Query 019735
Match_columns 336
No_of_seqs 411 out of 2908
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 06:20:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019735.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019735hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2crr_A Stromal membrane-associ 100.0 3.4E-45 1.2E-49 298.2 8.5 131 10-144 7-137 (141)
2 2iqj_A Stromal membrane-associ 100.0 2.6E-45 9.1E-50 296.3 5.6 125 13-141 8-132 (134)
3 2olm_A Nucleoporin-like protei 100.0 2.2E-42 7.6E-47 281.3 6.6 123 15-140 8-131 (140)
4 3lju_X ARF-GAP with dual PH do 100.0 6.2E-38 2.1E-42 299.7 6.3 124 14-139 16-139 (386)
5 3jue_A Arfgap with coiled-coil 100.0 1.2E-37 3.9E-42 296.8 7.7 123 16-139 29-152 (368)
6 2owa_A Arfgap-like finger doma 100.0 1E-36 3.5E-41 246.5 6.2 109 20-133 24-132 (138)
7 2crw_A ARF GAP 3, ADP-ribosyla 100.0 6.9E-37 2.4E-41 250.0 2.9 90 17-107 14-104 (149)
8 3dwd_A ADP-ribosylation factor 100.0 1E-35 3.6E-40 240.4 7.6 88 17-105 23-110 (147)
9 3sub_A ADP-ribosylation factor 100.0 3.2E-34 1.1E-38 234.9 5.2 90 18-108 7-97 (163)
10 2p57_A GTPase-activating prote 100.0 2.4E-34 8.3E-39 232.7 3.8 87 18-105 23-110 (144)
11 2b0o_E UPLC1; arfgap, structur 100.0 8.1E-33 2.8E-37 256.5 8.9 123 14-137 24-147 (301)
12 1dcq_A PYK2-associated protein 100.0 2.9E-32 9.8E-37 250.0 7.8 120 17-137 2-122 (278)
13 3lvq_E ARF-GAP with SH3 domain 100.0 5.4E-32 1.8E-36 267.4 5.0 122 16-138 7-129 (497)
14 3o47_A ADP-ribosylation factor 100.0 4.3E-29 1.5E-33 234.3 7.3 94 9-106 17-110 (329)
15 1wfj_A Putative elicitor-respo 99.9 1E-21 3.4E-26 160.4 13.5 127 174-335 4-132 (136)
16 2ep6_A MCTP2 protein; beta san 99.9 1.3E-21 4.4E-26 159.3 11.9 126 173-333 6-132 (133)
17 2fk9_A Protein kinase C, ETA t 99.9 1.6E-21 5.5E-26 163.2 12.4 123 173-332 22-156 (157)
18 3kwu_A MUNC13-1; calcium bindi 99.9 8.8E-21 3E-25 157.1 15.9 125 173-332 10-146 (148)
19 2dmh_A Myoferlin; beta-sandwic 99.9 7.7E-21 2.6E-25 155.9 14.2 124 178-335 5-135 (140)
20 1gmi_A Protein kinase C, epsil 99.8 6.6E-21 2.3E-25 155.8 12.4 119 176-333 2-133 (136)
21 3b7y_A E3 ubiquitin-protein li 99.8 1.8E-20 6.2E-25 156.1 14.0 129 178-333 18-153 (153)
22 3m7f_B E3 ubiquitin-protein li 99.8 2.3E-20 7.8E-25 159.3 13.9 129 179-334 7-142 (176)
23 2nq3_A Itchy homolog E3 ubiqui 99.8 2.2E-19 7.7E-24 152.9 14.4 129 178-335 34-163 (173)
24 1rlw_A Phospholipase A2, CALB 99.8 8.3E-20 2.8E-24 146.9 10.8 89 179-268 2-98 (126)
25 3pyc_A E3 ubiquitin-protein li 99.8 3.3E-18 1.1E-22 138.9 13.4 88 180-268 5-98 (132)
26 2b3r_A Phosphatidylinositol-4- 99.8 1.8E-18 6.2E-23 141.0 11.5 106 176-293 16-130 (134)
27 3rdl_A Protein kinase C alpha 99.8 1.5E-18 5.2E-23 141.5 9.4 110 178-300 14-131 (137)
28 3fbk_A RGS3, RGP3, regulator o 99.8 3.4E-18 1.2E-22 142.4 10.8 112 176-298 23-142 (153)
29 2z0u_A WW domain-containing pr 99.8 1.6E-18 5.3E-23 145.0 8.4 102 179-291 42-153 (155)
30 1rsy_A Synaptotagmin I; calciu 99.8 5.1E-18 1.7E-22 141.2 11.3 103 179-293 41-150 (152)
31 3f04_A Synaptotagmin-1; C2A, c 99.7 4.3E-18 1.5E-22 140.0 10.5 102 179-292 33-141 (143)
32 2q3x_A Regulating synaptic mem 99.7 5.8E-18 2E-22 143.8 10.6 107 178-296 28-142 (171)
33 1a25_A CALB, protein kinase C 99.7 4.4E-18 1.5E-22 141.1 9.5 102 179-293 30-139 (149)
34 2bwq_A Regulating synaptic mem 99.7 8.2E-18 2.8E-22 135.7 10.2 100 179-291 17-128 (129)
35 2d8k_A Synaptotagmin VII; exoc 99.7 1.3E-17 4.3E-22 136.9 11.4 103 179-293 25-135 (141)
36 1rh8_A Piccolo protein; beta-s 99.7 2.1E-18 7.2E-23 141.6 4.8 103 179-293 17-138 (142)
37 3fdw_A Synaptotagmin-like prot 99.7 5.8E-18 2E-22 140.2 7.4 104 179-294 22-135 (148)
38 1v27_A Regulating synaptic mem 99.7 1.3E-17 4.3E-22 136.6 8.8 102 179-293 20-133 (141)
39 3n5a_A Synaptotagmin-7; calciu 99.7 5.9E-18 2E-22 138.0 6.6 90 179-268 15-113 (138)
40 1wfm_A Synaptotagmin XIII; C2 99.7 6.5E-17 2.2E-21 132.3 12.9 100 179-293 25-132 (138)
41 1tjx_A Similar to synaptotagmi 99.7 1E-17 3.5E-22 140.4 7.9 115 179-293 24-147 (159)
42 2cm5_A Rabphilin-3A; protein t 99.7 1.6E-17 5.3E-22 140.3 8.1 90 179-268 36-134 (166)
43 1w15_A Synaptotagmin IV; metal 99.7 1.9E-17 6.6E-22 137.7 8.5 88 179-266 29-125 (153)
44 1ugk_A Synaptotagmin IV, KIAA1 99.7 5.2E-17 1.8E-21 132.7 10.7 91 179-269 21-120 (138)
45 2enp_A B/K protein; C2 type 1, 99.7 6.6E-17 2.3E-21 133.5 10.6 90 179-268 25-128 (147)
46 2chd_A Rabphilin-3A, exophilin 99.7 4.6E-17 1.6E-21 133.7 9.5 91 179-269 28-128 (142)
47 2dmg_A KIAA1228 protein; beta- 99.7 5.8E-17 2E-21 133.0 9.6 103 179-293 23-135 (142)
48 2cjt_A UNC-13 homolog A, MUNC1 99.7 1.6E-16 5.5E-21 129.0 11.4 86 179-269 4-90 (131)
49 2r83_A Synaptotagmin-1; C2A-C2 99.7 3.8E-16 1.3E-20 142.8 14.4 103 179-293 18-127 (284)
50 3jzy_A Intersectin 2; C2 domai 99.7 3.1E-16 1.1E-20 154.8 14.4 93 178-270 385-479 (510)
51 2cjs_A UNC-13 homolog A, MUNC1 99.7 1.5E-15 5.1E-20 128.4 14.0 86 179-269 13-99 (167)
52 1dqv_A Synaptotagmin III; beta 99.6 8.5E-16 2.9E-20 141.6 13.1 89 179-267 19-115 (296)
53 3nsj_A Perforin-1; pore formin 99.6 4.7E-15 1.6E-19 146.6 15.6 87 178-265 392-481 (540)
54 3l9b_A Otoferlin; C2-domain, b 99.6 1.1E-14 3.6E-19 118.0 13.8 85 182-270 23-111 (144)
55 2r83_A Synaptotagmin-1; C2A-C2 99.6 2.7E-15 9.3E-20 137.1 8.3 115 179-293 149-272 (284)
56 1djx_A PLC-D1, phosphoinositid 99.5 4.4E-14 1.5E-18 142.4 13.7 92 178-269 495-596 (624)
57 1cjy_A CPLA2, protein (cytosol 99.5 1.1E-14 3.7E-19 148.4 7.8 103 178-293 16-126 (749)
58 3bxj_A RAS GTPase-activating p 99.5 2.9E-15 9.8E-20 147.1 2.6 103 175-293 6-116 (483)
59 1dqv_A Synaptotagmin III; beta 99.5 8.9E-15 3.1E-19 134.7 4.4 115 179-293 151-275 (296)
60 3pfq_A PKC-B, PKC-beta, protei 99.3 1.8E-12 6.1E-17 132.3 9.0 107 179-298 171-285 (674)
61 3qr0_A Phospholipase C-beta (P 99.2 2E-10 6.9E-15 118.2 13.2 85 179-270 649-744 (816)
62 3ohm_B 1-phosphatidylinositol- 99.1 1.2E-10 4E-15 120.7 10.5 85 179-270 724-818 (885)
63 1yrk_A NPKC-delta, protein kin 99.1 1.3E-09 4.3E-14 85.7 13.2 114 179-332 5-124 (126)
64 2zkm_X 1-phosphatidylinositol- 99.1 2.3E-10 8E-15 118.0 11.5 84 179-269 677-771 (799)
65 2enj_A NPKC-theta, protein kin 99.1 1.1E-09 3.7E-14 87.2 10.7 88 178-270 8-102 (138)
66 3l4c_A Dedicator of cytokinesi 91.1 2.1 7.1E-05 36.8 10.7 55 212-266 78-139 (220)
67 2wxf_A Phosphatidylinositol-4, 85.1 4.1 0.00014 42.6 10.3 87 179-267 216-324 (940)
68 1gnf_A Transcription factor GA 82.0 0.57 2E-05 29.8 1.5 39 30-68 2-41 (46)
69 3hhm_A Phosphatidylinositol-4, 81.0 4.9 0.00017 42.5 8.9 88 179-267 354-455 (1091)
70 2yrb_A Protein fantom; beta sa 80.8 9.7 0.00033 30.7 8.8 89 180-270 18-119 (156)
71 1e7u_A Phosphatidylinositol 3- 78.7 8 0.00027 40.5 9.6 88 180-267 218-330 (961)
72 2vut_I AREA, nitrogen regulato 75.8 1.4 4.7E-05 27.5 1.8 35 33-67 2-37 (43)
73 1u5k_A Hypothetical protein; O 75.5 1.1 3.6E-05 39.1 1.8 46 30-91 148-193 (244)
74 1ffk_W Ribosomal protein L37AE 75.5 2.9 0.0001 29.2 3.7 40 18-59 12-52 (73)
75 4gat_A Nitrogen regulatory pro 75.1 1.8 6.3E-05 29.7 2.5 38 30-67 7-45 (66)
76 3dfx_A Trans-acting T-cell-spe 68.7 1.3 4.5E-05 30.1 0.5 39 29-67 4-43 (63)
77 4hc9_A Trans-acting T-cell-spe 66.7 2.5 8.5E-05 32.4 1.9 36 32-67 5-41 (115)
78 1vq8_Z 50S ribosomal protein L 62.9 2.9 9.9E-05 30.1 1.5 41 18-60 12-53 (83)
79 2y3a_A Phosphatidylinositol-4, 55.5 12 0.00041 39.8 5.1 87 179-267 352-470 (1092)
80 3g9m_A Glucocorticoid receptor 54.5 5.3 0.00018 29.1 1.7 30 31-63 1-30 (90)
81 1hcq_A Protein (estrogen recep 52.8 7.2 0.00025 28.0 2.1 32 30-64 2-33 (84)
82 2kgo_A Uncharacterized protein 52.5 0.72 2.5E-05 35.0 -3.4 44 20-63 40-88 (108)
83 1r4i_A Androgen receptor; AR, 50.4 7 0.00024 29.3 1.8 32 30-64 5-36 (105)
84 2han_B Ecdysone receptor; tran 50.2 9.3 0.00032 29.3 2.5 31 31-64 7-37 (119)
85 2kae_A GATA-type transcription 48.9 3.5 0.00012 28.7 -0.1 36 31-67 7-45 (71)
86 2ebl_A COUP transcription fact 48.3 6.1 0.00021 28.7 1.1 32 30-64 5-36 (89)
87 2han_A Protein ultraspiracle; 47.6 9.7 0.00033 27.9 2.2 31 31-64 9-39 (93)
88 3cc2_Z 50S ribosomal protein L 47.5 4.6 0.00016 30.8 0.4 40 18-59 45-85 (116)
89 1d4u_A Nucleotide excision rep 47.3 2.7 9.3E-05 32.0 -0.9 31 31-61 4-35 (111)
90 1dl6_A Transcription factor II 46.7 9.1 0.00031 25.3 1.7 26 33-59 12-37 (58)
91 2a66_A Orphan nuclear receptor 46.0 6.3 0.00022 30.0 1.0 33 29-64 6-38 (113)
92 1cit_A NGFI-B, protein (orphan 45.1 13 0.00043 27.0 2.4 28 34-64 2-29 (89)
93 1tjl_A DNAK suppressor protein 45.0 3.6 0.00012 33.1 -0.6 34 30-63 109-143 (151)
94 2nll_B Protein (thyroid hormon 43.0 10 0.00034 28.4 1.7 29 33-64 2-30 (103)
95 4hc9_A Trans-acting T-cell-spe 41.5 14 0.00049 28.1 2.3 39 29-67 56-95 (115)
96 1a6y_A Orphan nuclear receptor 40.4 12 0.0004 27.5 1.6 31 31-64 6-36 (94)
97 1dsz_A RAR-alpha, retinoic aci 39.8 13 0.00043 26.8 1.7 29 33-64 5-33 (86)
98 1kb2_A Vitamin D3 receptor; VD 36.0 14 0.00048 27.9 1.5 30 32-64 6-35 (110)
99 2uzg_A Ubiquitin carboxyl-term 34.1 27 0.00094 25.5 2.8 28 30-57 23-53 (97)
100 1lo1_A Steroid hormone recepto 33.5 8.6 0.00029 28.5 -0.1 30 32-64 4-33 (98)
101 1ynw_B Retinoic acid receptor 33.4 10 0.00035 28.1 0.4 30 32-64 3-32 (99)
102 1dsz_B RXR-alpha, retinoic aci 32.8 11 0.00036 27.1 0.3 31 31-64 4-34 (85)
103 4hn5_A Glucocorticoid receptor 30.7 21 0.00071 27.3 1.7 32 29-63 26-57 (117)
104 3k1f_M Transcription initiatio 30.0 31 0.0011 28.4 2.7 27 34-60 23-50 (197)
105 3izc_m 60S ribosomal protein R 30.0 38 0.0013 24.6 2.9 39 18-58 21-60 (92)
106 3j21_i 50S ribosomal protein L 29.6 27 0.00092 24.9 2.0 40 18-59 20-60 (83)
107 3cbb_A HNF-4-alpha, hepatocyte 29.3 15 0.0005 25.9 0.6 28 34-64 2-29 (78)
108 1pft_A TFIIB, PFTFIIBN; N-term 29.1 30 0.001 21.7 2.0 26 33-59 6-31 (50)
109 3dzy_D Peroxisome proliferator 28.6 19 0.00065 33.8 1.4 31 30-63 48-78 (419)
110 1qyp_A RNA polymerase II; tran 26.5 24 0.00081 22.9 1.2 29 32-60 15-51 (57)
111 3iz5_m 60S ribosomal protein L 26.3 38 0.0013 24.6 2.3 40 18-59 21-61 (92)
112 3j21_g 50S ribosomal protein L 25.8 14 0.00047 23.9 -0.1 23 31-59 13-35 (51)
113 2ida_A Hypothetical protein; z 22.1 15 0.00051 27.4 -0.6 28 30-61 16-43 (102)
114 1ovx_A ATP-dependent CLP prote 20.8 58 0.002 22.1 2.3 28 33-61 19-49 (67)
115 3d00_A Tungsten formylmethanof 20.7 12 0.00039 31.4 -1.6 22 34-60 165-186 (191)
116 4bbr_M Transcription initiatio 20.4 54 0.0018 29.8 2.7 26 34-59 23-49 (345)
117 3dzy_A Retinoic acid receptor 20.2 22 0.00075 33.9 0.0 30 31-63 136-165 (467)
No 1
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=100.00 E-value=3.4e-45 Score=298.16 Aligned_cols=131 Identities=41% Similarity=0.770 Sum_probs=118.4
Q ss_pred CCCCCCCCChHHHHHHHHhCCCCCCCcCCCCCCCCeEEeeeceEEcccchhhhccCCCceeeEeEecCCCCCHHHHHHHH
Q 019735 10 PLELGKPSSGKGRLKDLLLQRDNRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDDWSDDEVDAMI 89 (336)
Q Consensus 10 ~~~~~~~~~~~~~l~~~~~~~~N~~C~dC~~~~p~w~s~~~g~f~C~~C~~~hr~lg~~~s~v~s~~~d~~~~~~~~~~~ 89 (336)
...+.+++++++.|++|++.|+|+.|||||+++|+|||+|+|||||++|||+||+||+|||+||||+||+|++++|+.|+
T Consensus 7 ~~~~~~~e~~~~~l~~L~~~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hiS~VkSl~ld~w~~~~l~~m~ 86 (141)
T 2crr_A 7 GKAQKLNEQHQLILSKLLREEDNKYCADCEAKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTAEQIQCMQ 86 (141)
T ss_dssp CCTTTTTTCHHHHHHHHHHSGGGSSCSSSCCSSCCSEETTTTEECCHHHHHHHHHHCTTTCCCBCSSSSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCccCCcCCCCCCCCCCeEEeccCeEEhhhhhHhHhcCCCCCCeeeECCCCCCCHHHHHHHH
Confidence 44455667899999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred HhccccccchhhhhccCCCCCCCCCCCCHHHHHHHHHhhhccceecCCcccccCC
Q 019735 90 EVGGNSSANAIYEAFIPEGVSKPGPDSSHEIRSKFIRSKYELQEFLKPSLRIASG 144 (336)
Q Consensus 90 ~~ggN~~~n~~~e~~~~~~~~~p~~~~~~~~r~~fI~~KY~~k~~~~~~~~~~s~ 144 (336)
. +||..||++||+++|+.+.+|.++ ..+++||++||++++|+.+.....+.
T Consensus 87 ~-~GN~~an~~~e~~lp~~~~~P~~~---~~~e~fIr~KY~~k~f~~~~~~~~~~ 137 (141)
T 2crr_A 87 D-MGNTKARLLYEANLPENFRRPQTD---QAVEFFIRDKYEKKKYYDKNAIAISG 137 (141)
T ss_dssp H-THHHHHHHHGGGSCCTTCCCCCSH---HHHHHHHHHHHTSCTTCCCGGGCCCC
T ss_pred H-HccHHHHHHHHhcCCcccCCCCch---HHHHHHHHHHHhcCcccCCCccccCC
Confidence 6 599999999999999987777653 46899999999999999887555444
No 2
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens}
Probab=100.00 E-value=2.6e-45 Score=296.29 Aligned_cols=125 Identities=46% Similarity=0.903 Sum_probs=111.1
Q ss_pred CCCCCChHHHHHHHHhCCCCCCCcCCCCCCCCeEEeeeceEEcccchhhhccCCCceeeEeEecCCCCCHHHHHHHHHhc
Q 019735 13 LGKPSSGKGRLKDLLLQRDNRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDDWSDDEVDAMIEVG 92 (336)
Q Consensus 13 ~~~~~~~~~~l~~~~~~~~N~~C~dC~~~~p~w~s~~~g~f~C~~C~~~hr~lg~~~s~v~s~~~d~~~~~~~~~~~~~g 92 (336)
..+.|++++.|++|++.|+|+.|||||+++|+|||+|+|||||+.|||+||+||+|||+||||+||+|++++|+.|.. +
T Consensus 8 ~~~~e~~~~~l~~L~~~p~N~~CaDCg~~~P~WaS~n~GvfiC~~CsgiHR~lG~hiS~VkSl~ld~w~~~~l~~m~~-~ 86 (134)
T 2iqj_A 8 VKDVDRYQAVLANLLLEEDNKFCADCQSKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTQEQIQCMQE-M 86 (134)
T ss_dssp -----CCHHHHHHHTTSGGGGBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCHHHHHHHHT-C
T ss_pred HhHHHHHHHHHHHHHcCcCCCcCCcCcCCCCCeEEecCCEEEhHhhhHHHhcCCCCCCceeeccccCCCHHHHHHHHH-H
Confidence 344577899999999999999999999999999999999999999999999999999999999999999999999965 6
Q ss_pred cccccchhhhhccCCCCCCCCCCCCHHHHHHHHHhhhccceecCCcccc
Q 019735 93 GNSSANAIYEAFIPEGVSKPGPDSSHEIRSKFIRSKYELQEFLKPSLRI 141 (336)
Q Consensus 93 gN~~~n~~~e~~~~~~~~~p~~~~~~~~r~~fI~~KY~~k~~~~~~~~~ 141 (336)
||..||++||+++|+.+.+|.++ ..+++||++||++++|+.+...+
T Consensus 87 GN~~an~~~e~~lp~~~~~P~~~---~~~e~fIr~KY~~k~f~~~~~~i 132 (134)
T 2iqj_A 87 GNGKANRLYEAYLPETFRRPQID---PAVEGFIRDKYEKKKYMDRSLDI 132 (134)
T ss_dssp HHHHHHHHHTTTCCSSCCCCCSH---HHHHHHHHHHHTSCTTCCTTC--
T ss_pred chHHHHHHHHhcCCccCCCCCch---HHHHHHHHHHHhCCeeeCCcccc
Confidence 99999999999999987777553 46899999999999999887544
No 3
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A
Probab=100.00 E-value=2.2e-42 Score=281.26 Aligned_cols=123 Identities=22% Similarity=0.491 Sum_probs=109.7
Q ss_pred CCCChHHHHHHHHhCCCCCCCcCCCCCCCCeEEeeeceEEcccchhhhccCCCceeeEeEecCCCCCHHHHHHHHHhccc
Q 019735 15 KPSSGKGRLKDLLLQRDNRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDDWSDDEVDAMIEVGGN 94 (336)
Q Consensus 15 ~~~~~~~~l~~~~~~~~N~~C~dC~~~~p~w~s~~~g~f~C~~C~~~hr~lg~~~s~v~s~~~d~~~~~~~~~~~~~ggN 94 (336)
++|++++.|++|++.|+|+.|||||+++|+|||+|+|||||+.|||+||+||+| |+||||+||+|++++|+.|.. |||
T Consensus 8 ~~e~~~~~l~~l~~~p~N~~CaDCg~~~P~WaS~n~GvfiC~~CsgiHR~LG~~-s~VrSl~ld~w~~~~l~~m~~-~GN 85 (140)
T 2olm_A 8 QEEKHLKMLRDMTGLPHNRKCFDCDQRGPTYVNMTVGSFVCTSCSGSLRGLNPP-HRVKSISMTTFTQQEIEFLQK-HGN 85 (140)
T ss_dssp HHHHHHHHHHHHHTSGGGGSCTTTCSSCCCEEETTTTEEECHHHHHHHTTSSSC-CCEEETTTCCCCHHHHHHHHH-CHH
T ss_pred HHHHHHHHHHHHhcCcCCCcCCCCCCCCCCceeeccCEEEchhccchhccCCCc-ceeeecCCCCCCHHHHHHHHH-hcc
Confidence 346788999999999999999999999999999999999999999999999997 999999999999999999976 699
Q ss_pred cccchhhhhccCCC-CCCCCCCCCHHHHHHHHHhhhccceecCCccc
Q 019735 95 SSANAIYEAFIPEG-VSKPGPDSSHEIRSKFIRSKYELQEFLKPSLR 140 (336)
Q Consensus 95 ~~~n~~~e~~~~~~-~~~p~~~~~~~~r~~fI~~KY~~k~~~~~~~~ 140 (336)
..+|++||+++++. .++|.+. +...+++||++||++++|+.|...
T Consensus 86 ~~an~~~e~~~~~~~~~~P~~~-d~~~~~~fIr~KYe~k~f~~~~~~ 131 (140)
T 2olm_A 86 EVCKQIWLGLFDDRSSAIPDFR-DPQKVKEFLQEKYEKKRWYVPPEQ 131 (140)
T ss_dssp HHHHHHHTTTCCTTTSCCCCTT-CHHHHHHHHHHHHTSCTTCCCHHH
T ss_pred HHHHHHHHhhCCcccCCCCCCC-CHHHHHHHHHHHHcCCeeeCCccc
Confidence 99999999999763 3455443 345788899999999999987643
No 4
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*
Probab=100.00 E-value=6.2e-38 Score=299.68 Aligned_cols=124 Identities=44% Similarity=0.811 Sum_probs=117.7
Q ss_pred CCCCChHHHHHHHHhCCCCCCCcCCCCCCCCeEEeeeceEEcccchhhhccCCCceeeEeEecCCCCCHHHHHHHHHhcc
Q 019735 14 GKPSSGKGRLKDLLLQRDNRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDDWSDDEVDAMIEVGG 93 (336)
Q Consensus 14 ~~~~~~~~~l~~~~~~~~N~~C~dC~~~~p~w~s~~~g~f~C~~C~~~hr~lg~~~s~v~s~~~d~~~~~~~~~~~~~gg 93 (336)
.++++++++|++|++.|+|+.|||||+++|+|||+|+|||||++|||+||+| +|||+||||+||.|++++|+.|.. +|
T Consensus 16 ~q~~~~~~~l~~l~~~~~N~~C~dC~~~~p~w~s~~~g~~~C~~Csg~hr~l-~his~v~s~~ld~w~~~~~~~~~~-~g 93 (386)
T 3lju_X 16 FQGKERRRAVLELLQRPGNARCADCGAPDPDWASYTLGVFICLSCSGIHRNI-PQVSKVKSVRLDAWEEAQVEFMAS-HG 93 (386)
T ss_dssp HHHHHHHHHHHHHTTSGGGSBCTTTCCBSCCEEETTTTEEECHHHHHHHHTC-TTTCCEEETTTSCCCHHHHHHHHH-SS
T ss_pred hhhhHHHHHHHHHhcCcCCCcCccCCCCCCCeEEecccEEEhhhhchHhhCC-CccceeeeecccCCCHHHHHHHHH-hc
Confidence 4456789999999999999999999999999999999999999999999999 999999999999999999999976 59
Q ss_pred ccccchhhhhccCCCCCCCCCCCCHHHHHHHHHhhhccceecCCcc
Q 019735 94 NSSANAIYEAFIPEGVSKPGPDSSHEIRSKFIRSKYELQEFLKPSL 139 (336)
Q Consensus 94 N~~~n~~~e~~~~~~~~~p~~~~~~~~r~~fI~~KY~~k~~~~~~~ 139 (336)
|..||++||+++|+...+|.++++...|++||++||++++|+.|..
T Consensus 94 N~~~~~~~e~~~~~~~~~p~~~~~~~~~e~fIr~KY~~~~f~~~~~ 139 (386)
T 3lju_X 94 NDAARARFESKVPSFYYRPTPSDCQLLREQWIRAKYERQEFIYPEK 139 (386)
T ss_dssp HHHHHHHHTTTCCTTSCCCCTTSCHHHHHHHHHHHHTSCTTTSGGG
T ss_pred chHHHHHHhccCCccCCCCCCccchHHHHHEHHhhhCCCEEECCcc
Confidence 9999999999999988899999999999999999999999998874
No 5
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=100.00 E-value=1.2e-37 Score=296.76 Aligned_cols=123 Identities=41% Similarity=0.739 Sum_probs=113.9
Q ss_pred CCChHHHHHHHHhCCCCCCCcCCCCCCCCeEEeeeceEEcccchhhhccCCCceeeEeEecCCCCCHHHHHHHHHhcccc
Q 019735 16 PSSGKGRLKDLLLQRDNRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDDWSDDEVDAMIEVGGNS 95 (336)
Q Consensus 16 ~~~~~~~l~~~~~~~~N~~C~dC~~~~p~w~s~~~g~f~C~~C~~~hr~lg~~~s~v~s~~~d~~~~~~~~~~~~~ggN~ 95 (336)
++++++.|+.|++.|+|+.|||||+++|+|||+|+|||||++|||+||+||+|||+||||+||.|++++|+.|.. +||.
T Consensus 29 ~~~~~~~~~~~~~~~~n~~c~dc~~~~p~w~s~~~g~~~c~~c~~~hr~lg~~~s~v~s~~~d~w~~~~~~~~~~-~gn~ 107 (368)
T 3jue_A 29 PGGVGHVVAQVQSVDGNAQCCDCREPAPEWASINLGVTLCIQCSGIHRSLGVHFSKVRSLTLDSWEPELVKLMCE-LGNV 107 (368)
T ss_dssp ---CCCHHHHHHTSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCHHHHHHHHH-SCHH
T ss_pred hhHHHHHHHHHHcCCCcCcCCCCCCCCCCeEEecCCeEEcHhHHHHHhccCCCcCeeEEeecccccHHHHHHHHH-HccH
Confidence 456889999999999999999999999999999999999999999999999999999999999999999999986 5999
Q ss_pred ccchhhhhccCC-CCCCCCCCCCHHHHHHHHHhhhccceecCCcc
Q 019735 96 SANAIYEAFIPE-GVSKPGPDSSHEIRSKFIRSKYELQEFLKPSL 139 (336)
Q Consensus 96 ~~n~~~e~~~~~-~~~~p~~~~~~~~r~~fI~~KY~~k~~~~~~~ 139 (336)
.+|++||+++|+ ...+|.|+++.+.|++||++||++++|+.+..
T Consensus 108 ~~n~~~e~~~~~~~~~kp~~~~~~~~re~fIr~KY~~k~f~~~l~ 152 (368)
T 3jue_A 108 IINQIYEARVEAMAVKKPGPSCSRQEKEAWIHAKYVEKKFLTKLP 152 (368)
T ss_dssp HHHHHHTTTTTTTTCCCCCTTSCHHHHHHHHHHHHTSCTTCCSCC
T ss_pred HHHHHHHhhcccccCcCCCCCCCHHHHHHHHHHHHHhhcccccch
Confidence 999999999986 45789999999999999999999999997743
No 6
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II}
Probab=100.00 E-value=1e-36 Score=246.47 Aligned_cols=109 Identities=28% Similarity=0.505 Sum_probs=93.9
Q ss_pred HHHHHHHHhCCCCCCCcCCCCCCCCeEEeeeceEEcccchhhhccCCCceeeEeEecCCCCCHHHHHHHHHhccccccch
Q 019735 20 KGRLKDLLLQRDNRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDDWSDDEVDAMIEVGGNSSANA 99 (336)
Q Consensus 20 ~~~l~~~~~~~~N~~C~dC~~~~p~w~s~~~g~f~C~~C~~~hr~lg~~~s~v~s~~~d~~~~~~~~~~~~~ggN~~~n~ 99 (336)
++.++.|++.|+|+.|||||+++|+|||+|+|||||++|||+||+||+|||+|||++||+|++++|+.|+. |||.++|+
T Consensus 24 ~~l~~~l~~~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hiS~VrSl~lD~w~~~~l~~m~~-~GN~~an~ 102 (138)
T 2owa_A 24 DNFFQIVRNRPENRTCFDCESRNPTWLSLSFAVFICLNCSSDHRKMGVHISFVRSSDLDKFTPIQLVRMDI-GGNGRARN 102 (138)
T ss_dssp HHHHHHHHHSGGGGBCTTTCCBSCCEEETTTTEEECHHHHHHHHTTCTTTCCEEETTTSCCCHHHHHHHHH-CCHHHHHH
T ss_pred HHHHHHHHcCcCCCcCCCCcCCCCCeEEecCCEEEhHhhhHHHhCCCCCCCeeeecCcCcCCHHHHHHHHh-hccHHHHH
Confidence 34456699999999999999999999999999999999999999999999999999999999999999975 69999999
Q ss_pred hhhhccCCCCCCCCCCCCHHHHHHHHHhhhccce
Q 019735 100 IYEAFIPEGVSKPGPDSSHEIRSKFIRSKYELQE 133 (336)
Q Consensus 100 ~~e~~~~~~~~~p~~~~~~~~r~~fI~~KY~~k~ 133 (336)
+||++.... | +.+..+..+.|+..+|+++.
T Consensus 103 ~~e~~~~~~---~-~~~~~~kY~s~~a~~Y~~kL 132 (138)
T 2owa_A 103 YFKQVLGVN---F-SPKTKEYASSICGRQYKQIL 132 (138)
T ss_dssp HHHHHTCTT---C-CGGGCHHHHSHHHHHHHHHH
T ss_pred HHHHHcCCC---C-CCCHHHHHhhHHHHHHHHHH
Confidence 999864332 2 11233455789999998874
No 7
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=100.00 E-value=6.9e-37 Score=249.97 Aligned_cols=90 Identities=41% Similarity=0.733 Sum_probs=84.9
Q ss_pred CChHHHHHHHHhCCCCCCCcCCCCCCCCeEEeeeceEEcccchhhhccCCCceeeEeEecCCC-CCHHHHHHHHHhcccc
Q 019735 17 SSGKGRLKDLLLQRDNRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDD-WSDDEVDAMIEVGGNS 95 (336)
Q Consensus 17 ~~~~~~l~~~~~~~~N~~C~dC~~~~p~w~s~~~g~f~C~~C~~~hr~lg~~~s~v~s~~~d~-~~~~~~~~~~~~ggN~ 95 (336)
+..++.|++|++.|+|+.|||||+++|+|||+|||||||++|||+||.||+|||+|||++||. |++++|+.|+ .|||.
T Consensus 14 ~~~~~~l~~L~~~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hiS~VrSl~LD~~W~~~~l~~m~-~~GN~ 92 (149)
T 2crw_A 14 QDILTIFKRLRSVPTNKVCFDCGAKNPSWASITYGVFLCIDCSGSHRSLGVHLSFIRSTELDSNWSWFQLRCMQ-VGGNA 92 (149)
T ss_dssp HHHHHHHHHHHHSTTTSBCSSSCCBSCCCEETTTTEECCHHHHHHHHHHCTTTCCEECSSSCCCCCHHHHHHHH-TTCHH
T ss_pred HHHHHHHHHHhcCcCCCcCCCCcCCCCCcEEeccCEEEchhcchhhccCCCCCCeeeccccCCCCCHHHHHHHH-HHhhH
Confidence 457889999999999999999999999999999999999999999999999999999999995 9999999996 57999
Q ss_pred ccchhhhhccCC
Q 019735 96 SANAIYEAFIPE 107 (336)
Q Consensus 96 ~~n~~~e~~~~~ 107 (336)
++|++||++.+.
T Consensus 93 ~an~~~e~~~~~ 104 (149)
T 2crw_A 93 SASSFFHQHGCS 104 (149)
T ss_dssp HHHHHHHHHCCC
T ss_pred HHHHHHHhcCCC
Confidence 999999998754
No 8
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens}
Probab=100.00 E-value=1e-35 Score=240.45 Aligned_cols=88 Identities=41% Similarity=0.819 Sum_probs=82.5
Q ss_pred CChHHHHHHHHhCCCCCCCcCCCCCCCCeEEeeeceEEcccchhhhccCCCceeeEeEecCCCCCHHHHHHHHHhccccc
Q 019735 17 SSGKGRLKDLLLQRDNRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDDWSDDEVDAMIEVGGNSS 96 (336)
Q Consensus 17 ~~~~~~l~~~~~~~~N~~C~dC~~~~p~w~s~~~g~f~C~~C~~~hr~lg~~~s~v~s~~~d~~~~~~~~~~~~~ggN~~ 96 (336)
+++++.|++|++.|+|+.|||||+++|+|||+|+|||||++|||+||+||+|||+||||+||+|+++||+.|+. |||.+
T Consensus 23 ~~~~~~l~~L~~~p~N~~CaDCga~~P~WaS~nlGvfiC~~CSgiHR~LG~hISkVkSl~LD~W~~~el~~m~~-~GN~~ 101 (147)
T 3dwd_A 23 PRTRKVLKEVRVQDENNVCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMDKWKDIELEKMKA-GGNAK 101 (147)
T ss_dssp HHHHHHHHHHHTSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEESCC--CCHHHHHHHHH-CCHHH
T ss_pred HHHHHHHHHHHcCcCCCccCCCCCCCCCeEEecccEeEhHhhChHHhcCCCCCCccccccccCCCHHHHHHHHH-HhhHH
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999975 79999
Q ss_pred cchhhhhcc
Q 019735 97 ANAIYEAFI 105 (336)
Q Consensus 97 ~n~~~e~~~ 105 (336)
+|++||+..
T Consensus 102 an~~~ea~~ 110 (147)
T 3dwd_A 102 FREFLESQE 110 (147)
T ss_dssp HHHHHHTST
T ss_pred HHHHHHhCC
Confidence 999999863
No 9
>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7}
Probab=100.00 E-value=3.2e-34 Score=234.88 Aligned_cols=90 Identities=34% Similarity=0.730 Sum_probs=84.2
Q ss_pred ChHHHHHHHHhC-CCCCCCcCCCCCCCCeEEeeeceEEcccchhhhccCCCceeeEeEecCCCCCHHHHHHHHHhccccc
Q 019735 18 SGKGRLKDLLLQ-RDNRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDDWSDDEVDAMIEVGGNSS 96 (336)
Q Consensus 18 ~~~~~l~~~~~~-~~N~~C~dC~~~~p~w~s~~~g~f~C~~C~~~hr~lg~~~s~v~s~~~d~~~~~~~~~~~~~ggN~~ 96 (336)
.+++.|++|.+. |+|+.|||||+++|+|||+|+|||||++|||+||+||+|||+||||+||.|++++|+.|.. |||.+
T Consensus 7 ~a~~~l~~L~~~~p~N~~CaDCga~~P~WaS~nlGvflCi~CSGiHR~LG~hISkVKSltLD~Wt~e~l~~m~~-~GN~~ 85 (163)
T 3sub_A 7 AAVEFINRLKKEDESNNKCFDCGISNPDWVSVNHGIFLCINCSGVHRSLGVHISIVRSIKMDIFTDEQLKYIDK-GGNKK 85 (163)
T ss_dssp HHHHHHHHHHHHSGGGGBCTTTCCBSCCEEETTTTEEECHHHHHHHHHTCTTTCCEEETTTCCCCHHHHHHHHH-CCHHH
T ss_pred HHHHHHHHHHhCCCCCCccccCCCCCCCeEEecCCeeEHHhhhHHhcCCCCCCCeeeeccccCcCHHHHHHHHh-hCHHH
Confidence 467889999985 8999999999999999999999999999999999999999999999999999999999965 79999
Q ss_pred cchhhhhccCCC
Q 019735 97 ANAIYEAFIPEG 108 (336)
Q Consensus 97 ~n~~~e~~~~~~ 108 (336)
+|.+||++.+.+
T Consensus 86 an~~~e~~g~~~ 97 (163)
T 3sub_A 86 CQTYLENYGISD 97 (163)
T ss_dssp HHHHHHHTTCTT
T ss_pred HHHHHHHcCCcc
Confidence 999999986654
No 10
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens}
Probab=100.00 E-value=2.4e-34 Score=232.70 Aligned_cols=87 Identities=41% Similarity=0.760 Sum_probs=81.0
Q ss_pred ChHHHHHHHHhCCCCCCCcCCCCCCCCeEEeeeceEEcccchhhhccCCCceeeEeEecCCC-CCHHHHHHHHHhccccc
Q 019735 18 SGKGRLKDLLLQRDNRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDD-WSDDEVDAMIEVGGNSS 96 (336)
Q Consensus 18 ~~~~~l~~~~~~~~N~~C~dC~~~~p~w~s~~~g~f~C~~C~~~hr~lg~~~s~v~s~~~d~-~~~~~~~~~~~~ggN~~ 96 (336)
..++.|+.|++.|+|+.|||||+++|+|||+|||||||+.|||+||+||+|||+|||++||. |++++|+.|+. |||.+
T Consensus 23 ~~~~~l~~L~~~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hIS~VrSl~LD~~W~~~~l~~m~~-~GN~~ 101 (144)
T 2p57_A 23 EIQTLFKRLRAVPTNKACFDCGAKNPSWASITYGVFLCIDCSGVHRSLGVHLSFIRSTELDSNWNWFQLRCMQV-GGNAN 101 (144)
T ss_dssp HHHHHHHHHHHSGGGGBCTTTCCBSCCEEEGGGTEEECHHHHHHHHHHCTTTCCEEESSSCCCCCHHHHHHHHH-CCHHH
T ss_pred HHHHHHHHHhcCCCCCcCCCCcCCCCCeEEeccCEEEhhhchHHHcCCCCCCCeeeecccCCCCCHHHHHHHHH-hCHHH
Confidence 45666778888999999999999999999999999999999999999999999999999996 99999999964 79999
Q ss_pred cchhhhhcc
Q 019735 97 ANAIYEAFI 105 (336)
Q Consensus 97 ~n~~~e~~~ 105 (336)
||++||+..
T Consensus 102 an~~~e~~g 110 (144)
T 2p57_A 102 ATAFFRQHG 110 (144)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHcC
Confidence 999999873
No 11
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.97 E-value=8.1e-33 Score=256.53 Aligned_cols=123 Identities=35% Similarity=0.614 Sum_probs=112.6
Q ss_pred CCCCChHHHHHHHHhCCCCCCCcCCCCCCCCeEEeeeceEEcccchhhhccCCCceeeEeEecCCCCCHHHHHHHHHhcc
Q 019735 14 GKPSSGKGRLKDLLLQRDNRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDDWSDDEVDAMIEVGG 93 (336)
Q Consensus 14 ~~~~~~~~~l~~~~~~~~N~~C~dC~~~~p~w~s~~~g~f~C~~C~~~hr~lg~~~s~v~s~~~d~~~~~~~~~~~~~gg 93 (336)
..++..++.|++|++.|+|+.|||||+++|+|||+|+|+|+|++|||+||+||+|||+|||++||.|+++++..|.. +|
T Consensus 24 ~~~~~~~~~~~~~~~~~~n~~c~dc~~~~p~w~s~~~g~~~c~~cs~~hr~lg~~is~v~sl~lD~w~~~~l~~~~~-~G 102 (301)
T 2b0o_E 24 EPHDLTKLLIAEVKSRPGNSQCCDCGAADPTWLSTNLGVLTCIQCSGVHRELGVRFSRMQSLTLDLLGPSELLLALN-MG 102 (301)
T ss_dssp ---CHHHHHHHHHHTSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCHHHHHHHHH-CC
T ss_pred CHHHHHHHHHHHHhcCCCCCcCCCCCCCCCCeEEeecCeEEcHHHHHHHHhhCCCcccccccCcCCCCHHHHHHHHH-cC
Confidence 34456778889999999999999999999999999999999999999999999999999999999999999999976 49
Q ss_pred ccccchhhhhccCCC-CCCCCCCCCHHHHHHHHHhhhccceecCC
Q 019735 94 NSSANAIYEAFIPEG-VSKPGPDSSHEIRSKFIRSKYELQEFLKP 137 (336)
Q Consensus 94 N~~~n~~~e~~~~~~-~~~p~~~~~~~~r~~fI~~KY~~k~~~~~ 137 (336)
|..+|.+||+.+|.. ..+|.+.++...|+.||++||+.+.|..+
T Consensus 103 N~~~n~i~E~~l~~~~~~kP~~~s~~~~r~~~I~~Ky~~~~f~~~ 147 (301)
T 2b0o_E 103 NTSFNEVMEAQLPSHGGPKPSAESDMGTRRDYIMAKYVEHRFARR 147 (301)
T ss_dssp HHHHHHHHTTTCCSSSCSCCCTTCCHHHHHHHHHHHHTSCTTSCC
T ss_pred CHHHHHHHHHhhhhccCCCCCCcccHHHHHHHHHHHHHhhhhhcc
Confidence 999999999999875 67899988999999999999999998765
No 12
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.97 E-value=2.9e-32 Score=250.02 Aligned_cols=120 Identities=35% Similarity=0.677 Sum_probs=111.9
Q ss_pred CChHHHHHHHHhCCCCCCCcCCCCCCCCeEEeeeceEEcccchhhhccCCCceeeEeEecCCCCCHHHHHHHHHhccccc
Q 019735 17 SSGKGRLKDLLLQRDNRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDDWSDDEVDAMIEVGGNSS 96 (336)
Q Consensus 17 ~~~~~~l~~~~~~~~N~~C~dC~~~~p~w~s~~~g~f~C~~C~~~hr~lg~~~s~v~s~~~d~~~~~~~~~~~~~ggN~~ 96 (336)
|..++.|++|++.|+|+.|||||+++|+|+|+|+|+|+|++|||+||+||+|||+|||++||.|+++++..|.. +||..
T Consensus 2 ~~~~~~~~~~~~~~~n~~c~dc~~~~p~w~s~~~g~~~c~~c~~~hr~lg~~is~v~s~~~d~~~~~~l~~~~~-~GN~~ 80 (278)
T 1dcq_A 2 ELTKEIISEVQRMTGNDVCCDCGAPDPTWLSTNLGILTCIECSGIHRELGVHYSRMQSLTLDVLGTSELLLAKN-IGNAG 80 (278)
T ss_dssp -CHHHHHHHHHHSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCGGGGHHHHH-SCHHH
T ss_pred chHHHHHHHHHcCCCCCcCCCCCCCCCCeEEecCCeEEcHHHHHHHhhcCCCcceeeeeecCCCCHHHHHHHHH-cCcHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999976 59999
Q ss_pred cchhhhhccCCCC-CCCCCCCCHHHHHHHHHhhhccceecCC
Q 019735 97 ANAIYEAFIPEGV-SKPGPDSSHEIRSKFIRSKYELQEFLKP 137 (336)
Q Consensus 97 ~n~~~e~~~~~~~-~~p~~~~~~~~r~~fI~~KY~~k~~~~~ 137 (336)
+|++||+.+|... .+|.+.++...+++||+.||..+.|..+
T Consensus 81 ~n~i~e~~l~~~~~~kP~~~s~~~~~~~fI~aKYl~~~f~~~ 122 (278)
T 1dcq_A 81 FNEIMECCLPSEDPVKPNPGSDMIARKDYITAKYMERRYARK 122 (278)
T ss_dssp HHHHHTTTCCSSSCCSCCTTCCHHHHHHHHHHHHTTCTTSCC
T ss_pred HHHHHHhhCChhhcCCCCCCCCHHHHHHHHHHHHHHhhcccc
Confidence 9999999998764 3888988899999999999999998765
No 13
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.97 E-value=5.4e-32 Score=267.44 Aligned_cols=122 Identities=35% Similarity=0.623 Sum_probs=113.0
Q ss_pred CCChHHHHHHHHhCCCCCCCcCCCCCCCCeEEeeeceEEcccchhhhccCCCceeeEeEecCCCCCHHHHHHHHHhcccc
Q 019735 16 PSSGKGRLKDLLLQRDNRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDDWSDDEVDAMIEVGGNS 95 (336)
Q Consensus 16 ~~~~~~~l~~~~~~~~N~~C~dC~~~~p~w~s~~~g~f~C~~C~~~hr~lg~~~s~v~s~~~d~~~~~~~~~~~~~ggN~ 95 (336)
++.+++.++.+++.|+|+.|||||+++|+|+|+|+|||+|++|||+||+||+|||+|||++||.|+++++..|.. +||.
T Consensus 7 ~~~~~~~~~~~~~~~~n~~c~dc~~~~p~w~s~~~~~~~c~~c~~~hr~lg~~~s~vrsl~ld~w~~~~~~l~~~-~GN~ 85 (497)
T 3lvq_E 7 HDLTKLLIAEVKSRPGNSQCCDCGAADPTWLSTNLGVLTCIQCSGVHRELGVRFSRMQSLTLDLLGPSELLLALN-MGNT 85 (497)
T ss_dssp -CHHHHHHHHHHTSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCGGGGTTTTT-CCHH
T ss_pred HHHHHHHHHHHhcCCCCCcccCCCCCCCCEEEechhHHhHHhhHHHHHhhccccceecccccCCCCHHHHHHHHH-HhhH
Confidence 456889999999999999999999999999999999999999999999999999999999999999999999976 5999
Q ss_pred ccchhhhhccCCC-CCCCCCCCCHHHHHHHHHhhhccceecCCc
Q 019735 96 SANAIYEAFIPEG-VSKPGPDSSHEIRSKFIRSKYELQEFLKPS 138 (336)
Q Consensus 96 ~~n~~~e~~~~~~-~~~p~~~~~~~~r~~fI~~KY~~k~~~~~~ 138 (336)
.+|.+||+.+|.. ..+|.+.++...|+.||++||+++.|..+.
T Consensus 86 ~an~i~E~~lp~~~~~kP~~~s~~~~re~fIraky~~~~f~~~~ 129 (497)
T 3lvq_E 86 SFNEVMEAQLPSHGGPKPSAESDMGTRRDYIMAKYVEHRFARRC 129 (497)
T ss_dssp HHHHHHTTTCCSSSCSCCCTTCCHHHHHHHHHHHHTTCTTSCCC
T ss_pred HHHHHHHhhcccccCCCCCCcCcHHHHHHHHHHHhhcccccccc
Confidence 9999999999864 468888889999999999999999998654
No 14
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.95 E-value=4.3e-29 Score=234.31 Aligned_cols=94 Identities=38% Similarity=0.766 Sum_probs=84.6
Q ss_pred CCCCCCCCCChHHHHHHHHhCCCCCCCcCCCCCCCCeEEeeeceEEcccchhhhccCCCceeeEeEecCCCCCHHHHHHH
Q 019735 9 RPLELGKPSSGKGRLKDLLLQRDNRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDDWSDDEVDAM 88 (336)
Q Consensus 9 ~~~~~~~~~~~~~~l~~~~~~~~N~~C~dC~~~~p~w~s~~~g~f~C~~C~~~hr~lg~~~s~v~s~~~d~~~~~~~~~~ 88 (336)
+||++ +++++.|++|++.|+|+.|||||+++|+|||+|+|||+|++|||+||+||+|||+|||++||+|++++|+.|
T Consensus 17 ~~~~~---~~~~~~~~~~~~~~~n~~c~dc~~~~~~~~~~~~~~~~c~~c~~~hr~~~~~~s~v~s~~~~~~~~~~~~~~ 93 (329)
T 3o47_A 17 QGMAS---PRTRKVLKEVRVQDENNVCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMDKWKDIELEKM 93 (329)
T ss_dssp ---------CHHHHHHHHHHSTTTTBCTTTCCBSCCEEEGGGTEEECHHHHHHHHHHCTTTCCEEESSSCCCCHHHHHHH
T ss_pred cccCC---HHHHHHHHHHHcCCCCCcCCCCCCCCCCeEEecCCEEEChhhhhhhcccCCCcCEEeeccccCCCHHHHHHH
Confidence 45543 568999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccccccchhhhhccC
Q 019735 89 IEVGGNSSANAIYEAFIP 106 (336)
Q Consensus 89 ~~~ggN~~~n~~~e~~~~ 106 (336)
.. +||.++|++||+...
T Consensus 94 ~~-~gN~~~n~~~e~~~~ 110 (329)
T 3o47_A 94 KA-GGNAKFREFLESQED 110 (329)
T ss_dssp HH-CCHHHHHHHHHTCSS
T ss_pred HH-hCcHHHHHHHHhcCC
Confidence 76 699999999998754
No 15
>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2
Probab=99.87 E-value=1e-21 Score=160.43 Aligned_cols=127 Identities=26% Similarity=0.412 Sum_probs=109.1
Q ss_pred ceeEEEEEEEEEEEeeeecccCCCC-CCCcEEEEEECCeEEEeeeeC-CCCCceeeceeeecccCCCCceEEEEEecCCC
Q 019735 174 GMVEFIGLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQQTVQTTIVK-SNLNPVWNEELMLSVPQEYGPVKLEVFDHDTF 251 (336)
Q Consensus 174 g~~~~~g~L~V~v~~a~~L~~~~~~-~~dPyv~i~l~~~~~rT~~~~-~t~nP~W~e~f~f~v~~~~~~L~v~V~d~~~~ 251 (336)
+.....|.|+|+|++|++|+..+.. .+||||+++++.++++|++++ +++||+|||+|.|.+......|.|+|||++.+
T Consensus 4 ~~~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~l~~~V~d~~~~ 83 (136)
T 1wfj_A 4 GSSGPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEGTTELKAKIFDKDVG 83 (136)
T ss_dssp CCCCCEEEEEEEEEEEEECSSCCSSCSSCCCEEEESSSCEEECCCCTTCCSSCEEEEEEEEEEESSCCEEEEEECCSSSC
T ss_pred CCCCCcEEEEEEEEeccCCCCcccCCCcCceEEEEECCccceeEeccCCCCCCccCcEEEEEECCCCCEEEEEEEECCCC
Confidence 3456789999999999999998876 899999999999999999998 89999999999999987678899999999999
Q ss_pred CCCCeeEEEEEeCcccccccccCCCCCccCceeeceeeecCCcccccccceeeecCeEEEEEEEEecccccceEEEEEEE
Q 019735 252 SADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQNVESGELELELEW 331 (336)
Q Consensus 252 ~~dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l~~~~~~~~~~~~~~~g~~~~~~~l~l~~~~~G~i~l~l~~ 331 (336)
++|++||.+.|+|.++... +.....||+|. ......|+|+|+++|
T Consensus 84 ~~d~~lG~~~i~l~~l~~~-----------~~~~~~w~~L~------------------------~~~~~~G~i~l~l~~ 128 (136)
T 1wfj_A 84 TEDDAVGEATIPLEPVFVE-----------GSIPPTAYNVV------------------------KDEEYKGEIWVALSF 128 (136)
T ss_dssp TTTCCSEEEEEESHHHHHH-----------SEEEEEEEEEE------------------------ETTEEEEEEEEEEEE
T ss_pred CCCceEEEEEEEHHHhccC-----------CCCCcEEEEee------------------------cCCccCEEEEEEEEE
Confidence 9999999999999998532 23456788631 234567999999999
Q ss_pred EeCC
Q 019735 332 MPLD 335 (336)
Q Consensus 332 ~~~~ 335 (336)
.|..
T Consensus 129 ~p~~ 132 (136)
T 1wfj_A 129 KPSG 132 (136)
T ss_dssp EECC
T ss_pred EeCC
Confidence 9975
No 16
>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1
Probab=99.86 E-value=1.3e-21 Score=159.34 Aligned_cols=126 Identities=29% Similarity=0.479 Sum_probs=107.9
Q ss_pred cceeEEEEEEEEEEEeeeecccCCCC-CCCcEEEEEECCeEEEeeeeCCCCCceeeceeeecccCCCCceEEEEEecCCC
Q 019735 173 VGMVEFIGLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHDTF 251 (336)
Q Consensus 173 ~g~~~~~g~L~V~v~~a~~L~~~~~~-~~dPyv~i~l~~~~~rT~~~~~t~nP~W~e~f~f~v~~~~~~L~v~V~d~~~~ 251 (336)
.+.....|.|.|+|++|++|+..+.. .+||||++++++++++|+++++++||+|||+|.|.+......|.|+|||++.+
T Consensus 6 ~~~~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~i~V~d~d~~ 85 (133)
T 2ep6_A 6 SGDVKDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDIHDVLEVTVFDEDGD 85 (133)
T ss_dssp CCSCCCSEEEEEEEEEEESCCCSSSSSCCCEEEEEEETTEEEECCCCSSCSSCCCCEEEEEEESCTTCEEEEEEEEEETT
T ss_pred ccccCCceEEEEEEEeeECCCCCCCCCCcCeEEEEEECCEEEEeeeecCCCCCccccEEEEEecCCCCEEEEEEEECCCC
Confidence 45667889999999999999998876 89999999999999999999999999999999999987667899999999999
Q ss_pred CCCCeeEEEEEeCcccccccccCCCCCccCceeeceeeecCCcccccccceeeecCeEEEEEEEEecccccceEEEEEEE
Q 019735 252 SADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQNVESGELELELEW 331 (336)
Q Consensus 252 ~~dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l~~~~~~~~~~~~~~~g~~~~~~~l~l~~~~~G~i~l~l~~ 331 (336)
++|++||++.++|.++..+ ...||+|.+.. ......|+|+|+++|
T Consensus 86 ~~~~~lG~~~i~l~~l~~~--------------~~~w~~L~~~~---------------------~~~~~~G~i~l~i~~ 130 (133)
T 2ep6_A 86 KPPDFLGKVAIPLLSIRDG--------------QPNCYVLKNKD---------------------LEQAFKGVIYLEMDL 130 (133)
T ss_dssp EEEEECCBCEEEGGGCCSS--------------CCEECCCBCSC---------------------TTSCCSSEEEEEEEE
T ss_pred CCCCeeEEEEEEHHHccCC--------------CceEEEeecCC---------------------CCCccceEEEEEEEE
Confidence 8999999999999998421 13799865421 123467999999998
Q ss_pred Ee
Q 019735 332 MP 333 (336)
Q Consensus 332 ~~ 333 (336)
+.
T Consensus 131 ~~ 132 (133)
T 2ep6_A 131 IY 132 (133)
T ss_dssp EE
T ss_pred Ee
Confidence 74
No 17
>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens}
Probab=99.86 E-value=1.6e-21 Score=163.21 Aligned_cols=123 Identities=23% Similarity=0.420 Sum_probs=101.0
Q ss_pred cceeEEEEEEEEEEEeeeecccCCC-----------CCCCcEEEEEECCeE-EEeeeeCCCCCceeeceeeecccCCCCc
Q 019735 173 VGMVEFIGLLKVKVVKGINLAIRDM-----------MSSDPYVVLRLGQQT-VQTTIVKSNLNPVWNEELMLSVPQEYGP 240 (336)
Q Consensus 173 ~g~~~~~g~L~V~v~~a~~L~~~~~-----------~~~dPyv~i~l~~~~-~rT~~~~~t~nP~W~e~f~f~v~~~~~~ 240 (336)
.++..+.|.|+|+|++|++|+..|. ..+||||++.+++++ .+|+++++|+||+|||+|.|.+.. ...
T Consensus 22 ~~~~~~~g~L~V~VieA~~L~~~D~~~~~~~f~~~~g~sDPYv~v~l~~~~~~kT~v~~ktlnP~WNE~F~f~v~~-~~~ 100 (157)
T 2fk9_A 22 SGTMKFNGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRVGQTSTKQKTNKPTYNEEFCANVTD-GGH 100 (157)
T ss_dssp --CCCEEEEEEEEEEEEECCCCCHHHHHTTTSSSSCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEE-ECE
T ss_pred chhccCccEEEEEEEEEECCCCccccccccccccCCCCCCeEEEEEECCEeeEEeeecCCCCCCccCcEEEEEcCC-CCE
Confidence 4577889999999999999998772 258999999998876 599999999999999999999865 368
Q ss_pred eEEEEEecCCCCCCCeeEEEEEeCcccccccccCCCCCccCceeeceeeecCCcccccccceeeecCeEEEEEEEEeccc
Q 019735 241 VKLEVFDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQNV 320 (336)
Q Consensus 241 L~v~V~d~~~~~~dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l~~~~~~~~~~~~~~~g~~~~~~~l~l~~~ 320 (336)
|.|+|||++.+++|++||.+.|+|.++..+.. .+...+.||+ |+
T Consensus 101 L~~~V~D~d~~~~dd~iG~~~i~l~~l~~~~~--------~~~~~~~W~~--------------------------L~-- 144 (157)
T 2fk9_A 101 LELAVFHETPLGYDHFVANCTLQFQELLRTTG--------ASDTFEGWVD--------------------------LE-- 144 (157)
T ss_dssp EEEEEEECCSSSSCEEEEEEEEEHHHHHHHHT--------TCSEEEEEEE--------------------------CB--
T ss_pred EEEEEEECCCCCCCCEEEEEEEEHHHhhcccC--------CCCcccEEEE--------------------------CC--
Confidence 99999999999999999999999999864310 1245677876 32
Q ss_pred ccceEEEEEEEE
Q 019735 321 ESGELELELEWM 332 (336)
Q Consensus 321 ~~G~i~l~l~~~ 332 (336)
+.|+|+|+++|.
T Consensus 145 ~~G~i~l~l~~~ 156 (157)
T 2fk9_A 145 PEGKVFVVITLT 156 (157)
T ss_dssp SSCEEEEEEEEC
T ss_pred CCcEEEEEEEEE
Confidence 378999999873
No 18
>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A*
Probab=99.86 E-value=8.8e-21 Score=157.13 Aligned_cols=125 Identities=27% Similarity=0.508 Sum_probs=102.7
Q ss_pred cceeEEEEEEEEEEEeeeecccCCCC-CCCcEEEEEECCeEEEeeeeCCCCCceeeceeeecccCCCCceEEEEEecCCC
Q 019735 173 VGMVEFIGLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHDTF 251 (336)
Q Consensus 173 ~g~~~~~g~L~V~v~~a~~L~~~~~~-~~dPyv~i~l~~~~~rT~~~~~t~nP~W~e~f~f~v~~~~~~L~v~V~d~~~~ 251 (336)
.|+..+.|.|.|+|++|++|+..+.. .+||||+++++.+.++|+++++++||.|||+|.|.+......|.|+|||++.+
T Consensus 10 ~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~l~~~v~d~d~~ 89 (148)
T 3kwu_A 10 DGTSKWSAKISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFECHNSSDRIKVRVLDEDDD 89 (148)
T ss_dssp -----CCEEEEEEEEEEESCCCCSTTSCCCEEEEEEETTEEEECCCCCSCSSCEEEEEEEEEECSTTCEEEEEEEECCCS
T ss_pred ccccccccEEEEEEEeeeCCCCCCCCCCcCeEEEEEECCEEEECCccCCCCCCCcccEEEEEecCCCCEEEEEEEECCCC
Confidence 46777899999999999999998876 89999999999999999999999999999999999987668899999999986
Q ss_pred -----------CCCCeeEEEEEeCcccccccccCCCCCccCceeeceeeecCCcccccccceeeecCeEEEEEEEEeccc
Q 019735 252 -----------SADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQNV 320 (336)
Q Consensus 252 -----------~~dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l~~~~~~~~~~~~~~~g~~~~~~~l~l~~~ 320 (336)
++|++||++.++|.++. ...+.||+|.... ....
T Consensus 90 ~~~~~~~~~~~~~~~~lG~~~i~l~~l~--------------~~~~~w~~L~~~~---------------------~~~~ 134 (148)
T 3kwu_A 90 IKSRVKQRFKRESDDFLGQTIIEVRTLS--------------GEMDVWYNLDKRT---------------------DKSA 134 (148)
T ss_dssp HHHHHHTTTSSCSSEEEEEEEEEGGGCC--------------SEEEEEEECBCSS---------------------TTCC
T ss_pred ccccccccccCCCCccEEEEEEEHHHCc--------------CCCCEEEEcccCC---------------------CCCC
Confidence 78999999999999872 1346899864311 0223
Q ss_pred ccceEEEEEEEE
Q 019735 321 ESGELELELEWM 332 (336)
Q Consensus 321 ~~G~i~l~l~~~ 332 (336)
..|+|+|+|+|.
T Consensus 135 ~~G~i~l~l~~e 146 (148)
T 3kwu_A 135 VSGAIRLHISVE 146 (148)
T ss_dssp CCCEEEEEEEEE
T ss_pred CceEEEEEEEEE
Confidence 568999988874
No 19
>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=7.7e-21 Score=155.92 Aligned_cols=124 Identities=23% Similarity=0.336 Sum_probs=102.7
Q ss_pred EEEEEEEEEEeeeecccCCCCCCCcEEEEEECCeEEEeeeeCCCCCceeeceeeecccC----CCCceEEEEEecCCCCC
Q 019735 178 FIGLLKVKVVKGINLAIRDMMSSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQ----EYGPVKLEVFDHDTFSA 253 (336)
Q Consensus 178 ~~g~L~V~v~~a~~L~~~~~~~~dPyv~i~l~~~~~rT~~~~~t~nP~W~e~f~f~v~~----~~~~L~v~V~d~~~~~~ 253 (336)
..|.|.|+|++|++|+..+...+||||+++++.++++|+++++++||+|||+|.|.+.. ....|.|+|||++.+++
T Consensus 5 ~~g~L~v~v~~a~~L~~~~~g~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~~l~i~V~d~d~~~~ 84 (140)
T 2dmh_A 5 SSGMLRVIVESASNIPKTKFGKPDPIVSVIFKDEKKKTKKVDNELNPVWNEILEFDLRGIPLDFSSSLGIIVKDFETIGQ 84 (140)
T ss_dssp BCCEEEEEEEEEESCCCCSSSCCCEEEEEECSSCEEECCCCCSCSSCEEEEEEEEECSSCCCCTTCEEEEEEEETTCSSS
T ss_pred CCcEEEEEEEEeeCCCCCCCCCCCeEEEEEECCEeEEeeeecCCCCCccCcEEEEEecccccCCCCEEEEEEEECCCCCC
Confidence 46889999999999998877778999999999999999999999999999999999864 35789999999999999
Q ss_pred CCeeEEEEEeCcccccccccCCCCCccCceeeceeee---cCCcccccccceeeecCeEEEEEEEEecccccceEEEEEE
Q 019735 254 DDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLK---SDDNALLEDSTINIIDGKVKQKISLKLQNVESGELELELE 330 (336)
Q Consensus 254 dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~---l~~~~~~~~~~~~~~~g~~~~~~~l~l~~~~~G~i~l~l~ 330 (336)
|++||++.++|.++.. +...+.||+ +.+ ..+ ....|+|+|+++
T Consensus 85 ~~~lG~~~i~l~~l~~------------~~~~~~w~~l~~l~~-----------~~~-----------~~~~G~l~l~~~ 130 (140)
T 2dmh_A 85 NKLIGTATVALKDLTG------------DQSRSLPYKLISLLN-----------EKG-----------QDTGATIDLVIG 130 (140)
T ss_dssp CCCCEEEEEEGGGTCS------------SSCEEEEEEEEEEEC-----------TTC-----------CEEEEEEEEEEE
T ss_pred CceEEEEEEEHHHhcc------------CCCceeEEeeeeccC-----------CCC-----------CCCCCEEEEEEE
Confidence 9999999999999853 234566875 211 001 123599999999
Q ss_pred EEeCC
Q 019735 331 WMPLD 335 (336)
Q Consensus 331 ~~~~~ 335 (336)
|.|.+
T Consensus 131 ~~p~~ 135 (140)
T 2dmh_A 131 YDPPS 135 (140)
T ss_dssp ECCCB
T ss_pred EECCC
Confidence 99865
No 20
>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1
Probab=99.85 E-value=6.6e-21 Score=155.81 Aligned_cols=119 Identities=24% Similarity=0.495 Sum_probs=99.5
Q ss_pred eEEEEEEEEEEEeeeecccCCCC-C-----------CCcEEEEEECCeE-EEeeeeCCCCCceeeceeeecccCCCCceE
Q 019735 176 VEFIGLLKVKVVKGINLAIRDMM-S-----------SDPYVVLRLGQQT-VQTTIVKSNLNPVWNEELMLSVPQEYGPVK 242 (336)
Q Consensus 176 ~~~~g~L~V~v~~a~~L~~~~~~-~-----------~dPyv~i~l~~~~-~rT~~~~~t~nP~W~e~f~f~v~~~~~~L~ 242 (336)
..+.|.|+|+|++|++|+..+.. . +||||++.+++.. .+|+++.+++||+|||+|.|.+... ..|.
T Consensus 2 ~~~~g~L~v~v~~a~~L~~~d~~~~~~~g~~~~~~~~DPyv~v~l~~~~~~~T~~~~~t~nP~WnE~f~f~v~~~-~~L~ 80 (136)
T 1gmi_A 2 VVFNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTDVCNG-RKIE 80 (136)
T ss_dssp CCEEEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEEE-CEEE
T ss_pred cccceEEEEEEEeCcCCCCcccccccccccccCCcCcCcEEEEEECCeEeeeeeEECCCcCCccCCEEEEEecCC-CEEE
Confidence 35789999999999999987743 3 8999999998766 5999999999999999999998765 7899
Q ss_pred EEEEecCCCCCCCeeEEEEEeCcccccccccCCCCCccCceeeceeeecCCcccccccceeeecCeEEEEEEEEeccccc
Q 019735 243 LEVFDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQNVES 322 (336)
Q Consensus 243 v~V~d~~~~~~dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l~~~~~~~~~~~~~~~g~~~~~~~l~l~~~~~ 322 (336)
|+|||++.+++|++||.+.++|.++.... ....+.||+ ++ +.
T Consensus 81 ~~V~d~d~~~~dd~iG~~~i~l~~l~~~~----------~~~~~~w~~--------------------------L~--~~ 122 (136)
T 1gmi_A 81 LAVFHDAPIGYDDFVANCTIQFEELLQNG----------SRHFEDWID--------------------------LE--PE 122 (136)
T ss_dssp EEEEECCSSSSCEEEEEEEEEHHHHTSTT----------CSEEEEEEE--------------------------CB--SS
T ss_pred EEEEeCCCCCCCCEEEEEEEEHHHhcccC----------CCCccEEEE--------------------------cC--CC
Confidence 99999999999999999999999986421 123466765 32 47
Q ss_pred ceEEEEEEEEe
Q 019735 323 GELELELEWMP 333 (336)
Q Consensus 323 G~i~l~l~~~~ 333 (336)
|+|+|+++|.+
T Consensus 123 G~i~l~l~~~~ 133 (136)
T 1gmi_A 123 GKVYVIIDLSG 133 (136)
T ss_dssp CEEEEEEEEEE
T ss_pred eEEEEEEEEEe
Confidence 99999999976
No 21
>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A
Probab=99.84 E-value=1.8e-20 Score=156.10 Aligned_cols=129 Identities=31% Similarity=0.545 Sum_probs=99.6
Q ss_pred EEEEEEEEEEeeeecccCCCC-CCCcEEEEEECC------eEEEeeeeCCCCCceeeceeeecccCCCCceEEEEEecCC
Q 019735 178 FIGLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQ------QTVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHDT 250 (336)
Q Consensus 178 ~~g~L~V~v~~a~~L~~~~~~-~~dPyv~i~l~~------~~~rT~~~~~t~nP~W~e~f~f~v~~~~~~L~v~V~d~~~ 250 (336)
..|.|+|+|++|++|+..+.. .+||||++++.. ..++|+++++++||+|||+|.|.+......|.|+|||++.
T Consensus 18 ~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~l~~~V~d~d~ 97 (153)
T 3b7y_A 18 NSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFRVHPQQHRLLFEVFDENR 97 (153)
T ss_dssp TCEEEEEEEEEEESCC-------CCEEEEEEEEETTTEEEEEEECCCCSSCSSCCCCEEEEEEECTTTCEEEEEEEECCS
T ss_pred CccEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCccceeeeCccccCCCCCCCCCEEEEEecCCCCEEEEEEEECCC
Confidence 468899999999999998876 889999999953 5789999999999999999999998766789999999999
Q ss_pred CCCCCeeEEEEEeCcccccccccCCCCCccCceeeceeeecCCcccccccceeeecCeEEEEEEEEecccccceEEEEEE
Q 019735 251 FSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQNVESGELELELE 330 (336)
Q Consensus 251 ~~~dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l~~~~~~~~~~~~~~~g~~~~~~~l~l~~~~~G~i~l~l~ 330 (336)
+++|++||++.|+|.++..+.... .......||+|.... -.....|+|+|+++
T Consensus 98 ~~~d~~iG~~~i~l~~l~~~~~~~------~~~~~~~w~~L~~~~---------------------~~~~~~G~i~l~l~ 150 (153)
T 3b7y_A 98 LTRDDFLGQVDVPLYPLPTENPRL------ERPYTFKDFVLHPRS---------------------HKSRVKGYLRLKMT 150 (153)
T ss_dssp SSCCEEEEEEEEECCSCCBCCTTS------CCCCCCEEEECBCSS---------------------TTCCCCSEEEEEEE
T ss_pred CcCCCeeEEEEEEHHHcccCCCcc------ccccccccccccccc---------------------CCCCcceEEEEEEE
Confidence 999999999999999986542110 011235799864411 02245799999999
Q ss_pred EEe
Q 019735 331 WMP 333 (336)
Q Consensus 331 ~~~ 333 (336)
|+|
T Consensus 151 ~~P 153 (153)
T 3b7y_A 151 YLP 153 (153)
T ss_dssp ECC
T ss_pred EeC
Confidence 987
No 22
>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus}
Probab=99.84 E-value=2.3e-20 Score=159.34 Aligned_cols=129 Identities=32% Similarity=0.548 Sum_probs=96.2
Q ss_pred EEEEEEEEEeeeecccCCCC-CCCcEEEEEECC------eEEEeeeeCCCCCceeeceeeecccCCCCceEEEEEecCCC
Q 019735 179 IGLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQ------QTVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHDTF 251 (336)
Q Consensus 179 ~g~L~V~v~~a~~L~~~~~~-~~dPyv~i~l~~------~~~rT~~~~~t~nP~W~e~f~f~v~~~~~~L~v~V~d~~~~ 251 (336)
.|.|.|+|++|++|+..+.. .+||||+++++. ..++|+++++++||+|||.|.|.+......|.|+|||++.+
T Consensus 7 ~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~L~~~V~d~d~~ 86 (176)
T 3m7f_B 7 TRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRVLPQRHRILFEVFDENRL 86 (176)
T ss_dssp CEEEEEEEEEEESCC---CCCCCCEEEEEEEEETTTEEEEEEECCCCSSCSSCEEEEEEEEEECTTTCEEEEEEEECC--
T ss_pred cEEEEEEEEEeeCCCCcCCCCCcCcEEEEEEECCCCCcccceeCceECCCCCCcccceEEEEEcCCCCEEEEEEEECCCC
Confidence 68999999999999998876 899999999964 57899999999999999999999987667899999999999
Q ss_pred CCCCeeEEEEEeCcccccccccCCCCCccCceeeceeeecCCcccccccceeeecCeEEEEEEEEecccccceEEEEEEE
Q 019735 252 SADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQNVESGELELELEW 331 (336)
Q Consensus 252 ~~dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l~~~~~~~~~~~~~~~g~~~~~~~l~l~~~~~G~i~l~l~~ 331 (336)
++|++||.+.|+|..+........ ......||+|..... .....|+|+|+|.|
T Consensus 87 ~~d~~lG~~~i~l~~l~~~~~~~~------~~~~~~w~~L~~~~~---------------------~~~~~G~l~l~l~~ 139 (176)
T 3m7f_B 87 TRDDFLGQVDVPLYPLPTENPRME------RPYTFKDFVLHPRSH---------------------KSRVKGYLRLKMTY 139 (176)
T ss_dssp --CEEEEEEEEESCSCCBC------------CCCCEEEECBCSST---------------------TCCCCSEEEEEEEE
T ss_pred CCCcEEEEEEEEHHHccccCCccc------ccccccEEEccccCC---------------------CCccCEEEEEEEEE
Confidence 999999999999999864321100 011226888644111 22357999999999
Q ss_pred EeC
Q 019735 332 MPL 334 (336)
Q Consensus 332 ~~~ 334 (336)
+|.
T Consensus 140 ~p~ 142 (176)
T 3m7f_B 140 LPK 142 (176)
T ss_dssp CC-
T ss_pred EeC
Confidence 874
No 23
>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1
Probab=99.81 E-value=2.2e-19 Score=152.86 Aligned_cols=129 Identities=21% Similarity=0.344 Sum_probs=101.4
Q ss_pred EEEEEEEEEEeeeecc-cCCCCCCCcEEEEEECCeEEEeeeeCCCCCceeeceeeecccCCCCceEEEEEecCCCCCCCe
Q 019735 178 FIGLLKVKVVKGINLA-IRDMMSSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHDTFSADDI 256 (336)
Q Consensus 178 ~~g~L~V~v~~a~~L~-~~~~~~~dPyv~i~l~~~~~rT~~~~~t~nP~W~e~f~f~v~~~~~~L~v~V~d~~~~~~dd~ 256 (336)
..+.|.|+|++|++|+ ..+...+||||+++++++.++|+++++++||+|||+|.|.+.. ...|.|+|||++.+++|++
T Consensus 34 ~~~~L~V~V~~A~~L~~~~~~~~sDPYv~v~~~~~~~kT~v~~~tlnP~Wne~f~f~v~~-~~~L~~~V~D~d~~~~dd~ 112 (173)
T 2nq3_A 34 MKSQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVTP-VSKLHFRVWSHQTLKSDVL 112 (173)
T ss_dssp CCEEEEEEEEEEEECCCC--CCCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEECT-TCEEEEEEEECCSSSCCEE
T ss_pred CceEEEEEEEEeECCCCcccCCCCCeEEEEEECCEEeEccccCCCCCCeECCEEEEEeCC-CCEEEEEEEECCCCCCCce
Confidence 4678999999999999 5555579999999999999999999999999999999999864 6789999999999999999
Q ss_pred eEEEEEeCcccccccccCCCCCccCceeeceeeecCCcccccccceeeecCeEEEEEEEEecccccceEEEEEEEEeCC
Q 019735 257 MGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQNVESGELELELEWMPLD 335 (336)
Q Consensus 257 iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l~~~~~~~~~~~~~~~g~~~~~~~l~l~~~~~G~i~l~l~~~~~~ 335 (336)
||.+.++|.++..+... ....+..|++|... .-.....|+|.|.|.|++++
T Consensus 113 lG~~~i~l~~l~~~~~~-------~~~~~~~~~~L~~~---------------------~~~~~~~G~L~v~l~~l~~~ 163 (173)
T 2nq3_A 113 LGTAALDIYETLKSNNM-------KLEEVVVTLQLGGD---------------------KEPTETIGDLSICLDGLQLE 163 (173)
T ss_dssp EEEEEEEHHHHHHHTTT-------EESSEEEEEEEEES---------------------SCTTSEEEEEEEEEESEECC
T ss_pred EEEEEEEHHHhcccCCC-------CcceeEEEEECccC---------------------CCCCcccEEEEEEEeeeecc
Confidence 99999999998654210 01123457653220 00123579999999999875
No 24
>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1
Probab=99.81 E-value=8.3e-20 Score=146.93 Aligned_cols=89 Identities=22% Similarity=0.443 Sum_probs=78.7
Q ss_pred EEEEEEEEEeeeecccC---CC-CCCCcEEEEEECC---eEEEeeeeCCCCCceeeceeeecccC-CCCceEEEEEecCC
Q 019735 179 IGLLKVKVVKGINLAIR---DM-MSSDPYVVLRLGQ---QTVQTTIVKSNLNPVWNEELMLSVPQ-EYGPVKLEVFDHDT 250 (336)
Q Consensus 179 ~g~L~V~v~~a~~L~~~---~~-~~~dPyv~i~l~~---~~~rT~~~~~t~nP~W~e~f~f~v~~-~~~~L~v~V~d~~~ 250 (336)
.|.|.|+|++|++|+.. +. +.+||||++++++ ..++|+++++++||+|||+|.|.+.. ....|.|+|||++.
T Consensus 2 ~~~L~v~v~~a~~L~~~~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~d~ 81 (126)
T 1rlw_A 2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANY 81 (126)
T ss_dssp CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCEEEEEEEECCS
T ss_pred CcEEEEEEEeeeCCCCCCccccCCCCCCEEEEEEccCCCceEEccccCCCCCCcccceEEEEecCCCCCEEEEEEEECCC
Confidence 47899999999999984 43 3789999999974 78899999999999999999999954 56789999999998
Q ss_pred CCCCCeeEEEEEeCcccc
Q 019735 251 FSADDIMGEAEIDIQPLL 268 (336)
Q Consensus 251 ~~~dd~iG~~~i~l~~l~ 268 (336)
+ +|++||.+.++|.++.
T Consensus 82 ~-~~~~iG~~~i~l~~l~ 98 (126)
T 1rlw_A 82 V-MDETLGTATFTVSSMK 98 (126)
T ss_dssp S-CCEEEEEEEEEGGGSC
T ss_pred C-CCceeEEEEEEHHHcc
Confidence 7 5899999999999884
No 25
>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A
Probab=99.77 E-value=3.3e-18 Score=138.86 Aligned_cols=88 Identities=23% Similarity=0.419 Sum_probs=79.2
Q ss_pred EEEEEEEEeeeecccCCCC-CCCcEEEEEECC--eEEEeeeeCCCCCceeeceeeecccCCCCceEEEEEecCCCCC---
Q 019735 180 GLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQ--QTVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHDTFSA--- 253 (336)
Q Consensus 180 g~L~V~v~~a~~L~~~~~~-~~dPyv~i~l~~--~~~rT~~~~~t~nP~W~e~f~f~v~~~~~~L~v~V~d~~~~~~--- 253 (336)
..|+|+|++|++|+..+.. .+||||+++++. +.++|+++++++||+|||.|.|.+... ..|.|+|||++.+++
T Consensus 5 ~~L~V~v~~a~~L~~~d~~g~sDpyv~v~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~-~~l~~~v~d~d~~~~~~~ 83 (132)
T 3pyc_A 5 IKIRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDLYVGKT-DSITISVWNHKKIHKKQG 83 (132)
T ss_dssp EEEEEEEEEEESCCCCSTTCCCCEEEEEEETTTCCEEECCCCSSCSSCEEEEEEEEEEETT-CCEEEEEEEGGGTTSSTT
T ss_pred EEEEEEEEEeECCCCCCCCCCcCeEEEEEECCCCceEECCccCCCCCCCccCEEEEEeCCC-CEEEEEEEECCCCCCCCC
Confidence 4689999999999998876 899999999964 789999999999999999999998764 459999999999876
Q ss_pred CCeeEEEEEeCcccc
Q 019735 254 DDIMGEAEIDIQPLL 268 (336)
Q Consensus 254 dd~iG~~~i~l~~l~ 268 (336)
|++||++.+++..+.
T Consensus 84 d~~lG~~~i~l~~l~ 98 (132)
T 3pyc_A 84 AGFLGCVRLLSNAIS 98 (132)
T ss_dssp TTEEEEEEECHHHHH
T ss_pred CCceEEEEEeHHHhh
Confidence 899999999998874
No 26
>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus}
Probab=99.77 E-value=1.8e-18 Score=140.98 Aligned_cols=106 Identities=21% Similarity=0.311 Sum_probs=88.7
Q ss_pred eEEEEEEEEEEEeeeecccCCCCCCCcEEEEEE-----CCeEEEeeeeCCCCCceeeceeeec-ccC---CCCceEEEEE
Q 019735 176 VEFIGLLKVKVVKGINLAIRDMMSSDPYVVLRL-----GQQTVQTTIVKSNLNPVWNEELMLS-VPQ---EYGPVKLEVF 246 (336)
Q Consensus 176 ~~~~g~L~V~v~~a~~L~~~~~~~~dPyv~i~l-----~~~~~rT~~~~~t~nP~W~e~f~f~-v~~---~~~~L~v~V~ 246 (336)
....|.|.|.|++|++|+....+.+||||++++ ...+++|+++++++||+|||+|.|. +.. ....|.|+||
T Consensus 16 ~~~~~~L~V~V~~a~~L~~~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~~v~~~~l~~~~L~~~V~ 95 (134)
T 2b3r_A 16 SYRNGTLFIMVMHIKDLVTEDGADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYSGYSKETLRQRELQLSVL 95 (134)
T ss_dssp EEETTEEEEEEEEEECCCCTTSCCCCEEEEEEEESCSSSCCCEECCCCCSCSSCEEEEEEEEESCCHHHHTTCEEEEEEE
T ss_pred eecCCEEEEEEEEeeCCCCCCCCCCCeEEEEEEEcCCCCCceecCCcCcCCCCCCCccEEEECCcCHHHhCcCEEEEEEE
Confidence 335688999999999999733338999999999 4567899999999999999999999 653 3468999999
Q ss_pred ecCCCCCCCeeEEEEEeCcccccccccCCCCCccCceeeceeeecCC
Q 019735 247 DHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDD 293 (336)
Q Consensus 247 d~~~~~~dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l~~ 293 (336)
|++.++++++||++.++|.++.. +.....||+|.+
T Consensus 96 d~d~~~~~~~lG~~~i~l~~l~~------------~~~~~~W~~L~~ 130 (134)
T 2b3r_A 96 SAESLRENFFLGGITLPLKDFNL------------SKETVKWYQLTA 130 (134)
T ss_dssp ECCSSSCCEEEEEEEEEGGGSCT------------TSCEEEEEECBC
T ss_pred ECCCCCCCcEEEEEEEEhhhccC------------CCCcceeEECCC
Confidence 99999999999999999999843 234678998654
No 27
>3rdl_A Protein kinase C alpha type; protein kinase PKC, transferase; 1.50A {Rattus norvegicus} PDB: 3gpe_A 3rdj_A 3twy_A 1dsy_A* 4dnl_A* 2uzp_A*
Probab=99.76 E-value=1.5e-18 Score=141.46 Aligned_cols=110 Identities=28% Similarity=0.417 Sum_probs=93.4
Q ss_pred EEEEEEEEEEeeeecccCCCC-CCCcEEEEEE-----CCeEEEeeeeCCCCCceeeceeeecccC--CCCceEEEEEecC
Q 019735 178 FIGLLKVKVVKGINLAIRDMM-SSDPYVVLRL-----GQQTVQTTIVKSNLNPVWNEELMLSVPQ--EYGPVKLEVFDHD 249 (336)
Q Consensus 178 ~~g~L~V~v~~a~~L~~~~~~-~~dPyv~i~l-----~~~~~rT~~~~~t~nP~W~e~f~f~v~~--~~~~L~v~V~d~~ 249 (336)
..|.|.|.|++|++|+..+.. .+||||++++ +...++|+++++++||.|||.|.|.+.. ....|.|+|||++
T Consensus 14 ~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~l~i~v~d~d 93 (137)
T 3rdl_A 14 TDEKLHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLKPSDKDRRLSVEIWDWD 93 (137)
T ss_dssp ETTEEEEEEEEEESCCCCSTTSCCCEEEEEEEECCTTCCCCEECCCCCSCSSCEEEEEEEEECCGGGGGCEEEEEEEECC
T ss_pred cCCEEEEEEEEeeCCCCCCCCCCCCeeEEEEEEcCCCCCeeecCceEcCCCCCCcccEEEEEcCchhcCCEEEEEEEECC
Confidence 358999999999999998876 8999999999 5677899999999999999999999865 2357999999999
Q ss_pred CCCCCCeeEEEEEeCcccccccccCCCCCccCceeeceeeecCCccccccc
Q 019735 250 TFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDS 300 (336)
Q Consensus 250 ~~~~dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l~~~~~~~~~ 300 (336)
.+++|++||.+.++|.++..+ ....||+|.+.......
T Consensus 94 ~~~~~~~iG~~~i~l~~l~~~-------------~~~~W~~L~~~~~g~~~ 131 (137)
T 3rdl_A 94 RTTRNDFMGSLSFGVSELMKM-------------PASGWYKLLNQEEGEYY 131 (137)
T ss_dssp SSSCCEEEEEEEEEHHHHHHS-------------CEEEEEECBCHHHHTTC
T ss_pred CCCCCceEEEEEEeHHHhccC-------------ccCceEECcCccccccc
Confidence 999999999999999998532 15789998765544443
No 28
>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0
Probab=99.75 E-value=3.4e-18 Score=142.44 Aligned_cols=112 Identities=20% Similarity=0.341 Sum_probs=92.1
Q ss_pred eEEEEEEEEEEEeeeecccCCCCCCCcEEEEEE-----CCeEEEeeeeCCCCCceeeceeeeccc--CCCCceEEEEEec
Q 019735 176 VEFIGLLKVKVVKGINLAIRDMMSSDPYVVLRL-----GQQTVQTTIVKSNLNPVWNEELMLSVP--QEYGPVKLEVFDH 248 (336)
Q Consensus 176 ~~~~g~L~V~v~~a~~L~~~~~~~~dPyv~i~l-----~~~~~rT~~~~~t~nP~W~e~f~f~v~--~~~~~L~v~V~d~ 248 (336)
....|.|.|+|++|++|+..+.+.+||||++++ ...+++|+++++++||+|||+|.|.+. .....|.|+|||+
T Consensus 23 ~~~~~~L~V~v~~a~~L~~~d~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~ 102 (153)
T 3fbk_A 23 DAQDRVLLLHIIEGKGLISKQPGTCDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHFFFPVQEEDDQKRLLVTVWNR 102 (153)
T ss_dssp EESSSEEEEEEEEEESCCCCSSSCCCEEEEEEEESCSCCTTCEECCCCTTCSSCEEEEEEEEECCGGGTTSEEEEEEEEC
T ss_pred ECCCCEEEEEEEEeeCCCCCCCCCCCEEEEEEEEcCCCCccEEeccccCCCCCCccccEEEEecccHHhCCEEEEEEEeC
Confidence 344689999999999999988558999999999 335789999999999999999999984 3445699999999
Q ss_pred CCCCC-CCeeEEEEEeCcccccccccCCCCCccCceeeceeeecCCccccc
Q 019735 249 DTFSA-DDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLE 298 (336)
Q Consensus 249 ~~~~~-dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l~~~~~~~ 298 (336)
+.+++ |++||++.++|.++... +.....||+|.+.....
T Consensus 103 d~~~~~d~~lG~~~i~l~~l~~~-----------~~~~~~W~~L~~~~~g~ 142 (153)
T 3fbk_A 103 ASQSRQSGLIGCMSFGVKSLLTP-----------DKEISGWYYLLGEHLGR 142 (153)
T ss_dssp CSSGGGCEEEEEEEEEHHHHTC-------------CCEEEEEECBCTTGGG
T ss_pred CCCCCCCcEEEEEEEEHHHhcCC-----------CCccccEEECCChhhcc
Confidence 99877 99999999999998521 34567899987655443
No 29
>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens}
Probab=99.75 E-value=1.6e-18 Score=145.02 Aligned_cols=102 Identities=13% Similarity=0.185 Sum_probs=87.9
Q ss_pred EEEEEEEEEeeeecccCCCC-CCCcEEEEEECC------eEEEeeeeCCCCCceeeceeeecccC---CCCceEEEEEec
Q 019735 179 IGLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQ------QTVQTTIVKSNLNPVWNEELMLSVPQ---EYGPVKLEVFDH 248 (336)
Q Consensus 179 ~g~L~V~v~~a~~L~~~~~~-~~dPyv~i~l~~------~~~rT~~~~~t~nP~W~e~f~f~v~~---~~~~L~v~V~d~ 248 (336)
.+.|+|.|++|++|+..+.. .+||||++++.. .++||+++++++||+|||+|.|.+.. ....|.|+|||+
T Consensus 42 ~~~L~V~Vi~a~~L~~~d~~g~sDPyVkv~l~~~~~~~~~~~kT~v~~~tlnP~wnE~F~f~v~~~~l~~~~L~~~V~d~ 121 (155)
T 2z0u_A 42 NKQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEVFWVSMSYPALHQKTLRVDVCTT 121 (155)
T ss_dssp TTEEEEEEEEEECGGGTCCSCCSEEEEEEEEESCSCHHHHEEECCCEECCSSEEEEEEEEEECCHHHHHHCEEEEEEEEE
T ss_pred CCEEEEEEEEccCcCCcccCCCCCEEEEEEEecCCCCCccceeCCcCCCCCCCccccEEEEEcCHHHhCcCEEEEEEEEC
Confidence 47899999999999999876 899999999954 27899999999999999999999865 246799999999
Q ss_pred CCCCCCCeeEEEEEeCcccccccccCCCCCccCceeeceeeec
Q 019735 249 DTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKS 291 (336)
Q Consensus 249 ~~~~~dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l 291 (336)
+.++++++||++.++|.++.. .+.....||+|
T Consensus 122 d~~~~~d~iG~~~i~l~~l~~-----------~~~~~~~W~~L 153 (155)
T 2z0u_A 122 DRSHLEECLGGAQISLAEVCR-----------SGERSTRWYNL 153 (155)
T ss_dssp CTTSCEEEEEEEEEECTTSCT-----------TCCCEEEEEEE
T ss_pred CCCCCCcEEEEEEEEHHHccC-----------CCCccccceEc
Confidence 999999999999999998842 13346789874
No 30
>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2
Probab=99.75 E-value=5.1e-18 Score=141.19 Aligned_cols=103 Identities=29% Similarity=0.497 Sum_probs=89.3
Q ss_pred EEEEEEEEEeeeecccCCCC-CCCcEEEEEE---CCeEEEeeeeCCCCCceeeceeeecccC---CCCceEEEEEecCCC
Q 019735 179 IGLLKVKVVKGINLAIRDMM-SSDPYVVLRL---GQQTVQTTIVKSNLNPVWNEELMLSVPQ---EYGPVKLEVFDHDTF 251 (336)
Q Consensus 179 ~g~L~V~v~~a~~L~~~~~~-~~dPyv~i~l---~~~~~rT~~~~~t~nP~W~e~f~f~v~~---~~~~L~v~V~d~~~~ 251 (336)
.+.|+|+|++|++|+..+.. .+||||++++ +...++|+++++++||+|||+|.|.+.. ....|.|+|||++.+
T Consensus 41 ~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~~ 120 (152)
T 1rsy_A 41 NNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRF 120 (152)
T ss_dssp TTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSCEECCCCTTCSSCEEEEEEEECCCHHHHTTCEEEEEEEECCSS
T ss_pred CCEEEEEEEEeECCCCccCCCCcCeEEEEEEEcCCCceEeccccCCCCCCcCcccEEEeecHHHcCCCEEEEEEEECCCC
Confidence 47899999999999998876 8999999999 4567899999999999999999999864 357899999999999
Q ss_pred CCCCeeEEEEEeCcccccccccCCCCCccCceeeceeeecCC
Q 019735 252 SADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDD 293 (336)
Q Consensus 252 ~~dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l~~ 293 (336)
++|++||++.++|.++.. +.....||+|.+
T Consensus 121 ~~~~~iG~~~i~l~~l~~------------~~~~~~W~~L~~ 150 (152)
T 1rsy_A 121 SKHDIIGEFKVPMNTVDF------------GHVTEEWRDLQS 150 (152)
T ss_dssp SCCEEEEEEEEEGGGCCC------------SSCEEEEEECBC
T ss_pred CCCcEEEEEEEEchhccC------------CCCcceEEECCC
Confidence 999999999999998842 335678998643
No 31
>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A*
Probab=99.75 E-value=4.3e-18 Score=140.00 Aligned_cols=102 Identities=29% Similarity=0.500 Sum_probs=88.8
Q ss_pred EEEEEEEEEeeeecccCCCC-CCCcEEEEEE---CCeEEEeeeeCCCCCceeeceeeecccC---CCCceEEEEEecCCC
Q 019735 179 IGLLKVKVVKGINLAIRDMM-SSDPYVVLRL---GQQTVQTTIVKSNLNPVWNEELMLSVPQ---EYGPVKLEVFDHDTF 251 (336)
Q Consensus 179 ~g~L~V~v~~a~~L~~~~~~-~~dPyv~i~l---~~~~~rT~~~~~t~nP~W~e~f~f~v~~---~~~~L~v~V~d~~~~ 251 (336)
.+.|.|+|++|++|+..+.. .+||||++++ +.+.++|+++++++||+|||+|.|.+.. ....|.|+|||++.+
T Consensus 33 ~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~~ 112 (143)
T 3f04_A 33 NNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRF 112 (143)
T ss_dssp TTEEEEEEEEEECCCCBGGGBCCCEEEEEEEESCCSCCEECCCCCSCSSCEEEEEEEECCCHHHHTTCEEEEEEEECCSS
T ss_pred CCEEEEEEEEecCCCCCCCCCCcCcEEEEEEECCCCccEECccCcCCCCCcCcCeEEEeecHhhcCCCEEEEEEEeCCCC
Confidence 47899999999999998876 8999999999 5568899999999999999999999864 347899999999999
Q ss_pred CCCCeeEEEEEeCcccccccccCCCCCccCceeeceeeecC
Q 019735 252 SADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSD 292 (336)
Q Consensus 252 ~~dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l~ 292 (336)
++|++||++.++|.++.. +.....||+|.
T Consensus 113 ~~~~~iG~~~i~l~~l~~------------~~~~~~W~~L~ 141 (143)
T 3f04_A 113 SKHDIIGEFKVPMNTVDF------------GHVTEEWRDLQ 141 (143)
T ss_dssp SCCEEEEEEEEEGGGCCT------------TSCEEEEEECB
T ss_pred CCCceEEEEEEEHHHccC------------CCCcceEEECc
Confidence 999999999999998843 33567899764
No 32
>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus}
Probab=99.74 E-value=5.8e-18 Score=143.77 Aligned_cols=107 Identities=21% Similarity=0.318 Sum_probs=91.7
Q ss_pred EEEEEEEEEEeeeecccCCC--CCCCcEEEEEECC-----eEEEeeeeCCCCCceeeceeeecccCCCCceEEEEE-ecC
Q 019735 178 FIGLLKVKVVKGINLAIRDM--MSSDPYVVLRLGQ-----QTVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVF-DHD 249 (336)
Q Consensus 178 ~~g~L~V~v~~a~~L~~~~~--~~~dPyv~i~l~~-----~~~rT~~~~~t~nP~W~e~f~f~v~~~~~~L~v~V~-d~~ 249 (336)
..|.|.|+|++|++|+..+. ..+||||++++.. ..++|+++++++||+|||+|.|.+......|.|+|| |++
T Consensus 28 ~~~~L~V~v~~a~~L~~~d~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~L~~~V~~d~d 107 (171)
T 2q3x_A 28 KKGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVFDESPQGKVLQVIVWGDYG 107 (171)
T ss_dssp ETTEEEEEEEEEESCCCCC---CCCEEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEECSSCCTTEEEEEEEEEECS
T ss_pred CCCEEEEEEEEeeCCCCCCcCCCCCCceEEEEEECCCccccceeCccCCCCCCCCCCcEEEEEecCCCCEEEEEEEEcCC
Confidence 46889999999999999884 3899999999843 378999999999999999999999776788999999 999
Q ss_pred CCCCCCeeEEEEEeCcccccccccCCCCCccCceeeceeeecCCccc
Q 019735 250 TFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNAL 296 (336)
Q Consensus 250 ~~~~dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l~~~~~ 296 (336)
.+++|++||.+.++|.++.. +.....||+|.....
T Consensus 108 ~~~~d~~iG~~~i~l~~l~~------------~~~~~~W~~L~~~~~ 142 (171)
T 2q3x_A 108 RMDHKCFMGVAQILLEELDL------------SSMVIGWYKLFPPSS 142 (171)
T ss_dssp TTCSSEEEEEEEECGGGSCT------------TSCEEEEEECBCGGG
T ss_pred CCCCCCEEEEEEEEHHHccc------------CCCcceeEECCCccc
Confidence 99999999999999999842 234678999876443
No 33
>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2
Probab=99.74 E-value=4.4e-18 Score=141.05 Aligned_cols=102 Identities=31% Similarity=0.470 Sum_probs=88.8
Q ss_pred EEEEEEEEEeeeecccCCCC-CCCcEEEEEEC-----CeEEEeeeeCCCCCceeeceeeecccCC--CCceEEEEEecCC
Q 019735 179 IGLLKVKVVKGINLAIRDMM-SSDPYVVLRLG-----QQTVQTTIVKSNLNPVWNEELMLSVPQE--YGPVKLEVFDHDT 250 (336)
Q Consensus 179 ~g~L~V~v~~a~~L~~~~~~-~~dPyv~i~l~-----~~~~rT~~~~~t~nP~W~e~f~f~v~~~--~~~L~v~V~d~~~ 250 (336)
.+.|.|+|++|++|+..+.. .+||||++++. ...++|+++++++||+|||+|.|.+... ...|.|+|||++.
T Consensus 30 ~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d~ 109 (149)
T 1a25_A 30 REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDL 109 (149)
T ss_dssp SSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGGGGCEEEEEEEECCS
T ss_pred CCEEEEEEEEeeCCCCCCCCCCcCeEEEEEEECCCCCcceEecceeCCCCCCcCCcEEEEEeccccCCCEEEEEEEECCC
Confidence 47899999999999998876 89999999995 4678999999999999999999998752 3579999999999
Q ss_pred CCCCCeeEEEEEeCcccccccccCCCCCccCceeeceeeecCC
Q 019735 251 FSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDD 293 (336)
Q Consensus 251 ~~~dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l~~ 293 (336)
+++|++||++.|+|.++..+ ..+.||+|.+
T Consensus 110 ~~~~~~iG~~~i~l~~l~~~-------------~~~~W~~L~~ 139 (149)
T 1a25_A 110 TSRNDFMGSLSFGISELQKA-------------GVDGWFKLLS 139 (149)
T ss_dssp SSCCEEEEEEEEEHHHHTTC-------------CEEEEEECBC
T ss_pred CCCCCEEEEEEEEHHHhCcC-------------ccCCeEEccC
Confidence 99999999999999998521 2678998655
No 34
>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2
Probab=99.74 E-value=8.2e-18 Score=135.72 Aligned_cols=100 Identities=22% Similarity=0.419 Sum_probs=81.7
Q ss_pred EEEEEEEEEeeeecccCCCC-CCCcEEEEEE-----CCeEEEeeeeCCCCCceeeceeeecccC----CCCceEEEEEec
Q 019735 179 IGLLKVKVVKGINLAIRDMM-SSDPYVVLRL-----GQQTVQTTIVKSNLNPVWNEELMLSVPQ----EYGPVKLEVFDH 248 (336)
Q Consensus 179 ~g~L~V~v~~a~~L~~~~~~-~~dPyv~i~l-----~~~~~rT~~~~~t~nP~W~e~f~f~v~~----~~~~L~v~V~d~ 248 (336)
.|.|.|+|++|++|+..+.. .+||||++++ +...++|+++++++||+|||+|.|.+.. ....|.|+|||+
T Consensus 17 ~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~~~V~d~ 96 (129)
T 2bwq_A 17 GHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQ 96 (129)
T ss_dssp TTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGGGGGGCEEEEEEEEC
T ss_pred CCEEEEEEEEeeCCCCCCCCCCCCCEEEEEEecCCCCCcceecccccCCCCCccccEEEEccCCHHHhcCCeEEEEEEEC
Confidence 47899999999999998876 7899999999 4578999999999999999999999532 346899999999
Q ss_pred CCCCC--CCeeEEEEEeCcccccccccCCCCCccCceeeceeeec
Q 019735 249 DTFSA--DDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKS 291 (336)
Q Consensus 249 ~~~~~--dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l 291 (336)
+.+++ +++||.+.++|.++... + ..+||+|
T Consensus 97 d~~~~~~~~~lG~~~i~l~~l~~~-----------~--~~~W~~L 128 (129)
T 2bwq_A 97 ARVREEESEFLGEILIELETALLD-----------D--EPHWYKL 128 (129)
T ss_dssp -------CEEEEEEEEEGGGCCCS-----------S--CEEEEEC
T ss_pred CcCcCcCCceeEEEEEEccccCCC-----------c--CCccEEC
Confidence 99887 99999999999998531 1 5789975
No 35
>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=1.3e-17 Score=136.91 Aligned_cols=103 Identities=29% Similarity=0.461 Sum_probs=88.2
Q ss_pred EEEEEEEEEeeeecccCCCC-CCCcEEEEEEC---CeEEEeeeeCCCCCceeeceeeecccC----CCCceEEEEEecCC
Q 019735 179 IGLLKVKVVKGINLAIRDMM-SSDPYVVLRLG---QQTVQTTIVKSNLNPVWNEELMLSVPQ----EYGPVKLEVFDHDT 250 (336)
Q Consensus 179 ~g~L~V~v~~a~~L~~~~~~-~~dPyv~i~l~---~~~~rT~~~~~t~nP~W~e~f~f~v~~----~~~~L~v~V~d~~~ 250 (336)
.+.|.|+|++|++|+..+.. .+||||++++. ...++|+++++++||+|||+|.|.+.. ....|.|+|||++.
T Consensus 25 ~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~d~ 104 (141)
T 2d8k_A 25 ESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKVVQRILYLQVLDYDR 104 (141)
T ss_dssp SCCEEEEEEEEESCCCCSSSSCCCEEEEEEEESCCSSEEECCCCTTCSSCCCCEEEEECSCCHHHHTTSEEEEEEEECCS
T ss_pred CCEEEEEEEEeECCCCCCCCCCCCcEEEEEEECCCCccEeCceEcCCCCCccccEEEECccCHHHcccCEEEEEEEECCC
Confidence 58899999999999998876 89999999993 468899999999999999999998632 35679999999999
Q ss_pred CCCCCeeEEEEEeCcccccccccCCCCCccCceeeceeeecCC
Q 019735 251 FSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDD 293 (336)
Q Consensus 251 ~~~dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l~~ 293 (336)
+++|++||++.++|.++.. +.....||+|..
T Consensus 105 ~~~~~~iG~~~i~l~~l~~------------~~~~~~W~~L~~ 135 (141)
T 2d8k_A 105 FSRNDPIGEVSIPLNKVDL------------TQMQTFWKDLKP 135 (141)
T ss_dssp SSSCEEEEEEEEETTTSCT------------TSCEEEEECCEE
T ss_pred CCCCcEEEEEEEEhhhhcC------------CCCccEEEECcC
Confidence 9999999999999999853 234678998643
No 36
>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2
Probab=99.72 E-value=2.1e-18 Score=141.62 Aligned_cols=103 Identities=28% Similarity=0.497 Sum_probs=87.7
Q ss_pred EEEEEEEEEeeeecccCCCC-CCCcEEEEEECCe--------------EEEeeeeCCCCCceeeceeeec-ccC---CCC
Q 019735 179 IGLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQQ--------------TVQTTIVKSNLNPVWNEELMLS-VPQ---EYG 239 (336)
Q Consensus 179 ~g~L~V~v~~a~~L~~~~~~-~~dPyv~i~l~~~--------------~~rT~~~~~t~nP~W~e~f~f~-v~~---~~~ 239 (336)
.|.|.|.|++|++|+..+.. .+||||++++... .++|+++++++||+|||.|.|. +.. ...
T Consensus 17 ~~~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~v~~~~l~~~ 96 (142)
T 1rh8_A 17 LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKK 96 (142)
T ss_dssp TTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEEEEECSCCHHHHTTC
T ss_pred CCEEEEEEEEecCCCCCCCCCCCCceEEEEEecCCCcccccccccccceeeccccCCCCCCCCCCEEEECCcCHHHccCC
Confidence 57899999999999998876 8999999999652 4689999999999999999997 542 456
Q ss_pred ceEEEEEecCCCCCCCeeEEEEEeCcccccccccCCCCCccCceeeceeeecCC
Q 019735 240 PVKLEVFDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDD 293 (336)
Q Consensus 240 ~L~v~V~d~~~~~~dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l~~ 293 (336)
.|.|+|||++.++++++||.+.|+|..+... .....||+|.+
T Consensus 97 ~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~------------~~~~~W~~L~~ 138 (142)
T 1rh8_A 97 TLEVTVWDYDRFSSNDFLGEVLIDLSSTSHL------------DNTPRWYPLKE 138 (142)
T ss_dssp EEEEEEEEECSSSCEEEEEEEEEETTSCGGG------------TTCCEEEECBC
T ss_pred EEEEEEEECCCCCCCceEEEEEEeccccccC------------CCCCeEEECCc
Confidence 8999999999999999999999999988532 23568998755
No 37
>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens}
Probab=99.72 E-value=5.8e-18 Score=140.16 Aligned_cols=104 Identities=27% Similarity=0.431 Sum_probs=88.4
Q ss_pred EEEEEEEEEeeeecccCC-CC-CCCcEEEEEEC-----CeEEEeeeeCCCCCceeeceeeecccCC---CCceEEEEEec
Q 019735 179 IGLLKVKVVKGINLAIRD-MM-SSDPYVVLRLG-----QQTVQTTIVKSNLNPVWNEELMLSVPQE---YGPVKLEVFDH 248 (336)
Q Consensus 179 ~g~L~V~v~~a~~L~~~~-~~-~~dPyv~i~l~-----~~~~rT~~~~~t~nP~W~e~f~f~v~~~---~~~L~v~V~d~ 248 (336)
.+.|.|.|++|++|+..+ .. .+||||++++. ..+++|+++++++||+|||+|.|.+... ...|.|+|||+
T Consensus 22 ~~~L~V~v~~a~~L~~~d~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~L~~~V~d~ 101 (148)
T 3fdw_A 22 TQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDETLRYEIPESLLAQRTLQFSVWHH 101 (148)
T ss_dssp TTEEEEEEEEEESCCCSBTTTTBCCEEEEEEEETCCSGGGEEECCCCSSCSSCEEEEEEEEECCSTTGGGCEEEEEEEEE
T ss_pred CCEEEEEEEEecCCCCcccCCCCCCeEEEEEEEcCCcccCccccccCCCCCCCcEeeEEEEEeChhHhCceEEEEEEEEC
Confidence 478999999999999887 33 89999999995 3478999999999999999999998763 34699999999
Q ss_pred CCCCCCCeeEEEEEeCcccccccccCCCCCccCceeeceeeecCCc
Q 019735 249 DTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDN 294 (336)
Q Consensus 249 ~~~~~dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l~~~ 294 (336)
+.+++|++||++.++|.++..+ .....||+|..+
T Consensus 102 d~~~~~~~iG~~~i~l~~l~~~------------~~~~~W~~L~~~ 135 (148)
T 3fdw_A 102 GRFGRNTFLGEAEIQMDSWKLD------------KKLDHCLPLHGK 135 (148)
T ss_dssp CGGGCEEEEEEEEEEHHHHHHH------------CCSEEEEECBCC
T ss_pred CCCcCCcEEEEEEEEccccccc------------CCccceEECcCc
Confidence 9999999999999999998533 235689987663
No 38
>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2
Probab=99.72 E-value=1.3e-17 Score=136.62 Aligned_cols=102 Identities=22% Similarity=0.417 Sum_probs=87.1
Q ss_pred EEEEEEEEEeeeecccCCCC-CCCcEEEEEE-----CCeEEEeeeeCCCCCceeeceeeecc-cC---CCCceEEEEEec
Q 019735 179 IGLLKVKVVKGINLAIRDMM-SSDPYVVLRL-----GQQTVQTTIVKSNLNPVWNEELMLSV-PQ---EYGPVKLEVFDH 248 (336)
Q Consensus 179 ~g~L~V~v~~a~~L~~~~~~-~~dPyv~i~l-----~~~~~rT~~~~~t~nP~W~e~f~f~v-~~---~~~~L~v~V~d~ 248 (336)
.+.|.|.|++|++|+..+.. .+||||++++ +...++|+++++++||+|||+|.|.+ .. ....|.|+|||+
T Consensus 20 ~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~ 99 (141)
T 1v27_A 20 GHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQ 99 (141)
T ss_dssp TTEEEEEEEEEESCCCCSSSCCCCEEEECCCSSCCSSSSCCBCCCCSSCSSCCCCCCCEECSCCTTGGGTCEEEEEEEEB
T ss_pred CCEEEEEEEEccCCCCcCCCCCCCCEEEEEEecCCCCCcceeCccccCCCCCccccEEEEccCCHHHhcCCEEEEEEEEC
Confidence 37899999999999998876 8899999998 35678999999999999999999995 32 346899999999
Q ss_pred CCCCC--CCeeEEEEEeCcccccccccCCCCCccCceeeceeeecCC
Q 019735 249 DTFSA--DDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDD 293 (336)
Q Consensus 249 ~~~~~--dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l~~ 293 (336)
+.+++ +++||.+.++|.++... + ...||+|..
T Consensus 100 d~~~~~~~~~lG~~~i~l~~l~~~-----------~--~~~W~~L~~ 133 (141)
T 1v27_A 100 ARVREEESEFLGEILIELETALLD-----------D--EPHWYKLQT 133 (141)
T ss_dssp CSSSSCCBCCCEEEEEEGGGCCCS-----------S--EEEEEECBC
T ss_pred CCCcCCCCceEEEEEEEccccCCC-----------C--CCceEECcc
Confidence 99887 99999999999987421 1 578998765
No 39
>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus}
Probab=99.72 E-value=5.9e-18 Score=137.99 Aligned_cols=90 Identities=30% Similarity=0.490 Sum_probs=80.0
Q ss_pred EEEEEEEEEeeeecccCCCC-CCCcEEEEEECC-----eEEEeeeeCCCCCceeeceeeecccCCC---CceEEEEEecC
Q 019735 179 IGLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQ-----QTVQTTIVKSNLNPVWNEELMLSVPQEY---GPVKLEVFDHD 249 (336)
Q Consensus 179 ~g~L~V~v~~a~~L~~~~~~-~~dPyv~i~l~~-----~~~rT~~~~~t~nP~W~e~f~f~v~~~~---~~L~v~V~d~~ 249 (336)
.|.|.|.|++|++|+..+.. .+||||++++.. .+++|+++++++||+|||+|.|.+.... ..|.|+|||++
T Consensus 15 ~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~~~V~d~~ 94 (138)
T 3n5a_A 15 ANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFDIPTEKLRETTIIITVMDKD 94 (138)
T ss_dssp TTEEEEEEEEEESCCCCBTTTBCCEEEEEEEEETTEEEEEEECCCCSSCSSCEEEEEEEEECCGGGGGGEEEEEEEEECC
T ss_pred CCeEEEEEEEeeCCCCcCCCCCcCeEEEEEEEeCCCccceEeCccccCCCCCcCcceEEEECChhhcCceEEEEEEEECC
Confidence 47899999999999998876 899999999953 4679999999999999999999986532 57999999999
Q ss_pred CCCCCCeeEEEEEeCcccc
Q 019735 250 TFSADDIMGEAEIDIQPLL 268 (336)
Q Consensus 250 ~~~~dd~iG~~~i~l~~l~ 268 (336)
.+++|++||++.++|..+.
T Consensus 95 ~~~~~~~lG~~~i~l~~~~ 113 (138)
T 3n5a_A 95 KLSRNDVIGKIYLSWKSGP 113 (138)
T ss_dssp SSSCCEEEEEEEESSSSCH
T ss_pred CCCCCcEEEEEEEccccCC
Confidence 9999999999999998753
No 40
>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2
Probab=99.72 E-value=6.5e-17 Score=132.35 Aligned_cols=100 Identities=21% Similarity=0.340 Sum_probs=82.9
Q ss_pred EEEEEEEEEeeeecccCCCC-CCCcEEEEEEC---C-eEEEeeeeCCCCCceeeceeeecccCC---CCceEEEEEecCC
Q 019735 179 IGLLKVKVVKGINLAIRDMM-SSDPYVVLRLG---Q-QTVQTTIVKSNLNPVWNEELMLSVPQE---YGPVKLEVFDHDT 250 (336)
Q Consensus 179 ~g~L~V~v~~a~~L~~~~~~-~~dPyv~i~l~---~-~~~rT~~~~~t~nP~W~e~f~f~v~~~---~~~L~v~V~d~~~ 250 (336)
.+.|+|.|++|++ .+.. .+||||++++. . ..++|+++++++||+|||+|.|.+... ...|.|+|||++.
T Consensus 25 ~~~L~V~v~~a~~---~d~~g~sDPyv~v~l~~~~~~~~~kT~v~~~tlnP~wnE~f~f~v~~~~l~~~~L~~~V~d~d~ 101 (138)
T 1wfm_A 25 KAELFVTRLEAVT---SNHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLRTCDR 101 (138)
T ss_dssp TTEEEEEEEEEEC---CCCSSCCCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEECCTTSSTTCEEEEEEEECCS
T ss_pred CCEEEEEEEEEEc---CCCCCCcceEEEEEEEcCCCcccEecccCcCCCCCcCCceEEEEecHHHcCCCEEEEEEEECCC
Confidence 4789999999993 4544 88999999993 2 357999999999999999999998652 4579999999999
Q ss_pred CCCCCeeEEEEEeCcccccccccCCCCCccCceeeceeeecCC
Q 019735 251 FSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDD 293 (336)
Q Consensus 251 ~~~dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l~~ 293 (336)
+++|++||++.++|.++.. +.....||+|..
T Consensus 102 ~~~dd~lG~~~i~l~~l~~------------~~~~~~W~~L~~ 132 (138)
T 1wfm_A 102 FSRHSVAGELRLGLDGTSV------------PLGAAQWGELKT 132 (138)
T ss_dssp SCTTSCSEEEEEESSSSSS------------CTTCCEEEECCC
T ss_pred CCCCcEEEEEEEEcccccC------------cccccceeeCcC
Confidence 9999999999999998842 224567998654
No 41
>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A*
Probab=99.71 E-value=1e-17 Score=140.38 Aligned_cols=115 Identities=30% Similarity=0.385 Sum_probs=88.8
Q ss_pred EEEEEEEEEeeeecccCCCC-CCCcEEEEEECC-----eEEEeeeeCCCCCceeeceeeecccCC---CCceEEEEEecC
Q 019735 179 IGLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQ-----QTVQTTIVKSNLNPVWNEELMLSVPQE---YGPVKLEVFDHD 249 (336)
Q Consensus 179 ~g~L~V~v~~a~~L~~~~~~-~~dPyv~i~l~~-----~~~rT~~~~~t~nP~W~e~f~f~v~~~---~~~L~v~V~d~~ 249 (336)
.|.|.|+|++|++|+..+.. .+||||++++.. ..++|+++++++||+|||+|.|.+... ...|.|+|||++
T Consensus 24 ~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~d 103 (159)
T 1tjx_A 24 AGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYD 103 (159)
T ss_dssp TTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEECC
T ss_pred CCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCceeceeeCceecCCCCCcccceEEEEcCHHHhCCcEEEEEEEECC
Confidence 57899999999999998876 899999999842 467999999999999999999998652 356999999999
Q ss_pred CCCCCCeeEEEEEeCcccccccccCCCCCccCceeeceeeecCC
Q 019735 250 TFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDD 293 (336)
Q Consensus 250 ~~~~dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l~~ 293 (336)
.+++|++||.+.|++..+-.+..+-.......+..+.+||+|..
T Consensus 104 ~~~~~~~iG~~~i~l~~~~~~~~~w~~l~~~~~~~~~~W~~L~~ 147 (159)
T 1tjx_A 104 KIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQV 147 (159)
T ss_dssp SSSCCEEEEEEEEETTCCHHHHHHHHHHHHSTTCCEEEEEECBC
T ss_pred CCCCCceEEEEEECCCCCCcHHHHHHHHHHCCCCeeeeEEECcC
Confidence 99999999999999986522110000000012345678888654
No 42
>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A
Probab=99.71 E-value=1.6e-17 Score=140.28 Aligned_cols=90 Identities=30% Similarity=0.444 Sum_probs=81.0
Q ss_pred EEEEEEEEEeeeecccCCCC-CCCcEEEEEECC-----eEEEeeeeCCCCCceeeceeeecccC---CCCceEEEEEecC
Q 019735 179 IGLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQ-----QTVQTTIVKSNLNPVWNEELMLSVPQ---EYGPVKLEVFDHD 249 (336)
Q Consensus 179 ~g~L~V~v~~a~~L~~~~~~-~~dPyv~i~l~~-----~~~rT~~~~~t~nP~W~e~f~f~v~~---~~~~L~v~V~d~~ 249 (336)
.+.|.|.|++|++|+..+.. .+||||++++.. ..++|+++++++||+|||+|.|.+.. ....|.|+|||++
T Consensus 36 ~~~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d 115 (166)
T 2cm5_A 36 QGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYD 115 (166)
T ss_dssp TTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEECC
T ss_pred CCEEEEEEEEeECCCCccCCCCCCcEEEEEEECCCCccceEeCCcccCCCCCcccceEEEEcchHhcCCCEEEEEEEECC
Confidence 58899999999999998876 899999999964 67899999999999999999999865 2458999999999
Q ss_pred CCCCCCeeEEEEEeCcccc
Q 019735 250 TFSADDIMGEAEIDIQPLL 268 (336)
Q Consensus 250 ~~~~dd~iG~~~i~l~~l~ 268 (336)
.++++++||.+.|+|.++.
T Consensus 116 ~~~~~~~iG~~~i~l~~~~ 134 (166)
T 2cm5_A 116 IGKSNDYIGGCQLGISAKG 134 (166)
T ss_dssp SSSCCEEEEEEEEETTCCH
T ss_pred CCCCCcEEEeEEEecccCC
Confidence 9999999999999998863
No 43
>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A
Probab=99.71 E-value=1.9e-17 Score=137.70 Aligned_cols=88 Identities=28% Similarity=0.424 Sum_probs=74.8
Q ss_pred EEEEEEEEEeeeecccCCCC-CCCcEEEEEE--CCe---EEEeeeeCCCCCceeeceeeecccCC---CCceEEEEEecC
Q 019735 179 IGLLKVKVVKGINLAIRDMM-SSDPYVVLRL--GQQ---TVQTTIVKSNLNPVWNEELMLSVPQE---YGPVKLEVFDHD 249 (336)
Q Consensus 179 ~g~L~V~v~~a~~L~~~~~~-~~dPyv~i~l--~~~---~~rT~~~~~t~nP~W~e~f~f~v~~~---~~~L~v~V~d~~ 249 (336)
.+.|.|.|++|++|+..+.. .+||||++++ +.. +++|+++++++||+|||+|.|.+... ...|.|+|||++
T Consensus 29 ~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~v~V~d~d 108 (153)
T 1w15_A 29 TNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCESLEEISVEFLVLDSE 108 (153)
T ss_dssp TTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEECCSSSSTTEEEEEEEEECC
T ss_pred CCEEEEEEEEeECCCCcCCCCCCCeEEEEEEEeCCeEeceEecCcccCCCCCeecceEEEECCHHHhCceEEEEEEEeCC
Confidence 57899999999999998876 8899999999 443 67999999999999999999998763 357999999999
Q ss_pred CCCCCCeeEEEEEeCcc
Q 019735 250 TFSADDIMGEAEIDIQP 266 (336)
Q Consensus 250 ~~~~dd~iG~~~i~l~~ 266 (336)
.++++++||.+.++|.+
T Consensus 109 ~~~~~~~lG~~~i~l~~ 125 (153)
T 1w15_A 109 RGSRNEVIGRLVLGATA 125 (153)
T ss_dssp TTSCCEEEEEEEESTTC
T ss_pred CCCCCcEEEEEEECCCC
Confidence 99999999999999987
No 44
>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2
Probab=99.70 E-value=5.2e-17 Score=132.72 Aligned_cols=91 Identities=25% Similarity=0.486 Sum_probs=80.5
Q ss_pred EEEEEEEEEeeeecccCCC--CCCCcEEEEEEC---CeEEEeeeeCCCCCceeeceeeec-ccC---CCCceEEEEEecC
Q 019735 179 IGLLKVKVVKGINLAIRDM--MSSDPYVVLRLG---QQTVQTTIVKSNLNPVWNEELMLS-VPQ---EYGPVKLEVFDHD 249 (336)
Q Consensus 179 ~g~L~V~v~~a~~L~~~~~--~~~dPyv~i~l~---~~~~rT~~~~~t~nP~W~e~f~f~-v~~---~~~~L~v~V~d~~ 249 (336)
.+.|.|.|++|++|+..+. ..+||||++++. ...++|+++++++||+|||+|.|. +.. ....|.|+|||++
T Consensus 21 ~~~L~v~v~~a~~L~~~d~~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~d 100 (138)
T 1ugk_A 21 RKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILSFD 100 (138)
T ss_dssp GTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSEEECCCCSSCSSCEEEEEEEEECCCSTTGGGCEEEEEEEEEC
T ss_pred CCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEecCCCceEecCcCcCCCCCcEeeEEEEcCcCHHHhccCEEEEEEEECC
Confidence 5789999999999999886 378999999994 478999999999999999999995 654 2357999999999
Q ss_pred CCCCCCeeEEEEEeCccccc
Q 019735 250 TFSADDIMGEAEIDIQPLLT 269 (336)
Q Consensus 250 ~~~~dd~iG~~~i~l~~l~~ 269 (336)
.+++|++||++.++|.++..
T Consensus 101 ~~~~~~~lG~~~i~l~~l~~ 120 (138)
T 1ugk_A 101 RFSRDDIIGEVLIPLSGIEL 120 (138)
T ss_dssp SSCCCCCCEEEEEECTTCCC
T ss_pred CCCCCcEEEEEEEehhHccC
Confidence 99999999999999999853
No 45
>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=6.6e-17 Score=133.55 Aligned_cols=90 Identities=24% Similarity=0.401 Sum_probs=78.5
Q ss_pred EEEEEEEEEeeeecccC-C------C-CCCCcEEEEEEC---CeEEEeeeeCCCCCceeeceeeecccC---CCCceEEE
Q 019735 179 IGLLKVKVVKGINLAIR-D------M-MSSDPYVVLRLG---QQTVQTTIVKSNLNPVWNEELMLSVPQ---EYGPVKLE 244 (336)
Q Consensus 179 ~g~L~V~v~~a~~L~~~-~------~-~~~dPyv~i~l~---~~~~rT~~~~~t~nP~W~e~f~f~v~~---~~~~L~v~ 244 (336)
.+.|.|+|++|++|+.. + . ..+||||++++. ...++|+++++++||+|||+|.|.+.. ....|.|+
T Consensus 25 ~~~L~V~v~~a~~L~~~~d~~g~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~~~ 104 (147)
T 2enp_A 25 HNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKRKTQKPVFEERYTFEIPFLEAQRRTLLLT 104 (147)
T ss_dssp TTEEEEEEEEEECCCCSCSSCCSSCTTCCCCCEEEEEEETCCSSCEECCCCCSCSSCCCCBCCEECCCHHHHHHSEEEEE
T ss_pred CCEEEEEEEEEeCCCCccccccccccCCCCCcEEEEEEEeCCCcceEeecccCCCCCeEeeeEEEEeChHHhccCEEEEE
Confidence 47899999999999974 2 1 278999999995 357899999999999999999999864 23579999
Q ss_pred EEecCCCCCCCeeEEEEEeCcccc
Q 019735 245 VFDHDTFSADDIMGEAEIDIQPLL 268 (336)
Q Consensus 245 V~d~~~~~~dd~iG~~~i~l~~l~ 268 (336)
|||++.++++++||.+.++|.++.
T Consensus 105 V~d~d~~~~~~~iG~~~i~l~~l~ 128 (147)
T 2enp_A 105 VVDFDKFSRHCVIGKVSVPLCEVD 128 (147)
T ss_dssp EECCSTTCCSCCCEEEEEETTTSC
T ss_pred EEECCCCcCCcEEEEEEEechhcC
Confidence 999999999999999999999984
No 46
>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A
Probab=99.70 E-value=4.6e-17 Score=133.66 Aligned_cols=91 Identities=27% Similarity=0.519 Sum_probs=81.0
Q ss_pred EEEEEEEEEeeeecccCCCC-CCCcEEEEEECC-----eEEEeeeeCCCCCceeeceeeec-ccCC---CCceEEEEEec
Q 019735 179 IGLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQ-----QTVQTTIVKSNLNPVWNEELMLS-VPQE---YGPVKLEVFDH 248 (336)
Q Consensus 179 ~g~L~V~v~~a~~L~~~~~~-~~dPyv~i~l~~-----~~~rT~~~~~t~nP~W~e~f~f~-v~~~---~~~L~v~V~d~ 248 (336)
.+.|.|+|++|++|+..+.. .+||||++++.. ..++|+++++++||+|||+|.|. +... ...|.|+|||+
T Consensus 28 ~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~ 107 (142)
T 2chd_A 28 NSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVCDE 107 (142)
T ss_dssp GTEEEEEEEEEESCCCCCTTSCCCEEEEEEEESCCSGGGEEECCCCCSCSSCEEEEEEEEESCCHHHHHHCEEEEEEEEE
T ss_pred CCEEEEEEEEecCCCCCCCCCCCCCEEEEEEEcCCCCcceeeCCcCCCCCCCcCcCEEEEcccCHHHccCCEEEEEEEEC
Confidence 57899999999999998876 889999999964 68899999999999999999998 5431 36799999999
Q ss_pred CCCCCCCeeEEEEEeCccccc
Q 019735 249 DTFSADDIMGEAEIDIQPLLT 269 (336)
Q Consensus 249 ~~~~~dd~iG~~~i~l~~l~~ 269 (336)
+.+++|++||++.++|.++..
T Consensus 108 d~~~~d~~iG~~~i~l~~l~~ 128 (142)
T 2chd_A 108 DKFGHNEFIGETRFSLKKLKA 128 (142)
T ss_dssp CTTSCEEEEEEEEEEGGGCCT
T ss_pred CCCCCCcEEEEEEEEHHHcCC
Confidence 999999999999999999853
No 47
>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=5.8e-17 Score=133.02 Aligned_cols=103 Identities=22% Similarity=0.294 Sum_probs=85.5
Q ss_pred EEEEEEEEEeeeecccCCCCCCCcEEEEEECC-----eEEEeeeeCCCCCceeeceeeecccC---CCCceEEEEEecCC
Q 019735 179 IGLLKVKVVKGINLAIRDMMSSDPYVVLRLGQ-----QTVQTTIVKSNLNPVWNEELMLSVPQ---EYGPVKLEVFDHDT 250 (336)
Q Consensus 179 ~g~L~V~v~~a~~L~~~~~~~~dPyv~i~l~~-----~~~rT~~~~~t~nP~W~e~f~f~v~~---~~~~L~v~V~d~~~ 250 (336)
.+.|.|.|++|++|+..+...+||||++++.. .+++|+++++++||+|||+|.|.+.. ....|.|+|||++.
T Consensus 23 ~~~L~v~v~~a~~L~~~d~~g~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~ 102 (142)
T 2dmg_A 23 RNKLIVVVHACRNLIAFSEDGSDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDFSVSLPEVQRRTLDVAVKNSGG 102 (142)
T ss_dssp TTEEEEEEEEEECCCCSSTTCCCEEEEEEEESCCCSSSCEECCCCCSCSSCEEEEEEEECCCHHHHHHCEEEEEEEECCC
T ss_pred CCEEEEEEEEeECCCCCCCCCCCeeEEEEEEcCCCCCCcccCCccCCCCCCCcCceEEEEecHHHhCcCEEEEEEEECCC
Confidence 47899999999999988754489999999932 57899999999999999999999864 23589999999998
Q ss_pred CCC--CCeeEEEEEeCcccccccccCCCCCccCceeeceeeecCC
Q 019735 251 FSA--DDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDD 293 (336)
Q Consensus 251 ~~~--dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l~~ 293 (336)
++. +++||++.|+|..+..+ .....||+|..
T Consensus 103 ~~~~~~~~iG~~~i~l~~~~~~------------~~~~~W~~L~~ 135 (142)
T 2dmg_A 103 FLSKDKGLLGKVLVALASEELA------------KGWTQWYDLTE 135 (142)
T ss_dssp SSCCSCCCCEEEEEECCCSTTT------------TCBCCBCCCBC
T ss_pred ccccCCcEEEEEEEeccccccc------------ccccceeeccC
Confidence 763 57999999999987432 24678998655
No 48
>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1
Probab=99.69 E-value=1.6e-16 Score=128.96 Aligned_cols=86 Identities=22% Similarity=0.359 Sum_probs=72.9
Q ss_pred EEEEEEEEEeeeecccCCCCCCCcEEEEEECCeEEEeeeeC-CCCCceeeceeeecccCCCCceEEEEEecCCCCCCCee
Q 019735 179 IGLLKVKVVKGINLAIRDMMSSDPYVVLRLGQQTVQTTIVK-SNLNPVWNEELMLSVPQEYGPVKLEVFDHDTFSADDIM 257 (336)
Q Consensus 179 ~g~L~V~v~~a~~L~~~~~~~~dPyv~i~l~~~~~rT~~~~-~t~nP~W~e~f~f~v~~~~~~L~v~V~d~~~~~~dd~i 257 (336)
+|.|.|+|++|++|.. .+.+||||++. .+..+|+++. +++||.|||+|.|.+......|.|+|||++ +++|++|
T Consensus 4 ~~~L~V~V~~A~~l~~--~g~~DPYv~v~--~~~~kt~~~~~~t~nP~WnE~f~f~v~~~~~~L~~~V~D~d-~~~dd~i 78 (131)
T 2cjt_A 4 MSLLCVGVKKAKFDGA--QEKFNTYVTLK--VQNVKSTTIAVRGSQPSWEQDFMFEINRLDLGLTVEVWNKG-LIWDTMV 78 (131)
T ss_dssp CEEEEEEEEEEECSSC--GGGCEEEEEEE--ETTEEEECCCEESSSCEEEEEEEEEECCCSSEEEEEEEECC-SSCEEEE
T ss_pred ceEEEEEEEEeECCCC--CCCcCeEEEEE--ecCEEEeEecCCCCCceECCEEEEEEeCCCCeEEEEEEECC-CCCCCeE
Confidence 4789999999998853 33789999999 3344566665 699999999999999876678999999999 8899999
Q ss_pred EEEEEeCccccc
Q 019735 258 GEAEIDIQPLLT 269 (336)
Q Consensus 258 G~~~i~l~~l~~ 269 (336)
|++.|+|.++..
T Consensus 79 G~~~i~l~~l~~ 90 (131)
T 2cjt_A 79 GTVWIPLRTIRQ 90 (131)
T ss_dssp EEEEEEGGGSCB
T ss_pred EEEEEEHHHhhh
Confidence 999999999864
No 49
>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2
Probab=99.68 E-value=3.8e-16 Score=142.80 Aligned_cols=103 Identities=29% Similarity=0.489 Sum_probs=89.5
Q ss_pred EEEEEEEEEeeeecccCCCC-CCCcEEEEEEC---CeEEEeeeeCCCCCceeeceeeecccC---CCCceEEEEEecCCC
Q 019735 179 IGLLKVKVVKGINLAIRDMM-SSDPYVVLRLG---QQTVQTTIVKSNLNPVWNEELMLSVPQ---EYGPVKLEVFDHDTF 251 (336)
Q Consensus 179 ~g~L~V~v~~a~~L~~~~~~-~~dPyv~i~l~---~~~~rT~~~~~t~nP~W~e~f~f~v~~---~~~~L~v~V~d~~~~ 251 (336)
.|.|.|+|++|++|+..+.. .+||||+++++ .+.++|+++++++||+|||+|.|.+.. ....|.|+|||++.+
T Consensus 18 ~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~wne~f~f~v~~~~~~~~~l~~~V~d~d~~ 97 (284)
T 2r83_A 18 NNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELAGKTLVMAVYDFDRF 97 (284)
T ss_dssp TTEEEEEEEEEECCCCCSSSSSCCEEEEEEEETCTTSCEECCCCCSCSSCEEEEEEEECCCGGGCTTCEEEEEEEECCSS
T ss_pred CCEEEEEEEEeeCCCCCCCCCCCCeEEEEEEEcCCCceEeCCcccCCCCCeeCceEEEEechHHhCcCEEEEEEEECCCC
Confidence 47899999999999998876 89999999994 357899999999999999999999864 246899999999999
Q ss_pred CCCCeeEEEEEeCcccccccccCCCCCccCceeeceeeecCC
Q 019735 252 SADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDD 293 (336)
Q Consensus 252 ~~dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l~~ 293 (336)
++|++||++.++|.++.. +.....||+|..
T Consensus 98 ~~~~~lG~~~i~l~~l~~------------~~~~~~w~~L~~ 127 (284)
T 2r83_A 98 SKHDIIGEFKVPMNTVDF------------GHVTEEWRDLQS 127 (284)
T ss_dssp SCCCEEEEEEEEGGGCCC------------SSCEEEEEECBC
T ss_pred CCCceeEEEEEcchhccc------------CCcceeEEEeec
Confidence 999999999999999843 235678998754
No 50
>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B
Probab=99.68 E-value=3.1e-16 Score=154.83 Aligned_cols=93 Identities=31% Similarity=0.512 Sum_probs=84.9
Q ss_pred EEEEEEEEEEeeeecccCCCC-CCCcEEEEEECCeEEEeeeeCCCCCceeeceeeecccC-CCCceEEEEEecCCCCCCC
Q 019735 178 FIGLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQ-EYGPVKLEVFDHDTFSADD 255 (336)
Q Consensus 178 ~~g~L~V~v~~a~~L~~~~~~-~~dPyv~i~l~~~~~rT~~~~~t~nP~W~e~f~f~v~~-~~~~L~v~V~d~~~~~~dd 255 (336)
..|.|.|+|++|++|+..+.. .+||||++.++...++|+++++++||+|||+|.|.+.. ....|.|+|||+|.+++|+
T Consensus 385 ~~~~l~v~v~~a~~L~~~d~~~~sdpyv~v~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~~~~~~l~~~v~d~d~~~~~d 464 (510)
T 3jzy_A 385 GIGRLMVHVIEATELKACKPNGKSNPYCEISMGSQSYTTRTIQDTLNPKWNFNCQFFIKDLYQDVLCLTLFDRDQFSPDD 464 (510)
T ss_dssp -CEEEEEEEEEEESCCCCSTTSCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEESCTTTCEEEEEEEECCSSSSCC
T ss_pred CCceEEEEeceeecCCCCCCCCCCCeEEEEEECCeeccCCccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCCCCC
Confidence 468999999999999998876 89999999999999999999999999999999999866 3467999999999999999
Q ss_pred eeEEEEEeCcccccc
Q 019735 256 IMGEAEIDIQPLLTS 270 (336)
Q Consensus 256 ~iG~~~i~l~~l~~~ 270 (336)
+||.+.++|.++..+
T Consensus 465 ~lG~~~~~l~~l~~~ 479 (510)
T 3jzy_A 465 FLGRTEIPVAKIRTE 479 (510)
T ss_dssp EEEEEEEEHHHHHHH
T ss_pred ceEEEEEEHHHhccc
Confidence 999999999998654
No 51
>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1
Probab=99.65 E-value=1.5e-15 Score=128.38 Aligned_cols=86 Identities=22% Similarity=0.361 Sum_probs=73.7
Q ss_pred EEEEEEEEEeeeecccCCCCCCCcEEEEEECCeEEEeeeeC-CCCCceeeceeeecccCCCCceEEEEEecCCCCCCCee
Q 019735 179 IGLLKVKVVKGINLAIRDMMSSDPYVVLRLGQQTVQTTIVK-SNLNPVWNEELMLSVPQEYGPVKLEVFDHDTFSADDIM 257 (336)
Q Consensus 179 ~g~L~V~v~~a~~L~~~~~~~~dPyv~i~l~~~~~rT~~~~-~t~nP~W~e~f~f~v~~~~~~L~v~V~d~~~~~~dd~i 257 (336)
.+.|.|+|++|++|.. ...+||||++. .+..+|++++ +++||+|||+|.|.+......|.|+|||++ +++|++|
T Consensus 13 ~~~L~V~V~~A~~l~~--~g~~DPYV~v~--~~~~kt~~~~~~t~nP~WnE~f~f~v~~~~~~L~~~V~D~d-~~~dd~i 87 (167)
T 2cjs_A 13 LSLLCVGVKKAKFDGA--QEKFNTYVTLK--VQNVESTTIAVRGSQPSWEQDFMFEINRLDLGLTVEVWNKG-LIWDTMV 87 (167)
T ss_dssp CCEEEEEEEEEECSSC--GGGCEEEEEEE--ETTEEEECCCEESSSCEEEEEEEEECCCTTSEEEEEEEECC-SSCCEEE
T ss_pred eEEEEEEEEEEECCCC--CCCCCeEEEEE--ecceEEEEecCCCCCCCCCCEEEEEeeCCCCEEEEEEEECC-CCCCceE
Confidence 6889999999998842 33789999999 3345677776 599999999999999876678999999999 8899999
Q ss_pred EEEEEeCccccc
Q 019735 258 GEAEIDIQPLLT 269 (336)
Q Consensus 258 G~~~i~l~~l~~ 269 (336)
|++.|+|.++..
T Consensus 88 G~~~i~L~~l~~ 99 (167)
T 2cjs_A 88 GTVWIPLRTIRQ 99 (167)
T ss_dssp EEEEEEGGGSCB
T ss_pred EEEEEEHHHhcc
Confidence 999999999864
No 52
>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A
Probab=99.65 E-value=8.5e-16 Score=141.59 Aligned_cols=89 Identities=33% Similarity=0.611 Sum_probs=78.6
Q ss_pred EEEEEEEEEeeeecccCCCC-CCCcEEEEEE---CCeEEEeeeeCCCCCceeeceeeecccCC---CCceEEEEEecCCC
Q 019735 179 IGLLKVKVVKGINLAIRDMM-SSDPYVVLRL---GQQTVQTTIVKSNLNPVWNEELMLSVPQE---YGPVKLEVFDHDTF 251 (336)
Q Consensus 179 ~g~L~V~v~~a~~L~~~~~~-~~dPyv~i~l---~~~~~rT~~~~~t~nP~W~e~f~f~v~~~---~~~L~v~V~d~~~~ 251 (336)
.+.|.|+|++|++|+..+.. .+||||++++ +.+.++|+++++++||+|||+|.|.+... ...|.|+|||++.+
T Consensus 19 ~~~L~v~v~~a~~L~~~d~~g~~dPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~~~V~d~d~~ 98 (296)
T 1dqv_A 19 SDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAELAQRKLHFSVYDFDRF 98 (296)
T ss_dssp SCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCSCSSCEEEEEEEEECCGGGGSSCCCEEEEEECCSS
T ss_pred CCEEEEEEEEeECCCCcCCCCCcCeEEEEEEEcCCCeeEeCCccCCCCCCcEeeEEEEEecHHHhcCCEEEEEEEEcCCC
Confidence 47899999999999998876 8999999999 56788999999999999999999998642 35899999999999
Q ss_pred CCCCeeEEEEEe-Cccc
Q 019735 252 SADDIMGEAEID-IQPL 267 (336)
Q Consensus 252 ~~dd~iG~~~i~-l~~l 267 (336)
++|++||++.++ +.++
T Consensus 99 ~~~~~iG~~~i~~l~~~ 115 (296)
T 1dqv_A 99 SRHDLIGQVVLDNLLEL 115 (296)
T ss_dssp SCCCEEEEEECCCTTGG
T ss_pred CCCceEEEEEecccccc
Confidence 999999999985 4444
No 53
>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus}
Probab=99.62 E-value=4.7e-15 Score=146.62 Aligned_cols=87 Identities=25% Similarity=0.394 Sum_probs=79.7
Q ss_pred EEEEEEEEEEeeeecccCCCC-CCCcEEEEEECCeEEEeeeeCCCCCceeeceeeecccC--CCCceEEEEEecCCCCCC
Q 019735 178 FIGLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQ--EYGPVKLEVFDHDTFSAD 254 (336)
Q Consensus 178 ~~g~L~V~v~~a~~L~~~~~~-~~dPyv~i~l~~~~~rT~~~~~t~nP~W~e~f~f~v~~--~~~~L~v~V~d~~~~~~d 254 (336)
..|.|+|+|++|++|+. |.. .+||||+|.+++++++|+++++++||+|||+|.|.+.. ....|.|+|||+|.+++|
T Consensus 392 ~~~~L~V~V~~A~~L~~-D~~g~sDPYV~v~l~~~~~kTkvik~tlNP~Wne~f~f~~~~~~~~~~L~~~V~D~D~~~~d 470 (540)
T 3nsj_A 392 GLAHLVVSNFRAEHLWG-DYTTATDAYLKVFFGGQEFRTGVVWNNNNPRWTDKMDFENVLLSTGGPLRVQVWDADYGWDD 470 (540)
T ss_dssp TEEEEEEEEEEEESCCC-SSCSCCCEEEEEEETTEEEECCCBCSCSSCBCCCCEEEEEEETTTCCCEEEEEEECCSSSCC
T ss_pred cccEEEEEEEEccCCCc-ccCCCcCeEEEEEECCEeeeeeeecCCCCCCCCeEEEEEEecCCCCCEEEEEEEECCCCCCC
Confidence 37899999999999998 765 89999999999999999999999999999999998632 567899999999999999
Q ss_pred CeeEEEEEeCc
Q 019735 255 DIMGEAEIDIQ 265 (336)
Q Consensus 255 d~iG~~~i~l~ 265 (336)
|+||.+.++|.
T Consensus 471 D~LG~~~~~L~ 481 (540)
T 3nsj_A 471 DLLGSCDRSPH 481 (540)
T ss_dssp EEEEEEEECCC
T ss_pred CEEEEEEEEee
Confidence 99999999986
No 54
>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus}
Probab=99.61 E-value=1.1e-14 Score=117.97 Aligned_cols=85 Identities=12% Similarity=0.214 Sum_probs=78.0
Q ss_pred EEEEEEeeeecccCCCCCCCcEEEEEECCeEEEeeeeC-CCCCceeeceeeecccC---CCCceEEEEEecCCCCCCCee
Q 019735 182 LKVKVVKGINLAIRDMMSSDPYVVLRLGQQTVQTTIVK-SNLNPVWNEELMLSVPQ---EYGPVKLEVFDHDTFSADDIM 257 (336)
Q Consensus 182 L~V~v~~a~~L~~~~~~~~dPyv~i~l~~~~~rT~~~~-~t~nP~W~e~f~f~v~~---~~~~L~v~V~d~~~~~~dd~i 257 (336)
|+|.|..|.+|+. ++|||+++.+.+.+++|++++ ++.||+|||.|+|++.. ....|.|.|+|+++++++.+|
T Consensus 23 L~V~l~~a~~Lpg----~~Dp~akv~FRg~k~kTkvi~~~~~npvfnE~F~wpl~~~ld~~e~L~v~V~d~~~v~~nrlI 98 (144)
T 3l9b_A 23 LIVHLKTVSELRG----RADRIAKVTFRGQSFYSRVLENCEDVADFDETFRWPVASSIDRNEVLEIQIFNYSKVFSNKLI 98 (144)
T ss_dssp EEEEEEEEESCCS----CEEEEEEEEETTEEEECCCEEEECSCEEEEEEEEEEESSCCCTTCEEEEEEEEECTTSCCEEE
T ss_pred EEEEEEEecCCCC----CCCCeEEEEEeccceeeEEeccCCCCceEcceEEecCCCCCCCCCEEEEEEEECccccCCCEE
Confidence 8899999999995 569999999999999999998 69999999999999864 457899999999999999999
Q ss_pred EEEEEeCcccccc
Q 019735 258 GEAEIDIQPLLTS 270 (336)
Q Consensus 258 G~~~i~l~~l~~~ 270 (336)
|.+.++|.++...
T Consensus 99 G~~~i~Lq~lv~~ 111 (144)
T 3l9b_A 99 GTFRMVLQKVVEE 111 (144)
T ss_dssp EEEEEESHHHHHH
T ss_pred EEEEEEhHHhccC
Confidence 9999999999754
No 55
>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2
Probab=99.58 E-value=2.7e-15 Score=137.06 Aligned_cols=115 Identities=29% Similarity=0.374 Sum_probs=88.6
Q ss_pred EEEEEEEEEeeeecccCCCC-CCCcEEEEEEC--C---eEEEeeeeCCCCCceeeceeeecccCC---CCceEEEEEecC
Q 019735 179 IGLLKVKVVKGINLAIRDMM-SSDPYVVLRLG--Q---QTVQTTIVKSNLNPVWNEELMLSVPQE---YGPVKLEVFDHD 249 (336)
Q Consensus 179 ~g~L~V~v~~a~~L~~~~~~-~~dPyv~i~l~--~---~~~rT~~~~~t~nP~W~e~f~f~v~~~---~~~L~v~V~d~~ 249 (336)
.+.|.|.|++|++|+..+.. .+||||++++. + .+++|+++++++||+|||.|.|.+... ...|.|+|||++
T Consensus 149 ~~~l~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~d 228 (284)
T 2r83_A 149 AGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYD 228 (284)
T ss_dssp TTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCTTTGGGEEEEEEEEECC
T ss_pred CCceEEEEEEeECCCCcCCCCCcCeEEEEEEEeCCcEeeeeccceecCCCCCEEceeEEEeCCHHHhCceEEEEEEEeCC
Confidence 46899999999999998876 89999999983 2 457999999999999999999998653 346999999999
Q ss_pred CCCCCCeeEEEEEeCcccccccccCCCCCccCceeeceeeecCC
Q 019735 250 TFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDD 293 (336)
Q Consensus 250 ~~~~dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l~~ 293 (336)
.++++++||++.+++..+..+..+-...-......+.+||+|..
T Consensus 229 ~~~~~~~iG~~~i~l~~~~~~~~~w~~~~~~~~~~~~~W~~L~~ 272 (284)
T 2r83_A 229 KIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQV 272 (284)
T ss_dssp SSSCCCEEEEEEEETTCCHHHHHHHHHHHHSTTSCEEEEEECBC
T ss_pred CCCCCcEEEEEEECCCCCCcHHHHHHHHHHCCCCchheeeecCC
Confidence 99999999999999987532211100000012345678988654
No 56
>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A
Probab=99.53 E-value=4.4e-14 Score=142.40 Aligned_cols=92 Identities=26% Similarity=0.421 Sum_probs=81.1
Q ss_pred EEEEEEEEEEeeeecccCCC---CCCCcEEEEEECC-----eEEEeeeeCCC-CCceeeceeeecccCC-CCceEEEEEe
Q 019735 178 FIGLLKVKVVKGINLAIRDM---MSSDPYVVLRLGQ-----QTVQTTIVKSN-LNPVWNEELMLSVPQE-YGPVKLEVFD 247 (336)
Q Consensus 178 ~~g~L~V~v~~a~~L~~~~~---~~~dPyv~i~l~~-----~~~rT~~~~~t-~nP~W~e~f~f~v~~~-~~~L~v~V~d 247 (336)
..+.|+|+|++|++|+..+. ..+||||++.+.+ .+++|++++++ +||+|||+|.|.+..+ ...|.|+|||
T Consensus 495 ~~~~L~V~Vi~A~~L~~~d~~~~~~~DPYV~V~l~g~~~d~~~~kTkvi~~ng~NP~WnE~f~F~v~~~el~~L~~~V~D 574 (624)
T 1djx_A 495 RPERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVED 574 (624)
T ss_dssp CCEEEEEEEEEEESCCCCSSCSSSCCCEEEEEEEESSGGGCEEEECCCCTTCSSSCEEEEEEEEEESCGGGCEEEEEEEE
T ss_pred cceEEEEEEEEcCCCCcccccccCCCCcEEEEEEecCCCCcceeecccccCCCCCCccCceEEEEEecCCCCEEEEEEEE
Confidence 45889999999999998873 3889999999933 67899999997 9999999999998753 3679999999
Q ss_pred cCCCCCCCeeEEEEEeCccccc
Q 019735 248 HDTFSADDIMGEAEIDIQPLLT 269 (336)
Q Consensus 248 ~~~~~~dd~iG~~~i~l~~l~~ 269 (336)
+|.++++++||++.++|..+..
T Consensus 575 ~D~~~~dd~iG~~~ipl~~L~~ 596 (624)
T 1djx_A 575 YDSSSKNDFIGQSTIPWNSLKQ 596 (624)
T ss_dssp CCSSSCCEEEEEEEEEGGGBCC
T ss_pred cCCCCCCceeEEEEEEHHHcCC
Confidence 9999999999999999999853
No 57
>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A
Probab=99.52 E-value=1.1e-14 Score=148.39 Aligned_cols=103 Identities=19% Similarity=0.389 Sum_probs=89.6
Q ss_pred EEEEEEEEEEeeeeccc---CCCC-CCCcEEEEEEC---CeEEEeeeeCCCCCceeeceeeecccC-CCCceEEEEEecC
Q 019735 178 FIGLLKVKVVKGINLAI---RDMM-SSDPYVVLRLG---QQTVQTTIVKSNLNPVWNEELMLSVPQ-EYGPVKLEVFDHD 249 (336)
Q Consensus 178 ~~g~L~V~v~~a~~L~~---~~~~-~~dPyv~i~l~---~~~~rT~~~~~t~nP~W~e~f~f~v~~-~~~~L~v~V~d~~ 249 (336)
..|.|.|.|++|++|+. .+.. .+||||+++++ ..+++|+++++++||+|||+|.|.+.. ....|.|+|||+|
T Consensus 16 ~~g~L~V~Vi~A~nL~~~~~~D~~g~sDPYV~V~l~~~~~~k~kTkvik~tlNPvWNEtF~F~v~~~~~~~L~~~V~D~D 95 (749)
T 1cjy_A 16 YSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDAN 95 (749)
T ss_dssp CCEEEEEEEEEEECCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCBCEEEEEECC
T ss_pred CccEEEEEEEEEECCCCccccCCCCCcCeEEEEEEecCCCCeEecceEcCCCCCeeeeEEEEEecCCCCCEEEEEEEECC
Confidence 47899999999999998 6654 88999999997 467899999999999999999999976 5678999999999
Q ss_pred CCCCCCeeEEEEEeCcccccccccCCCCCccCceeeceeeecCC
Q 019735 250 TFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDD 293 (336)
Q Consensus 250 ~~~~dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l~~ 293 (336)
.++ |++||++.|+|.++.. +...+.||+|..
T Consensus 96 ~~~-ddfIG~v~I~L~~L~~------------g~~~~~w~~L~~ 126 (749)
T 1cjy_A 96 YVM-DETLGTATFTVSSMKV------------GEKKEVPFIFNQ 126 (749)
T ss_dssp SSS-CEEEEEECCBSTTSCT------------TCCCCEEEEETT
T ss_pred CCC-CceeEEEEEEHHHcCC------------CCceEEEEecCC
Confidence 998 9999999999998843 334568998755
No 58
>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus}
Probab=99.51 E-value=2.9e-15 Score=147.09 Aligned_cols=103 Identities=15% Similarity=0.215 Sum_probs=16.5
Q ss_pred eeEEEEEEEEEEEeeeecccCCCCCCCcEEEEEECCe-EEEeeeeCCC---CCceeeceeeecccCCCCceEEEEEec-C
Q 019735 175 MVEFIGLLKVKVVKGINLAIRDMMSSDPYVVLRLGQQ-TVQTTIVKSN---LNPVWNEELMLSVPQEYGPVKLEVFDH-D 249 (336)
Q Consensus 175 ~~~~~g~L~V~v~~a~~L~~~~~~~~dPyv~i~l~~~-~~rT~~~~~t---~nP~W~e~f~f~v~~~~~~L~v~V~d~-~ 249 (336)
.-...|.|+|+|++|++|+.++ ||||++++++. ..||++++++ +||+|||+|.|.+.+....|.|+|||. +
T Consensus 6 ~~r~~~~L~V~VieAk~L~~~d----dpYv~v~l~~~~~~kT~v~~kt~~glnP~WnE~F~f~~~~~~~~L~v~V~d~~d 81 (483)
T 3bxj_A 6 SRRVDNVLKLWIIEARELPPKK----RYYCELCLDDMLYARTTSKPRSASGDTVFWGEHFEFNNLPAVRALRLHLYRDSD 81 (483)
T ss_dssp EEEEEECC-------------------------------------------------CCEECC-----------------
T ss_pred cceeccEEEEEEEEcCCcCCCC----CCeEEEEECCeEEeeeeEEeCCCCCCCCccccEEEEecCCCccEEEEEEEecCC
Confidence 4556789999999999999887 99999999775 5699999999 999999999999755457899999994 4
Q ss_pred ---CCCCCCeeEEEEEeCcccccccccCCCCCccCceeeceeeecCC
Q 019735 250 ---TFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDD 293 (336)
Q Consensus 250 ---~~~~dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l~~ 293 (336)
.+++|++||.+.|++.++.. +...+.||+|.+
T Consensus 82 ~~~~~~~d~~lG~v~i~l~~l~~------------~~~~~~W~~L~~ 116 (483)
T 3bxj_A 82 KKRKKDKAGYVGLVTVPVATLAG------------RHFTEQWYPVTL 116 (483)
T ss_dssp -------------------------------------CCEECC----
T ss_pred ccccCCCCceEEEEEEEHHHhcC------------CCCCCeEEECCC
Confidence 36789999999999999853 235678999854
No 59
>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A
Probab=99.49 E-value=8.9e-15 Score=134.72 Aligned_cols=115 Identities=26% Similarity=0.396 Sum_probs=90.4
Q ss_pred EEEEEEEEEeeeecccCCCC-CCCcEEEEEEC--C---eEEEeeeeCCCCCceeeceeeecccCC---CCceEEEEEecC
Q 019735 179 IGLLKVKVVKGINLAIRDMM-SSDPYVVLRLG--Q---QTVQTTIVKSNLNPVWNEELMLSVPQE---YGPVKLEVFDHD 249 (336)
Q Consensus 179 ~g~L~V~v~~a~~L~~~~~~-~~dPyv~i~l~--~---~~~rT~~~~~t~nP~W~e~f~f~v~~~---~~~L~v~V~d~~ 249 (336)
.|.|.|.|++|++|+..+.. .+||||++++. + .+++|+++++++||+|||.|.|.+... ...|.|+|||++
T Consensus 151 ~~~l~v~v~~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d 230 (296)
T 1dqv_A 151 AGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVDYD 230 (296)
T ss_dssp TTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCCCSCSSCEEEECCCCCCCSGGGGSCCCCCEEEECC
T ss_pred cceeEEEEEEeecCCccCCCCCCCcEEEEEEEeCCcCccceecceecCCCCCeECceEEEEcCHHHccCcEEEEEEEeCC
Confidence 48899999999999998876 78999999995 2 568999999999999999999998753 347999999999
Q ss_pred CCCCCCeeEEEEEeCcccccccccC-CCCCccCceeeceeeecCC
Q 019735 250 TFSADDIMGEAEIDIQPLLTSALAF-GDPEMFGNMQIGKWLKSDD 293 (336)
Q Consensus 250 ~~~~dd~iG~~~i~l~~l~~~~~~~-~~~~~~~~~~~~~wf~l~~ 293 (336)
.++++++||.+.|++..+....... ...--..+..+..|++|..
T Consensus 231 ~~~~~~~iG~~~i~l~~~~~~~~~~W~~~~~~~~~~~~~w~~L~~ 275 (296)
T 1dqv_A 231 CIGHNEVIGVCRVGPEAADPHGREHWAEMLANPRKPVEHWHQLVE 275 (296)
T ss_dssp SSSCCEEEEECCCSSCTTCHHHHHHHHTSSSSSSSCSCSCCCCBB
T ss_pred CCCCCceEEEEEECCccCCchhHHHHHHHHhCCCCceeEeeeccC
Confidence 9999999999999998764311100 0000113456778988765
No 60
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A
Probab=99.33 E-value=1.8e-12 Score=132.31 Aligned_cols=107 Identities=32% Similarity=0.464 Sum_probs=90.7
Q ss_pred EEEEEEEEEeeeecccCCCC-CCCcEEEEEE-----CCeEEEeeeeCCCCCceeeceeeecccC--CCCceEEEEEecCC
Q 019735 179 IGLLKVKVVKGINLAIRDMM-SSDPYVVLRL-----GQQTVQTTIVKSNLNPVWNEELMLSVPQ--EYGPVKLEVFDHDT 250 (336)
Q Consensus 179 ~g~L~V~v~~a~~L~~~~~~-~~dPyv~i~l-----~~~~~rT~~~~~t~nP~W~e~f~f~v~~--~~~~L~v~V~d~~~ 250 (336)
.+.|.|.|++|++|...+.. .+||||++++ ...+++|+++++++||+|||.|.|.+.. ....|.|+|||+|.
T Consensus 171 ~~~L~V~v~~a~~L~~~d~~g~sDPyvkv~l~p~~~~~~k~kT~v~~~tlnP~wne~f~f~~~~~~~~~~L~v~v~d~d~ 250 (674)
T 3pfq_A 171 REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQLKESDKDRRLSVEIWDWDL 250 (674)
T ss_dssp SSEEEEEEEEEESCCCCSTTSSCCEEEEEEEESCSSCCSCEECCCCSSCSSCEEEEEEEEECCSTTTTCEEEEEEEECCS
T ss_pred cceeeeeeecccccCCCCcccccCcccccccccCccccccccccccccccCCCccceeeeecccCCccceeeeEEeeccc
Confidence 47899999999999999887 8999999999 4467899999999999999999999865 34569999999999
Q ss_pred CCCCCeeEEEEEeCcccccccccCCCCCccCceeeceeeecCCccccc
Q 019735 251 FSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLE 298 (336)
Q Consensus 251 ~~~dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l~~~~~~~ 298 (336)
+++|++||.+.+++.++... ..+.||++.......
T Consensus 251 ~~~dd~iG~~~i~l~~l~~~-------------~~~~w~~Lls~~~g~ 285 (674)
T 3pfq_A 251 TSRNDFMGSLSFGISELQKA-------------GVDGWFKLLSQEEGE 285 (674)
T ss_dssp SSCCEECCBCCCBTTHHHHC-------------CEEEEEECBCTTGGG
T ss_pred ccccccccccccchhhhccC-------------Ccccceeecccccce
Confidence 99999999999999988532 246788876654433
No 61
>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A
Probab=99.15 E-value=2e-10 Score=118.18 Aligned_cols=85 Identities=15% Similarity=0.394 Sum_probs=71.7
Q ss_pred EEEEEEEEEeeeecccCCCCCCCcEEEEEECC-------eEEEeeeeCC-CCCceeece-eeec-ccC-CCCceEEEEEe
Q 019735 179 IGLLKVKVVKGINLAIRDMMSSDPYVVLRLGQ-------QTVQTTIVKS-NLNPVWNEE-LMLS-VPQ-EYGPVKLEVFD 247 (336)
Q Consensus 179 ~g~L~V~v~~a~~L~~~~~~~~dPyv~i~l~~-------~~~rT~~~~~-t~nP~W~e~-f~f~-v~~-~~~~L~v~V~d 247 (336)
.+.|+|+|++|++|+.. ..||||++.+.+ .+++|+++++ ++||+|||+ |.|. +.. ....|.|+|||
T Consensus 649 ~~~L~V~Visaq~L~~~---~~DPYV~V~l~g~p~d~~~~k~kTkvv~~nglNPvWNE~~F~F~~v~~pela~Lrf~V~D 725 (816)
T 3qr0_A 649 AGTIEIKIISAQFLSDK---QISSYVEVEMYGLPTDTVRKKFKTKIIENNGMDPYYDEKVFVFKKVVLPDLAVVRIIVSE 725 (816)
T ss_dssp CEEEEEEEEEEECCCSS---CCCEEEEEEEESSGGGCEEEEEECCCBCSCSSCCBCCCCCEEEEEESCGGGCEEEEEEEE
T ss_pred ceEEEEEEEEcccCCCC---CCCCeEEEEEeCCCcccccceeeeEEecCCCCCCeEcCceeEEccccCCCccEEEEEEEe
Confidence 47899999999999864 579999999843 5789999986 699999998 9998 643 34578999999
Q ss_pred cCCCCCCCeeEEEEEeCcccccc
Q 019735 248 HDTFSADDIMGEAEIDIQPLLTS 270 (336)
Q Consensus 248 ~~~~~~dd~iG~~~i~l~~l~~~ 270 (336)
++ +++||++.+||..|..+
T Consensus 726 ~d----ddfiG~~~ipL~~L~~G 744 (816)
T 3qr0_A 726 EN----GKFIGHRVMPLDGIKPG 744 (816)
T ss_dssp TT----SCEEEEEEEESTTCCCE
T ss_pred cC----CCeeeEEEEEHHHcCCc
Confidence 75 78999999999998654
No 62
>3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens}
Probab=99.14 E-value=1.2e-10 Score=120.67 Aligned_cols=85 Identities=21% Similarity=0.419 Sum_probs=70.4
Q ss_pred EEEEEEEEEeeeecccCCCCCCCcEEEEEECC------eEEEeeeeCC-CCCceeec-eeeec-ccC-CCCceEEEEEec
Q 019735 179 IGLLKVKVVKGINLAIRDMMSSDPYVVLRLGQ------QTVQTTIVKS-NLNPVWNE-ELMLS-VPQ-EYGPVKLEVFDH 248 (336)
Q Consensus 179 ~g~L~V~v~~a~~L~~~~~~~~dPyv~i~l~~------~~~rT~~~~~-t~nP~W~e-~f~f~-v~~-~~~~L~v~V~d~ 248 (336)
...|+|+|++|++|+.. ..||||+|.+.+ .+++|+++.+ ++||+||| .|.|. +.. ....|.|+|||+
T Consensus 724 ~~~L~V~Visaq~L~~~---~~DPYV~V~l~g~p~D~~~k~kTkvi~~NglNPvWnEe~F~F~~V~~pela~Lrf~V~D~ 800 (885)
T 3ohm_B 724 ANALRVKVISGQFLSDR---KVGIYVEVDMFGLPVDTRRKYRTRTSQGNSFNPVWDEEPFDFPKVVLPTLASLRIAAFEE 800 (885)
T ss_dssp CEEEEEEEEEEESCCSS---CCCEEEEEEEESSTTTCBCCCCCCCCSSCSSSCBCCCCCEEEEEESCGGGCEEEEEEEET
T ss_pred ceEEEEEEEEeccCccc---CCCcEEEEEEeCCCcccccceeeEEeeCCCcCCeeccceeEEeeEEcCCcCEEEEEEEcC
Confidence 34799999999999864 579999999843 3579999986 69999999 69998 543 345799999998
Q ss_pred CCCCCCCeeEEEEEeCcccccc
Q 019735 249 DTFSADDIMGEAEIDIQPLLTS 270 (336)
Q Consensus 249 ~~~~~dd~iG~~~i~l~~l~~~ 270 (336)
+ +++||++.+||..|..+
T Consensus 801 d----ddfiG~~~lpL~~L~~G 818 (885)
T 3ohm_B 801 G----GKFVGHRILPVSAIRSG 818 (885)
T ss_dssp T----TEEEEEEEEETTTCCCE
T ss_pred C----ccEEeeEEEEHHHcCCC
Confidence 7 79999999999998644
No 63
>1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A
Probab=99.12 E-value=1.3e-09 Score=85.71 Aligned_cols=114 Identities=11% Similarity=0.213 Sum_probs=82.0
Q ss_pred EEEEEEEEEeeeecccCCCC-CCCcEEEEEECCeEE----Ee-eeeCCCCCceeeceeeecccCCCCceEEEEEecCCCC
Q 019735 179 IGLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQQTV----QT-TIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHDTFS 252 (336)
Q Consensus 179 ~g~L~V~v~~a~~L~~~~~~-~~dPyv~i~l~~~~~----rT-~~~~~t~nP~W~e~f~f~v~~~~~~L~v~V~d~~~~~ 252 (336)
.+.|+|.+.++.--...... ..||||.+.++.... +| .+.++|..|+||+.|.-.+.+ ...|.|.|++...
T Consensus 5 ~~flRi~~~~~~~~~~~~~~~~lDPy~aV~vdE~~~~e~g~t~~~K~kT~~P~Wne~Fd~~V~~-Gr~l~i~Vfh~a~-- 81 (126)
T 1yrk_A 5 APFLRIAFNSYELGSLQAEDEANQPFCAVKMKEALSTERGKTLVQKKPTMYPEWKSTFDAHIYE-GRVIQIVLMRAAE-- 81 (126)
T ss_dssp CCEEEEEEEEEECSSCCCSSSSCCCEEEEEEEEEEEETTEEEEECCSCCBCCCTTCEEEEECCT-TCEEEEEEEEETT--
T ss_pred CccEEeeeccccccccCCccccCCceEEEEeeeeEEcccceeecccCCCCCcCccceEEeeeeC-CEEEEEEEEcCCC--
Confidence 34577877665532222222 679999999966442 44 677779999999999999876 4789999997554
Q ss_pred CCCeeEEEEEeCcccccccccCCCCCccCceeeceeeecCCcccccccceeeecCeEEEEEEEEecccccceEEEEEEEE
Q 019735 253 ADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQNVESGELELELEWM 332 (336)
Q Consensus 253 ~dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l~~~~~~~~~~~~~~~g~~~~~~~l~l~~~~~G~i~l~l~~~ 332 (336)
+|++.++|++.+|+...+.. +... ++|+.|+ +.|+|+++++|+
T Consensus 82 --~fvAn~tV~~edL~~~c~~~-------~g~~--------------------------e~WvdLe--P~Gkl~~~i~~~ 124 (126)
T 1yrk_A 82 --EPVSEVTVGVSVLAERCKKN-------NGKA--------------------------EFWLDLQ--PQAKVLMSVQYF 124 (126)
T ss_dssp --EEEEEEEEEHHHHHHHHHTT-------TTEE--------------------------EEEEECB--SSCEEEEEEEEE
T ss_pred --CeeeEEEEEHHHHHhhhccC-------CCce--------------------------EEEEecc--cCcEEEEEEEEe
Confidence 89999999999998542210 1122 5556665 589999999986
No 64
>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B
Probab=99.11 E-value=2.3e-10 Score=118.05 Aligned_cols=84 Identities=25% Similarity=0.454 Sum_probs=70.1
Q ss_pred EEEEEEEEEeeeecccCCCCCCCcEEEEEECC------eEEEee-eeCC-CCCceeec-eeee-cccC-CCCceEEEEEe
Q 019735 179 IGLLKVKVVKGINLAIRDMMSSDPYVVLRLGQ------QTVQTT-IVKS-NLNPVWNE-ELML-SVPQ-EYGPVKLEVFD 247 (336)
Q Consensus 179 ~g~L~V~v~~a~~L~~~~~~~~dPyv~i~l~~------~~~rT~-~~~~-t~nP~W~e-~f~f-~v~~-~~~~L~v~V~d 247 (336)
.|.|+|.|++|++|+.. .+||||++.+.+ ++++|+ ++++ ++||+||| .|.| .+.. ....|.|.|||
T Consensus 677 ~~~L~V~Visa~~L~~~---~~DPYV~V~l~g~p~d~~~k~kTk~vv~~n~~NPvWnEe~f~F~~v~~~el~~Lr~~V~D 753 (799)
T 2zkm_X 677 ATTLSITVISGQFLSER---SVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAVME 753 (799)
T ss_dssp CEEEEEEEEEEESCCSS---CCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGCEEEEEEEE
T ss_pred eeeEEEEEEeccccCcc---CCCcEEEEEEEecCCCcccceeecccccCCCCCCeeecceEEEEEEccCCccEEEEEEEE
Confidence 57899999999999863 579999999922 367999 8875 69999999 6999 7754 33579999999
Q ss_pred cCCCCCCCeeEEEEEeCccccc
Q 019735 248 HDTFSADDIMGEAEIDIQPLLT 269 (336)
Q Consensus 248 ~~~~~~dd~iG~~~i~l~~l~~ 269 (336)
++ +++||++.+||..|..
T Consensus 754 ~d----~d~iG~~~ipl~~L~~ 771 (799)
T 2zkm_X 754 EG----NKFLGHRIIPINALNS 771 (799)
T ss_dssp TT----TEEEEEEEEEGGGBCC
T ss_pred eC----CCccceEeeehhhcCC
Confidence 86 7999999999999854
No 65
>2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens}
Probab=99.06 E-value=1.1e-09 Score=87.23 Aligned_cols=88 Identities=13% Similarity=0.220 Sum_probs=66.9
Q ss_pred EEEEEEEEEEeeeecccC--CCCCCCcEEEEEECCeE----EEe-eeeCCCCCceeeceeeecccCCCCceEEEEEecCC
Q 019735 178 FIGLLKVKVVKGINLAIR--DMMSSDPYVVLRLGQQT----VQT-TIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHDT 250 (336)
Q Consensus 178 ~~g~L~V~v~~a~~L~~~--~~~~~dPyv~i~l~~~~----~rT-~~~~~t~nP~W~e~f~f~v~~~~~~L~v~V~d~~~ 250 (336)
..+.|+|.+.+..-.+.. .....||||.+.++... -+| .+.++|..|+||+.|.-.+.+ ...|.|.||+...
T Consensus 8 m~~flRi~l~~~~~~~~~~~~~~~lDPY~aV~VdE~~~te~gqtl~~KkkT~~P~Wne~Fd~~V~~-Gr~l~i~Vfh~a~ 86 (138)
T 2enj_A 8 MSPFLRIGLSNFDCGSCQSCQGEAVNPYCAVLVKEYVESENGQMYIQKKPTMYPPWDSTFDAHINK-GRVMQIIVKGKNV 86 (138)
T ss_dssp CCCCEEEEEEEEECCCCCCSCCCCCCCEEEEEEEEEEEETTEEEEEEEEEEECCCSSSEEEECCCS-SCEEEEEEECSSC
T ss_pred cCcceEEEeeccccCCCCCcccccCCceEEEEeeeeeeccCceeecccCCCCCccccceEeeeEEC-CeEEEEEEEcCCC
Confidence 345678888776543322 22368999999996643 366 666779999999999999876 4789999996443
Q ss_pred CCCCCeeEEEEEeCcccccc
Q 019735 251 FSADDIMGEAEIDIQPLLTS 270 (336)
Q Consensus 251 ~~~dd~iG~~~i~l~~l~~~ 270 (336)
+|++.+.|++.+|+..
T Consensus 87 ----~fVAn~tV~~edL~~~ 102 (138)
T 2enj_A 87 ----DLISETTVELYSLAER 102 (138)
T ss_dssp ----SCCEEEEEESHHHHHH
T ss_pred ----CeeeEEEEEHHHHHhh
Confidence 8999999999999854
No 66
>3l4c_A Dedicator of cytokinesis protein 1; DOCK180, DOCK1, phosphoinositide specificity, guanine exchan factor, RHO GTPase, cytoskeleton, cell migration; 2.37A {Homo sapiens}
Probab=91.14 E-value=2.1 Score=36.76 Aligned_cols=55 Identities=13% Similarity=0.270 Sum_probs=42.1
Q ss_pred EEEeeeeCCCCCceeeceeeecccC---CCCceEEEEEecCCC----CCCCeeEEEEEeCcc
Q 019735 212 TVQTTIVKSNLNPVWNEELMLSVPQ---EYGPVKLEVFDHDTF----SADDIMGEAEIDIQP 266 (336)
Q Consensus 212 ~~rT~~~~~t~nP~W~e~f~f~v~~---~~~~L~v~V~d~~~~----~~dd~iG~~~i~l~~ 266 (336)
.++|.|...+.+|.|+|++.+.++. ....|.|++++...- ..+..+|.+.+||-.
T Consensus 78 e~~S~V~YHnk~P~w~EtIKi~LP~~~~~~~HLlFtFrH~S~~~k~dk~E~pfg~a~lPL~~ 139 (220)
T 3l4c_A 78 EYKSVIYYQVKQPRWFETVKVAIPIEDVNRSHLRFTFRHRSSQDSKDKSEKIFALAFVKLMR 139 (220)
T ss_dssp CEECCCCTTCSSCCCCEEEEEEECTTSSTTEEEEEEEEECCCCSSCCCCCCEEEEEEEESBC
T ss_pred eEEEEEEEcCCCCCceEeEEEeeChhhcCCeEEEEEEEEecccccccccCCeeEEEEEEccc
Confidence 4688888889999999999999876 446788998875421 123578999999853
No 67
>2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta isoform; transferase, phosphoprotein, isoform-specific inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A* 2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A* 2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A*
Probab=85.09 E-value=4.1 Score=42.61 Aligned_cols=87 Identities=15% Similarity=0.242 Sum_probs=58.9
Q ss_pred EEEEEEEEEeeeecccCCCCCCCcEEEEEE--CCeE----EEeeeeCCCCCceeeceeeecccC----CCCceEEEEEec
Q 019735 179 IGLLKVKVVKGINLAIRDMMSSDPYVVLRL--GQQT----VQTTIVKSNLNPVWNEELMLSVPQ----EYGPVKLEVFDH 248 (336)
Q Consensus 179 ~g~L~V~v~~a~~L~~~~~~~~dPyv~i~l--~~~~----~rT~~~~~t~nP~W~e~f~f~v~~----~~~~L~v~V~d~ 248 (336)
...+.|.|..+.++...+ ..+-||.+.+ |++. ..|..+.-..+|.|||.+.|++.- ....|.|+||+.
T Consensus 216 ~~~f~i~i~~~~~~~~~~--~~~~~V~~~l~~g~~~l~~~~~T~~~~~~~~~~Wne~l~f~i~i~dLPr~a~L~~ti~~~ 293 (940)
T 2wxf_A 216 EQPFSIELIEGRKVNADE--RMKLVVQAGLFHGNEMLCKTVSSSEVNVCSEPVWKQRLEFDISVCDLPRMARLCFALYAV 293 (940)
T ss_dssp CSEEEEEEEEEECCCC-----CEEEEEEEEEETTEESSCCEECCCEESCSSCEEEEEEEEEEEGGGCCTTCEEEEEEEEE
T ss_pred CCceEEEEEEecccCCCC--CceEEEEEEEEECCEEccCceecccccCCCCcccceEEEcccccccCCcccEEEEEEEEe
Confidence 456889999998886543 3467877665 5542 455555557789999999887632 456799999996
Q ss_pred CCC--C----------CCCeeEEEEEeCccc
Q 019735 249 DTF--S----------ADDIMGEAEIDIQPL 267 (336)
Q Consensus 249 ~~~--~----------~dd~iG~~~i~l~~l 267 (336)
..- + .+..||.+.++|-+.
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~lg~~~~~lFd~ 324 (940)
T 2wxf_A 294 VEKAKKARSTKKKSKKADCPIAWANLMLFDY 324 (940)
T ss_dssp C----------------CEEEEEEEEESBCT
T ss_pred cCCccCccccccccccccceEEEEeeeEECC
Confidence 321 1 235899999998764
No 68
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=81.98 E-value=0.57 Score=29.79 Aligned_cols=39 Identities=31% Similarity=0.800 Sum_probs=30.9
Q ss_pred CCCCCCcCCCCC-CCCeEEeeeceEEcccchhhhccCCCc
Q 019735 30 RDNRICADCGAP-DPKWASANIGVFICLKCCGVHRSLGTH 68 (336)
Q Consensus 30 ~~N~~C~dC~~~-~p~w~s~~~g~f~C~~C~~~hr~lg~~ 68 (336)
.+...|++|++. -|.|=.-.-|..+|-.|.-.++..|.+
T Consensus 2 ~~~~~C~~C~tt~Tp~WR~gp~G~~LCNaCGl~~k~~~~~ 41 (46)
T 1gnf_A 2 SEARECVNCGATATPLWRRDRTGHYLCNACGLYHKMNGQN 41 (46)
T ss_dssp CCSCCCTTTCCCCCSSCBCCTTCCCBCSHHHHHHHHTCSC
T ss_pred CCCCCCCCcCCCCCCcCccCCCCCccchHHHHHHHHcCCC
Confidence 356899999985 678998888999999997766665543
No 69
>3hhm_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha isoform; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_A 2rd0_A 4a55_A* 2enq_A
Probab=80.96 E-value=4.9 Score=42.55 Aligned_cols=88 Identities=18% Similarity=0.190 Sum_probs=58.6
Q ss_pred EEEEEEEEEeeeecccCCCCCCCcEEEEEE--CCe----EEEeeeeCCCCCceeeceeeecccC----CCCceEEEEEec
Q 019735 179 IGLLKVKVVKGINLAIRDMMSSDPYVVLRL--GQQ----TVQTTIVKSNLNPVWNEELMLSVPQ----EYGPVKLEVFDH 248 (336)
Q Consensus 179 ~g~L~V~v~~a~~L~~~~~~~~dPyv~i~l--~~~----~~rT~~~~~t~nP~W~e~f~f~v~~----~~~~L~v~V~d~ 248 (336)
...+.|+|+.+.++........+-||.+.+ |++ ...|+.+. ..+|.|||.+.|++.- ....|.|+||+.
T Consensus 354 ~~~f~v~i~~~~~~n~~~~~~~~~~V~~~l~hG~~~L~~~~~T~~~~-~~~~~Wne~l~f~i~i~dLPr~arL~~tl~~~ 432 (1091)
T 3hhm_A 354 NSALRIKILCATYVNVNIRDIDKIYVRTGIYHGGEPLCDNVNTQRVP-CSNPRWNEWLNYDIYIPDLPRAARLCLSICSV 432 (1091)
T ss_dssp CSEEEEEEEEESCCCCCCSSCCCCCEEEEEESSSCSSCCEECCCCCC-TTSCEEEEEEEEEEEGGGCCTTCEEEEEECCC
T ss_pred CCCEEEEEEEecCCCCCccccceEEEEEEEEECCEEccCceeccccC-CCCCCCCeeEEecCccccCChhcEEEEEEEEe
Confidence 456899999988776433224577888777 443 34444333 4578899998888632 456799999986
Q ss_pred CCC----CCCCeeEEEEEeCccc
Q 019735 249 DTF----SADDIMGEAEIDIQPL 267 (336)
Q Consensus 249 ~~~----~~dd~iG~~~i~l~~l 267 (336)
... ..+..||.+.++|-+.
T Consensus 433 ~~~~~~~~~~~~lg~~n~~lfd~ 455 (1091)
T 3hhm_A 433 KGRKGAKEEHCPLAWGNINLFDY 455 (1091)
T ss_dssp CCCC-------CCEEEEEESBCT
T ss_pred cCccCcccccceeEEeeeeeEcc
Confidence 542 1245899999999765
No 70
>2yrb_A Protein fantom; beta sandwich, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.7.1.1
Probab=80.81 E-value=9.7 Score=30.73 Aligned_cols=89 Identities=15% Similarity=0.197 Sum_probs=56.9
Q ss_pred EEEEEEEEeeeecccCCC--CCCCcEEEEEE---CCeEEEeeeeCCCCCceeeceeeecccC--------CCCceEEEEE
Q 019735 180 GLLKVKVVKGINLAIRDM--MSSDPYVVLRL---GQQTVQTTIVKSNLNPVWNEELMLSVPQ--------EYGPVKLEVF 246 (336)
Q Consensus 180 g~L~V~v~~a~~L~~~~~--~~~dPyv~i~l---~~~~~rT~~~~~t~nP~W~e~f~f~v~~--------~~~~L~v~V~ 246 (336)
+.+.|.|.++.--+..-. ...+|..-+.+ +-+.+.|.++. +.+|.+|.+-.|.+.. ....+.|+++
T Consensus 18 nlfEihi~~~~~~~~~l~~~~d~~p~tF~t~dF~dfEtq~Tpv~~-G~~p~y~fts~Y~V~~d~~fl~yL~~~~l~lELh 96 (156)
T 2yrb_A 18 NLFEIHINKVTFSSEVLQASGDKEPVTFCTYAFYDFELQTTPVVR-GLHPEYNFTSQYLVHVNDLFLQYIQKNTITLEVH 96 (156)
T ss_dssp EEEEEEEEEECCCHHHHHHHCSSCCEEEEEECSTTCCCEECCCEE-SSSCCCCEEEEEEECCSHHHHHHHHHCCEEEEEE
T ss_pred cEEEEEEeEEEEcHHHHhhccccCCcEEEEEEEeceEeeeccccc-CCCCCcceEEEEEEEeCHHHHHHHhcCCEEEEEE
Confidence 556777777652111000 12366555554 34555666655 8999999888777743 1247889998
Q ss_pred ecCCCCCCCeeEEEEEeCcccccc
Q 019735 247 DHDTFSADDIMGEAEIDIQPLLTS 270 (336)
Q Consensus 247 d~~~~~~dd~iG~~~i~l~~l~~~ 270 (336)
.... +..+.||.+.|+|.++++.
T Consensus 97 qa~g-~~~~tla~~~I~l~~lLe~ 119 (156)
T 2yrb_A 97 QAYS-TEYETIAACQLKFHEILEK 119 (156)
T ss_dssp EECS-SCEEEEEEEEECCSHHHHC
T ss_pred EeeC-CCceEEEEEEEEhHHhhCc
Confidence 7643 3456999999999999743
No 71
>1e7u_A Phosphatidylinositol 3-kinase catalytic subunit; phosphoinositide 3-kinase gamma, secondary messenger generation, PI3K, PI 3K, wortmannin; HET: KWT; 2.0A {Sus scrofa} SCOP: a.118.1.6 b.7.1.1 d.15.1.5 d.144.1.4 PDB: 1e8x_A* 1e8w_A* 1e7v_A* 1e90_A* 3l54_A* 3s2a_A* 3qaq_A* 3qjz_A* 3qk0_A* 3qar_A* 3apc_A* 3apd_A* 3apf_A* 3dbs_A* 3l13_A* 3r7q_A* 3cst_A* 3csf_A* 3l16_A* 3l17_A* ...
Probab=78.70 E-value=8 Score=40.53 Aligned_cols=88 Identities=14% Similarity=0.129 Sum_probs=53.9
Q ss_pred EEEEEEEEeeeecccCCCCCCCcEEEEEE--CCeEE---EeeeeCCCCCceeeceeeeccc--C--CCCceEEEEEecCC
Q 019735 180 GLLKVKVVKGINLAIRDMMSSDPYVVLRL--GQQTV---QTTIVKSNLNPVWNEELMLSVP--Q--EYGPVKLEVFDHDT 250 (336)
Q Consensus 180 g~L~V~v~~a~~L~~~~~~~~dPyv~i~l--~~~~~---rT~~~~~t~nP~W~e~f~f~v~--~--~~~~L~v~V~d~~~ 250 (336)
..+.|.|+.+...........+-||.+.+ |.+.. +|..+.-+.+|.|||.+.|++. + ....|.|+||+...
T Consensus 218 ~~f~i~i~~~~~~~~~~~~~~~~~V~~~l~~G~~~l~~~~t~~~~~~~~~~Wne~l~f~i~i~dLPr~a~L~~ti~~~~~ 297 (961)
T 1e7u_A 218 RKFRVKIRGIDIPVLPRTADLTVFVEANIQYGQQVLCQRRTSPKPFTEEVLWNVWLEFSIKIKDLPKGALLNLQIYCGAK 297 (961)
T ss_dssp SEEEEEEEEEECSSCCTTSCEEEEEEEEEEETTEEEEEEECCCEECCSEEEEEEEEEEEEEGGGCCTTCEEEEEEEEEEC
T ss_pred CceEEEEeecccccccCCCCceEEEEEEEEECCEEcccceeeccccCCCcccceeEEeccccccCCcccEEEEEEEeccc
Confidence 45777777765422111113467777655 65432 3443334668999999888763 2 45678999997532
Q ss_pred CC----------------CCCeeEEEEEeCccc
Q 019735 251 FS----------------ADDIMGEAEIDIQPL 267 (336)
Q Consensus 251 ~~----------------~dd~iG~~~i~l~~l 267 (336)
.+ .+..||.+.++|-+.
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~lg~~n~~lfd~ 330 (961)
T 1e7u_A 298 PALSGKTSAEMPSPESKGKAQLLYYVNLLLIDH 330 (961)
T ss_dssp --------------------CEEEEEEEESBCT
T ss_pred CccccccccccccccccccceeEEEEeeeeecC
Confidence 21 245899999998765
No 72
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=75.75 E-value=1.4 Score=27.54 Aligned_cols=35 Identities=23% Similarity=0.534 Sum_probs=28.0
Q ss_pred CCCcCCCCC-CCCeEEeeeceEEcccchhhhccCCC
Q 019735 33 RICADCGAP-DPKWASANIGVFICLKCCGVHRSLGT 67 (336)
Q Consensus 33 ~~C~dC~~~-~p~w~s~~~g~f~C~~C~~~hr~lg~ 67 (336)
..|++|+.. -|.|=.-..|-.+|-.|.-..+.-|.
T Consensus 2 ~~C~~C~tt~Tp~WR~gp~G~~LCNaCGl~~k~~~~ 37 (43)
T 2vut_I 2 TTCTNCFTQTTPLWRRNPEGQPLCNACGLFLKLHGV 37 (43)
T ss_dssp CCCSSSCCCCCSCCEECTTSCEECHHHHHHHHHHSS
T ss_pred CcCCccCCCCCCccccCCCCCcccHHHHHHHHHhCC
Confidence 579999985 67899988899999999766555443
No 73
>1u5k_A Hypothetical protein; OBD-fold, Zn-binding, recombination,replication; 2.00A {Deinococcus radiodurans} SCOP: b.40.4.13 g.45.1.2 PDB: 1w3s_A 2v1c_C
Probab=75.53 E-value=1.1 Score=39.13 Aligned_cols=46 Identities=28% Similarity=0.632 Sum_probs=36.5
Q ss_pred CCCCCCcCCCCCCCCeEEeeeceEEcccchhhhccCCCceeeEeEecCCCCCHHHHHHHHHh
Q 019735 30 RDNRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDDWSDDEVDAMIEV 91 (336)
Q Consensus 30 ~~N~~C~dC~~~~p~w~s~~~g~f~C~~C~~~hr~lg~~~s~v~s~~~d~~~~~~~~~~~~~ 91 (336)
|.=..|+.||+++..+.+...|.++|..|..-+ ..+.+++..|..+
T Consensus 148 p~l~~C~~cg~~~~~~fs~~~Gg~~c~~~~~~~----------------~l~~~~l~~l~~l 193 (244)
T 1u5k_A 148 PQTARCARCGAPDPEHPDPLGGQLLCSKCAALP----------------PYPPAVLDFLRHA 193 (244)
T ss_dssp CCCSBCTTTCCBSCCEECTTTSSEECTTTCSSC----------------CCCHHHHHHHHHT
T ss_pred CCcCccccCCCCCCCcEecccCEEECcccCCCC----------------CCCHHHHHHHHHH
Confidence 556799999998667889999999999995321 4678888888665
No 74
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=75.47 E-value=2.9 Score=29.23 Aligned_cols=40 Identities=25% Similarity=0.625 Sum_probs=32.3
Q ss_pred ChHHHHHHH-HhCCCCCCCcCCCCCCCCeEEeeeceEEcccch
Q 019735 18 SGKGRLKDL-LLQRDNRICADCGAPDPKWASANIGVFICLKCC 59 (336)
Q Consensus 18 ~~~~~l~~~-~~~~~N~~C~dC~~~~p~w~s~~~g~f~C~~C~ 59 (336)
+.++.++++ ..++..-.|.-||...-... ..||+.|..|-
T Consensus 12 slRK~vkkie~~q~~ky~C~fCgk~~vkR~--a~GIW~C~~C~ 52 (73)
T 1ffk_W 12 KIRVRVRDVEIKHKKKYKCPVCGFPKLKRA--STSIWVCGHCG 52 (73)
T ss_pred hHHHHHHHHHHhcccCccCCCCCCceeEEE--EeEEEECCCCC
Confidence 568888888 56888899999997655555 46999999994
No 75
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=75.10 E-value=1.8 Score=29.66 Aligned_cols=38 Identities=21% Similarity=0.490 Sum_probs=30.4
Q ss_pred CCCCCCcCCCC-CCCCeEEeeeceEEcccchhhhccCCC
Q 019735 30 RDNRICADCGA-PDPKWASANIGVFICLKCCGVHRSLGT 67 (336)
Q Consensus 30 ~~N~~C~dC~~-~~p~w~s~~~g~f~C~~C~~~hr~lg~ 67 (336)
.+...|++|+. .-|.|-.-.-|-.||-.|.-..+..|.
T Consensus 7 ~~~~~C~~C~t~~Tp~WR~gp~G~~LCNaCGl~~~~~~~ 45 (66)
T 4gat_A 7 NGPTTCTNCFTQTTPLWRRNPEGQPLCNACGLFLKLHGV 45 (66)
T ss_dssp SSSCCCTTTCCCCCSSCEEETTTEEECHHHHHHHHHHCS
T ss_pred CCCCCCCCCCCCCCCcCCcCCCCCCccHHHHHHHHHcCC
Confidence 35689999997 578999998999999999766555443
No 76
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*
Probab=68.68 E-value=1.3 Score=30.11 Aligned_cols=39 Identities=21% Similarity=0.437 Sum_probs=30.5
Q ss_pred CCCCCCCcCCCCC-CCCeEEeeeceEEcccchhhhccCCC
Q 019735 29 QRDNRICADCGAP-DPKWASANIGVFICLKCCGVHRSLGT 67 (336)
Q Consensus 29 ~~~N~~C~dC~~~-~p~w~s~~~g~f~C~~C~~~hr~lg~ 67 (336)
......|++|+.. -|.|=.-..|-.+|-.|.=..+..|.
T Consensus 4 ~~~~~~C~~C~tt~Tp~WR~gp~G~~LCNACGl~~~~~~~ 43 (63)
T 3dfx_A 4 RRAGTSCANCQTTTTTLWRRNANGDPVCNACGLYYKLHNI 43 (63)
T ss_dssp CCTTCCCTTTCCSCCSSCCCCTTSCCCCHHHHHHHHHHSS
T ss_pred CCCCCcCCCcCCCCCCccCCCCCCCchhhHHHHHHHHcCC
Confidence 4567899999985 67999888899999999765554443
No 77
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=66.74 E-value=2.5 Score=32.43 Aligned_cols=36 Identities=33% Similarity=0.842 Sum_probs=28.2
Q ss_pred CCCCcCCCC-CCCCeEEeeeceEEcccchhhhccCCC
Q 019735 32 NRICADCGA-PDPKWASANIGVFICLKCCGVHRSLGT 67 (336)
Q Consensus 32 N~~C~dC~~-~~p~w~s~~~g~f~C~~C~~~hr~lg~ 67 (336)
.+.|++||+ .-|.|=.-.-|-++|-.|.-.++..|.
T Consensus 5 ~~~C~~Cg~~~Tp~WRr~~~g~~lCnaCgl~~Kl~G~ 41 (115)
T 4hc9_A 5 GRECVNCGATSTPLWRRDGTGHYLCNACGLYHKMNGQ 41 (115)
T ss_dssp -CCCTTTCCSCCSSCEECTTSCEECHHHHHHHHHHSS
T ss_pred CCCCCCCCCccCCcceECCCCCCcCcchhhhhhhccc
Confidence 478999998 478999988999999999765544333
No 78
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=62.90 E-value=2.9 Score=30.08 Aligned_cols=41 Identities=17% Similarity=0.508 Sum_probs=30.7
Q ss_pred ChHHHHHHH-HhCCCCCCCcCCCCCCCCeEEeeeceEEcccchh
Q 019735 18 SGKGRLKDL-LLQRDNRICADCGAPDPKWASANIGVFICLKCCG 60 (336)
Q Consensus 18 ~~~~~l~~~-~~~~~N~~C~dC~~~~p~w~s~~~g~f~C~~C~~ 60 (336)
+.++.++++ ..+...-.|..||+.. --....|++.|..|-.
T Consensus 12 ~lRk~vk~ie~~q~~~y~Cp~CG~~~--v~r~atGiW~C~~Cg~ 53 (83)
T 1vq8_Z 12 VSRRRVAEIESEMNEDHACPNCGEDR--VDRQGTGIWQCSYCDY 53 (83)
T ss_dssp HHHHHHHHHHHHHHSCEECSSSCCEE--EEEEETTEEEETTTCC
T ss_pred HHHHHHHHHHHhccccCcCCCCCCcc--eeccCCCeEECCCCCC
Confidence 457788887 5677888999999842 3344589999999943
No 79
>2y3a_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit beta isoform; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus}
Probab=55.47 E-value=12 Score=39.76 Aligned_cols=87 Identities=15% Similarity=0.217 Sum_probs=55.9
Q ss_pred EEEEEEEEEeeeecccCCCCCCCcEEEEEE--CCeE----EEeeeeCCCCCceeeceeeecccC----CCCceEEEEEec
Q 019735 179 IGLLKVKVVKGINLAIRDMMSSDPYVVLRL--GQQT----VQTTIVKSNLNPVWNEELMLSVPQ----EYGPVKLEVFDH 248 (336)
Q Consensus 179 ~g~L~V~v~~a~~L~~~~~~~~dPyv~i~l--~~~~----~rT~~~~~t~nP~W~e~f~f~v~~----~~~~L~v~V~d~ 248 (336)
...+.|+|..+.++...+ ..+-||.+.+ |.+. ..|..+.-..+|.|||.+.|++.- ....|.|+||+.
T Consensus 352 ~~~f~i~i~~~~~~~~~~--~~~~~V~~~l~~g~~~L~~~~~T~~~~~~~~~~Wnewl~f~i~~~dLPr~a~L~~ti~~~ 429 (1092)
T 2y3a_A 352 NNPFQITLVKGNKLNTEE--TVKVHVRAGLFHGTELLCKTVVSSEISGKNDHIWNEQLEFDINICDLPRMARLCFAVYAV 429 (1092)
T ss_dssp CSEEEEEECCCCCCCCCS--SCCCCCBCCEEETTEESSCCCBCCCCCSSSCCCCCEEEEEEEESSSCCTTCEEEEECCCC
T ss_pred CCCEEEEEEEeccCCCCC--CceEEEEEEEEECCEEccCceecccccCCCCCccceeEEeCCccccCChhcEEEEEEEEe
Confidence 467899999998876543 3466666443 6543 345555447789999998887642 446789999985
Q ss_pred CCC----------------------CCCCeeEEEEEeCccc
Q 019735 249 DTF----------------------SADDIMGEAEIDIQPL 267 (336)
Q Consensus 249 ~~~----------------------~~dd~iG~~~i~l~~l 267 (336)
... ..+..+|.+.++|-+.
T Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~lFd~ 470 (1092)
T 2y3a_A 430 LDKVKTKKSTKTINPSKYQTIRKAGKVHYPVAWVNTMVFDF 470 (1092)
T ss_dssp ------------------------------CCEEEEESBCT
T ss_pred cCccccccccccccccccccccccccccceeEEEeeeeECC
Confidence 311 0123889999988664
No 80
>3g9m_A Glucocorticoid receptor; glucocorticoid, DNA-binding, allostery, lever ARM, transcription, hormone; HET: DNA; 1.61A {Rattus norvegicus} SCOP: g.39.1.2 PDB: 3g6p_A* 3g6q_B* 3g6r_B* 3g6u_A* 3g8u_A* 3g8x_A* 3g97_B* 3g99_A* 3g9i_A* 3g9j_A* 3fyl_A* 3g9o_B* 3g9p_B* 3g6t_A* 1r4o_A 1r4r_A 1glu_A* 1gdc_A 2gda_A 1rgd_A ...
Probab=54.55 E-value=5.3 Score=29.07 Aligned_cols=30 Identities=20% Similarity=0.565 Sum_probs=24.3
Q ss_pred CCCCCcCCCCCCCCeEEeeeceEEcccchhhhc
Q 019735 31 DNRICADCGAPDPKWASANIGVFICLKCCGVHR 63 (336)
Q Consensus 31 ~N~~C~dC~~~~p~w~s~~~g~f~C~~C~~~hr 63 (336)
|+..|.=||.+.. ...||++.|..|++.-|
T Consensus 1 g~~~C~VCg~~a~---g~hyGv~sC~~Ck~FFR 30 (90)
T 3g9m_A 1 GSHMCLVCSDEAS---GCHYGVLTCGSCKVFFK 30 (90)
T ss_dssp -CCBCTTTCSBCC---EEETTEEECHHHHHHHH
T ss_pred CCCcCccCCCcCc---ccccCCccchhHhHHhh
Confidence 5788999997643 46899999999999865
No 81
>1hcq_A Protein (estrogen receptor); protein-DNA complex, complexed with drug, transcription/DNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: g.39.1.2 PDB: 1hcp_A 4aa6_A
Probab=52.80 E-value=7.2 Score=28.00 Aligned_cols=32 Identities=25% Similarity=0.618 Sum_probs=26.0
Q ss_pred CCCCCCcCCCCCCCCeEEeeeceEEcccchhhhcc
Q 019735 30 RDNRICADCGAPDPKWASANIGVFICLKCCGVHRS 64 (336)
Q Consensus 30 ~~N~~C~dC~~~~p~w~s~~~g~f~C~~C~~~hr~ 64 (336)
.+...|.=||.+.. ...||++.|..|++..|-
T Consensus 2 ~~~~~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 33 (84)
T 1hcq_A 2 KETRYCAVCNDYAS---GYHYGVWSCEGCKAFFKR 33 (84)
T ss_dssp CCCCBCTTTCSBCC---EEETTEEECHHHHHHHHH
T ss_pred CCCCcCcEECCCCC---CeeeCccchHHhhhhhhh
Confidence 35678999997642 579999999999998874
No 82
>2kgo_A Uncharacterized protein YBII; Zn finger, partially disordered, structural proteomics, META binding, zinc-finger, structural genomics; NMR {Escherichia coli}
Probab=52.51 E-value=0.72 Score=34.99 Aligned_cols=44 Identities=25% Similarity=0.474 Sum_probs=27.3
Q ss_pred HHHHHHHHhCC----CCCCCcCCCCCCCC-eEEeeeceEEcccchhhhc
Q 019735 20 KGRLKDLLLQR----DNRICADCGAPDPK-WASANIGVFICLKCCGVHR 63 (336)
Q Consensus 20 ~~~l~~~~~~~----~N~~C~dC~~~~p~-w~s~~~g~f~C~~C~~~hr 63 (336)
...|...+.+- .-..|.+||.+=|. -.-.-.++..|+.|+..+-
T Consensus 40 ~~~I~~Al~ri~~G~syG~C~~CGe~Ip~~RL~A~P~a~~Cv~Cq~~~E 88 (108)
T 2kgo_A 40 EDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 88 (108)
T ss_dssp HHHHHHHTSCSCSSSCCSBCTTTCCBCCHHHHHHSTTCCSCHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcCceecccCCcccHHHHhcCCCccccHHHHHHHH
Confidence 33555555432 34699999997441 1123446778999998653
No 83
>1r4i_A Androgen receptor; AR, steroid receptor, protein-DNA complex, transcription/DNA complex; 3.10A {Rattus norvegicus} SCOP: g.39.1.2
Probab=50.41 E-value=7 Score=29.35 Aligned_cols=32 Identities=22% Similarity=0.545 Sum_probs=25.7
Q ss_pred CCCCCCcCCCCCCCCeEEeeeceEEcccchhhhcc
Q 019735 30 RDNRICADCGAPDPKWASANIGVFICLKCCGVHRS 64 (336)
Q Consensus 30 ~~N~~C~dC~~~~p~w~s~~~g~f~C~~C~~~hr~ 64 (336)
+.+..|.=||.+. ....||++.|..|++..|-
T Consensus 5 ~~~~~C~VCg~~a---~g~hyGv~sC~aCk~FFRR 36 (105)
T 1r4i_A 5 PPQKTCLICGDEA---SGAHYGALTCGSCKVFFKR 36 (105)
T ss_dssp -CCCBCSSSCSBE---EEEETTEEEEHHHHHHHHH
T ss_pred CCCCCCcEeCCCC---CceEeCCcchhhhhhhhce
Confidence 5678899999743 3679999999999998863
No 84
>2han_B Ecdysone receptor; transcription regulation, transcription factor, DNA-binding, nuclear protein, nuclear receptor, zinc finger; 1.95A {Drosophila melanogaster} SCOP: g.39.1.2 PDB: 1r0o_B 1r0n_B
Probab=50.20 E-value=9.3 Score=29.34 Aligned_cols=31 Identities=23% Similarity=0.618 Sum_probs=25.6
Q ss_pred CCCCCcCCCCCCCCeEEeeeceEEcccchhhhcc
Q 019735 31 DNRICADCGAPDPKWASANIGVFICLKCCGVHRS 64 (336)
Q Consensus 31 ~N~~C~dC~~~~p~w~s~~~g~f~C~~C~~~hr~ 64 (336)
.+..|.=||.... ...||++.|..|++..|-
T Consensus 7 ~~~~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 37 (119)
T 2han_B 7 QEELCLVCGDRAS---GYHYNALTCEGCKGFFRR 37 (119)
T ss_dssp CSCBCTTTCSBCC---EEETTEEECHHHHHHHHH
T ss_pred CCCcCeEeCCcCC---cceECchhHHhhHHhhhh
Confidence 4678999997642 679999999999998773
No 85
>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}
Probab=48.91 E-value=3.5 Score=28.70 Aligned_cols=36 Identities=19% Similarity=0.578 Sum_probs=27.5
Q ss_pred CCCCCcCCCCC-CCCeEE--eeeceEEcccchhhhccCCC
Q 019735 31 DNRICADCGAP-DPKWAS--ANIGVFICLKCCGVHRSLGT 67 (336)
Q Consensus 31 ~N~~C~dC~~~-~p~w~s--~~~g~f~C~~C~~~hr~lg~ 67 (336)
....|++|+.. -|.|=. -.-| .||-.|.=.++..|.
T Consensus 7 ~~~~C~nC~tt~Tp~WRrg~~~~g-~LCNACGl~~~~~~~ 45 (71)
T 2kae_A 7 KSFQCSNCSVTETIRWRNIRSKEG-IQCNACFIYQRKYNK 45 (71)
T ss_dssp -CCCCSSSCCSCCSSCCCCSSSSC-CCSSHHHHHHHHHHS
T ss_pred CCCcCCccCCCCCCccccCCCCCC-ccchHHHHHHHHhCC
Confidence 45799999984 778988 6777 899999766666554
No 86
>2ebl_A COUP transcription factor 1; DNA-binding, metal-binding, nuclear protein, receptor, transcription regulation, zinc, EAR3, erbal3 tfcoup1; NMR {Homo sapiens}
Probab=48.27 E-value=6.1 Score=28.74 Aligned_cols=32 Identities=22% Similarity=0.559 Sum_probs=25.9
Q ss_pred CCCCCCcCCCCCCCCeEEeeeceEEcccchhhhcc
Q 019735 30 RDNRICADCGAPDPKWASANIGVFICLKCCGVHRS 64 (336)
Q Consensus 30 ~~N~~C~dC~~~~p~w~s~~~g~f~C~~C~~~hr~ 64 (336)
+.+..|.=||.+.. ...||++.|..|++..|-
T Consensus 5 ~~~~~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 36 (89)
T 2ebl_A 5 SSGIECVVCGDKSS---GKHYGQFTCEGCKSFFKR 36 (89)
T ss_dssp CSSCBCTTTCSBCC---SEETTEECCHHHHHHHHH
T ss_pred CCCCCCcEeCCCCc---ceEeCchhhHHhhhhhhe
Confidence 45678999997653 468999999999998863
No 87
>2han_A Protein ultraspiracle; transcription regulation, transcription factor, DNA-binding, nuclear protein, nuclear receptor, zinc finger; 1.95A {Drosophila melanogaster} SCOP: g.39.1.2
Probab=47.61 E-value=9.7 Score=27.86 Aligned_cols=31 Identities=26% Similarity=0.749 Sum_probs=24.9
Q ss_pred CCCCCcCCCCCCCCeEEeeeceEEcccchhhhcc
Q 019735 31 DNRICADCGAPDPKWASANIGVFICLKCCGVHRS 64 (336)
Q Consensus 31 ~N~~C~dC~~~~p~w~s~~~g~f~C~~C~~~hr~ 64 (336)
....|.=||.+.. ...||++.|..|++..|-
T Consensus 9 ~~~~C~VCgd~a~---g~hyGv~sC~aCk~FFRR 39 (93)
T 2han_A 9 SKHLCSICGDRAS---GKHYGVYSCEGCKGFFKR 39 (93)
T ss_dssp -CCBCTTTCSBCC---EEETTEEECHHHHHHHHH
T ss_pred CCCCCcEeCCCCc---CeecCcchhHHHHHHHHh
Confidence 3578999997543 579999999999998763
No 88
>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z
Probab=47.54 E-value=4.6 Score=30.79 Aligned_cols=40 Identities=18% Similarity=0.554 Sum_probs=30.4
Q ss_pred ChHHHHHHH-HhCCCCCCCcCCCCCCCCeEEeeeceEEcccch
Q 019735 18 SGKGRLKDL-LLQRDNRICADCGAPDPKWASANIGVFICLKCC 59 (336)
Q Consensus 18 ~~~~~l~~~-~~~~~N~~C~dC~~~~p~w~s~~~g~f~C~~C~ 59 (336)
+.++.++++ ..+...-.|.-||... ---...||+-|..|-
T Consensus 45 slRK~vkkiE~~q~akytCPfCGk~~--vKR~avGIW~C~~Cg 85 (116)
T 3cc2_Z 45 VSRRRVAEIESEMNEDHACPNCGEDR--VDRQGTGIWQCSYCD 85 (116)
T ss_dssp HHHHHHHHHHHHHHSCEECSSSCCEE--EEEEETTEEEETTTC
T ss_pred HHHHHHHHHHHHhccCCcCCCCCCce--eEecCceeEECCCCC
Confidence 457788887 5677888999999743 334457999999994
No 89
>1d4u_A Nucleotide excision repair protein XPA (XPA-MBD); DNA repair, loop-rich domain, relaxation, DNA binding protein; NMR {Homo sapiens} SCOP: a.6.1.2 g.39.1.5 PDB: 1xpa_A
Probab=47.26 E-value=2.7 Score=31.96 Aligned_cols=31 Identities=23% Similarity=0.520 Sum_probs=23.7
Q ss_pred CCCCCcCCCCCCC-CeEEeeeceEEcccchhh
Q 019735 31 DNRICADCGAPDP-KWASANIGVFICLKCCGV 61 (336)
Q Consensus 31 ~N~~C~dC~~~~p-~w~s~~~g~f~C~~C~~~ 61 (336)
+...|.+||...- .|..-+|++-||..|...
T Consensus 4 ~~~~C~eC~~~~~d~~l~~~F~~~VC~~Cr~~ 35 (111)
T 1d4u_A 4 DYVICEECGKEFMDSYLMDHFDLPTCDDCRDA 35 (111)
T ss_dssp CCEECTTTCCEESCSSSTTTTSCCCCTTTCSS
T ss_pred CCCccccCCChhhHHHHHHhCCeeechhhccc
Confidence 4567999998533 344568999999999865
No 90
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=46.66 E-value=9.1 Score=25.32 Aligned_cols=26 Identities=19% Similarity=0.345 Sum_probs=18.7
Q ss_pred CCCcCCCCCCCCeEEeeeceEEcccch
Q 019735 33 RICADCGAPDPKWASANIGVFICLKCC 59 (336)
Q Consensus 33 ~~C~dC~~~~p~w~s~~~g~f~C~~C~ 59 (336)
..|.+|+...- -....-|..+|..|-
T Consensus 12 ~~Cp~C~~~~l-v~D~~~ge~vC~~CG 37 (58)
T 1dl6_A 12 VTCPNHPDAIL-VEDYRAGDMICPECG 37 (58)
T ss_dssp CSBTTBSSSCC-EECSSSCCEECTTTC
T ss_pred ccCcCCCCCce-eEeCCCCeEEeCCCC
Confidence 47999998552 223467899999993
No 91
>2a66_A Orphan nuclear receptor NR5A2; protein-DNA complex, zinc finger, DNA- binding domain, transcription factor, FTZ-F1, C-terminal extension; 2.20A {Homo sapiens} PDB: 2ff0_A
Probab=46.05 E-value=6.3 Score=30.03 Aligned_cols=33 Identities=21% Similarity=0.616 Sum_probs=24.2
Q ss_pred CCCCCCCcCCCCCCCCeEEeeeceEEcccchhhhcc
Q 019735 29 QRDNRICADCGAPDPKWASANIGVFICLKCCGVHRS 64 (336)
Q Consensus 29 ~~~N~~C~dC~~~~p~w~s~~~g~f~C~~C~~~hr~ 64 (336)
.+.+..|.=||.+. ....||++.|..|++..|-
T Consensus 6 ~~~~~~C~VCgd~a---~G~HyGv~sC~aCk~FFRR 38 (113)
T 2a66_A 6 EDLEELCPVCGDKV---SGYHYGLLTCESCKGFFKR 38 (113)
T ss_dssp ----CBCTTTCCBE---EEEETTEEEEHHHHHHHHH
T ss_pred CCCCCCCcEeCCCC---cceeeCcccHHHHHHHHhh
Confidence 34567899999653 3679999999999998763
No 92
>1cit_A NGFI-B, protein (orphan nuclear receptor NGFI-B); early immediate response gene product, transcription factor, monomeric protein-DNA complex; HET: DNA; 2.70A {Rattus norvegicus} SCOP: g.39.1.2
Probab=45.12 E-value=13 Score=27.00 Aligned_cols=28 Identities=32% Similarity=0.686 Sum_probs=22.7
Q ss_pred CCcCCCCCCCCeEEeeeceEEcccchhhhcc
Q 019735 34 ICADCGAPDPKWASANIGVFICLKCCGVHRS 64 (336)
Q Consensus 34 ~C~dC~~~~p~w~s~~~g~f~C~~C~~~hr~ 64 (336)
.|.=||.+.. ...||++.|..|++..|-
T Consensus 2 ~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 29 (89)
T 1cit_A 2 RCAVCGDNAS---CQHYGVRTCEGCKGFFKR 29 (89)
T ss_dssp CCSSSCCCCC---EEETTEEECHHHHHHHHH
T ss_pred CCeEeCCCCc---ceEeCccchhhhhhhcee
Confidence 5888887543 579999999999998763
No 93
>1tjl_A DNAK suppressor protein; DKSA, transcription factor, RNA polymerase, stringent response, PPGPP, riken structural genomics/proteomics initiative; 2.00A {Escherichia coli} SCOP: a.2.14.1 g.39.1.13 PDB: 3h3p_S
Probab=44.99 E-value=3.6 Score=33.14 Aligned_cols=34 Identities=21% Similarity=0.404 Sum_probs=23.2
Q ss_pred CCCCCCcCCCCCCCC-eEEeeeceEEcccchhhhc
Q 019735 30 RDNRICADCGAPDPK-WASANIGVFICLKCCGVHR 63 (336)
Q Consensus 30 ~~N~~C~dC~~~~p~-w~s~~~g~f~C~~C~~~hr 63 (336)
..-..|.+||.+=|. =.-.--++-.|+.|...|-
T Consensus 109 g~yg~C~~Cg~~Ip~~Rl~a~P~a~~Ci~Cq~~~E 143 (151)
T 1tjl_A 109 EDFGYCESCGVEIGIRRLEARPTADLCIDCKTLAE 143 (151)
T ss_dssp TCCSBCSSSSCBCCHHHHHHCTTCCSCHHHHHHHH
T ss_pred CCCceeCCCCCcchHHHHhcCCCcchhHHHHHHHH
Confidence 456799999997441 1123346788999998763
No 94
>2nll_B Protein (thyroid hormone receptor); complex (transcription regulation/DNA), DNA-binding, nuclear protein, zinc- finger, multigene family; HET: DNA 5IU; 1.90A {Homo sapiens} SCOP: g.39.1.2 PDB: 3m9e_A*
Probab=43.03 E-value=10 Score=28.35 Aligned_cols=29 Identities=24% Similarity=0.626 Sum_probs=23.5
Q ss_pred CCCcCCCCCCCCeEEeeeceEEcccchhhhcc
Q 019735 33 RICADCGAPDPKWASANIGVFICLKCCGVHRS 64 (336)
Q Consensus 33 ~~C~dC~~~~p~w~s~~~g~f~C~~C~~~hr~ 64 (336)
..|.=||.+.. ...||++.|..|++..|-
T Consensus 2 ~~C~VCgd~a~---g~hyGv~sC~aCk~FFRR 30 (103)
T 2nll_B 2 ELCVVCGDKAT---GYHYRCITCEGCKGFFRR 30 (103)
T ss_dssp CBCTTTCSBCC---SEETTEECCHHHHHHHHH
T ss_pred CCCeEeCCcCc---CeecCcccHHHhhhhhee
Confidence 57889997543 468999999999998763
No 95
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=41.55 E-value=14 Score=28.12 Aligned_cols=39 Identities=21% Similarity=0.437 Sum_probs=31.3
Q ss_pred CCCCCCCcCCCC-CCCCeEEeeeceEEcccchhhhccCCC
Q 019735 29 QRDNRICADCGA-PDPKWASANIGVFICLKCCGVHRSLGT 67 (336)
Q Consensus 29 ~~~N~~C~dC~~-~~p~w~s~~~g~f~C~~C~~~hr~lg~ 67 (336)
......|++|+. .-|.|=.-+.|-.||-.|.-..+..|.
T Consensus 56 ~~~~~~C~~C~t~~tp~WRr~~~g~~lCNaCgl~~~~~~~ 95 (115)
T 4hc9_A 56 RRAGTSCANCQTTTTTLWRRNANGDPVCNACGLYYKLHNI 95 (115)
T ss_dssp CCTTCCCTTTCCSCCSSCEECTTSCEECHHHHHHHHHHSS
T ss_pred ccccccCCCcCCCCcceeEECCCCCCcchHHHHHHHHhCC
Confidence 345789999997 578999999999999999766555554
No 96
>1a6y_A Orphan nuclear receptor NR1D1; orphan receptor, DNA-binding, reverb, REV- ERB, transcription regulation, transcription/DNA complex; HET: DNA 5IU; 2.30A {Homo sapiens} SCOP: g.39.1.2 PDB: 1ga5_A* 1hlz_A
Probab=40.40 E-value=12 Score=27.49 Aligned_cols=31 Identities=29% Similarity=0.612 Sum_probs=24.2
Q ss_pred CCCCCcCCCCCCCCeEEeeeceEEcccchhhhcc
Q 019735 31 DNRICADCGAPDPKWASANIGVFICLKCCGVHRS 64 (336)
Q Consensus 31 ~N~~C~dC~~~~p~w~s~~~g~f~C~~C~~~hr~ 64 (336)
....|.=||.+.. ...||++.|..|++..|-
T Consensus 6 ~~~~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 36 (94)
T 1a6y_A 6 MVLLCKVCGDVAS---GFHYGVLACEGCKGFFRR 36 (94)
T ss_dssp --CBCTTTSSBCC---EEETTEEECHHHHHHHHH
T ss_pred CCCcCcEeCCCCc---ceEeCccchhhhhhehhe
Confidence 3467999997542 579999999999998773
No 97
>1dsz_A RAR-alpha, retinoic acid receptor alpha; RAR, nuclear receptor, protein-DNA, transcription/DNA complex; HET: DNA; 1.70A {Homo sapiens} SCOP: g.39.1.2 PDB: 1hra_A
Probab=39.78 E-value=13 Score=26.80 Aligned_cols=29 Identities=28% Similarity=0.568 Sum_probs=23.1
Q ss_pred CCCcCCCCCCCCeEEeeeceEEcccchhhhcc
Q 019735 33 RICADCGAPDPKWASANIGVFICLKCCGVHRS 64 (336)
Q Consensus 33 ~~C~dC~~~~p~w~s~~~g~f~C~~C~~~hr~ 64 (336)
..|.=||.+.. ...||++.|..|++..|-
T Consensus 5 ~~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 33 (86)
T 1dsz_A 5 KPCFVCQDKSS---GYHYGVSACEGCKGFFRR 33 (86)
T ss_dssp -CCTTTCSCCC---SEETTEECCHHHHHHHHH
T ss_pred CCCcEECCCcc---ceeeCchhHHHHHHHHHH
Confidence 46999997653 468999999999998873
No 98
>1kb2_A Vitamin D3 receptor; VDR, nuclear receptor, protein-DNA complex, transcription/DNA complex; 2.70A {Homo sapiens} SCOP: g.39.1.2 PDB: 1kb4_A 1kb6_A 1ynw_A
Probab=36.05 E-value=14 Score=27.90 Aligned_cols=30 Identities=30% Similarity=0.698 Sum_probs=24.0
Q ss_pred CCCCcCCCCCCCCeEEeeeceEEcccchhhhcc
Q 019735 32 NRICADCGAPDPKWASANIGVFICLKCCGVHRS 64 (336)
Q Consensus 32 N~~C~dC~~~~p~w~s~~~g~f~C~~C~~~hr~ 64 (336)
...|.=||.... ...||++.|..|++..|-
T Consensus 6 ~~~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 35 (110)
T 1kb2_A 6 PRICGVCGDRAT---GFHFNAMTCEGCKGFFRR 35 (110)
T ss_dssp -CBCTTTCSBCC---SEETTEECCHHHHHHHHH
T ss_pred CCCCcEeCCCCC---ceEeCchhHhhhhhhhee
Confidence 467999997653 468999999999998773
No 99
>2uzg_A Ubiquitin carboxyl-terminal hydrolase 33; UBL conjugation pathway, DE-ubiquitination, alternative splicing, metal-binding, thiol protease; NMR {Homo sapiens} SCOP: g.44.1.5
Probab=34.07 E-value=27 Score=25.53 Aligned_cols=28 Identities=25% Similarity=0.618 Sum_probs=19.5
Q ss_pred CCCCCCcCCCCCCCC-eEEee--eceEEccc
Q 019735 30 RDNRICADCGAPDPK-WASAN--IGVFICLK 57 (336)
Q Consensus 30 ~~N~~C~dC~~~~p~-w~s~~--~g~f~C~~ 57 (336)
+....|.+|++.++. |+++. =|-+-|-+
T Consensus 23 ~~~~~C~~C~~~~~~lw~CL~~~Cg~vgCgr 53 (97)
T 2uzg_A 23 KSLGTCQDCKVQGPNLWACLENRCSYVGCGE 53 (97)
T ss_dssp HTTTCCSSSCCCCSSCEEECCTTCCCEECCT
T ss_pred CCCCcCcCcCCCCCCceeeecccCCCcccCC
Confidence 456789999966655 87766 66666643
No 100
>1lo1_A Steroid hormone receptor ERR2; estrogen related receptor 2, DNA binding domain, HERR2, hormone nuclear receptor; NMR {Homo sapiens} SCOP: g.39.1.2
Probab=33.47 E-value=8.6 Score=28.47 Aligned_cols=30 Identities=27% Similarity=0.618 Sum_probs=24.2
Q ss_pred CCCCcCCCCCCCCeEEeeeceEEcccchhhhcc
Q 019735 32 NRICADCGAPDPKWASANIGVFICLKCCGVHRS 64 (336)
Q Consensus 32 N~~C~dC~~~~p~w~s~~~g~f~C~~C~~~hr~ 64 (336)
...|.=||.+.. ...||++.|..|++..|-
T Consensus 4 ~~~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 33 (98)
T 1lo1_A 4 KRLCLVCGDIAS---GYHYGVASCEACKAFFKR 33 (98)
T ss_dssp CCEETTTTEECS---EESSSSEECHHHHHHHHH
T ss_pred CCCCcEeCCCCc---CeeeCccchhhhhhhhee
Confidence 467889997542 579999999999998773
No 101
>1ynw_B Retinoic acid receptor RXR-alpha, retinoid X receptor; VDR, nuclear receptor, protein-DNA complex, transcripti complex; 3.00A {Homo sapiens} SCOP: g.39.1.2
Probab=33.42 E-value=10 Score=28.07 Aligned_cols=30 Identities=33% Similarity=0.805 Sum_probs=23.1
Q ss_pred CCCCcCCCCCCCCeEEeeeceEEcccchhhhcc
Q 019735 32 NRICADCGAPDPKWASANIGVFICLKCCGVHRS 64 (336)
Q Consensus 32 N~~C~dC~~~~p~w~s~~~g~f~C~~C~~~hr~ 64 (336)
...|.=||.+.. ...||++.|..|++..|-
T Consensus 3 ~~~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 32 (99)
T 1ynw_B 3 KHICAICGDRSS---GKHYGVYSCEGCKGFFKR 32 (99)
T ss_dssp --CBTTTBSCCC---BCCTTSCBCSHHHHHHHH
T ss_pred CCCCceeCCCCc---ceeeCccchHHHHHHHHh
Confidence 357999997543 468999999999998763
No 102
>1dsz_B RXR-alpha, retinoic acid receptor RXR-alpha; RAR, nuclear receptor, protein-DNA, transcription/DNA complex; HET: DNA; 1.70A {Homo sapiens} SCOP: g.39.1.2 PDB: 1by4_A* 1rxr_A 1r0n_A 1r0o_A 2nll_A*
Probab=32.79 E-value=11 Score=27.14 Aligned_cols=31 Identities=32% Similarity=0.779 Sum_probs=24.6
Q ss_pred CCCCCcCCCCCCCCeEEeeeceEEcccchhhhcc
Q 019735 31 DNRICADCGAPDPKWASANIGVFICLKCCGVHRS 64 (336)
Q Consensus 31 ~N~~C~dC~~~~p~w~s~~~g~f~C~~C~~~hr~ 64 (336)
.+..|.=||.+.. ...||++.|..|++..|-
T Consensus 4 ~~~~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 34 (85)
T 1dsz_B 4 TKHICAICGDRSS---GKHYGVYSCEGCKGFFKR 34 (85)
T ss_dssp CCEECTTTCCEES---SEETTEECCHHHHHHHHH
T ss_pred CCCCCCEeCCCCC---ceeeCccchHHHHHHHHH
Confidence 4567999997543 458999999999998764
No 103
>4hn5_A Glucocorticoid receptor; glucocorticoid receptor, steroid receptors, NGRE, repre transcription; HET: DNA; 1.90A {Homo sapiens} PDB: 4hn6_A*
Probab=30.74 E-value=21 Score=27.30 Aligned_cols=32 Identities=19% Similarity=0.529 Sum_probs=23.7
Q ss_pred CCCCCCCcCCCCCCCCeEEeeeceEEcccchhhhc
Q 019735 29 QRDNRICADCGAPDPKWASANIGVFICLKCCGVHR 63 (336)
Q Consensus 29 ~~~N~~C~dC~~~~p~w~s~~~g~f~C~~C~~~hr 63 (336)
.+....|.=||.+.. ...||++.|..|++.-|
T Consensus 26 ~~~~~~C~VCgd~a~---G~HyGv~sC~aCk~FFR 57 (117)
T 4hn5_A 26 NAPPKLCLVCSDEAS---GCHYGVLTCGSCKVFFK 57 (117)
T ss_dssp ----CBCTTTCSBCC---EEETTEEECHHHHHHHH
T ss_pred CCCCCcCCcCCCcCc---ccccCCcccchhhhhhh
Confidence 345678999997653 46899999999999765
No 104
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae}
Probab=30.02 E-value=31 Score=28.35 Aligned_cols=27 Identities=26% Similarity=0.568 Sum_probs=20.9
Q ss_pred CCcCCCCCCCCeEE-eeeceEEcccchh
Q 019735 34 ICADCGAPDPKWAS-ANIGVFICLKCCG 60 (336)
Q Consensus 34 ~C~dC~~~~p~w~s-~~~g~f~C~~C~~ 60 (336)
.|-+|+...+.-+. ..-|-.||..|--
T Consensus 23 ~CPECGs~~t~IV~D~erGE~VCsdCGL 50 (197)
T 3k1f_M 23 TCPECKVYPPKIVERFSEGDVVCALCGL 50 (197)
T ss_dssp CCTTTCCSSCCEEEEGGGTEEEETTTCB
T ss_pred ECcCCCCcCCeEEEeCCCCEEEEcCCCC
Confidence 79999985555443 5789999999943
No 105
>3izc_m 60S ribosomal protein RPL43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_m 3o58_g 3o5h_g 3u5e_p 3u5i_p 4b6a_p 1s1i_9
Probab=29.99 E-value=38 Score=24.64 Aligned_cols=39 Identities=28% Similarity=0.543 Sum_probs=29.1
Q ss_pred ChHHHHHHHHh-CCCCCCCcCCCCCCCCeEEeeeceEEcccc
Q 019735 18 SGKGRLKDLLL-QRDNRICADCGAPDPKWASANIGVFICLKC 58 (336)
Q Consensus 18 ~~~~~l~~~~~-~~~N~~C~dC~~~~p~w~s~~~g~f~C~~C 58 (336)
+.++.++++-. +...-.|.-||...-.- ...||+-|-.|
T Consensus 21 slRK~vkkie~~q~~ky~CpfCgk~~vkR--~a~GIW~C~~C 60 (92)
T 3izc_m 21 SLRRQVKKLEIQQHARYDCSFCGKKTVKR--GAAGIWTCSCC 60 (92)
T ss_dssp HHHHHHHHHHHHHHSCCCCSSSCSSCCEE--EETTEEECTTT
T ss_pred hHHHHHHHHHHHHhcCCcCCCCCCceeee--cccceEEcCCC
Confidence 45667776654 55677999999876544 45799999999
No 106
>3j21_i 50S ribosomal protein L37AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=29.58 E-value=27 Score=24.92 Aligned_cols=40 Identities=25% Similarity=0.543 Sum_probs=29.5
Q ss_pred ChHHHHHHHHh-CCCCCCCcCCCCCCCCeEEeeeceEEcccch
Q 019735 18 SGKGRLKDLLL-QRDNRICADCGAPDPKWASANIGVFICLKCC 59 (336)
Q Consensus 18 ~~~~~l~~~~~-~~~N~~C~dC~~~~p~w~s~~~g~f~C~~C~ 59 (336)
+.++.++++-. +...-.|.-||...-.- ...||+-|-.|-
T Consensus 20 slRK~vkkie~~q~~ky~CpfCGk~~vkR--~a~GIW~C~kCg 60 (83)
T 3j21_i 20 KIRRRVAAVEAKMRQKHTCPVCGRKAVKR--ISTGIWQCQKCG 60 (83)
T ss_dssp HHHHHHHHHHHHHHSCBCCSSSCSSCEEE--EETTEEEETTTC
T ss_pred hHHHHHHHHHHHhhcccCCCCCCCceeEe--cCcCeEEcCCCC
Confidence 45677777654 45677999999875433 468999999993
No 107
>3cbb_A HNF-4-alpha, hepatocyte nuclear factor 4-alpha, DNA binding domain, nuclear; zinc finger; 2.00A {Homo sapiens}
Probab=29.35 E-value=15 Score=25.90 Aligned_cols=28 Identities=32% Similarity=0.695 Sum_probs=22.2
Q ss_pred CCcCCCCCCCCeEEeeeceEEcccchhhhcc
Q 019735 34 ICADCGAPDPKWASANIGVFICLKCCGVHRS 64 (336)
Q Consensus 34 ~C~dC~~~~p~w~s~~~g~f~C~~C~~~hr~ 64 (336)
.|.=||.+.. ...||++.|..|++..|-
T Consensus 2 ~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 29 (78)
T 3cbb_A 2 LCAICGDRAT---GKHYGASSCDGCKGFFRR 29 (78)
T ss_dssp BCTTTSSBCC---SEETTEECCHHHHHHHHH
T ss_pred CCeEeCCCCC---ceEeCCcchhhhceeeeE
Confidence 4778886543 468999999999998763
No 108
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=29.07 E-value=30 Score=21.71 Aligned_cols=26 Identities=23% Similarity=0.726 Sum_probs=17.8
Q ss_pred CCCcCCCCCCCCeEEeeeceEEcccch
Q 019735 33 RICADCGAPDPKWASANIGVFICLKCC 59 (336)
Q Consensus 33 ~~C~dC~~~~p~w~s~~~g~f~C~~C~ 59 (336)
..|.+|++..-. ..-.-|-++|..|-
T Consensus 6 ~~CP~C~~~~l~-~d~~~gelvC~~CG 31 (50)
T 1pft_A 6 KVCPACESAELI-YDPERGEIVCAKCG 31 (50)
T ss_dssp CSCTTTSCCCEE-EETTTTEEEESSSC
T ss_pred EeCcCCCCcceE-EcCCCCeEECcccC
Confidence 479999884211 12346889999993
No 109
>3dzy_D Peroxisome proliferator-activated receptor gamma; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_D* 3e00_D* 2env_A
Probab=28.56 E-value=19 Score=33.83 Aligned_cols=31 Identities=29% Similarity=0.522 Sum_probs=24.6
Q ss_pred CCCCCCcCCCCCCCCeEEeeeceEEcccchhhhc
Q 019735 30 RDNRICADCGAPDPKWASANIGVFICLKCCGVHR 63 (336)
Q Consensus 30 ~~N~~C~dC~~~~p~w~s~~~g~f~C~~C~~~hr 63 (336)
..+..|.=||.+... ..||+..|..|++..|
T Consensus 48 ~~~~~C~vC~~~~~g---~hygv~~C~~C~~FFr 78 (419)
T 3dzy_D 48 LMAIECRVCGDKASG---FHYGVHACEGCKGFFR 78 (419)
T ss_dssp --CCCCSSSCSCCCS---BCSSSBCCHHHHHHHH
T ss_pred CCCCcCeECCCcCCC---CccCcccchhhhHHHc
Confidence 457789999986643 5899999999999865
No 110
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=26.50 E-value=24 Score=22.95 Aligned_cols=29 Identities=24% Similarity=0.641 Sum_probs=21.8
Q ss_pred CCCCcCCCCCCCCeEEeee--------ceEEcccchh
Q 019735 32 NRICADCGAPDPKWASANI--------GVFICLKCCG 60 (336)
Q Consensus 32 N~~C~dC~~~~p~w~s~~~--------g~f~C~~C~~ 60 (336)
+..|..||.....|..+-+ -.++|..|..
T Consensus 15 ~~~Cp~Cg~~~~~~~q~Q~rsadep~T~fy~C~~Cg~ 51 (57)
T 1qyp_A 15 KITCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKCGH 51 (57)
T ss_dssp ECCCTTTCCSEEEEEEECCSSSSCSSEEEEEESSSCC
T ss_pred EeECCCCCCCEEEEEEeecccCCCCCcEEEEcCCCCC
Confidence 5689999998777776554 2579999954
No 111
>3iz5_m 60S ribosomal protein L43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_m 1ysh_D 2zkr_z
Probab=26.31 E-value=38 Score=24.61 Aligned_cols=40 Identities=25% Similarity=0.534 Sum_probs=28.9
Q ss_pred ChHHHHHHHHh-CCCCCCCcCCCCCCCCeEEeeeceEEcccch
Q 019735 18 SGKGRLKDLLL-QRDNRICADCGAPDPKWASANIGVFICLKCC 59 (336)
Q Consensus 18 ~~~~~l~~~~~-~~~N~~C~dC~~~~p~w~s~~~g~f~C~~C~ 59 (336)
+.++.++++-. +...-.|.-||...-.- ...||+-|-.|-
T Consensus 21 slRK~vkkie~~q~~ky~CpfCgk~~vkR--~a~GIW~C~~Cg 61 (92)
T 3iz5_m 21 SLRKQIKKMEVSQHSKYFCEFCGKFAVKR--KAVGIWGCKDCG 61 (92)
T ss_dssp HHHHHHHHHHHHHHSCBCCTTTCSSCBEE--EETTEEECSSSC
T ss_pred HHHHHHHHHHHHHhccccCcccCCCeeEe--cCcceEEcCCCC
Confidence 35666666554 45667999999876444 458999999993
No 112
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=25.84 E-value=14 Score=23.85 Aligned_cols=23 Identities=35% Similarity=0.775 Sum_probs=18.8
Q ss_pred CCCCCcCCCCCCCCeEEeeeceEEcccch
Q 019735 31 DNRICADCGAPDPKWASANIGVFICLKCC 59 (336)
Q Consensus 31 ~N~~C~dC~~~~p~w~s~~~g~f~C~~C~ 59 (336)
...+|..|++. ...|+.-|-+|-
T Consensus 13 ~k~iCpkC~a~------~~~gaw~CrKCG 35 (51)
T 3j21_g 13 KKYVCLRCGAT------NPWGAKKCRKCG 35 (51)
T ss_dssp SEEECTTTCCE------ECTTCSSCSSSS
T ss_pred CCccCCCCCCc------CCCCceecCCCC
Confidence 55799999998 457889999993
No 113
>2ida_A Hypothetical protein; zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Rhodopseudomonas palustris} SCOP: g.44.1.5
Probab=22.06 E-value=15 Score=27.38 Aligned_cols=28 Identities=25% Similarity=0.563 Sum_probs=20.1
Q ss_pred CCCCCCcCCCCCCCCeEEeeeceEEcccchhh
Q 019735 30 RDNRICADCGAPDPKWASANIGVFICLKCCGV 61 (336)
Q Consensus 30 ~~N~~C~dC~~~~p~w~s~~~g~f~C~~C~~~ 61 (336)
|....|.+|++.+..|+ -.++|+.|-.|
T Consensus 16 p~~~~C~~C~~~~~~Wv----~LwlCL~CG~V 43 (102)
T 2ida_A 16 PSALGCEECLKIGSPWV----HLRICRTCGHV 43 (102)
T ss_dssp CSSSSCHHHHTTTCCCS----CBEEESSSCCC
T ss_pred CCCCcCccccccCCcch----heeeeeEcCCC
Confidence 45678999999886665 25677777443
No 114
>1ovx_A ATP-dependent CLP protease ATP-binding subunit CL; treble CLEF zinc finger, homodimer, metal binding protein; NMR {Escherichia coli} SCOP: g.39.1.11
Probab=20.80 E-value=58 Score=22.15 Aligned_cols=28 Identities=29% Similarity=0.699 Sum_probs=19.6
Q ss_pred CCCcCCCCCCC---CeEEeeeceEEcccchhh
Q 019735 33 RICADCGAPDP---KWASANIGVFICLKCCGV 61 (336)
Q Consensus 33 ~~C~dC~~~~p---~w~s~~~g~f~C~~C~~~ 61 (336)
..|-=||.... .-+. .-|+|||..|..+
T Consensus 19 ~~CSFCGK~e~eV~~LIa-GpgvyICdeCI~~ 49 (67)
T 1ovx_A 19 LYCSFCGKSQHEVRKLIA-GPSVYICDECVDL 49 (67)
T ss_dssp CCCTTTCCCTTTSSSEEE-CSSCEEEHHHHHH
T ss_pred cEecCCCCCHHHHcccCC-CCCCChhHHHHHH
Confidence 47999997643 2232 2489999999754
No 115
>3d00_A Tungsten formylmethanofuran dehydrogenase subunit; FWDE/GAPDH domain-like fold, structural genomics, joint CENT structural genomics; HET: MSE; 1.90A {Syntrophus aciditrophicus}
Probab=20.71 E-value=12 Score=31.35 Aligned_cols=22 Identities=32% Similarity=0.833 Sum_probs=17.3
Q ss_pred CCcCCCCCCCCeEEeeeceEEcccchh
Q 019735 34 ICADCGAPDPKWASANIGVFICLKCCG 60 (336)
Q Consensus 34 ~C~dC~~~~p~w~s~~~g~f~C~~C~~ 60 (336)
.|..||..-+.- |-.+|..|++
T Consensus 165 ~C~~CGE~~~~~-----g~~~C~~C~~ 186 (191)
T 3d00_A 165 LCPQCREAYPAQ-----DGELCLSCQG 186 (191)
T ss_dssp ECTTTCCEEEGG-----GCSSCHHHHT
T ss_pred ECCcCCCChhhC-----CCcCCccccC
Confidence 599999865543 8899999975
No 116
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=20.42 E-value=54 Score=29.85 Aligned_cols=26 Identities=27% Similarity=0.641 Sum_probs=20.1
Q ss_pred CCcCCCCCCCCeE-EeeeceEEcccch
Q 019735 34 ICADCGAPDPKWA-SANIGVFICLKCC 59 (336)
Q Consensus 34 ~C~dC~~~~p~w~-s~~~g~f~C~~C~ 59 (336)
.|-+||...|.-+ -..-|-.+|..|-
T Consensus 23 ~Cp~C~~~~~~lv~D~~~G~~vC~~CG 49 (345)
T 4bbr_M 23 TCPECKVYPPKIVERFSEGDVVCALCG 49 (345)
T ss_dssp CCSSCCCSSCCEEEEGGGTEEEETTTC
T ss_pred cCCCCCCCCCceeEECCCCcEEeCCCC
Confidence 7999998555432 3568999999994
No 117
>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A*
Probab=20.20 E-value=22 Score=33.94 Aligned_cols=30 Identities=33% Similarity=0.791 Sum_probs=23.9
Q ss_pred CCCCCcCCCCCCCCeEEeeeceEEcccchhhhc
Q 019735 31 DNRICADCGAPDPKWASANIGVFICLKCCGVHR 63 (336)
Q Consensus 31 ~N~~C~dC~~~~p~w~s~~~g~f~C~~C~~~hr 63 (336)
.+..|.=||.+... ..||+..|-.|++..|
T Consensus 136 ~~~~C~VCg~~a~g---~hygv~sC~~Ck~FFr 165 (467)
T 3dzy_A 136 TKHICAICGDRSSG---KHYGVYSCEGCKGFFK 165 (467)
T ss_dssp -CEECTTTSSEECS---EETTEECCHHHHHHHH
T ss_pred CCCcceeCCCCCCC---CcCCCcchhhhhHhcc
Confidence 35579999986443 5899999999999876
Done!