHHHHHHHH
Confidence 77777777764
No 112
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.57 E-value=6e-05 Score=71.30 Aligned_cols=88 Identities=14% Similarity=0.049 Sum_probs=68.4
Q ss_pred CCCCChHHHHHHHHhcCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCH
Q 019734 60 DFASLPFDVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GST 137 (336)
Q Consensus 60 ~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~ 137 (336)
.++..++.+..++..+...|+.++|....+.-++.. ......|+.+|+++.. .+++++|+++|+.|+.. +|.
T Consensus 36 k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d--~~S~vCwHv~gl~~R~----dK~Y~eaiKcy~nAl~~~~dN~ 109 (700)
T KOG1156|consen 36 KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND--LKSHVCWHVLGLLQRS----DKKYDEAIKCYRNALKIEKDNL 109 (700)
T ss_pred hCCccchhHHhccchhhcccchHHHHHHHHHHhccC--cccchhHHHHHHHHhh----hhhHHHHHHHHHHHHhcCCCcH
Confidence 345556677778888888999999988888777754 3478899999999998 69999999999999986 467
Q ss_pred HHHHHHHHHHhcCCCH
Q 019734 138 LAMVDAGLMYWEMDKK 153 (336)
Q Consensus 138 ~a~~~lg~~~~~~~~~ 153 (336)
..+..|+.+..+.+++
T Consensus 110 qilrDlslLQ~QmRd~ 125 (700)
T KOG1156|consen 110 QILRDLSLLQIQMRDY 125 (700)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 7766666655554433
No 113
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.57 E-value=2.4e-07 Score=63.58 Aligned_cols=63 Identities=22% Similarity=0.337 Sum_probs=57.8
Q ss_pred CHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHc
Q 019734 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMD-KKEAAISLYRQAAVL 166 (336)
Q Consensus 100 ~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~-~~~~A~~~~~~a~~~ 166 (336)
++..++.+|.++.. .+++++|+.+|+++++. .++.+++++|.+|...| ++++|+..|+++++.
T Consensus 2 ~a~~~~~~g~~~~~----~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQ----QGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHH----TTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 67889999999999 69999999999999987 57899999999999999 799999999999865
No 114
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.55 E-value=3.4e-05 Score=79.74 Aligned_cols=248 Identities=13% Similarity=0.021 Sum_probs=153.2
Q ss_pred HHhcCCChhHHhhhHHHHHHHHHhCCCC---CHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc----CC----HHHH
Q 019734 72 IAASFTLPQLRAASLVCKSWNDALRPLR---EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR----GS----TLAM 140 (336)
Q Consensus 72 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~----~~----~~a~ 140 (336)
+..++..|++.+|...+...++..+... ...+...+|.++.. .+++++|..+++++... ++ ..+.
T Consensus 459 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~----~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~ 534 (903)
T PRK04841 459 AQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHC----KGELARALAMMQQTEQMARQHDVYHYALWSL 534 (903)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHhhhcchHHHHHHH
Confidence 3445678899999888888776543321 13456678888766 58999999999998854 22 2456
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHc----CC------HHHHHHHHHHHHH----HHHHHHHHHHHHc----C---CHHH
Q 019734 141 VDAGLMYWEMDKKEAAISLYRQAAVL----GD------PAGQFNLGISYLQ----EEAVKLLYQASIA----G---HVRA 199 (336)
Q Consensus 141 ~~lg~~~~~~~~~~~A~~~~~~a~~~----~~------~~a~~~Lg~~~~~----~~A~~~~~ka~~~----~---~~~a 199 (336)
..+|.++...|++++|..++.++++. +. ......+|.++.. ++|..+++++++. + ...+
T Consensus 535 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~ 614 (903)
T PRK04841 535 LQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQC 614 (903)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHH
Confidence 78899999999999999999998753 11 1234456777766 8999999988653 1 2445
Q ss_pred HHHHHHHHhcCCCCccCHHHHHHHHHHHHHC----CC-HHHHH---HHHHHHHcCCCCcccHHHHHHHHHHHHHcC--CH
Q 019734 200 QYQLALCLHRGRGVDFNLQEAARWYLRAAEG----GY-VRAMY---NTSLCYSFGEGLPLSHRQARKWMKRAADCG--HG 269 (336)
Q Consensus 200 ~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~----~~-~~a~~---~lg~~~~~~~g~~~~~~~A~~~~~~a~~~~--~~ 269 (336)
+..+|.++.. .++++.|...+.++... +. ..... .+...+....| +.++|..|+....... ..
T Consensus 615 ~~~la~~~~~----~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g---~~~~A~~~l~~~~~~~~~~~ 687 (903)
T PRK04841 615 LAMLAKISLA----RGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTG---DKEAAANWLRQAPKPEFANN 687 (903)
T ss_pred HHHHHHHHHH----cCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCC---CHHHHHHHHHhcCCCCCccc
Confidence 6667888776 78999999999888432 11 11111 11111111122 6667777765544321 11
Q ss_pred ----HHHHHHHHHhhccCCHHHHHHHHHHHHHc----Cc--HHHHHHHHHHHhhcChhcHHHHHHHHHHhh
Q 019734 270 ----KAQLEHGLGLFTEGEMMKAVVYLELATRA----GE--TAADHVKNVILQQLSATSRDRAMLVVDSWR 330 (336)
Q Consensus 270 ----~a~~~lg~~~~~~~~~~~A~~~~~~A~~~----~~--~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~ 330 (336)
.....++.++...|++++|...+++++.. +. ..+...+.........++.++|.....+..
T Consensus 688 ~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al 758 (903)
T PRK04841 688 HFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEAL 758 (903)
T ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 11345666777777777777777777653 21 122222223333334455555655555544
No 115
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.55 E-value=2.2e-06 Score=78.67 Aligned_cols=100 Identities=13% Similarity=0.089 Sum_probs=87.0
Q ss_pred HHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHH
Q 019734 105 LRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYL 180 (336)
Q Consensus 105 ~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~ 180 (336)
...|..++. .+++++|+.+|++|+.. +++.+++++|.+|...|++++|+..++++++. +++.+++.+|.++.
T Consensus 6 ~~~a~~a~~----~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~ 81 (356)
T PLN03088 6 EDKAKEAFV----DDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACM 81 (356)
T ss_pred HHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH
Confidence 344555555 58999999999999987 58999999999999999999999999999865 78999999999998
Q ss_pred H----HHHHHHHHHHHHc--CCHHHHHHHHHHHh
Q 019734 181 Q----EEAVKLLYQASIA--GHVRAQYQLALCLH 208 (336)
Q Consensus 181 ~----~~A~~~~~ka~~~--~~~~a~~~lg~~~~ 208 (336)
. ++|+.+|+++++. +++.+...++.|..
T Consensus 82 ~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~ 115 (356)
T PLN03088 82 KLEEYQTAKAALEKGASLAPGDSRFTKLIKECDE 115 (356)
T ss_pred HhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 8 9999999999876 58888888888844
No 116
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.48 E-value=4.9e-06 Score=66.16 Aligned_cols=124 Identities=15% Similarity=0.086 Sum_probs=73.9
Q ss_pred HHHHHhcCCChhHHhhhHHHHHHHHHhCCCC-CHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcC-C----HHHHHH
Q 019734 69 LNKIAASFTLPQLRAASLVCKSWNDALRPLR-EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG-S----TLAMVD 142 (336)
Q Consensus 69 l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~~-~----~~a~~~ 142 (336)
...+...+..++...+...+..+.+..+..+ -..+.+.+|.++.. .+++++|+..|++++... + +.+.+.
T Consensus 15 y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~----~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~ 90 (145)
T PF09976_consen 15 YEQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYE----QGDYDEAKAALEKALANAPDPELKPLARLR 90 (145)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhhCCCHHHHHHHHHH
Confidence 3444444556666666666666666655531 24566667777766 467777777777777653 2 346666
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCccCHHHHHH
Q 019734 143 AGLMYWEMDKKEAAISLYRQAAVLGDPAGQFNLGISYLQEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAAR 222 (336)
Q Consensus 143 lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~~~A~~~~~ka~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~ 222 (336)
|+.++...|++++|+..+....... -.+.+...+|.+|.. .+++++|+.
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~~~~~---------------------------~~~~~~~~~Gdi~~~----~g~~~~A~~ 139 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQIPDEA---------------------------FKALAAELLGDIYLA----QGDYDEARA 139 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhccCcc---------------------------hHHHHHHHHHHHHHH----CCCHHHHHH
Confidence 7777777777777777765532211 122334445566555 667777777
Q ss_pred HHHHH
Q 019734 223 WYLRA 227 (336)
Q Consensus 223 ~~~~a 227 (336)
.|++|
T Consensus 140 ~y~~A 144 (145)
T PF09976_consen 140 AYQKA 144 (145)
T ss_pred HHHHh
Confidence 77665
No 117
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.45 E-value=7.9e-07 Score=63.63 Aligned_cols=81 Identities=11% Similarity=0.028 Sum_probs=60.7
Q ss_pred ChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCHHH
Q 019734 78 LPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEA 155 (336)
Q Consensus 78 ~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~ 155 (336)
.++++.|+..+.++++..+...+...++.||.+|.. .+++++|+.++++ ... .+....+.+|.++...|++++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~----~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~e 76 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQ----QGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEE 76 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHH----TTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHH----CCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHH
Confidence 467888888888888887742256677778888888 5888888888887 332 456777888888888888888
Q ss_pred HHHHHHHH
Q 019734 156 AISLYRQA 163 (336)
Q Consensus 156 A~~~~~~a 163 (336)
|+..|.++
T Consensus 77 Ai~~l~~~ 84 (84)
T PF12895_consen 77 AIKALEKA 84 (84)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhcC
Confidence 88888765
No 118
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.45 E-value=7.1e-06 Score=78.35 Aligned_cols=204 Identities=16% Similarity=0.023 Sum_probs=155.3
Q ss_pred HHHHHhcCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc-CCHHHHHHHHHHH
Q 019734 69 LNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR-GSTLAMVDAGLMY 147 (336)
Q Consensus 69 l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~-~~~~a~~~lg~~~ 147 (336)
...+-..+..|=..+|..++.+.. .+-..-.||.. .|+..+|.....+-++. .++..+..||.+.
T Consensus 402 ~~laell~slGitksAl~I~Erle----------mw~~vi~CY~~----lg~~~kaeei~~q~lek~~d~~lyc~LGDv~ 467 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERLE----------MWDPVILCYLL----LGQHGKAEEINRQELEKDPDPRLYCLLGDVL 467 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhHH----------HHHHHHHHHHH----hcccchHHHHHHHHhcCCCcchhHHHhhhhc
Confidence 333444456666677765555433 33444566666 46888898888888874 5777778888887
Q ss_pred hcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----HHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHH
Q 019734 148 WEMDKKEAAISLYRQAAVLGDPAGQFNLGISYLQ----EEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAA 221 (336)
Q Consensus 148 ~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~----~~A~~~~~ka~~~--~~~~a~~~lg~~~~~g~g~~~~~~~A~ 221 (336)
...-=+++|.++.+.- +..|...+|..... .++..+|+.+++. .....||.+|.+..+ ..++..|.
T Consensus 468 ~d~s~yEkawElsn~~----sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALq----lek~q~av 539 (777)
T KOG1128|consen 468 HDPSLYEKAWELSNYI----SARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQ----LEKEQAAV 539 (777)
T ss_pred cChHHHHHHHHHhhhh----hHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHH----HhhhHHHH
Confidence 6665556665555443 23466777766655 8999999999776 578999999999998 89999999
Q ss_pred HHHHHHH--HCCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhccCCHHHHHHHHHHHHH
Q 019734 222 RWYLRAA--EGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATR 297 (336)
Q Consensus 222 ~~~~~a~--~~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~ 297 (336)
..|.+++ ++++..++.|++..|... +...+|...+++|++- +++..+.|.-.+-.+.|++++|+..|++-+.
T Consensus 540 ~aF~rcvtL~Pd~~eaWnNls~ayi~~----~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 540 KAFHRCVTLEPDNAEAWNNLSTAYIRL----KKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHHHHHhhcCCCchhhhhhhhHHHHHH----hhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 9999985 568999999999999863 4889999999999874 6677778888888899999999999999876
Q ss_pred c
Q 019734 298 A 298 (336)
Q Consensus 298 ~ 298 (336)
.
T Consensus 616 ~ 616 (777)
T KOG1128|consen 616 L 616 (777)
T ss_pred h
Confidence 4
No 119
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.44 E-value=8.7e-06 Score=66.75 Aligned_cols=81 Identities=19% Similarity=0.187 Sum_probs=56.7
Q ss_pred CHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CC
Q 019734 196 HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGG-----YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GH 268 (336)
Q Consensus 196 ~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~~-----~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~--~~ 268 (336)
...+++++|..+.. .+++++|+.+|++++... ...+++++|.++.... ++++|+.+|++++.. .+
T Consensus 34 ~a~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g----~~~~A~~~~~~al~~~p~~ 105 (172)
T PRK02603 34 EAFVYYRDGMSAQA----DGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNG----EHDKALEYYHQALELNPKQ 105 (172)
T ss_pred hHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHhCccc
Confidence 45567777777776 677888888888776432 2457778888876532 788888888888764 45
Q ss_pred HHHHHHHHHHhhccCC
Q 019734 269 GKAQLEHGLGLFTEGE 284 (336)
Q Consensus 269 ~~a~~~lg~~~~~~~~ 284 (336)
..++..+|.++...|+
T Consensus 106 ~~~~~~lg~~~~~~g~ 121 (172)
T PRK02603 106 PSALNNIAVIYHKRGE 121 (172)
T ss_pred HHHHHHHHHHHHHcCC
Confidence 6667777777777665
No 120
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.42 E-value=9.2e-05 Score=64.13 Aligned_cols=53 Identities=6% Similarity=-0.155 Sum_probs=29.4
Q ss_pred HHHHHHHcCCCCcccHHHHHHHHHHHHHc-----CCHHHHHHHHHHhhccCCHHHHHHHHHH
Q 019734 238 NTSLCYSFGEGLPLSHRQARKWMKRAADC-----GHGKAQLEHGLGLFTEGEMMKAVVYLEL 294 (336)
Q Consensus 238 ~lg~~~~~~~g~~~~~~~A~~~~~~a~~~-----~~~~a~~~lg~~~~~~~~~~~A~~~~~~ 294 (336)
.+|..|.+.. .+.-|+.-++..++. ...++.+.++..|...|..++|..+...
T Consensus 180 ~ia~~Y~~~~----~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~ 237 (243)
T PRK10866 180 SVAEYYTKRG----AYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKI 237 (243)
T ss_pred HHHHHHHHcC----chHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 4455554422 566666666666652 2245556666666666666666665443
No 121
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.41 E-value=1.3e-06 Score=77.60 Aligned_cols=135 Identities=10% Similarity=-0.091 Sum_probs=69.7
Q ss_pred CHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcC-CCCcccHHHHHHHHHHHHHc--CCHHHH
Q 019734 196 HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFG-EGLPLSHRQARKWMKRAADC--GHGKAQ 272 (336)
Q Consensus 196 ~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~-~g~~~~~~~A~~~~~~a~~~--~~~~a~ 272 (336)
..+.....-.+|.. .++++.|.+.++..-+.++-.....|+..|..- .| ...+.+|...|+...+. ..+...
T Consensus 130 ~lE~~al~Vqi~L~----~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g-~e~~~~A~y~f~El~~~~~~t~~~l 204 (290)
T PF04733_consen 130 SLELLALAVQILLK----MNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATG-GEKYQDAFYIFEELSDKFGSTPKLL 204 (290)
T ss_dssp CHHHHHHHHHHHHH----TT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHT-TTCCCHHHHHHHHHHCCS--SHHHH
T ss_pred cccHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhccCCCHHHH
Confidence 34444444444444 566666776666665544444444444433221 11 13566777777776554 234445
Q ss_pred HHHHHHhhccCCHHHHHHHHHHHHHcCc--HHHHHHHHHHHhhcChhcHHHHHHHHHHhhcCCCCC
Q 019734 273 LEHGLGLFTEGEMMKAVVYLELATRAGE--TAADHVKNVILQQLSATSRDRAMLVVDSWRAMPSLH 336 (336)
Q Consensus 273 ~~lg~~~~~~~~~~~A~~~~~~A~~~~~--~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 336 (336)
+.++.++..+|++++|...++.|++.++ ++...++..+.. ..+...+.+.+...++++.+|.|
T Consensus 205 ng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~-~~gk~~~~~~~~l~qL~~~~p~h 269 (290)
T PF04733_consen 205 NGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSL-HLGKPTEAAERYLSQLKQSNPNH 269 (290)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHH-HTT-TCHHHHHHHHHCHHHTTTS
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHH-HhCCChhHHHHHHHHHHHhCCCC
Confidence 5666777777777777777777765543 333333322222 23333345556666677667666
No 122
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.40 E-value=1.6e-06 Score=59.43 Aligned_cols=64 Identities=20% Similarity=0.269 Sum_probs=46.7
Q ss_pred CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhccC-CHHHHHHHHHHHHHcC
Q 019734 232 YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEG-EMMKAVVYLELATRAG 299 (336)
Q Consensus 232 ~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~-~~~~A~~~~~~A~~~~ 299 (336)
++..+..+|.++.... ++++|+.+|+++++. .++.+++++|.+|...| ++++|+..|++++...
T Consensus 2 ~a~~~~~~g~~~~~~~----~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~ 68 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQG----DYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLD 68 (69)
T ss_dssp SHHHHHHHHHHHHHTT----HHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcC
Confidence 4566777777776533 788888888888774 45667788888888887 6888888888877654
No 123
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.39 E-value=7.9e-06 Score=62.07 Aligned_cols=96 Identities=13% Similarity=0.106 Sum_probs=63.4
Q ss_pred HHHHHHHhcCCChhHHhhhHHHHHHHHHhCCC-CCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--C---CHHHH
Q 019734 67 DVLNKIAASFTLPQLRAASLVCKSWNDALRPL-REAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--G---STLAM 140 (336)
Q Consensus 67 ~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~---~~~a~ 140 (336)
..+..+...+..|++.+|...+..+.+..++. ..+.+++.+|.++.. .+++++|+.+|++++.. + .+.++
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~~ 79 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYA----QGKYADAAKAFLAVVKKYPKSPKAPDAL 79 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHh----hccHHHHHHHHHHHHHHCCCCCcccHHH
Confidence 34555556666777777777777777665542 225567777777777 46777777777777654 2 24567
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHc
Q 019734 141 VDAGLMYWEMDKKEAAISLYRQAAVL 166 (336)
Q Consensus 141 ~~lg~~~~~~~~~~~A~~~~~~a~~~ 166 (336)
+.+|.++...+++++|+.+|.++++.
T Consensus 80 ~~~~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 80 LKLGMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 77777777777777777777777654
No 124
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.38 E-value=1.2e-05 Score=61.41 Aligned_cols=88 Identities=16% Similarity=0.196 Sum_probs=65.6
Q ss_pred HHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcCC-----HHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--C---CHHH
Q 019734 102 MVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGS-----TLAMVDAGLMYWEMDKKEAAISLYRQAAVL--G---DPAG 171 (336)
Q Consensus 102 ~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~~~-----~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~---~~~a 171 (336)
.++|.+|.++.. .|+.++|+.+|++|+..|- ..++..+|..+...|++++|+..+++++.. + +...
T Consensus 2 ~~~~~~A~a~d~----~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l 77 (120)
T PF12688_consen 2 RALYELAWAHDS----LGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAAL 77 (120)
T ss_pred chHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHH
Confidence 467888888877 6889999999999988642 457788999999999999999999988754 3 4455
Q ss_pred HHHHHHHHHH----HHHHHHHHHHHH
Q 019734 172 QFNLGISYLQ----EEAVKLLYQASI 193 (336)
Q Consensus 172 ~~~Lg~~~~~----~~A~~~~~ka~~ 193 (336)
...++.++.. ++|+.++..++.
T Consensus 78 ~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 78 RVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5556666655 666666666543
No 125
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.37 E-value=8.7e-06 Score=61.83 Aligned_cols=97 Identities=19% Similarity=0.081 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHCC--C---HHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--C--
Q 019734 197 VRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGG--Y---VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--G-- 267 (336)
Q Consensus 197 ~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~~--~---~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~--~-- 267 (336)
++.++.+|..+.. .+++++|+..|++++... + ..+++.+|.++.... ++++|+.+|++++.. +
T Consensus 2 ~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~A~~~~~~~~~~~p~~~ 73 (119)
T TIGR02795 2 EEAYYDAALLVLK----AGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQG----KYADAAKAFLAVVKKYPKSP 73 (119)
T ss_pred cHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhc----cHHHHHHHHHHHHHHCCCCC
Confidence 4678889999888 899999999999997642 2 578999999997633 999999999999874 2
Q ss_pred -CHHHHHHHHHHhhccCCHHHHHHHHHHHHHcCcH
Q 019734 268 -HGKAQLEHGLGLFTEGEMMKAVVYLELATRAGET 301 (336)
Q Consensus 268 -~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~~~ 301 (336)
.+.+.+.+|.++...|++++|..+|+++++..+.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~ 108 (119)
T TIGR02795 74 KAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPG 108 (119)
T ss_pred cccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcC
Confidence 2567899999999999999999999999987544
No 126
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.37 E-value=1.8e-05 Score=64.55 Aligned_cols=92 Identities=16% Similarity=0.113 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHC--C---CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCH
Q 019734 197 VRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--G---YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHG 269 (336)
Q Consensus 197 ~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~--~---~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~--~~~ 269 (336)
...++++|.++.. .+++++|+.+|++++.. + .+.+++++|.+|... +++++|+..|++++.. ...
T Consensus 35 a~~~~~~g~~~~~----~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~----g~~~eA~~~~~~Al~~~~~~~ 106 (168)
T CHL00033 35 AFTYYRDGMSAQS----EGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSN----GEHTKALEYYFQALERNPFLP 106 (168)
T ss_pred HHHHHHHHHHHHH----cCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCcCcH
Confidence 4556777777776 67788888888888644 2 234778888888653 3788888888888764 445
Q ss_pred HHHHHHHHHhh-------ccCCHHHHHHHHHHHH
Q 019734 270 KAQLEHGLGLF-------TEGEMMKAVVYLELAT 296 (336)
Q Consensus 270 ~a~~~lg~~~~-------~~~~~~~A~~~~~~A~ 296 (336)
..+.++|.++. ..|+++.|..++++|+
T Consensus 107 ~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~ 140 (168)
T CHL00033 107 QALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAA 140 (168)
T ss_pred HHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHH
Confidence 66677777777 6777775555555443
No 127
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.36 E-value=2.7e-05 Score=71.49 Aligned_cols=142 Identities=17% Similarity=0.139 Sum_probs=113.8
Q ss_pred HHHHHHhcCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHH
Q 019734 68 VLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGL 145 (336)
Q Consensus 68 ~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~ 145 (336)
..-.+...+..+++++|......+++..|+ ++-.+-..|.++.. .++.++|.+.+++++.+ +.+....++|.
T Consensus 309 ~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~--N~~~~~~~~~i~~~----~nk~~~A~e~~~kal~l~P~~~~l~~~~a~ 382 (484)
T COG4783 309 QYGRALQTYLAGQYDEALKLLQPLIAAQPD--NPYYLELAGDILLE----ANKAKEAIERLKKALALDPNSPLLQLNLAQ 382 (484)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHhCCC--CHHHHHHHHHHHHH----cCChHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence 344556667888889999888888888886 88888889999998 68999999999999988 45778899999
Q ss_pred HHhcCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCccCHHHHHHH
Q 019734 146 MYWEMDKKEAAISLYRQAAV--LGDPAGQFNLGISYLQEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARW 223 (336)
Q Consensus 146 ~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~Lg~~~~~~~A~~~~~ka~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~ 223 (336)
.|..+|++.+|+..++.... ++++..|..|+..|.. ..+..++....+..|.. .+++++|+..
T Consensus 383 all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~-----------~g~~~~a~~A~AE~~~~----~G~~~~A~~~ 447 (484)
T COG4783 383 ALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAE-----------LGNRAEALLARAEGYAL----AGRLEQAIIF 447 (484)
T ss_pred HHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHH-----------hCchHHHHHHHHHHHHh----CCCHHHHHHH
Confidence 99999999999999999874 4789999998888853 12234555556666665 6778888888
Q ss_pred HHHHHHC
Q 019734 224 YLRAAEG 230 (336)
Q Consensus 224 ~~~a~~~ 230 (336)
+.++-+.
T Consensus 448 l~~A~~~ 454 (484)
T COG4783 448 LMRASQQ 454 (484)
T ss_pred HHHHHHh
Confidence 8777543
No 128
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.34 E-value=9.3e-05 Score=76.56 Aligned_cols=216 Identities=13% Similarity=0.034 Sum_probs=150.5
Q ss_pred HHhcCCChhHHhhhHHHHHHHHHhCCCCC----HHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc----CC------H
Q 019734 72 IAASFTLPQLRAASLVCKSWNDALRPLRE----AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR----GS------T 137 (336)
Q Consensus 72 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~----~~------~ 137 (336)
+..+...|++++|...+..........+. ..++..+|.++.. .+++++|..+++++... +. .
T Consensus 498 g~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~----~G~~~~A~~~~~~al~~~~~~~~~~~~~~~ 573 (903)
T PRK04841 498 GEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA----QGFLQAAYETQEKAFQLIEEQHLEQLPMHE 573 (903)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHHhccccccHHH
Confidence 33446789999998888877766554333 3456778888877 58999999999998764 11 2
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHc----C---CHHHHHHHHHHHHH----HHHHHHHHHHHHc----CC-HHHHH
Q 019734 138 LAMVDAGLMYWEMDKKEAAISLYRQAAVL----G---DPAGQFNLGISYLQ----EEAVKLLYQASIA----GH-VRAQY 201 (336)
Q Consensus 138 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----~---~~~a~~~Lg~~~~~----~~A~~~~~ka~~~----~~-~~a~~ 201 (336)
.....+|.+++..|++++|...+.+++.. + ...++..+|.++.. +.|...+.++... +. .....
T Consensus 574 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~ 653 (903)
T PRK04841 574 FLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIA 653 (903)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhh
Confidence 23557888999999999999999998753 1 23455567777766 8898988888543 11 11111
Q ss_pred H---HH-HHHhcCCCCccCHHHHHHHHHHHHHCC--CH----HHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc----C
Q 019734 202 Q---LA-LCLHRGRGVDFNLQEAARWYLRAAEGG--YV----RAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC----G 267 (336)
Q Consensus 202 ~---lg-~~~~~g~g~~~~~~~A~~~~~~a~~~~--~~----~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~----~ 267 (336)
. +. ..+.. .++.+.|..++....... .. .....++.++.. .| ++++|...+++++.. +
T Consensus 654 ~~~~~~~~~~~~----~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~-~g---~~~~A~~~l~~al~~~~~~g 725 (903)
T PRK04841 654 NADKVRLIYWQM----TGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQIL-LG---QFDEAEIILEELNENARSLR 725 (903)
T ss_pred HHHHHHHHHHHH----CCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHH-cC---CHHHHHHHHHHHHHHHHHhC
Confidence 1 11 22222 578889999987754322 11 113467777754 23 899999999999873 2
Q ss_pred C----HHHHHHHHHHhhccCCHHHHHHHHHHHHHcC
Q 019734 268 H----GKAQLEHGLGLFTEGEMMKAVVYLELATRAG 299 (336)
Q Consensus 268 ~----~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~ 299 (336)
. ..++..+|.++...|+.++|..++.+|++..
T Consensus 726 ~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 726 LMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred chHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 2 3466889999999999999999999999854
No 129
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.34 E-value=6.9e-06 Score=58.58 Aligned_cols=93 Identities=23% Similarity=0.173 Sum_probs=75.2
Q ss_pred HHHHHHHHHhcCCCCccCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHH
Q 019734 199 AQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLE 274 (336)
Q Consensus 199 a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~ 274 (336)
+++++|.++.. .+++.+|+.+++++++. .+..+++.+|.++... +++++|+.++++++.. .+...++.
T Consensus 2 ~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~ 73 (100)
T cd00189 2 ALLNLGNLYYK----LGDYDEALEYYEKALELDPDNADAYYNLAAAYYKL----GKYEEALEDYEKALELDPDNAKAYYN 73 (100)
T ss_pred HHHHHHHHHHH----HhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhCCCcchhHHHH
Confidence 46778888877 78899999999988764 4567888899988653 3889999999998875 44567789
Q ss_pred HHHHhhccCCHHHHHHHHHHHHHcC
Q 019734 275 HGLGLFTEGEMMKAVVYLELATRAG 299 (336)
Q Consensus 275 lg~~~~~~~~~~~A~~~~~~A~~~~ 299 (336)
+|.++...|++++|..++.++++..
T Consensus 74 ~~~~~~~~~~~~~a~~~~~~~~~~~ 98 (100)
T cd00189 74 LGLAYYKLGKYEEALEAYEKALELD 98 (100)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHccC
Confidence 9999999999999999998887654
No 130
>PRK15331 chaperone protein SicA; Provisional
Probab=98.33 E-value=7.7e-06 Score=65.04 Aligned_cols=92 Identities=11% Similarity=-0.030 Sum_probs=64.4
Q ss_pred HHHHHhcCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHH
Q 019734 69 LNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLM 146 (336)
Q Consensus 69 l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~ 146 (336)
...+...+..|++.+|..+++-+.--.+. +++.++.||.++.. .+++++|+..|..|... +++...+..|.+
T Consensus 41 Y~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~--n~~Y~~GLaa~~Q~----~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC 114 (165)
T PRK15331 41 YAHAYEFYNQGRLDEAETFFRFLCIYDFY--NPDYTMGLAAVCQL----KKQFQKACDLYAVAFTLLKNDYRPVFFTGQC 114 (165)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcC--cHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHcccCCCCccchHHHH
Confidence 34445567777777776666655554433 67777777777777 57777777777777655 577777777777
Q ss_pred HhcCCCHHHHHHHHHHHHHc
Q 019734 147 YWEMDKKEAAISLYRQAAVL 166 (336)
Q Consensus 147 ~~~~~~~~~A~~~~~~a~~~ 166 (336)
|...|+.+.|+..|..+++.
T Consensus 115 ~l~l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 115 QLLMRKAAKARQCFELVNER 134 (165)
T ss_pred HHHhCCHHHHHHHHHHHHhC
Confidence 77777777777777777764
No 131
>PRK11906 transcriptional regulator; Provisional
Probab=98.32 E-value=9.1e-05 Score=68.31 Aligned_cols=129 Identities=11% Similarity=-0.042 Sum_probs=73.5
Q ss_pred HHHHHHHHHhcCCCCcCCHHHHHHHHHHHH---Hc--CCHHHHHHHHHHHhcC---------CCHHHHHHHHHHHHHc--
Q 019734 103 VLLRWGKRFKHGRGVRKNLDKALDSFLKGA---AR--GSTLAMVDAGLMYWEM---------DKKEAAISLYRQAAVL-- 166 (336)
Q Consensus 103 a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~---~~--~~~~a~~~lg~~~~~~---------~~~~~A~~~~~~a~~~-- 166 (336)
..|..|..... .+.+.+.+.|..+|++|+ .. +.+.++..++.+++.. .+..+|+...++|++.
T Consensus 257 d~ylrg~~~~~-~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~ 335 (458)
T PRK11906 257 DEMLAGKKELY-DFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITT 335 (458)
T ss_pred HHHHHHHHHhh-ccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCC
Confidence 34666766655 456778889999999998 44 3577777777777643 2344555555555544
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHH--HCCCHHHHHHHHHHHH
Q 019734 167 GDPAGQFNLGISYLQEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAA--EGGYVRAMYNTSLCYS 244 (336)
Q Consensus 167 ~~~~a~~~Lg~~~~~~~A~~~~~ka~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~--~~~~~~a~~~lg~~~~ 244 (336)
+|+.+++.+|.++.. .++++.|..+|++|. .++.+.+++..|.+..
T Consensus 336 ~Da~a~~~~g~~~~~--------------------------------~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~ 383 (458)
T PRK11906 336 VDGKILAIMGLITGL--------------------------------SGQAKVSHILFEQAKIHSTDIASLYYYRALVHF 383 (458)
T ss_pred CCHHHHHHHHHHHHh--------------------------------hcchhhHHHHHHHHhhcCCccHHHHHHHHHHHH
Confidence 455555555554433 344555555555553 2344555555555443
Q ss_pred cCCCCcccHHHHHHHHHHHHHcCC
Q 019734 245 FGEGLPLSHRQARKWMKRAADCGH 268 (336)
Q Consensus 245 ~~~g~~~~~~~A~~~~~~a~~~~~ 268 (336)
. .++.++|..++++++...+
T Consensus 384 ~----~G~~~~a~~~i~~alrLsP 403 (458)
T PRK11906 384 H----NEKIEEARICIDKSLQLEP 403 (458)
T ss_pred H----cCCHHHHHHHHHHHhccCc
Confidence 2 1155555555555555433
No 132
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.31 E-value=0.00027 Score=59.81 Aligned_cols=154 Identities=18% Similarity=0.025 Sum_probs=95.4
Q ss_pred CCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHH--HH-HHHHHHHHH---HHHHHHHHH
Q 019734 119 KNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPA--GQ-FNLGISYLQ---EEAVKLLYQ 190 (336)
Q Consensus 119 ~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~--a~-~~Lg~~~~~---~~A~~~~~k 190 (336)
+..+-|..++.+.-.. ++....-.-|..+...|.+++|+++|...++.+... .+ -.++.+-.. -+|++.+..
T Consensus 66 ~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~ 145 (289)
T KOG3060|consen 66 GRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNE 145 (289)
T ss_pred cchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 4556666666654433 455555555666666677777777777766543221 11 223333333 555555555
Q ss_pred HHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHH--HCCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc
Q 019734 191 ASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAA--EGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC 266 (336)
Q Consensus 191 a~~~--~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~--~~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~ 266 (336)
-++. ++.+||..|+.+|.. .+++.+|.-+|+..+ ++-++..+..+|.++....| ..+..-|..+|.++++.
T Consensus 146 YL~~F~~D~EAW~eLaeiY~~----~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg-~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 146 YLDKFMNDQEAWHELAEIYLS----EGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGG-AENLELARKYYERALKL 220 (289)
T ss_pred HHHHhcCcHHHHHHHHHHHHh----HhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHh
Confidence 5553 678888888888887 788888888888763 45566667777777654433 66788888888888876
Q ss_pred CCHHHHHHHHH
Q 019734 267 GHGKAQLEHGL 277 (336)
Q Consensus 267 ~~~~a~~~lg~ 277 (336)
......-.+|.
T Consensus 221 ~~~~~ral~GI 231 (289)
T KOG3060|consen 221 NPKNLRALFGI 231 (289)
T ss_pred ChHhHHHHHHH
Confidence 55433333443
No 133
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.30 E-value=0.0014 Score=59.02 Aligned_cols=211 Identities=11% Similarity=-0.047 Sum_probs=144.0
Q ss_pred HHHHHhcCCChhHHhhhHHHHHHHHHhCCC-CCH--HHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHH
Q 019734 69 LNKIAASFTLPQLRAASLVCKSWNDALRPL-REA--MVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDA 143 (336)
Q Consensus 69 l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~--~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~l 143 (336)
+..+....+.|+...+ ..++..+++. ++. ......+.+... .+|++.|..-..++.+. .++......
T Consensus 122 l~aA~AA~qrgd~~~a----n~yL~eaae~~~~~~l~v~ltrarlll~----~~d~~aA~~~v~~ll~~~pr~~~vlrLa 193 (400)
T COG3071 122 LLAAEAAQQRGDEDRA----NRYLAEAAELAGDDTLAVELTRARLLLN----RRDYPAARENVDQLLEMTPRHPEVLRLA 193 (400)
T ss_pred HHHHHHHHhcccHHHH----HHHHHHHhccCCCchHHHHHHHHHHHHh----CCCchhHHHHHHHHHHhCcCChHHHHHH
Confidence 4455555677888888 4555555443 333 334445555555 57899999999988887 488888888
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHc---CCHHH-----------------------------------------HHHHHHHH
Q 019734 144 GLMYWEMDKKEAAISLYRQAAVL---GDPAG-----------------------------------------QFNLGISY 179 (336)
Q Consensus 144 g~~~~~~~~~~~A~~~~~~a~~~---~~~~a-----------------------------------------~~~Lg~~~ 179 (336)
-.+|...|++.....++.+..+. ++.++ ...++.-+
T Consensus 194 ~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~l 273 (400)
T COG3071 194 LRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERL 273 (400)
T ss_pred HHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHH
Confidence 88998888888777776555432 11111 11111111
Q ss_pred HH----HHHHHHHHHHHHcC-CHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCccc
Q 019734 180 LQ----EEAVKLLYQASIAG-HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAE--GGYVRAMYNTSLCYSFGEGLPLS 252 (336)
Q Consensus 180 ~~----~~A~~~~~ka~~~~-~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~~~g~~~~ 252 (336)
.. ++|.++.+.+++.. ++.-...++.+ ..+|+..=++..++.+. +.++..+..||.+|.+ .+.
T Consensus 274 i~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l------~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k----~~~ 343 (400)
T COG3071 274 IRLGDHDEAQEIIEDALKRQWDPRLCRLIPRL------RPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALK----NKL 343 (400)
T ss_pred HHcCChHHHHHHHHHHHHhccChhHHHHHhhc------CCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHH----hhH
Confidence 11 77777777777653 55522222222 24566666666666544 4678999999999986 449
Q ss_pred HHHHHHHHHHHHHcC-CHHHHHHHHHHhhccCCHHHHHHHHHHHHH
Q 019734 253 HRQARKWMKRAADCG-HGKAQLEHGLGLFTEGEMMKAVVYLELATR 297 (336)
Q Consensus 253 ~~~A~~~~~~a~~~~-~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~ 297 (336)
+.+|..+++.|+... ....+..+|.++...|+..+|-..+++++.
T Consensus 344 w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 344 WGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred HHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 999999999999874 466778999999999999999999999974
No 134
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.30 E-value=1.5e-05 Score=56.82 Aligned_cols=57 Identities=25% Similarity=0.366 Sum_probs=25.6
Q ss_pred HHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 019734 104 LLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAA 164 (336)
Q Consensus 104 ~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~ 164 (336)
++.+|.++.. .+++++|+.+|+++++. .+..+++.+|.++...+++++|+.+|.+++
T Consensus 3 ~~~~a~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 61 (100)
T cd00189 3 LLNLGNLYYK----LGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKAL 61 (100)
T ss_pred HHHHHHHHHH----HhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444 34444455444444443 123344444444444444444444444444
No 135
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.29 E-value=0.00046 Score=58.49 Aligned_cols=161 Identities=12% Similarity=-0.008 Sum_probs=122.3
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHH----HHHHHHHHHHHHcCCHH---HHHHHHHHHhcCC
Q 019734 141 VDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQ----EEAVKLLYQASIAGHVR---AQYQLALCLHRGR 211 (336)
Q Consensus 141 ~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~----~~A~~~~~ka~~~~~~~---a~~~lg~~~~~g~ 211 (336)
-++.......++.+-|..++++.-+. ++....-.-|+.+.. ++|+++|+..++.+..+ --..++.+-..|
T Consensus 56 EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~G- 134 (289)
T KOG3060|consen 56 EQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQG- 134 (289)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcC-
Confidence 34555666678999999999886544 777777777777766 99999999998875322 224566666654
Q ss_pred CCccCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcC--CHHHHHHHHHHhhccC---C
Q 019734 212 GVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCG--HGKAQLEHGLGLFTEG---E 284 (336)
Q Consensus 212 g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~---~ 284 (336)
...+|++-+..-++. +|.++|..|+.+|.. .+++++|..+|+..+-.. ++.-+..||.+++-.| +
T Consensus 135 ----K~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~----~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN 206 (289)
T KOG3060|consen 135 ----KNLEAIKELNEYLDKFMNDQEAWHELAEIYLS----EGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAEN 206 (289)
T ss_pred ----CcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh----HhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHH
Confidence 445888888888775 899999999999976 349999999999998653 4555578888888766 8
Q ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHH
Q 019734 285 MMKAVVYLELATRAGETAADHVKNVI 310 (336)
Q Consensus 285 ~~~A~~~~~~A~~~~~~~a~~~~~~~ 310 (336)
++-|.++|.+|+...+......+++.
T Consensus 207 ~~~arkyy~~alkl~~~~~ral~GI~ 232 (289)
T KOG3060|consen 207 LELARKYYERALKLNPKNLRALFGIY 232 (289)
T ss_pred HHHHHHHHHHHHHhChHhHHHHHHHH
Confidence 99999999999998765555444443
No 136
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.29 E-value=9.1e-05 Score=66.68 Aligned_cols=155 Identities=17% Similarity=0.057 Sum_probs=124.5
Q ss_pred HHHHHHHHhcCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcC--CH------
Q 019734 66 FDVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--ST------ 137 (336)
Q Consensus 66 ~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~~--~~------ 137 (336)
...+-++--..-.+++.+|+......++..+. +.++++.-|.++.. ..+.++|+.+|.+++.++ +.
T Consensus 170 ~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~--n~~al~vrg~~~yy----~~~~~ka~~hf~qal~ldpdh~~sk~~~ 243 (486)
T KOG0550|consen 170 KAKLLKAECLAFLGDYDEAQSEAIDILKLDAT--NAEALYVRGLCLYY----NDNADKAINHFQQALRLDPDHQKSKSAS 243 (486)
T ss_pred HHHHhhhhhhhhcccchhHHHHHHHHHhcccc--hhHHHHhccccccc----ccchHHHHHHHhhhhccChhhhhHHhHh
Confidence 33444555556778999999999999998777 89999999999888 689999999999999875 22
Q ss_pred ------HHHHHHHHHHhcCCCHHHHHHHHHHHHHcC------CHHHHHHHHHHHHH----HHHHHHHHHHHHcC--CHHH
Q 019734 138 ------LAMVDAGLMYWEMDKKEAAISLYRQAAVLG------DPAGQFNLGISYLQ----EEAVKLLYQASIAG--HVRA 199 (336)
Q Consensus 138 ------~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~------~~~a~~~Lg~~~~~----~~A~~~~~ka~~~~--~~~a 199 (336)
+.+-.-|.-.++.|++.+|-+.|..|+..+ ++..+.+.+.+... .+|+.-...|++.+ +..+
T Consensus 244 ~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syika 323 (486)
T KOG0550|consen 244 MMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKA 323 (486)
T ss_pred hhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHH
Confidence 334556777778899999999999998652 23344555555555 99999999998875 6789
Q ss_pred HHHHHHHHhcCCCCccCHHHHHHHHHHHHHC
Q 019734 200 QYQLALCLHRGRGVDFNLQEAARWYLRAAEG 230 (336)
Q Consensus 200 ~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~ 230 (336)
+..-|.|+.. .+++.+|++.|+++.+.
T Consensus 324 ll~ra~c~l~----le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 324 LLRRANCHLA----LEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHhh
Confidence 9999999987 88999999999999765
No 137
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.28 E-value=2e-05 Score=68.84 Aligned_cols=97 Identities=13% Similarity=0.065 Sum_probs=80.6
Q ss_pred HHHHHHHHhc-CCChhHHhhhHHHHHHHHHhCCCC-CHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--C---CHH
Q 019734 66 FDVLNKIAAS-FTLPQLRAASLVCKSWNDALRPLR-EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--G---STL 138 (336)
Q Consensus 66 ~~~l~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~-~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~---~~~ 138 (336)
......+..+ +..+++.+|+..+..+++.-|+.. .+.++|.||.+|.. .+++++|+.+|++.+.. + .++
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~----~g~~~~A~~~f~~vv~~yP~s~~~~d 218 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYN----KGKKDDAAYYFASVVKNYPKSPKAAD 218 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHCCCCcchhH
Confidence 3446666665 567899999999999999988743 26899999999988 68999999999999875 2 578
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 019734 139 AMVDAGLMYWEMDKKEAAISLYRQAAVL 166 (336)
Q Consensus 139 a~~~lg~~~~~~~~~~~A~~~~~~a~~~ 166 (336)
+++.+|.++...|+.++|+..|++.++.
T Consensus 219 Al~klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 219 AMFKVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999998865
No 138
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.27 E-value=3.4e-06 Score=57.05 Aligned_cols=58 Identities=16% Similarity=0.293 Sum_probs=47.2
Q ss_pred HHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 019734 105 LRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL 166 (336)
Q Consensus 105 ~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~ 166 (336)
+.+|..+.. .+++++|+..|+++++. +++.+++.+|.++...|++++|+.+|+++++.
T Consensus 1 ~~~a~~~~~----~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 1 YALARALYQ----QGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHHH----CTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred ChHHHHHHH----cCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 356777777 58899999999998887 47888899999999999999999999888754
No 139
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.26 E-value=0.0006 Score=65.26 Aligned_cols=221 Identities=16% Similarity=0.068 Sum_probs=149.1
Q ss_pred HHHHHhcCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCC-CcCCHHHHHHHHHHHHHcC-CHHHHHHHHHH
Q 019734 69 LNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRG-VRKNLDKALDSFLKGAARG-STLAMVDAGLM 146 (336)
Q Consensus 69 l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g-~~~~~~~A~~~~~~A~~~~-~~~a~~~lg~~ 146 (336)
-.++.-++..|++++|...|+.+++..|+ +...+..|..+.-.-.+ ...+.+.-...|+.....- ...+...+...
T Consensus 42 E~rA~ll~kLg~~~eA~~~y~~Li~rNPd--n~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~ 119 (517)
T PF12569_consen 42 EKRAELLLKLGRKEEAEKIYRELIDRNPD--NYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLD 119 (517)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCC--cHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccchhHhhcc
Confidence 44555667889999999999999999888 77777766666522111 1235677777787665442 22333344444
Q ss_pred HhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHH-------HHHHHHHHHHHHc------------CCH----HHHHH
Q 019734 147 YWEMDKKEA-AISLYRQAAVLGDPAGQFNLGISYLQ-------EEAVKLLYQASIA------------GHV----RAQYQ 202 (336)
Q Consensus 147 ~~~~~~~~~-A~~~~~~a~~~~~~~a~~~Lg~~~~~-------~~A~~~~~ka~~~------------~~~----~a~~~ 202 (336)
+..+.++.. +..++...+..|.|..+.+|-.+|.. ..-+.-|...++. ..+ .+++.
T Consensus 120 ~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~ 199 (517)
T PF12569_consen 120 FLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYF 199 (517)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHH
Confidence 444445554 44455667788999998888888875 2222222222110 111 35688
Q ss_pred HHHHHhcCCCCccCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCCHHHHH--HHHHH
Q 019734 203 LALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQL--EHGLG 278 (336)
Q Consensus 203 lg~~~~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~~~~~a~~--~lg~~ 278 (336)
|+..|.. .+++++|+.+.++|++. ..++.++.-|.+|.+ .| ++.+|..+++.|-..+..+-+. ..+..
T Consensus 200 lAqhyd~----~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh-~G---~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy 271 (517)
T PF12569_consen 200 LAQHYDY----LGDYEKALEYIDKAIEHTPTLVELYMTKARILKH-AG---DLKEAAEAMDEARELDLADRYINSKCAKY 271 (517)
T ss_pred HHHHHHH----hCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH-CC---CHHHHHHHHHHHHhCChhhHHHHHHHHHH
Confidence 8888887 78999999999999876 457888888999965 33 9999999999998877766653 44566
Q ss_pred hhccCCHHHHHHHHHHHHHcC
Q 019734 279 LFTEGEMMKAVVYLELATRAG 299 (336)
Q Consensus 279 ~~~~~~~~~A~~~~~~A~~~~ 299 (336)
+.+.|++++|......=.+.+
T Consensus 272 ~LRa~~~e~A~~~~~~Ftr~~ 292 (517)
T PF12569_consen 272 LLRAGRIEEAEKTASLFTRED 292 (517)
T ss_pred HHHCCCHHHHHHHHHhhcCCC
Confidence 677888888888777765544
No 140
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.26 E-value=1.4e-05 Score=69.11 Aligned_cols=88 Identities=18% Similarity=0.246 Sum_probs=49.6
Q ss_pred CCHHHHHHHHHHHHHcC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHH----HHHHHHHHH
Q 019734 119 KNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQ----EEAVKLLYQ 190 (336)
Q Consensus 119 ~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~----~~A~~~~~k 190 (336)
+++.+|+..|.+|+++. ++.-+.+.+-+|.+.|.++.|++-.+.|+.. ....+|..||.+|+. ++|++.|+|
T Consensus 95 ~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~aykK 174 (304)
T KOG0553|consen 95 KDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKK 174 (304)
T ss_pred hhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHHHHHh
Confidence 56666666666666652 4555555666666666666666666665544 345566666666655 566666666
Q ss_pred HHHc--CCHHHHHHHHHH
Q 019734 191 ASIA--GHVRAQYQLALC 206 (336)
Q Consensus 191 a~~~--~~~~a~~~lg~~ 206 (336)
|++. .+....-+|..+
T Consensus 175 aLeldP~Ne~~K~nL~~A 192 (304)
T KOG0553|consen 175 ALELDPDNESYKSNLKIA 192 (304)
T ss_pred hhccCCCcHHHHHHHHHH
Confidence 6554 244444444443
No 141
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=98.25 E-value=0.00017 Score=63.97 Aligned_cols=222 Identities=14% Similarity=0.049 Sum_probs=145.5
Q ss_pred ChHHHHHHHHhcCCChhHHhhhHHHHHHHHHhCCCCCHHHHH-HHHHHHhcCCCCcCCHHHHHHH----HHHHHHcCC--
Q 019734 64 LPFDVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLL-RWGKRFKHGRGVRKNLDKALDS----FLKGAARGS-- 136 (336)
Q Consensus 64 ~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~-~lg~~~~~g~g~~~~~~~A~~~----~~~A~~~~~-- 136 (336)
.++..+..+..++...++.+++....+-+....+ .+.-+ .||-.-..+ -..+.+++++.+ ..-+.+..+
T Consensus 5 q~k~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~---~~~Rf~~lG~l~~a~-s~~g~y~~mL~~a~sqi~~a~~~~ds~ 80 (518)
T KOG1941|consen 5 QTKKQIEKGLQLYQSNQTEKALQVWTKVLEKLSD---LMGRFRVLGCLVTAH-SEMGRYKEMLKFAVSQIDTARELEDSD 80 (518)
T ss_pred hhHHHHHHHHhHhcCchHHHHHHHHHHHHHHHHH---HHHHHHHhccchhhh-hhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556678888899999999998555554544332 22221 122211111 001233333322 222222222
Q ss_pred --HHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-C------CHHHHHHHHHHHHH----HHHHHHHHHHHHc----CCH--
Q 019734 137 --TLAMVDAGLMYWEMDKKEAAISLYRQAAVL-G------DPAGQFNLGISYLQ----EEAVKLLYQASIA----GHV-- 197 (336)
Q Consensus 137 --~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~-~------~~~a~~~Lg~~~~~----~~A~~~~~ka~~~----~~~-- 197 (336)
-+++.+|++-+...-++.+++.+-+-.+.. | --.+..-+|+++.. ++++++|++|... +++
T Consensus 81 ~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~L 160 (518)
T KOG1941|consen 81 FLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAML 160 (518)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCcee
Confidence 367888888888888888888887766643 1 12455667777776 9999999999763 332
Q ss_pred --HHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHC------CCH------HHHHHHHHHHHcCCCCcccHHHHHHHHHHH
Q 019734 198 --RAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG------GYV------RAMYNTSLCYSFGEGLPLSHRQARKWMKRA 263 (336)
Q Consensus 198 --~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~------~~~------~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a 263 (336)
..+.-||.+|.. .+|+++|..+..+|++. ++. .+.+.++..+.. .| ..-.|.++-+.|
T Consensus 161 Elqvcv~Lgslf~~----l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~-~G---~LgdA~e~C~Ea 232 (518)
T KOG1941|consen 161 ELQVCVSLGSLFAQ----LKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRL-LG---RLGDAMECCEEA 232 (518)
T ss_pred eeehhhhHHHHHHH----HHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHH-hc---ccccHHHHHHHH
Confidence 467788888887 89999999999999653 343 456677777743 33 566666666666
Q ss_pred HH----cCCHH----HHHHHHHHhhccCCHHHHHHHHHHHHH
Q 019734 264 AD----CGHGK----AQLEHGLGLFTEGEMMKAVVYLELATR 297 (336)
Q Consensus 264 ~~----~~~~~----a~~~lg~~~~~~~~~~~A~~~~~~A~~ 297 (336)
.+ .|+-. ...-+|.+|.+.||.+.|+.-|+.|..
T Consensus 233 ~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 233 MKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHH
Confidence 44 46643 347899999999999999999999975
No 142
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.25 E-value=6e-05 Score=59.90 Aligned_cols=116 Identities=17% Similarity=-0.006 Sum_probs=86.1
Q ss_pred cCCHHHHHHHHHHHHHc--CC---HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 019734 118 RKNLDKALDSFLKGAAR--GS---TLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAGQFNLGISYLQEEAVKLLYQAS 192 (336)
Q Consensus 118 ~~~~~~A~~~~~~A~~~--~~---~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~~~A~~~~~ka~ 192 (336)
.++...+...+++.+.. +. ..+.+.+|.+++..|++++|+..|+++++......+.
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~------------------- 84 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELK------------------- 84 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHH-------------------
Confidence 36777887778877765 23 4677889999999999999999999988764111111
Q ss_pred HcCCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHH
Q 019734 193 IAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG-GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAA 264 (336)
Q Consensus 193 ~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~-~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~ 264 (336)
+.+.+.|+.++.. .+++++|+..++..... -.+.+...+|.+|... ++.++|+..|++|+
T Consensus 85 ----~~a~l~LA~~~~~----~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~----g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 85 ----PLARLRLARILLQ----QGQYDEALATLQQIPDEAFKALAAELLGDIYLAQ----GDYDEARAAYQKAL 145 (145)
T ss_pred ----HHHHHHHHHHHHH----cCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHC----CCHHHHHHHHHHhC
Confidence 2345567777777 78999999999775332 3567788999999763 39999999999874
No 143
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.22 E-value=7e-06 Score=58.66 Aligned_cols=77 Identities=19% Similarity=0.220 Sum_probs=61.1
Q ss_pred ccCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH--cCCHHHHHHHHHHhhccCCHHH
Q 019734 214 DFNLQEAARWYLRAAEGG----YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAAD--CGHGKAQLEHGLGLFTEGEMMK 287 (336)
Q Consensus 214 ~~~~~~A~~~~~~a~~~~----~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~~~~~~~ 287 (336)
.++++.|+.+|+++++.. +...++.+|.||.... ++++|+.++++ .. ..+....+.+|.++...|++++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~----~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~e 76 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQG----KYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEE 76 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTT----HHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCC----CHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHH
Confidence 478999999999997543 3456777899998744 99999999988 33 3556778888999999999999
Q ss_pred HHHHHHHH
Q 019734 288 AVVYLELA 295 (336)
Q Consensus 288 A~~~~~~A 295 (336)
|+..|++|
T Consensus 77 Ai~~l~~~ 84 (84)
T PF12895_consen 77 AIKALEKA 84 (84)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhcC
Confidence 99999875
No 144
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.21 E-value=6.2e-05 Score=72.21 Aligned_cols=143 Identities=16% Similarity=-0.002 Sum_probs=80.3
Q ss_pred CCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHH
Q 019734 96 RPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAGQF 173 (336)
Q Consensus 96 ~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~ 173 (336)
+....+-.+|..|.-|.. .+..+++.+|+.+|++|++. +++.++-.++.+|.....+.. ..+.
T Consensus 334 ~~~~~Ay~~~lrg~~~~~-~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~------------~~~~-- 398 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLN-SGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQP------------LDEK-- 398 (517)
T ss_pred CCCHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCC------------ccHH--
Confidence 333455566666766655 23355677888888888876 466666666665533211000 0000
Q ss_pred HHHHHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHcCCC
Q 019734 174 NLGISYLQEEAVKLLYQASI----AGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGG-YVRAMYNTSLCYSFGEG 248 (336)
Q Consensus 174 ~Lg~~~~~~~A~~~~~ka~~----~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~~-~~~a~~~lg~~~~~~~g 248 (336)
.+ ..+....+++.. ..++.++..+|..... .+++++|...|++|++.. +..++..+|.++..
T Consensus 399 ~l------~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~----~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~--- 465 (517)
T PRK10153 399 QL------AALSTELDNIVALPELNVLPRIYEILAVQALV----KGKTDEAYQAINKAIDLEMSWLNYVLLGKVYEL--- 465 (517)
T ss_pred HH------HHHHHHHHHhhhcccCcCChHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH---
Confidence 00 122222333322 1345556666666554 567777777777776542 46667777777754
Q ss_pred CcccHHHHHHHHHHHHHcC
Q 019734 249 LPLSHRQARKWMKRAADCG 267 (336)
Q Consensus 249 ~~~~~~~A~~~~~~a~~~~ 267 (336)
.++.++|+.+|++|+..+
T Consensus 466 -~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 466 -KGDNRLAADAYSTAFNLR 483 (517)
T ss_pred -cCCHHHHHHHHHHHHhcC
Confidence 227777777777777653
No 145
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=5.2e-05 Score=65.89 Aligned_cols=106 Identities=21% Similarity=0.202 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHH-------HHHHHHHH
Q 019734 121 LDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQ-------EEAVKLLY 189 (336)
Q Consensus 121 ~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~-------~~A~~~~~ 189 (336)
++.-+.-++.-+.. +|.+.|..||.+|...|++..|...|.+|+.. ++++.+..+|.++.. .++...|+
T Consensus 138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~ 217 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLR 217 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 45555555555544 67888888888888888888888888888765 678888888887776 77777777
Q ss_pred HHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHC
Q 019734 190 QASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG 230 (336)
Q Consensus 190 ka~~~--~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~ 230 (336)
+++.. .+..+.+.||..+.+ .+|+.+|+..++..++.
T Consensus 218 ~al~~D~~~iral~lLA~~afe----~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 218 QALALDPANIRALSLLAFAAFE----QGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHhcCCccHHHHHHHHHHHHH----cccHHHHHHHHHHHHhc
Confidence 77665 466777777777776 67777777777776554
No 146
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.20 E-value=0.0005 Score=59.56 Aligned_cols=174 Identities=11% Similarity=-0.033 Sum_probs=121.7
Q ss_pred ChHHHHHHHHhcCCChhHHhhhHHHHHHHHHhCCCCC-HHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc-----CCH
Q 019734 64 LPFDVLNKIAASFTLPQLRAASLVCKSWNDALRPLRE-AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR-----GST 137 (336)
Q Consensus 64 ~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~-----~~~ 137 (336)
.+......+...+..|++.+|+..+..+....|..+. ..+.+.||.+|.. .+++++|+.+|++.++. ..+
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~----~~~y~~A~~~~e~fi~~~P~~~~~~ 106 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYK----NADLPLAQAAIDRFIRLNPTHPNID 106 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCcCCCchH
Confidence 3455678888889999999999999999998876432 3456889999998 68999999999999986 246
Q ss_pred HHHHHHHHHHhcCC---------------C---HHHHHHHHHHHHHc--CC---HHHHHHHHHHHHHHHHHHHHHHHHHc
Q 019734 138 LAMVDAGLMYWEMD---------------K---KEAAISLYRQAAVL--GD---PAGQFNLGISYLQEEAVKLLYQASIA 194 (336)
Q Consensus 138 ~a~~~lg~~~~~~~---------------~---~~~A~~~~~~a~~~--~~---~~a~~~Lg~~~~~~~A~~~~~ka~~~ 194 (336)
.+++.+|.++...+ | ..+|+..|++.++. +. ++|...|..+..
T Consensus 107 ~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~-------------- 172 (243)
T PRK10866 107 YVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKD-------------- 172 (243)
T ss_pred HHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHH--------------
Confidence 78899998753332 2 24566777777765 22 233332222211
Q ss_pred CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHH
Q 019734 195 GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG-----GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRA 263 (336)
Q Consensus 195 ~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~-----~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a 263 (336)
....-.+.+|..|.. .+++.-|+.-++..++. ...++++.+...|... | ..++|..+....
T Consensus 173 ~la~~e~~ia~~Y~~----~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~l-g---~~~~a~~~~~~l 238 (243)
T PRK10866 173 RLAKYELSVAEYYTK----RGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQL-Q---LNAQADKVAKII 238 (243)
T ss_pred HHHHHHHHHHHHHHH----cCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHc-C---ChHHHHHHHHHH
Confidence 123334567888887 78888999988888764 3578888888888542 2 666776665443
No 147
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.19 E-value=3.6e-05 Score=58.71 Aligned_cols=94 Identities=23% Similarity=0.208 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--C--
Q 019734 197 VRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGY-----VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--G-- 267 (336)
Q Consensus 197 ~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~~~-----~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~--~-- 267 (336)
+.+.|++|.++.. .|+.++|+.+|++++..|- ..++..+|..|.. .| ++++|+.+++.++.. +
T Consensus 1 ~~~~~~~A~a~d~----~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~-LG---~~deA~~~L~~~~~~~p~~~ 72 (120)
T PF12688_consen 1 PRALYELAWAHDS----LGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRN-LG---RYDEALALLEEALEEFPDDE 72 (120)
T ss_pred CchHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHH-cC---CHHHHHHHHHHHHHHCCCcc
Confidence 3578889999888 8999999999999988652 4578889999864 33 999999999999875 3
Q ss_pred -CHHHHHHHHHHhhccCCHHHHHHHHHHHHHc
Q 019734 268 -HGKAQLEHGLGLFTEGEMMKAVVYLELATRA 298 (336)
Q Consensus 268 -~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~ 298 (336)
+......++.++...|+.++|+.++-.++..
T Consensus 73 ~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la~ 104 (120)
T PF12688_consen 73 LNAALRVFLALALYNLGRPKEALEWLLEALAE 104 (120)
T ss_pred ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 3455677888899999999999999888763
No 148
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.19 E-value=0.00019 Score=60.00 Aligned_cols=194 Identities=16% Similarity=0.154 Sum_probs=123.5
Q ss_pred cCCHHHHHHHHHHHHHc-----C---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---HHHHH
Q 019734 118 RKNLDKALDSFLKGAAR-----G---STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAGQFNLGISYLQ---EEAVK 186 (336)
Q Consensus 118 ~~~~~~A~~~~~~A~~~-----~---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~---~~A~~ 186 (336)
...+++|.++|.+|+.. + -..++...+.++...|+..+| ...+..-+.+|.. ++|+.
T Consensus 27 ~~k~eeAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDa------------at~YveA~~cykk~~~~eAv~ 94 (288)
T KOG1586|consen 27 SNKYEEAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDA------------ATTYVEAANCYKKVDPEEAVN 94 (288)
T ss_pred CcchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhH------------HHHHHHHHHHhhccChHHHHH
Confidence 35899999999998753 0 112333333333333333333 3344455667766 99999
Q ss_pred HHHHHHHc----C-CH---HHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHC--C-C-----HHHHHHHHHHHHcCCCCc
Q 019734 187 LLYQASIA----G-HV---RAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--G-Y-----VRAMYNTSLCYSFGEGLP 250 (336)
Q Consensus 187 ~~~ka~~~----~-~~---~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~--~-~-----~~a~~~lg~~~~~~~g~~ 250 (336)
+++++++. | .. .-...+|.+|+.. ..|+++|+.+|+.|++- + . ...+...+..-.. -
T Consensus 95 cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsd---l~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~----l 167 (288)
T KOG1586|consen 95 CLEKAIEIYTDMGRFTMAAKHHIEIAEIYESD---LQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQ----L 167 (288)
T ss_pred HHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhh---HHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHH----H
Confidence 99999874 3 22 2345788999873 58999999999999762 1 1 1223333332221 2
Q ss_pred ccHHHHHHHHHHHHHc--CCH-------HHHHHHHHHhhccCCHHHHHHHHHHHHHcCc----HHHHHHHHHHHhhcChh
Q 019734 251 LSHRQARKWMKRAADC--GHG-------KAQLEHGLGLFTEGEMMKAVVYLELATRAGE----TAADHVKNVILQQLSAT 317 (336)
Q Consensus 251 ~~~~~A~~~~~~a~~~--~~~-------~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~~----~~a~~~~~~~~~~~~~~ 317 (336)
..+.+|+..|++.+.. +++ +-.+.-|.|+....|.-.+...+++-.+..+ ..-+..+..+...+...
T Consensus 168 eqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsREckflk~L~~aieE~ 247 (288)
T KOG1586|consen 168 EQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSRECKFLKDLLDAIEEQ 247 (288)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHhhh
Confidence 2899999999988752 332 2236778888888999888888888888754 34455666666666666
Q ss_pred cHHHHHHHHHHhh
Q 019734 318 SRDRAMLVVDSWR 330 (336)
Q Consensus 318 ~~~~a~~~~~~~~ 330 (336)
+.+.--+.++++-
T Consensus 248 d~e~fte~vkefD 260 (288)
T KOG1586|consen 248 DIEKFTEVVKEFD 260 (288)
T ss_pred hHHHHHHHHHhhh
Confidence 6665555555543
No 149
>PRK11906 transcriptional regulator; Provisional
Probab=98.18 E-value=0.00022 Score=65.82 Aligned_cols=150 Identities=10% Similarity=0.031 Sum_probs=114.0
Q ss_pred HHHHHHHHH-------HHHHHHHHHHH---Hc--CCHHHHHHHHHHHhc----CC-CCccCHHHHHHHHHHHHHC--CCH
Q 019734 173 FNLGISYLQ-------EEAVKLLYQAS---IA--GHVRAQYQLALCLHR----GR-GVDFNLQEAARWYLRAAEG--GYV 233 (336)
Q Consensus 173 ~~Lg~~~~~-------~~A~~~~~ka~---~~--~~~~a~~~lg~~~~~----g~-g~~~~~~~A~~~~~~a~~~--~~~ 233 (336)
+..|..... +.|+.+|.+|+ +. +++.++..++.|+.. |+ ....+..+|...-++|++. .|+
T Consensus 259 ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da 338 (458)
T PRK11906 259 MLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDG 338 (458)
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCH
Confidence 556666544 88899999998 43 578888888888764 44 2467888999999999765 689
Q ss_pred HHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhccCCHHHHHHHHHHHHHcCcHH-HHHHHHHH
Q 019734 234 RAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETA-ADHVKNVI 310 (336)
Q Consensus 234 ~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~~~~-a~~~~~~~ 310 (336)
.++..+|.++.. ..+++.|..+|++|... +.+.+++..|++..-.|+.++|..+.++|++..+-. +...+...
T Consensus 339 ~a~~~~g~~~~~----~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~ 414 (458)
T PRK11906 339 KILAIMGLITGL----SGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKEC 414 (458)
T ss_pred HHHHHHHHHHHh----hcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHH
Confidence 999999997754 23799999999999886 568888999999999999999999999999987654 44444444
Q ss_pred HhhcChhcHHHHHHHH
Q 019734 311 LQQLSATSRDRAMLVV 326 (336)
Q Consensus 311 ~~~~~~~~~~~a~~~~ 326 (336)
....-+...+.+..+.
T Consensus 415 ~~~~~~~~~~~~~~~~ 430 (458)
T PRK11906 415 VDMYVPNPLKNNIKLY 430 (458)
T ss_pred HHHHcCCchhhhHHHH
Confidence 4333344455555443
No 150
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.18 E-value=5e-05 Score=65.75 Aligned_cols=97 Identities=22% Similarity=0.107 Sum_probs=59.0
Q ss_pred ccCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCC--HHHHHHHHHHhhccCCHHHHH
Q 019734 214 DFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGH--GKAQLEHGLGLFTEGEMMKAV 289 (336)
Q Consensus 214 ~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~~~--~~a~~~lg~~~~~~~~~~~A~ 289 (336)
.++|.+|+..|.+|++. .++.-+.+-+.+|.+.. .++.|++-.+.|+..++ ..++..||.+|+.+|++++|+
T Consensus 94 ~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg----~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~ 169 (304)
T KOG0553|consen 94 NKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLG----EYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAI 169 (304)
T ss_pred hhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhc----chHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHH
Confidence 46677777777776554 34555556666665432 66677777777766533 556667777777777777777
Q ss_pred HHHHHHHHcC--cHHHHHHHHHHHhhc
Q 019734 290 VYLELATRAG--ETAADHVKNVILQQL 314 (336)
Q Consensus 290 ~~~~~A~~~~--~~~a~~~~~~~~~~~ 314 (336)
..|++|++.+ ++.....+......+
T Consensus 170 ~aykKaLeldP~Ne~~K~nL~~Ae~~l 196 (304)
T KOG0553|consen 170 EAYKKALELDPDNESYKSNLKIAEQKL 196 (304)
T ss_pred HHHHhhhccCCCcHHHHHHHHHHHHHh
Confidence 7777776654 334444444444444
No 151
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.17 E-value=0.00043 Score=58.32 Aligned_cols=78 Identities=22% Similarity=0.287 Sum_probs=62.1
Q ss_pred CHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--C---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--C---CH
Q 019734 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--G---STLAMVDAGLMYWEMDKKEAAISLYRQAAVL--G---DP 169 (336)
Q Consensus 100 ~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~---~~ 169 (336)
.+..+|..|..+.. .+++.+|+..|++.... + -+.+.+.+|..++..|++++|+..|++.+.. + .+
T Consensus 4 ~~~~lY~~a~~~~~----~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~ 79 (203)
T PF13525_consen 4 TAEALYQKALEALQ----QGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKAD 79 (203)
T ss_dssp -HHHHHHHHHHHHH----CT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHH
T ss_pred CHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchh
Confidence 57788889998888 58999999999998875 2 3688999999999999999999999998865 2 35
Q ss_pred HHHHHHHHHHHH
Q 019734 170 AGQFNLGISYLQ 181 (336)
Q Consensus 170 ~a~~~Lg~~~~~ 181 (336)
.+++.+|.++..
T Consensus 80 ~A~Y~~g~~~~~ 91 (203)
T PF13525_consen 80 YALYMLGLSYYK 91 (203)
T ss_dssp HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH
Confidence 688888887764
No 152
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.15 E-value=0.00011 Score=70.42 Aligned_cols=132 Identities=15% Similarity=-0.029 Sum_probs=95.1
Q ss_pred CCHHHH--HHHHHHHHH-------HHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCc----cCHHHHHHHHHHHHH--
Q 019734 167 GDPAGQ--FNLGISYLQ-------EEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVD----FNLQEAARWYLRAAE-- 229 (336)
Q Consensus 167 ~~~~a~--~~Lg~~~~~-------~~A~~~~~ka~~~--~~~~a~~~lg~~~~~g~g~~----~~~~~A~~~~~~a~~-- 229 (336)
.+++|+ +..|.-|.. .+|+.+|++|++. +++.++-.++.+|....+.. .+...+....+++..
T Consensus 335 ~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~ 414 (517)
T PRK10153 335 HQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALP 414 (517)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcc
Confidence 344443 555555544 7889999999765 67788887777765322211 234556666666543
Q ss_pred --CCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcC-CHHHHHHHHHHhhccCCHHHHHHHHHHHHHcCcHH
Q 019734 230 --GGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCG-HGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETA 302 (336)
Q Consensus 230 --~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~~-~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~~~~ 302 (336)
..++.++..+|..+.. .+++++|...+++|+..+ +..++..+|.++...|++++|..+|++|++.++..
T Consensus 415 ~~~~~~~~~~ala~~~~~----~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~ 486 (517)
T PRK10153 415 ELNVLPRIYEILAVQALV----KGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGE 486 (517)
T ss_pred cCcCChHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence 2456778888888754 339999999999999864 46778999999999999999999999999986543
No 153
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.14 E-value=8.6e-06 Score=57.24 Aligned_cols=61 Identities=21% Similarity=0.340 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc----CC-----HHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 019734 101 AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR----GS-----TLAMVDAGLMYWEMDKKEAAISLYRQAAV 165 (336)
Q Consensus 101 ~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~----~~-----~~a~~~lg~~~~~~~~~~~A~~~~~~a~~ 165 (336)
+.++..+|.+|.. .+++++|+.+|++|++. ++ ..++.++|.++...|++++|+.+|+++++
T Consensus 5 a~~~~~la~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRE----LGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHH----TT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5678899999998 68999999999999864 31 45778999999999999999999999875
No 154
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.11 E-value=6.9e-05 Score=65.12 Aligned_cols=106 Identities=13% Similarity=0.086 Sum_probs=91.7
Q ss_pred HcCCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CC
Q 019734 193 IAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAE--GGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GH 268 (336)
Q Consensus 193 ~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~--~~ 268 (336)
+.++.+.|..||.+|.. .+++..|...|.+|.. +++++.+..+|.++....| .++..++...+++++.. .+
T Consensus 152 nP~d~egW~~Lg~~ym~----~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~-~~~ta~a~~ll~~al~~D~~~ 226 (287)
T COG4235 152 NPGDAEGWDLLGRAYMA----LGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAG-QQMTAKARALLRQALALDPAN 226 (287)
T ss_pred CCCCchhHHHHHHHHHH----hcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC-CcccHHHHHHHHHHHhcCCcc
Confidence 35788899999999988 8999999999999965 5789999999998876654 67899999999999986 56
Q ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHHHHcCcHHH
Q 019734 269 GKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAA 303 (336)
Q Consensus 269 ~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~~~~a 303 (336)
..+.+.||..+++.|++.+|...|+.-++..+++.
T Consensus 227 iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 227 IRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 88889999999999999999999999998765543
No 155
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.11 E-value=1.2e-05 Score=54.34 Aligned_cols=60 Identities=17% Similarity=0.070 Sum_probs=44.7
Q ss_pred HHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhccCCHHHHHHHHHHHHHcCcH
Q 019734 238 NTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGET 301 (336)
Q Consensus 238 ~lg~~~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~~~ 301 (336)
.+|..+... +++++|+..|++++.. +++.+++.+|.++...|++++|..+|++++...+.
T Consensus 2 ~~a~~~~~~----g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~ 63 (65)
T PF13432_consen 2 ALARALYQQ----GDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPD 63 (65)
T ss_dssp HHHHHHHHC----THHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred hHHHHHHHc----CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 456666542 3888888888888875 45777888888888888888888888888876543
No 156
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.11 E-value=7.4e-05 Score=64.62 Aligned_cols=178 Identities=12% Similarity=-0.008 Sum_probs=128.0
Q ss_pred cCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcCCHHHHHHH--HHHHhcCCC
Q 019734 75 SFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDA--GLMYWEMDK 152 (336)
Q Consensus 75 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~l--g~~~~~~~~ 152 (336)
.+.+.++..++.+.....++.+. +-.++-.||.||.+ .+++..|..+|++...+....+.+.+ +.-+++.+.
T Consensus 20 lI~d~ry~DaI~~l~s~~Er~p~--~rAgLSlLgyCYY~----~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i 93 (459)
T KOG4340|consen 20 LIRDARYADAIQLLGSELERSPR--SRAGLSLLGYCYYR----LQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACI 93 (459)
T ss_pred HHHHhhHHHHHHHHHHHHhcCcc--chHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcc
Confidence 35667899999888888888776 66788889999999 68999999999999887665565544 556667788
Q ss_pred HHHHHHHHHHHHHcCC-HHHHH--HHHHHHHH---HHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCccCHHHHHHHHHH
Q 019734 153 KEAAISLYRQAAVLGD-PAGQF--NLGISYLQ---EEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLR 226 (336)
Q Consensus 153 ~~~A~~~~~~a~~~~~-~~a~~--~Lg~~~~~---~~A~~~~~ka~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~ 226 (336)
+..|+.......+... -+-.. .-+..|.. .-+....++....++++...+.|-+... .++++.|++-|+.
T Consensus 94 ~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllyk----egqyEaAvqkFqa 169 (459)
T KOG4340|consen 94 YADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYK----EGQYEAAVQKFQA 169 (459)
T ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeec----cccHHHHHHHHHH
Confidence 8888877666554311 11111 11122221 3344444444445778888999988877 7899999999999
Q ss_pred HHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc
Q 019734 227 AAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC 266 (336)
Q Consensus 227 a~~~--~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~ 266 (336)
|.+- -.+-..++++.++... +++..|+++....++.
T Consensus 170 AlqvsGyqpllAYniALaHy~~----~qyasALk~iSEIieR 207 (459)
T KOG4340|consen 170 ALQVSGYQPLLAYNLALAHYSS----RQYASALKHISEIIER 207 (459)
T ss_pred HHhhcCCCchhHHHHHHHHHhh----hhHHHHHHHHHHHHHh
Confidence 9765 3567778899998763 3899999998888774
No 157
>PRK15331 chaperone protein SicA; Provisional
Probab=98.09 E-value=6.5e-05 Score=59.83 Aligned_cols=90 Identities=17% Similarity=0.002 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHH--cCCHHHHHHHH
Q 019734 101 AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAV--LGDPAGQFNLG 176 (336)
Q Consensus 101 ~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~Lg 176 (336)
-+..|..|.-+.+ .|++++|...|+-.+.. .+++-++.||.++...+++++|+..|..|.. .+||...|..|
T Consensus 37 le~iY~~Ay~~y~----~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~ag 112 (165)
T PRK15331 37 MDGLYAHAYEFYN----QGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTG 112 (165)
T ss_pred HHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHH
Confidence 3456666666666 57899999999887765 4778888888899888999999999888764 47788888888
Q ss_pred HHHHH----HHHHHHHHHHHHc
Q 019734 177 ISYLQ----EEAVKLLYQASIA 194 (336)
Q Consensus 177 ~~~~~----~~A~~~~~ka~~~ 194 (336)
.||+. +.|+.+|+.+++.
T Consensus 113 qC~l~l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 113 QCQLLMRKAAKARQCFELVNER 134 (165)
T ss_pred HHHHHhCCHHHHHHHHHHHHhC
Confidence 88877 7777777777764
No 158
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.06 E-value=0.0016 Score=61.34 Aligned_cols=216 Identities=10% Similarity=0.020 Sum_probs=134.0
Q ss_pred HHHHHHHHhcCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc-CCHHHHHHHH
Q 019734 66 FDVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR-GSTLAMVDAG 144 (336)
Q Consensus 66 ~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~-~~~~a~~~lg 144 (336)
++.+.....+..++++++|...+.+.+...|+ +.++.+.-=.+..+ ...+++|+...++--.. -+..-.+.-+
T Consensus 13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pd--d~~a~~cKvValIq----~~ky~~ALk~ikk~~~~~~~~~~~fEKA 86 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGEYEEAVKTANKILSIVPD--DEDAIRCKVVALIQ----LDKYEDALKLIKKNGALLVINSFFFEKA 86 (652)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhcCCC--cHhhHhhhHhhhhh----hhHHHHHHHHHHhcchhhhcchhhHHHH
Confidence 57788888889999999999999999999887 55555543344433 35788888655543221 1111226888
Q ss_pred HHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----HHHHHHHHHHHHcC--CHHHHHHHHHHHhcCCCCccCHH
Q 019734 145 LMYWEMDKKEAAISLYRQAAVLGDPAGQFNLGISYLQ----EEAVKLLYQASIAG--HVRAQYQLALCLHRGRGVDFNLQ 218 (336)
Q Consensus 145 ~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~----~~A~~~~~ka~~~~--~~~a~~~lg~~~~~g~g~~~~~~ 218 (336)
+|.++.+..++|+..++ .++..+......-|.+++. ++|+..|+..++.+ +.+........ ..+ ..
T Consensus 87 Yc~Yrlnk~Dealk~~~-~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~-a~~------a~ 158 (652)
T KOG2376|consen 87 YCEYRLNKLDEALKTLK-GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLL-AVA------AA 158 (652)
T ss_pred HHHHHcccHHHHHHHHh-cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHH-HHH------Hh
Confidence 89999999999999988 5666665555555666555 88888888887653 22222221111 110 00
Q ss_pred HHHHHHHHHH--HCCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc-------CC----------HHHHHHHHHHh
Q 019734 219 EAARWYLRAA--EGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC-------GH----------GKAQLEHGLGL 279 (336)
Q Consensus 219 ~A~~~~~~a~--~~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~-------~~----------~~a~~~lg~~~ 279 (336)
....+.+... ..++-+.+||.+-++.. .| ++.+|++.+++|... ++ ......|+.++
T Consensus 159 l~~~~~q~v~~v~e~syel~yN~Ac~~i~-~g---ky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVl 234 (652)
T KOG2376|consen 159 LQVQLLQSVPEVPEDSYELLYNTACILIE-NG---KYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVL 234 (652)
T ss_pred hhHHHHHhccCCCcchHHHHHHHHHHHHh-cc---cHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHH
Confidence 0111222221 12355666777766643 23 788888888887321 11 12236777777
Q ss_pred hccCCHHHHHHHHHHHHHcC
Q 019734 280 FTEGEMMKAVVYLELATRAG 299 (336)
Q Consensus 280 ~~~~~~~~A~~~~~~A~~~~ 299 (336)
...|+.++|...|..-+...
T Consensus 235 Q~~Gqt~ea~~iy~~~i~~~ 254 (652)
T KOG2376|consen 235 QLQGQTAEASSIYVDIIKRN 254 (652)
T ss_pred HHhcchHHHHHHHHHHHHhc
Confidence 77888888888887777654
No 159
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.03 E-value=0.00015 Score=63.42 Aligned_cols=96 Identities=13% Similarity=0.087 Sum_probs=78.1
Q ss_pred CHHHHHHHHHHH-hcCCCCccCHHHHHHHHHHHHHC--CC---HHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc---
Q 019734 196 HVRAQYQLALCL-HRGRGVDFNLQEAARWYLRAAEG--GY---VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--- 266 (336)
Q Consensus 196 ~~~a~~~lg~~~-~~g~g~~~~~~~A~~~~~~a~~~--~~---~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~--- 266 (336)
.....|..+..+ .. .+++++|+..|++.+.. ++ +.+++.+|.+|.. .+++++|+..|++.+..
T Consensus 141 ~e~~~Y~~A~~l~~~----~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~----~g~~~~A~~~f~~vv~~yP~ 212 (263)
T PRK10803 141 DANTDYNAAIALVQD----KSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYN----KGKKDDAAYYFASVVKNYPK 212 (263)
T ss_pred CHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHCCC
Confidence 446667776654 33 47899999999999764 33 6899999999976 34999999999999963
Q ss_pred --CCHHHHHHHHHHhhccCCHHHHHHHHHHHHHcC
Q 019734 267 --GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAG 299 (336)
Q Consensus 267 --~~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~ 299 (336)
..+++++.+|.++...|++++|...|++.++..
T Consensus 213 s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~y 247 (263)
T PRK10803 213 SPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKY 247 (263)
T ss_pred CcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 247888999999999999999999999999864
No 160
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=98.02 E-value=1.3e-05 Score=47.11 Aligned_cols=36 Identities=36% Similarity=0.584 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcCC
Q 019734 101 AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGS 136 (336)
Q Consensus 101 ~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~~~ 136 (336)
+.+++.||.+|..|.|+++|..+|+.||++|++.++
T Consensus 1 ~~a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~~g~ 36 (36)
T smart00671 1 AEAQYNLGQMYEYGLGVKKDLEKALEYYKKAAELGN 36 (36)
T ss_pred CHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHccC
Confidence 368899999999999999999999999999998764
No 161
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.02 E-value=0.001 Score=65.00 Aligned_cols=153 Identities=20% Similarity=0.126 Sum_probs=90.0
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHH----------------------cCCHHHHHHHHHHHHH----HHHHHHHHHH
Q 019734 138 LAMVDAGLMYWEMDKKEAAISLYRQAAV----------------------LGDPAGQFNLGISYLQ----EEAVKLLYQA 191 (336)
Q Consensus 138 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~----------------------~~~~~a~~~Lg~~~~~----~~A~~~~~ka 191 (336)
..+++.+.-+...+|.+.|+++|+++-. ..++..+.+-|..+.. +-|+.+|.+|
T Consensus 859 ~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A 938 (1416)
T KOG3617|consen 859 NTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSA 938 (1416)
T ss_pred hhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHh
Confidence 3456666666667778888888877521 0223333333333332 5555555554
Q ss_pred H-----------------------HcCCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHH----------CCCHH----
Q 019734 192 S-----------------------IAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAE----------GGYVR---- 234 (336)
Q Consensus 192 ~-----------------------~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~----------~~~~~---- 234 (336)
- +.|+..|.|.||..|+. .++..+|+.+|.+|-. .+.-+
T Consensus 939 ~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn----~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~n 1014 (1416)
T KOG3617|consen 939 KDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYEN----DGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLAN 1014 (1416)
T ss_pred hhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhh----hHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 2 24677788889998888 7888889888887621 11111
Q ss_pred --------HHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--------------------------CCHHHHHHHHHHhh
Q 019734 235 --------AMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--------------------------GHGKAQLEHGLGLF 280 (336)
Q Consensus 235 --------a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~--------------------------~~~~a~~~lg~~~~ 280 (336)
-+...+..|....| +.++|...|.+|--. .++......+..+.
T Consensus 1015 lal~s~~~d~v~aArYyEe~g~---~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~ 1091 (1416)
T KOG3617|consen 1015 LALMSGGSDLVSAARYYEELGG---YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFE 1091 (1416)
T ss_pred HHhhcCchhHHHHHHHHHHcch---hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 22333444443333 666777766665211 12444456666667
Q ss_pred ccCCHHHHHHHHHHHHH
Q 019734 281 TEGEMMKAVVYLELATR 297 (336)
Q Consensus 281 ~~~~~~~A~~~~~~A~~ 297 (336)
+..+|++|++++-++-+
T Consensus 1092 ~~~qyekAV~lL~~ar~ 1108 (1416)
T KOG3617|consen 1092 NNQQYEKAVNLLCLARE 1108 (1416)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 77788888887766543
No 162
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.97 E-value=0.0017 Score=54.74 Aligned_cols=167 Identities=16% Similarity=0.124 Sum_probs=98.5
Q ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--C---CHHHHHHHHHHHHH----HHHHHHHHHHHHc-----CCHHHH
Q 019734 135 GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--G---DPAGQFNLGISYLQ----EEAVKLLYQASIA-----GHVRAQ 200 (336)
Q Consensus 135 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~---~~~a~~~Lg~~~~~----~~A~~~~~ka~~~-----~~~~a~ 200 (336)
..+..++..|..++..|++.+|+..|++.+.. + -+.+.+.+|.++.. ..|+..|++.++. ..+.++
T Consensus 3 ~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~ 82 (203)
T PF13525_consen 3 DTAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYAL 82 (203)
T ss_dssp --HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHH
Confidence 35778899999999999999999999999864 2 35777888888877 7777777777653 234577
Q ss_pred HHHHHHHhcCC-CC------ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCCHHHHH
Q 019734 201 YQLALCLHRGR-GV------DFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQL 273 (336)
Q Consensus 201 ~~lg~~~~~g~-g~------~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~~~~~a~~ 273 (336)
+.+|.++.... +. .....+|+..|+..++.-.. ..-..+|...+... ...-..-.+
T Consensus 83 Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~----------------S~y~~~A~~~l~~l-~~~la~~e~ 145 (203)
T PF13525_consen 83 YMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPN----------------SEYAEEAKKRLAEL-RNRLAEHEL 145 (203)
T ss_dssp HHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TT----------------STTHHHHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcC----------------chHHHHHHHHHHHH-HHHHHHHHH
Confidence 77777754311 11 12223334444433321000 00112222222211 111123347
Q ss_pred HHHHHhhccCCHHHHHHHHHHHHHc--Cc---HHHHHHHHHHHhhcChhc
Q 019734 274 EHGLGLFTEGEMMKAVVYLELATRA--GE---TAADHVKNVILQQLSATS 318 (336)
Q Consensus 274 ~lg~~~~~~~~~~~A~~~~~~A~~~--~~---~~a~~~~~~~~~~~~~~~ 318 (336)
.+|..|++.|.+..|+..++..++. +. +++...+......+...+
T Consensus 146 ~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~ 195 (203)
T PF13525_consen 146 YIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQ 195 (203)
T ss_dssp HHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChH
Confidence 8899999999999999999999985 22 345556666666665544
No 163
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.97 E-value=3e-05 Score=54.45 Aligned_cols=61 Identities=20% Similarity=0.206 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc----CC-----HHHHHHHHHHhhccCCHHHHHHHHHHHHH
Q 019734 233 VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC----GH-----GKAQLEHGLGLFTEGEMMKAVVYLELATR 297 (336)
Q Consensus 233 ~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~----~~-----~~a~~~lg~~~~~~~~~~~A~~~~~~A~~ 297 (336)
..++.++|.+|.. . +++++|+.+|+++++. ++ ..++.++|.+|...|++++|..+|+++++
T Consensus 5 a~~~~~la~~~~~-~---~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRE-L---GRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-c---CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3456677777754 2 2777777777777652 22 34567888888888888888888888876
No 164
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.92 E-value=6.2e-05 Score=69.30 Aligned_cols=65 Identities=14% Similarity=0.025 Sum_probs=50.7
Q ss_pred CCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHH---HHHHHHHHHhcCCCHHHHHHHHHHHHHcC
Q 019734 99 REAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTL---AMVDAGLMYWEMDKKEAAISLYRQAAVLG 167 (336)
Q Consensus 99 ~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~---a~~~lg~~~~~~~~~~~A~~~~~~a~~~~ 167 (336)
.++.+++++|.+|.. .+++++|+.+|++|++. ++++ +++++|.+|...|++++|+.+|++|++..
T Consensus 73 ~~a~a~~NLG~AL~~----lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 73 KTAEDAVNLGLSLFS----KGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred CCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 477888888888877 57888888888888876 3443 48888888888888888888888888764
No 165
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.91 E-value=0.00028 Score=60.66 Aligned_cols=100 Identities=11% Similarity=0.109 Sum_probs=86.8
Q ss_pred HHHHHHhcCCChhHHhhhHHHHHHHHHhCCC-CCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc-----CCHHHHH
Q 019734 68 VLNKIAASFTLPQLRAASLVCKSWNDALRPL-REAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR-----GSTLAMV 141 (336)
Q Consensus 68 ~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~-----~~~~a~~ 141 (336)
....+..++..|+|..|...++.+++.-|+. --++|+|-||.+++. .+|++.|...|..+++. --|++++
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~----qg~y~~Aa~~f~~~~k~~P~s~KApdall 219 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYA----QGDYEDAAYIFARVVKDYPKSPKAPDALL 219 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHh----cccchHHHHHHHHHHHhCCCCCCChHHHH
Confidence 6788889999999999999999999998763 357888889999998 68999999999999975 2579999
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHc--CCHHH
Q 019734 142 DAGLMYWEMDKKEAAISLYRQAAVL--GDPAG 171 (336)
Q Consensus 142 ~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a 171 (336)
.||.+....|+.++|...|++.++. +.+.+
T Consensus 220 Klg~~~~~l~~~d~A~atl~qv~k~YP~t~aA 251 (262)
T COG1729 220 KLGVSLGRLGNTDEACATLQQVIKRYPGTDAA 251 (262)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHH
Confidence 9999999999999999999999876 54444
No 166
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=97.90 E-value=1.8e-05 Score=47.37 Aligned_cols=36 Identities=31% Similarity=0.493 Sum_probs=32.4
Q ss_pred HHHHHHHH--HHHhcCC-CCcCCHHHHHHHHHHHHHcCC
Q 019734 101 AMVLLRWG--KRFKHGR-GVRKNLDKALDSFLKGAARGS 136 (336)
Q Consensus 101 ~~a~~~lg--~~~~~g~-g~~~~~~~A~~~~~~A~~~~~ 136 (336)
+++++.|| .+|..|. |+++|.++|+.||++|++.||
T Consensus 1 a~A~~~lg~~~~~~~g~~g~~~d~~~A~~~~~~Aa~~g~ 39 (39)
T PF08238_consen 1 AEAQYNLGMYYMYYNGKGGVPKDYEKAFKWYEKAAEQGH 39 (39)
T ss_dssp HHHHHHHHHHHHHHHTSTSSCHHHHHHHHHHHHHHHTT-
T ss_pred ChHHHHHHHHHhhhhccCCccccccchHHHHHHHHHccC
Confidence 57899999 8889999 899999999999999999875
No 167
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.88 E-value=0.00051 Score=59.56 Aligned_cols=172 Identities=14% Similarity=0.088 Sum_probs=123.4
Q ss_pred CCHHHHHHHHHHHHHcC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHH--HHHHH----HHHHHHHHH
Q 019734 119 KNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAGQFNLG--ISYLQ----EEAVKLLYQ 190 (336)
Q Consensus 119 ~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg--~~~~~----~~A~~~~~k 190 (336)
..+..|++++..-.+.. +-.++..||.+|+...++..|..+|.+....-...+.|.+- ..+.. ..|+.....
T Consensus 24 ~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~ 103 (459)
T KOG4340|consen 24 ARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFL 103 (459)
T ss_pred hhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 57888888887666553 45678899999999999999999999998776555555442 22222 555555444
Q ss_pred HHHcC---CHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc-
Q 019734 191 ASIAG---HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC- 266 (336)
Q Consensus 191 a~~~~---~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~- 266 (336)
..+.. ..-.+..-+..|. .+|+.-+....+.-...++++...+.|-+..+ +.+++.|++-|+.|.+-
T Consensus 104 ~~D~~~L~~~~lqLqaAIkYs-----e~Dl~g~rsLveQlp~en~Ad~~in~gCllyk----egqyEaAvqkFqaAlqvs 174 (459)
T KOG4340|consen 104 LLDNPALHSRVLQLQAAIKYS-----EGDLPGSRSLVEQLPSENEADGQINLGCLLYK----EGQYEAAVQKFQAALQVS 174 (459)
T ss_pred hcCCHHHHHHHHHHHHHHhcc-----cccCcchHHHHHhccCCCccchhccchheeec----cccHHHHHHHHHHHHhhc
Confidence 43321 1112233344444 46777777777776666888889999877654 33999999999999985
Q ss_pred CC-HHHHHHHHHHhhccCCHHHHHHHHHHHHHcC
Q 019734 267 GH-GKAQLEHGLGLFTEGEMMKAVVYLELATRAG 299 (336)
Q Consensus 267 ~~-~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~ 299 (336)
|. +-..++++.+++..++++.|.++..+.++.|
T Consensus 175 GyqpllAYniALaHy~~~qyasALk~iSEIieRG 208 (459)
T KOG4340|consen 175 GYQPLLAYNLALAHYSSRQYASALKHISEIIERG 208 (459)
T ss_pred CCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhh
Confidence 43 5566999999999999999999998887643
No 168
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=97.85 E-value=3.4e-05 Score=45.20 Aligned_cols=34 Identities=41% Similarity=0.589 Sum_probs=18.8
Q ss_pred HHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHCC
Q 019734 198 RAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGG 231 (336)
Q Consensus 198 ~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~~ 231 (336)
.+++.||.+|..|.|+..|..+|+.||++|++.+
T Consensus 2 ~a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~~g 35 (36)
T smart00671 2 EAQYNLGQMYEYGLGVKKDLEKALEYYKKAAELG 35 (36)
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHcc
Confidence 3455555555555555555555555555555443
No 169
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.83 E-value=0.002 Score=57.25 Aligned_cols=84 Identities=13% Similarity=0.054 Sum_probs=59.8
Q ss_pred CCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHhcCCCH
Q 019734 76 FTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKK 153 (336)
Q Consensus 76 ~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~ 153 (336)
+...++..|+.+..--.....+ .......-+|.|+++ .+|+++|..-|+.+.+.. +.+...+|+-+++..|.+
T Consensus 33 ls~rDytGAislLefk~~~~~E-EE~~~~lWia~C~fh----LgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 33 LSNRDYTGAISLLEFKLNLDRE-EEDSLQLWIAHCYFH----LGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HhcccchhHHHHHHHhhccchh-hhHHHHHHHHHHHHh----hccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHH
Confidence 4667788886444333222111 122344447999999 689999999999888764 567788999999999999
Q ss_pred HHHHHHHHHHH
Q 019734 154 EAAISLYRQAA 164 (336)
Q Consensus 154 ~~A~~~~~~a~ 164 (336)
.+|...-.++.
T Consensus 108 ~eA~~~~~ka~ 118 (557)
T KOG3785|consen 108 IEAKSIAEKAP 118 (557)
T ss_pred HHHHHHHhhCC
Confidence 99988776664
No 170
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=97.83 E-value=0.0052 Score=51.12 Aligned_cols=186 Identities=15% Similarity=0.076 Sum_probs=117.0
Q ss_pred CHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHH
Q 019734 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNL 175 (336)
Q Consensus 100 ~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~L 175 (336)
.+..++..|..|.. .|-..-|.--|.+++.. .-+++.+.||..+...|+++.|.+.|....+. +.--+..|.
T Consensus 64 RA~l~fERGvlYDS----lGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNR 139 (297)
T COG4785 64 RAQLLFERGVLYDS----LGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNR 139 (297)
T ss_pred HHHHHHHhcchhhh----hhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcc
Confidence 55667777777766 35566667777777766 57889999999999999999999999998876 455667776
Q ss_pred HHHHHH----HHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHCCC--HHHHHHHHHHHHcCC
Q 019734 176 GISYLQ----EEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGY--VRAMYNTSLCYSFGE 247 (336)
Q Consensus 176 g~~~~~----~~A~~~~~ka~~~--~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~lg~~~~~~~ 247 (336)
|..+.. ..|..-|.+--.. .+|- ..| .+|.... .-|+.+|...+..-.+..+ -..++-++..+ |.
T Consensus 140 gi~~YY~gR~~LAq~d~~~fYQ~D~~DPf--R~L-WLYl~E~--k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yL--gk 212 (297)
T COG4785 140 GIALYYGGRYKLAQDDLLAFYQDDPNDPF--RSL-WLYLNEQ--KLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYL--GK 212 (297)
T ss_pred ceeeeecCchHhhHHHHHHHHhcCCCChH--HHH-HHHHHHh--hCCHHHHHHHHHHHHHhccHhhhhHHHHHHHH--hh
Confidence 666554 5555555554333 3331 111 1222111 5678888876654444433 23333333322 21
Q ss_pred CCcccHHHHHHHHHHHHHc------CCHHHHHHHHHHhhccCCHHHHHHHHHHHHHcC
Q 019734 248 GLPLSHRQARKWMKRAADC------GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAG 299 (336)
Q Consensus 248 g~~~~~~~A~~~~~~a~~~------~~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~ 299 (336)
- ..+...+-...-... --.+.++.||..|...|+.++|...|+.|+...
T Consensus 213 i---S~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 213 I---SEETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred c---cHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 1 233333322222221 125678999999999999999999999999865
No 171
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=97.83 E-value=0.0014 Score=58.30 Aligned_cols=188 Identities=20% Similarity=0.160 Sum_probs=108.5
Q ss_pred HHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc----CCH----HHHHHHHHHHhcCCCHHHHHHHHHHHHHc------C
Q 019734 102 MVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR----GST----LAMVDAGLMYWEMDKKEAAISLYRQAAVL------G 167 (336)
Q Consensus 102 ~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~----~~~----~a~~~lg~~~~~~~~~~~A~~~~~~a~~~------~ 167 (336)
.++..+|.++.- ..-+++++++|++|.+. +++ ..+..||.++...+|+++|..+..+|++. +
T Consensus 123 q~~l~~~~Ahlg----ls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~ 198 (518)
T KOG1941|consen 123 QVSLSMGNAHLG----LSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLK 198 (518)
T ss_pred hhhhhHHHHhhh----HHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcC
Confidence 334445554443 34566777777777654 222 35666777777777777777777776543 3
Q ss_pred CHHHH------HHHHHHHHH----HHHHHHHHHH----HHcCC----HHHHHHHHHHHhcCCCCccCHHHHHHHHHHHH-
Q 019734 168 DPAGQ------FNLGISYLQ----EEAVKLLYQA----SIAGH----VRAQYQLALCLHRGRGVDFNLQEAARWYLRAA- 228 (336)
Q Consensus 168 ~~~a~------~~Lg~~~~~----~~A~~~~~ka----~~~~~----~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~- 228 (336)
+..+. +.++..+.. ..|.++.+.| +..|+ +..+.-+|++|.. .+|.+.|..-|+.|-
T Consensus 199 d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~----~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 199 DWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRS----RGDLERAFRRYEQAMG 274 (518)
T ss_pred chhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHh----cccHhHHHHHHHHHHH
Confidence 43333 233333322 4455555544 33443 4556778888887 788888888888773
Q ss_pred ---HC----CCHHHHHHHHHHHHcCCCC-cccHHHHHHHHHHHHHc----CCH----HHHHHHHHHhhccCCHHHHHHHH
Q 019734 229 ---EG----GYVRAMYNTSLCYSFGEGL-PLSHRQARKWMKRAADC----GHG----KAQLEHGLGLFTEGEMMKAVVYL 292 (336)
Q Consensus 229 ---~~----~~~~a~~~lg~~~~~~~g~-~~~~~~A~~~~~~a~~~----~~~----~a~~~lg~~~~~~~~~~~A~~~~ 292 (336)
.. +...++-..+.++...+-. ..--=.|+++-++.++. |.. ..+..|+.+|..+|.-++=...+
T Consensus 275 ~m~~~gdrmgqv~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~IG~K~~vlK~hcrla~iYrs~gl~d~~~~h~ 354 (518)
T KOG1941|consen 275 TMASLGDRMGQVEALDGAAKCLETLRLQNKICNCRALEFNTRLLEVASSIGAKLSVLKLHCRLASIYRSKGLQDELRAHV 354 (518)
T ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccchhHHHHHH
Confidence 22 3456666777776543210 00113477777777663 332 23467788888888766666666
Q ss_pred HHHHH
Q 019734 293 ELATR 297 (336)
Q Consensus 293 ~~A~~ 297 (336)
.+|-+
T Consensus 355 ~ra~~ 359 (518)
T KOG1941|consen 355 VRAHE 359 (518)
T ss_pred HHHHH
Confidence 66543
No 172
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.81 E-value=0.00058 Score=60.72 Aligned_cols=153 Identities=14% Similarity=0.048 Sum_probs=87.5
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----HHHHHHHHHHHHcCCHHHHHHHHHHHhcCC-C
Q 019734 138 LAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAGQFNLGISYLQ----EEAVKLLYQASIAGHVRAQYQLALCLHRGR-G 212 (336)
Q Consensus 138 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~----~~A~~~~~ka~~~~~~~a~~~lg~~~~~g~-g 212 (336)
......|.++...|++++|+..+.+. ++.++....-.+|+. +.|.+.++...+.++-....+|+..+..-. |
T Consensus 103 ~~~~~~A~i~~~~~~~~~AL~~l~~~---~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g 179 (290)
T PF04733_consen 103 IVQLLAATILFHEGDYEEALKLLHKG---GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATG 179 (290)
T ss_dssp HHHHHHHHHHCCCCHHHHHHCCCTTT---TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHcc---CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhC
Confidence 33444455555556666666655543 445555444444444 555555555544443333444444332100 1
Q ss_pred CccCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhccCCH-HH
Q 019734 213 VDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEM-MK 287 (336)
Q Consensus 213 ~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~-~~ 287 (336)
...+.+|...|+...+. ..+...+.++.++... +++++|...++.++.. ++++...|+..+....|+. +.
T Consensus 180 -~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~----~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~ 254 (290)
T PF04733_consen 180 -GEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQL----GHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEA 254 (290)
T ss_dssp -TTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHC----T-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHH
T ss_pred -chhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHh----CCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhH
Confidence 24677788888776654 3456667777777653 3888888888888764 5577778888877777777 44
Q ss_pred HHHHHHHHHHc
Q 019734 288 AVVYLELATRA 298 (336)
Q Consensus 288 A~~~~~~A~~~ 298 (336)
+.+++.+....
T Consensus 255 ~~~~l~qL~~~ 265 (290)
T PF04733_consen 255 AERYLSQLKQS 265 (290)
T ss_dssp HHHHHHHCHHH
T ss_pred HHHHHHHHHHh
Confidence 55555554443
No 173
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.81 E-value=6.4e-05 Score=51.09 Aligned_cols=60 Identities=18% Similarity=0.165 Sum_probs=44.8
Q ss_pred cCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHH
Q 019734 118 RKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGI 177 (336)
Q Consensus 118 ~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~ 177 (336)
.+++++|+.+|++++.. ++.++++.+|.+|...|++++|...+.+++.. +++..+..++.
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 36888888888888876 57888888888888888888888888888755 33555555443
No 174
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.81 E-value=0.00026 Score=65.23 Aligned_cols=66 Identities=17% Similarity=-0.028 Sum_probs=36.7
Q ss_pred CCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHH---HHHHHHHHhhccCCHHHHHHHHHHHHHcC
Q 019734 230 GGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGK---AQLEHGLGLFTEGEMMKAVVYLELATRAG 299 (336)
Q Consensus 230 ~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~--~~~~---a~~~lg~~~~~~~~~~~A~~~~~~A~~~~ 299 (336)
++++.+++++|..|.... ++++|+.+|+++++. ++.. +++|+|.+|..+|++++|+.+|++|++.+
T Consensus 72 P~~a~a~~NLG~AL~~lG----ryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKG----RVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred CCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 445566666666654322 566666666666554 2222 25666666666666666666666666543
No 175
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.80 E-value=0.0045 Score=58.48 Aligned_cols=204 Identities=15% Similarity=0.039 Sum_probs=135.1
Q ss_pred cCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHH--HcCCHHHHHHHHHHHHH----HHHHHHHH
Q 019734 118 RKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAA--VLGDPAGQFNLGISYLQ----EEAVKLLY 189 (336)
Q Consensus 118 ~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~--~~~~~~a~~~Lg~~~~~----~~A~~~~~ 189 (336)
.+++++|+.--.+.+.. +++.+...--.++...+.|++|+...++-- ..++. -.|.-+.|.+. ++|+..++
T Consensus 25 ~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~-~~fEKAYc~Yrlnk~Dealk~~~ 103 (652)
T KOG2376|consen 25 NGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINS-FFFEKAYCEYRLNKLDEALKTLK 103 (652)
T ss_pred chHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcch-hhHHHHHHHHHcccHHHHHHHHh
Confidence 67899999998888877 577888877777888899999997666532 22222 22667777777 99999998
Q ss_pred HHHHcCCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHCCCH--HHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH--
Q 019734 190 QASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYV--RAMYNTSLCYSFGEGLPLSHRQARKWMKRAAD-- 265 (336)
Q Consensus 190 ka~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~~~~--~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~-- 265 (336)
.++..+......-|.+++. .++|++|...|+..+..+.. +........- .+ -....++.+....
T Consensus 104 -~~~~~~~~ll~L~AQvlYr----l~~ydealdiY~~L~kn~~dd~d~~~r~nl~a-~~------a~l~~~~~q~v~~v~ 171 (652)
T KOG2376|consen 104 -GLDRLDDKLLELRAQVLYR----LERYDEALDIYQHLAKNNSDDQDEERRANLLA-VA------AALQVQLLQSVPEVP 171 (652)
T ss_pred -cccccchHHHHHHHHHHHH----HhhHHHHHHHHHHHHhcCCchHHHHHHHHHHH-HH------HhhhHHHHHhccCCC
Confidence 5555666677777777777 78999999999999766433 2222222111 10 0111123333322
Q ss_pred cCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHc-------C---cHHHHH-----HHHHHHhhcChhcHHHHHHHHHHhh
Q 019734 266 CGHGKAQLEHGLGLFTEGEMMKAVVYLELATRA-------G---ETAADH-----VKNVILQQLSATSRDRAMLVVDSWR 330 (336)
Q Consensus 266 ~~~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~-------~---~~~a~~-----~~~~~~~~~~~~~~~~a~~~~~~~~ 330 (336)
.+.-+-+||.+.++...|++.+|++.+++|.+. + .++-.. .+...+...-.++.++|..+...++
T Consensus 172 e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i 251 (652)
T KOG2376|consen 172 EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDII 251 (652)
T ss_pred cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 245567799999999999999999999999432 1 122222 2233344445677888888776666
Q ss_pred cCCC
Q 019734 331 AMPS 334 (336)
Q Consensus 331 ~~~~ 334 (336)
+.+|
T Consensus 252 ~~~~ 255 (652)
T KOG2376|consen 252 KRNP 255 (652)
T ss_pred HhcC
Confidence 5544
No 176
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=97.79 E-value=4e-05 Score=45.84 Aligned_cols=34 Identities=41% Similarity=0.733 Sum_probs=19.2
Q ss_pred HHHHHHH--HHHhcCC-CCccCHHHHHHHHHHHHHCC
Q 019734 198 RAQYQLA--LCLHRGR-GVDFNLQEAARWYLRAAEGG 231 (336)
Q Consensus 198 ~a~~~lg--~~~~~g~-g~~~~~~~A~~~~~~a~~~~ 231 (336)
+|++.|| .+|..|. |+.+|.++|+.||++|++.|
T Consensus 2 ~A~~~lg~~~~~~~g~~g~~~d~~~A~~~~~~Aa~~g 38 (39)
T PF08238_consen 2 EAQYNLGMYYMYYNGKGGVPKDYEKAFKWYEKAAEQG 38 (39)
T ss_dssp HHHHHHHHHHHHHHTSTSSCHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHhhhhccCCccccccchHHHHHHHHHcc
Confidence 4555555 5555555 45555566666665555544
No 177
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.78 E-value=0.004 Score=60.99 Aligned_cols=144 Identities=17% Similarity=0.074 Sum_probs=89.6
Q ss_pred HHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----HHHHHHHHHHHH----------------------cCCHH
Q 019734 145 LMYWEMDKKEAAISLYRQAAVLGDPAGQFNLGISYLQ----EEAVKLLYQASI----------------------AGHVR 198 (336)
Q Consensus 145 ~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~----~~A~~~~~ka~~----------------------~~~~~ 198 (336)
.+|...|..++|++.-+.--...--..+++.+.-+.. +.|++||+|+-. ..++.
T Consensus 834 KlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~ 913 (1416)
T KOG3617|consen 834 KLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDES 913 (1416)
T ss_pred HHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchH
Confidence 3444445555554432211111123345555555544 889999998621 13455
Q ss_pred HHHHHHHHHhcCCCCccCHHHHHHHHHHHH-----------------------HCCCHHHHHHHHHHHHcCCCCcccHHH
Q 019734 199 AQYQLALCLHRGRGVDFNLQEAARWYLRAA-----------------------EGGYVRAMYNTSLCYSFGEGLPLSHRQ 255 (336)
Q Consensus 199 a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~-----------------------~~~~~~a~~~lg~~~~~~~g~~~~~~~ 255 (336)
-+..+|..++. .|+.+.|+.+|.+|- +.|+-.|+|.||..|... +++.+
T Consensus 914 L~~WWgqYlES----~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~----g~v~~ 985 (1416)
T KOG3617|consen 914 LYSWWGQYLES----VGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYEND----GDVVK 985 (1416)
T ss_pred HHHHHHHHHhc----ccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhh----HHHHH
Confidence 56778888877 789999998888542 347889999999999653 38999
Q ss_pred HHHHHHHHHHc----------CCHHHHHHH------------HHHhhccC-CHHHHHHHHHHHH
Q 019734 256 ARKWMKRAADC----------GHGKAQLEH------------GLGLFTEG-EMMKAVVYLELAT 296 (336)
Q Consensus 256 A~~~~~~a~~~----------~~~~a~~~l------------g~~~~~~~-~~~~A~~~~~~A~ 296 (336)
|+.+|.+|-.- +..+-..|| +..|.+.| +.++|+..|.+|-
T Consensus 986 Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAG 1049 (1416)
T KOG3617|consen 986 AVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAG 1049 (1416)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhc
Confidence 99999998541 212222222 33344555 8888888888763
No 178
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=97.75 E-value=0.0048 Score=63.57 Aligned_cols=171 Identities=13% Similarity=0.002 Sum_probs=69.6
Q ss_pred CHHHHHHHHHHHHHcCC-HHHHHHHHHHHHH----HHHHHHHHHHHHc-C-CHHHHHHHHHHHhcCCCCccCHHHHHHHH
Q 019734 152 KKEAAISLYRQAAVLGD-PAGQFNLGISYLQ----EEAVKLLYQASIA-G-HVRAQYQLALCLHRGRGVDFNLQEAARWY 224 (336)
Q Consensus 152 ~~~~A~~~~~~a~~~~~-~~a~~~Lg~~~~~----~~A~~~~~ka~~~-~-~~~a~~~lg~~~~~g~g~~~~~~~A~~~~ 224 (336)
.-+.-.+.|.+|.+--+ ...+..|..+|.. ++|.++|+.-++. + ....|..+|..+.. ..+-+.|...+
T Consensus 1512 ~eesl~kVFeRAcqycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~----~ne~~aa~~lL 1587 (1710)
T KOG1070|consen 1512 TEESLKKVFERACQYCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLR----QNEAEAARELL 1587 (1710)
T ss_pred cHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhc----ccHHHHHHHHH
Confidence 33344444444444422 2333444444443 4444444444433 1 33444444444443 23334444444
Q ss_pred HHHHHC----CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcC--CHHHHHHHHHHhhccCCHHHHHHHHHHHHHc
Q 019734 225 LRAAEG----GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCG--HGKAQLEHGLGLFTEGEMMKAVVYLELATRA 298 (336)
Q Consensus 225 ~~a~~~----~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~ 298 (336)
++|+.- .+.+-.-..+.+-++ .| |.+.+...|+-.+... ..+.|.-+...-...|+.+.....|+++++.
T Consensus 1588 ~rAL~~lPk~eHv~~IskfAqLEFk-~G---DaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l 1663 (1710)
T KOG1070|consen 1588 KRALKSLPKQEHVEFISKFAQLEFK-YG---DAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIEL 1663 (1710)
T ss_pred HHHHhhcchhhhHHHHHHHHHHHhh-cC---CchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhc
Confidence 444321 123333333333221 11 4444444444433321 2233333333333455666666666666654
Q ss_pred C--cHHHHHHHHHHHh----hcChhcHHHHHHHHHHhh
Q 019734 299 G--ETAADHVKNVILQ----QLSATSRDRAMLVVDSWR 330 (336)
Q Consensus 299 ~--~~~a~~~~~~~~~----~~~~~~~~~a~~~~~~~~ 330 (336)
+ ...+.......+. +......+..+..+.++.
T Consensus 1664 ~l~~kkmKfffKkwLeyEk~~Gde~~vE~VKarA~EYv 1701 (1710)
T KOG1070|consen 1664 KLSIKKMKFFFKKWLEYEKSHGDEKNVEYVKARAKEYV 1701 (1710)
T ss_pred CCChhHhHHHHHHHHHHHHhcCchhhHHHHHHHHHHHH
Confidence 3 2233333332222 223344455555555544
No 179
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.74 E-value=0.00056 Score=52.07 Aligned_cols=92 Identities=20% Similarity=0.165 Sum_probs=55.2
Q ss_pred cCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcCC------HHHHHHHHHHHh
Q 019734 75 SFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGS------TLAMVDAGLMYW 148 (336)
Q Consensus 75 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~~~------~~a~~~lg~~~~ 148 (336)
.-..|++..|++.+.+.+.-.|. ++.++.+.+..+.. .++.++|+.-+.+|+++.. -.++.+.|.+|.
T Consensus 53 laE~g~Ld~AlE~F~qal~l~P~--raSayNNRAQa~RL----q~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyR 126 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCLAPE--RASAYNNRAQALRL----QGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYR 126 (175)
T ss_pred HHhccchHHHHHHHHHHHHhccc--chHhhccHHHHHHH----cCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHH
Confidence 34556666666666666666655 56666666666555 4566666666666666521 135556666666
Q ss_pred cCCCHHHHHHHHHHHHHcCCHHHH
Q 019734 149 EMDKKEAAISLYRQAAVLGDPAGQ 172 (336)
Q Consensus 149 ~~~~~~~A~~~~~~a~~~~~~~a~ 172 (336)
..|+-+.|+.-|..|++.|.+-+-
T Consensus 127 l~g~dd~AR~DFe~AA~LGS~FAr 150 (175)
T KOG4555|consen 127 LLGNDDAARADFEAAAQLGSKFAR 150 (175)
T ss_pred HhCchHHHHHhHHHHHHhCCHHHH
Confidence 666666666666666666555443
No 180
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.70 E-value=0.0013 Score=60.75 Aligned_cols=112 Identities=15% Similarity=0.124 Sum_probs=81.3
Q ss_pred hHHHHHHHHhcCCChhHHhhhHHHHHHHHHhCCCC--------CHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--
Q 019734 65 PFDVLNKIAASFTLPQLRAASLVCKSWNDALRPLR--------EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR-- 134 (336)
Q Consensus 65 ~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~-- 134 (336)
+...+-+....|..|+++.|..+...--- ....| .-.++.+||-|+++ .+.+.-+..+|.+|++.
T Consensus 240 ~~~l~LKsq~eY~~gn~~kA~KlL~~sni-~~~~g~~~T~q~~~cif~NNlGcIh~~----~~~y~~~~~~F~kAL~N~c 314 (696)
T KOG2471|consen 240 SMALLLKSQLEYAHGNHPKAMKLLLVSNI-HKEAGGTITPQLSSCIFNNNLGCIHYQ----LGCYQASSVLFLKALRNSC 314 (696)
T ss_pred cHHHHHHHHHHHHhcchHHHHHHHHhccc-ccccCccccchhhhheeecCcceEeee----hhhHHHHHHHHHHHHHHHH
Confidence 34555666667888999999643322110 11111 33355678888777 57888999999999851
Q ss_pred -----C-------------CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHH
Q 019734 135 -----G-------------STLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQ 181 (336)
Q Consensus 135 -----~-------------~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~ 181 (336)
| .-+..|++|..|...|++-.|.++|.+++.. .+|..|..|+.+..-
T Consensus 315 ~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 315 SQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIM 381 (696)
T ss_pred HHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 2 2367899999999999999999999999876 789999999888765
No 181
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.70 E-value=0.017 Score=48.93 Aligned_cols=18 Identities=6% Similarity=0.021 Sum_probs=9.2
Q ss_pred hhccCCHHHHHHHHHHHH
Q 019734 279 LFTEGEMMKAVVYLELAT 296 (336)
Q Consensus 279 ~~~~~~~~~A~~~~~~A~ 296 (336)
|.-..|+..|..+|+.-.
T Consensus 200 ~L~~~Dyv~aekc~r~~~ 217 (308)
T KOG1585|consen 200 YLYAHDYVQAEKCYRDCS 217 (308)
T ss_pred HhhHHHHHHHHHHhcchh
Confidence 333445555555555543
No 182
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.66 E-value=0.0012 Score=59.65 Aligned_cols=89 Identities=12% Similarity=0.095 Sum_probs=57.6
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHH----HHHHHHHHHHHHc--CCHHHHHHHHHHHhc
Q 019734 138 LAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQ----EEAVKLLYQASIA--GHVRAQYQLALCLHR 209 (336)
Q Consensus 138 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~----~~A~~~~~ka~~~--~~~~a~~~lg~~~~~ 209 (336)
.++.+|+.+|...+++.+|+.+..+++.. +|+.|+|.-|.++.. +.|+..|+++++. ++..+...|..|-..
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k 337 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQK 337 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 34567777777777777777777777644 677777777777776 7777777777654 566666666666554
Q ss_pred CCCCccCHHHHHHHHHHHHH
Q 019734 210 GRGVDFNLQEAARWYLRAAE 229 (336)
Q Consensus 210 g~g~~~~~~~A~~~~~~a~~ 229 (336)
- .....+..+.|.+...
T Consensus 338 ~---~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 338 I---REYEEKEKKMYANMFA 354 (397)
T ss_pred H---HHHHHHHHHHHHHHhh
Confidence 1 1223344566666543
No 183
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.65 E-value=0.022 Score=47.97 Aligned_cols=139 Identities=20% Similarity=0.214 Sum_probs=89.9
Q ss_pred CCHHHHHHHHHHHHHc----C---C-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHc----CC----HHHHHHHHHHHHH-
Q 019734 119 KNLDKALDSFLKGAAR----G---S-TLAMVDAGLMYWEMDKKEAAISLYRQAAVL----GD----PAGQFNLGISYLQ- 181 (336)
Q Consensus 119 ~~~~~A~~~~~~A~~~----~---~-~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----~~----~~a~~~Lg~~~~~- 181 (336)
+++..|-..|.+|+.. + + ...+...+.+| +..++++|+.++.++++. |. +.-+..||.+|..
T Consensus 48 K~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cy-kk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsd 126 (288)
T KOG1586|consen 48 KNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCY-KKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESD 126 (288)
T ss_pred HhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHh-hccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhh
Confidence 5777777777777753 2 2 33445566666 456999999999999975 32 2334678888877
Q ss_pred ----HHHHHHHHHHHHc---CCH-----HHHHHHHHHHhcCCCCccCHHHHHHHHHHHHH--CCCH-------HHHHHHH
Q 019734 182 ----EEAVKLLYQASIA---GHV-----RAQYQLALCLHRGRGVDFNLQEAARWYLRAAE--GGYV-------RAMYNTS 240 (336)
Q Consensus 182 ----~~A~~~~~ka~~~---~~~-----~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~--~~~~-------~a~~~lg 240 (336)
++|+.+|++|.+- ... ..+...+..-.. .++|.+|+..|++.+. .++. .-.+.-|
T Consensus 127 l~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~----leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAg 202 (288)
T KOG1586|consen 127 LQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQ----LEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAG 202 (288)
T ss_pred HHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHH
Confidence 9999999999873 222 223444444334 7899999999998754 2433 2345667
Q ss_pred HHHHcCCCCcccHHHHHHHHHHHHHc
Q 019734 241 LCYSFGEGLPLSHRQARKWMKRAADC 266 (336)
Q Consensus 241 ~~~~~~~g~~~~~~~A~~~~~~a~~~ 266 (336)
.|++.. .|.--+...+++-.+.
T Consensus 203 LChl~~----~D~v~a~~ALeky~~~ 224 (288)
T KOG1586|consen 203 LCHLCK----ADEVNAQRALEKYQEL 224 (288)
T ss_pred HHhHhc----ccHHHHHHHHHHHHhc
Confidence 777542 2454555555554444
No 184
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.65 E-value=0.00032 Score=48.32 Aligned_cols=63 Identities=13% Similarity=0.219 Sum_probs=50.4
Q ss_pred HHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHH
Q 019734 108 GKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFN 174 (336)
Q Consensus 108 g~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~ 174 (336)
..+|.. .+++++|+.++++++.. .++..++.+|.++...|++++|+..|.++++. +++.+...
T Consensus 2 ~~~~~~----~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~ 68 (73)
T PF13371_consen 2 KQIYLQ----QEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARAL 68 (73)
T ss_pred HHHHHh----CCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHH
Confidence 345555 58999999999999887 47888899999999999999999999998865 45554443
No 185
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.64 E-value=0.001 Score=60.08 Aligned_cols=63 Identities=19% Similarity=0.172 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhccCCHHHHHHHHHHHHHcC
Q 019734 233 VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAG 299 (336)
Q Consensus 233 ~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~ 299 (336)
..++.||+.||.+.. ++.+|+.+-.+++.. ++..+.|.-|.++...|+++.|+..|++++...
T Consensus 257 ~~~~lNlA~c~lKl~----~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~ 321 (397)
T KOG0543|consen 257 LACHLNLAACYLKLK----EYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLE 321 (397)
T ss_pred HHHhhHHHHHHHhhh----hHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC
Confidence 345678888887644 777888888888764 667788888888888888888888888887754
No 186
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.63 E-value=0.029 Score=48.21 Aligned_cols=118 Identities=8% Similarity=-0.065 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHcC-CCCcccHHHHHHHHHHHHHcCC--HHHHHHHHHHhhccCCHHHHHHHHH
Q 019734 217 LQEAARWYLRAAEGGYVRAMYNTSLCYSFG-EGLPLSHRQARKWMKRAADCGH--GKAQLEHGLGLFTEGEMMKAVVYLE 293 (336)
Q Consensus 217 ~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~-~g~~~~~~~A~~~~~~a~~~~~--~~a~~~lg~~~~~~~~~~~A~~~~~ 293 (336)
.+-|..-.++..+.++-.....|+..|..- .|.. ....|...|+.-.++-. +....-.+.++..++++++|...++
T Consensus 153 ~d~A~~~lk~mq~ided~tLtQLA~awv~la~gge-k~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~ 231 (299)
T KOG3081|consen 153 FDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGE-KIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLE 231 (299)
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHHHhccch-hhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHH
Confidence 344444444444444433344444444332 1111 25555555555555322 2223334445555566666666666
Q ss_pred HHHHcCcHH--HHHHHHHHHhhcChhcHHHHHHHHHHhhcCCCCC
Q 019734 294 LATRAGETA--ADHVKNVILQQLSATSRDRAMLVVDSWRAMPSLH 336 (336)
Q Consensus 294 ~A~~~~~~~--a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 336 (336)
.|+...+.+ ...++-....+ .+.+.+-......+++..+|+|
T Consensus 232 eaL~kd~~dpetL~Nliv~a~~-~Gkd~~~~~r~l~QLk~~~p~h 275 (299)
T KOG3081|consen 232 EALDKDAKDPETLANLIVLALH-LGKDAEVTERNLSQLKLSHPEH 275 (299)
T ss_pred HHHhccCCCHHHHHHHHHHHHH-hCCChHHHHHHHHHHHhcCCcc
Confidence 665543322 22222222221 2222223333555555555555
No 187
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.63 E-value=0.055 Score=50.21 Aligned_cols=245 Identities=14% Similarity=0.049 Sum_probs=161.5
Q ss_pred CChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHH-----HHHHHHcC--CHHHHHHHHHHHhc
Q 019734 77 TLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDS-----FLKGAARG--STLAMVDAGLMYWE 149 (336)
Q Consensus 77 ~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~-----~~~A~~~~--~~~a~~~lg~~~~~ 149 (336)
....++.|..+|+-.++..|. +.+.-+|.-=..+....|...-.+.++-. |++-+..+ |-++|+.+-.+-..
T Consensus 256 ~qkE~ERar~iykyAld~~pk-~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~ 334 (677)
T KOG1915|consen 256 RQKEYERARFIYKYALDHIPK-GRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEES 334 (677)
T ss_pred HHHHHHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHh
Confidence 335566666667766666655 34555554444444433444445555433 44444443 67899999999988
Q ss_pred CCCHHHHHHHHHHHHHcCCHH---------HHHHHHHHHHH-------HHHHHHHHHHHHcC------CHHHHHHHHHHH
Q 019734 150 MDKKEAAISLYRQAAVLGDPA---------GQFNLGISYLQ-------EEAVKLLYQASIAG------HVRAQYQLALCL 207 (336)
Q Consensus 150 ~~~~~~A~~~~~~a~~~~~~~---------a~~~Lg~~~~~-------~~A~~~~~ka~~~~------~~~a~~~lg~~~ 207 (336)
.|+.+.-.+.|.+|+..-.|. .+..+-.+++. +.+.+.|+..++.- .+..+...+...
T Consensus 335 ~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~fe 414 (677)
T KOG1915|consen 335 VGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFE 414 (677)
T ss_pred cCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHH
Confidence 999999999999999663221 11222222222 78888898888852 455666677766
Q ss_pred hcCCCCccCHHHHHHHHHHHHHCCC----HHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCCHH--HHHHHHHHhhc
Q 019734 208 HRGRGVDFNLQEAARWYLRAAEGGY----VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGK--AQLEHGLGLFT 281 (336)
Q Consensus 208 ~~g~g~~~~~~~A~~~~~~a~~~~~----~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~~~~~--a~~~lg~~~~~ 281 (336)
.. ..|...|...+-.|+-.-. ...+..|-.-+ ++++.....|++-++-++.. ++...|.+-..
T Consensus 415 IR----q~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL-------~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~ 483 (677)
T KOG1915|consen 415 IR----QLNLTGARKILGNAIGKCPKDKLFKGYIELELQL-------REFDRCRKLYEKFLEFSPENCYAWSKYAELETS 483 (677)
T ss_pred HH----HcccHHHHHHHHHHhccCCchhHHHHHHHHHHHH-------hhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHH
Confidence 66 6788899998888865422 22333332222 28899999999999865544 44556666667
Q ss_pred cCCHHHHHHHHHHHHHcCcHHH--HHHHHHHHhhcChhcHHHHHHHHHHhhcCC
Q 019734 282 EGEMMKAVVYLELATRAGETAA--DHVKNVILQQLSATSRDRAMLVVDSWRAMP 333 (336)
Q Consensus 282 ~~~~~~A~~~~~~A~~~~~~~a--~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 333 (336)
+||.+.|...|+.|+....-+. ......+-...+.++..++..+...+++..
T Consensus 484 LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt 537 (677)
T KOG1915|consen 484 LGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRT 537 (677)
T ss_pred hhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc
Confidence 9999999999999998754332 223355556667888899999988887654
No 188
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.63 E-value=0.0019 Score=49.23 Aligned_cols=87 Identities=17% Similarity=0.111 Sum_probs=62.4
Q ss_pred HHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCH------HHHHHHHHHH
Q 019734 108 GKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDP------AGQFNLGISY 179 (336)
Q Consensus 108 g~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~------~a~~~Lg~~~ 179 (336)
|.+...+ ++++.|++.|.+++.+ ..+.++++.+..+.-.|+.++|+.-+.+|++...+ .++...|.+|
T Consensus 50 ~valaE~----g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~ly 125 (175)
T KOG4555|consen 50 AIALAEA----GDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLY 125 (175)
T ss_pred HHHHHhc----cchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHH
Confidence 5666664 8999999999999887 57899999999999999999999999999887222 3444455555
Q ss_pred HH----HHHHHHHHHHHHcCCHH
Q 019734 180 LQ----EEAVKLLYQASIAGHVR 198 (336)
Q Consensus 180 ~~----~~A~~~~~ka~~~~~~~ 198 (336)
.. +.|..-|+.|+++|.+-
T Consensus 126 Rl~g~dd~AR~DFe~AA~LGS~F 148 (175)
T KOG4555|consen 126 RLLGNDDAARADFEAAAQLGSKF 148 (175)
T ss_pred HHhCchHHHHHhHHHHHHhCCHH
Confidence 43 44555555555444443
No 189
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.61 E-value=0.0013 Score=56.59 Aligned_cols=93 Identities=18% Similarity=0.055 Sum_probs=77.1
Q ss_pred HHHHHHHHhcCCCCccCHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc-----CCH
Q 019734 200 QYQLALCLHRGRGVDFNLQEAARWYLRAAEGG-----YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC-----GHG 269 (336)
Q Consensus 200 ~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~~-----~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~-----~~~ 269 (336)
.|+.+.-+.. .+||..|..-|..-++.. -++|+|+||.++.. .++++.|...|..++.. .-+
T Consensus 144 ~Y~~A~~~~k----sgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~----qg~y~~Aa~~f~~~~k~~P~s~KAp 215 (262)
T COG1729 144 LYNAALDLYK----SGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYA----QGDYEDAAYIFARVVKDYPKSPKAP 215 (262)
T ss_pred HHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHh----cccchHHHHHHHHHHHhCCCCCCCh
Confidence 5666655555 688999999999988753 48999999999965 33999999999999873 347
Q ss_pred HHHHHHHHHhhccCCHHHHHHHHHHHHHcCc
Q 019734 270 KAQLEHGLGLFTEGEMMKAVVYLELATRAGE 300 (336)
Q Consensus 270 ~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~~ 300 (336)
++++.||.+..+.|+.++|+..|++.+..-+
T Consensus 216 dallKlg~~~~~l~~~d~A~atl~qv~k~YP 246 (262)
T COG1729 216 DALLKLGVSLGRLGNTDEACATLQQVIKRYP 246 (262)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC
Confidence 8999999999999999999999999988643
No 190
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.61 E-value=0.014 Score=52.02 Aligned_cols=168 Identities=13% Similarity=0.042 Sum_probs=111.3
Q ss_pred cCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHH----HHHHHHH
Q 019734 118 RKNLDKALDSFLKGAARGS---TLAMVDAGLMYWEMDKKEAAISLYRQAAVLGD--PAGQFNLGISYLQ----EEAVKLL 188 (336)
Q Consensus 118 ~~~~~~A~~~~~~A~~~~~---~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~--~~a~~~Lg~~~~~----~~A~~~~ 188 (336)
.+|++.|+.+++-....+. .....-+|.+++..||+++|...|.-+.+.++ .+...+|+-++.. .+|...-
T Consensus 35 ~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~ 114 (557)
T KOG3785|consen 35 NRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIA 114 (557)
T ss_pred cccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHH
Confidence 3799999999998876643 34566789999999999999999999887754 4566777777765 5555555
Q ss_pred HHHHHcC-CHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcC
Q 019734 189 YQASIAG-HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCG 267 (336)
Q Consensus 189 ~ka~~~~-~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~~ 267 (336)
.++.+.- -.+-+++|+.-+. |.+ -+.-|...+ ++..+-+..|+.++.-.. .+.+|+..|++.+.-+
T Consensus 115 ~ka~k~pL~~RLlfhlahkln-------dEk-~~~~fh~~L-qD~~EdqLSLAsvhYmR~----HYQeAIdvYkrvL~dn 181 (557)
T KOG3785|consen 115 EKAPKTPLCIRLLFHLAHKLN-------DEK-RILTFHSSL-QDTLEDQLSLASVHYMRM----HYQEAIDVYKRVLQDN 181 (557)
T ss_pred hhCCCChHHHHHHHHHHHHhC-------cHH-HHHHHHHHH-hhhHHHHHhHHHHHHHHH----HHHHHHHHHHHHHhcC
Confidence 5543321 1234555555432 222 222333322 223344555665553322 6889999999987643
Q ss_pred C--HHHHHHHHHHhhccCCHHHHHHHHHHHHHc
Q 019734 268 H--GKAQLEHGLGLFTEGEMMKAVVYLELATRA 298 (336)
Q Consensus 268 ~--~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~ 298 (336)
. ...-.+++.||++..-++-+.+.++--+++
T Consensus 182 ~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q 214 (557)
T KOG3785|consen 182 PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ 214 (557)
T ss_pred hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh
Confidence 2 222367889999999999999998888875
No 191
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.55 E-value=0.00019 Score=44.27 Aligned_cols=41 Identities=24% Similarity=0.291 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHH
Q 019734 137 TLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGI 177 (336)
Q Consensus 137 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~ 177 (336)
|.+++.+|..|...|++++|+.+|+++++. ++++++..||.
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 356777888888888888888888887754 67777777764
No 192
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.52 E-value=0.027 Score=45.87 Aligned_cols=123 Identities=14% Similarity=-0.014 Sum_probs=86.1
Q ss_pred CCHHHHHHHHHHHHHc-CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHH----HHHHHHHHH
Q 019734 119 KNLDKALDSFLKGAAR-GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL---GDPAGQFNLGISYLQ----EEAVKLLYQ 190 (336)
Q Consensus 119 ~~~~~A~~~~~~A~~~-~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~Lg~~~~~----~~A~~~~~k 190 (336)
-|++..+.-..+.... ....-.+.||..+.+.|++.+|+..|++++.- +++..+..+++.... ..|...+++
T Consensus 70 ldP~R~~Rea~~~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~ 149 (251)
T COG4700 70 LDPERHLREATEELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLED 149 (251)
T ss_pred cChhHHHHHHHHHHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 3555554444444443 24456788999999999999999999999864 778777777777766 666666777
Q ss_pred HHHc----CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHc
Q 019734 191 ASIA----GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG-GYVRAMYNTSLCYSF 245 (336)
Q Consensus 191 a~~~----~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~-~~~~a~~~lg~~~~~ 245 (336)
..+- ..++....+|..|.- .+.+..|...|+.+++- ..+.+....+.++..
T Consensus 150 l~e~~pa~r~pd~~Ll~aR~laa----~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~La~ 205 (251)
T COG4700 150 LMEYNPAFRSPDGHLLFARTLAA----QGKYADAESAFEVAISYYPGPQARIYYAEMLAK 205 (251)
T ss_pred HhhcCCccCCCCchHHHHHHHHh----cCCchhHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 6653 256677778888776 57777788888887765 455666666666643
No 193
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.50 E-value=0.00027 Score=47.95 Aligned_cols=64 Identities=6% Similarity=-0.093 Sum_probs=53.3
Q ss_pred CCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcC--CHHHHHHHHH
Q 019734 76 FTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGL 145 (336)
Q Consensus 76 ~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~ 145 (336)
+..|++.+|+..+.++++..|+ +..+.+.||.+|.. .+++++|...++++.... ++..+..++.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~----~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPD--NPEARLLLAQCYLK----QGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTT--SHHHHHHHHHHHHH----TT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 4579999999999999999888 99999999999999 699999999999998763 3555555443
No 194
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.50 E-value=0.0028 Score=58.52 Aligned_cols=105 Identities=21% Similarity=0.127 Sum_probs=68.9
Q ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHH----HHHHHHHHHH
Q 019734 118 RKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQ----EEAVKLLYQA 191 (336)
Q Consensus 118 ~~~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~----~~A~~~~~ka 191 (336)
.++++.|+..|++..+.. +++...++.++...++..+|+..+.+++.. .+.+.+...+..+.. +.|+...+++
T Consensus 182 t~~~~~ai~lle~L~~~~-pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~a 260 (395)
T PF09295_consen 182 TQRYDEAIELLEKLRERD-PEVAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKKA 260 (395)
T ss_pred cccHHHHHHHHHHHHhcC-CcHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 356777777777755443 556666777777777777777777777753 355555556666655 6777777777
Q ss_pred HHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHH
Q 019734 192 SIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRA 227 (336)
Q Consensus 192 ~~~--~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a 227 (336)
++. .+.+.|+.|+.+|.. .+|++.|+..++.+
T Consensus 261 v~lsP~~f~~W~~La~~Yi~----~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 261 VELSPSEFETWYQLAECYIQ----LGDFENALLALNSC 294 (395)
T ss_pred HHhCchhHHHHHHHHHHHHh----cCCHHHHHHHHhcC
Confidence 654 456677777777776 67777777666543
No 195
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.49 E-value=0.078 Score=51.00 Aligned_cols=180 Identities=12% Similarity=0.042 Sum_probs=85.1
Q ss_pred CCHHHHHHHHHHHHHc-------CC-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC------HHHHHHHHHHHHH---
Q 019734 119 KNLDKALDSFLKGAAR-------GS-TLAMVDAGLMYWEMDKKEAAISLYRQAAVLGD------PAGQFNLGISYLQ--- 181 (336)
Q Consensus 119 ~~~~~A~~~~~~A~~~-------~~-~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~------~~a~~~Lg~~~~~--- 181 (336)
++..+-+.-|..|+.. |. ..-+..+|.+|...|+.+.|+..|.+|..-.. ++.|.+-|..-+.
T Consensus 361 ~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~ 440 (835)
T KOG2047|consen 361 GNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHEN 440 (835)
T ss_pred CChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhh
Confidence 4566666666666653 21 23455666666666666666666666664421 2233333322222
Q ss_pred -HHHHHHHHHHHHc-C-------------------CHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHC--CCHHHHHH
Q 019734 182 -EEAVKLLYQASIA-G-------------------HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYN 238 (336)
Q Consensus 182 -~~A~~~~~ka~~~-~-------------------~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~ 238 (336)
+.|+.+.+.|... . ....|..+++..+. .+-++.-...|.+.++. -.+....|
T Consensus 441 ~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs----~gtfestk~vYdriidLriaTPqii~N 516 (835)
T KOG2047|consen 441 FEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEES----LGTFESTKAVYDRIIDLRIATPQIIIN 516 (835)
T ss_pred HHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHH----hccHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 5555555555321 0 01122233333222 23344445555555443 34555555
Q ss_pred HHHHHHcCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHH-------hhccCCHHHHHHHHHHHHHcCcHHHHHH
Q 019734 239 TSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQLEHGLG-------LFTEGEMMKAVVYLELATRAGETAADHV 306 (336)
Q Consensus 239 lg~~~~~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~-------~~~~~~~~~A~~~~~~A~~~~~~~a~~~ 306 (336)
.|..+.... -++++.+.|++.+..-.....+.+=.. -+.....+.|...|++|++.-++..+..
T Consensus 517 yAmfLEeh~----yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKt 587 (835)
T KOG2047|consen 517 YAMFLEEHK----YFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKT 587 (835)
T ss_pred HHHHHHhhH----HHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHH
Confidence 555554322 456666666666554222111111111 1123356666666666666555544433
No 196
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.48 E-value=0.042 Score=45.27 Aligned_cols=211 Identities=21% Similarity=0.156 Sum_probs=134.1
Q ss_pred hhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHhcCCCHH
Q 019734 79 PQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAA----RGSTLAMVDAGLMYWEMDKKE 154 (336)
Q Consensus 79 ~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~----~~~~~a~~~lg~~~~~~~~~~ 154 (336)
+.+..+...+..................++..+.. .+++..++..+..+.. ......+..+|..+...+++.
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLK----LGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYE 112 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHH----cccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHH
Confidence 44445544444444443332235666667777666 4778888888887764 245667777888888888888
Q ss_pred HHHHHHHHHHHc--CCHHHHHHHHH-HHHH----HHHHHHHHHHHHcC-----CHHHHHHHHHHHhcCCCCccCHHHHHH
Q 019734 155 AAISLYRQAAVL--GDPAGQFNLGI-SYLQ----EEAVKLLYQASIAG-----HVRAQYQLALCLHRGRGVDFNLQEAAR 222 (336)
Q Consensus 155 ~A~~~~~~a~~~--~~~~a~~~Lg~-~~~~----~~A~~~~~ka~~~~-----~~~a~~~lg~~~~~g~g~~~~~~~A~~ 222 (336)
+++..+.+++.. .+.......+. ++.. ++|+.+|++++... .......++..+.. .+++..++.
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~a~~ 188 (291)
T COG0457 113 EALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEA----LGRYEEALE 188 (291)
T ss_pred HHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHH----hcCHHHHHH
Confidence 888888888764 33233333333 4444 78888888876632 23344444444444 567888888
Q ss_pred HHHHHHHC--C-CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCC--HHHHHHHHHHhhccCCHHHHHHHHHHHHH
Q 019734 223 WYLRAAEG--G-YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGH--GKAQLEHGLGLFTEGEMMKAVVYLELATR 297 (336)
Q Consensus 223 ~~~~a~~~--~-~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~~~--~~a~~~lg~~~~~~~~~~~A~~~~~~A~~ 297 (336)
.+.++... . .......++..+.... ++.+|...+.+++.... ......++..+...++.+++...+.+++.
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 189 LLEKALKLNPDDDAEALLNLGLLYLKLG----KYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred HHHHHHhhCcccchHHHHHhhHHHHHcc----cHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 88877654 3 3566777777775422 67788888888777543 35566666666666668888888888777
Q ss_pred cCcH
Q 019734 298 AGET 301 (336)
Q Consensus 298 ~~~~ 301 (336)
....
T Consensus 265 ~~~~ 268 (291)
T COG0457 265 LDPD 268 (291)
T ss_pred hCcc
Confidence 6554
No 197
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.43 E-value=0.05 Score=44.84 Aligned_cols=206 Identities=20% Similarity=0.152 Sum_probs=138.0
Q ss_pred CCHHHHHHHHHHHHHcCC----HHHHHHHHHHHhcCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHH----HHHHH
Q 019734 119 KNLDKALDSFLKGAARGS----TLAMVDAGLMYWEMDKKEAAISLYRQAAV----LGDPAGQFNLGISYLQ----EEAVK 186 (336)
Q Consensus 119 ~~~~~A~~~~~~A~~~~~----~~a~~~lg~~~~~~~~~~~A~~~~~~a~~----~~~~~a~~~Lg~~~~~----~~A~~ 186 (336)
.....+...+..+..... .......+..+...+++..++..+..... ......++.+|..+.. ..++.
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 456677777777776632 57778888888888888888888888764 3556677777777776 67888
Q ss_pred HHHHHHHc--CCHHHHHHHHH-HHhcCCCCccCHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHcCCCCcccHHHHHH
Q 019734 187 LLYQASIA--GHVRAQYQLAL-CLHRGRGVDFNLQEAARWYLRAAEGG-----YVRAMYNTSLCYSFGEGLPLSHRQARK 258 (336)
Q Consensus 187 ~~~ka~~~--~~~~a~~~lg~-~~~~g~g~~~~~~~A~~~~~~a~~~~-----~~~a~~~lg~~~~~~~g~~~~~~~A~~ 258 (336)
.+.++... .........+. ++.. .++++.|...|.+++... .......++..+.. ..+.++++.
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~a~~ 188 (291)
T COG0457 117 LLEKALALDPDPDLAEALLALGALYE----LGDYEEALELYEKALELDPELNELAEALLALGALLEA----LGRYEEALE 188 (291)
T ss_pred HHHHHHcCCCCcchHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHH----hcCHHHHHH
Confidence 88888764 23233444444 5555 688888888888886632 33444555554432 238888888
Q ss_pred HHHHHHHc--C-CHHHHHHHHHHhhccCCHHHHHHHHHHHHHcCcH--HHHHHHHHHHhhcChhcHHHHHHHHHHhhcCC
Q 019734 259 WMKRAADC--G-HGKAQLEHGLGLFTEGEMMKAVVYLELATRAGET--AADHVKNVILQQLSATSRDRAMLVVDSWRAMP 333 (336)
Q Consensus 259 ~~~~a~~~--~-~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~~~--~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 333 (336)
.+.+++.. . .......++..+...+++++|...+..++...+. ........... .....+.+.....+.....
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 266 (291)
T COG0457 189 LLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLL--ELGRYEEALEALEKALELD 266 (291)
T ss_pred HHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHH--HcCCHHHHHHHHHHHHHhC
Confidence 88888875 3 3466788888888888888888888888887654 33333333333 2335666666666655544
Q ss_pred C
Q 019734 334 S 334 (336)
Q Consensus 334 ~ 334 (336)
|
T Consensus 267 ~ 267 (291)
T COG0457 267 P 267 (291)
T ss_pred c
Confidence 4
No 198
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.40 E-value=0.0053 Score=56.74 Aligned_cols=113 Identities=19% Similarity=0.091 Sum_probs=88.1
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----HHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccC
Q 019734 143 AGLMYWEMDKKEAAISLYRQAAVLGDPAGQFNLGISYLQ----EEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFN 216 (336)
Q Consensus 143 lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~----~~A~~~~~ka~~~--~~~~a~~~lg~~~~~g~g~~~~ 216 (336)
|-.++...++++.|+..|++..+.+ |++...|+.++.. .+|+..+.+++.. .+...+...+.++.. .++
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~~-pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~----k~~ 249 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRERD-PEVAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS----KKK 249 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhcC-CcHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh----cCC
Confidence 3344455688999999999977654 6777788888877 8889999998875 367777788888887 788
Q ss_pred HHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHH
Q 019734 217 LQEAARWYLRAAE--GGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAA 264 (336)
Q Consensus 217 ~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~ 264 (336)
++.|+...+++.+ +.+..+|+.|+.+|.... +++.|+..+.-..
T Consensus 250 ~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~----d~e~ALlaLNs~P 295 (395)
T PF09295_consen 250 YELALEIAKKAVELSPSEFETWYQLAECYIQLG----DFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcC----CHHHHHHHHhcCc
Confidence 8999999999865 467888999999997533 8998887776543
No 199
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.38 E-value=0.12 Score=48.09 Aligned_cols=244 Identities=12% Similarity=0.022 Sum_probs=144.9
Q ss_pred ChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHhcCCCHHHH
Q 019734 78 LPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR-GSTLAMVDAGLMYWEMDKKEAA 156 (336)
Q Consensus 78 ~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~-~~~~a~~~lg~~~~~~~~~~~A 156 (336)
.|+...|..++.+|.+-.|+..-...+...-+- -+..+.|...|++-+-. -...++...+..-...|+..-|
T Consensus 154 LgNi~gaRqiferW~~w~P~eqaW~sfI~fElR-------ykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~a 226 (677)
T KOG1915|consen 154 LGNIAGARQIFERWMEWEPDEQAWLSFIKFELR-------YKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALA 226 (677)
T ss_pred hcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHH-------hhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHH
Confidence 366777777777887776553222222222222 25677788888876654 3556677777777778888888
Q ss_pred HHHHHHHHHc-CCH--HHHHHHHHHHHH------HHHHHHHHHHHH----------------------------------
Q 019734 157 ISLYRQAAVL-GDP--AGQFNLGISYLQ------EEAVKLLYQASI---------------------------------- 193 (336)
Q Consensus 157 ~~~~~~a~~~-~~~--~a~~~Lg~~~~~------~~A~~~~~ka~~---------------------------------- 193 (336)
...|.+|++. ++- ...+..+.+... +.|.-.|+-|++
T Consensus 227 R~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~K 306 (677)
T KOG1915|consen 227 RSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGK 306 (677)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhh
Confidence 8888888865 332 222222322222 222222332222
Q ss_pred ----------c--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHCCCHH---------HHHHHHHHHHcCCCCccc
Q 019734 194 ----------A--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVR---------AMYNTSLCYSFGEGLPLS 252 (336)
Q Consensus 194 ----------~--~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~~~~~---------a~~~lg~~~~~~~g~~~~ 252 (336)
. -+-++++.+-.+-.. .+|.+.-.+.|++|+..-.+. .+..+-.++.... ..+|
T Consensus 307 Rk~qYE~~v~~np~nYDsWfdylrL~e~----~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEl-e~ed 381 (677)
T KOG1915|consen 307 RKFQYEKEVSKNPYNYDSWFDYLRLEES----VGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEEL-EAED 381 (677)
T ss_pred hhhHHHHHHHhCCCCchHHHHHHHHHHh----cCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHH-Hhhh
Confidence 1 134556665555555 578888889999986542211 1222222222211 2558
Q ss_pred HHHHHHHHHHHHHcC-----------------------CHHHHHHHHHHh----------------hccCCHHHHHHHHH
Q 019734 253 HRQARKWMKRAADCG-----------------------HGKAQLEHGLGL----------------FTEGEMMKAVVYLE 293 (336)
Q Consensus 253 ~~~A~~~~~~a~~~~-----------------------~~~a~~~lg~~~----------------~~~~~~~~A~~~~~ 293 (336)
.+.+.+.|+.+++.= -..+.-.||.+. ...++++.....|+
T Consensus 382 ~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYE 461 (677)
T KOG1915|consen 382 VERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYE 461 (677)
T ss_pred HHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHH
Confidence 888888888887631 112222233211 12568999999999
Q ss_pred HHHHcCcHHHHHHHHHHHhhcChhcHHHHHHHHHHhhcCC
Q 019734 294 LATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWRAMP 333 (336)
Q Consensus 294 ~A~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 333 (336)
+-++-++.++............-++.|.+..+....++.|
T Consensus 462 kfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp 501 (677)
T KOG1915|consen 462 KFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQP 501 (677)
T ss_pred HHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCc
Confidence 9999998888777776666666677777777777666544
No 200
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.27 E-value=0.059 Score=49.29 Aligned_cols=78 Identities=12% Similarity=0.068 Sum_probs=59.4
Q ss_pred CHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc------CCHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHc---C
Q 019734 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR------GSTLAMVDAGLMYWE---MDKKEAAISLYRQAAVL---G 167 (336)
Q Consensus 100 ~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~------~~~~a~~~lg~~~~~---~~~~~~A~~~~~~a~~~---~ 167 (336)
.++..+.|=..|.. .+|++.-+.+.+..-.. ..+...+.+|..+-+ .||.++|+..+..++.. .
T Consensus 140 s~div~~lllSyRd----iqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~ 215 (374)
T PF13281_consen 140 SPDIVINLLLSYRD----IQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENP 215 (374)
T ss_pred ChhHHHHHHHHhhh----hhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCC
Confidence 56666777777777 68888888888866544 256677788888877 68999999999886644 5
Q ss_pred CHHHHHHHHHHHHH
Q 019734 168 DPAGQFNLGISYLQ 181 (336)
Q Consensus 168 ~~~a~~~Lg~~~~~ 181 (336)
+++.+..+|.+|..
T Consensus 216 ~~d~~gL~GRIyKD 229 (374)
T PF13281_consen 216 DPDTLGLLGRIYKD 229 (374)
T ss_pred ChHHHHHHHHHHHH
Confidence 68888888888875
No 201
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.23 E-value=0.043 Score=46.60 Aligned_cols=183 Identities=20% Similarity=0.217 Sum_probs=118.5
Q ss_pred CHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc-CC-------HHHHHHHHHHHhcCCCHHHHHHHHHHHHH----cC
Q 019734 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR-GS-------TLAMVDAGLMYWEMDKKEAAISLYRQAAV----LG 167 (336)
Q Consensus 100 ~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~-~~-------~~a~~~lg~~~~~~~~~~~A~~~~~~a~~----~~ 167 (336)
-+..+..-+.+|.. .+++++|...+++|++- .+ +.++-..+.+......+.+++.+|++|.. .|
T Consensus 30 aas~yekAAvafRn----Ak~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~G 105 (308)
T KOG1585|consen 30 AASLYEKAAVAFRN----AKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECG 105 (308)
T ss_pred hHHHHHHHHHHHHh----hccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC
Confidence 34445555666666 58999999999999853 22 34556667777777899999999999974 46
Q ss_pred CHH----HHHHHHHHHHH---HHHHHHHHHHHHc---CC--HHH---HHHHHHHHhcCCCCccCHHHHHHHHHHHHH---
Q 019734 168 DPA----GQFNLGISYLQ---EEAVKLLYQASIA---GH--VRA---QYQLALCLHRGRGVDFNLQEAARWYLRAAE--- 229 (336)
Q Consensus 168 ~~~----a~~~Lg~~~~~---~~A~~~~~ka~~~---~~--~~a---~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~--- 229 (336)
.++ ++-.-|.+... ++|++.|++++.. ++ ..+ +-.+++++.. .+.+++|...+.|-..
T Consensus 106 spdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVr----l~kf~Eaa~a~lKe~~~~~ 181 (308)
T KOG1585|consen 106 SPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVR----LEKFTEAATAFLKEGVAAD 181 (308)
T ss_pred CcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhh----hHHhhHHHHHHHHhhhHHH
Confidence 654 33444555555 9999999999753 22 223 3445556665 5678888877766421
Q ss_pred ---CCCH--HHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc------CCHHHHHHHHHHhhccCCHHHHHHHHHHH
Q 019734 230 ---GGYV--RAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC------GHGKAQLEHGLGLFTEGEMMKAVVYLELA 295 (336)
Q Consensus 230 ---~~~~--~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~------~~~~a~~~lg~~~~~~~~~~~A~~~~~~A 295 (336)
.-.. .+....-.+|+. ..|+..|...|+..... .+..++-+|-. .++.||.++......-.
T Consensus 182 ~~~~y~~~~k~~va~ilv~L~----~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~-ayd~gD~E~~~kvl~sp 253 (308)
T KOG1585|consen 182 KCDAYNSQCKAYVAAILVYLY----AHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLT-AYDEGDIEEIKKVLSSP 253 (308)
T ss_pred HHhhcccHHHHHHHHHHHHhh----HHHHHHHHHHhcchhcCccccChHHHHHHHHHHH-HhccCCHHHHHHHHcCh
Confidence 1112 223333333433 23999999999998764 23445566655 56789998887776554
No 202
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.23 E-value=0.12 Score=49.76 Aligned_cols=214 Identities=15% Similarity=0.029 Sum_probs=122.7
Q ss_pred CCChhHHhhhHHHHHHHHHhCC---CCC-HHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcC------CHHHHHHHHH
Q 019734 76 FTLPQLRAASLVCKSWNDALRP---LRE-AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG------STLAMVDAGL 145 (336)
Q Consensus 76 ~~~~~~~~a~~~~~~~~~~~~~---~~~-~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~~------~~~a~~~lg~ 145 (336)
+..|+..+-+..|..+.+.-.. .|. ...+..+|..|.. .++++.|...|++|.... -...|.+.|.
T Consensus 358 l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~----~~~l~~aRvifeka~~V~y~~v~dLa~vw~~wae 433 (835)
T KOG2047|consen 358 LYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYEN----NGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAE 433 (835)
T ss_pred hhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHh----cCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHH
Confidence 4455555555555555554221 122 3466778888888 588999999999988763 2566778888
Q ss_pred HHhcCCCHHHHHHHHHHHHHc-CC-----------H--------HHHHHHHHHHHH----HHHHHHHHHHHHc--CCHHH
Q 019734 146 MYWEMDKKEAAISLYRQAAVL-GD-----------P--------AGQFNLGISYLQ----EEAVKLLYQASIA--GHVRA 199 (336)
Q Consensus 146 ~~~~~~~~~~A~~~~~~a~~~-~~-----------~--------~a~~~Lg~~~~~----~~A~~~~~ka~~~--~~~~a 199 (336)
+-....+++.|+.+.++|... .. + ..|..++..... +.-...|.+.+++ -.|..
T Consensus 434 mElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqi 513 (835)
T KOG2047|consen 434 MELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQI 513 (835)
T ss_pred HHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHH
Confidence 877888899999988888632 11 1 112222222221 5555666666665 36677
Q ss_pred HHHHHHHHhcCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHH----cCCCCcccHHHHHHHHHHHHHcCCHHHHH--
Q 019734 200 QYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYS----FGEGLPLSHRQARKWMKRAADCGHGKAQL-- 273 (336)
Q Consensus 200 ~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~----~~~g~~~~~~~A~~~~~~a~~~~~~~a~~-- 273 (336)
..|.|.+++. .+-++++.+.|++.+..=..+..+.+=..|+ ...| ....+.|...|++|++.-++...-
T Consensus 514 i~NyAmfLEe----h~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~ryg-g~klEraRdLFEqaL~~Cpp~~aKti 588 (835)
T KOG2047|consen 514 IINYAMFLEE----HKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYG-GTKLERARDLFEQALDGCPPEHAKTI 588 (835)
T ss_pred HHHHHHHHHh----hHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHhcCCHHHHHHH
Confidence 7777777776 6667777777777665422111111111111 1111 236777777777777743333322
Q ss_pred --HHHHHhhccCCHHHHHHHHHHHHHc
Q 019734 274 --EHGLGLFTEGEMMKAVVYLELATRA 298 (336)
Q Consensus 274 --~lg~~~~~~~~~~~A~~~~~~A~~~ 298 (336)
..+.+-.+.|--..|+..|++|...
T Consensus 589 yLlYA~lEEe~GLar~amsiyerat~~ 615 (835)
T KOG2047|consen 589 YLLYAKLEEEHGLARHAMSIYERATSA 615 (835)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 2222223355556666666665543
No 203
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.19 E-value=0.12 Score=44.32 Aligned_cols=77 Identities=21% Similarity=0.242 Sum_probs=43.6
Q ss_pred CHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CC---H
Q 019734 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG-----STLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GD---P 169 (336)
Q Consensus 100 ~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~~-----~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~---~ 169 (336)
.+.-+|.-|..-.+ .||+++|+.+|++..... ...++..++..++..+++++|+..+.+-+.. ++ .
T Consensus 33 p~~~LY~~g~~~L~----~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~d 108 (254)
T COG4105 33 PASELYNEGLTELQ----KGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNAD 108 (254)
T ss_pred CHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChh
Confidence 34445555555555 366666666666655441 2456666666776667777776666666543 22 3
Q ss_pred HHHHHHHHHHH
Q 019734 170 AGQFNLGISYL 180 (336)
Q Consensus 170 ~a~~~Lg~~~~ 180 (336)
-+++..|.++.
T Consensus 109 Y~~YlkgLs~~ 119 (254)
T COG4105 109 YAYYLKGLSYF 119 (254)
T ss_pred HHHHHHHHHHh
Confidence 34444555444
No 204
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.19 E-value=0.0017 Score=44.65 Aligned_cols=52 Identities=21% Similarity=0.165 Sum_probs=42.9
Q ss_pred cccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhccCCHHHHHHHHHHHHHcCcH
Q 019734 250 PLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGET 301 (336)
Q Consensus 250 ~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~~~ 301 (336)
.+++++|+.++++++.. +++..++..|.++...|++++|...|+++++.++.
T Consensus 8 ~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~ 61 (73)
T PF13371_consen 8 QEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPD 61 (73)
T ss_pred CCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCC
Confidence 34899999999999875 55777788999999999999999999999887653
No 205
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.16 E-value=0.011 Score=46.22 Aligned_cols=84 Identities=12% Similarity=0.141 Sum_probs=61.4
Q ss_pred hHHHHHHHHhcCCChhHHhhhHHHHHHHHHhCCCC-CHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcC-----CHH
Q 019734 65 PFDVLNKIAASFTLPQLRAASLVCKSWNDALRPLR-EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG-----STL 138 (336)
Q Consensus 65 ~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~~-----~~~ 138 (336)
+.++...+...+..|+|.+|+..+..+...-|-.+ -..+...||.+|.. .+++++|+..+++-+++. -+.
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~----~~~y~~A~a~~~rFirLhP~hp~vdY 85 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYK----QGDYEEAIAAYDRFIRLHPTHPNVDY 85 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCCCCccH
Confidence 45667777788888888888877777777766432 35678888888887 578888888888888762 246
Q ss_pred HHHHHHHHHhcCCC
Q 019734 139 AMVDAGLMYWEMDK 152 (336)
Q Consensus 139 a~~~lg~~~~~~~~ 152 (336)
+++..|..++...+
T Consensus 86 a~Y~~gL~~~~~~~ 99 (142)
T PF13512_consen 86 AYYMRGLSYYEQDE 99 (142)
T ss_pred HHHHHHHHHHHHhh
Confidence 77777777766543
No 206
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.15 E-value=0.008 Score=48.63 Aligned_cols=31 Identities=16% Similarity=0.144 Sum_probs=14.2
Q ss_pred HHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhc
Q 019734 81 LRAASLVCKSWNDALRPLREAMVLLRWGKRFKH 113 (336)
Q Consensus 81 ~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~ 113 (336)
++.|...+...+...|. +++++++.|.++.+
T Consensus 7 FE~ark~aea~y~~nP~--DadnL~~WG~ALLE 37 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPL--DADNLTNWGGALLE 37 (186)
T ss_dssp HHHHHHHHHHHHHH-TT---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcH--hHHHHHHHHHHHHH
Confidence 33444444444444444 55555555555544
No 207
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.09 E-value=0.0013 Score=40.42 Aligned_cols=41 Identities=12% Similarity=0.064 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHH
Q 019734 101 AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGL 145 (336)
Q Consensus 101 ~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~ 145 (336)
+.+++.||..|.. .|++++|+++|+++++. +++.++..||.
T Consensus 1 p~~~~~la~~~~~----~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 1 PAAWLALARAYRR----LGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred CHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 3578889999999 68999999999999987 68999988875
No 208
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.09 E-value=0.061 Score=43.87 Aligned_cols=117 Identities=12% Similarity=0.075 Sum_probs=92.6
Q ss_pred CCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc----CCHHH
Q 019734 99 REAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR---GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL----GDPAG 171 (336)
Q Consensus 99 ~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~---~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----~~~~a 171 (336)
+...-.+.||..... .|+..+|..+|++++.- +++..+..++...+..+++..|...+++.-+- ..|..
T Consensus 87 pTvqnr~rLa~al~e----lGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~ 162 (251)
T COG4700 87 PTVQNRYRLANALAE----LGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG 162 (251)
T ss_pred hhHHHHHHHHHHHHH----hhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc
Confidence 345667888888888 58999999999999875 68888899999999999999999999998765 46778
Q ss_pred HHHHHHHHHH----HHHHHHHHHHHHc-CCHHHHHHHHHHHhcCCCCccCHHHHHHH
Q 019734 172 QFNLGISYLQ----EEAVKLLYQASIA-GHVRAQYQLALCLHRGRGVDFNLQEAARW 223 (336)
Q Consensus 172 ~~~Lg~~~~~----~~A~~~~~ka~~~-~~~~a~~~lg~~~~~g~g~~~~~~~A~~~ 223 (336)
+..+|..|.. ..|...|+.+++- ..+.+-...+.++.. .++..+|..-
T Consensus 163 ~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~La~----qgr~~ea~aq 215 (251)
T COG4700 163 HLLFARTLAAQGKYADAESAFEVAISYYPGPQARIYYAEMLAK----QGRLREANAQ 215 (251)
T ss_pred hHHHHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHHHHHHHH----hcchhHHHHH
Confidence 8889999887 7788889888875 566777777777765 4444444433
No 209
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.07 E-value=0.39 Score=48.02 Aligned_cols=227 Identities=15% Similarity=0.017 Sum_probs=142.4
Q ss_pred CChHHHHHHHHhcCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHH
Q 019734 63 SLPFDVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAM 140 (336)
Q Consensus 63 ~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~ 140 (336)
.+++..+.-+...+..+++..|...+.+.+++.|+...+.++ -|....+ .+..++|..+++.-... .+...+
T Consensus 7 a~~err~rpi~d~ld~~qfkkal~~~~kllkk~Pn~~~a~vL--kaLsl~r----~gk~~ea~~~Le~~~~~~~~D~~tL 80 (932)
T KOG2053|consen 7 AMSERRLRPIYDLLDSSQFKKALAKLGKLLKKHPNALYAKVL--KALSLFR----LGKGDEALKLLEALYGLKGTDDLTL 80 (932)
T ss_pred ccHHHHHhHHHHHhhhHHHHHHHHHHHHHHHHCCCcHHHHHH--HHHHHHH----hcCchhHHHHHhhhccCCCCchHHH
Confidence 456677888888899999999999999999998874444444 4555555 46788888888754443 466777
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHH--------HHHHHHHHHHHHcCCHHHHHHHHHH--Hhc
Q 019734 141 VDAGLMYWEMDKKEAAISLYRQAAVL-GDPAGQFNLGISYLQ--------EEAVKLLYQASIAGHVRAQYQLALC--LHR 209 (336)
Q Consensus 141 ~~lg~~~~~~~~~~~A~~~~~~a~~~-~~~~a~~~Lg~~~~~--------~~A~~~~~ka~~~~~~~a~~~lg~~--~~~ 209 (336)
--+-.+|...+..++|+.+|++++.. ...+-++.+-++|.+ .-|++.|+- --.+++|-+..| +.+
T Consensus 81 q~l~~~y~d~~~~d~~~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~----~pk~~yyfWsV~Slilq 156 (932)
T KOG2053|consen 81 QFLQNVYRDLGKLDEAVHLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKN----FPKRAYYFWSVISLILQ 156 (932)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----CCcccchHHHHHHHHHH
Confidence 88999999999999999999999976 447777888888887 344444441 112334433332 223
Q ss_pred CC-CCcc-----CHHHHHHHHHHHHHCC-C--HHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH-c---CCHHHHHHHH
Q 019734 210 GR-GVDF-----NLQEAARWYLRAAEGG-Y--VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAAD-C---GHGKAQLEHG 276 (336)
Q Consensus 210 g~-g~~~-----~~~~A~~~~~~a~~~~-~--~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~-~---~~~~a~~~lg 276 (336)
+. +... -..-|....++.++.+ . ..+-..|-..-..+.| .+++|..++..-.. . .+......-+
T Consensus 157 s~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~---k~~eal~~l~~~la~~l~~~~~~l~~~~~ 233 (932)
T KOG2053|consen 157 SIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQG---KYQEALEFLAITLAEKLTSANLYLENKKL 233 (932)
T ss_pred hccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcc---cHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 22 1111 1123444444444443 2 2222222222233333 79999999955433 2 2222223334
Q ss_pred HHhhccCCHHHHHHHHHHHHHcCcHH
Q 019734 277 LGLFTEGEMMKAVVYLELATRAGETA 302 (336)
Q Consensus 277 ~~~~~~~~~~~A~~~~~~A~~~~~~~ 302 (336)
..+...+++.+-.+.-.+.+..++.+
T Consensus 234 dllk~l~~w~~l~~l~~~Ll~k~~Dd 259 (932)
T KOG2053|consen 234 DLLKLLNRWQELFELSSRLLEKGNDD 259 (932)
T ss_pred HHHHHhcChHHHHHHHHHHHHhCCcc
Confidence 55666777877777777777766554
No 210
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.07 E-value=0.00056 Score=39.54 Aligned_cols=31 Identities=19% Similarity=0.214 Sum_probs=25.2
Q ss_pred HHHHHHHc--CCHHHHHHHHHHHhcCCCHHHHH
Q 019734 127 SFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAI 157 (336)
Q Consensus 127 ~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~ 157 (336)
+|++|++. +++.++++||.+|...|++++|+
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 36788876 58888888888888888888886
No 211
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.06 E-value=0.17 Score=43.64 Aligned_cols=153 Identities=12% Similarity=-0.020 Sum_probs=82.7
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----HHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCC
Q 019734 138 LAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAGQFNLGISYLQ----EEAVKLLYQASIAGHVRAQYQLALCLHRGRGV 213 (336)
Q Consensus 138 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~----~~A~~~~~ka~~~~~~~a~~~lg~~~~~g~g~ 213 (336)
.....-+.+|...+++++|.....+ .++.++...=-.++.. +.|...+++..+.++-.....|+..+..--+-
T Consensus 109 i~~l~aa~i~~~~~~~deAl~~~~~---~~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~g 185 (299)
T KOG3081|consen 109 IDLLLAAIIYMHDGDFDEALKALHL---GENLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATG 185 (299)
T ss_pred HHHHHhhHHhhcCCChHHHHHHHhc---cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhcc
Confidence 4444455666666666666666555 1222222111112222 55555555555555544555566555421111
Q ss_pred ccCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhccCCHHHHH
Q 019734 214 DFNLQEAARWYLRAAEGG--YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAV 289 (336)
Q Consensus 214 ~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~A~ 289 (336)
......|.-+|+.-.+.- .+......+.|+.. .+++++|...++.++.. ++++...|+-.+-...|...++.
T Consensus 186 gek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~----~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~ 261 (299)
T KOG3081|consen 186 GEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQ----LGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVT 261 (299)
T ss_pred chhhhhHHHHHHHHhcccCCChHHHccHHHHHHH----hcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHH
Confidence 233777777777776642 34445555555543 23778888888777764 56777777777666667655555
Q ss_pred HHHHHHHH
Q 019734 290 VYLELATR 297 (336)
Q Consensus 290 ~~~~~A~~ 297 (336)
.-+-.-+.
T Consensus 262 ~r~l~QLk 269 (299)
T KOG3081|consen 262 ERNLSQLK 269 (299)
T ss_pred HHHHHHHH
Confidence 44444433
No 212
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.04 E-value=0.033 Score=43.50 Aligned_cols=79 Identities=20% Similarity=0.303 Sum_probs=65.9
Q ss_pred CCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc---C--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-----CC
Q 019734 99 REAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR---G--STLAMVDAGLMYWEMDKKEAAISLYRQAAVL-----GD 168 (336)
Q Consensus 99 ~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~---~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~-----~~ 168 (336)
..+..+|.-|.-.+. .+++.+|++.|+..-.. | ...+.+.|+..|+..+++++|+..+.+-+.+ ..
T Consensus 8 ~~~~~ly~~a~~~l~----~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v 83 (142)
T PF13512_consen 8 KSPQELYQEAQEALQ----KGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV 83 (142)
T ss_pred CCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc
Confidence 357778888888877 68999999999987765 2 4689999999999999999999999999876 34
Q ss_pred HHHHHHHHHHHHH
Q 019734 169 PAGQFNLGISYLQ 181 (336)
Q Consensus 169 ~~a~~~Lg~~~~~ 181 (336)
+-+++..|.++..
T Consensus 84 dYa~Y~~gL~~~~ 96 (142)
T PF13512_consen 84 DYAYYMRGLSYYE 96 (142)
T ss_pred cHHHHHHHHHHHH
Confidence 5688888888875
No 213
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.04 E-value=0.0013 Score=37.82 Aligned_cols=32 Identities=22% Similarity=0.288 Sum_probs=26.1
Q ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHHHHcCc
Q 019734 269 GKAQLEHGLGLFTEGEMMKAVVYLELATRAGE 300 (336)
Q Consensus 269 ~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~~ 300 (336)
+.+++++|.+|...|++++|+..|++|++..+
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 32 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence 35788999999999999999999999988654
No 214
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.02 E-value=0.0015 Score=37.38 Aligned_cols=32 Identities=22% Similarity=0.271 Sum_probs=26.3
Q ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHHHHcCc
Q 019734 269 GKAQLEHGLGLFTEGEMMKAVVYLELATRAGE 300 (336)
Q Consensus 269 ~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~~ 300 (336)
+.+++.+|.+|+..|++++|+.+|+++++..+
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p 32 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence 35678999999999999999999999988654
No 215
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=96.97 E-value=0.65 Score=48.80 Aligned_cols=198 Identities=14% Similarity=0.017 Sum_probs=147.0
Q ss_pred HHHHHHHHHc--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHH-HHHHHHHHHH
Q 019734 125 LDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL----------GDPAGQFNLGISYLQ-EEAVKLLYQA 191 (336)
Q Consensus 125 ~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----------~~~~a~~~Lg~~~~~-~~A~~~~~ka 191 (336)
.+-|++-+.. +....|.+.-..+.+.++.++|++.+++|+.. +...|++||=+.|-. +.-.+.|++|
T Consensus 1444 aeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRA 1523 (1710)
T KOG1070|consen 1444 AEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERA 1523 (1710)
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHH
Confidence 4445555544 45666666666667889999999999999843 334566777666663 8888899999
Q ss_pred HHcCC-HHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHC-C-CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH---
Q 019734 192 SIAGH-VRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG-G-YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAAD--- 265 (336)
Q Consensus 192 ~~~~~-~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~-~-~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~--- 265 (336)
.+.-+ ...+..|..+|.. ...+++|.++|+..+.. + ....|..++..+++.. +-++|...+.+|+.
T Consensus 1524 cqycd~~~V~~~L~~iy~k----~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~n----e~~aa~~lL~rAL~~lP 1595 (1710)
T KOG1070|consen 1524 CQYCDAYTVHLKLLGIYEK----SEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQN----EAEAARELLKRALKSLP 1595 (1710)
T ss_pred HHhcchHHHHHHHHHHHHH----hhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhccc----HHHHHHHHHHHHHhhcc
Confidence 88755 4788899999998 67899999999998765 3 6778888888887533 55888889999987
Q ss_pred -cCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHcCcHHHHHHHHHHHhhcChhcHHHHHHHHHHhh
Q 019734 266 -CGHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWR 330 (336)
Q Consensus 266 -~~~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~ 330 (336)
+.+....-..+.+-+..||.+.+...|+--+...+..-..+.-.+-..+..++.+.++.++.+..
T Consensus 1596 k~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi 1661 (1710)
T KOG1070|consen 1596 KQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVI 1661 (1710)
T ss_pred hhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 35677777888889999999999999999888776555555555555555555555555555444
No 216
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=96.88 E-value=0.011 Score=47.88 Aligned_cols=29 Identities=14% Similarity=0.037 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHc--CCHHHHHHHHHHHhcC
Q 019734 122 DKALDSFLKGAAR--GSTLAMVDAGLMYWEM 150 (336)
Q Consensus 122 ~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~ 150 (336)
+.|.+.++..... .+++++++-|..+.+.
T Consensus 8 E~ark~aea~y~~nP~DadnL~~WG~ALLEL 38 (186)
T PF06552_consen 8 EHARKKAEAAYAKNPLDADNLTNWGGALLEL 38 (186)
T ss_dssp HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHhHHHHHHHHHHHHHH
Confidence 4445555544333 3455555555555443
No 217
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=96.79 E-value=0.0032 Score=35.99 Aligned_cols=30 Identities=27% Similarity=0.380 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 019734 137 TLAMVDAGLMYWEMDKKEAAISLYRQAAVL 166 (336)
Q Consensus 137 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~ 166 (336)
+++++.+|.+++..|++++|+.+|+++++.
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 467888999999999999999999998764
No 218
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=96.79 E-value=0.0013 Score=37.99 Aligned_cols=30 Identities=17% Similarity=0.220 Sum_probs=24.4
Q ss_pred HHHHHHc--CCHHHHHHHHHHhhccCCHHHHH
Q 019734 260 MKRAADC--GHGKAQLEHGLGLFTEGEMMKAV 289 (336)
Q Consensus 260 ~~~a~~~--~~~~a~~~lg~~~~~~~~~~~A~ 289 (336)
|++|++. +++.++++||.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 6777764 67888888998888888888875
No 219
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=96.69 E-value=0.0038 Score=35.76 Aligned_cols=30 Identities=27% Similarity=0.449 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 019734 137 TLAMVDAGLMYWEMDKKEAAISLYRQAAVL 166 (336)
Q Consensus 137 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~ 166 (336)
+.+++++|.+|...|++++|+..|+++++.
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 356777888888888888888888877754
No 220
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.63 E-value=0.28 Score=46.90 Aligned_cols=106 Identities=20% Similarity=0.153 Sum_probs=64.1
Q ss_pred cCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC------CHHHHHHHHHHHHH----HHHH
Q 019734 118 RKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLG------DPAGQFNLGISYLQ----EEAV 185 (336)
Q Consensus 118 ~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~------~~~a~~~Lg~~~~~----~~A~ 185 (336)
..+.+.|.+.+...... +..--.+.-|+++...|+.++|+.+|++++... ..-.++.+|.++.- ++|.
T Consensus 246 ~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~ 325 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAA 325 (468)
T ss_pred CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHH
Confidence 56677777777777664 455566677778877788888888888776431 12234556666655 6666
Q ss_pred HHHHHHHHcC-CHH--HHHHHHHHHhcCCCCccCH-------HHHHHHHHHH
Q 019734 186 KLLYQASIAG-HVR--AQYQLALCLHRGRGVDFNL-------QEAARWYLRA 227 (336)
Q Consensus 186 ~~~~ka~~~~-~~~--a~~~lg~~~~~g~g~~~~~-------~~A~~~~~~a 227 (336)
.+|.+..+.. -.. -.|..|.|+.. .++. ++|..+|.++
T Consensus 326 ~~f~~L~~~s~WSka~Y~Y~~a~c~~~----l~~~~~~~~~~~~a~~l~~~v 373 (468)
T PF10300_consen 326 EYFLRLLKESKWSKAFYAYLAAACLLM----LGREEEAKEHKKEAEELFRKV 373 (468)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHh----hccchhhhhhHHHHHHHHHHH
Confidence 7776666553 222 23445555554 3333 5555555554
No 221
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.57 E-value=0.0047 Score=36.10 Aligned_cols=27 Identities=33% Similarity=0.474 Sum_probs=22.1
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 019734 139 AMVDAGLMYWEMDKKEAAISLYRQAAV 165 (336)
Q Consensus 139 a~~~lg~~~~~~~~~~~A~~~~~~a~~ 165 (336)
++.+||.+|...|++++|+.+|++++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 567899999999999999999999653
No 222
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.57 E-value=0.0041 Score=36.33 Aligned_cols=27 Identities=30% Similarity=0.241 Sum_probs=23.0
Q ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHH
Q 019734 271 AQLEHGLGLFTEGEMMKAVVYLELATR 297 (336)
Q Consensus 271 a~~~lg~~~~~~~~~~~A~~~~~~A~~ 297 (336)
++.+||.+|...|++++|+.+|++++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 467899999999999999999999664
No 223
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.50 E-value=0.24 Score=47.32 Aligned_cols=140 Identities=16% Similarity=0.118 Sum_probs=96.4
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHH----------------HHHHHHHHHHHH--cCCHHHHHHHHHHHhcC
Q 019734 150 MDKKEAAISLYRQAAVLGDPAGQF-NLGISYLQ----------------EEAVKLLYQASI--AGHVRAQYQLALCLHRG 210 (336)
Q Consensus 150 ~~~~~~A~~~~~~a~~~~~~~a~~-~Lg~~~~~----------------~~A~~~~~ka~~--~~~~~a~~~lg~~~~~g 210 (336)
.||-+.++..+.++.+.++..+.+ .|..+.+. +.|...++.... ++.+--.+.-|.++..
T Consensus 201 ~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~- 279 (468)
T PF10300_consen 201 SGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFFEGRLERL- 279 (468)
T ss_pred CCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-
Confidence 478888888888888765433221 11111111 456666666655 3555566777888877
Q ss_pred CCCccCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCCH---HHHHHHHHHhhc
Q 019734 211 RGVDFNLQEAARWYLRAAEGG------YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHG---KAQLEHGLGLFT 281 (336)
Q Consensus 211 ~g~~~~~~~A~~~~~~a~~~~------~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~~~~---~a~~~lg~~~~~ 281 (336)
.+|.++|+.+|+++.... .....+.++.++.. ..++++|..++.+..+.... .-.|..|.++..
T Consensus 280 ---~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~----~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~ 352 (468)
T PF10300_consen 280 ---KGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMF----QHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLM 352 (468)
T ss_pred ---hcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHH----HchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 789999999999886422 34567888888875 33999999999999886442 223677888888
Q ss_pred cCCH-------HHHHHHHHHHHH
Q 019734 282 EGEM-------MKAVVYLELATR 297 (336)
Q Consensus 282 ~~~~-------~~A~~~~~~A~~ 297 (336)
.++. ++|..+|+++-.
T Consensus 353 l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 353 LGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred hccchhhhhhHHHHHHHHHHHHH
Confidence 8888 888888887754
No 224
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.24 E-value=1.1 Score=42.27 Aligned_cols=104 Identities=13% Similarity=0.036 Sum_probs=66.2
Q ss_pred HHHHHHHHhcCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcCC---------
Q 019734 66 FDVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGS--------- 136 (336)
Q Consensus 66 ~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~~~--------- 136 (336)
++++.+|. ...+.+.-+..+++.++..++ .++|+..|+.=. .....+|..+|++|++.+.
T Consensus 172 q~IMq~AW---RERnp~aRIkaA~eALei~pd--CAdAYILLAEEe------A~Ti~Eae~l~rqAvkAgE~~lg~s~~~ 240 (539)
T PF04184_consen 172 QEIMQKAW---RERNPQARIKAAKEALEINPD--CADAYILLAEEE------ASTIVEAEELLRQAVKAGEASLGKSQFL 240 (539)
T ss_pred HHHHHHHH---hcCCHHHHHHHHHHHHHhhhh--hhHHHhhccccc------ccCHHHHHHHHHHHHHHHHHhhchhhhh
Confidence 33455443 566777777788899999877 888888777532 2357899999999875310
Q ss_pred ------------------HHHHHHHHHHHhcCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHH
Q 019734 137 ------------------TLAMVDAGLMYWEMDKKEAAISLYRQAAVL----GDPAGQFNLGISYL 180 (336)
Q Consensus 137 ------------------~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~~~ 180 (336)
..+...|+.+..+.|+.++|++.++..++. ++....++|-.+++
T Consensus 241 ~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LL 306 (539)
T PF04184_consen 241 QHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALL 306 (539)
T ss_pred hcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHH
Confidence 123445666666677777777777766643 22334455544444
No 225
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.11 E-value=1.1 Score=41.15 Aligned_cols=163 Identities=17% Similarity=0.087 Sum_probs=104.2
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc------CCHHHHHHHHHHHHH-------HHHHHHHHHHHHc---CCHHH
Q 019734 136 STLAMVDAGLMYWEMDKKEAAISLYRQAAVL------GDPAGQFNLGISYLQ-------EEAVKLLYQASIA---GHVRA 199 (336)
Q Consensus 136 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~------~~~~a~~~Lg~~~~~-------~~A~~~~~ka~~~---~~~~a 199 (336)
+++...++=..|...+|++..+.+....-.. ..+...+.+|.++.. ++|+..+..++.. .+++.
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~ 219 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT 219 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence 3455667777788889999999998876443 356667778888877 9999999997654 47899
Q ss_pred HHHHHHHHhcCC-----CCccCHHHHHHHHHHHHHCC-CHHHHHHHHHHHH-cCCCCcccHHHHHHHH----HHHHHcCC
Q 019734 200 QYQLALCLHRGR-----GVDFNLQEAARWYLRAAEGG-YVRAMYNTSLCYS-FGEGLPLSHRQARKWM----KRAADCGH 268 (336)
Q Consensus 200 ~~~lg~~~~~g~-----g~~~~~~~A~~~~~~a~~~~-~~~a~~~lg~~~~-~~~g~~~~~~~A~~~~----~~a~~~~~ 268 (336)
+..+|.+|..-+ ......++|+.||.++.+.. +.-.=.|++.++. .|.. ..+..+..+.- ....+.|.
T Consensus 220 ~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~-~~~~~el~~i~~~l~~llg~kg~ 298 (374)
T PF13281_consen 220 LGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHD-FETSEELRKIGVKLSSLLGRKGS 298 (374)
T ss_pred HHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCc-ccchHHHHHHHHHHHHHHHhhcc
Confidence 999999986422 22456899999999997653 2233334554443 3321 11222222222 11112221
Q ss_pred ---HHHH---HHHHHHhhccCCHHHHHHHHHHHHHcC
Q 019734 269 ---GKAQ---LEHGLGLFTEGEMMKAVVYLELATRAG 299 (336)
Q Consensus 269 ---~~a~---~~lg~~~~~~~~~~~A~~~~~~A~~~~ 299 (336)
..-+ -.+..+..-.||+++|.+++++++...
T Consensus 299 ~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~ 335 (374)
T PF13281_consen 299 LEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLK 335 (374)
T ss_pred ccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Confidence 1112 233333444899999999999999875
No 226
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.07 E-value=0.01 Score=33.86 Aligned_cols=30 Identities=23% Similarity=0.189 Sum_probs=25.5
Q ss_pred HHHHHHHHHhhccCCHHHHHHHHHHHHHcC
Q 019734 270 KAQLEHGLGLFTEGEMMKAVVYLELATRAG 299 (336)
Q Consensus 270 ~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~ 299 (336)
.+++.+|.+|...|++++|..+|+++++..
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~ 31 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELN 31 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 467889999999999999999999988754
No 227
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=96.00 E-value=0.79 Score=38.53 Aligned_cols=168 Identities=17% Similarity=0.091 Sum_probs=110.2
Q ss_pred CHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHH
Q 019734 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNL 175 (336)
Q Consensus 100 ~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~L 175 (336)
.+++..-||..+.. .+|++.|.+.|....++ +..-+..+.|..++.+|+++-|..-+.+--+. .||---..|
T Consensus 98 m~~vfNyLG~Yl~~----a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWL 173 (297)
T COG4785 98 MPEVFNYLGIYLTQ----AGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWL 173 (297)
T ss_pred cHHHHHHHHHHHHh----cccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHH
Confidence 68888889998888 69999999999999988 46788899999999999999999988887644 555333333
Q ss_pred HHHHHH---HHHHHHHHHHHHc------CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHH---------HCCCHHHHH
Q 019734 176 GISYLQ---EEAVKLLYQASIA------GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAA---------EGGYVRAMY 237 (336)
Q Consensus 176 g~~~~~---~~A~~~~~ka~~~------~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~---------~~~~~~a~~ 237 (336)
-..-.. .+|..-+.+-.+. |-....+.||.+-.. ..++++. ...-+++++
T Consensus 174 Yl~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgkiS~e------------~l~~~~~a~a~~n~~~Ae~LTEtyF 241 (297)
T COG4785 174 YLNEQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGKISEE------------TLMERLKADATDNTSLAEHLTETYF 241 (297)
T ss_pred HHHHhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHhhccHH------------HHHHHHHhhccchHHHHHHHHHHHH
Confidence 222222 5555555433332 223344555554322 1122221 112467899
Q ss_pred HHHHHHHcCCCCcccHHHHHHHHHHHHHcC------CHHHHHHHHHHhhccCCHHH
Q 019734 238 NTSLCYSFGEGLPLSHRQARKWMKRAADCG------HGKAQLEHGLGLFTEGEMMK 287 (336)
Q Consensus 238 ~lg~~~~~~~g~~~~~~~A~~~~~~a~~~~------~~~a~~~lg~~~~~~~~~~~ 287 (336)
.||..|.. .| +..+|...|+.++..+ +-.+.+.|+.++-...+..+
T Consensus 242 YL~K~~l~-~G---~~~~A~~LfKLaiannVynfVE~RyA~~EL~~l~q~~~~l~~ 293 (297)
T COG4785 242 YLGKYYLS-LG---DLDEATALFKLAVANNVYNFVEHRYALLELSLLGQDQDDLAE 293 (297)
T ss_pred HHHHHHhc-cc---cHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccccchhhh
Confidence 99999864 33 9999999999998742 23445666665555444443
No 228
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.91 E-value=0.032 Score=51.84 Aligned_cols=126 Identities=21% Similarity=0.170 Sum_probs=91.3
Q ss_pred CChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHH---cC--------CHHHHHHHHH
Q 019734 77 TLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAA---RG--------STLAMVDAGL 145 (336)
Q Consensus 77 ~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~---~~--------~~~a~~~lg~ 145 (336)
+..++..+..--+.....+. +.+++++.-...+.- .||+.+|.+.+-..-- .| .-..+++||-
T Consensus 218 q~~~Lk~~krevK~vmn~a~--~s~~~l~LKsq~eY~----~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGc 291 (696)
T KOG2471|consen 218 QTRNLKLAKREVKHVMNIAQ--DSSMALLLKSQLEYA----HGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGC 291 (696)
T ss_pred HHHHHHHHHHhhhhhhhhcC--CCcHHHHHHHHHHHH----hcchHHHHHHHHhcccccccCccccchhhhheeecCcce
Confidence 33444444333333333332 467777766666555 4799999998875421 12 1235689999
Q ss_pred HHhcCCCHHHHHHHHHHHHH--------------------cCCHHHHHHHHHHHHH----HHHHHHHHHHHHc--CCHHH
Q 019734 146 MYWEMDKKEAAISLYRQAAV--------------------LGDPAGQFNLGISYLQ----EEAVKLLYQASIA--GHVRA 199 (336)
Q Consensus 146 ~~~~~~~~~~A~~~~~~a~~--------------------~~~~~a~~~Lg~~~~~----~~A~~~~~ka~~~--~~~~a 199 (336)
+++..+.+.-+..+|.+|+. ....+..|+.|..|+. ..|.+||.+++.. .+|..
T Consensus 292 Ih~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrl 371 (696)
T KOG2471|consen 292 IHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRL 371 (696)
T ss_pred EeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHH
Confidence 99999999999999999984 1245678999999998 9999999999886 68999
Q ss_pred HHHHHHHHh
Q 019734 200 QYQLALCLH 208 (336)
Q Consensus 200 ~~~lg~~~~ 208 (336)
|..|+.|+.
T Consensus 372 WLRlAEcCi 380 (696)
T KOG2471|consen 372 WLRLAECCI 380 (696)
T ss_pred HHHHHHHHH
Confidence 999999874
No 229
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=95.90 E-value=0.02 Score=32.61 Aligned_cols=29 Identities=24% Similarity=0.370 Sum_probs=22.5
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 019734 138 LAMVDAGLMYWEMDKKEAAISLYRQAAVL 166 (336)
Q Consensus 138 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~ 166 (336)
.+++.+|.+|...|++++|+.+|+++++.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 46777888888888888888888887753
No 230
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=95.79 E-value=0.088 Score=44.61 Aligned_cols=84 Identities=15% Similarity=0.030 Sum_probs=58.7
Q ss_pred CccCHHHHHHHHHHHHH-----C-C---CHHHHHHHHHHHHcCCCCccc-------HHHHHHHHHHHHHcCC--------
Q 019734 213 VDFNLQEAARWYLRAAE-----G-G---YVRAMYNTSLCYSFGEGLPLS-------HRQARKWMKRAADCGH-------- 268 (336)
Q Consensus 213 ~~~~~~~A~~~~~~a~~-----~-~---~~~a~~~lg~~~~~~~g~~~~-------~~~A~~~~~~a~~~~~-------- 268 (336)
...++++|+..|..|+- . . -+..+..++++|.. .| + ..+|+.+|+++.+..+
T Consensus 89 ~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~-~~---~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~ 164 (214)
T PF09986_consen 89 GERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRD-LG---DEENEKRFLRKALEFYEEAYENEDFPIEGMDE 164 (214)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhc-cC---CHHHHHHHHHHHHHHHHHHHHhCcCCCCCchH
Confidence 36778888888887742 1 1 14456778888843 32 4 3456666666655321
Q ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHHHHcCc
Q 019734 269 GKAQLEHGLGLFTEGEMMKAVVYLELATRAGE 300 (336)
Q Consensus 269 ~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~~ 300 (336)
....+-+|.+..+.|++++|..||.+.+..+.
T Consensus 165 ~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~ 196 (214)
T PF09986_consen 165 ATLLYLIGELNRRLGNYDEAKRWFSRVIGSKK 196 (214)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCC
Confidence 35568999999999999999999999998653
No 231
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=95.61 E-value=0.2 Score=42.49 Aligned_cols=89 Identities=18% Similarity=0.255 Sum_probs=63.3
Q ss_pred cCCHHHHHHHHHHHHHc----C-C----HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHH
Q 019734 118 RKNLDKALDSFLKGAAR----G-S----TLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAGQFNLGISYLQEEAVKLL 188 (336)
Q Consensus 118 ~~~~~~A~~~~~~A~~~----~-~----~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~~~A~~~~ 188 (336)
..++++|++-|..|+-. + . +..+..++.+|...++.+....++++|+ ..|
T Consensus 90 ~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al---------------------~~y 148 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKAL---------------------EFY 148 (214)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHH---------------------HHH
Confidence 67899999999888643 1 1 3456778888888888666666665554 556
Q ss_pred HHHHHcC--------CHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHCC
Q 019734 189 YQASIAG--------HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGG 231 (336)
Q Consensus 189 ~ka~~~~--------~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~~ 231 (336)
++|.+.. ....+|.+|.++.. .|++++|..||.+.+..+
T Consensus 149 ~~a~~~e~~~~~~~~~~~l~YLigeL~rr----lg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 149 EEAYENEDFPIEGMDEATLLYLIGELNRR----LGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHhCcCCCCCchHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHcCC
Confidence 6666432 24567888888887 788888888888887553
No 232
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=95.38 E-value=0.31 Score=43.17 Aligned_cols=110 Identities=14% Similarity=-0.053 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHcC--CHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHH
Q 019734 182 EEAVKLLYQASIAG--HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQAR 257 (336)
Q Consensus 182 ~~A~~~~~ka~~~~--~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~g~~~~~~~A~ 257 (336)
+.|...|++|.+.+ ....+...|.+-.. +.+|.+.|...|++++.. .+...+......+.. . .+.+.|.
T Consensus 18 ~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~---~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~-~---~d~~~aR 90 (280)
T PF05843_consen 18 EAARKVFKRARKDKRCTYHVYVAYALMEYY---CNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK-L---NDINNAR 90 (280)
T ss_dssp HHHHHHHHHHHCCCCS-THHHHHHHHHHHH---TCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH-T---T-HHHHH
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-h---CcHHHHH
Confidence 55555566555432 23444445544221 024455566666655443 333333333333322 1 1555556
Q ss_pred HHHHHHHHc-CCH----HHHHHHHHHhhccCCHHHHHHHHHHHHHc
Q 019734 258 KWMKRAADC-GHG----KAQLEHGLGLFTEGEMMKAVVYLELATRA 298 (336)
Q Consensus 258 ~~~~~a~~~-~~~----~a~~~lg~~~~~~~~~~~A~~~~~~A~~~ 298 (336)
..|++++.. ... ..+...-..-...|+.+.....++++.+.
T Consensus 91 ~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 91 ALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 666655543 111 11222222223345555555555555443
No 233
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.27 E-value=1.7 Score=37.41 Aligned_cols=85 Identities=12% Similarity=0.002 Sum_probs=69.4
Q ss_pred CCChHHHHHHHHhcCCChhHHhhhHHHHHHHHHhCCCC-CHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--C---
Q 019734 62 ASLPFDVLNKIAASFTLPQLRAASLVCKSWNDALRPLR-EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--G--- 135 (336)
Q Consensus 62 ~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~--- 135 (336)
...+..+-.++...++.|++.+|+..+.......|-.+ ...++..++.++.. .+++++|+...++-+.+ +
T Consensus 31 ~~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk----~~~y~~A~~~~drFi~lyP~~~n 106 (254)
T COG4105 31 NLPASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYK----NGEYDLALAYIDRFIRLYPTHPN 106 (254)
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHh----cccHHHHHHHHHHHHHhCCCCCC
Confidence 44556778999999999999999999988888776432 36789999999988 58999999999999987 2
Q ss_pred CHHHHHHHHHHHhcC
Q 019734 136 STLAMVDAGLMYWEM 150 (336)
Q Consensus 136 ~~~a~~~lg~~~~~~ 150 (336)
-..+++..|..++..
T Consensus 107 ~dY~~YlkgLs~~~~ 121 (254)
T COG4105 107 ADYAYYLKGLSYFFQ 121 (254)
T ss_pred hhHHHHHHHHHHhcc
Confidence 346778888887765
No 234
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=95.23 E-value=0.028 Score=31.62 Aligned_cols=30 Identities=13% Similarity=0.169 Sum_probs=23.8
Q ss_pred HHHHHHHHHhhccCCHHHHHHHHHHHHHcC
Q 019734 270 KAQLEHGLGLFTEGEMMKAVVYLELATRAG 299 (336)
Q Consensus 270 ~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~ 299 (336)
++++++|.++...|++++|+..|++.++.-
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~ 30 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRY 30 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 467888888888888888888888877643
No 235
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=95.02 E-value=0.03 Score=31.48 Aligned_cols=28 Identities=14% Similarity=0.288 Sum_probs=21.7
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 019734 138 LAMVDAGLMYWEMDKKEAAISLYRQAAV 165 (336)
Q Consensus 138 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~ 165 (336)
++++.+|.++...|++++|+..|++.++
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 4677888888888888888888887765
No 236
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.86 E-value=0.88 Score=39.39 Aligned_cols=124 Identities=15% Similarity=0.144 Sum_probs=82.5
Q ss_pred cCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHH----c----CCHHHHHHHHHHHHH----H
Q 019734 118 RKNLDKALDSFLKGAARG---STLAMVDAGLMYWEMDKKEAAISLYRQAAV----L----GDPAGQFNLGISYLQ----E 182 (336)
Q Consensus 118 ~~~~~~A~~~~~~A~~~~---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~----~----~~~~a~~~Lg~~~~~----~ 182 (336)
.+.+.-++..+.+.++.. .+.-...||.+-.+-||.+.|..+|++.-+ . +......+.+.+|.. .
T Consensus 190 ~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a 269 (366)
T KOG2796|consen 190 MKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFA 269 (366)
T ss_pred chhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchH
Confidence 367777788888887764 566667788888888888888888874421 1 233445555666655 6
Q ss_pred HHHHHHHHHHHcC--CHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHc
Q 019734 183 EAVKLLYQASIAG--HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGY-----VRAMYNTSLCYSF 245 (336)
Q Consensus 183 ~A~~~~~ka~~~~--~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~~~-----~~a~~~lg~~~~~ 245 (336)
.|...|.+.+..+ ++.+..+-+.|... .++...|++..+.+.+... ....++|-.+|..
T Consensus 270 ~a~r~~~~i~~~D~~~~~a~NnKALcllY----lg~l~DAiK~~e~~~~~~P~~~l~es~~~nL~tmyEL 335 (366)
T KOG2796|consen 270 EAHRFFTEILRMDPRNAVANNNKALCLLY----LGKLKDALKQLEAMVQQDPRHYLHESVLFNLTTMYEL 335 (366)
T ss_pred HHHHHHhhccccCCCchhhhchHHHHHHH----HHHHHHHHHHHHHHhccCCccchhhhHHHHHHHHHHH
Confidence 6666776676554 56677777777776 7788888888888876532 2234446665543
No 237
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=94.80 E-value=0.067 Score=31.81 Aligned_cols=29 Identities=21% Similarity=0.092 Sum_probs=24.8
Q ss_pred HHHHHHHHHhhccCCHHHHHHHHHHHHHc
Q 019734 270 KAQLEHGLGLFTEGEMMKAVVYLELATRA 298 (336)
Q Consensus 270 ~a~~~lg~~~~~~~~~~~A~~~~~~A~~~ 298 (336)
.++.+||.+|...|++++|..++++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 46789999999999999999999999863
No 238
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.69 E-value=2.9 Score=36.98 Aligned_cols=25 Identities=20% Similarity=0.299 Sum_probs=21.4
Q ss_pred HHHHHHhhccCCHHHHHHHHHHHHH
Q 019734 273 LEHGLGLFTEGEMMKAVVYLELATR 297 (336)
Q Consensus 273 ~~lg~~~~~~~~~~~A~~~~~~A~~ 297 (336)
.+-|...++.++|++|..||+.++.
T Consensus 250 W~~~~~~~~~k~y~~A~~w~~~al~ 274 (278)
T PF08631_consen 250 WNKGKKHYKAKNYDEAIEWYELALH 274 (278)
T ss_pred HHHHHHHHhhcCHHHHHHHHHHHHH
Confidence 5667788889999999999998874
No 239
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=94.49 E-value=0.095 Score=44.40 Aligned_cols=81 Identities=20% Similarity=0.051 Sum_probs=63.1
Q ss_pred ccCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhccCCHHHHH
Q 019734 214 DFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAV 289 (336)
Q Consensus 214 ~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~A~ 289 (336)
.+.+..|+..|.+|+-. ..+.-+.+-+.||++. ++++....--++|++. +...+.+.||.+......+++|+
T Consensus 23 ~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~----~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI 98 (284)
T KOG4642|consen 23 PKRYDDAIDCYSRAICINPTVASYYTNRALCHLKL----KHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAI 98 (284)
T ss_pred hhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHh----hhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHH
Confidence 67888899999888654 3445566888888763 3788888888888875 44677889999888889999999
Q ss_pred HHHHHHHHc
Q 019734 290 VYLELATRA 298 (336)
Q Consensus 290 ~~~~~A~~~ 298 (336)
..+.+|..+
T Consensus 99 ~~Lqra~sl 107 (284)
T KOG4642|consen 99 KVLQRAYSL 107 (284)
T ss_pred HHHHHHHHH
Confidence 999998553
No 240
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=94.43 E-value=0.099 Score=31.04 Aligned_cols=29 Identities=21% Similarity=0.227 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 019734 137 TLAMVDAGLMYWEMDKKEAAISLYRQAAV 165 (336)
Q Consensus 137 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~ 165 (336)
..++.+||.+|...|++++|+.+++++++
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 35678899999999999999999998874
No 241
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.40 E-value=0.59 Score=38.74 Aligned_cols=79 Identities=14% Similarity=0.087 Sum_probs=56.6
Q ss_pred cCCHHHHHHHHHHHHHcC-------CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHH----HHH
Q 019734 118 RKNLDKALDSFLKGAARG-------STLAMVDAGLMYWEMDKKEAAISLYRQAAVLG--DPAGQFNLGISYLQ----EEA 184 (336)
Q Consensus 118 ~~~~~~A~~~~~~A~~~~-------~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~~~~----~~A 184 (336)
.+++++|..-|..|+..- -...+.+.|.+....+..+.||.-..+|++.+ +..|+...+.+|.. +.|
T Consensus 108 ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eea 187 (271)
T KOG4234|consen 108 NGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEA 187 (271)
T ss_pred cccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHH
Confidence 468888888888887752 12344567777777888888888888888774 35666667777766 888
Q ss_pred HHHHHHHHHcCC
Q 019734 185 VKLLYQASIAGH 196 (336)
Q Consensus 185 ~~~~~ka~~~~~ 196 (336)
++-|++.++.+.
T Consensus 188 leDyKki~E~dP 199 (271)
T KOG4234|consen 188 LEDYKKILESDP 199 (271)
T ss_pred HHHHHHHHHhCc
Confidence 888888877653
No 242
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.34 E-value=1.2 Score=38.65 Aligned_cols=140 Identities=11% Similarity=0.050 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHcC---CHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHH------HC--CCHHHHHHHHHHHHcCCCCc
Q 019734 182 EEAVKLLYQASIAG---HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAA------EG--GYVRAMYNTSLCYSFGEGLP 250 (336)
Q Consensus 182 ~~A~~~~~ka~~~~---~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~------~~--~~~~a~~~lg~~~~~~~g~~ 250 (336)
.-.+..+.+.++.+ ++.-...||.+-.+ .||.+.|..+|++.- +. +.....-+.+.+|. +.
T Consensus 194 ~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ----~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~l----g~ 265 (366)
T KOG2796|consen 194 VLSVDAYHSVIKYYPEQEPQLLSGLGRISMQ----IGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHL----GQ 265 (366)
T ss_pred hhhHHHHHHHHHhCCcccHHHHHHHHHHHHh----cccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhhee----cc
Confidence 55566666666643 45566677777666 678888888887431 11 22333344444553 24
Q ss_pred ccHHHHHHHHHHHHHcCC--HHHHHHHHHHhhccCCHHHHHHHHHHHHHcCcHH-----HHHHHHHHHhhcChhcHHHHH
Q 019734 251 LSHRQARKWMKRAADCGH--GKAQLEHGLGLFTEGEMMKAVVYLELATRAGETA-----ADHVKNVILQQLSATSRDRAM 323 (336)
Q Consensus 251 ~~~~~A~~~~~~a~~~~~--~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~~~~-----a~~~~~~~~~~~~~~~~~~a~ 323 (336)
+|+..|...|.+.+..++ +.+-++-+.|..-.|+..+|++..+.++...+.. ...++-.+++ +.-....+.+
T Consensus 266 nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~es~~~nL~tmyE-L~Ys~~~~~k 344 (366)
T KOG2796|consen 266 NNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLHESVLFNLTTMYE-LEYSRSMQKK 344 (366)
T ss_pred cchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhHHHHHHHHHH-HHhhhhhhHH
Confidence 578888888877776544 3444566666666788888888888887764322 2233444433 2333344444
Q ss_pred HHHHHhh
Q 019734 324 LVVDSWR 330 (336)
Q Consensus 324 ~~~~~~~ 330 (336)
....+|+
T Consensus 345 ~~l~~~i 351 (366)
T KOG2796|consen 345 QALLEAV 351 (366)
T ss_pred HHHHHHH
Confidence 5555554
No 243
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=94.27 E-value=0.3 Score=43.68 Aligned_cols=93 Identities=18% Similarity=-0.017 Sum_probs=73.3
Q ss_pred HHHHHHHhcCCCCccCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcC--CHHHHHHHH
Q 019734 201 YQLALCLHRGRGVDFNLQEAARWYLRAAE--GGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCG--HGKAQLEHG 276 (336)
Q Consensus 201 ~~lg~~~~~g~g~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~~--~~~a~~~lg 276 (336)
-.-|+-|.. .+.|++|+.+|.+++. +.++..+.+.+..|++ .+.+..|..--..|+.++ +..++..-|
T Consensus 101 KE~GN~yFK----QgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk----~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~ 172 (536)
T KOG4648|consen 101 KERGNTYFK----QGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLK----QKSFAQAEEDCEAAIALDKLYVKAYSRRM 172 (536)
T ss_pred HHhhhhhhh----ccchhHHHHHhhhhhccCCCCccchhhHHHHHHH----HHHHHHHHHhHHHHHHhhHHHHHHHHHHH
Confidence 445666666 7899999999999865 4577788888888986 347888888878777764 466777778
Q ss_pred HHhhccCCHHHHHHHHHHHHHcCcH
Q 019734 277 LGLFTEGEMMKAVVYLELATRAGET 301 (336)
Q Consensus 277 ~~~~~~~~~~~A~~~~~~A~~~~~~ 301 (336)
..-...|+..+|.+-++.++++.+.
T Consensus 173 ~AR~~Lg~~~EAKkD~E~vL~LEP~ 197 (536)
T KOG4648|consen 173 QARESLGNNMEAKKDCETVLALEPK 197 (536)
T ss_pred HHHHHHhhHHHHHHhHHHHHhhCcc
Confidence 8888899999999999999987644
No 244
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.23 E-value=1.1 Score=36.88 Aligned_cols=94 Identities=22% Similarity=0.102 Sum_probs=64.9
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CC----HHHHHHHHHHHHH----HHHHHHHHHHHHcC-CHHHHHHHHHHH
Q 019734 138 LAMVDAGLMYWEMDKKEAAISLYRQAAVL-GD----PAGQFNLGISYLQ----EEAVKLLYQASIAG-HVRAQYQLALCL 207 (336)
Q Consensus 138 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~-~~----~~a~~~Lg~~~~~----~~A~~~~~ka~~~~-~~~a~~~lg~~~ 207 (336)
.+...++..+...+++++|+..++.++.. .| +-+-..|+.+... ++|+..+....+.+ .+.....-|+++
T Consensus 90 laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDil 169 (207)
T COG2976 90 LAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDIL 169 (207)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHH
Confidence 44567778888888888888888887744 22 2344667777766 66666666555444 344566678888
Q ss_pred hcCCCCccCHHHHHHHHHHHHHCCCHHH
Q 019734 208 HRGRGVDFNLQEAARWYLRAAEGGYVRA 235 (336)
Q Consensus 208 ~~g~g~~~~~~~A~~~~~~a~~~~~~~a 235 (336)
.. .+|-++|+..|+++++.+...+
T Consensus 170 l~----kg~k~~Ar~ay~kAl~~~~s~~ 193 (207)
T COG2976 170 LA----KGDKQEARAAYEKALESDASPA 193 (207)
T ss_pred HH----cCchHHHHHHHHHHHHccCChH
Confidence 87 7889999999999987754333
No 245
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=94.18 E-value=0.6 Score=41.36 Aligned_cols=75 Identities=16% Similarity=0.128 Sum_probs=32.6
Q ss_pred HHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHC-CCHH---HHHHHHHHHHcCCCCcccHHHHH
Q 019734 184 AVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG-GYVR---AMYNTSLCYSFGEGLPLSHRQAR 257 (336)
Q Consensus 184 A~~~~~ka~~~--~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~-~~~~---a~~~lg~~~~~~~g~~~~~~~A~ 257 (336)
|...|+.+++. .+...+......+.. .+|.+.|...|++++.. .... ..+..=.-|....| +.+...
T Consensus 55 A~~Ife~glk~f~~~~~~~~~Y~~~l~~----~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~G---dl~~v~ 127 (280)
T PF05843_consen 55 ARKIFERGLKKFPSDPDFWLEYLDFLIK----LNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYG---DLESVR 127 (280)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH----TT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHH----hCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcC---CHHHHH
Confidence 44444444432 334444444444444 45666677777766543 1111 11111111222233 666666
Q ss_pred HHHHHHHH
Q 019734 258 KWMKRAAD 265 (336)
Q Consensus 258 ~~~~~a~~ 265 (336)
..++++.+
T Consensus 128 ~v~~R~~~ 135 (280)
T PF05843_consen 128 KVEKRAEE 135 (280)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666655
No 246
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=94.01 E-value=0.078 Score=28.65 Aligned_cols=30 Identities=23% Similarity=0.265 Sum_probs=24.2
Q ss_pred HHHHHHHHHhhccCCHHHHHHHHHHHHHcC
Q 019734 270 KAQLEHGLGLFTEGEMMKAVVYLELATRAG 299 (336)
Q Consensus 270 ~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~ 299 (336)
.+++++|.++...+++++|..+|++++...
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~ 31 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELD 31 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccC
Confidence 456788888888889999998888887653
No 247
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.66 E-value=2.1 Score=35.39 Aligned_cols=87 Identities=15% Similarity=0.039 Sum_probs=61.5
Q ss_pred HHHHHHHHH----HHHHHHHHHHHHcC-----CHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHCCC-HHHHHHHHHH
Q 019734 173 FNLGISYLQ----EEAVKLLYQASIAG-----HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGY-VRAMYNTSLC 242 (336)
Q Consensus 173 ~~Lg~~~~~----~~A~~~~~ka~~~~-----~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~~~-~~a~~~lg~~ 242 (336)
..++..+.+ ++|+..++.++... .+.+-..|+.+... .+.+++|...+....+.+. +...-..|.+
T Consensus 93 L~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q----~~k~D~AL~~L~t~~~~~w~~~~~elrGDi 168 (207)
T COG2976 93 LELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQ----QKKADAALKTLDTIKEESWAAIVAELRGDI 168 (207)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHH----hhhHHHHHHHHhccccccHHHHHHHHhhhH
Confidence 445555555 88888888887542 23456788888887 7889999888877654443 3345567888
Q ss_pred HHcCCCCcccHHHHHHHHHHHHHcC
Q 019734 243 YSFGEGLPLSHRQARKWMKRAADCG 267 (336)
Q Consensus 243 ~~~~~g~~~~~~~A~~~~~~a~~~~ 267 (336)
+.. .++.++|+..|++++..+
T Consensus 169 ll~----kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 169 LLA----KGDKQEARAAYEKALESD 189 (207)
T ss_pred HHH----cCchHHHHHHHHHHHHcc
Confidence 865 338999999999998874
No 248
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=93.65 E-value=0.35 Score=41.14 Aligned_cols=74 Identities=24% Similarity=0.270 Sum_probs=39.8
Q ss_pred CCHHHHHHHHHHHHHcC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHH----HHHHHHHHH
Q 019734 119 KNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQ----EEAVKLLYQ 190 (336)
Q Consensus 119 ~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~----~~A~~~~~k 190 (336)
+.+..|+.+|.+|+..+ .+.-+.+-+.+|+...+++....-.++|++. +.+.++|.||.+.+. .+|+..+++
T Consensus 24 k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqr 103 (284)
T KOG4642|consen 24 KRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQR 103 (284)
T ss_pred hhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 45555555555555543 2233345555555555555555555555544 345555555555555 555555555
Q ss_pred HH
Q 019734 191 AS 192 (336)
Q Consensus 191 a~ 192 (336)
|.
T Consensus 104 a~ 105 (284)
T KOG4642|consen 104 AY 105 (284)
T ss_pred HH
Confidence 53
No 249
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=93.65 E-value=0.37 Score=43.13 Aligned_cols=93 Identities=9% Similarity=-0.033 Sum_probs=65.5
Q ss_pred HHHHHHhcCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcC--CHHHHHHHHH
Q 019734 68 VLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGL 145 (336)
Q Consensus 68 ~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~ 145 (336)
+-.++...|.+|.|++|+++|-......|. ++..+.+.+.+|+. .+.+..|..-...|+.++ ...|+...|.
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~--NpV~~~NRA~AYlk----~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~ 173 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPH--NPVYHINRALAYLK----QKSFAQAEEDCEAAIALDKLYVKAYSRRMQ 173 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCC--CccchhhHHHHHHH----HHHHHHHHHhHHHHHHhhHHHHHHHHHHHH
Confidence 345666677888888888777777666554 66677777777777 467777777777777664 3556666676
Q ss_pred HHhcCCCHHHHHHHHHHHHHc
Q 019734 146 MYWEMDKKEAAISLYRQAAVL 166 (336)
Q Consensus 146 ~~~~~~~~~~A~~~~~~a~~~ 166 (336)
.-...|...+|.+-++.++.+
T Consensus 174 AR~~Lg~~~EAKkD~E~vL~L 194 (536)
T KOG4648|consen 174 ARESLGNNMEAKKDCETVLAL 194 (536)
T ss_pred HHHHHhhHHHHHHhHHHHHhh
Confidence 666777777777777777654
No 250
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=93.51 E-value=7.7 Score=38.63 Aligned_cols=48 Identities=21% Similarity=0.106 Sum_probs=36.0
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHcC
Q 019734 252 SHRQARKWMKRAADCGHGKAQLEHGLGLFTEGEMMKAVVYLELATRAG 299 (336)
Q Consensus 252 ~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~ 299 (336)
.++-|...-+.+++...+..+..++..+.+.|++++|-+.|-.|+..+
T Consensus 978 afd~afdlari~~k~k~~~vhlk~a~~ledegk~edaskhyveaikln 1025 (1636)
T KOG3616|consen 978 AFDFAFDLARIAAKDKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLN 1025 (1636)
T ss_pred chhhHHHHHHHhhhccCccchhHHhhhhhhccchhhhhHhhHHHhhcc
Confidence 455555555666555556677888888888999999999999988754
No 251
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.30 E-value=2.2 Score=36.57 Aligned_cols=105 Identities=15% Similarity=0.190 Sum_probs=60.3
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHH----------cCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 019734 138 LAMVDAGLMYWEMDKKEAAISLYRQAAV----------LGDPAGQFNLGISYLQEEAVKLLYQASIAGHVRAQYQLALCL 207 (336)
Q Consensus 138 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~----------~~~~~a~~~Lg~~~~~~~A~~~~~ka~~~~~~~a~~~lg~~~ 207 (336)
.++.+-|.-++..|++.+|...|+.|+- +++++ |..| +.-...-+.|+..|+
T Consensus 179 ~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~e-W~eL-----------------dk~~tpLllNy~QC~ 240 (329)
T KOG0545|consen 179 PVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPE-WLEL-----------------DKMITPLLLNYCQCL 240 (329)
T ss_pred HHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChH-HHHH-----------------HHhhhHHHHhHHHHH
Confidence 4667778888888999999999988862 12221 1111 111233455566666
Q ss_pred hcCCCCccCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCC
Q 019734 208 HRGRGVDFNLQEAARWYLRAAE--GGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGH 268 (336)
Q Consensus 208 ~~g~g~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~~~ 268 (336)
.. .+++-++++.....+. .++..|++.-|.++..-. +..+|..-|.++++.+.
T Consensus 241 L~----~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~W----n~~eA~~D~~~vL~ldp 295 (329)
T KOG0545|consen 241 LK----KEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVW----NEAEAKADLQKVLELDP 295 (329)
T ss_pred hh----HHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhc----CHHHHHHHHHHHHhcCh
Confidence 55 5566666665555543 355666666666554334 55666666666655443
No 252
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=93.29 E-value=7.6 Score=38.41 Aligned_cols=95 Identities=17% Similarity=0.128 Sum_probs=55.0
Q ss_pred HHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc----------CCCHHHHHHH
Q 019734 90 SWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWE----------MDKKEAAISL 159 (336)
Q Consensus 90 ~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~----------~~~~~~A~~~ 159 (336)
++.+. .+++..|..|+..-.. +-+++-|...|-++..-.-..-.-.|+.++.+ -|++++|.+.
T Consensus 684 qfiEd---nPHprLWrllAe~Al~----Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~ 756 (1189)
T KOG2041|consen 684 QFIED---NPHPRLWRLLAEYALF----KLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKL 756 (1189)
T ss_pred HHHhc---CCchHHHHHHHHHHHH----HHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhh
Confidence 44444 6788888888887766 45677777777665432111112223333322 2566666666
Q ss_pred HHHH------H----------------Hc--------CCHHHHHHHHHHHHH----HHHHHHHHHH
Q 019734 160 YRQA------A----------------VL--------GDPAGQFNLGISYLQ----EEAVKLLYQA 191 (336)
Q Consensus 160 ~~~a------~----------------~~--------~~~~a~~~Lg~~~~~----~~A~~~~~ka 191 (336)
|..+ + .. +-..|+.++|..+.. ++|.++|.+.
T Consensus 757 yld~drrDLAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~ 822 (1189)
T KOG2041|consen 757 YLDADRRDLAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYC 822 (1189)
T ss_pred hhccchhhhhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5432 1 11 224577788887776 8888888765
No 253
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=93.27 E-value=7.7 Score=36.84 Aligned_cols=133 Identities=18% Similarity=0.112 Sum_probs=79.8
Q ss_pred HhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHH--HHHHHHHHHHHHcCCH-----HHHHHHHHHHhcCCCCccCH
Q 019734 147 YWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQ--EEAVKLLYQASIAGHV-----RAQYQLALCLHRGRGVDFNL 217 (336)
Q Consensus 147 ~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~--~~A~~~~~ka~~~~~~-----~a~~~lg~~~~~g~g~~~~~ 217 (336)
-++..+++.-++.-++|++. +.+.|+..|+.-... .+|..+|+|+++.+.. .....-|..+..
T Consensus 178 AWRERnp~aRIkaA~eALei~pdCAdAYILLAEEeA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~-------- 249 (539)
T PF04184_consen 178 AWRERNPQARIKAAKEALEINPDCADAYILLAEEEASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEA-------- 249 (539)
T ss_pred HHhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccccccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhh--------
Confidence 34566777777777777655 456777666654333 7888888887764311 111111111110
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc----CCHHHHHHHHHHhhccCCHHHHHHHHH
Q 019734 218 QEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC----GHGKAQLEHGLGLFTEGEMMKAVVYLE 293 (336)
Q Consensus 218 ~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~~~~~~~A~~~~~ 293 (336)
+..+- ..-..-+...|+.|..+ .| ..++|++.++..++. ++...+++|-.++.+.+.+.++...+.
T Consensus 250 -----~~~Rd-t~~~~y~KrRLAmCark-lG---r~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~ 319 (539)
T PF04184_consen 250 -----WHRRD-TNVLVYAKRRLAMCARK-LG---RLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLA 319 (539)
T ss_pred -----hhccc-cchhhhhHHHHHHHHHH-hC---ChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHH
Confidence 00000 01124455678888754 33 888898888888763 234567888888888888888888888
Q ss_pred HHHH
Q 019734 294 LATR 297 (336)
Q Consensus 294 ~A~~ 297 (336)
+--+
T Consensus 320 kYdD 323 (539)
T PF04184_consen 320 KYDD 323 (539)
T ss_pred Hhcc
Confidence 7543
No 254
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=93.20 E-value=8.2 Score=36.99 Aligned_cols=182 Identities=12% Similarity=-0.010 Sum_probs=101.5
Q ss_pred HHHHHHHc--CCHHHHHHHHHHHhcCCC--------------HHHHHHHHHHHHHcCC---HHHHHHHHHHHHH------
Q 019734 127 SFLKGAAR--GSTLAMVDAGLMYWEMDK--------------KEAAISLYRQAAVLGD---PAGQFNLGISYLQ------ 181 (336)
Q Consensus 127 ~~~~A~~~--~~~~a~~~lg~~~~~~~~--------------~~~A~~~~~~a~~~~~---~~a~~~Lg~~~~~------ 181 (336)
.|++++.. -+++.|+..+..+...++ .+++...|+++++.-. ...++.+++.-..
T Consensus 267 ayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~ 346 (656)
T KOG1914|consen 267 AYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNK 346 (656)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccch
Confidence 35555543 367777665555544444 7788888888876522 2222222222211
Q ss_pred -HHHHHHHHHHHHc---CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCcccHHHHH
Q 019734 182 -EEAVKLLYQASIA---GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQAR 257 (336)
Q Consensus 182 -~~A~~~~~ka~~~---~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~g~~~~~~~A~ 257 (336)
++-...++++... +.+-++..+=..-.. ..=...|+..|.+|-+.+...-+..++.++..-. ..+|..-|.
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR----~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~-cskD~~~Af 421 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRR----AEGLKAARKIFKKAREDKRTRHHVFVAAALMEYY-CSKDKETAF 421 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHH----hhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHH-hcCChhHHH
Confidence 4455556665443 233344444333333 2235778888888866543332222222222211 245899999
Q ss_pred HHHHHHHHc-CC-HHHHHHHHHHhhccCCHHHHHHHHHHHHHc--CcHHHHHHHHHHHhh
Q 019734 258 KWMKRAADC-GH-GKAQLEHGLGLFTEGEMMKAVVYLELATRA--GETAADHVKNVILQQ 313 (336)
Q Consensus 258 ~~~~~a~~~-~~-~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~--~~~~a~~~~~~~~~~ 313 (336)
..|+..+.. ++ +.--+..-..+...++-..+...|++++.. ....+......++..
T Consensus 422 rIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~y 481 (656)
T KOG1914|consen 422 RIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEY 481 (656)
T ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHH
Confidence 999998875 33 333344444566688888999999999876 444555555444443
No 255
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.11 E-value=5.6 Score=35.10 Aligned_cols=109 Identities=17% Similarity=0.029 Sum_probs=70.3
Q ss_pred cCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHH--H----HHHHHHH
Q 019734 118 RKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAV-LGDPAGQFNLGISYL--Q----EEAVKLL 188 (336)
Q Consensus 118 ~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~-~~~~~a~~~Lg~~~~--~----~~A~~~~ 188 (336)
.+++.+|...|..+... .+.++...|+.+|...|+.+.|...+...-. ..+..++-..+.+-. + .+....-
T Consensus 147 ~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~~l~ 226 (304)
T COG3118 147 AEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQDLQ 226 (304)
T ss_pred ccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 46788888888887765 4677888888888888888888887776432 222222221121111 1 2222222
Q ss_pred HHH-HHcCCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHC
Q 019734 189 YQA-SIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG 230 (336)
Q Consensus 189 ~ka-~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~ 230 (336)
++. .+.++.++-+.|+..+.. .++.+.|.+.+-..+..
T Consensus 227 ~~~aadPdd~~aa~~lA~~~~~----~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 227 RRLAADPDDVEAALALADQLHL----VGRNEAALEHLLALLRR 265 (304)
T ss_pred HHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHh
Confidence 333 345789999999999887 78999999887666543
No 256
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=92.65 E-value=0.14 Score=27.52 Aligned_cols=29 Identities=24% Similarity=0.414 Sum_probs=22.4
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 019734 138 LAMVDAGLMYWEMDKKEAAISLYRQAAVL 166 (336)
Q Consensus 138 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~ 166 (336)
.+++.+|.++...+++++|+.+|+++++.
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 45677888888888888888888887753
No 257
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=92.54 E-value=4.2 Score=33.91 Aligned_cols=86 Identities=19% Similarity=0.066 Sum_probs=54.6
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHH----HHHHHHHHHHHHcC--CHHHHHHHHHHHh
Q 019734 142 DAGLMYWEMDKKEAAISLYRQAAVLGD-------PAGQFNLGISYLQ----EEAVKLLYQASIAG--HVRAQYQLALCLH 208 (336)
Q Consensus 142 ~lg~~~~~~~~~~~A~~~~~~a~~~~~-------~~a~~~Lg~~~~~----~~A~~~~~ka~~~~--~~~a~~~lg~~~~ 208 (336)
.=|.-++..|++++|..-|..|++.=. ...+.+-|.++.. +.|+.-..||++++ +-.|...-+.+|.
T Consensus 100 ~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeaye 179 (271)
T KOG4234|consen 100 KEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYE 179 (271)
T ss_pred HHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHH
Confidence 346677889999999999999987521 1223333444433 66666666776664 4456666666666
Q ss_pred cCCCCccCHHHHHHHHHHHHHCC
Q 019734 209 RGRGVDFNLQEAARWYLRAAEGG 231 (336)
Q Consensus 209 ~g~g~~~~~~~A~~~~~~a~~~~ 231 (336)
. ...++.|+.-|++..+.+
T Consensus 180 k----~ek~eealeDyKki~E~d 198 (271)
T KOG4234|consen 180 K----MEKYEEALEDYKKILESD 198 (271)
T ss_pred h----hhhHHHHHHHHHHHHHhC
Confidence 5 556666666666665443
No 258
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=92.49 E-value=0.7 Score=28.24 Aligned_cols=31 Identities=23% Similarity=0.301 Sum_probs=26.3
Q ss_pred HHHHHHHhhccCCHHHHHHHHHHHHHcCcHH
Q 019734 272 QLEHGLGLFTEGEMMKAVVYLELATRAGETA 302 (336)
Q Consensus 272 ~~~lg~~~~~~~~~~~A~~~~~~A~~~~~~~ 302 (336)
.++|+..|.+.||.+.|...++..+..++..
T Consensus 2 kLdLA~ayie~Gd~e~Ar~lL~evl~~~~~~ 32 (44)
T TIGR03504 2 KLDLARAYIEMGDLEGARELLEEVIEEGDEA 32 (44)
T ss_pred chHHHHHHHHcCChHHHHHHHHHHHHcCCHH
Confidence 3688999999999999999999988766543
No 259
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=92.29 E-value=4.6 Score=36.59 Aligned_cols=168 Identities=15% Similarity=0.068 Sum_probs=101.2
Q ss_pred HHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcC------CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc---CC--H
Q 019734 101 AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG------STLAMVDAGLMYWEMDKKEAAISLYRQAAVL---GD--P 169 (336)
Q Consensus 101 ~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~~------~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~--~ 169 (336)
...+..++.+... .|.++.|...+.++...+ .+...+.-+.+++..|+..+|+..++..++. +. .
T Consensus 146 ~~~~l~~a~~aRk----~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~ 221 (352)
T PF02259_consen 146 AETWLKFAKLARK----AGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDS 221 (352)
T ss_pred HHHHHHHHHHHHH----CCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccc
Confidence 3455555665555 578888888888887755 6788888889999999999999988887762 11 1
Q ss_pred HHHHHHHHHH--HH----HHHHHHHHHHHHcCCHHHHHHHHHHHhcC--CCCccCHHHHHHHHHHHHHC--CCHHHHHHH
Q 019734 170 AGQFNLGISY--LQ----EEAVKLLYQASIAGHVRAQYQLALCLHRG--RGVDFNLQEAARWYLRAAEG--GYVRAMYNT 239 (336)
Q Consensus 170 ~a~~~Lg~~~--~~----~~A~~~~~ka~~~~~~~a~~~lg~~~~~g--~g~~~~~~~A~~~~~~a~~~--~~~~a~~~l 239 (336)
.....+...+ .. ........ ......+++.+|.....- .-...+.+.+...|+.+++. ....+++.+
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~ 298 (352)
T PF02259_consen 222 ISNAELKSGLLESLEVISSTNLDKES---KELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSW 298 (352)
T ss_pred ccHHHHhhccccccccccccchhhhh---HHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHH
Confidence 1111111100 00 00000000 001235566666665541 01147889999999999765 456788888
Q ss_pred HHHHHcCCCC-------------cccHHHHHHHHHHHHHcCCHHHHHHH
Q 019734 240 SLCYSFGEGL-------------PLSHRQARKWMKRAADCGHGKAQLEH 275 (336)
Q Consensus 240 g~~~~~~~g~-------------~~~~~~A~~~~~~a~~~~~~~a~~~l 275 (336)
|..+..-... ..-...|+..|-+++..|+....-.+
T Consensus 299 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~~~~~~~ 347 (352)
T PF02259_consen 299 ALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSKYVRQDL 347 (352)
T ss_pred HHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCCchHHHh
Confidence 8877543110 11235699999999998776544433
No 260
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=92.13 E-value=0.64 Score=29.71 Aligned_cols=45 Identities=20% Similarity=0.279 Sum_probs=34.3
Q ss_pred HHHHHHHHHhhccCCHHHHHHHHHHHHHc--CcHHHHHHHHHHHhhc
Q 019734 270 KAQLEHGLGLFTEGEMMKAVVYLELATRA--GETAADHVKNVILQQL 314 (336)
Q Consensus 270 ~a~~~lg~~~~~~~~~~~A~~~~~~A~~~--~~~~a~~~~~~~~~~~ 314 (336)
+..|.|+..+++.|++++|..+.+.+++. ++..+......+...+
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~~~i 48 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIEDKI 48 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHH
Confidence 34688999999999999999999999876 4667777766665544
No 261
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=91.95 E-value=0.2 Score=26.65 Aligned_cols=24 Identities=17% Similarity=0.080 Sum_probs=16.5
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHH
Q 019734 138 LAMVDAGLMYWEMDKKEAAISLYR 161 (336)
Q Consensus 138 ~a~~~lg~~~~~~~~~~~A~~~~~ 161 (336)
.+.+.||.++...||+++|...++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 355667777777777777776654
No 262
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=91.87 E-value=1.4 Score=34.06 Aligned_cols=85 Identities=11% Similarity=0.116 Sum_probs=65.3
Q ss_pred CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCC----HHHHHHHHHHhhccCCHHHHHHHHHHHHHc--CcHHHH
Q 019734 231 GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGH----GKAQLEHGLGLFTEGEMMKAVVYLELATRA--GETAAD 304 (336)
Q Consensus 231 ~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~~~----~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~--~~~~a~ 304 (336)
-.....+++++++-... -..|.++.+..++..+...+ -+..|.|+..+++.++|+++..+....++. ++..+.
T Consensus 30 ~s~~s~f~lAwaLV~S~-~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~ 108 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSR-DTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQAL 108 (149)
T ss_pred chHHHHHHHHHHHHccc-chHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 34677889998885543 35688899999999886333 344588999999999999999999999875 567777
Q ss_pred HHHHHHHhhcCh
Q 019734 305 HVKNVILQQLSA 316 (336)
Q Consensus 305 ~~~~~~~~~~~~ 316 (336)
.....+...++.
T Consensus 109 ~Lk~~ied~itk 120 (149)
T KOG3364|consen 109 ELKETIEDKITK 120 (149)
T ss_pred HHHHHHHHHHhh
Confidence 777777666544
No 263
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=91.84 E-value=0.48 Score=41.79 Aligned_cols=55 Identities=20% Similarity=0.212 Sum_probs=28.6
Q ss_pred CHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHH--HcCCHHHHHH
Q 019734 120 NLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAA--VLGDPAGQFN 174 (336)
Q Consensus 120 ~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~--~~~~~~a~~~ 174 (336)
+.++|...|+-|+.+ .+++++..+|.+....++.-+|-.+|-+|+ .+++.+|+.+
T Consensus 131 k~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvn 189 (472)
T KOG3824|consen 131 KLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVN 189 (472)
T ss_pred chHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhh
Confidence 555555555555544 355555555555555555555555555543 3345554444
No 264
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=91.81 E-value=0.22 Score=26.50 Aligned_cols=24 Identities=25% Similarity=0.332 Sum_probs=20.0
Q ss_pred HHHHHHHHHhhccCCHHHHHHHHH
Q 019734 270 KAQLEHGLGLFTEGEMMKAVVYLE 293 (336)
Q Consensus 270 ~a~~~lg~~~~~~~~~~~A~~~~~ 293 (336)
.+.++||.++...|++++|..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 467888999999999999988875
No 265
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=91.70 E-value=9 Score=33.88 Aligned_cols=68 Identities=16% Similarity=0.074 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHH----HHHHHHHHH
Q 019734 122 DKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQ----EEAVKLLYQ 190 (336)
Q Consensus 122 ~~A~~~~~~A~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~----~~A~~~~~k 190 (336)
+.-.+|+.+.+.. ..+..+.-+.-....+++.+|...|..+.+. ++.++...|+.+|.. +.|...+..
T Consensus 120 sqlr~~ld~~~~~-~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~ 193 (304)
T COG3118 120 SQLRQFLDKVLPA-EEEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAA 193 (304)
T ss_pred HHHHHHHHHhcCh-HHHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHh
Confidence 3445555555443 2333444555666789999999999999865 678899999999987 556666654
No 266
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=91.59 E-value=0.89 Score=37.77 Aligned_cols=60 Identities=22% Similarity=0.181 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHc---CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc---C---CHHHHHHHHHHHHH
Q 019734 121 LDKALDSFLKGAAR---GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL---G---DPAGQFNLGISYLQ 181 (336)
Q Consensus 121 ~~~A~~~~~~A~~~---~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~---~~~a~~~Lg~~~~~ 181 (336)
.+.|..-|.++-.. .+++.++.||..|. ..|.++++.+|.++++. + +++.+..|+.+|..
T Consensus 122 d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~ 190 (203)
T PF11207_consen 122 DQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQK 190 (203)
T ss_pred cHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Confidence 34555555544332 35666666666553 55666666666666543 1 45556666666654
No 267
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=90.95 E-value=1.8 Score=33.95 Aligned_cols=59 Identities=14% Similarity=0.090 Sum_probs=38.1
Q ss_pred HHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 019734 102 MVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAA 164 (336)
Q Consensus 102 ~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~ 164 (336)
.+...++..+.. .+++++|+.++++++... +..++..+-.+|...|+..+|+..|++..
T Consensus 63 ~~~~~l~~~~~~----~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 63 DALERLAEALLE----AGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp HHHHHHHHHHHH----TT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh----ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 344555555555 467777777777777663 56677777777777777777777777654
No 268
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=90.90 E-value=0.84 Score=40.35 Aligned_cols=71 Identities=15% Similarity=0.144 Sum_probs=61.3
Q ss_pred HHHHHhcCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHH
Q 019734 69 LNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGL 145 (336)
Q Consensus 69 l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~ 145 (336)
+..+.....+|+.++|..++...+..+|. +++++..+|..... .+++-+|-.+|-+|+.. ++.+|+.+..+
T Consensus 120 l~~A~~~~~~Gk~ekA~~lfeHAlalaP~--~p~~L~e~G~f~E~----~~~iv~ADq~Y~~ALtisP~nseALvnR~R 192 (472)
T KOG3824|consen 120 LKAAGRSRKDGKLEKAMTLFEHALALAPT--NPQILIEMGQFREM----HNEIVEADQCYVKALTISPGNSEALVNRAR 192 (472)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHhcCCC--CHHHHHHHhHHHHh----hhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence 56666778999999999999999999988 89999999999888 58999999999999865 78888877553
No 269
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=90.57 E-value=6.9 Score=30.51 Aligned_cols=62 Identities=18% Similarity=0.059 Sum_probs=47.8
Q ss_pred CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhccCCHHHHHHHHHHHHH
Q 019734 232 YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATR 297 (336)
Q Consensus 232 ~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~ 297 (336)
...+...++..+.. .+++++|+.++++++.. -+..++..|-.+|...|+..+|...|++..+
T Consensus 61 ~~~~~~~l~~~~~~----~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 61 YLDALERLAEALLE----AGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHHHH----TT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh----ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 34566677776654 33999999999999986 4567888999999999999999999999865
No 270
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=90.55 E-value=12 Score=33.12 Aligned_cols=63 Identities=11% Similarity=-0.006 Sum_probs=27.9
Q ss_pred HHHHHHHHhcCCCCccCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc
Q 019734 200 QYQLALCLHRGRGVDFNLQEAARWYLRAA-EGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC 266 (336)
Q Consensus 200 ~~~lg~~~~~g~g~~~~~~~A~~~~~~a~-~~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~ 266 (336)
...|+.+|.. .+.....++|....+.+- +-++....+.|..-...+ ..+.+.+.+.+.+.+..
T Consensus 87 L~~La~~~l~-~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~---~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 87 LRLLANAYLE-WDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLK---SFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHc-CCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhc---cCChhHHHHHHHHHHHh
Confidence 4455555543 222334444555444442 223433333333333332 22566666666665553
No 271
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=90.53 E-value=16 Score=35.10 Aligned_cols=145 Identities=12% Similarity=0.012 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHcC---CHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCCcccHHH
Q 019734 182 EEAVKLLYQASIAG---HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG---GYVRAMYNTSLCYSFGEGLPLSHRQ 255 (336)
Q Consensus 182 ~~A~~~~~ka~~~~---~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~~~g~~~~~~~ 255 (336)
+++..+|+++++.- +.-.++.++..-+.-.++. .+++--..|++.... ...-++..+=....+.. -.+.
T Consensus 310 ~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n-~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~e----Glka 384 (656)
T KOG1914|consen 310 DEAASIYERAIEGLLKENKLLYFALADYEESRYDDN-KEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAE----GLKA 384 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccc-hhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhh----hHHH
Confidence 78889999887752 2233334443333211212 466777778777543 23333333333333334 4778
Q ss_pred HHHHHHHHHHcCCHH--HH--HHHHHHhhccCCHHHHHHHHHHHHHcCcHHHHHHHHHHHhhcChhcHHHHHHHHHHhhc
Q 019734 256 ARKWMKRAADCGHGK--AQ--LEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWRA 331 (336)
Q Consensus 256 A~~~~~~a~~~~~~~--a~--~~lg~~~~~~~~~~~A~~~~~~A~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 331 (336)
|...|.+|-+.+... .+ ..+- -|+..+|.+-|...|+.++..-.....+.+..+.....-++...++.++....+
T Consensus 385 aR~iF~kaR~~~r~~hhVfVa~A~m-Ey~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~ 463 (656)
T KOG1914|consen 385 ARKIFKKAREDKRTRHHVFVAAALM-EYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLT 463 (656)
T ss_pred HHHHHHHHhhccCCcchhhHHHHHH-HHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHh
Confidence 899999987753322 22 2222 366799999999999999986333333333322222222333445555555554
Q ss_pred C
Q 019734 332 M 332 (336)
Q Consensus 332 ~ 332 (336)
.
T Consensus 464 s 464 (656)
T KOG1914|consen 464 S 464 (656)
T ss_pred c
Confidence 3
No 272
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=90.10 E-value=3.1 Score=34.66 Aligned_cols=85 Identities=20% Similarity=0.146 Sum_probs=60.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHH---cCCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHC------CCHHHHH
Q 019734 167 GDPAGQFNLGISYLQEEAVKLLYQASI---AGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG------GYVRAMY 237 (336)
Q Consensus 167 ~~~~a~~~Lg~~~~~~~A~~~~~ka~~---~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~------~~~~a~~ 237 (336)
.+|...|.+=.-+-.+.|..-|.++-. .++++.++.||..|.. .|..+++..|.++++. -+++...
T Consensus 108 ~dP~llYy~Wsr~~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~k-----rD~~Kt~~ll~~~L~l~~~~~~~n~eil~ 182 (203)
T PF11207_consen 108 QDPYLLYYHWSRFGDQEALRRFLQLEGTPELETAELQYALATYYTK-----RDPEKTIQLLLRALELSNPDDNFNPEILK 182 (203)
T ss_pred CCccHHHHHhhccCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHc-----cCHHHHHHHHHHHHHhcCCCCCCCHHHHH
Confidence 567665543222222788888877754 3578889999999874 7899999999998764 2578888
Q ss_pred HHHHHHHcCCCCcccHHHHHHHH
Q 019734 238 NTSLCYSFGEGLPLSHRQARKWM 260 (336)
Q Consensus 238 ~lg~~~~~~~g~~~~~~~A~~~~ 260 (336)
.|+.+|.. .+++++|--|.
T Consensus 183 sLas~~~~----~~~~e~AYiwa 201 (203)
T PF11207_consen 183 SLASIYQK----LKNYEQAYIWA 201 (203)
T ss_pred HHHHHHHH----hcchhhhhhhe
Confidence 89988865 33888887663
No 273
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=89.77 E-value=8.6 Score=34.79 Aligned_cols=163 Identities=13% Similarity=-0.070 Sum_probs=94.7
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC------CHHHHHHHHHHHHH----HHHHHHHHHHHHc---CC--HHHH
Q 019734 136 STLAMVDAGLMYWEMDKKEAAISLYRQAAVLG------DPAGQFNLGISYLQ----EEAVKLLYQASIA---GH--VRAQ 200 (336)
Q Consensus 136 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~------~~~a~~~Lg~~~~~----~~A~~~~~ka~~~---~~--~~a~ 200 (336)
....+..++.+....|.++.|...+.++...+ .+...+.-+.++.. .+|+..++..++. .. ....
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~ 224 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISN 224 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccH
Confidence 34567788888888999999999999988755 66777766776666 7888887777652 11 1111
Q ss_pred HHHHHHHhcCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcC--CCCcccHHHHHHHHHHHHHcC--CHHHHHHHH
Q 019734 201 YQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFG--EGLPLSHRQARKWMKRAADCG--HGKAQLEHG 276 (336)
Q Consensus 201 ~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~--~g~~~~~~~A~~~~~~a~~~~--~~~a~~~lg 276 (336)
..+...+.....+... ....... ......++..+|.+.... .-...+.+++...|+.++... ...+++.+|
T Consensus 225 ~~~~~~~~~~~~~~~~--~~~~~~~---~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a 299 (352)
T PF02259_consen 225 AELKSGLLESLEVISS--TNLDKES---KELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWA 299 (352)
T ss_pred HHHhhccccccccccc--cchhhhh---HHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHH
Confidence 1111110000000000 0000000 011235555566655442 001348999999999999863 456777777
Q ss_pred HHhhccC-----------------CHHHHHHHHHHHHHcCcHHH
Q 019734 277 LGLFTEG-----------------EMMKAVVYLELATRAGETAA 303 (336)
Q Consensus 277 ~~~~~~~-----------------~~~~A~~~~~~A~~~~~~~a 303 (336)
..+...= -...|+..|-+++..|+...
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~~~ 343 (352)
T PF02259_consen 300 LFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSKYV 343 (352)
T ss_pred HHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCCch
Confidence 7665421 12458889999999887743
No 274
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=89.75 E-value=12 Score=32.21 Aligned_cols=99 Identities=15% Similarity=0.002 Sum_probs=73.8
Q ss_pred HHHHHHHHHhcCCCCccCHHHHHHHHHHHHH----------CC----------CHHHHHHHHHHHHcCCCCcccHHHHHH
Q 019734 199 AQYQLALCLHRGRGVDFNLQEAARWYLRAAE----------GG----------YVRAMYNTSLCYSFGEGLPLSHRQARK 258 (336)
Q Consensus 199 a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~----------~~----------~~~a~~~lg~~~~~~~g~~~~~~~A~~ 258 (336)
+...-|+-+.. .+++++|...|+.|+- ++ ...-+.|...|++. ..++-++++
T Consensus 180 ~l~q~GN~lfk----~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~----~~e~yevle 251 (329)
T KOG0545|consen 180 VLHQEGNRLFK----LGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLK----KEEYYEVLE 251 (329)
T ss_pred HHHHhhhhhhh----hccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhh----HHHHHHHHH
Confidence 34444444444 6788888888877742 22 34557788888875 348888888
Q ss_pred HHHHHHHc--CCHHHHHHHHHHhhccCCHHHHHHHHHHHHHcCcHHHHH
Q 019734 259 WMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADH 305 (336)
Q Consensus 259 ~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~~~~a~~ 305 (336)
.-...+.. ++..++|.-|.++...=+.++|..-|.+++++.+.-+..
T Consensus 252 h~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasv 300 (329)
T KOG0545|consen 252 HCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASV 300 (329)
T ss_pred HHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHH
Confidence 88888764 788999999999988889999999999999998765443
No 275
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=89.68 E-value=18 Score=34.01 Aligned_cols=143 Identities=18% Similarity=0.067 Sum_probs=82.6
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHH-------------------------HHHHHHHHHHHH
Q 019734 140 MVDAGLMYWEMDKKEAAISLYRQAAVL-GDPAGQFNLGISYLQ-------------------------EEAVKLLYQASI 193 (336)
Q Consensus 140 ~~~lg~~~~~~~~~~~A~~~~~~a~~~-~~~~a~~~Lg~~~~~-------------------------~~A~~~~~ka~~ 193 (336)
...||.+++..+|++.|...|+.+..- .+-.++..+|-++.- +.|...|.++..
T Consensus 211 ~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~~~~ 290 (414)
T PF12739_consen 211 MRRLADLAFMLRDYELAYSTYRLLKKDFKNDKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLKSAL 290 (414)
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHhhhc
Confidence 456899999999999999999987643 444555555544433 445555555311
Q ss_pred ----c--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHH------CC---CHHHHHHHHHHH--HcCCCC---cccH
Q 019734 194 ----A--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAE------GG---YVRAMYNTSLCY--SFGEGL---PLSH 253 (336)
Q Consensus 194 ----~--~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~------~~---~~~a~~~lg~~~--~~~~g~---~~~~ 253 (336)
. .-.++....+.++.. .+.+.+|..++-+... .+ .+..+-.++.|| ...... ..+.
T Consensus 291 ~~~~~~~~a~R~~ll~~ell~~----~~~~~~a~~~~~~~~~~~l~~~l~~~~~alllE~~a~~~~~~~~~~~~~~~~r~ 366 (414)
T PF12739_consen 291 PRCSLPYYALRCALLLAELLKS----RGGYWEAADQLIRWTSEILESDLRPFGSALLLEQAAYCYASLRSNRPSPGLTRF 366 (414)
T ss_pred cccccccchHHHHHHHHHHHHh----cCccHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHhhcccccCCCCccchhh
Confidence 1 123445555555554 4555555555544422 22 344455666666 433111 1123
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHc
Q 019734 254 RQARKWMKRAADCGHGKAQLEHGLGLFTEGEMMKAVVYLELATRA 298 (336)
Q Consensus 254 ~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~ 298 (336)
.++..|+-.| |.-|...|....|..+|..|...
T Consensus 367 RK~af~~vLA------------g~~~~~~~~~~~a~rcy~~a~~v 399 (414)
T PF12739_consen 367 RKYAFHMVLA------------GHRYSKAGQKKHALRCYKQALQV 399 (414)
T ss_pred HHHHHHHHHH------------HHHHHHCCCHHHHHHHHHHHHHH
Confidence 4444444333 35577889999999999998764
No 276
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=89.27 E-value=0.98 Score=27.59 Aligned_cols=32 Identities=31% Similarity=0.325 Sum_probs=27.3
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHH
Q 019734 140 MVDAGLMYWEMDKKEAAISLYRQAAVLGDPAG 171 (336)
Q Consensus 140 ~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a 171 (336)
.++|+..|...||.+.|+..++..+..++...
T Consensus 2 kLdLA~ayie~Gd~e~Ar~lL~evl~~~~~~q 33 (44)
T TIGR03504 2 KLDLARAYIEMGDLEGARELLEEVIEEGDEAQ 33 (44)
T ss_pred chHHHHHHHHcCChHHHHHHHHHHHHcCCHHH
Confidence 46899999999999999999999997777543
No 277
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.20 E-value=13 Score=33.56 Aligned_cols=147 Identities=11% Similarity=-0.019 Sum_probs=91.5
Q ss_pred HHHhcCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc---CC---HHHHHHHH
Q 019734 71 KIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR---GS---TLAMVDAG 144 (336)
Q Consensus 71 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~---~~---~~a~~~lg 144 (336)
.+...+.+|++.+|.....++++.-|. +--++-.--.+++. .|+...-...+++.+.. +. ....-.++
T Consensus 109 ~aai~~~~g~~h~a~~~wdklL~d~Pt--Dlla~kfsh~a~fy----~G~~~~~k~ai~kIip~wn~dlp~~sYv~Gmya 182 (491)
T KOG2610|consen 109 KAAILWGRGKHHEAAIEWDKLLDDYPT--DLLAVKFSHDAHFY----NGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYA 182 (491)
T ss_pred hHHHhhccccccHHHHHHHHHHHhCch--hhhhhhhhhhHHHh----ccchhhhhhHHHHhccccCCCCcHHHHHHHHHH
Confidence 444557788888887666666666554 22333223333333 35666667777777765 22 22233566
Q ss_pred HHHhcCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHH----HHHHHHHHHHHHc---CC---HHHHHHHHHHHhcCCC
Q 019734 145 LMYWEMDKKEAAISLYRQAAVLGD--PAGQFNLGISYLQ----EEAVKLLYQASIA---GH---VRAQYQLALCLHRGRG 212 (336)
Q Consensus 145 ~~~~~~~~~~~A~~~~~~a~~~~~--~~a~~~Lg~~~~~----~~A~~~~~ka~~~---~~---~~a~~~lg~~~~~g~g 212 (336)
..+.+.|-+++|.+.-+++++.+. ..+.-.++.++.- .++.+..++.-+. +. ..-+...+.++.+
T Consensus 183 FgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE--- 259 (491)
T KOG2610|consen 183 FGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIE--- 259 (491)
T ss_pred hhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhc---
Confidence 667778899999999999987754 4444555555544 7777777766443 22 2234567777777
Q ss_pred CccCHHHHHHHHHHH
Q 019734 213 VDFNLQEAARWYLRA 227 (336)
Q Consensus 213 ~~~~~~~A~~~~~~a 227 (336)
...++.|.+.|.+-
T Consensus 260 -~aeye~aleIyD~e 273 (491)
T KOG2610|consen 260 -GAEYEKALEIYDRE 273 (491)
T ss_pred -ccchhHHHHHHHHH
Confidence 46788888888764
No 278
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=89.16 E-value=2 Score=31.96 Aligned_cols=94 Identities=10% Similarity=-0.007 Sum_probs=49.2
Q ss_pred HHHhcCCChhHHhhhHHHHHHHHHhCCCCC-HHHHHHHHHHHhcCCCCcCCH-------HHHHHHHHHHHHcC--CHHHH
Q 019734 71 KIAASFTLPQLRAASLVCKSWNDALRPLRE-AMVLLRWGKRFKHGRGVRKNL-------DKALDSFLKGAARG--STLAM 140 (336)
Q Consensus 71 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~a~~~lg~~~~~g~g~~~~~-------~~A~~~~~~A~~~~--~~~a~ 140 (336)
.+...+.+|++.+|..+-........+..+ +..+..-|.++..--....|+ -.|++.|.++..+. .+..+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L 81 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL 81 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence 355667889999998877777777665433 255555666664411222232 23344444444442 34444
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHH
Q 019734 141 VDAGLMYWEMDKKEAAISLYRQAA 164 (336)
Q Consensus 141 ~~lg~~~~~~~~~~~A~~~~~~a~ 164 (336)
+.||.-+-....+++++.-.++++
T Consensus 82 ~~la~~l~s~~~Ykk~v~kak~~L 105 (111)
T PF04781_consen 82 FELASQLGSVKYYKKAVKKAKRGL 105 (111)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHh
Confidence 555554433334444444444443
No 279
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=88.79 E-value=1.6 Score=38.29 Aligned_cols=58 Identities=12% Similarity=0.051 Sum_probs=44.5
Q ss_pred HHHHHHHHHHc--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHH
Q 019734 124 ALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQ 181 (336)
Q Consensus 124 A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~ 181 (336)
|..||.+|+.. ++...+++||.++...++.=.|+.+|-+++-. ..+.|..+|..++..
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 67889999886 67788899999998889999999999998744 456777777777653
No 280
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=88.12 E-value=7.7 Score=28.94 Aligned_cols=41 Identities=17% Similarity=0.095 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHH
Q 019734 183 EAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRA 227 (336)
Q Consensus 183 ~A~~~~~ka~~~--~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a 227 (336)
-++++|.++... ..+..+++||.-+.. ...|++++.--+++
T Consensus 62 ~sve~~s~a~~Lsp~~A~~L~~la~~l~s----~~~Ykk~v~kak~~ 104 (111)
T PF04781_consen 62 GSVECFSRAVELSPDSAHSLFELASQLGS----VKYYKKAVKKAKRG 104 (111)
T ss_pred HhHHHHHHHhccChhHHHHHHHHHHHhhh----HHHHHHHHHHHHHH
Confidence 345555555443 234445555555433 33344444444443
No 281
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=87.95 E-value=22 Score=32.85 Aligned_cols=242 Identities=16% Similarity=0.049 Sum_probs=133.2
Q ss_pred HHHHhcCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcC--CHHHHHHHHHHH
Q 019734 70 NKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMY 147 (336)
Q Consensus 70 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~ 147 (336)
-.+...+..|+++.|. +-++.-.+.+.-.-+-.-|++... .-.|+.+-|..|-+.|..+. -+-+...+=.-.
T Consensus 125 LeAQaal~eG~~~~Ar----~kfeAMl~dPEtRllGLRgLyleA--qr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r 198 (531)
T COG3898 125 LEAQAALLEGDYEDAR----KKFEAMLDDPETRLLGLRGLYLEA--QRLGAREAARHYAERAAEKAPQLPWAARATLEAR 198 (531)
T ss_pred HHHHHHHhcCchHHHH----HHHHHHhcChHHHHHhHHHHHHHH--HhcccHHHHHHHHHHHHhhccCCchHHHHHHHHH
Confidence 3444456778888884 444433232222222222322221 11578999999999998874 233333333333
Q ss_pred hcCCCHHHHHHHHHHHHHc-----CCH---HHHHHH--HHHHHH---HHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCC
Q 019734 148 WEMDKKEAAISLYRQAAVL-----GDP---AGQFNL--GISYLQ---EEAVKLLYQASIA--GHVRAQYQLALCLHRGRG 212 (336)
Q Consensus 148 ~~~~~~~~A~~~~~~a~~~-----~~~---~a~~~L--g~~~~~---~~A~~~~~ka~~~--~~~~a~~~lg~~~~~g~g 212 (336)
...||.+.|+++.....+. +.. .+-..- +..... ..|...-..+.++ +...+-..-+..+..
T Consensus 199 ~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~--- 275 (531)
T COG3898 199 CAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAPDLVPAAVVAARALFR--- 275 (531)
T ss_pred HhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHh---
Confidence 4679999999998765432 211 111111 111111 4455555555544 455666666667766
Q ss_pred CccCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH-----cCCHHHHHHHHHHhhccCCHH
Q 019734 213 VDFNLQEAARWYLRAAEG-GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAAD-----CGHGKAQLEHGLGLFTEGEMM 286 (336)
Q Consensus 213 ~~~~~~~A~~~~~~a~~~-~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~-----~~~~~a~~~lg~~~~~~~~~~ 286 (336)
.++..++-..++.+=.. .+++ ++.+|.... .-+.++.-++++.. .++.++.+.+...-+.-|++.
T Consensus 276 -d~~~rKg~~ilE~aWK~ePHP~----ia~lY~~ar----~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~ 346 (531)
T COG3898 276 -DGNLRKGSKILETAWKAEPHPD----IALLYVRAR----SGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFS 346 (531)
T ss_pred -ccchhhhhhHHHHHHhcCCChH----HHHHHHHhc----CCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchH
Confidence 67788888888777432 2232 333343322 22334444444432 467777788888888888888
Q ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHhhcChhcHHHHHHHHHHh
Q 019734 287 KAVVYLELATRAGETAADHVKNVILQQLSATSRDRAMLVVDSW 329 (336)
Q Consensus 287 ~A~~~~~~A~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~ 329 (336)
.|..--+.+.+..+-+..+.+-.-...-+-++..++..-..+-
T Consensus 347 ~ARa~Aeaa~r~~pres~~lLlAdIeeAetGDqg~vR~wlAqa 389 (531)
T COG3898 347 AARAKAEAAAREAPRESAYLLLADIEEAETGDQGKVRQWLAQA 389 (531)
T ss_pred HHHHHHHHHhhhCchhhHHHHHHHHHhhccCchHHHHHHHHHH
Confidence 8888888888877666665554333333444555555544433
No 282
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=87.91 E-value=8.2 Score=31.58 Aligned_cols=94 Identities=18% Similarity=0.118 Sum_probs=65.1
Q ss_pred CHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc----
Q 019734 196 HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGG-----YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC---- 266 (336)
Q Consensus 196 ~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~~-----~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~---- 266 (336)
...++..+|..|.. .||.+.|++.|.++.+.. -.+.++++-.+... .+|+.....+..++-..
T Consensus 35 ir~~~~~l~~~~~~----~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~----~~d~~~v~~~i~ka~~~~~~~ 106 (177)
T PF10602_consen 35 IRMALEDLADHYCK----IGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIF----FGDWSHVEKYIEKAESLIEKG 106 (177)
T ss_pred HHHHHHHHHHHHHH----hhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHHhcc
Confidence 35688899999998 899999999999986542 12333333333322 23888888888888542
Q ss_pred CCHHHH----HHHHHHhhccCCHHHHHHHHHHHHH
Q 019734 267 GHGKAQ----LEHGLGLFTEGEMMKAVVYLELATR 297 (336)
Q Consensus 267 ~~~~a~----~~lg~~~~~~~~~~~A~~~~~~A~~ 297 (336)
++++.. ..-|..+...++|.+|...|-.+..
T Consensus 107 ~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 107 GDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred chHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCc
Confidence 444433 2346666778999999999988764
No 283
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=87.66 E-value=5.2 Score=28.82 Aligned_cols=47 Identities=23% Similarity=0.046 Sum_probs=33.7
Q ss_pred cHHHHHHHHHHHHHc----C-------CHHHHHHHHHHhhccCCHHHHHHHHHHHHHc
Q 019734 252 SHRQARKWMKRAADC----G-------HGKAQLEHGLGLFTEGEMMKAVVYLELATRA 298 (336)
Q Consensus 252 ~~~~A~~~~~~a~~~----~-------~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~ 298 (336)
|+..|++.+.+..+. + ...+..+++.++...|++++|+..+++|++.
T Consensus 13 dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 13 DYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred CHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 667776666665541 1 1345678888888899999999999998864
No 284
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.41 E-value=13 Score=35.21 Aligned_cols=100 Identities=15% Similarity=0.045 Sum_probs=66.6
Q ss_pred HHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHC----C-----CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--
Q 019734 198 RAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG----G-----YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC-- 266 (336)
Q Consensus 198 ~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~----~-----~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~-- 266 (336)
.....||.++..- .+|.+.|...+++|-.. + -.++...|+.+|... .+.+..+...++++++.
T Consensus 47 rt~LqLg~lL~~y---T~N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~---~~s~~~~KalLrkaielsq 120 (629)
T KOG2300|consen 47 RTHLQLGALLLRY---TKNVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQL---AQSFPPAKALLRKAIELSQ 120 (629)
T ss_pred HHHHHHHHHHHHH---hccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHh---cCCCchHHHHHHHHHHHhc
Confidence 3445566554421 67888888888887432 1 235666778888653 33788888999999884
Q ss_pred CCH----HHHHHHHHHhhccCCHHHHHHHHHHHHHcCcHHH
Q 019734 267 GHG----KAQLEHGLGLFTEGEMMKAVVYLELATRAGETAA 303 (336)
Q Consensus 267 ~~~----~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~~~~a 303 (336)
+.+ .-.+.|+.++.-..|+..|.+.+.-+.+.-++..
T Consensus 121 ~~p~wsckllfQLaql~~idkD~~sA~elLavga~sAd~~~ 161 (629)
T KOG2300|consen 121 SVPYWSCKLLFQLAQLHIIDKDFPSALELLAVGAESADHIC 161 (629)
T ss_pred CCchhhHHHHHHHHHHHhhhccchhHHHHHhccccccchhh
Confidence 332 2237888888888999999998666665544433
No 285
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=86.75 E-value=2.6 Score=37.75 Aligned_cols=82 Identities=16% Similarity=0.051 Sum_probs=48.6
Q ss_pred ccCHHHHHHHHHHHHHCC--C----HHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhccCCH
Q 019734 214 DFNLQEAARWYLRAAEGG--Y----VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEM 285 (336)
Q Consensus 214 ~~~~~~A~~~~~~a~~~~--~----~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~ 285 (336)
.++|..|+..|.+++... + ...+.|.+.+... -+|+..|+.--.+++.. .+..+++.-+.++++...+
T Consensus 94 ~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~----l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe~~ 169 (390)
T KOG0551|consen 94 EKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLY----LGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLELERF 169 (390)
T ss_pred hhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHH----HHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHHHHH
Confidence 566666666666665431 1 2234444444432 22666666666666653 4566666777777777777
Q ss_pred HHHHHHHHHHHHcC
Q 019734 286 MKAVVYLELATRAG 299 (336)
Q Consensus 286 ~~A~~~~~~A~~~~ 299 (336)
++|..|.+..+...
T Consensus 170 ~~a~nw~ee~~~~d 183 (390)
T KOG0551|consen 170 AEAVNWCEEGLQID 183 (390)
T ss_pred HHHHHHHhhhhhhh
Confidence 77777777665543
No 286
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=86.63 E-value=6 Score=30.68 Aligned_cols=41 Identities=17% Similarity=0.119 Sum_probs=29.9
Q ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 019734 135 GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAGQFNL 175 (336)
Q Consensus 135 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~L 175 (336)
.+|+.+..+|..|...|+..++-+++++|.+.|-.+|+.++
T Consensus 118 ~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~kEAC~nI 158 (161)
T PF09205_consen 118 INPEFLVKIANAYKKLGNTREANELLKEACEKGLKEACRNI 158 (161)
T ss_dssp S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchHHHHHHh
Confidence 46777788888888888888888888888888888877654
No 287
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=86.45 E-value=0.42 Score=42.76 Aligned_cols=47 Identities=17% Similarity=0.237 Sum_probs=22.4
Q ss_pred CHHHHHHHHHHHHHcC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 019734 120 NLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVL 166 (336)
Q Consensus 120 ~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~ 166 (336)
++++|+..|..|+.++ ....+...+.++...+....|++-+..|++.
T Consensus 129 ~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei 177 (377)
T KOG1308|consen 129 EFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI 177 (377)
T ss_pred chhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhcc
Confidence 4555555555555442 2233334445555555555555555555443
No 288
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=86.38 E-value=29 Score=34.89 Aligned_cols=37 Identities=14% Similarity=-0.099 Sum_probs=17.9
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCHHHHHHHHHH
Q 019734 252 SHRQARKWMKRAADCGHGKAQLEHGLGLFTEGEMMKAVVYLEL 294 (336)
Q Consensus 252 ~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~ 294 (336)
+++.|.+.|.++-.-.+ .-..|-+.|++++|.+.-++
T Consensus 780 dfe~ae~lf~e~~~~~d------ai~my~k~~kw~da~kla~e 816 (1636)
T KOG3616|consen 780 DFEIAEELFTEADLFKD------AIDMYGKAGKWEDAFKLAEE 816 (1636)
T ss_pred hHHHHHHHHHhcchhHH------HHHHHhccccHHHHHHHHHH
Confidence 66666666655422111 11234456666666555443
No 289
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=86.32 E-value=4 Score=26.02 Aligned_cols=37 Identities=8% Similarity=-0.059 Sum_probs=25.2
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHH--cCCHHHHHH
Q 019734 138 LAMVDAGLMYWEMDKKEAAISLYRQAAV--LGDPAGQFN 174 (336)
Q Consensus 138 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~ 174 (336)
+.+|.++..++..|++++|..+...+++ +++..+...
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L 40 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSL 40 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 3467788888888888888888888764 466666543
No 290
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=86.20 E-value=2.8 Score=36.68 Aligned_cols=58 Identities=14% Similarity=0.023 Sum_probs=34.4
Q ss_pred HHHHHHHHH--HCCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhc
Q 019734 220 AARWYLRAA--EGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFT 281 (336)
Q Consensus 220 A~~~~~~a~--~~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~ 281 (336)
|+.||.+|. .++.+..++.||.++... ++.-.|+-||-|++-- ..+.+..||..++.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~----~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQ----GDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHT----T-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccc----cchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 566777774 346677777777777542 2667777777777642 345566666665544
No 291
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=85.69 E-value=9.4 Score=29.64 Aligned_cols=89 Identities=16% Similarity=0.054 Sum_probs=51.1
Q ss_pred ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHH--HcCCHHHHHHHHHHhhccCCHHHHHHH
Q 019734 214 DFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAA--DCGHGKAQLEHGLGLFTEGEMMKAVVY 291 (336)
Q Consensus 214 ~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~--~~~~~~a~~~lg~~~~~~~~~~~A~~~ 291 (336)
-++...-+.+|-+ .+-..-++.++.-+....| ..++=...++... +.-+|.....+|.+|.+.|+..++-..
T Consensus 69 C~NlKrVi~C~~~---~n~~se~vD~ALd~lv~~~---kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~el 142 (161)
T PF09205_consen 69 CGNLKRVIECYAK---RNKLSEYVDLALDILVKQG---KKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANEL 142 (161)
T ss_dssp -S-THHHHHHHHH---TT---HHHHHHHHHHHHTT----HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHH
T ss_pred hcchHHHHHHHHH---hcchHHHHHHHHHHHHHhc---cHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHH
Confidence 3455555555543 2323334444444443222 3333333444333 235678889999999999999999999
Q ss_pred HHHHHHcCcHHHHHHHH
Q 019734 292 LELATRAGETAADHVKN 308 (336)
Q Consensus 292 ~~~A~~~~~~~a~~~~~ 308 (336)
+.+|++.|-.+|+.+..
T Consensus 143 l~~ACekG~kEAC~nIn 159 (161)
T PF09205_consen 143 LKEACEKGLKEACRNIN 159 (161)
T ss_dssp HHHHHHTT-HHHHHHHH
T ss_pred HHHHHHhchHHHHHHhc
Confidence 99999999999987653
No 292
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=84.99 E-value=8 Score=27.81 Aligned_cols=48 Identities=17% Similarity=0.190 Sum_probs=31.8
Q ss_pred CCHHHHHHHHHHHHHc----C-------CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 019734 119 KNLDKALDSFLKGAAR----G-------STLAMVDAGLMYWEMDKKEAAISLYRQAAVL 166 (336)
Q Consensus 119 ~~~~~A~~~~~~A~~~----~-------~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~ 166 (336)
+|+..|++.+.+.... + ...+..+++.++...|++++|+..++.|+..
T Consensus 12 ~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 12 GDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred CCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4666665555544331 1 1356777888888888888888888888743
No 293
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=84.98 E-value=1.8 Score=29.86 Aligned_cols=34 Identities=29% Similarity=0.345 Sum_probs=23.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 019734 120 NLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL 166 (336)
Q Consensus 120 ~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~ 166 (336)
|+++|+.+..+|+..+ ..|++++|+.+|.+|++.
T Consensus 2 ~l~kai~Lv~~A~~eD-------------~~gny~eA~~lY~~ale~ 35 (75)
T cd02680 2 DLERAHFLVTQAFDED-------------EKGNAEEAIELYTEAVEL 35 (75)
T ss_pred CHHHHHHHHHHHHHhh-------------HhhhHHHHHHHHHHHHHH
Confidence 4567777777776554 457788888888887753
No 294
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=84.74 E-value=15 Score=27.88 Aligned_cols=92 Identities=15% Similarity=0.159 Sum_probs=46.0
Q ss_pred HHHHHhcCCChhHHhhhHHHHHHHHHhCCCC----------CHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHH------
Q 019734 69 LNKIAASFTLPQLRAASLVCKSWNDALRPLR----------EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGA------ 132 (336)
Q Consensus 69 l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~----------~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~------ 132 (336)
+-.+-..+..|-+.+|...|++..+.....+ ++..+-.|...+.. .+++++++.--++|+
T Consensus 13 Ls~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~----Lgry~e~L~sA~~aL~YFNRR 88 (144)
T PF12968_consen 13 LSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAG----LGRYDECLQSADRALRYFNRR 88 (144)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHH----TT-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHh----hccHHHHHHHHHHHHHHHhhc
Confidence 4445555677778888888887777654322 12223333333333 345544443333333
Q ss_pred -HcC------CHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 019734 133 -ARG------STLAMVDAGLMYWEMDKKEAAISLYRQAA 164 (336)
Q Consensus 133 -~~~------~~~a~~~lg~~~~~~~~~~~A~~~~~~a~ 164 (336)
++. ...+.++.+..+...|+.++|+..|+.+.
T Consensus 89 GEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~ag 127 (144)
T PF12968_consen 89 GELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAG 127 (144)
T ss_dssp --TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred cccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 221 22345555666666666666666666664
No 295
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=84.62 E-value=17 Score=29.77 Aligned_cols=60 Identities=10% Similarity=0.051 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 019734 101 AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG-----STLAMVDAGLMYWEMDKKEAAISLYRQAA 164 (336)
Q Consensus 101 ~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~~-----~~~a~~~lg~~~~~~~~~~~A~~~~~~a~ 164 (336)
.+++..+|..|.. .||.+.|++.|.++-... -.+.++.+-.+....+|+.....++.++-
T Consensus 36 r~~~~~l~~~~~~----~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 36 RMALEDLADHYCK----IGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHHH----hhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 4677788888888 578889999888876542 23556666777777788888888877764
No 296
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=84.39 E-value=16 Score=27.79 Aligned_cols=79 Identities=19% Similarity=0.077 Sum_probs=46.6
Q ss_pred cCHHHHHHHHHHHHHCC--------------CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH-------cCCHH---
Q 019734 215 FNLQEAARWYLRAAEGG--------------YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAAD-------CGHGK--- 270 (336)
Q Consensus 215 ~~~~~A~~~~~~a~~~~--------------~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~-------~~~~~--- 270 (336)
+-+.+|..-+++|.+.. |.-++-.|+..+. +.| ++++++.-..+++. +..-+
T Consensus 23 g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~-~Lg---ry~e~L~sA~~aL~YFNRRGEL~qdeGkl 98 (144)
T PF12968_consen 23 GAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALA-GLG---RYDECLQSADRALRYFNRRGELHQDEGKL 98 (144)
T ss_dssp T-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHH-HTT----HHHHHHHHHHHHHHHHHH--TTSTHHHH
T ss_pred hhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHH-hhc---cHHHHHHHHHHHHHHHhhccccccccchh
Confidence 45677777777764420 2344555555553 333 66666655555553 32222
Q ss_pred ---HHHHHHHHhhccCCHHHHHHHHHHHHH
Q 019734 271 ---AQLEHGLGLFTEGEMMKAVVYLELATR 297 (336)
Q Consensus 271 ---a~~~lg~~~~~~~~~~~A~~~~~~A~~ 297 (336)
+-++-+..+...|..++|+..|+++.+
T Consensus 99 WIaaVfsra~Al~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 99 WIAAVFSRAVALEGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 335666667779999999999999976
No 297
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.19 E-value=21 Score=29.13 Aligned_cols=107 Identities=19% Similarity=0.230 Sum_probs=47.5
Q ss_pred CCHHHHHHHHHHHHHcC----CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHH---------HHH
Q 019734 119 KNLDKALDSFLKGAARG----STLAMVDAGLMYWEMDKKEAAISLYRQAAVL-GDPAGQFNLGISYLQ---------EEA 184 (336)
Q Consensus 119 ~~~~~A~~~~~~A~~~~----~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~-~~~~a~~~Lg~~~~~---------~~A 184 (336)
+..++|+.-|....+-| ...+.+..+.+....|+...|+..|..+..- ..|.....++++-.. +.-
T Consensus 72 ~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV 151 (221)
T COG4649 72 NKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDV 151 (221)
T ss_pred CCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHH
Confidence 34445555554444332 2344555555555555555555555554322 233333233222211 222
Q ss_pred HHHHHHHHHcCCH---HHHHHHHHHHhcCCCCccCHHHHHHHHHHHHH
Q 019734 185 VKLLYQASIAGHV---RAQYQLALCLHRGRGVDFNLQEAARWYLRAAE 229 (336)
Q Consensus 185 ~~~~~ka~~~~~~---~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~ 229 (336)
..-.+.....+++ .+--.||..-.. .+|+.+|..||...++
T Consensus 152 ~srvepLa~d~n~mR~sArEALglAa~k----agd~a~A~~~F~qia~ 195 (221)
T COG4649 152 SSRVEPLAGDGNPMRHSAREALGLAAYK----AGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHhhhccCCCChhHHHHHHHHhHHHHh----ccchHHHHHHHHHHHc
Confidence 2222222222222 233345554444 5777777777776654
No 298
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=83.77 E-value=41 Score=32.01 Aligned_cols=161 Identities=18% Similarity=0.129 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc-C-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 019734 101 AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR-G-STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAGQFNLGIS 178 (336)
Q Consensus 101 ~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~-~-~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~ 178 (336)
....|.++.+ .+|++++.++.+..--. . ...-...+...+...|-++.|+.+- .|++.-|.|+.-
T Consensus 264 ~~~~fk~av~-------~~d~~~v~~~i~~~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~------~D~~~rFeLAl~ 330 (443)
T PF04053_consen 264 SELEFKTAVL-------RGDFEEVLRMIAASNLLPNIPKDQGQSIARFLEKKGYPELALQFV------TDPDHRFELALQ 330 (443)
T ss_dssp HHHHHHHHHH-------TT-HHH-----HHHHTGGG--HHHHHHHHHHHHHTT-HHHHHHHS------S-HHHHHHHHHH
T ss_pred HHHHHHHHHH-------cCChhhhhhhhhhhhhcccCChhHHHHHHHHHHHCCCHHHHHhhc------CChHHHhHHHHh
Confidence 4455555555 46777766665422111 1 2233445566666667666665542 233333333322
Q ss_pred HHH-HHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCcccHHHHH
Q 019734 179 YLQ-EEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQAR 257 (336)
Q Consensus 179 ~~~-~~A~~~~~ka~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~g~~~~~~~A~ 257 (336)
+-. +.|. +-|-+.+++.-|..||..... .+|.+.|..+|+++ ++.. .|..+|.. .| +.++=.
T Consensus 331 lg~L~~A~---~~a~~~~~~~~W~~Lg~~AL~----~g~~~lAe~c~~k~---~d~~---~L~lLy~~-~g---~~~~L~ 393 (443)
T PF04053_consen 331 LGNLDIAL---EIAKELDDPEKWKQLGDEALR----QGNIELAEECYQKA---KDFS---GLLLLYSS-TG---DREKLS 393 (443)
T ss_dssp CT-HHHHH---HHCCCCSTHHHHHHHHHHHHH----TTBHHHHHHHHHHC---T-HH---HHHHHHHH-CT----HHHHH
T ss_pred cCCHHHHH---HHHHhcCcHHHHHHHHHHHHH----cCCHHHHHHHHHhh---cCcc---ccHHHHHH-hC---CHHHHH
Confidence 221 1111 112233567778888887777 78888888888874 2333 23333432 12 555555
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhhccCCHHHHHHHHHH
Q 019734 258 KWMKRAADCGHGKAQLEHGLGLFTEGEMMKAVVYLEL 294 (336)
Q Consensus 258 ~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~ 294 (336)
+....|...|+....+.-.. -.||.++.+..+.+
T Consensus 394 kl~~~a~~~~~~n~af~~~~---~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 394 KLAKIAEERGDINIAFQAAL---LLGDVEECVDLLIE 427 (443)
T ss_dssp HHHHHHHHTT-HHHHHHHHH---HHT-HHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHH---HcCCHHHHHHHHHH
Confidence 55566655666444433322 24666666655544
No 299
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=83.68 E-value=2.9 Score=24.25 Aligned_cols=30 Identities=7% Similarity=0.190 Sum_probs=21.3
Q ss_pred HHHHHHHHHhhccCCHHHHHHH--HHHHHHcC
Q 019734 270 KAQLEHGLGLFTEGEMMKAVVY--LELATRAG 299 (336)
Q Consensus 270 ~a~~~lg~~~~~~~~~~~A~~~--~~~A~~~~ 299 (336)
+..+.+|..+...|++++|++. |+-+...+
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld 33 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALD 33 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhc
Confidence 4567788888888999999998 44665543
No 300
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=83.50 E-value=1.7 Score=40.78 Aligned_cols=105 Identities=21% Similarity=0.113 Sum_probs=75.2
Q ss_pred ccCHHHHHHHHHHHHHCCCHH--HHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCC--HHHHHHHHHHhhccCCHHHHH
Q 019734 214 DFNLQEAARWYLRAAEGGYVR--AMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGH--GKAQLEHGLGLFTEGEMMKAV 289 (336)
Q Consensus 214 ~~~~~~A~~~~~~a~~~~~~~--a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~~~--~~a~~~lg~~~~~~~~~~~A~ 289 (336)
.++++.|+..|.+|++..... -+-+-+..+.+ ..++..|+.-+.+|++... ..+++.-|..+...+.+.+|.
T Consensus 17 ~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK----~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~ 92 (476)
T KOG0376|consen 17 DKVFDVAVDLYSKAIELDPNCAIYFANRALAHLK----VESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKAL 92 (476)
T ss_pred cchHHHHHHHHHHHHhcCCcceeeechhhhhhee----echhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHH
Confidence 689999999999999886533 34455566654 3399999999999998753 455667777778888888888
Q ss_pred HHHHHHHHcC--cHHHHHHHHHHHhhcChhcHHHH
Q 019734 290 VYLELATRAG--ETAADHVKNVILQQLSATSRDRA 322 (336)
Q Consensus 290 ~~~~~A~~~~--~~~a~~~~~~~~~~~~~~~~~~a 322 (336)
..|+...... .+.+......+....++...+.+
T Consensus 93 ~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~~~fe~a 127 (476)
T KOG0376|consen 93 LDLEKVKKLAPNDPDATRKIDECNKIVSEEKFEKA 127 (476)
T ss_pred HHHHHhhhcCcCcHHHHHHHHHHHHHHHHHhhhhc
Confidence 8888887754 45555555555555555444444
No 301
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.49 E-value=49 Score=32.71 Aligned_cols=75 Identities=16% Similarity=0.220 Sum_probs=57.3
Q ss_pred cCCHHHHHHHHHHHHHc--------CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHH----HH
Q 019734 118 RKNLDKALDSFLKGAAR--------GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLG--DPAGQFNLGISYLQ----EE 183 (336)
Q Consensus 118 ~~~~~~A~~~~~~A~~~--------~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~~~~----~~ 183 (336)
.+|+..+++||+..+.- ..+..+..|..+|....+.++|++++..|-+.+ ++-..+..-.+... ++
T Consensus 367 ~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~Se~ 446 (872)
T KOG4814|consen 367 MEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAEDKSEE 446 (872)
T ss_pred HHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcchHH
Confidence 47999999999998863 235667889999999999999999999997664 66555554444443 88
Q ss_pred HHHHHHHHH
Q 019734 184 AVKLLYQAS 192 (336)
Q Consensus 184 A~~~~~ka~ 192 (336)
|+.+..+..
T Consensus 447 AL~~~~~~~ 455 (872)
T KOG4814|consen 447 ALTCLQKIK 455 (872)
T ss_pred HHHHHHHHH
Confidence 888877664
No 302
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.28 E-value=24 Score=28.90 Aligned_cols=109 Identities=15% Similarity=0.116 Sum_probs=49.9
Q ss_pred cCCCHHHHHHHHHHHHHcCC----HHHHHHHHHHHHH----HHHHHHHHHHHHcC-CHHHHHHHH-----HHHhcCCCCc
Q 019734 149 EMDKKEAAISLYRQAAVLGD----PAGQFNLGISYLQ----EEAVKLLYQASIAG-HVRAQYQLA-----LCLHRGRGVD 214 (336)
Q Consensus 149 ~~~~~~~A~~~~~~a~~~~~----~~a~~~Lg~~~~~----~~A~~~~~ka~~~~-~~~a~~~lg-----~~~~~g~g~~ 214 (336)
..+..++|+.-|....+.|. .-+.+..|.+..+ ..|+.+|..+.... .|.....++ .++.. .
T Consensus 70 ~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD----~ 145 (221)
T COG4649 70 QENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVD----N 145 (221)
T ss_pred HcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhc----c
Confidence 44556666666655554421 2344555555555 66666666554432 222222222 22222 3
Q ss_pred cCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH
Q 019734 215 FNLQEAARWYLRAAEGGYV---RAMYNTSLCYSFGEGLPLSHRQARKWMKRAAD 265 (336)
Q Consensus 215 ~~~~~A~~~~~~a~~~~~~---~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~ 265 (336)
+-|+.-..-.+-....+++ .+.-.||..-.+ .+++.+|..||...+.
T Consensus 146 gsy~dV~srvepLa~d~n~mR~sArEALglAa~k----agd~a~A~~~F~qia~ 195 (221)
T COG4649 146 GSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYK----AGDFAKAKSWFVQIAN 195 (221)
T ss_pred ccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHh----ccchHHHHHHHHHHHc
Confidence 4444444433333322322 233344544433 2266666666666654
No 303
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.22 E-value=45 Score=32.11 Aligned_cols=184 Identities=16% Similarity=0.078 Sum_probs=107.7
Q ss_pred cCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC-HHHH--HHHHHHHHH---------
Q 019734 118 RKNLDKALDSFLKGAAR----GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGD-PAGQ--FNLGISYLQ--------- 181 (336)
Q Consensus 118 ~~~~~~A~~~~~~A~~~----~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~-~~a~--~~Lg~~~~~--------- 181 (336)
.++.+.|+..++.++.. -+.--.+.+|.++....++..|...+....+..+ ..+. |..|-|++.
T Consensus 280 ~g~~eaa~~~~~~~v~~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L~desdWS~a~Y~Yfa~cc~l~~~~~~q~~~ 359 (546)
T KOG3783|consen 280 KGNSEAAIDMESLSIPIRMKQVKSLMVFERAWLSVGQHQYSRAADSFDLLRDESDWSHAFYTYFAGCCLLQNWEVNQGAG 359 (546)
T ss_pred cccHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhhHHHHHHHHHHHHhccHHHHHhcc
Confidence 35689999999988872 1344566778888777888888888888776643 3333 445556654
Q ss_pred ---HHHHHHHHHHHH------------------------cC-----CHHH--HHHHHHHHhcCC-CCccC-HHHHHHHHH
Q 019734 182 ---EEAVKLLYQASI------------------------AG-----HVRA--QYQLALCLHRGR-GVDFN-LQEAARWYL 225 (336)
Q Consensus 182 ---~~A~~~~~ka~~------------------------~~-----~~~a--~~~lg~~~~~g~-g~~~~-~~~A~~~~~ 225 (336)
++|-.+++...+ .+ .+.+ ++.+..++. |. +..++ ..+...-++
T Consensus 360 ~ne~~a~~~~k~~~~l~~~a~K~~P~E~f~~RKverf~~~~~~~~~~~la~P~~El~Y~Wn-gf~~~s~~~l~k~~~~~~ 438 (546)
T KOG3783|consen 360 GNEEKAQLYFKVGEELLANAGKNLPLEKFIVRKVERFVKRGPLNASILLASPYYELAYFWN-GFSRMSKNELEKMRAELE 438 (546)
T ss_pred cchhHHHHHHHHHHHHHHhccccCchhHHHHHHHHHHhccccccccccccchHHHHHHHHh-hcccCChhhHHHHHHHHh
Confidence 222222222211 01 1111 244444432 22 11222 221222121
Q ss_pred -HHHH-CCC-HHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc---------CCHHHHHHHHHHhhccCC-HHHHHHHH
Q 019734 226 -RAAE-GGY-VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC---------GHGKAQLEHGLGLFTEGE-MMKAVVYL 292 (336)
Q Consensus 226 -~a~~-~~~-~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~---------~~~~a~~~lg~~~~~~~~-~~~A~~~~ 292 (336)
...+ .++ .--.+-+|.++.+ .| +...|..+|...++. -.|.++|-||.+|++.+. ..++..|+
T Consensus 439 ~~~~~d~Dd~~lk~lL~g~~lR~-Lg---~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L 514 (546)
T KOG3783|consen 439 NPKIDDSDDEGLKYLLKGVILRN-LG---DSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALL 514 (546)
T ss_pred ccCCCCchHHHHHHHHHHHHHHH-cC---CHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHH
Confidence 1121 111 2224566777744 33 999999999999852 237889999999999888 99999999
Q ss_pred HHHHHcC-cHHHHHH
Q 019734 293 ELATRAG-ETAADHV 306 (336)
Q Consensus 293 ~~A~~~~-~~~a~~~ 306 (336)
.+|-+.. +-+-+..
T Consensus 515 ~kAr~~~~dY~lenR 529 (546)
T KOG3783|consen 515 LKAREYASDYELENR 529 (546)
T ss_pred HHHHhhccccchhhH
Confidence 9999865 3343333
No 304
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=83.07 E-value=39 Score=33.74 Aligned_cols=41 Identities=7% Similarity=-0.109 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 019734 121 LDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAA 164 (336)
Q Consensus 121 ~~~A~~~~~~A~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~ 164 (336)
+++|+.+.+. .-|+.-|..|+..-...-+++.|.+.|-+..
T Consensus 679 ledA~qfiEd---nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~ 719 (1189)
T KOG2041|consen 679 LEDAIQFIED---NPHPRLWRLLAEYALFKLALDTAEHAFVRCG 719 (1189)
T ss_pred hHHHHHHHhc---CCchHHHHHHHHHHHHHHhhhhHhhhhhhhc
Confidence 3444444432 2588889889888887778888888877654
No 305
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=82.90 E-value=39 Score=31.15 Aligned_cols=155 Identities=10% Similarity=-0.017 Sum_probs=90.8
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHH---H-----HHcC--------CHHH
Q 019734 136 STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAGQFNLGISYLQEEAVKLLYQ---A-----SIAG--------HVRA 199 (336)
Q Consensus 136 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~~~A~~~~~k---a-----~~~~--------~~~a 199 (336)
|.+++.+++.++...||.+.|.+++++|+-. ++.++.. .|.. . .... .-.+
T Consensus 39 HidtLlqls~v~~~~gd~~~A~~lleRALf~--------~e~~~~~-----~F~~~~~~~~~g~~rL~~~~~eNR~ffla 105 (360)
T PF04910_consen 39 HIDTLLQLSEVYRQQGDHAQANDLLERALFA--------FERAFHP-----SFSPFRSNLTSGNCRLDYRRPENRQFFLA 105 (360)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------HHHHHHH-----HhhhhhcccccCccccCCccccchHHHHH
Confidence 7788999999999999999999999998732 1111111 1100 0 0000 0112
Q ss_pred HHHHHHHHhcCCCCccCHHHHHHHHHHHHH--CC-CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH--c-----CCH
Q 019734 200 QYQLALCLHRGRGVDFNLQEAARWYLRAAE--GG-YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAAD--C-----GHG 269 (336)
Q Consensus 200 ~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~--~~-~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~--~-----~~~ 269 (336)
.+.....+.+ .|-+..|.+|.+-... +. |+-+....-..|.-.. +.++--+.+++.... . ..|
T Consensus 106 l~r~i~~L~~----RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs---~~y~~Li~~~~~~~~~~~~~~~~~lP 178 (360)
T PF04910_consen 106 LFRYIQSLGR----RGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRS---RQYQWLIDFSESPLAKCYRNWLSLLP 178 (360)
T ss_pred HHHHHHHHHh----cCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhc---CCHHHHHHHHHhHhhhhhhhhhhhCc
Confidence 2222233333 5667777777777644 33 6666655555554322 245444444444333 1 123
Q ss_pred HHHHHHHHHhhccCCH---------------HHHHHHHHHHHHcCcHHHHHHHHHH
Q 019734 270 KAQLEHGLGLFTEGEM---------------MKAVVYLELATRAGETAADHVKNVI 310 (336)
Q Consensus 270 ~a~~~lg~~~~~~~~~---------------~~A~~~~~~A~~~~~~~a~~~~~~~ 310 (336)
...+.++.+++..++. ++|...+++|+..-+.-....+..+
T Consensus 179 n~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~vl~~Ll~~l 234 (360)
T PF04910_consen 179 NFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWVLVPLLDKL 234 (360)
T ss_pred cHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHHHHHHHHHHh
Confidence 4556777777777766 8999999999887766666665555
No 306
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=82.58 E-value=7.2 Score=37.78 Aligned_cols=77 Identities=19% Similarity=0.208 Sum_probs=47.7
Q ss_pred cCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHH----HHHHHHH
Q 019734 118 RKNLDKALDSFLKGAARG---STLAMVDAGLMYWEMDKKEAAISLYRQAAVLG--DPAGQFNLGISYLQ----EEAVKLL 188 (336)
Q Consensus 118 ~~~~~~A~~~~~~A~~~~---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~~~~----~~A~~~~ 188 (336)
.|+...|+.++..|.... ......+|+.++...+-.-.|-.++.+++... .|-.++-+|++|+. +.|++.|
T Consensus 620 ~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~ 699 (886)
T KOG4507|consen 620 VGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAF 699 (886)
T ss_pred cCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHH
Confidence 567777777777766542 22345566666666666666666766666553 34455666666665 6677777
Q ss_pred HHHHHc
Q 019734 189 YQASIA 194 (336)
Q Consensus 189 ~ka~~~ 194 (336)
++|++.
T Consensus 700 ~~a~~~ 705 (886)
T KOG4507|consen 700 RQALKL 705 (886)
T ss_pred HHHHhc
Confidence 776654
No 307
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.51 E-value=46 Score=31.74 Aligned_cols=109 Identities=17% Similarity=0.058 Sum_probs=73.8
Q ss_pred cCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHc----CC-----HHHHHHHHHHHHH-
Q 019734 118 RKNLDKALDSFLKGAARG-----STLAMVDAGLMYWE-MDKKEAAISLYRQAAVL----GD-----PAGQFNLGISYLQ- 181 (336)
Q Consensus 118 ~~~~~~A~~~~~~A~~~~-----~~~a~~~lg~~~~~-~~~~~~A~~~~~~a~~~----~~-----~~a~~~Lg~~~~~- 181 (336)
+.++.+++++++...... .+....+||.+++. ..+++.|...+++|... +. .++...|+.+|..
T Consensus 22 PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~ 101 (629)
T KOG2300|consen 22 PPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQL 101 (629)
T ss_pred ChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHh
Confidence 557888888888666542 23455677776644 58888899888888633 11 2455567777766
Q ss_pred ----HHHHHHHHHHHHc--CC----HHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHC
Q 019734 182 ----EEAVKLLYQASIA--GH----VRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG 230 (336)
Q Consensus 182 ----~~A~~~~~ka~~~--~~----~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~ 230 (336)
..+...+.+|++. +. ..-.+.|+.++.. .+|+.-|.+.+...++.
T Consensus 102 ~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~i----dkD~~sA~elLavga~s 156 (629)
T KOG2300|consen 102 AQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHII----DKDFPSALELLAVGAES 156 (629)
T ss_pred cCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhh----hccchhHHHHHhccccc
Confidence 6777888888775 33 3456778888776 78888888886654433
No 308
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=81.08 E-value=70 Score=32.84 Aligned_cols=173 Identities=18% Similarity=0.112 Sum_probs=106.5
Q ss_pred CCHHHHHHHHHHHHHc-C-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHH----HHHHHHHHH
Q 019734 119 KNLDKALDSFLKGAAR-G-STLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQ----EEAVKLLYQ 190 (336)
Q Consensus 119 ~~~~~A~~~~~~A~~~-~-~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~----~~A~~~~~k 190 (336)
+++.+|..-..+..+. . ...+...-|..+.+.|+.++|..+++-.... .|...+-.|-.+|.+ ++|+.+|++
T Consensus 23 ~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~ 102 (932)
T KOG2053|consen 23 SQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYER 102 (932)
T ss_pred HHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 6888999888888776 3 4555666688899999999999666654333 567777888888887 999999999
Q ss_pred HHHcC-CHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcC-CCCc-----ccHHHHHHHHHHH
Q 019734 191 ASIAG-HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFG-EGLP-----LSHRQARKWMKRA 263 (336)
Q Consensus 191 a~~~~-~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~-~g~~-----~~~~~A~~~~~~a 263 (336)
++... .-+-.+.+=.+|.+-....+.-..|++.|+- -+..+-..+..-.++... .+.+ .-..-|....++-
T Consensus 103 ~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~--~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~ 180 (932)
T KOG2053|consen 103 ANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKN--FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKL 180 (932)
T ss_pred HHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHH
Confidence 98763 3455555666666521112334456666663 233333333333444333 1111 1233455555555
Q ss_pred HHcC-CH----HHHHHHHHHhhccCCHHHHHHHHHH
Q 019734 264 ADCG-HG----KAQLEHGLGLFTEGEMMKAVVYLEL 294 (336)
Q Consensus 264 ~~~~-~~----~a~~~lg~~~~~~~~~~~A~~~~~~ 294 (336)
++.+ .. +....+ .+...+|++++|..++..
T Consensus 181 l~~~gk~~s~aE~~Lyl-~iL~~~~k~~eal~~l~~ 215 (932)
T KOG2053|consen 181 LEKKGKIESEAEIILYL-LILELQGKYQEALEFLAI 215 (932)
T ss_pred hccCCccchHHHHHHHH-HHHHhcccHHHHHHHHHH
Confidence 5543 32 222222 335568899999999844
No 309
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=81.04 E-value=4.2 Score=38.21 Aligned_cols=105 Identities=12% Similarity=0.034 Sum_probs=74.5
Q ss_pred HHHHHHhcCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcC--CHHHHHHHHH
Q 019734 68 VLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGL 145 (336)
Q Consensus 68 ~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~ 145 (336)
.-.++...+....+..|+.+|-+.++..++ .+...-+.+..+.. ..++..|+.-+.+|++.. ...+++.-|.
T Consensus 7 ~k~ean~~l~~~~fd~avdlysKaI~ldpn--ca~~~anRa~a~lK----~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~ 80 (476)
T KOG0376|consen 7 LKNEANEALKDKVFDVAVDLYSKAIELDPN--CAIYFANRALAHLK----VESFGGALHDALKAIELDPTYIKAYVRRGT 80 (476)
T ss_pred hhhHHhhhcccchHHHHHHHHHHHHhcCCc--ceeeechhhhhhee----echhhhHHHHHHhhhhcCchhhheeeeccH
Confidence 345667778889999999999999988775 33333334444444 568888998899998875 4566677777
Q ss_pred HHhcCCCHHHHHHHHHHHHH--cCCHHHHHHHHHH
Q 019734 146 MYWEMDKKEAAISLYRQAAV--LGDPAGQFNLGIS 178 (336)
Q Consensus 146 ~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~Lg~~ 178 (336)
.+..++.+.+|+.-|++... ++++.+...+-.|
T Consensus 81 a~m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 81 AVMALGEFKKALLDLEKVKKLAPNDPDATRKIDEC 115 (476)
T ss_pred HHHhHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHH
Confidence 77778888888888887654 4666665544433
No 310
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.76 E-value=6.5 Score=38.40 Aligned_cols=81 Identities=10% Similarity=0.014 Sum_probs=53.6
Q ss_pred cccHHHHHHHHHHHHHc--------CCHHHHHHHHHHhhccCCHHHHHHHHHHHHHcCcHHHHHHHHHHHhhcChhcHHH
Q 019734 250 PLSHRQARKWMKRAADC--------GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSRDR 321 (336)
Q Consensus 250 ~~~~~~A~~~~~~a~~~--------~~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~~~~a~~~~~~~~~~~~~~~~~~ 321 (336)
.++|..+++||..++.- .....+.+|..||....+.++|.+++++|-+.++-.....+-.+..-+..+.-.+
T Consensus 367 ~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~Se~ 446 (872)
T KOG4814|consen 367 MEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAEDKSEE 446 (872)
T ss_pred HHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcchHH
Confidence 45899999999998762 2245568889999999999999999999988774333333333333333444455
Q ss_pred HHHHHHHhh
Q 019734 322 AMLVVDSWR 330 (336)
Q Consensus 322 a~~~~~~~~ 330 (336)
|..++....
T Consensus 447 AL~~~~~~~ 455 (872)
T KOG4814|consen 447 ALTCLQKIK 455 (872)
T ss_pred HHHHHHHHH
Confidence 555444443
No 311
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=79.04 E-value=3.8 Score=28.38 Aligned_cols=30 Identities=20% Similarity=0.226 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 019734 123 KALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAV 165 (336)
Q Consensus 123 ~A~~~~~~A~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~ 165 (336)
.|+.+.++|++.+ ..|++++|+.+|..+++
T Consensus 5 ~Ai~~a~~Ave~D-------------~~g~y~eA~~~Y~~aie 34 (76)
T cd02681 5 DAVQFARLAVQRD-------------QEGRYSEAVFYYKEAAQ 34 (76)
T ss_pred HHHHHHHHHHHHH-------------HccCHHHHHHHHHHHHH
Confidence 5566666665543 56788888888877764
No 312
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=78.33 E-value=77 Score=32.54 Aligned_cols=46 Identities=17% Similarity=0.089 Sum_probs=22.7
Q ss_pred CCHHHHHHHHHHHHHc-------CCHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 019734 119 KNLDKALDSFLKGAAR-------GSTLAMVDAGLMYWEMDKKEAAISLYRQAA 164 (336)
Q Consensus 119 ~~~~~A~~~~~~A~~~-------~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~ 164 (336)
+|+++|+++-+.+... ....+...+|.+..-.|++++|..+.+++-
T Consensus 472 ~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~ 524 (894)
T COG2909 472 GDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAE 524 (894)
T ss_pred CCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHH
Confidence 4555555555555443 012344445555555555555555555443
No 313
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=78.06 E-value=2.2 Score=38.30 Aligned_cols=97 Identities=14% Similarity=-0.011 Sum_probs=68.2
Q ss_pred ccCHHHHHHHHHHHHHCCCH--HHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCC--HHHHHHHHHHhhccCCHHHHH
Q 019734 214 DFNLQEAARWYLRAAEGGYV--RAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGH--GKAQLEHGLGLFTEGEMMKAV 289 (336)
Q Consensus 214 ~~~~~~A~~~~~~a~~~~~~--~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~~~--~~a~~~lg~~~~~~~~~~~A~ 289 (336)
.+++++|++.|.+++....+ .-+..-+.++.+. +....|+.-+..|++.+. ...+-.-|.....+|++++|.
T Consensus 127 ~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl----~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa 202 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELNPPLAILYAKRASVFLKL----KKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAA 202 (377)
T ss_pred CcchhhhhcccccccccCCchhhhcccccceeeec----cCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHH
Confidence 46688999999998776544 4444556666543 377788888888888643 444566677788889999999
Q ss_pred HHHHHHHHcCcH-HHHHHHHHHHhhc
Q 019734 290 VYLELATRAGET-AADHVKNVILQQL 314 (336)
Q Consensus 290 ~~~~~A~~~~~~-~a~~~~~~~~~~~ 314 (336)
+.++.++.++.. .....+..+....
T Consensus 203 ~dl~~a~kld~dE~~~a~lKeV~p~a 228 (377)
T KOG1308|consen 203 HDLALACKLDYDEANSATLKEVFPNA 228 (377)
T ss_pred HHHHHHHhccccHHHHHHHHHhccch
Confidence 999999998743 4445555544433
No 314
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=76.93 E-value=4.4 Score=27.24 Aligned_cols=19 Identities=32% Similarity=0.338 Sum_probs=13.2
Q ss_pred HhcCCCHHHHHHHHHHHHH
Q 019734 147 YWEMDKKEAAISLYRQAAV 165 (336)
Q Consensus 147 ~~~~~~~~~A~~~~~~a~~ 165 (336)
.-+.|++++|+.+|.++++
T Consensus 15 ~D~~g~~~~A~~~Y~~ai~ 33 (69)
T PF04212_consen 15 ADEAGNYEEALELYKEAIE 33 (69)
T ss_dssp HHHTTSHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 3356778888888777764
No 315
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=76.58 E-value=23 Score=25.34 Aligned_cols=39 Identities=15% Similarity=0.082 Sum_probs=23.3
Q ss_pred HHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc
Q 019734 90 SWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR 134 (336)
Q Consensus 90 ~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~ 134 (336)
..++..|+ +.++.+.|+..+.. .+++++|+..+-..+..
T Consensus 13 ~~~a~~P~--D~~ar~~lA~~~~~----~g~~e~Al~~Ll~~v~~ 51 (90)
T PF14561_consen 13 AALAANPD--DLDARYALADALLA----AGDYEEALDQLLELVRR 51 (90)
T ss_dssp HHHHHSTT---HHHHHHHHHHHHH----TT-HHHHHHHHHHHHCC
T ss_pred HHHHcCCC--CHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHh
Confidence 33444443 66777777777776 36777777777766654
No 316
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=76.47 E-value=7.2 Score=33.25 Aligned_cols=49 Identities=12% Similarity=0.079 Sum_probs=34.1
Q ss_pred cCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 019734 118 RKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL 166 (336)
Q Consensus 118 ~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~ 166 (336)
.+|.+.|.+.|.+|+.+ .+...|+.+|......|+++.|...|.+.++.
T Consensus 8 ~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~l 58 (287)
T COG4976 8 SGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLEL 58 (287)
T ss_pred cCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcC
Confidence 45677777777777766 46667777777777777777777777776654
No 317
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=76.46 E-value=6 Score=27.61 Aligned_cols=32 Identities=25% Similarity=0.318 Sum_probs=18.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 019734 120 NLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAA 164 (336)
Q Consensus 120 ~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~ 164 (336)
.+++|+.+..+|+.. .+.|+.++|+.+|++++
T Consensus 4 ~~~~A~~~I~kaL~~-------------dE~g~~e~Al~~Y~~gi 35 (79)
T cd02679 4 YYKQAFEEISKALRA-------------DEWGDKEQALAHYRKGL 35 (79)
T ss_pred HHHHHHHHHHHHhhh-------------hhcCCHHHHHHHHHHHH
Confidence 345555555555443 24466777777776665
No 318
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=76.45 E-value=4.9 Score=23.63 Aligned_cols=29 Identities=14% Similarity=-0.062 Sum_probs=24.5
Q ss_pred HHHHHHHHHhhccCCHHHHHHHHHHHHHc
Q 019734 270 KAQLEHGLGLFTEGEMMKAVVYLELATRA 298 (336)
Q Consensus 270 ~a~~~lg~~~~~~~~~~~A~~~~~~A~~~ 298 (336)
+.+..||.+-.+.++|++|+.-|+++++.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 35678899999999999999999998864
No 319
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=75.92 E-value=8.5 Score=22.28 Aligned_cols=27 Identities=15% Similarity=0.241 Sum_probs=19.1
Q ss_pred HHHHHHHHHHhcCCCHHHHHHH--HHHHH
Q 019734 138 LAMVDAGLMYWEMDKKEAAISL--YRQAA 164 (336)
Q Consensus 138 ~a~~~lg~~~~~~~~~~~A~~~--~~~a~ 164 (336)
+.++.+|..+...|++++|++. |+-+.
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~ 30 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLC 30 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 4567788888888888888888 43543
No 320
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=75.86 E-value=10 Score=27.15 Aligned_cols=42 Identities=10% Similarity=-0.063 Sum_probs=33.0
Q ss_pred HHHHHHHHHc--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 019734 125 LDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL 166 (336)
Q Consensus 125 ~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~ 166 (336)
+.-+++++.. ++.++.+.++..+...|++++|+..+...+..
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~ 51 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRR 51 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 4446666654 68899999999999999999999999998865
No 321
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=75.70 E-value=1e+02 Score=31.74 Aligned_cols=174 Identities=18% Similarity=0.028 Sum_probs=95.1
Q ss_pred CCHHHHHHHHHHHHHc---------CC--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC-------CHHHHHHHHHHHH
Q 019734 119 KNLDKALDSFLKGAAR---------GS--TLAMVDAGLMYWEMDKKEAAISLYRQAAVLG-------DPAGQFNLGISYL 180 (336)
Q Consensus 119 ~~~~~A~~~~~~A~~~---------~~--~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~-------~~~a~~~Lg~~~~ 180 (336)
..+.+|.....++... +. ++..---|.+....+++++|+.+.+.+++.= ...+...+|.+..
T Consensus 429 ~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~ 508 (894)
T COG2909 429 HRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAH 508 (894)
T ss_pred cChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHH
Confidence 3566666666555431 22 2444456778888999999999999998652 2334455665554
Q ss_pred H----HHHHHHHHHHHHc----CC----HHHHHHHHHHHhc-CCCCccCHHHHHHHHHHH----HHCCC-----HHHHHH
Q 019734 181 Q----EEAVKLLYQASIA----GH----VRAQYQLALCLHR-GRGVDFNLQEAARWYLRA----AEGGY-----VRAMYN 238 (336)
Q Consensus 181 ~----~~A~~~~~ka~~~----~~----~~a~~~lg~~~~~-g~g~~~~~~~A~~~~~~a----~~~~~-----~~a~~~ 238 (336)
- .+|..+.+.+.+. +. .-+.+.-+.++.. | .--+.+...-|... ..... ......
T Consensus 509 ~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qG---q~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 509 IRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQG---QVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 4 7777777776543 21 1122333444443 2 11222222222222 11111 123334
Q ss_pred HHHHHHcCCCCcccHHHHHHHHHHHHHcCC--HH---HHHHHHHHhhccCCHHHHHHHHHHHHHc
Q 019734 239 TSLCYSFGEGLPLSHRQARKWMKRAADCGH--GK---AQLEHGLGLFTEGEMMKAVVYLELATRA 298 (336)
Q Consensus 239 lg~~~~~~~g~~~~~~~A~~~~~~a~~~~~--~~---a~~~lg~~~~~~~~~~~A~~~~~~A~~~ 298 (336)
+..+|.+- .....++..++........ -. +.+.|+.+++..||.++|..........
T Consensus 586 ll~~~~r~---~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l 647 (894)
T COG2909 586 LLRAWLRL---DLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERL 647 (894)
T ss_pred HHHHHHHH---hhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 44444432 2255566666655544321 11 1247888999999999999998887653
No 322
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.15 E-value=1.2e+02 Score=32.14 Aligned_cols=43 Identities=16% Similarity=0.085 Sum_probs=32.4
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 019734 119 KNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAA 164 (336)
Q Consensus 119 ~~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~ 164 (336)
+++++|.++-+++ +.+..|.++|.....++...+|++.|-+|-
T Consensus 1089 ~~ldRA~efAe~~---n~p~vWsqlakAQL~~~~v~dAieSyikad 1131 (1666)
T KOG0985|consen 1089 GSLDRAYEFAERC---NEPAVWSQLAKAQLQGGLVKDAIESYIKAD 1131 (1666)
T ss_pred hhHHHHHHHHHhh---CChHHHHHHHHHHHhcCchHHHHHHHHhcC
Confidence 5777777766654 678888888888888888888888776654
No 323
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=74.92 E-value=34 Score=26.71 Aligned_cols=72 Identities=0% Similarity=-0.060 Sum_probs=55.7
Q ss_pred CHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHH
Q 019734 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG----STLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQ 172 (336)
Q Consensus 100 ~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~~----~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~ 172 (336)
.....++++-++..- ....|..+.+..++...+.. .-+-.|.|+.-+++.+++++++.+.+..++. ++.++.
T Consensus 31 s~~s~f~lAwaLV~S-~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~ 108 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRS-RDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQAL 108 (149)
T ss_pred hHHHHHHHHHHHHcc-cchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 556677777776652 33568899999999988743 3467789999999999999999999998865 566664
No 324
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=74.67 E-value=58 Score=28.45 Aligned_cols=40 Identities=28% Similarity=0.209 Sum_probs=24.7
Q ss_pred HHHHHHHHHH--HHcCCHHHHHHHHHHHhcCCCCccCHHHHHHHHHH
Q 019734 182 EEAVKLLYQA--SIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLR 226 (336)
Q Consensus 182 ~~A~~~~~ka--~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~ 226 (336)
..|+.|- +. -..|+++-+..+|..|.. .+++.+|..+|-.
T Consensus 74 ~~ai~WS-~~~~~~~Gdp~LH~~~a~~~~~----e~~~~~A~~Hfl~ 115 (260)
T PF04190_consen 74 KAAIKWS-KFGSYKFGDPELHHLLAEKLWK----EGNYYEAERHFLL 115 (260)
T ss_dssp HHHHHHH-HTSS-TT--HHHHHHHHHHHHH----TT-HHHHHHHHHT
T ss_pred HHHHHHH-ccCCCCCCCHHHHHHHHHHHHh----hccHHHHHHHHHh
Confidence 5666666 22 223778888888888877 6777777777654
No 325
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=74.42 E-value=63 Score=29.22 Aligned_cols=95 Identities=15% Similarity=0.022 Sum_probs=66.2
Q ss_pred CHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHH----CC----CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcC
Q 019734 196 HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAE----GG----YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCG 267 (336)
Q Consensus 196 ~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~----~~----~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~~ 267 (336)
..+|+.+.|..|-+ .+|-+.|.+++++.-+ .| -.-....+|..|....-+.+..++|...+++. |
T Consensus 103 v~ea~~~kaeYycq----igDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~G---g 175 (393)
T KOG0687|consen 103 VREAMLRKAEYYCQ----IGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEG---G 175 (393)
T ss_pred HHHHHHHHHHHHHH----hccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhC---C
Confidence 35788999999888 8899999998877543 23 34566788888875554566677777766654 4
Q ss_pred CHHHHHH----HHHHhhccCCHHHHHHHHHHHHH
Q 019734 268 HGKAQLE----HGLGLFTEGEMMKAVVYLELATR 297 (336)
Q Consensus 268 ~~~a~~~----lg~~~~~~~~~~~A~~~~~~A~~ 297 (336)
+++-.+. -|.......++.+|...|-..+.
T Consensus 176 DWeRrNRlKvY~Gly~msvR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 176 DWERRNRLKVYQGLYCMSVRNFKEAADLFLDSVS 209 (393)
T ss_pred ChhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHcc
Confidence 5444332 34545557888898888888775
No 326
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=73.39 E-value=6.8 Score=27.17 Aligned_cols=32 Identities=9% Similarity=0.078 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 019734 121 LDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAV 165 (336)
Q Consensus 121 ~~~A~~~~~~A~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~ 165 (336)
...|+.+..+|+..+ ..|++++|+.+|.++++
T Consensus 3 ~~~a~~l~~~Ave~D-------------~~g~y~eAl~~Y~~aie 34 (77)
T cd02683 3 ELAAKEVLKRAVELD-------------QEGRFQEALVCYQEGID 34 (77)
T ss_pred hHHHHHHHHHHHHHH-------------HhccHHHHHHHHHHHHH
Confidence 345666666665443 45777777777777664
No 327
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=72.15 E-value=65 Score=29.05 Aligned_cols=86 Identities=20% Similarity=0.262 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--C--------CHHHHHHHHHHHhcCCCHHHHHHHHHHHH----Hc
Q 019734 101 AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--G--------STLAMVDAGLMYWEMDKKEAAISLYRQAA----VL 166 (336)
Q Consensus 101 ~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~--------~~~a~~~lg~~~~~~~~~~~A~~~~~~a~----~~ 166 (336)
+.....|+.+|.. ++++..|...+. ++.. | -..-+..+|.+|...+|..+|..+..++. +.
T Consensus 103 ~~irl~LAsiYE~----Eq~~~~aaq~L~-~I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~ 177 (399)
T KOG1497|consen 103 ASIRLHLASIYEK----EQNWRDAAQVLV-GIPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAES 177 (399)
T ss_pred HHHHHHHHHHHHH----hhhHHHHHHHHh-ccCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcc
Confidence 4466778999988 688888877665 2322 1 12456789999999999999999999974 44
Q ss_pred CCHHHHHHHHHHHHH---------HHHHHHHHHH
Q 019734 167 GDPAGQFNLGISYLQ---------EEAVKLLYQA 191 (336)
Q Consensus 167 ~~~~a~~~Lg~~~~~---------~~A~~~~~ka 191 (336)
.++.....+-.||.. +-|..||+-.
T Consensus 178 ~Ne~Lqie~kvc~ARvlD~krkFlEAAqrYyels 211 (399)
T KOG1497|consen 178 SNEQLQIEYKVCYARVLDYKRKFLEAAQRYYELS 211 (399)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677766666666655 5555555433
No 328
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.95 E-value=1.4e+02 Score=31.62 Aligned_cols=59 Identities=17% Similarity=0.142 Sum_probs=35.8
Q ss_pred CHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 019734 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAV 165 (336)
Q Consensus 100 ~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~ 165 (336)
.+..|-.||.+-.+| +...+|++-|-+| ++|..+.+.-.+....|.+++-+.++..|-+
T Consensus 1103 ~p~vWsqlakAQL~~----~~v~dAieSyika---dDps~y~eVi~~a~~~~~~edLv~yL~MaRk 1161 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQG----GLVKDAIESYIKA---DDPSNYLEVIDVASRTGKYEDLVKYLLMARK 1161 (1666)
T ss_pred ChHHHHHHHHHHHhc----CchHHHHHHHHhc---CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 455566666666664 5556666666554 5666666666666666666666666665543
No 329
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=71.94 E-value=6.8 Score=37.93 Aligned_cols=81 Identities=12% Similarity=-0.032 Sum_probs=44.2
Q ss_pred cHHHHHHHHHHHHHcCCH---HHHHHHHHHhhccCCHHHHHHHHHHHHHcCcHHHHHHHHHHHhhcChhcHHHHHHHHHH
Q 019734 252 SHRQARKWMKRAADCGHG---KAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSRDRAMLVVDS 328 (336)
Q Consensus 252 ~~~~A~~~~~~a~~~~~~---~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~ 328 (336)
+...|..++.+|....+. ....+|+.+...-|-..+|-.++.+++.....+....+.....++.-.+.+.|.+.++.
T Consensus 622 n~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~ 701 (886)
T KOG4507|consen 622 NSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQ 701 (886)
T ss_pred CcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHH
Confidence 666677776666653222 22355666555555566666666666655554444444444444444555556555555
Q ss_pred hhcC
Q 019734 329 WRAM 332 (336)
Q Consensus 329 ~~~~ 332 (336)
..++
T Consensus 702 a~~~ 705 (886)
T KOG4507|consen 702 ALKL 705 (886)
T ss_pred HHhc
Confidence 4443
No 330
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=71.88 E-value=23 Score=32.03 Aligned_cols=75 Identities=15% Similarity=0.153 Sum_probs=49.2
Q ss_pred cCCHHHHHHHHHHHHHc--C----CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHH----HHHH
Q 019734 118 RKNLDKALDSFLKGAAR--G----STLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQ----EEAV 185 (336)
Q Consensus 118 ~~~~~~A~~~~~~A~~~--~----~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~----~~A~ 185 (336)
.+++..|+..|.+.++. + ++.-+.+.+-+.+..|++..|+.-..+|+.. .+..+++.=+.|++. ..|+
T Consensus 94 ~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe~~~~a~ 173 (390)
T KOG0551|consen 94 EKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLELERFAEAV 173 (390)
T ss_pred hhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHHHHHHHHH
Confidence 46777777777777765 2 2334556677777777777777777777644 566677666666666 5666
Q ss_pred HHHHHHH
Q 019734 186 KLLYQAS 192 (336)
Q Consensus 186 ~~~~ka~ 192 (336)
.|.+..+
T Consensus 174 nw~ee~~ 180 (390)
T KOG0551|consen 174 NWCEEGL 180 (390)
T ss_pred HHHhhhh
Confidence 6666553
No 331
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=71.02 E-value=8.5 Score=26.54 Aligned_cols=19 Identities=26% Similarity=0.232 Sum_probs=13.9
Q ss_pred HhcCCCHHHHHHHHHHHHH
Q 019734 147 YWEMDKKEAAISLYRQAAV 165 (336)
Q Consensus 147 ~~~~~~~~~A~~~~~~a~~ 165 (336)
+-..|++++|+.+|+++++
T Consensus 16 ~D~~gr~~eAi~~Y~~aIe 34 (75)
T cd02682 16 AEKEGNAEDAITNYKKAIE 34 (75)
T ss_pred HHhcCCHHHHHHHHHHHHH
Confidence 3466788888888887764
No 332
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=69.87 E-value=18 Score=37.68 Aligned_cols=84 Identities=20% Similarity=0.162 Sum_probs=61.4
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHH-----------HHHHHHHHHHHH-cCCHHHHHHHHH
Q 019734 143 AGLMYWEMDKKEAAISLYRQAAVL-----GDPAGQFNLGISYLQ-----------EEAVKLLYQASI-AGHVRAQYQLAL 205 (336)
Q Consensus 143 lg~~~~~~~~~~~A~~~~~~a~~~-----~~~~a~~~Lg~~~~~-----------~~A~~~~~ka~~-~~~~~a~~~lg~ 205 (336)
........+.++.|+..|++..+. .--+|+|.+|..+.. .+|+.-|++.-. .+-|--+.--+.
T Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 (932)
T PRK13184 481 VPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGGVGAPLEYLGKAL 560 (932)
T ss_pred CcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCCchHHHhHHH
Confidence 344455567888999999988765 456888999988887 566666666543 245566666777
Q ss_pred HHhcCCCCccCHHHHHHHHHHHHHC
Q 019734 206 CLHRGRGVDFNLQEAARWYLRAAEG 230 (336)
Q Consensus 206 ~~~~g~g~~~~~~~A~~~~~~a~~~ 230 (336)
+|.. .+++++-++.|..|+..
T Consensus 561 ~~~~----~~~~~~~~~~~~~~~~~ 581 (932)
T PRK13184 561 VYQR----LGEYNEEIKSLLLALKR 581 (932)
T ss_pred HHHH----hhhHHHHHHHHHHHHHh
Confidence 7877 78999999999988753
No 333
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=69.76 E-value=17 Score=37.92 Aligned_cols=91 Identities=14% Similarity=0.161 Sum_probs=70.4
Q ss_pred CCChhHHhhhHHHHHHHHHhCC-CCCHHHHHHHHHHHhcCC---CCcCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHhcC
Q 019734 76 FTLPQLRAASLVCKSWNDALRP-LREAMVLLRWGKRFKHGR---GVRKNLDKALDSFLKGAAR-GSTLAMVDAGLMYWEM 150 (336)
Q Consensus 76 ~~~~~~~~a~~~~~~~~~~~~~-~~~~~a~~~lg~~~~~g~---g~~~~~~~A~~~~~~A~~~-~~~~a~~~lg~~~~~~ 150 (336)
+....|++|...|++....-|. ...-+|++.+|....... |.+.++++|+.-|++.-.- +-|--+..-+.+|...
T Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 565 (932)
T PRK13184 486 LAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGGVGAPLEYLGKALVYQRL 565 (932)
T ss_pred HhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCCchHHHhHHHHHHHh
Confidence 3557799999999999888764 345789999999988743 3345688888888876433 4556666777888899
Q ss_pred CCHHHHHHHHHHHHHc
Q 019734 151 DKKEAAISLYRQAAVL 166 (336)
Q Consensus 151 ~~~~~A~~~~~~a~~~ 166 (336)
+++++-++.|.-|+..
T Consensus 566 ~~~~~~~~~~~~~~~~ 581 (932)
T PRK13184 566 GEYNEEIKSLLLALKR 581 (932)
T ss_pred hhHHHHHHHHHHHHHh
Confidence 9999999999999864
No 334
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=69.65 E-value=8.4 Score=22.63 Aligned_cols=27 Identities=26% Similarity=0.151 Sum_probs=16.6
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 019734 139 AMVDAGLMYWEMDKKEAAISLYRQAAV 165 (336)
Q Consensus 139 a~~~lg~~~~~~~~~~~A~~~~~~a~~ 165 (336)
.+..||.+-....++++|+.-|+++++
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~ 29 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALE 29 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 345566666666666666666666653
No 335
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=69.27 E-value=9.7 Score=26.26 Aligned_cols=34 Identities=18% Similarity=0.139 Sum_probs=22.4
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHc
Q 019734 252 SHRQARKWMKRAADCGHGKAQLEHGLGLFTEGEMMKAVVYLELATRA 298 (336)
Q Consensus 252 ~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~ 298 (336)
+.++|+...++|++.+ +.|++++|+.+|..|++.
T Consensus 2 ~l~kai~Lv~~A~~eD-------------~~gny~eA~~lY~~ale~ 35 (75)
T cd02680 2 DLERAHFLVTQAFDED-------------EKGNAEEAIELYTEAVEL 35 (75)
T ss_pred CHHHHHHHHHHHHHhh-------------HhhhHHHHHHHHHHHHHH
Confidence 4556666666665433 357788888888888764
No 336
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=69.06 E-value=35 Score=34.34 Aligned_cols=52 Identities=27% Similarity=0.349 Sum_probs=36.6
Q ss_pred CCCcCCHHHHHHHHHHHHHc-C--CHHHHHHHHHHHhcC---------CCHHHHHHHHHHHHHc
Q 019734 115 RGVRKNLDKALDSFLKGAAR-G--STLAMVDAGLMYWEM---------DKKEAAISLYRQAAVL 166 (336)
Q Consensus 115 ~g~~~~~~~A~~~~~~A~~~-~--~~~a~~~lg~~~~~~---------~~~~~A~~~~~~a~~~ 166 (336)
...+||-++|+...-.+++. | .++.++..|++|... +..+.|++||++|.+.
T Consensus 253 RNr~GDRakAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFev 316 (1226)
T KOG4279|consen 253 RNRPGDRAKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEV 316 (1226)
T ss_pred cCCCccHHHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhcc
Confidence 35578888888888877776 3 456677778877553 4566778888888755
No 337
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=68.63 E-value=13 Score=25.67 Aligned_cols=19 Identities=32% Similarity=0.354 Sum_probs=13.1
Q ss_pred hhccCCHHHHHHHHHHHHH
Q 019734 279 LFTEGEMMKAVVYLELATR 297 (336)
Q Consensus 279 ~~~~~~~~~A~~~~~~A~~ 297 (336)
....|++++|+.+|..|++
T Consensus 16 ~D~~g~y~eA~~~Y~~aie 34 (76)
T cd02681 16 RDQEGRYSEAVFYYKEAAQ 34 (76)
T ss_pred HHHccCHHHHHHHHHHHHH
Confidence 3446777777777777765
No 338
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=68.30 E-value=10 Score=25.98 Aligned_cols=31 Identities=26% Similarity=0.296 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 019734 122 DKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAV 165 (336)
Q Consensus 122 ~~A~~~~~~A~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~ 165 (336)
++|+.++.+|+.. -..|++++|+.+|.++++
T Consensus 4 ~~A~~l~~~Av~~-------------D~~g~y~eA~~~Y~~aie 34 (75)
T cd02678 4 QKAIELVKKAIEE-------------DNAGNYEEALRLYQHALE 34 (75)
T ss_pred HHHHHHHHHHHHH-------------HHcCCHHHHHHHHHHHHH
Confidence 4556666665443 245777777777777764
No 339
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=67.78 E-value=10 Score=26.07 Aligned_cols=32 Identities=28% Similarity=0.403 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 019734 121 LDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAV 165 (336)
Q Consensus 121 ~~~A~~~~~~A~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~ 165 (336)
+.+|+....+|+..+ ..|++++|+.+|.++++
T Consensus 3 l~~Ai~lv~~Av~~D-------------~~g~y~eA~~lY~~ale 34 (75)
T cd02684 3 LEKAIALVVQAVKKD-------------QRGDAAAALSLYCSALQ 34 (75)
T ss_pred HHHHHHHHHHHHHHH-------------HhccHHHHHHHHHHHHH
Confidence 456666666665443 45677777777777664
No 340
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=67.49 E-value=30 Score=23.80 Aligned_cols=15 Identities=13% Similarity=0.264 Sum_probs=10.7
Q ss_pred CCHHHHHHHHHHHHH
Q 019734 283 GEMMKAVVYLELATR 297 (336)
Q Consensus 283 ~~~~~A~~~~~~A~~ 297 (336)
|++++|..+|..|++
T Consensus 20 ~~y~eA~~~Y~~~i~ 34 (75)
T cd02677 20 GDYEAAFEFYRAGVD 34 (75)
T ss_pred hhHHHHHHHHHHHHH
Confidence 677777777777765
No 341
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=67.47 E-value=1.1e+02 Score=28.60 Aligned_cols=242 Identities=16% Similarity=0.044 Sum_probs=134.2
Q ss_pred CChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcCCHHHHH-HHHHHH---hcCCC
Q 019734 77 TLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMV-DAGLMY---WEMDK 152 (336)
Q Consensus 77 ~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~-~lg~~~---~~~~~ 152 (336)
..|+-..|....++.-+.....-.+..+..=+..-.- +||++.|.+-|+.-+ ++|+... .|--+| ...|+
T Consensus 96 gAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~----eG~~~~Ar~kfeAMl--~dPEtRllGLRgLyleAqr~Ga 169 (531)
T COG3898 96 GAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALL----EGDYEDARKKFEAML--DDPETRLLGLRGLYLEAQRLGA 169 (531)
T ss_pred ccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHh----cCchHHHHHHHHHHh--cChHHHHHhHHHHHHHHHhccc
Confidence 4466666654444444333332233333333333332 679999998888654 4555422 222222 33589
Q ss_pred HHHHHHHHHHHHHcC--CHHHH-HHHHHHHHH---HHHHHHHHHHHHc-----C---CHHHHHHHHHHHhcCCCCccCHH
Q 019734 153 KEAAISLYRQAAVLG--DPAGQ-FNLGISYLQ---EEAVKLLYQASIA-----G---HVRAQYQLALCLHRGRGVDFNLQ 218 (336)
Q Consensus 153 ~~~A~~~~~~a~~~~--~~~a~-~~Lg~~~~~---~~A~~~~~ka~~~-----~---~~~a~~~lg~~~~~g~g~~~~~~ 218 (336)
.+.|++|-.++...- -+.+. -.|...... +.|+++.+..... + -..+-..-+..-.. +..|..
T Consensus 170 reaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~---ldadp~ 246 (531)
T COG3898 170 REAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSL---LDADPA 246 (531)
T ss_pred HHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHH---hcCChH
Confidence 999999988887663 23332 223322222 7777777754321 1 11222222222111 245677
Q ss_pred HHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCHHHHHHHHHHHH
Q 019734 219 EAARWYLRAAE--GGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQLEHGLGLFTEGEMMKAVVYLELAT 296 (336)
Q Consensus 219 ~A~~~~~~a~~--~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~A~ 296 (336)
.|...-..+.. ++...+...-+..++... +..++-..++.+-+..+ -....+-+++.+.||.... -++++.
T Consensus 247 ~Ar~~A~~a~KL~pdlvPaav~AAralf~d~----~~rKg~~ilE~aWK~eP-HP~ia~lY~~ar~gdta~d--RlkRa~ 319 (531)
T COG3898 247 SARDDALEANKLAPDLVPAAVVAARALFRDG----NLRKGSKILETAWKAEP-HPDIALLYVRARSGDTALD--RLKRAK 319 (531)
T ss_pred HHHHHHHHHhhcCCccchHHHHHHHHHHhcc----chhhhhhHHHHHHhcCC-ChHHHHHHHHhcCCCcHHH--HHHHHH
Confidence 77777777754 466777777777776533 88888888888876532 1123333344445554433 334433
Q ss_pred ---HcCcHHHHHHHHHHHhhcChhcHHHHHHHHHHhhcCCC
Q 019734 297 ---RAGETAADHVKNVILQQLSATSRDRAMLVVDSWRAMPS 334 (336)
Q Consensus 297 ---~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 334 (336)
...+++++..+.....-+..++...|...+.......|
T Consensus 320 ~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~p 360 (531)
T COG3898 320 KLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAP 360 (531)
T ss_pred HHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCc
Confidence 34566777777777777777777777777666655544
No 342
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=66.79 E-value=83 Score=27.04 Aligned_cols=45 Identities=16% Similarity=0.065 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHc-------CCHHH---HHHHHHHhhc-cCCHHHHHHHHHHHHH
Q 019734 253 HRQARKWMKRAADC-------GHGKA---QLEHGLGLFT-EGEMMKAVVYLELATR 297 (336)
Q Consensus 253 ~~~A~~~~~~a~~~-------~~~~a---~~~lg~~~~~-~~~~~~A~~~~~~A~~ 297 (336)
.++|...|++|.+. -+|-. ..|.+..|++ .|+.++|+...+.|++
T Consensus 142 ~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd 197 (236)
T PF00244_consen 142 AEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFD 197 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 46788888888652 22322 2455555544 8999999999988875
No 343
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=66.73 E-value=12 Score=32.00 Aligned_cols=64 Identities=13% Similarity=-0.015 Sum_probs=52.0
Q ss_pred cCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcC---CHHHHHHHH
Q 019734 75 SFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG---STLAMVDAG 144 (336)
Q Consensus 75 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~lg 144 (336)
..+.++.+.+.++|.+.+.-+|+ ....|+.+|..-.. .++++.|...|++.++.+ +..+-..|+
T Consensus 5 ~~~~~D~~aaaely~qal~lap~--w~~gwfR~g~~~ek----ag~~daAa~a~~~~L~ldp~D~~gaa~kLa 71 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPE--WAAGWFRLGEYTEK----AGEFDAAAAAYEEVLELDPEDHGGAALKLA 71 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCch--hhhhhhhcchhhhh----cccHHHHHHHHHHHHcCCcccccchhhhHH
Confidence 35778999999999999998888 88999999998777 689999999999999874 334444444
No 344
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=65.96 E-value=2.4e+02 Score=32.72 Aligned_cols=131 Identities=11% Similarity=0.003 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHCCC------------
Q 019734 169 PAGQFNLGISYLQ----EEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGY------------ 232 (336)
Q Consensus 169 ~~a~~~Lg~~~~~----~~A~~~~~ka~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~~~------------ 232 (336)
.+.|..++.+-.. +.|..++-+|.+...+.+....|..+=. .+|...|+..++..++...
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r~~~i~~E~AK~lW~----~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~ 1745 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESRLPEIVLERAKLLWQ----TGDELNALSVLQEILSKNFPDLHTPYTDTPQ 1745 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhcccchHHHHHHHHHHh----hccHHHHHHHHHHHHHhhcccccCCccccch
Confidence 3444445444443 7777777788777788888888877666 7888888888888764321
Q ss_pred -------HHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcC--CHHHHHHHHHHhhc------------cCCHHH---H
Q 019734 233 -------VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCG--HGKAQLEHGLGLFT------------EGEMMK---A 288 (336)
Q Consensus 233 -------~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~------------~~~~~~---A 288 (336)
..++..++.+...-. ....+.-+.+|+.+.+.. -.+.+|.||..|.+ .|++.. +
T Consensus 1746 ~~n~~i~~~~~L~~~~~~~es~--n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~yy~kll~~~~~~~~E~~g~~~~~l~~ 1823 (2382)
T KOG0890|consen 1746 SVNLLIFKKAKLKITKYLEESG--NFESKDILKYYHDAKAILPEWEDKHYHLGKYYDKLLEDYKSNKMEKSGRVLSLLKA 1823 (2382)
T ss_pred hhhhhhhhhHHHHHHHHHHHhc--chhHHHHHHHHHHHHHHcccccCceeeHHHHHHHHhhhhhcccccccccHHHHHHH
Confidence 224445544443221 234556677777776642 23455677753332 455555 7
Q ss_pred HHHHHHHHHcCcHHHHH
Q 019734 289 VVYLELATRAGETAADH 305 (336)
Q Consensus 289 ~~~~~~A~~~~~~~a~~ 305 (336)
+..|.+++..|+..-..
T Consensus 1824 ~~~~~~sl~yg~~~iyq 1840 (2382)
T KOG0890|consen 1824 IYFFGRALYYGNQHLYQ 1840 (2382)
T ss_pred HHHHHHHHHhcchhHHH
Confidence 88888888887654433
No 345
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.36 E-value=38 Score=32.58 Aligned_cols=68 Identities=19% Similarity=0.270 Sum_probs=51.8
Q ss_pred HHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHcC-CHHHH
Q 019734 104 LLRWGKRFKHGRGVRKNLDKALDSFLKGAAR---------GSTLAMVDAGLMYWEMDK-KEAAISLYRQAAVLG-DPAGQ 172 (336)
Q Consensus 104 ~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~---------~~~~a~~~lg~~~~~~~~-~~~A~~~~~~a~~~~-~~~a~ 172 (336)
.+.+|.+..+ .+|...|..+|...++. -.|.|+|.||.+|+..+. ..++.+|+.+|-+-. +.+--
T Consensus 452 ~lL~g~~lR~----Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY~le 527 (546)
T KOG3783|consen 452 YLLKGVILRN----LGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASDYELE 527 (546)
T ss_pred HHHHHHHHHH----cCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhccccchh
Confidence 3457888877 56999999999988743 147899999999999877 999999999997653 44443
Q ss_pred HHH
Q 019734 173 FNL 175 (336)
Q Consensus 173 ~~L 175 (336)
..|
T Consensus 528 nRL 530 (546)
T KOG3783|consen 528 NRL 530 (546)
T ss_pred hHH
Confidence 333
No 346
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=65.36 E-value=1e+02 Score=29.34 Aligned_cols=107 Identities=21% Similarity=0.097 Sum_probs=59.9
Q ss_pred CHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 019734 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAGQFNLGISY 179 (336)
Q Consensus 100 ~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~ 179 (336)
+++.-+.|++- -++++.|.+..+ ...++.-|-.||......|+++-|..+|+++-+ ...+..|..+.
T Consensus 320 D~~~rFeLAl~-------lg~L~~A~~~a~---~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---~~~L~lLy~~~ 386 (443)
T PF04053_consen 320 DPDHRFELALQ-------LGNLDIALEIAK---ELDDPEKWKQLGDEALRQGNIELAEECYQKAKD---FSGLLLLYSST 386 (443)
T ss_dssp -HHHHHHHHHH-------CT-HHHHHHHCC---CCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT----HHHHHHHHHHC
T ss_pred ChHHHhHHHHh-------cCCHHHHHHHHH---hcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---ccccHHHHHHh
Confidence 66777777765 368888765433 346888999999999999999999999988642 22222222222
Q ss_pred HH-HHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCccCHHHHHHHHHH
Q 019734 180 LQ-EEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLR 226 (336)
Q Consensus 180 ~~-~~A~~~~~ka~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~ 226 (336)
-. ++-.+.-..|...++....+.-+.. .+|.++.+..+.+
T Consensus 387 g~~~~L~kl~~~a~~~~~~n~af~~~~~-------lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 387 GDREKLSKLAKIAEERGDINIAFQAALL-------LGDVEECVDLLIE 427 (443)
T ss_dssp T-HHHHHHHHHHHHHTT-HHHHHHHHHH-------HT-HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHH-------cCCHHHHHHHHHH
Confidence 11 2222222333444555444443333 3556666666655
No 347
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=64.97 E-value=34 Score=26.17 Aligned_cols=57 Identities=4% Similarity=0.031 Sum_probs=39.9
Q ss_pred HHHHHHHhcCCCCcCCHHHHHHHHHHHHHcC-----------------CHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 019734 105 LRWGKRFKHGRGVRKNLDKALDSFLKGAARG-----------------STLAMVDAGLMYWEMDKKEAAISLYRQAAV 165 (336)
Q Consensus 105 ~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~~-----------------~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~ 165 (336)
..+|..... .+++-.++-+|.+|+... ...++.+|+.++...||.+-.++|++-|-+
T Consensus 5 tllAd~a~~----~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE 78 (140)
T PF10952_consen 5 TLLADQAFK----EADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASE 78 (140)
T ss_pred HHHHHHHhh----cccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHH
Confidence 344554444 467777777777776420 235678899999999999999999888764
No 348
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.59 E-value=1.1e+02 Score=27.84 Aligned_cols=139 Identities=14% Similarity=0.061 Sum_probs=91.9
Q ss_pred CCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc---CCH-----HHHHHHHHHHHH--HHHHH
Q 019734 119 KNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL---GDP-----AGQFNLGISYLQ--EEAVK 186 (336)
Q Consensus 119 ~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~-----~a~~~Lg~~~~~--~~A~~ 186 (336)
+++.+|...+++.++. .+-.++..--..++..|+.+.....+++.+.. +.| ..++..|..-.. ++|.+
T Consensus 117 g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk 196 (491)
T KOG2610|consen 117 GKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAEK 196 (491)
T ss_pred ccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHHH
Confidence 4666666667777664 24455555566777788888888888888855 332 222222222222 88888
Q ss_pred HHHHHHHcC--CHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHC---CC---HHHHHHHHHHHHcCCCCcccHHHHHH
Q 019734 187 LLYQASIAG--HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG---GY---VRAMYNTSLCYSFGEGLPLSHRQARK 258 (336)
Q Consensus 187 ~~~ka~~~~--~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~---~~---~~a~~~lg~~~~~~~g~~~~~~~A~~ 258 (336)
.-.++++.+ +.-|.+.++.+++. .++.+++.++..+.-+. +. ...+...+.+|..+. .++.|+.
T Consensus 197 ~A~ralqiN~~D~Wa~Ha~aHVlem----~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~a----eye~ale 268 (491)
T KOG2610|consen 197 QADRALQINRFDCWASHAKAHVLEM----NGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGA----EYEKALE 268 (491)
T ss_pred HHHhhccCCCcchHHHHHHHHHHHh----cchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhccc----chhHHHH
Confidence 888887765 66677888888887 78888998888775322 22 334556677776653 7888888
Q ss_pred HHHHHHH
Q 019734 259 WMKRAAD 265 (336)
Q Consensus 259 ~~~~a~~ 265 (336)
.|.+-+-
T Consensus 269 IyD~ei~ 275 (491)
T KOG2610|consen 269 IYDREIW 275 (491)
T ss_pred HHHHHHH
Confidence 8877653
No 349
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=64.27 E-value=96 Score=26.86 Aligned_cols=47 Identities=15% Similarity=0.030 Sum_probs=32.1
Q ss_pred cHHHHHHHHHHHHHc-------CCHHH---HHHHHHHhhc-cCCHHHHHHHHHHHHHc
Q 019734 252 SHRQARKWMKRAADC-------GHGKA---QLEHGLGLFT-EGEMMKAVVYLELATRA 298 (336)
Q Consensus 252 ~~~~A~~~~~~a~~~-------~~~~a---~~~lg~~~~~-~~~~~~A~~~~~~A~~~ 298 (336)
-.++|...|+.|.+. -+|-. ..|....|++ .++.++|+...+.|+..
T Consensus 143 ~~~~a~~aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd~ 200 (244)
T smart00101 143 AAENTLVAYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDE 200 (244)
T ss_pred HHHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 366889999988763 12221 2555565665 79999999888887753
No 350
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=63.76 E-value=2.9e+02 Score=32.14 Aligned_cols=230 Identities=10% Similarity=0.040 Sum_probs=131.7
Q ss_pred CCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHH--------
Q 019734 99 REAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPA-------- 170 (336)
Q Consensus 99 ~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~-------- 170 (336)
.-+..|..++.+-.. .|.++.|..++-.|.+.+-+++....+..++..||...|+..+++.++...++
T Consensus 1668 ~~ge~wLqsAriaR~----aG~~q~A~nall~A~e~r~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~ 1743 (2382)
T KOG0890|consen 1668 RLGECWLQSARIARL----AGHLQRAQNALLNAKESRLPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDT 1743 (2382)
T ss_pred hhHHHHHHHHHHHHh----cccHHHHHHHHHhhhhcccchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCcccc
Confidence 356778888888775 57999999999999999999999999999999999999999999998542221
Q ss_pred -----------HHHHHHHHHHH------HHHHHHHHHHHHc--CCHHHHHHHHHHHhc-------C-CCCccCHHH---H
Q 019734 171 -----------GQFNLGISYLQ------EEAVKLLYQASIA--GHVRAQYQLALCLHR-------G-RGVDFNLQE---A 220 (336)
Q Consensus 171 -----------a~~~Lg~~~~~------~~A~~~~~ka~~~--~~~~a~~~lg~~~~~-------g-~g~~~~~~~---A 220 (336)
+.+.++..... +.-+.+|+.+.+. .-.+-+|.||..|.. + .-..|++.- +
T Consensus 1744 p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~yy~kll~~~~~~~~E~~g~~~~~l~~ 1823 (2382)
T KOG0890|consen 1744 PQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLGKYYDKLLEDYKSNKMEKSGRVLSLLKA 1823 (2382)
T ss_pred chhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHHHHHHHHhhhhhcccccccccHHHHHHH
Confidence 22223222222 6667778777553 234456666644431 0 012234433 7
Q ss_pred HHHHHHHHHCCCHHHHH---HHHHHHHc--------CCCC-----cccHHHHHHHHHHHHHc-CCHHHHHHHHHHhhc-c
Q 019734 221 ARWYLRAAEGGYVRAMY---NTSLCYSF--------GEGL-----PLSHRQARKWMKRAADC-GHGKAQLEHGLGLFT-E 282 (336)
Q Consensus 221 ~~~~~~a~~~~~~~a~~---~lg~~~~~--------~~g~-----~~~~~~A~~~~~~a~~~-~~~~a~~~lg~~~~~-~ 282 (336)
+.+|.+++.-|+...+- .+-.++.. +.+. .++.+.--...+.++.. ..-..+..+..+..+ .
T Consensus 1824 ~~~~~~sl~yg~~~iyqsmPRllTLWLD~~t~~~~~ek~~r~ei~s~~~~~in~~i~~~~~~lp~Y~f~ta~sQLlSRic 1903 (2382)
T KOG0890|consen 1824 IYFFGRALYYGNQHLYQSMPRLLTLWLDIGTHISSVEKAPRGEIVSKNLKLINSLIEEALEHLPTYQFYTAYSQLLSRIC 1903 (2382)
T ss_pred HHHHHHHHHhcchhHHHhhhHHHHHHHhhcchhcccccCChhhhhhhhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHc
Confidence 77778888776543322 22222221 1111 11111222222223222 122222344444433 3
Q ss_pred CCHHHHHHHHHHHH----HcCcHHHHHHHHHHHhhcChhcHHHHHHHHHHhhcC
Q 019734 283 GEMMKAVVYLELAT----RAGETAADHVKNVILQQLSATSRDRAMLVVDSWRAM 332 (336)
Q Consensus 283 ~~~~~A~~~~~~A~----~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 332 (336)
...++.....+..+ ..-+..+.=....+...-.+..+.+.+++.++.+..
T Consensus 1904 H~~~dV~~vl~~II~~l~~~YPqq~lW~~~a~~kS~~p~R~~R~keIL~k~~~~ 1957 (2382)
T KOG0890|consen 1904 HPNQDVARVLKHIIAKLVLAYPQQTLWQSAALSKSNVPSRVERCKEILTKSRRQ 1957 (2382)
T ss_pred CCchHHHHHHHHHHHHHHHhCchHHHHHHHHHHhcccHHHHHHHHHHHHHHHhc
Confidence 34444444444443 234445555556666666777777777777765543
No 351
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=63.29 E-value=13 Score=25.70 Aligned_cols=31 Identities=23% Similarity=0.277 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 019734 122 DKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAV 165 (336)
Q Consensus 122 ~~A~~~~~~A~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~ 165 (336)
.+|+..+.+|++.+ ..|++++|..+|..+++
T Consensus 4 ~~A~~l~~~Ave~d-------------~~~~y~eA~~~Y~~~i~ 34 (75)
T cd02677 4 EQAAELIRLALEKE-------------EEGDYEAAFEFYRAGVD 34 (75)
T ss_pred HHHHHHHHHHHHHH-------------HHhhHHHHHHHHHHHHH
Confidence 45666666665543 23677777777777664
No 352
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=62.73 E-value=43 Score=22.31 Aligned_cols=25 Identities=12% Similarity=0.065 Sum_probs=18.7
Q ss_pred HHHHHhhccCCHHHHHHHHHHHHHc
Q 019734 274 EHGLGLFTEGEMMKAVVYLELATRA 298 (336)
Q Consensus 274 ~lg~~~~~~~~~~~A~~~~~~A~~~ 298 (336)
.-|.-..+.|++++|+.+|..|++.
T Consensus 10 ~~Av~~D~~g~~~~A~~~Y~~ai~~ 34 (69)
T PF04212_consen 10 KKAVEADEAGNYEEALELYKEAIEY 34 (69)
T ss_dssp HHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 3444456688999999999998863
No 353
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=62.48 E-value=1.4e+02 Score=30.35 Aligned_cols=91 Identities=9% Similarity=0.002 Sum_probs=56.4
Q ss_pred CHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcC-------CHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHc-C-
Q 019734 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG-------STLAMVDAGLMYWE---MDKKEAAISLYRQAAVL-G- 167 (336)
Q Consensus 100 ~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~~-------~~~a~~~lg~~~~~---~~~~~~A~~~~~~a~~~-~- 167 (336)
+++.-.++-..|.. .+|++.-+++-+..-+.- .....+..+..+-+ -||-++|+.....+++. |
T Consensus 200 ~~d~V~nlmlSyRD----vQdY~amirLVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~ 275 (1226)
T KOG4279|consen 200 HPDTVSNLMLSYRD----VQDYDAMIRLVEDLKRIPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGP 275 (1226)
T ss_pred CHHHHHHHHhhhcc----ccchHHHHHHHHHHHhCcchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCC
Confidence 45566666666666 577777777666443321 11222333333322 27888888888888766 2
Q ss_pred -CHHHHHHHHHHHHH-------------HHHHHHHHHHHHc
Q 019734 168 -DPAGQFNLGISYLQ-------------EEAVKLLYQASIA 194 (336)
Q Consensus 168 -~~~a~~~Lg~~~~~-------------~~A~~~~~ka~~~ 194 (336)
.++.+..-|++|.. +.|++||+||-+.
T Consensus 276 vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFev 316 (1226)
T KOG4279|consen 276 VAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEV 316 (1226)
T ss_pred CCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhcc
Confidence 35666777888876 7788888888664
No 354
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=61.72 E-value=17 Score=25.35 Aligned_cols=25 Identities=16% Similarity=0.118 Sum_probs=18.8
Q ss_pred HHHHHHhhccCCHHHHHHHHHHHHH
Q 019734 273 LEHGLGLFTEGEMMKAVVYLELATR 297 (336)
Q Consensus 273 ~~lg~~~~~~~~~~~A~~~~~~A~~ 297 (336)
.+.|..+.+.|+.++|+.+|++|++
T Consensus 12 I~kaL~~dE~g~~e~Al~~Y~~gi~ 36 (79)
T cd02679 12 ISKALRADEWGDKEQALAHYRKGLR 36 (79)
T ss_pred HHHHhhhhhcCCHHHHHHHHHHHHH
Confidence 3444446667899999999999986
No 355
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=61.18 E-value=34 Score=33.15 Aligned_cols=64 Identities=13% Similarity=-0.024 Sum_probs=34.2
Q ss_pred CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH-------cCCHHHHHHHHHHhhccCCHHHHHHHHHHHHH
Q 019734 232 YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAAD-------CGHGKAQLEHGLGLFTEGEMMKAVVYLELATR 297 (336)
Q Consensus 232 ~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~-------~~~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~ 297 (336)
++.|+-+||.+-.... ..+-..++..|.+|+. ..+...+..+|-.|++.+++.+|+..|-.|..
T Consensus 276 YPmALg~LadLeEi~p--t~~r~~~~~l~~~AI~sa~~~Y~n~HvYPYty~gg~~yR~~~~~eA~~~Wa~aa~ 346 (618)
T PF05053_consen 276 YPMALGNLADLEEIDP--TPGRPTPLELFNEAISSARTYYNNHHVYPYTYLGGYYYRHKRYREALRSWAEAAD 346 (618)
T ss_dssp -HHHHHHHHHHHHHS----TTS--HHHHHHHHHHHHHHHCTT--SHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred CchhhhhhHhHHhhcc--CCCCCCHHHHHHHHHHHHHHHhcCCccccceehhhHHHHHHHHHHHHHHHHHHHH
Confidence 4555566665554321 1133445556666654 23455566777777777777777777777754
No 356
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=60.39 E-value=18 Score=24.78 Aligned_cols=32 Identities=31% Similarity=0.313 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 019734 121 LDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAV 165 (336)
Q Consensus 121 ~~~A~~~~~~A~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~ 165 (336)
+++|+.+..+|+.. -..|++++|+.+|.++++
T Consensus 5 ~~~A~~li~~Av~~-------------d~~g~~~eAl~~Y~~a~e 36 (77)
T smart00745 5 LSKAKELISKALKA-------------DEAGDYEEALELYKKAIE 36 (77)
T ss_pred HHHHHHHHHHHHHH-------------HHcCCHHHHHHHHHHHHH
Confidence 45566666665443 246777777777777764
No 357
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=59.76 E-value=1.1e+02 Score=28.55 Aligned_cols=63 Identities=14% Similarity=0.025 Sum_probs=35.3
Q ss_pred HHHHHhcCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHH
Q 019734 69 LNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAA 133 (336)
Q Consensus 69 l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~ 133 (336)
+.++...|+.++|..|..++..+.+..+.......+..|..+|..- - .-|+++|.+++++...
T Consensus 135 ~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~W-D-~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 135 WRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAW-D-RFDHKEALEYLEKLLK 197 (379)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHH-H-ccCHHHHHHHHHHHHH
Confidence 5667777788888888777777776633211123344444444331 1 2456666666666554
No 358
>PF12854 PPR_1: PPR repeat
Probab=59.74 E-value=22 Score=20.01 Aligned_cols=26 Identities=12% Similarity=-0.054 Sum_probs=19.8
Q ss_pred HHHHHHHHHHhhccCCHHHHHHHHHH
Q 019734 269 GKAQLEHGLGLFTEGEMMKAVVYLEL 294 (336)
Q Consensus 269 ~~a~~~lg~~~~~~~~~~~A~~~~~~ 294 (336)
...+..|-..|.+.|+.++|...|++
T Consensus 7 ~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 7 VVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred HhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 34566777778888899998888865
No 359
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=59.52 E-value=18 Score=19.06 Aligned_cols=28 Identities=14% Similarity=0.105 Sum_probs=19.0
Q ss_pred HHHHHHHhhccCCHHHHHHHHHHHHHcC
Q 019734 272 QLEHGLGLFTEGEMMKAVVYLELATRAG 299 (336)
Q Consensus 272 ~~~lg~~~~~~~~~~~A~~~~~~A~~~~ 299 (336)
+..+-..|.+.|++++|..+|++-.+.|
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 3445556777888888888887766543
No 360
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=58.81 E-value=1e+02 Score=27.26 Aligned_cols=96 Identities=15% Similarity=0.016 Sum_probs=73.0
Q ss_pred HHHHHHHHHhcCC-CCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcC--CHHHHHHH
Q 019734 199 AQYQLALCLHRGR-GVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCG--HGKAQLEH 275 (336)
Q Consensus 199 a~~~lg~~~~~g~-g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~~--~~~a~~~l 275 (336)
.....|..+..|. .....+..=+.-.+++.+.....++..++..+... ++.+.+...+++-+... +...+..|
T Consensus 118 ~~~~~~~~~~~g~~~~d~~f~~WV~~~R~~l~e~~~~~l~~lae~~~~~----~~~~~~~~~l~~Li~~dp~~E~~~~~l 193 (280)
T COG3629 118 RFEQAGELLSEGPVLGDDRFDEWVLEQRRALEELFIKALTKLAEALIAC----GRADAVIEHLERLIELDPYDEPAYLRL 193 (280)
T ss_pred HHHHHHHHhhcCCcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----ccHHHHHHHHHHHHhcCccchHHHHHH
Confidence 3444555555433 23445777788888888888899999999998653 38999999999998764 46677788
Q ss_pred HHHhhccCCHHHHHHHHHHHHHc
Q 019734 276 GLGLFTEGEMMKAVVYLELATRA 298 (336)
Q Consensus 276 g~~~~~~~~~~~A~~~~~~A~~~ 298 (336)
-..|...|+...|+..|+.....
T Consensus 194 m~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 194 MEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHcCCchHHHHHHHHHHHH
Confidence 88899999999999999988764
No 361
>PF13041 PPR_2: PPR repeat family
Probab=58.05 E-value=27 Score=21.36 Aligned_cols=30 Identities=13% Similarity=0.125 Sum_probs=24.0
Q ss_pred HHHHHHHHHhhccCCHHHHHHHHHHHHHcC
Q 019734 270 KAQLEHGLGLFTEGEMMKAVVYLELATRAG 299 (336)
Q Consensus 270 ~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~ 299 (336)
..+..+-..|.+.|++++|...|++..+.|
T Consensus 4 ~~yn~li~~~~~~~~~~~a~~l~~~M~~~g 33 (50)
T PF13041_consen 4 VTYNTLISGYCKAGKFEEALKLFKEMKKRG 33 (50)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHcC
Confidence 345666677888999999999999988876
No 362
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=57.49 E-value=61 Score=22.35 Aligned_cols=22 Identities=18% Similarity=0.155 Sum_probs=16.4
Q ss_pred HHhhccCCHHHHHHHHHHHHHc
Q 019734 277 LGLFTEGEMMKAVVYLELATRA 298 (336)
Q Consensus 277 ~~~~~~~~~~~A~~~~~~A~~~ 298 (336)
.-+...|++++|+.+|++|++.
T Consensus 14 Ve~D~~gr~~eAi~~Y~~aIe~ 35 (75)
T cd02682 14 VKAEKEGNAEDAITNYKKAIEV 35 (75)
T ss_pred HHHHhcCCHHHHHHHHHHHHHH
Confidence 3355678888888888888763
No 363
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=56.47 E-value=23 Score=24.13 Aligned_cols=17 Identities=35% Similarity=0.450 Sum_probs=12.0
Q ss_pred cCCCHHHHHHHHHHHHH
Q 019734 149 EMDKKEAAISLYRQAAV 165 (336)
Q Consensus 149 ~~~~~~~A~~~~~~a~~ 165 (336)
..|++++|+.+|.+|++
T Consensus 18 ~~g~~~~Al~~Y~~a~e 34 (75)
T cd02656 18 EDGNYEEALELYKEALD 34 (75)
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 34777777777777764
No 364
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=56.09 E-value=63 Score=22.15 Aligned_cols=32 Identities=16% Similarity=0.058 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCHHHHHHHHHHHHH
Q 019734 253 HRQARKWMKRAADCGHGKAQLEHGLGLFTEGEMMKAVVYLELATR 297 (336)
Q Consensus 253 ~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~ 297 (336)
..+|+...++|++ ....|++++|+.+|..|++
T Consensus 3 l~~Ai~lv~~Av~-------------~D~~g~y~eA~~lY~~ale 34 (75)
T cd02684 3 LEKAIALVVQAVK-------------KDQRGDAAAALSLYCSALQ 34 (75)
T ss_pred HHHHHHHHHHHHH-------------HHHhccHHHHHHHHHHHHH
Confidence 4455556655543 3335677777777777765
No 365
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=55.90 E-value=1.2e+02 Score=26.98 Aligned_cols=94 Identities=12% Similarity=0.094 Sum_probs=59.6
Q ss_pred CHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHC--------CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc-
Q 019734 196 HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--------GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC- 266 (336)
Q Consensus 196 ~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~--------~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~- 266 (336)
-.+|+.++|..|-+ ..|.+.+.+|..+.... +..-....||.+|.... -.++.++...-.++.
T Consensus 114 ~~ea~~n~aeyY~q----i~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~----vV~e~lE~~~~~iEkG 185 (412)
T COG5187 114 GSEADRNIAEYYCQ----IMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRK----VVEESLEVADDIIEKG 185 (412)
T ss_pred HHHHHHHHHHHHHH----HhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHH----HHHHHHHHHHHHHHhC
Confidence 36789999999998 88999999998876432 23445668888885433 334444444444443
Q ss_pred CCHHHHH----HHHHHhhccCCHHHHHHHHHHHHH
Q 019734 267 GHGKAQL----EHGLGLFTEGEMMKAVVYLELATR 297 (336)
Q Consensus 267 ~~~~a~~----~lg~~~~~~~~~~~A~~~~~~A~~ 297 (336)
|+.+-.+ .-|.......++.+|...+...+.
T Consensus 186 gDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~ 220 (412)
T COG5187 186 GDWERRNRYKVYKGIFKMMRRNFKEAAILLSDILP 220 (412)
T ss_pred CCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhc
Confidence 4544432 335544556778888777776654
No 366
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=55.79 E-value=50 Score=31.93 Aligned_cols=89 Identities=11% Similarity=-0.075 Sum_probs=43.0
Q ss_pred HHHHHhcCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcC--CHHHHHHHHHH
Q 019734 69 LNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLM 146 (336)
Q Consensus 69 l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~ 146 (336)
++.+...|..+....++..|-+.....++ ....+-+.+.++.. .+-.+|.-.|+.--..|+..+ ...+++.|+.+
T Consensus 378 ~~egnd~ly~~~~~~~i~~~s~a~q~~~~--~~~~l~nraa~lmk-RkW~~d~~~AlrDch~Alrln~s~~kah~~la~a 454 (758)
T KOG1310|consen 378 KTEGNDGLYESIVSGAISHYSRAIQYVPD--AIYLLENRAAALMK-RKWRGDSYLALRDCHVALRLNPSIQKAHFRLARA 454 (758)
T ss_pred HhhccchhhhHHHHHHHHHHHHHhhhccc--hhHHHHhHHHHHHh-hhccccHHHHHHhHHhhccCChHHHHHHHHHHHH
Confidence 33333444444455555555555544443 22223233333332 111335555555555555553 44566666666
Q ss_pred HhcCCCHHHHHHHH
Q 019734 147 YWEMDKKEAAISLY 160 (336)
Q Consensus 147 ~~~~~~~~~A~~~~ 160 (336)
+...+++.+|+.+.
T Consensus 455 L~el~r~~eal~~~ 468 (758)
T KOG1310|consen 455 LNELTRYLEALSCH 468 (758)
T ss_pred HHHHhhHHHhhhhH
Confidence 66666666666553
No 367
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=54.74 E-value=3e+02 Score=29.60 Aligned_cols=74 Identities=16% Similarity=0.112 Sum_probs=52.1
Q ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHH--------------HHHHHHHHHHHHc----C
Q 019734 135 GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL-GDPAGQFNLGISYLQ--------------EEAVKLLYQASIA----G 195 (336)
Q Consensus 135 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~-~~~~a~~~Lg~~~~~--------------~~A~~~~~ka~~~----~ 195 (336)
..+.-.+.+|.+|...|...+|+++|.+|... +.-+++..+-.-... .+|++||.+++.. +
T Consensus 918 lk~v~rfmlg~~yl~tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn 997 (1480)
T KOG4521|consen 918 LKPVIRFMLGIAYLGTGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHN 997 (1480)
T ss_pred hHHHHHHhhheeeecCCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhc
Confidence 34556678999999999999999999999866 555566555433221 6689999998753 5
Q ss_pred CHHHHHHHHHHHh
Q 019734 196 HVRAQYQLALCLH 208 (336)
Q Consensus 196 ~~~a~~~lg~~~~ 208 (336)
.++-...++..-.
T Consensus 998 ~~E~vcQlA~~AI 1010 (1480)
T KOG4521|consen 998 HAEEVCQLAVKAI 1010 (1480)
T ss_pred cHHHHHHHHHHHH
Confidence 5665556655443
No 368
>PRK10941 hypothetical protein; Provisional
Probab=54.36 E-value=94 Score=27.36 Aligned_cols=61 Identities=20% Similarity=0.192 Sum_probs=42.8
Q ss_pred HHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHH
Q 019734 107 WGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAG 171 (336)
Q Consensus 107 lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a 171 (336)
|=.+|.. .+++++|+.+-+..+.. +++.-+...|.+|.+.+.+..|+.-++.-++. +++.+
T Consensus 187 LK~~~~~----~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a 251 (269)
T PRK10941 187 LKAALME----EKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPIS 251 (269)
T ss_pred HHHHHHH----cCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhH
Confidence 4444444 57888888888877766 46777777888888888888888777777654 44444
No 369
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=54.14 E-value=2.4e+02 Score=28.13 Aligned_cols=73 Identities=18% Similarity=0.132 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHcC------CHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHcC----CH----HHHHHHHHHHHH---H
Q 019734 121 LDKALDSFLKGAARG------STLAMVDAGLMYW-EMDKKEAAISLYRQAAVLG----DP----AGQFNLGISYLQ---E 182 (336)
Q Consensus 121 ~~~A~~~~~~A~~~~------~~~a~~~lg~~~~-~~~~~~~A~~~~~~a~~~~----~~----~a~~~Lg~~~~~---~ 182 (336)
...|+++++.+.+.. .....+.+|.++. +..++++|..++.|++..- .. .+.+.|+.++.. .
T Consensus 37 I~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~ 116 (608)
T PF10345_consen 37 IATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPK 116 (608)
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHH
Confidence 455566666555321 2456677777776 4577888888888876431 11 233344444444 3
Q ss_pred HHHHHHHHHHH
Q 019734 183 EAVKLLYQASI 193 (336)
Q Consensus 183 ~A~~~~~ka~~ 193 (336)
.|+....+.++
T Consensus 117 ~a~~~l~~~I~ 127 (608)
T PF10345_consen 117 AALKNLDKAIE 127 (608)
T ss_pred HHHHHHHHHHH
Confidence 35555555544
No 370
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=53.77 E-value=31 Score=31.92 Aligned_cols=56 Identities=16% Similarity=0.189 Sum_probs=34.0
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHhhccC------------CHHHHHHHHHHHHHcCcHHHHHHH
Q 019734 252 SHRQARKWMKRAADCGHGKAQLEHGLGLFTEG------------EMMKAVVYLELATRAGETAADHVK 307 (336)
Q Consensus 252 ~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~------------~~~~A~~~~~~A~~~~~~~a~~~~ 307 (336)
-..+|+.|+++|.....|..+.+++.++...| =|.+|...+.+|=+.++......+
T Consensus 333 l~~~Al~yL~kA~d~ddPetWv~vAEa~I~LGNL~d~eS~eQe~~Y~eAE~iL~kAN~at~GKy~diL 400 (404)
T PF12753_consen 333 LIKKALEYLKKAQDEDDPETWVDVAEAMIDLGNLYDNESKEQEKAYKEAEKILKKANKATNGKYQDIL 400 (404)
T ss_dssp HHHHHHHHHHHHHHS--TTHHHHHHHHHHHHHHH-SSHHH-HHHHHHHHHHHHHHHHHTT----HHHH
T ss_pred HHHHHHHHHHHhhccCChhHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHHHHhhccccchHHHH
Confidence 47789999999998888777766666666654 355666666666555554444433
No 371
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=52.32 E-value=45 Score=31.52 Aligned_cols=56 Identities=14% Similarity=0.223 Sum_probs=32.0
Q ss_pred HHHHHHhcCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHH
Q 019734 68 VLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLK 130 (336)
Q Consensus 68 ~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~ 130 (336)
.++.|--+|..|+|+++. .|-.|+.+-++ .+.++..+|++... .+++.+|-.++..
T Consensus 465 ~LaDAEyLysqgey~kc~-~ys~WL~~iaP--S~~~~RLlGl~l~e----~k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 465 FLADAEYLYSQGEYHKCY-LYSSWLTKIAP--SPQAYRLLGLCLME----NKRYQEAWEYLQK 520 (549)
T ss_pred HHHHHHHHHhcccHHHHH-HHHHHHHHhCC--cHHHHHHHHHHHHH----HhhHHHHHHHHHh
Confidence 344444455666666653 44455555443 56666666666665 4666666666654
No 372
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=52.29 E-value=1.6e+02 Score=25.68 Aligned_cols=105 Identities=11% Similarity=-0.008 Sum_probs=56.9
Q ss_pred cCCCHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCC----CCccCHHHH
Q 019734 149 EMDKKEAAISLYRQAA----VLGDPAGQFNLGISYLQEEAVKLLYQASIAGHVRAQYQLALCLHRGR----GVDFNLQEA 220 (336)
Q Consensus 149 ~~~~~~~A~~~~~~a~----~~~~~~a~~~Lg~~~~~~~A~~~~~ka~~~~~~~a~~~lg~~~~~g~----g~~~~~~~A 220 (336)
..+++++|++.+.+.+ +.+-...-..|+..+. +.|+++-..-+....-++..++..-. ....=.+.|
T Consensus 2 ~~kky~eAidLL~~Ga~~ll~~~Q~~sg~DL~~lli-----ev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~a 76 (260)
T PF04190_consen 2 KQKKYDEAIDLLYSGALILLKHGQYGSGADLALLLI-----EVYEKSEDPVDEESIARLIELISLFPPEEPERKKFIKAA 76 (260)
T ss_dssp HTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH-----HHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHH-----HHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHH
Confidence 3578899999988765 3355555556665543 45555433334455566766665311 001112455
Q ss_pred HHHHHHH--HHCCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHH
Q 019734 221 ARWYLRA--AEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRA 263 (336)
Q Consensus 221 ~~~~~~a--~~~~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a 263 (336)
+.|- +. -..|++.-+..+|..|.+. +++.+|..+|-.+
T Consensus 77 i~WS-~~~~~~~Gdp~LH~~~a~~~~~e----~~~~~A~~Hfl~~ 116 (260)
T PF04190_consen 77 IKWS-KFGSYKFGDPELHHLLAEKLWKE----GNYYEAERHFLLG 116 (260)
T ss_dssp HHHH-HTSS-TT--HHHHHHHHHHHHHT----T-HHHHHHHHHTS
T ss_pred HHHH-ccCCCCCCCHHHHHHHHHHHHhh----ccHHHHHHHHHhc
Confidence 5665 22 2237888888888888763 3788888777544
No 373
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=52.17 E-value=61 Score=30.05 Aligned_cols=54 Identities=15% Similarity=0.093 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHcCCHH-------HHHHHHHHHhcCC-CCccCHHHHHHHHHHHHHCCCHHH
Q 019734 182 EEAVKLLYQASIAGHVR-------AQYQLALCLHRGR-GVDFNLQEAARWYLRAAEGGYVRA 235 (336)
Q Consensus 182 ~~A~~~~~ka~~~~~~~-------a~~~lg~~~~~g~-g~~~~~~~A~~~~~~a~~~~~~~a 235 (336)
.+|+.|+++|....+|+ |+..||++|...- ...+-|.+|...+.+|-..++...
T Consensus 335 ~~Al~yL~kA~d~ddPetWv~vAEa~I~LGNL~d~eS~eQe~~Y~eAE~iL~kAN~at~GKy 396 (404)
T PF12753_consen 335 KKALEYLKKAQDEDDPETWVDVAEAMIDLGNLYDNESKEQEKAYKEAEKILKKANKATNGKY 396 (404)
T ss_dssp HHHHHHHHHHHHS--TTHHHHHHHHHHHHHHH-SSHHH-HHHHHHHHHHHHHHHHHTT----
T ss_pred HHHHHHHHHhhccCChhHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHHHHhhccccch
Confidence 67777777777665544 4445555554321 123457889999999977665443
No 374
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=52.06 E-value=34 Score=18.35 Aligned_cols=27 Identities=19% Similarity=0.142 Sum_probs=19.8
Q ss_pred HHHHHHhhccCCHHHHHHHHHHHHHcC
Q 019734 273 LEHGLGLFTEGEMMKAVVYLELATRAG 299 (336)
Q Consensus 273 ~~lg~~~~~~~~~~~A~~~~~~A~~~~ 299 (336)
..+-..|.+.|++++|...|.+..+.|
T Consensus 4 n~li~~~~~~~~~~~a~~~~~~M~~~g 30 (35)
T TIGR00756 4 NTLIDGLCKAGRVEEALELFKEMLERG 30 (35)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 444556777888888888888876654
No 375
>PRK14700 recombination factor protein RarA; Provisional
Probab=50.98 E-value=1.1e+02 Score=27.42 Aligned_cols=70 Identities=14% Similarity=0.012 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHhc---CCCHHHHHHHHHHHHHcC-CHHHHHHHHHHH--HH---------HHHHHHHHHHHHcCCHHHHH
Q 019734 137 TLAMVDAGLMYWE---MDKKEAAISLYRQAAVLG-DPAGQFNLGISY--LQ---------EEAVKLLYQASIAGHVRAQY 201 (336)
Q Consensus 137 ~~a~~~lg~~~~~---~~~~~~A~~~~~~a~~~~-~~~a~~~Lg~~~--~~---------~~A~~~~~ka~~~~~~~a~~ 201 (336)
.+.+|++-..+.+ +.|++-|+.|+.+.++.| |+......=.+. .. ..|...++.+-..|.|++..
T Consensus 123 gd~HYd~iSAf~KSiRGSDpDAAlYyLArml~~GEDp~~IaRRLii~AsEDIGlAdP~al~~a~aa~~A~~~iG~PEa~i 202 (300)
T PRK14700 123 GKEFYEQLSAFHKSVRGTDPDAAIFWLSVMLDNGVDPLVIARRMLCIASEDIGNADPQALRVAMDAWNAYEKLGMPEGRL 202 (300)
T ss_pred cchhHHHHHHHHHHhhcCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCChHHHH
Confidence 3444444444322 456667777777766665 555432211111 11 44455555555556666666
Q ss_pred HHHHH
Q 019734 202 QLALC 206 (336)
Q Consensus 202 ~lg~~ 206 (336)
.|+.+
T Consensus 203 ~La~a 207 (300)
T PRK14700 203 VLAQA 207 (300)
T ss_pred HHHHH
Confidence 66655
No 376
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=50.69 E-value=32 Score=23.51 Aligned_cols=18 Identities=17% Similarity=0.137 Sum_probs=12.0
Q ss_pred hccCCHHHHHHHHHHHHH
Q 019734 280 FTEGEMMKAVVYLELATR 297 (336)
Q Consensus 280 ~~~~~~~~A~~~~~~A~~ 297 (336)
.+.|++++|+.+|..|++
T Consensus 19 d~~g~~~eAl~~Y~~a~e 36 (77)
T smart00745 19 DEAGDYEEALELYKKAIE 36 (77)
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 335677777777777765
No 377
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=50.12 E-value=1.1e+02 Score=29.78 Aligned_cols=73 Identities=15% Similarity=0.094 Sum_probs=48.6
Q ss_pred HHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc-------CCHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 019734 91 WNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR-------GSTLAMVDAGLMYWEMDKKEAAISLYRQA 163 (336)
Q Consensus 91 ~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~-------~~~~a~~~lg~~~~~~~~~~~A~~~~~~a 163 (336)
+++...-...++|+-.||.+-.--. ..+-..++..|.+|+.. .|..-+..+|-.|++.+++.+|+..+..|
T Consensus 267 lyd~ghl~~YPmALg~LadLeEi~p--t~~r~~~~~l~~~AI~sa~~~Y~n~HvYPYty~gg~~yR~~~~~eA~~~Wa~a 344 (618)
T PF05053_consen 267 LYDMGHLARYPMALGNLADLEEIDP--TPGRPTPLELFNEAISSARTYYNNHHVYPYTYLGGYYYRHKRYREALRSWAEA 344 (618)
T ss_dssp HHHTTTTTT-HHHHHHHHHHHHHS----TTS--HHHHHHHHHHHHHHHCTT--SHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHhcCchhhCchhhhhhHhHHhhcc--CCCCCCHHHHHHHHHHHHHHHhcCCccccceehhhHHHHHHHHHHHHHHHHHH
Confidence 3444444457899999998866421 23345668889998864 24556677888888999999999999988
Q ss_pred HH
Q 019734 164 AV 165 (336)
Q Consensus 164 ~~ 165 (336)
++
T Consensus 345 a~ 346 (618)
T PF05053_consen 345 AD 346 (618)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 378
>PF13041 PPR_2: PPR repeat family
Probab=49.08 E-value=49 Score=20.14 Aligned_cols=31 Identities=19% Similarity=0.217 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC
Q 019734 137 TLAMVDAGLMYWEMDKKEAAISLYRQAAVLG 167 (336)
Q Consensus 137 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~ 167 (336)
...+..+-..|.+.|++++|..+|++-.+.|
T Consensus 3 ~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g 33 (50)
T PF13041_consen 3 VVTYNTLISGYCKAGKFEEALKLFKEMKKRG 33 (50)
T ss_pred hHHHHHHHHHHHHCcCHHHHHHHHHHHHHcC
Confidence 3455566666777788888888888777664
No 379
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=46.99 E-value=1.5e+02 Score=23.81 Aligned_cols=89 Identities=13% Similarity=0.022 Sum_probs=39.4
Q ss_pred CHHHHHHHHHHH--HHcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHH--HHHHHHHH-HHH
Q 019734 120 NLDKALDSFLKG--AARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQ--EEAVKLLY-QAS 192 (336)
Q Consensus 120 ~~~~A~~~~~~A--~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~--~~A~~~~~-ka~ 192 (336)
+.+.+...+... +.-+.++.-.--|.++...|++.+|+..|+...+. +.+-+.-.++.|+.. +..-..|- .++
T Consensus 25 ~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~Wr~~A~evl 104 (160)
T PF09613_consen 25 DPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPSWRRYADEVL 104 (160)
T ss_pred ChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 444444444421 12244555555555555555555555555554433 334444444444444 22222222 233
Q ss_pred HcC-CHHHHHHHHHHHh
Q 019734 193 IAG-HVRAQYQLALCLH 208 (336)
Q Consensus 193 ~~~-~~~a~~~lg~~~~ 208 (336)
+.+ ++.+...+..+..
T Consensus 105 e~~~d~~a~~Lv~~Ll~ 121 (160)
T PF09613_consen 105 ESGADPDARALVRALLA 121 (160)
T ss_pred hcCCChHHHHHHHHHHH
Confidence 333 5555544444443
No 380
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.67 E-value=3.5e+02 Score=27.96 Aligned_cols=52 Identities=13% Similarity=0.172 Sum_probs=29.6
Q ss_pred cCCChhHHhhhHHHHHHHHHhCC--CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc
Q 019734 75 SFTLPQLRAASLVCKSWNDALRP--LREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR 134 (336)
Q Consensus 75 ~~~~~~~~~a~~~~~~~~~~~~~--~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~ 134 (336)
+++..-|.-|+.++ +.... ......+...|.-+.. ++|+++|..+|-+++..
T Consensus 344 L~kK~ly~~Ai~LA----k~~~~d~d~~~~i~~kYgd~Ly~----Kgdf~~A~~qYI~tI~~ 397 (933)
T KOG2114|consen 344 LFKKNLYKVAINLA----KSQHLDEDTLAEIHRKYGDYLYG----KGDFDEATDQYIETIGF 397 (933)
T ss_pred HHHhhhHHHHHHHH----HhcCCCHHHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHccc
Confidence 34555566664333 32222 1123444445554444 68999999999988764
No 381
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=46.29 E-value=2.7e+02 Score=26.61 Aligned_cols=45 Identities=13% Similarity=0.110 Sum_probs=27.8
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 019734 136 STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAGQFNLGISYLQ 181 (336)
Q Consensus 136 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~ 181 (336)
.++.|+.........+|-++|+.-..+++.- .|...+.|+.+|..
T Consensus 301 ~~evw~dys~Y~~~isd~q~al~tv~rg~~~-spsL~~~lse~yel 345 (660)
T COG5107 301 AEEVWFDYSEYLIGISDKQKALKTVERGIEM-SPSLTMFLSEYYEL 345 (660)
T ss_pred hHHHHHHHHHHHhhccHHHHHHHHHHhcccC-CCchheeHHHHHhh
Confidence 4566666666666667888887777766543 22345556666554
No 382
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=45.79 E-value=65 Score=22.47 Aligned_cols=45 Identities=13% Similarity=0.052 Sum_probs=25.1
Q ss_pred cCCHHHHHHHHHHHHHc--CCHHHHHHH---HHHHhcCCCHHHHHHHHHH
Q 019734 118 RKNLDKALDSFLKGAAR--GSTLAMVDA---GLMYWEMDKKEAAISLYRQ 162 (336)
Q Consensus 118 ~~~~~~A~~~~~~A~~~--~~~~a~~~l---g~~~~~~~~~~~A~~~~~~ 162 (336)
..+.++|+..++++++. ..++-+.-| ..+|.+.|++.+++.+-.+
T Consensus 19 ~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~ 68 (80)
T PF10579_consen 19 QNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQ 68 (80)
T ss_pred cchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666777777777665 233333333 3344555777776666444
No 383
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=45.79 E-value=2.2e+02 Score=30.72 Aligned_cols=28 Identities=14% Similarity=0.127 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 019734 137 TLAMVDAGLMYWEMDKKEAAISLYRQAA 164 (336)
Q Consensus 137 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~ 164 (336)
...+..|+.++...+|.++|+.+-++++
T Consensus 973 ~~~~~~La~l~~~~~d~~~Ai~~~~ka~ 1000 (1236)
T KOG1839|consen 973 ASKYRSLAKLSNRLGDNQEAIAQQRKAC 1000 (1236)
T ss_pred HHHHHHHHHHHhhhcchHHHHHhcccce
Confidence 4556778888888899999998888875
No 384
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=45.13 E-value=79 Score=25.97 Aligned_cols=51 Identities=20% Similarity=0.136 Sum_probs=40.2
Q ss_pred cccHHHHHHHHHHHHHc-CCHHHHHHHHHHhhccCCHHHHHHHHHHHHHcCc
Q 019734 250 PLSHRQARKWMKRAADC-GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGE 300 (336)
Q Consensus 250 ~~~~~~A~~~~~~a~~~-~~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~~ 300 (336)
.......++|.++.+.. -++..+.+++.++...|+.++|..+.+++...-+
T Consensus 124 ~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 124 PEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 33455666777777654 5677888999999999999999999999988765
No 385
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=44.79 E-value=1.2e+02 Score=27.31 Aligned_cols=32 Identities=31% Similarity=0.401 Sum_probs=20.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 019734 120 NLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAA 164 (336)
Q Consensus 120 ~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~ 164 (336)
-+.+|+.+-.+|+..+++ +++++|..+|+.|+
T Consensus 6 ~l~kaI~lv~kA~~eD~a-------------~nY~eA~~lY~~al 37 (439)
T KOG0739|consen 6 FLQKAIDLVKKAIDEDNA-------------KNYEEALRLYQNAL 37 (439)
T ss_pred HHHHHHHHHHHHhhhcch-------------hchHHHHHHHHHHH
Confidence 457888888888876533 45555555555554
No 386
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=44.22 E-value=79 Score=25.96 Aligned_cols=48 Identities=15% Similarity=0.012 Sum_probs=36.8
Q ss_pred CCHHHHHHHHHHHHHc-CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 019734 119 KNLDKALDSFLKGAAR-GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL 166 (336)
Q Consensus 119 ~~~~~A~~~~~~A~~~-~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~ 166 (336)
...+..+++.++.+.. .++..+.+++.++...|+.++|..+.+++...
T Consensus 125 ~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 125 EMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3345555666666654 57888899999999999999999998887644
No 387
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=43.85 E-value=1.1e+02 Score=21.36 Aligned_cols=41 Identities=17% Similarity=0.233 Sum_probs=28.5
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHH
Q 019734 140 MVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYL 180 (336)
Q Consensus 140 ~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~ 180 (336)
...-|.-++...+.++|+..++++++. +.++.+..||.++.
T Consensus 9 ~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~q 51 (80)
T PF10579_consen 9 QIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQ 51 (80)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHH
Confidence 344566667888999999999999876 44555555555543
No 388
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=43.18 E-value=3.1e+02 Score=26.28 Aligned_cols=46 Identities=15% Similarity=0.076 Sum_probs=33.4
Q ss_pred cHHHHHHHHHHHHHc-CCHHHHHHHHHHhhccCCHHHHHHHHHHHHH
Q 019734 252 SHRQARKWMKRAADC-GHGKAQLEHGLGLFTEGEMMKAVVYLELATR 297 (336)
Q Consensus 252 ~~~~A~~~~~~a~~~-~~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~ 297 (336)
++.++.-+-.-..+. -.+.++.-+|.+.+...+|++|+.++...--
T Consensus 477 ey~kc~~ys~WL~~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP~ 523 (549)
T PF07079_consen 477 EYHKCYLYSSWLTKIAPSPQAYRLLGLCLMENKRYQEAWEYLQKLPP 523 (549)
T ss_pred cHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCCC
Confidence 666665544333332 2678889999999999999999999887543
No 389
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=40.76 E-value=4e+02 Score=26.87 Aligned_cols=53 Identities=15% Similarity=0.180 Sum_probs=32.7
Q ss_pred HHHHHhcCCCCcCCHHHHHHHHHHHHHc------CCHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 019734 107 WGKRFKHGRGVRKNLDKALDSFLKGAAR------GSTLAMVDAGLMYWEMDKKEAAISLYRQA 163 (336)
Q Consensus 107 lg~~~~~g~g~~~~~~~A~~~~~~A~~~------~~~~a~~~lg~~~~~~~~~~~A~~~~~~a 163 (336)
++.++.. .+.+.+|.+.|.+.-.. -...-++.++.-+...|+.++-..+.++=
T Consensus 638 lA~~~Ay----~gKF~EAAklFk~~G~enRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKR 696 (1081)
T KOG1538|consen 638 LADVFAY----QGKFHEAAKLFKRSGHENRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKR 696 (1081)
T ss_pred HHHHHHh----hhhHHHHHHHHHHcCchhhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHH
Confidence 5555555 47889999988765322 12234566666676667666666666553
No 390
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=39.28 E-value=5.3e+02 Score=28.07 Aligned_cols=121 Identities=17% Similarity=0.091 Sum_probs=79.5
Q ss_pred HHHHHHHhcCCChhHHhhhH------HHHHHHHH-hCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc-----
Q 019734 67 DVLNKIAASFTLPQLRAASL------VCKSWNDA-LRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR----- 134 (336)
Q Consensus 67 ~~l~~~~~~~~~~~~~~a~~------~~~~~~~~-~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~----- 134 (336)
...++.......+.+.++.. ++...+.. .++ .+..+..|+.++.. .+|.++|+.+-.+|+-.
T Consensus 934 ~~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~--~~~~~~~La~l~~~----~~d~~~Ai~~~~ka~ii~eR~~ 1007 (1236)
T KOG1839|consen 934 DSPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPE--VASKYRSLAKLSNR----LGDNQEAIAQQRKACIISERVL 1007 (1236)
T ss_pred hhhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchh--HHHHHHHHHHHHhh----hcchHHHHHhcccceeeechhc
Confidence 34555556666777776654 22222221 122 45566778888777 68999999999988632
Q ss_pred --CC---HHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-------CCH---HHHHHHHHHHHH----HHHHHHHHHHHH
Q 019734 135 --GS---TLAMVDAGLMYWEMDKKEAAISLYRQAAVL-------GDP---AGQFNLGISYLQ----EEAVKLLYQASI 193 (336)
Q Consensus 135 --~~---~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~-------~~~---~a~~~Lg~~~~~----~~A~~~~~ka~~ 193 (336)
++ ..++.+++...+..+....|...+.++... .+| ....+++.++.. +.|+.+.+.|..
T Consensus 1008 g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a 1085 (1236)
T KOG1839|consen 1008 GKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALA 1085 (1236)
T ss_pred cCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 23 346677777777778888898888888643 122 234677777665 888888888865
No 391
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=38.92 E-value=3.5e+02 Score=25.68 Aligned_cols=92 Identities=8% Similarity=0.057 Sum_probs=63.5
Q ss_pred HHHHHhcCCChhHHhhhHHHHHHHHHhCC--------CCC--------HHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHH
Q 019734 69 LNKIAASFTLPQLRAASLVCKSWNDALRP--------LRE--------AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGA 132 (336)
Q Consensus 69 l~~~~~~~~~~~~~~a~~~~~~~~~~~~~--------~~~--------~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~ 132 (336)
+..+...|..++|..|...++.+++--.+ ... ....-.|..||+. .++++.|+.+-.+.+
T Consensus 180 L~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~----~rkpdlALnh~hrsI 255 (569)
T PF15015_consen 180 LKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLR----MRKPDLALNHSHRSI 255 (569)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhh----cCCCchHHHHHhhhh
Confidence 66777788888888888777766653211 111 2245568888888 578899999999998
Q ss_pred HcCCH--HHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 019734 133 ARGST--LAMVDAGLMYWEMDKKEAAISLYRQAA 164 (336)
Q Consensus 133 ~~~~~--~a~~~lg~~~~~~~~~~~A~~~~~~a~ 164 (336)
.++.. .-+..-+.+.....++.+|...+.-|.
T Consensus 256 ~lnP~~frnHLrqAavfR~LeRy~eAarSamia~ 289 (569)
T PF15015_consen 256 NLNPSYFRNHLRQAAVFRRLERYSEAARSAMIAD 289 (569)
T ss_pred hcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88643 334444666666678888877777664
No 392
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=38.45 E-value=71 Score=27.60 Aligned_cols=46 Identities=15% Similarity=0.271 Sum_probs=33.5
Q ss_pred CHHHHHHHHHHHHHc----C----CHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 019734 120 NLDKALDSFLKGAAR----G----STLAMVDAGLMYWEMDKKEAAISLYRQAAV 165 (336)
Q Consensus 120 ~~~~A~~~~~~A~~~----~----~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~ 165 (336)
.....+.++++|... + -......+|..|+..|++++|+.+|+.++.
T Consensus 153 hs~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~ 206 (247)
T PF11817_consen 153 HSKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAAS 206 (247)
T ss_pred hHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 444556666666654 1 234556899999999999999999999853
No 393
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=38.11 E-value=1.9e+02 Score=24.97 Aligned_cols=56 Identities=16% Similarity=0.082 Sum_probs=41.0
Q ss_pred HHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc----CC----HHHHHHHHHHHhcCCCHHHHHHHHHH
Q 019734 103 VLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR----GS----TLAMVDAGLMYWEMDKKEAAISLYRQ 162 (336)
Q Consensus 103 a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~----~~----~~a~~~lg~~~~~~~~~~~A~~~~~~ 162 (336)
....+|.-|.. .+|+++|+.+|+.++.. |. ......+-.++...||.+..+...-+
T Consensus 180 l~~~~A~ey~~----~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~le 243 (247)
T PF11817_consen 180 LSLEMAEEYFR----LGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLE 243 (247)
T ss_pred HHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 44567888887 58999999999999753 32 34556677777778888877766444
No 394
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=37.23 E-value=56 Score=22.58 Aligned_cols=32 Identities=28% Similarity=0.367 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCHHHHHHHHHHHHH
Q 019734 253 HRQARKWMKRAADCGHGKAQLEHGLGLFTEGEMMKAVVYLELATR 297 (336)
Q Consensus 253 ~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~ 297 (336)
...|+.+.++|++ ....|++++|+.+|..|++
T Consensus 3 ~~~a~~l~~~Ave-------------~D~~g~y~eAl~~Y~~aie 34 (77)
T cd02683 3 ELAAKEVLKRAVE-------------LDQEGRFQEALVCYQEGID 34 (77)
T ss_pred hHHHHHHHHHHHH-------------HHHhccHHHHHHHHHHHHH
Confidence 3455555555543 4446778888888888776
No 395
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=36.32 E-value=3.7e+02 Score=25.35 Aligned_cols=49 Identities=18% Similarity=0.019 Sum_probs=31.3
Q ss_pred cHHHHHHHHHHHHHc----CCHHH--HHHHHHHhhccCCHHHHHHHHHHHHHcCc
Q 019734 252 SHRQARKWMKRAADC----GHGKA--QLEHGLGLFTEGEMMKAVVYLELATRAGE 300 (336)
Q Consensus 252 ~~~~A~~~~~~a~~~----~~~~a--~~~lg~~~~~~~~~~~A~~~~~~A~~~~~ 300 (336)
-++.|.....++.-. ++..+ .|.+|.+..-+++|..|.+++-.|++..+
T Consensus 224 lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkap 278 (493)
T KOG2581|consen 224 LYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAP 278 (493)
T ss_pred HHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCc
Confidence 566666666666521 22233 26677777777788888888888777544
No 396
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=36.24 E-value=72 Score=17.05 Aligned_cols=28 Identities=11% Similarity=-0.022 Sum_probs=19.3
Q ss_pred HHHHHHHhhccCCHHHHHHHHHHHHHcC
Q 019734 272 QLEHGLGLFTEGEMMKAVVYLELATRAG 299 (336)
Q Consensus 272 ~~~lg~~~~~~~~~~~A~~~~~~A~~~~ 299 (336)
+..+-..+.+.|+++.|...|+.-.+.|
T Consensus 4 y~~ll~a~~~~g~~~~a~~~~~~M~~~g 31 (34)
T PF13812_consen 4 YNALLRACAKAGDPDAALQLFDEMKEQG 31 (34)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 4455566777888888888887766544
No 397
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.84 E-value=92 Score=22.87 Aligned_cols=26 Identities=23% Similarity=0.315 Sum_probs=17.0
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHH
Q 019734 136 STLAMVDAGLMYWEMDKKEAAISLYR 161 (336)
Q Consensus 136 ~~~a~~~lg~~~~~~~~~~~A~~~~~ 161 (336)
.|-.+-+||.+|.+.|+.+.|+.-|+
T Consensus 71 pPG~HAhLGlLys~~G~~e~a~~eFe 96 (121)
T COG4259 71 PPGYHAHLGLLYSNSGKDEQAVREFE 96 (121)
T ss_pred CCcHHHHHHHHHhhcCChHHHHHHHH
Confidence 35566667777776777776666665
No 398
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=35.16 E-value=84 Score=24.64 Aligned_cols=30 Identities=17% Similarity=0.047 Sum_probs=13.1
Q ss_pred HHHHHHHhcCCChhHHhhhHHHHHHHHHhC
Q 019734 67 DVLNKIAASFTLPQLRAASLVCKSWNDALR 96 (336)
Q Consensus 67 ~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~ 96 (336)
.++..+...+..|+++-|..+...+....+
T Consensus 72 ~vl~~A~~~~~~gd~~wA~~L~d~l~~adp 101 (141)
T PF14863_consen 72 KVLERAQAALAAGDYQWAAELLDHLVFADP 101 (141)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence 344444444455555555444444444433
No 399
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.90 E-value=1.4e+02 Score=30.84 Aligned_cols=66 Identities=20% Similarity=0.244 Sum_probs=37.1
Q ss_pred CCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHH
Q 019734 98 LREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAGQF 173 (336)
Q Consensus 98 ~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~ 173 (336)
.++++.|..||..-.. +++..-|..+|++- ..+..|..+|.-.|+.++-.+.-..|-..+|...++
T Consensus 669 ldd~d~w~rLge~Al~----qgn~~IaEm~yQ~~------knfekLsfLYliTgn~eKL~Km~~iae~r~D~~~~~ 734 (1202)
T KOG0292|consen 669 LDDKDVWERLGEEALR----QGNHQIAEMCYQRT------KNFEKLSFLYLITGNLEKLSKMMKIAEIRNDATGQF 734 (1202)
T ss_pred cCcHHHHHHHHHHHHH----hcchHHHHHHHHHh------hhhhheeEEEEEeCCHHHHHHHHHHHHhhhhhHHHH
Confidence 3466677777766555 46666666666653 223345555656666666555555554444544443
No 400
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.24 E-value=1.7e+02 Score=21.50 Aligned_cols=36 Identities=17% Similarity=0.006 Sum_probs=28.6
Q ss_pred CHHHHHHHHHHhhccCCHHHHHHHHHHHHHcCcHHH
Q 019734 268 HGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAA 303 (336)
Q Consensus 268 ~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~~~~a 303 (336)
.|-.+-.||.+|.+.|+.+.|+.-|+.--..-++.+
T Consensus 71 pPG~HAhLGlLys~~G~~e~a~~eFetEKalFPES~ 106 (121)
T COG4259 71 PPGYHAHLGLLYSNSGKDEQAVREFETEKALFPESG 106 (121)
T ss_pred CCcHHHHHHHHHhhcCChHHHHHHHHHhhhhCccch
Confidence 466778999999999999999999987665544433
No 401
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=34.05 E-value=4.8e+02 Score=25.93 Aligned_cols=59 Identities=15% Similarity=-0.091 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH----c---CCH-H---HHHHHHHHhhccCCHHHHHHHHHHHHH
Q 019734 234 RAMYNTSLCYSFGEGLPLSHRQARKWMKRAAD----C---GHG-K---AQLEHGLGLFTEGEMMKAVVYLELATR 297 (336)
Q Consensus 234 ~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~----~---~~~-~---a~~~lg~~~~~~~~~~~A~~~~~~A~~ 297 (336)
-+...++..+..+ +..+......++.. . ++. . +..-+...+...|+.++|....++...
T Consensus 536 ~~L~lm~~~lf~~-----~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~~ 605 (608)
T PF10345_consen 536 ILLNLMGHRLFEG-----DVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLDR 605 (608)
T ss_pred HHHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 3455666666522 55555444444433 2 111 1 122344456668899998888777654
No 402
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=33.96 E-value=3.7e+02 Score=24.54 Aligned_cols=97 Identities=13% Similarity=0.047 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc----CC----HHHHHHHHHHhhccCCHHHHHHHHHHHHHcC-cHHH
Q 019734 233 VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC----GH----GKAQLEHGLGLFTEGEMMKAVVYLELATRAG-ETAA 303 (336)
Q Consensus 233 ~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~----~~----~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~-~~~a 303 (336)
.+++.+.+..|.+-. |.+.|.+|+++..+. |. .-....||..|.+..=..+.+.-.+..++.| +.+-
T Consensus 104 ~ea~~~kaeYycqig----Dkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeR 179 (393)
T KOG0687|consen 104 REAMLRKAEYYCQIG----DKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWER 179 (393)
T ss_pred HHHHHHHHHHHHHhc----cHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhh
Confidence 567888888886533 999999999888663 33 2234688988877654444444444445443 3433
Q ss_pred HHHHHH--HHhhcChhcHHHHHHHHHHhhcCC
Q 019734 304 DHVKNV--ILQQLSATSRDRAMLVVDSWRAMP 333 (336)
Q Consensus 304 ~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~ 333 (336)
...+.. ....++-.++..|-.++-....+.
T Consensus 180 rNRlKvY~Gly~msvR~Fk~Aa~Lfld~vsTF 211 (393)
T KOG0687|consen 180 RNRLKVYQGLYCMSVRNFKEAADLFLDSVSTF 211 (393)
T ss_pred hhhHHHHHHHHHHHHHhHHHHHHHHHHHcccc
Confidence 333221 122335556666666655554443
No 403
>PF08771 Rapamycin_bind: Rapamycin binding domain; InterPro: IPR009076 Rapamycin and FK506 are potent immunosuppressive agents that bind to the FK506-binding protein (FKBP12), inhibiting its peptidyl-prolyl isomerase activity. The rapamycin-FKBP12 complex can then bind to and inhibit the FKBP12-rapamycin-associated protein (FRAP) in humans and RAFT1 in rats, causing cell-cycle arrest []. The FK506-FKBP12 complex cannot bind FRAP, but can bind to and inhibit calcineurin. Rapamycin is able to bind to two proteins, FKBP12 and FRAP, by simultaneously occupying two hydrophobic binding pockets, thereby linking these two proteins together to form a dimer []. The structure of the FKBP12-rapamycin-binding domain of FRAP consists of a core bundle of four helices arranged up-and-down in a left-handed twist. FRAP has been shown to interact in vitro with CLIP-170, a protein involved in microtubule organisation and function []. FRAP is thought to act as a kinase to phosphorylate CLIP-170, thereby regulating its binding to microtubules. FRAP is also thought to cooperate with p85/p110 phosphatidylinositol 3-kinase (PI3K) to induce the activation of the serine/threonine kinase p70 S6 kinase (p70S6K), which in turn phosphorylates the 40S ribosomal protein S6, thereby altering the translation of ribosomal proteins and translation elongation factors [].; GO: 0016772 transferase activity, transferring phosphorus-containing groups; PDB: 2NPU_A 2RSE_B 4FAP_B 1AUE_A 2GAQ_A 1FAP_B 2FAP_B 3FAP_B 1NSG_B.
Probab=33.85 E-value=1.4e+02 Score=21.72 Aligned_cols=63 Identities=11% Similarity=0.123 Sum_probs=30.7
Q ss_pred HHHHHhcC-CChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcCCH
Q 019734 69 LNKIAASF-TLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGST 137 (336)
Q Consensus 69 l~~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~~~~ 137 (336)
|..|..++ ..++.+........+.+.... .|........+-..| .++.+|..++++-...++.
T Consensus 17 Le~As~~y~~~~n~~~m~~~L~pLh~~l~k--~PeT~~E~~F~~~fg----~~L~~A~~~~~~y~~t~~~ 80 (100)
T PF08771_consen 17 LEEASRLYFGENNVEKMFKILEPLHEMLEK--GPETLREVSFAQAFG----RDLQEAREWLKRYERTGDE 80 (100)
T ss_dssp HHHHHHHHHTTT-HHHHHHHHHHHHHHHHH--S-SSHHHHHHHHHHH----HHHHHHHHHHHHHHHH--H
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHH----HHHHHHHHHHHHHhhhCCH
Confidence 44444443 666666666655555555433 222333334444443 4666666666666554443
No 404
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.11 E-value=5.1e+02 Score=25.88 Aligned_cols=88 Identities=14% Similarity=0.103 Sum_probs=55.5
Q ss_pred CCCCChHHHHHHHHhcCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcCCHHH
Q 019734 60 DFASLPFDVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLA 139 (336)
Q Consensus 60 ~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~~~~~a 139 (336)
.+..+|.+...+++..+....+.+. .++- ..+++--+.|++- .++++.|... |.+.++..=
T Consensus 608 vLp~I~k~~rt~va~Fle~~g~~e~------AL~~---s~D~d~rFelal~-------lgrl~iA~~l---a~e~~s~~K 668 (794)
T KOG0276|consen 608 VLPTIPKEIRTKVAHFLESQGMKEQ------ALEL---STDPDQRFELALK-------LGRLDIAFDL---AVEANSEVK 668 (794)
T ss_pred ccccCchhhhhhHHhHhhhccchHh------hhhc---CCChhhhhhhhhh-------cCcHHHHHHH---HHhhcchHH
Confidence 3445565566666555544333321 2222 2345555656554 2567777544 444577888
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 019734 140 MVDAGLMYWEMDKKEAAISLYRQAAVL 166 (336)
Q Consensus 140 ~~~lg~~~~~~~~~~~A~~~~~~a~~~ 166 (336)
|-.||......+++..|.++|.+|-+.
T Consensus 669 w~~Lg~~al~~~~l~lA~EC~~~a~d~ 695 (794)
T KOG0276|consen 669 WRQLGDAALSAGELPLASECFLRARDL 695 (794)
T ss_pred HHHHHHHHhhcccchhHHHHHHhhcch
Confidence 889999999999999999999988643
No 405
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=32.57 E-value=2.6e+02 Score=22.44 Aligned_cols=101 Identities=15% Similarity=0.064 Sum_probs=60.8
Q ss_pred HHHHHhcCCChhHHhhhHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHH
Q 019734 69 LNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLM 146 (336)
Q Consensus 69 l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~ 146 (336)
+.-.......++...+..+....--.-|. .+.....-|.++.. .+++.+|+..|+..... +.+.+.-.++.+
T Consensus 14 ie~~~~al~~~~~~D~e~lL~ALrvLRP~--~~e~~~~~~~l~i~----r~~w~dA~rlLr~l~~~~~~~p~~kALlA~C 87 (160)
T PF09613_consen 14 IEVLSVALRLGDPDDAEALLDALRVLRPE--FPELDLFDGWLHIV----RGDWDDALRLLRELEERAPGFPYAKALLALC 87 (160)
T ss_pred HHHHHHHHccCChHHHHHHHHHHHHhCCC--chHHHHHHHHHHHH----hCCHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 44444445667777775555544444444 66666667777777 57888888888876655 456667777777
Q ss_pred HhcCCCHHHHHHHHHHHHHcC-CHHHHHHHH
Q 019734 147 YWEMDKKEAAISLYRQAAVLG-DPAGQFNLG 176 (336)
Q Consensus 147 ~~~~~~~~~A~~~~~~a~~~~-~~~a~~~Lg 176 (336)
++..+|++-=. +-.++++.+ ++.+.....
T Consensus 88 L~~~~D~~Wr~-~A~evle~~~d~~a~~Lv~ 117 (160)
T PF09613_consen 88 LYALGDPSWRR-YADEVLESGADPDARALVR 117 (160)
T ss_pred HHHcCChHHHH-HHHHHHhcCCChHHHHHHH
Confidence 77777765322 223344443 555554433
No 406
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.46 E-value=6.1e+02 Score=26.33 Aligned_cols=30 Identities=10% Similarity=0.031 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 019734 137 TLAMVDAGLMYWEMDKKEAAISLYRQAAVL 166 (336)
Q Consensus 137 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~ 166 (336)
.+.+...|..++..||+++|..+|-+.+..
T Consensus 368 ~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~ 397 (933)
T KOG2114|consen 368 AEIHRKYGDYLYGKGDFDEATDQYIETIGF 397 (933)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHccc
Confidence 345667888889999999999999999865
No 407
>PF12002 MgsA_C: MgsA AAA+ ATPase C terminal; InterPro: IPR021886 The MgsA protein possesses DNA-dependent ATPase and ssDNA annealing activities []. MgsA contributes to the recovery of stalled replication forks and therefore prevents genomic instability caused by aberrant DNA replication []. Additionally, MgsA may play a role in chromosomal segregation []. This is consistent with a report that MgsA co-localises with the replisome and affects chromosome segregation []. This domain represents the C-terminal region of MgsA. ; PDB: 2R9G_A 2QW6_D 3CTD_B 3PVS_B 3BGE_A.
Probab=31.30 E-value=2.1e+02 Score=23.26 Aligned_cols=16 Identities=19% Similarity=0.146 Sum_probs=7.5
Q ss_pred CHHHHHHHHHHHHHcC
Q 019734 152 KKEAAISLYRQAAVLG 167 (336)
Q Consensus 152 ~~~~A~~~~~~a~~~~ 167 (336)
|.+-|+.|+.+.++.|
T Consensus 3 D~dAAlywlarml~~G 18 (168)
T PF12002_consen 3 DPDAALYWLARMLEGG 18 (168)
T ss_dssp -HHHHHHHHHHHHHTT
T ss_pred ChHHHHHHHHHHHHcC
Confidence 4445555555555444
No 408
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=31.28 E-value=2.7e+02 Score=22.16 Aligned_cols=50 Identities=14% Similarity=-0.025 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHhcCCCHH
Q 019734 101 AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKE 154 (336)
Q Consensus 101 ~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~ 154 (336)
+.....-|.++.. .+++.+|+..|+...+.+ .+.+.-.++.++.-.||.+
T Consensus 44 ~e~d~~dg~l~i~----rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp~ 95 (153)
T TIGR02561 44 KELDMFDGWLLIA----RGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDAE 95 (153)
T ss_pred cccchhHHHHHHH----cCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCChH
Confidence 3333444444444 355555555555555442 2444445555555555443
No 409
>PRK10941 hypothetical protein; Provisional
Probab=30.99 E-value=1.4e+02 Score=26.29 Aligned_cols=67 Identities=7% Similarity=-0.092 Sum_probs=51.9
Q ss_pred HHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhccCCHHHHHHHHHHHHHcC--cHHHHHH
Q 019734 236 MYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAG--ETAADHV 306 (336)
Q Consensus 236 ~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~~--~~~a~~~ 306 (336)
..+|-.+|.. .+++++|+.+.++.+.. +++.-...-|.+|.+.|.+..|..-++.-++.. .+.+...
T Consensus 184 l~nLK~~~~~----~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~i 254 (269)
T PRK10941 184 LDTLKAALME----EKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMI 254 (269)
T ss_pred HHHHHHHHHH----cCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHH
Confidence 4566666655 44999999999999875 556666789999999999999999999998864 4444433
No 410
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=29.31 E-value=93 Score=16.17 Aligned_cols=15 Identities=20% Similarity=0.144 Sum_probs=7.4
Q ss_pred CHHHHHHHHHHHHHc
Q 019734 284 EMMKAVVYLELATRA 298 (336)
Q Consensus 284 ~~~~A~~~~~~A~~~ 298 (336)
+.+++...|++++..
T Consensus 2 ~~~~~r~i~e~~l~~ 16 (33)
T smart00386 2 DIERARKIYERALEK 16 (33)
T ss_pred cHHHHHHHHHHHHHH
Confidence 344455555555543
No 411
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=27.23 E-value=4.8e+02 Score=23.76 Aligned_cols=71 Identities=20% Similarity=0.204 Sum_probs=39.7
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHc--C----C----HHHHHHHHHHHHH----HHHHHHHHHHH----HcCCHHH
Q 019734 138 LAMVDAGLMYWEMDKKEAAISLYRQAAVL--G----D----PAGQFNLGISYLQ----EEAVKLLYQAS----IAGHVRA 199 (336)
Q Consensus 138 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~----~----~~a~~~Lg~~~~~----~~A~~~~~ka~----~~~~~~a 199 (336)
.....|+.+|...+++..|...+.- +.. | + ..-+..+|.+|+. .+|..+..++. +..+..-
T Consensus 104 ~irl~LAsiYE~Eq~~~~aaq~L~~-I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~~Ne~L 182 (399)
T KOG1497|consen 104 SIRLHLASIYEKEQNWRDAAQVLVG-IPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAESSNEQL 182 (399)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHhc-cCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcccCHHH
Confidence 3567889999888888887766532 211 1 1 2234556666665 45555555541 2344555
Q ss_pred HHHHHHHHhc
Q 019734 200 QYQLALCLHR 209 (336)
Q Consensus 200 ~~~lg~~~~~ 209 (336)
+..+-.||.+
T Consensus 183 qie~kvc~AR 192 (399)
T KOG1497|consen 183 QIEYKVCYAR 192 (399)
T ss_pred HHHHHHHHHH
Confidence 5555555543
No 412
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=26.14 E-value=3.2e+02 Score=21.37 Aligned_cols=47 Identities=9% Similarity=-0.039 Sum_probs=35.6
Q ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHH--HcCCHHHHHHHHHHHHH
Q 019734 135 GSTLAMVDAGLMYWEMDKKEAAISLYRQAA--VLGDPAGQFNLGISYLQ 181 (336)
Q Consensus 135 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~--~~~~~~a~~~Lg~~~~~ 181 (336)
|..+.....+.-.+..||+.-|.++...++ ++++.++....+.+|..
T Consensus 68 GG~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~ 116 (141)
T PF14863_consen 68 GGADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQ 116 (141)
T ss_dssp TCHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Confidence 788888888888888999999999988875 55778887777777764
No 413
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.14 E-value=4.7e+02 Score=26.12 Aligned_cols=33 Identities=24% Similarity=0.057 Sum_probs=18.1
Q ss_pred HHcCCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHH
Q 019734 192 SIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAA 228 (336)
Q Consensus 192 ~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~ 228 (336)
.+.+...-|-.||..... .+++..|.+++.+|-
T Consensus 661 ~e~~s~~Kw~~Lg~~al~----~~~l~lA~EC~~~a~ 693 (794)
T KOG0276|consen 661 VEANSEVKWRQLGDAALS----AGELPLASECFLRAR 693 (794)
T ss_pred HhhcchHHHHHHHHHHhh----cccchhHHHHHHhhc
Confidence 334455555556655555 455666666666553
No 414
>KOG2709 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.48 E-value=74 Score=29.70 Aligned_cols=27 Identities=22% Similarity=0.215 Sum_probs=23.3
Q ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHH
Q 019734 271 AQLEHGLGLFTEGEMMKAVVYLELATR 297 (336)
Q Consensus 271 a~~~lg~~~~~~~~~~~A~~~~~~A~~ 297 (336)
+..++|.+|.+.+++++|+.+|+++++
T Consensus 24 ~~V~~gl~~dE~~~~e~a~~~Ye~gl~ 50 (560)
T KOG2709|consen 24 ASVEQGLCYDEVNDWENALAMYEKGLN 50 (560)
T ss_pred HHHHhhcchhhhcCHHHHHHHHHHHHH
Confidence 457888899999999999999999876
No 415
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=25.03 E-value=3.1e+02 Score=25.82 Aligned_cols=86 Identities=19% Similarity=0.147 Sum_probs=50.3
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHc----C-CHHHHHHHHHH--HHH---------HHHHHHH---HHHHHcCCHH
Q 019734 138 LAMVDAGLMYWEMDKKEAAISLYRQAAVL----G-DPAGQFNLGIS--YLQ---------EEAVKLL---YQASIAGHVR 198 (336)
Q Consensus 138 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----~-~~~a~~~Lg~~--~~~---------~~A~~~~---~ka~~~~~~~ 198 (336)
.++..+|.-|...|+++.|++.|-++-+- + ....+.++=.+ |.+ .+|..+- ..+...-.+.
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k 230 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK 230 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Confidence 57889999999999999999999995321 1 22333332221 111 6666653 3332222333
Q ss_pred HHHHHHHHHhcCCCCccCHHHHHHHHHHH
Q 019734 199 AQYQLALCLHRGRGVDFNLQEAARWYLRA 227 (336)
Q Consensus 199 a~~~lg~~~~~g~g~~~~~~~A~~~~~~a 227 (336)
....-|..... .++|..|..+|-.+
T Consensus 231 l~C~agLa~L~----lkkyk~aa~~fL~~ 255 (466)
T KOG0686|consen 231 LKCAAGLANLL----LKKYKSAAKYFLLA 255 (466)
T ss_pred hHHHHHHHHHH----HHHHHHHHHHHHhC
Confidence 44444444433 46788888877765
No 416
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=24.02 E-value=3.4e+02 Score=20.91 Aligned_cols=72 Identities=15% Similarity=0.023 Sum_probs=41.2
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHcCCHH---HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCccC
Q 019734 140 MVDAGLMYWEMDKKEAAISLYRQAAVLGDPA---GQFNLGISYLQEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFN 216 (336)
Q Consensus 140 ~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~---a~~~Lg~~~~~~~A~~~~~ka~~~~~~~a~~~lg~~~~~g~g~~~~ 216 (336)
+..+|...+..+++-.++-.|++|+....-. -...+-..+ .-......||+.++.. .+|
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll--------------~i~VisCHNLA~FWR~----~gd 65 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLL--------------TISVISCHNLADFWRS----QGD 65 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHH--------------HHHHHHHhhHHHHHHH----cCC
Confidence 3456777777788888888888876320000 000000000 0123467788888877 677
Q ss_pred HHHHHHHHHHHHH
Q 019734 217 LQEAARWYLRAAE 229 (336)
Q Consensus 217 ~~~A~~~~~~a~~ 229 (336)
.+-..+|++-|-+
T Consensus 66 ~~yELkYLqlASE 78 (140)
T PF10952_consen 66 SDYELKYLQLASE 78 (140)
T ss_pred hHHHHHHHHHHHH
Confidence 7777777777643
No 417
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=23.94 E-value=1.1e+02 Score=28.65 Aligned_cols=66 Identities=14% Similarity=0.042 Sum_probs=46.4
Q ss_pred CCHHHHHHHHHHHhcCC----CCcCCHHHHHHHHHHHH------Hc----CCHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 019734 99 REAMVLLRWGKRFKHGR----GVRKNLDKALDSFLKGA------AR----GSTLAMVDAGLMYWEMDKKEAAISLYRQAA 164 (336)
Q Consensus 99 ~~~~a~~~lg~~~~~g~----g~~~~~~~A~~~~~~A~------~~----~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~ 164 (336)
|....+..||....-|. -..||+..|++.++-.- -. -+...+|.+|..|...+++.+|+..|...+
T Consensus 112 g~~~l~~~LGYFSligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 112 GSSPLYKMLGYFSLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred ccccHHHHhhHHHHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666665444433 23689999998876321 00 144567899999999999999999998876
No 418
>PF14852 Fis1_TPR_N: Fis1 N-terminal tetratricopeptide repeat; PDB: 1IYG_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A 1PC2_A 1NZN_A.
Probab=22.92 E-value=1e+02 Score=17.68 Aligned_cols=8 Identities=13% Similarity=0.185 Sum_probs=3.2
Q ss_pred HHHHHHHH
Q 019734 236 MYNTSLCY 243 (336)
Q Consensus 236 ~~~lg~~~ 243 (336)
.++++.++
T Consensus 4 ~FnyAw~L 11 (35)
T PF14852_consen 4 QFNYAWGL 11 (35)
T ss_dssp HHHHHHHH
T ss_pred hhHHHHHH
Confidence 33444443
No 419
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=22.36 E-value=4.6e+02 Score=23.57 Aligned_cols=64 Identities=16% Similarity=0.096 Sum_probs=45.7
Q ss_pred CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc----CC-HH---HHHHHHHHhhccCCHHHHHHHHHHHHHcC
Q 019734 232 YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC----GH-GK---AQLEHGLGLFTEGEMMKAVVYLELATRAG 299 (336)
Q Consensus 232 ~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~----~~-~~---a~~~lg~~~~~~~~~~~A~~~~~~A~~~~ 299 (336)
-.+++.++|..|.+-. |.+.+.+|.++.... |- .+ ....||.+|-.+.-.++.++...-.++.|
T Consensus 114 ~~ea~~n~aeyY~qi~----D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkG 185 (412)
T COG5187 114 GSEADRNIAEYYCQIM----DIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKG 185 (412)
T ss_pred HHHHHHHHHHHHHHHh----hhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhC
Confidence 4678999999997644 888999998887763 21 22 23678888877776667776666666654
No 420
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=22.29 E-value=6.2e+02 Score=23.31 Aligned_cols=129 Identities=17% Similarity=0.087 Sum_probs=74.2
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHH-
Q 019734 151 DKKEAAISLYRQAAVLGDPAGQFNLGISYLQEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAE- 229 (336)
Q Consensus 151 ~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~~~A~~~~~ka~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~- 229 (336)
..+.++...|..+++..|++.+..+= ....-+.+++..++.++.. .+|...|.++.++|+-
T Consensus 8 ~~Y~~~q~~F~~~v~~~Dp~~l~~ll--------------~~~PyHidtLlqls~v~~~----~gd~~~A~~lleRALf~ 69 (360)
T PF04910_consen 8 KAYQEAQEQFYAAVQSHDPNALINLL--------------QKNPYHIDTLLQLSEVYRQ----QGDHAQANDLLERALFA 69 (360)
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHH--------------HHCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHH
Confidence 34566666677777666776665431 0112366777777777776 6777777777776631
Q ss_pred ------C-----------C---------CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcC---CH-HHHHHHHHHh
Q 019734 230 ------G-----------G---------YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCG---HG-KAQLEHGLGL 279 (336)
Q Consensus 230 ------~-----------~---------~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~~a~~~~---~~-~a~~~lg~~~ 279 (336)
. | .-...+.....|....+-.+-+..|.+|.+..+..+ +| .+.+.+-...
T Consensus 70 ~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~A 149 (360)
T PF04910_consen 70 FERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYA 149 (360)
T ss_pred HHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHH
Confidence 0 0 011122222222222122338999999999988753 33 3346666666
Q ss_pred hccCCHHHHHHHHHHHHH
Q 019734 280 FTEGEMMKAVVYLELATR 297 (336)
Q Consensus 280 ~~~~~~~~A~~~~~~A~~ 297 (336)
.+.++++=-+..++....
T Consensus 150 Lrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 150 LRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HhcCCHHHHHHHHHhHhh
Confidence 667787766766666544
No 421
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=22.16 E-value=5.7e+02 Score=23.22 Aligned_cols=14 Identities=43% Similarity=0.446 Sum_probs=7.0
Q ss_pred cCHHHHHHHHHHHH
Q 019734 215 FNLQEAARWYLRAA 228 (336)
Q Consensus 215 ~~~~~A~~~~~~a~ 228 (336)
++|.+|..+|+.++
T Consensus 24 ~nY~eA~~lY~~al 37 (439)
T KOG0739|consen 24 KNYEEALRLYQNAL 37 (439)
T ss_pred hchHHHHHHHHHHH
Confidence 45555555555443
No 422
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=21.89 E-value=4.2e+02 Score=28.63 Aligned_cols=74 Identities=15% Similarity=0.192 Sum_probs=49.0
Q ss_pred CHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHhcC------C----CHHHHHHHHHHHHHc--
Q 019734 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR-GSTLAMVDAGLMYWEM------D----KKEAAISLYRQAAVL-- 166 (336)
Q Consensus 100 ~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~A~~~-~~~~a~~~lg~~~~~~------~----~~~~A~~~~~~a~~~-- 166 (336)
.+..-+.+|.+|.. .+..-+|+.+|.+|... +...++..+-....-. | ....|.+||.+++..
T Consensus 919 k~v~rfmlg~~yl~----tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle 994 (1480)
T KOG4521|consen 919 KPVIRFMLGIAYLG----TGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLE 994 (1480)
T ss_pred HHHHHHhhheeeec----CCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHH
Confidence 44566778888877 68999999999999875 5566766665543221 2 244578899888743
Q ss_pred --CCHHHHHHHHH
Q 019734 167 --GDPAGQFNLGI 177 (336)
Q Consensus 167 --~~~~a~~~Lg~ 177 (336)
+.++....++.
T Consensus 995 ~hn~~E~vcQlA~ 1007 (1480)
T KOG4521|consen 995 EHNHAEEVCQLAV 1007 (1480)
T ss_pred HhccHHHHHHHHH
Confidence 45554444433
No 423
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=21.81 E-value=7e+02 Score=23.76 Aligned_cols=34 Identities=15% Similarity=0.074 Sum_probs=27.0
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHH
Q 019734 139 AMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAGQ 172 (336)
Q Consensus 139 a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~ 172 (336)
....|..||...++++-|+....+.+..+...-.
T Consensus 230 Ietklv~CYL~~rkpdlALnh~hrsI~lnP~~fr 263 (569)
T PF15015_consen 230 IETKLVTCYLRMRKPDLALNHSHRSINLNPSYFR 263 (569)
T ss_pred HHHHHHHhhhhcCCCchHHHHHhhhhhcCcchhh
Confidence 3567899999999999999999998877544333
No 424
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=21.73 E-value=5.7e+02 Score=22.68 Aligned_cols=74 Identities=15% Similarity=-0.073 Sum_probs=49.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHH
Q 019734 184 AVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMK 261 (336)
Q Consensus 184 A~~~~~ka~~~~~~~a~~~lg~~~~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~g~~~~~~~A~~~~~ 261 (336)
=+.-..+..+.....++..++..+.. .++++.++..+++.++. -+..++..+=..|.... +...|+..|+
T Consensus 140 WV~~~R~~l~e~~~~~l~~lae~~~~----~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g----~~~~ai~~y~ 211 (280)
T COG3629 140 WVLEQRRALEELFIKALTKLAEALIA----CGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNG----RQSAAIRAYR 211 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh----cccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcC----CchHHHHHHH
Confidence 33334445555667777777777776 67788888888877554 46666666666665432 7778888887
Q ss_pred HHHH
Q 019734 262 RAAD 265 (336)
Q Consensus 262 ~a~~ 265 (336)
+...
T Consensus 212 ~l~~ 215 (280)
T COG3629 212 QLKK 215 (280)
T ss_pred HHHH
Confidence 7655
No 425
>TIGR00823 EIIA-LAC phosphotransferase system enzyme II, lactose-specific, factor III. operon. While the Lac permeases consist of two polypeptide chains (IIA and IICB), the Chb permease of E. coli consists of three (IIA, IIB and IIC). In B. subtilis, a PTS permease similar to the Chb permease of E. coli is believed to transport lichenan (a b-1,3;1,4 glucan) degradation products, oligosaccharides of 2-4 glucose units. This model is specific for the IIA subunit of the Lac PTS family.
Probab=21.29 E-value=2.5e+02 Score=20.50 Aligned_cols=33 Identities=21% Similarity=0.059 Sum_probs=22.5
Q ss_pred HHcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 019734 132 AARGSTLAMVDAGLMYWEMDKKEAAISLYRQAA 164 (336)
Q Consensus 132 ~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~ 164 (336)
+.-|++.+++.=+.-..+.||+++|...+.+|-
T Consensus 12 ~~aG~Ars~~~eAl~~a~~gdfe~A~~~l~eA~ 44 (99)
T TIGR00823 12 AYAGDARSKALEALKAAKAGDFAKARALVEQAG 44 (99)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 334666666666666677788888877776654
No 426
>cd00215 PTS_IIA_lac PTS_IIA, PTS system, lactose/cellobiose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. This family of proteins normally function as a homotrimer, stabilized by a centrally located metal ion. Separation into subunits is thought to occur after phosphorylation.
Probab=20.62 E-value=2.6e+02 Score=20.32 Aligned_cols=32 Identities=16% Similarity=0.025 Sum_probs=22.2
Q ss_pred HcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 019734 133 ARGSTLAMVDAGLMYWEMDKKEAAISLYRQAA 164 (336)
Q Consensus 133 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~ 164 (336)
..|++.+++.=+.-..+.||+++|...+++|-
T Consensus 11 ~aG~Ars~~~eAl~~a~~g~fe~A~~~l~ea~ 42 (97)
T cd00215 11 HAGNARSKALEALKAAKEGDFAEAEELLEEAN 42 (97)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34666666666666677788888887777664
No 427
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=20.61 E-value=5.5e+02 Score=22.04 Aligned_cols=29 Identities=17% Similarity=0.078 Sum_probs=22.0
Q ss_pred HHHHHHHh---------hccCCHHHHHHHHHHHHHcCc
Q 019734 272 QLEHGLGL---------FTEGEMMKAVVYLELATRAGE 300 (336)
Q Consensus 272 ~~~lg~~~---------~~~~~~~~A~~~~~~A~~~~~ 300 (336)
+-.+|..+ ...++...|..++++|+..++
T Consensus 172 ~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~ 209 (230)
T PHA02537 172 YKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLND 209 (230)
T ss_pred HHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCC
Confidence 35667766 355688999999999998754
No 428
>PRK11619 lytic murein transglycosylase; Provisional
Probab=20.52 E-value=8.9e+02 Score=24.44 Aligned_cols=47 Identities=15% Similarity=0.148 Sum_probs=35.5
Q ss_pred cHHHHHHHHHHHHH--cCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHc
Q 019734 252 SHRQARKWMKRAAD--CGHGKAQLEHGLGLFTEGEMMKAVVYLELATRA 298 (336)
Q Consensus 252 ~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~~~~~~~A~~~~~~A~~~ 298 (336)
|.+....|+..... ......+|++|..+...|+.++|..+|+++...
T Consensus 327 dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~ 375 (644)
T PRK11619 327 DRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQ 375 (644)
T ss_pred CHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcC
Confidence 66666666666433 245667899999988899999999999998653
No 429
>COG1447 CelC Phosphotransferase system cellobiose-specific component IIA [Carbohydrate transport and metabolism]
Probab=20.05 E-value=3.3e+02 Score=20.17 Aligned_cols=34 Identities=18% Similarity=0.019 Sum_probs=24.0
Q ss_pred HHHcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 019734 131 GAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAA 164 (336)
Q Consensus 131 A~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~ 164 (336)
.+..|++.+.+.-|.-+.+.|++++|...+.+|-
T Consensus 13 I~~aG~ArS~~~eAl~~Ak~g~f~~A~~~i~eA~ 46 (105)
T COG1447 13 ILHAGNARSKAYEALKAAKEGDFEEAEELIQEAN 46 (105)
T ss_pred HHHcccHhHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3344677777777777777888888887777664
Done!